Citrus Sinensis ID: 009395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
Protein Sequence
MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGRNHVLG
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccEEccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccEEEEEEccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHccccccEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccEEEEcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHccccEEEEcccccHHHHHHHHHHHccccccccEEEEccccccHHHHHcccccHHHEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHcccHHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEccHHHccEEEEEccccccccccHHHHHcHHcHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mmltskpvkgeeahslgLVDAVVAPNQLVSTARQWALDILEHrrpwvatlyktdkieplgEAREIFKFARAQArkqapnlthpiVCIDVVeagvvsgpraglQKEAEDFQKLLRSETCKSLVHIFFAqrgtskvpgvtdlglaprRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGvldyesfkDVDMVIEAIIENVSLKQQIFADLekycpphcilasntstidlnligertyskdrivgahffspahvMPLLEIvrtnqtspQVIVDLLDIGkkikktpivvgnctgfavnrmffpYTQAAFLLVERGTDLYLIDRAItkfgmpmgpfrlADLVGFGVAIATGMQfienfpertyksMIIPIMqedkragettrkgfylyderrkaspdpeVKKFIEKARsmsgvaidpkfaklseKDIVEMIFFPVVNEACRVFAEGIAVKAADLDiasvmgmgfppyrFVTFIhrgfskssscFKNLLCYfdqgrnhvlg
Flexible Loop (DISEMBL)
mmltskpvkgeeahslglvDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQArkqapnltHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFfaqrgtskvpgvtdlglaprRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGrvranlqsrvkkgkmtqekfEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIgkkikktpiVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPimqedkragettrkgfylyderrkaspdpevKKFIEkarsmsgvaidpkfaKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDqgrnhvlg
Low Complexity Region (SEG)
MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGRNHVLG
Disordered region (IsUnstruct)
***************LGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRV******QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQ*********RKGFYLY************************VAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQG******
Disordered Region (DISOPRED)
MMLTS**VKGEEAHSLGLVDAVVAPNQLVSTARQWALDILE********************AREIFKFA********PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT*************RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRAN********************LLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSM***********LSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGRNHV**
Disordered Region (DISEMBL)
*************HSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQS*********EKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGRNHVLG
Disordered Region (DISPRO)
****SKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR***L*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGRNHVLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	535	2.2.26 [Sep-21-2011]
Q9ZPI5	725	Peroxisomal fatty acid be	yes	no	0.940	0.693	0.801	0.0
Q39659	725	Glyoxysomal fatty acid be	N/A	no	0.940	0.693	0.795	0.0
O49809	725	Glyoxysomal fatty acid be	N/A	no	0.940	0.693	0.785	0.0
Q9ZPI6	721	Peroxisomal fatty acid be	no	no	0.940	0.697	0.568	1e-174
Q8W1L6	726	Peroxisomal fatty acid be	no	no	0.977	0.720	0.540	1e-171
Q6NYL3	718	Peroxisomal bifunctional	yes	no	0.908	0.676	0.332	2e-68
Q87ZB2	721	Fatty acid oxidation comp	yes	no	0.893	0.662	0.318	2e-67
A3CYJ4	716	Fatty acid oxidation comp	yes	no	0.923	0.689	0.330	2e-67
Q48GW3	721	Fatty acid oxidation comp	yes	no	0.895	0.664	0.319	2e-67
A9KU91	716	Fatty acid oxidation comp	yes	no	0.923	0.689	0.328	3e-67

>sp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsis thaliana GN=MFP2 PE=1 SV=1

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/503 (80%), Positives = 456/503 (90%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+  R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI  FA+AQ  K+APN+ HP++C+D +E G+VSGPRAGL+KEAE   ++++ +T K 
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
           N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA  LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRL DLVGFGVAIAT  QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           YLYD++RKA PDPE+KK+IEKARS+SGV +DPK A LSEKDI+EM FFPVVNEACRVFAE
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAE 645

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDIA +MGMGFPPYR
Sbjct: 646 GIAVKAADLDIAGIMGMGFPPYR 668

Involved in peroxisomal fatty acid beta-oxidation during seed germination. Possesses enoyl-CoA hydratase activity against long chain substrates (C14-C18) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C18).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5

>sp|Q39659|MFPA_CUCSA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/503 (79%), Positives = 451/503 (89%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MMLTSKP+KG+EAHSLGLVDA+V P +L++TAR+WAL+ILE RRPWV +L++TDK+E L 
Sbjct: 166 MMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLA 225

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAR+IF  ARAQA+KQ PNL H I CID VE GVVSGPRAGL KEAE+FQ LL S+TCKS
Sbjct: 226 EARKIFNLARAQAKKQYPNLKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKS 285

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+HIFFAQR T+KVPGVTDLGL PR++KKVAI+GGGLMGSGIATALILSNY V+LKEVN+
Sbjct: 286 LIHIFFAQRSTTKVPGVTDLGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVND 345

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGI RVRANLQSRVKKG MT EKFEK+ISLL GVL+YESFKDVDMVIEA+IENVSL
Sbjct: 346 KFLQAGIDRVRANLQSRVKKGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSL 405

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIF+DLEKYCPPHC+LA+NTSTIDL LIGER  S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFSDLEKYCPPHCMLATNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRT 465

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             T+ QVIVDLLD+GK IKKTP+VVGNCTGFAVNRMFFPY+QAA LL E G D Y IDRA
Sbjct: 466 KHTAAQVIVDLLDVGKNIKKTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRA 525

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRL DLVGFGVA AT  QF++ FPERTYKSM+IP+MQEDK AGE+TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGF 585

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           Y+YD+ RKA P+PE+KK+IEKAR+ SGV++DPK  KL EKDIVEMIFFPVVNEACRV AE
Sbjct: 586 YVYDKNRKAGPNPELKKYIEKARNSSGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAE 645

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDIA VMGMGFP YR
Sbjct: 646 GIAVKAADLDIAGVMGMGFPSYR 668

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2

 Score =  846 bits (2186), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/503 (78%), Positives = 451/503 (89%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVK EE HSLGL+DAVV P +L++ AR+WALDI E R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLG 225

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFA+ Q R+QAPN+ HP++C++ VE G+VSG RAGL+KEA+   +++  +T K 
Sbjct: 226 EAREILKFAKDQTRRQAPNMKHPLMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKG 285

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGT+KVPGVTD GL PR++ KVAI+GGGLMGSGIATALILSNY VILKEVNE
Sbjct: 286 LIHVFFSQRGTTKVPGVTDRGLVPRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNE 345

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGIGRV+ANLQSRVKKGKM++EKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVKKGKMSKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRT 465

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
           N TS QVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA  LVE GTD YLID+A
Sbjct: 466 NHTSAQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKA 525

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ++KFGMPMGPFRL DLVGFGVAIAT  QFIENFPERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 VSKFGMPMGPFRLCDLVGFGVAIATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGF 585

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           YLYD+RRKA PDPE+K +I+KARS+SG   DPK  KLSEK+I+EM FFPVVNEACRVFAE
Sbjct: 586 YLYDDRRKAKPDPEIKNYIDKARSVSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAE 645

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDIA + GMGFPPYR
Sbjct: 646 GIAVKAADLDIAGIFGMGFPPYR 668

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q9ZPI6|AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1

 Score =  612 bits (1578), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 286/503 (56%), Positives = 379/503 (75%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+L SK +  EE H LGL+DA+V P  ++ST+R+WALDI E R+P++ +L++TDKI  L 
Sbjct: 163 MILLSKSISSEEGHKLGLIDALVPPGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLS 222

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAR I K +R  A+K APN+     CI+V+E G++ G  +G+ KEAE F++L+ S+T K 
Sbjct: 223 EARAILKNSRQLAKKIAPNMPQHHACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKG 282

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVH+FFAQR TSKVP VTD+GL PR +KKVA++GGGLMGSGIATAL+LSN  V+LKE+N 
Sbjct: 283 LVHVFFAQRATSKVPNVTDVGLKPRPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINS 342

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           +FL  GI  V AN++S V +GK+TQ+K  K +SL  GVLDY  F DVDMVIEA+IEN+ L
Sbjct: 343 EFLMKGIKSVEANMKSLVSRGKLTQDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQL 402

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQ IF ++EK C PHCILASNTSTIDL++IGE+T SKDRIVGAHFFSPAH+MPLLEIVR+
Sbjct: 403 KQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRS 462

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             TS QVI+DL+ +GK IKK P+VVGNC GFAVNR FFPY+QAA +L   G DL+ ID  
Sbjct: 463 KNTSAQVILDLMAVGKAIKKVPVVVGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSV 522

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           IT FG+P+GPF+L DL G G+ +A G  + + + +R ++S +  ++ +  R G+   +G+
Sbjct: 523 ITSFGLPLGPFQLGDLAGHGIGLAVGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGY 582

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           Y+Y++  K  PDP V   +EK+R ++ +    K   +++K+IVEMI FPVVNEACRV  E
Sbjct: 583 YIYEKGSKPKPDPSVLSIVEKSRKLTNIMPGGKPISVTDKEIVEMILFPVVNEACRVLDE 642

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           G+ ++A+DLDIASV+GM FP YR
Sbjct: 643 GVVIRASDLDIASVLGMSFPSYR 665

Involved in peroxisomal fatty acid beta-oxidation. Required for wound-induced jasmonate biosynthesis. Possesses enoyl-CoA hydratase activity against short chain substrates (C4-C6) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C16).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q8W1L6|MFP_ORYSJ Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2

 Score =  603 bits (1554), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 288/533 (54%), Positives = 385/533 (72%), Gaps = 10/533 (1%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MML SK +  +E    GLVDA+ +P++L+  +R WAL+I  +R+PW+ +L +TD++  L 
Sbjct: 163 MMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLS 222

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAR +   AR QA+K A NL     C+DV+E GV+ G  AG+ KEA+ F++L+ S T K+
Sbjct: 223 EARSVLNSARQQAKKVAANLPQHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKA 282

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVH FFAQR T+KVPGVTD+ L PR+++KVA++GGGLMGSGIATAL++SN  V+LKEVN 
Sbjct: 283 LVHAFFAQRLTTKVPGVTDVQLKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNP 342

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           +FL+ G   + ANL+  VK+G +T++K  K +SLL G LDY  FKDVDMVIEA+IE + L
Sbjct: 343 QFLQRGQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPL 402

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQ IF+DLEK CPPHCILA+NTSTIDLN++GE+T S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct: 403 KQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRT 462

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            +TSPQ I+DL+ +GK IKK P+VVGNCTGFAVNR FFPYTQ + LLV  G D++ IDR 
Sbjct: 463 EKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRV 522

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+ FGMPMGPF+L DL G+GVA+A    +   F  R   S ++ +M ++ R G++  KG+
Sbjct: 523 ISSFGMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGY 582

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           YLY++  K  PDP V+  I++ R  +      K   LS++DI+EMIFFPVVNEACRV  E
Sbjct: 583 YLYEKGGKPKPDPSVQVVIDEYRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDE 642

Query: 481 GIAVKAADLDIASVMGMGFPPYR----------FVTFIHRGFSKSSSCFKNLL 523
            + ++A+DLDIAS++GMGFP +R             +IH   SK +  + +  
Sbjct: 643 NVVIRASDLDIASILGMGFPKFRGGLVFWADTIGAPYIHSKLSKWTEIYGDFF 695

Multifunctional enzyme involved in fatty acid beta-oxidation. Also binds to RNA and microtubules. Possible role in subcellular mRNA localization and RNA-cytoskeleton interactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q6NYL3|ECHP_DANRE Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1

 Score =  260 bits (665), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 174/523 (33%), Positives = 272/523 (52%), Gaps = 37/523 (7%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI----LEHRRPWVATLYKTDKI 56
           ++ T + V  +EA  LG+VD V   N     A ++AL      L  RR  + T      +
Sbjct: 150 LITTGRHVSAQEALKLGMVDQVTEQNT-CEVALEFALKAVGKPLSSRRLSMLTTPCPPGL 208

Query: 57  EPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
           +       IF+ A  Q +K+A  +  P+ C+  V A  +     G+++E E    L  S 
Sbjct: 209 D------GIFEAATMQVQKKARGVMAPLACVQAVRAATLPYSE-GIKREGELMATLFSSG 261

Query: 117 TCKSLVHIFFAQRGTSK--VP-GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPV 173
             ++L + FFAQR   K  +P G       PR ++  A++G G MG GI  +L      V
Sbjct: 262 QAQALQYSFFAQRTAEKWTLPSGAQWNNSKPREIQSAAVIGLGTMGRGIVVSLARVGISV 321

Query: 174 ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEA 233
           I  E  +K LE G   V   L+   K+  ++      +++LL   L  +  KDVD+VIEA
Sbjct: 322 IAVESEKKLLETGRQMVIGMLERDAKRRGVS-----ASLNLLKFSLSLQDLKDVDLVIEA 376

Query: 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP 293
           + E+++LK+QIF +L + C P  +L SNTS +D++ + + T     + G HFFSPAHVM 
Sbjct: 377 VFEDMALKKQIFRELSRVCRPATLLCSNTSGLDVDALADVTDRPQLVAGMHFFSPAHVMK 436

Query: 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTD 353
           LLE+V   ++S + I   + +GK++ K  + VGNC GF  NRM  PY + A  L+E G  
Sbjct: 437 LLEVVCGPRSSKEAIATAMSLGKRMGKVSVAVGNCPGFVGNRMLMPYLEQATFLLEEGAT 496

Query: 354 LYLIDRAITKFGMPMGPFRLADL----VGFGVAIATGMQFIE----NFPERTYKSMIIPI 405
              ID+A+  FG  MG FR++DL    VG+ V   +G+   +    + P R       PI
Sbjct: 497 PQQIDKALEDFGFAMGVFRMSDLAGLDVGWRVRKESGLTGPDVDPKDPPRRRQGRKYCPI 556

Query: 406 ---MQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEK 460
              + +  R G+ T +G+Y+YD+     A PDP ++  +E  RS  G  I P+  K++++
Sbjct: 557 PDMVCQQGRFGQKTGRGWYMYDKPGDTNAKPDPLIQNLLETYRSRYG--IQPR--KITDQ 612

Query: 461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
           +I+E   F + NE  R+  + IA +  D+D+  + G GFP +R
Sbjct: 613 EIIERCLFALANEGFRILKDKIAGQPEDIDVIYLFGYGFPRHR 655

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q87ZB2|FADB_PSESM Fatty acid oxidation complex subunit alpha OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=fadB PE=3 SV=1

 Score =  257 bits (657), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 166/521 (31%), Positives = 268/521 (51%), Gaps = 43/521 (8%)

Query: 4   TSKPVKGEEAHSLGLVDAVVAPNQL-------VSTARQWALDILEHRRPWVATLYKTDKI 56
           + K    E+A  +G+VDA+VAP +L       +  A     D    R+P      K DK+
Sbjct: 170 SGKENSAEDALKVGVVDAIVAPEKLQAAALDLIQRAISGEFDYKAKRQP------KLDKL 223

Query: 57  EPLGEAREIFKFARAQ---ARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL 113
           + L    ++  F  A+   A +  PN   P+  I  ++   + G    L+ EA  F K+ 
Sbjct: 224 K-LNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAAIFGRDKALEIEAAGFVKMA 282

Query: 114 RSETCKSLVHIFFA-QRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYP 172
           ++   +SL+ +F   Q    K  G  ++    R VK+ A+LG G+MG GIA    +   P
Sbjct: 283 KTSAAQSLIGLFLNDQELKKKAKGYDEVA---RDVKQAAVLGAGIMGGGIAYQSAVKGTP 339

Query: 173 VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIE 232
           +++K++ E+ ++ G+      L  R++KG++T  K  + ++ +   L Y  F +VD+V+E
Sbjct: 340 ILMKDIREEAIQLGLNEASKLLGGRLEKGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVE 399

Query: 233 AIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM 292
           A++EN  +KQ + A++E     + ILASNTSTI ++L+ +     +  VG HFF+P H+M
Sbjct: 400 AVVENPKVKQAVLAEVEANVGENTILASNTSTISISLLAQALKRPENFVGMHFFNPVHMM 459

Query: 293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT 352
           PL+E++R  ++S + +   +   KK+ K PIVV +C GF VNR+ FPY      LV  G 
Sbjct: 460 PLVEVIRGEKSSEEAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGV 519

Query: 353 DLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDK 410
           D   ID+ + KFG PMGP  L D+VG            E FP+R    +   +  + E  
Sbjct: 520 DFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAVDALYEAN 579

Query: 411 RAGETTRKGFYLYDERRKASP----DPEV----KKFIEKARSMSGVAIDPKFAKLSEKDI 462
           R G+   KGFY+Y+  +K  P    DP V    K  + + R            ++S++DI
Sbjct: 580 RLGQKNGKGFYVYETDKKGKPKKVNDPAVLDVLKPIVYEQR------------EVSDEDI 627

Query: 463 VEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
           +  +  P+  E  R   +GI   AA+ D+  + G+GFPP+R
Sbjct: 628 INWMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFR 668

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Pseudomonas syringae pv. tomato (strain DC3000) (taxid: 223283)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A3CYJ4|FADB_SHEB5 Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadB PE=3 SV=1

 Score =  257 bits (656), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/514 (33%), Positives = 253/514 (49%), Gaps = 20/514 (3%)

Query: 4   TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAR 63
           T K  + E+A  +G VDAVVAP  L + A Q   D +  +  W A   +      L +  
Sbjct: 169 TGKDQRAEDALKVGAVDAVVAPQALEAAAIQMLKDAVAEKLDWQARRNRKLSALTLPKLE 228

Query: 64  EIFKFARAQARKQAPNLTH---PIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
            +  F  A+    A    H   P+  + V+E     G    LQ E + F KL +++  K+
Sbjct: 229 AMMSFTTAKGMVFAVAGKHYPAPMAAVSVIEQASTKGRAEALQIEHQAFIKLAKTDVAKA 288

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+ IF   +           G   + V   A+LG G+MG GIA        P+++K++ +
Sbjct: 289 LIGIFLNDQFVKGK--AKKAGKLAKEVNNAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQ 346

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             L+ G+      L ++V +G+ T EK  K ++ +T  LDY + K  D+V+EA++E+  +
Sbjct: 347 PALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAAIKHSDVVVEAVVEHPKI 406

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           K Q+ A++E Y     I+ASNTSTI +NL+ +     +R  G HFF+P H MPL+EI+R 
Sbjct: 407 KAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEIIRG 466

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             +S + I  ++    K+ KTPIVV +C GF VNR+ FPY      L+  G D   ID+ 
Sbjct: 467 EHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKV 526

Query: 361 ITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMI--IPIMQEDKRAGETTR 417
           + K FG PMGP  L D+VG            E FP+R  KS    I +M E+KR G+   
Sbjct: 527 MEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNG 586

Query: 418 KGFYLYDERRKASP----DPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 473
           KGFY+Y    +  P    DP     ++ A          +       DI+     P++ E
Sbjct: 587 KGFYVYSVDSRGKPKKDVDPTSYGLLKDAFG--------ELKAFEADDIIARTMIPMIIE 638

Query: 474 ACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTF 507
             R   EGI    A+ D+  V G+GFPP+R   F
Sbjct: 639 TVRCLEEGIVASPAEADMGLVYGLGFPPFRGGVF 672

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q48GW3|FADB_PSE14 Fatty acid oxidation complex subunit alpha OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadB PE=3 SV=1

 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 166/520 (31%), Positives = 265/520 (50%), Gaps = 41/520 (7%)

Query: 4   TSKPVKGEEAHSLGLVDAVVAPNQL-------VSTARQWALDILEHRRPWVATLYKTDKI 56
           + K    E+A  +G VDAVVAP +L       +  A     D    R+P      K DK+
Sbjct: 170 SGKESSAEDALKVGAVDAVVAPEKLQAAALDLIQRAISGEFDYKAKRQP------KLDKL 223

Query: 57  EPLGEAREIFKFARAQ---ARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL 113
           + L    ++  F  A+   A +  PN   P+  I  ++     G    L+ EA  F K+ 
Sbjct: 224 K-LNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEIEAAGFVKMA 282

Query: 114 RSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPV 173
           ++   +SL+ +F   +   K     D     + VK+ A+LG G+MG GIA    +   P+
Sbjct: 283 KTSAAQSLIGLFLNDQELKKKAKGYDA--VAKDVKQAAVLGAGIMGGGIAYQSAVKGTPI 340

Query: 174 ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEA 233
           ++K++ E+ ++ G+      L  R++KG++T  K  + ++ +   L Y  F +VD+V+EA
Sbjct: 341 LMKDIREEAIQLGLNEASKLLGGRLEKGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVEA 400

Query: 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP 293
           ++EN  +KQ + A++E     H ILASNTSTI ++L+ +     +  VG HFF+P H+MP
Sbjct: 401 VVENPKVKQAVLAEVEANVGEHTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMP 460

Query: 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTD 353
           L+E++R  ++S + +   +   +K+ K PIVV +C GF VNR+ FPY      LV  G D
Sbjct: 461 LVEVIRGEKSSEEAVATTVAYARKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGVD 520

Query: 354 LYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKR 411
              ID+ + KFG PMGP  L D+VG            E FP+R    +  ++  + E KR
Sbjct: 521 FVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSVVDALYEAKR 580

Query: 412 AGETTRKGFYLYDERRKASP----DPEV----KKFIEKARSMSGVAIDPKFAKLSEKDIV 463
            G+   KGFY Y+  +K  P    DP V    K  + + R            ++S++DI+
Sbjct: 581 LGQKNGKGFYAYETDKKGKPKKVNDPAVLDVLKPIVYEQR------------EVSDEDII 628

Query: 464 EMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
             +  P+  E  R   +GI   AA+ D+  + G+GFPP+R
Sbjct: 629 NWMMIPLCLETVRCLEDGIVETAAEADMGLIYGIGFPPFR 668

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) (taxid: 264730)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A9KU91|FADB_SHEB9 Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS195) GN=fadB PE=3 SV=1

 Score =  256 bits (654), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 169/514 (32%), Positives = 253/514 (49%), Gaps = 20/514 (3%)

Query: 4   TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAR 63
           T K  + E+A  +G VDAVVAP  L + A Q   D +  +  W A   +      L +  
Sbjct: 169 TGKDQRAEDALKVGAVDAVVAPQALEAAAIQMLKDAVAEKLDWQARRNRKLSALTLPKLE 228

Query: 64  EIFKFARAQARKQAPNLTH---PIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
            +  F  A+    A    H   P+  + V+E     G    LQ E + F KL +++  K+
Sbjct: 229 AMMSFTTAKGMVFAVAGKHYPAPMAAVSVIEQASTKGRAEALQIEHQAFIKLAKTDVAKA 288

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+ IF   +           G   + V   A+LG G+MG GIA        P+++K++ +
Sbjct: 289 LIGIFLNDQFVKGK--AKKAGKLAKEVNNAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQ 346

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             L+ G+      L ++V +G+ T EK  K ++ +T  LDY + K  D+V+EA++E+  +
Sbjct: 347 PALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAAIKHSDVVVEAVVEHPKI 406

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           K Q+ A++E Y     I+ASNTSTI +NL+ +     +R  G HFF+P H MPL+E++R 
Sbjct: 407 KAQVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRG 466

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             +S + I  ++    K+ KTPIVV +C GF VNR+ FPY      L+  G D   ID+ 
Sbjct: 467 EHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFAAIDKV 526

Query: 361 ITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMI--IPIMQEDKRAGETTR 417
           + K FG PMGP  L D+VG            E FP+R  KS    I +M E+KR G+   
Sbjct: 527 MEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGTDAIDVMFENKRLGQKNG 586

Query: 418 KGFYLYDERRKASP----DPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 473
           KGFY+Y    +  P    DP     ++ A          +       DI+     P++ E
Sbjct: 587 KGFYVYSVDSRGKPKKDVDPTSYGLLKDAFG--------ELKAFEADDIIARTMIPMIIE 638

Query: 474 ACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTF 507
             R   EGI    A+ D+  V G+GFPP+R   F
Sbjct: 639 TVRCLEEGIVASPAEADMGLVYGLGFPPFRGGVF 672

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Shewanella baltica (strain OS195) (taxid: 399599)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
224107106	726	predicted protein [Populus trichocarpa]	0.940	0.692	0.856	0.0
225431755	724	PREDICTED: glyoxysomal fatty acid beta-o	0.940	0.694	0.868	0.0
296083347	765	unnamed protein product [Vitis vinifera]	0.940	0.657	0.868	0.0
224130412	726	predicted protein [Populus trichocarpa]	0.940	0.692	0.854	0.0
356521845	724	PREDICTED: glyoxysomal fatty acid beta-o	0.940	0.694	0.838	0.0
351723429	723	peroxisomal fatty acid beta-oxidation mu	0.940	0.695	0.833	0.0
357478819	724	Glyoxysomal fatty acid beta-oxidation mu	0.940	0.694	0.821	0.0
171854673	725	putative glyoxysomal fatty acid beta-oxi	0.940	0.693	0.825	0.0
356564184	722	PREDICTED: peroxisomal fatty acid beta-o	0.940	0.696	0.807	0.0
297829230	723	hypothetical protein ARALYDRAFT_478006 [	0.940	0.695	0.801	0.0

>gi|224107106|ref|XP_002314377.1| predicted protein [Populus trichocarpa] gi|222863417|gb|EEF00548.1| predicted protein [Populus trichocarpa]

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/503 (85%), Positives = 475/503 (94%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MMLTSKPVKGEEAH+LGLVDAVV+PN+LVSTARQWALDILE RRPW+A+LYKT+K++ LG
Sbjct: 167 MMLTSKPVKGEEAHALGLVDAVVSPNELVSTARQWALDILERRRPWIASLYKTEKLDSLG 226

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREIFKFAR Q RK+APNLTHPIVCIDV+E G+VSGPR GL KE E F +L+RS+TCKS
Sbjct: 227 EAREIFKFAREQVRKRAPNLTHPIVCIDVIEHGIVSGPRDGLYKELESFHELVRSDTCKS 286

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+HIFFAQRGT+KVPG+TDLGL PRRVKKVA+LGGGLMGSGIATAL+LSNYPVILKEVN 
Sbjct: 287 LIHIFFAQRGTTKVPGITDLGLVPRRVKKVAVLGGGLMGSGIATALVLSNYPVILKEVNN 346

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           +FL+AGIGRVRANLQSRVKKG+MTQEKFEKT+SLL G LDYESFKDVDMVIEA+IENVSL
Sbjct: 347 QFLQAGIGRVRANLQSRVKKGRMTQEKFEKTMSLLKGALDYESFKDVDMVIEAVIENVSL 406

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIF+DLEKYCPPHCILASNTSTIDLNLIG++T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 407 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGKQTKSQDRIIGAHFFSPAHVMPLLEIVRT 466

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            QTSPQVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA LLVE G DLY ID+ 
Sbjct: 467 KQTSPQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAALLLVEHGADLYQIDKV 526

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATG QF+ NFPERTYKSM+IP+MQEDKRAGETTRKGF
Sbjct: 527 ITKFGMPMGPFRLVDLVGFGVAIATGTQFVVNFPERTYKSMLIPLMQEDKRAGETTRKGF 586

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           YLYD+RRKA PDPE++K+IEKAR++SGVA DPK AKL EKDIVEMIFFPVVNEACRVFAE
Sbjct: 587 YLYDDRRKAKPDPELRKYIEKARNISGVANDPKLAKLPEKDIVEMIFFPVVNEACRVFAE 646

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDI+S+MGMGFPPYR
Sbjct: 647 GIAVKAADLDISSLMGMGFPPYR 669

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431755|ref|XP_002270067.1| PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Vitis vinifera]

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/503 (86%), Positives = 470/503 (93%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MML SKPVKG +AHSLGLVDAVVAP+QLV TARQWALDILE RRPWV +LYKTDK+EPLG
Sbjct: 165 MMLMSKPVKGVDAHSLGLVDAVVAPDQLVKTARQWALDILECRRPWVHSLYKTDKLEPLG 224

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFAR QA+KQAPNL HP++CIDV+EAG+VSGP AGL KEAE FQ+LL S+ CKS
Sbjct: 225 EAREILKFARTQAQKQAPNLKHPLLCIDVIEAGIVSGPVAGLWKEAEAFQELLHSDICKS 284

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVHIFFAQRGTSKVPG+ DLGL PRR+ KVAILGGGLMGSGIATAL+LSNYPVILKEVNE
Sbjct: 285 LVHIFFAQRGTSKVPGIADLGLVPRRINKVAILGGGLMGSGIATALMLSNYPVILKEVNE 344

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGIGRVRANLQSRVKKG MTQEKFEKT SLL GVLDYESFKDVDMVIEA+IENVSL
Sbjct: 345 KFLQAGIGRVRANLQSRVKKGAMTQEKFEKTFSLLKGVLDYESFKDVDMVIEAVIENVSL 404

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEK+CPPHCILASNTSTIDLNLIGE+T S DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 405 KQQIFADLEKFCPPHCILASNTSTIDLNLIGEKTRSHDRIVGAHFFSPAHVMPLLEIVRT 464

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            +TSPQVIVDLLDIGKKIKKTP+VVGNCTGFAVNRMF PYTQAA LLVE G D+Y IDRA
Sbjct: 465 QRTSPQVIVDLLDIGKKIKKTPVVVGNCTGFAVNRMFSPYTQAALLLVEHGADVYQIDRA 524

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATG QF++NFPERTYKSM+IPIMQEDKRAGETTRKGF
Sbjct: 525 ITKFGMPMGPFRLVDLVGFGVAIATGGQFVQNFPERTYKSMLIPIMQEDKRAGETTRKGF 584

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           Y+YD++RKASPDPE+KK++EKAR +SGVAIDPK  KLS+KDIVEMIFFPVVNEACRV+AE
Sbjct: 585 YVYDDKRKASPDPELKKYVEKARGISGVAIDPKLMKLSDKDIVEMIFFPVVNEACRVYAE 644

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDIA VMGMGFPPYR
Sbjct: 645 GIAVKAADLDIAGVMGMGFPPYR 667

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083347|emb|CBI22983.3| unnamed protein product [Vitis vinifera]

 Score =  913 bits (2360), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/503 (86%), Positives = 470/503 (93%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MML SKPVKG +AHSLGLVDAVVAP+QLV TARQWALDILE RRPWV +LYKTDK+EPLG
Sbjct: 206 MMLMSKPVKGVDAHSLGLVDAVVAPDQLVKTARQWALDILECRRPWVHSLYKTDKLEPLG 265

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFAR QA+KQAPNL HP++CIDV+EAG+VSGP AGL KEAE FQ+LL S+ CKS
Sbjct: 266 EAREILKFARTQAQKQAPNLKHPLLCIDVIEAGIVSGPVAGLWKEAEAFQELLHSDICKS 325

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVHIFFAQRGTSKVPG+ DLGL PRR+ KVAILGGGLMGSGIATAL+LSNYPVILKEVNE
Sbjct: 326 LVHIFFAQRGTSKVPGIADLGLVPRRINKVAILGGGLMGSGIATALMLSNYPVILKEVNE 385

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGIGRVRANLQSRVKKG MTQEKFEKT SLL GVLDYESFKDVDMVIEA+IENVSL
Sbjct: 386 KFLQAGIGRVRANLQSRVKKGAMTQEKFEKTFSLLKGVLDYESFKDVDMVIEAVIENVSL 445

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEK+CPPHCILASNTSTIDLNLIGE+T S DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 446 KQQIFADLEKFCPPHCILASNTSTIDLNLIGEKTRSHDRIVGAHFFSPAHVMPLLEIVRT 505

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            +TSPQVIVDLLDIGKKIKKTP+VVGNCTGFAVNRMF PYTQAA LLVE G D+Y IDRA
Sbjct: 506 QRTSPQVIVDLLDIGKKIKKTPVVVGNCTGFAVNRMFSPYTQAALLLVEHGADVYQIDRA 565

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATG QF++NFPERTYKSM+IPIMQEDKRAGETTRKGF
Sbjct: 566 ITKFGMPMGPFRLVDLVGFGVAIATGGQFVQNFPERTYKSMLIPIMQEDKRAGETTRKGF 625

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           Y+YD++RKASPDPE+KK++EKAR +SGVAIDPK  KLS+KDIVEMIFFPVVNEACRV+AE
Sbjct: 626 YVYDDKRKASPDPELKKYVEKARGISGVAIDPKLMKLSDKDIVEMIFFPVVNEACRVYAE 685

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDIA VMGMGFPPYR
Sbjct: 686 GIAVKAADLDIAGVMGMGFPPYR 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130412|ref|XP_002328602.1| predicted protein [Populus trichocarpa] gi|222838584|gb|EEE76949.1| predicted protein [Populus trichocarpa]

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/503 (85%), Positives = 473/503 (94%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MMLTSKPVKGEEAH+LGLVDAVV+PN+LVSTARQWALDI E RRPW+A+LYKT+K++ LG
Sbjct: 167 MMLTSKPVKGEEAHALGLVDAVVSPNELVSTARQWALDIFECRRPWIASLYKTEKLDSLG 226

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREIFKFARAQA+K+APNL HPIVCI+VVE G+VSGPRAGL KE E FQ+L+RS+  KS
Sbjct: 227 EAREIFKFARAQAQKRAPNLLHPIVCINVVEHGIVSGPRAGLYKEFESFQELVRSDISKS 286

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVHIFFA  GT+KVPG+TDLG  PR VKKVA+LGGGLMGSGIATALILSNYPVILKEVN+
Sbjct: 287 LVHIFFALHGTTKVPGITDLGFVPRLVKKVAVLGGGLMGSGIATALILSNYPVILKEVND 346

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           +FL+AGIGRVRANLQSRVKKGKMTQEKFEKT+SLL G LDYESFKDVDMVIEA+IENVSL
Sbjct: 347 QFLQAGIGRVRANLQSRVKKGKMTQEKFEKTMSLLKGSLDYESFKDVDMVIEAVIENVSL 406

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIF+DLEKYCPPHCILASNTSTIDLNLIG++T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 407 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGKQTKSQDRIIGAHFFSPAHVMPLLEIVRT 466

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            QTSPQVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA  LVE G DLY IDR 
Sbjct: 467 KQTSPQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAIFLVEHGVDLYQIDRV 526

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRLADLVGFGVAIATGMQF+ENFPERTYKSM++P+MQEDKR GETT KGF
Sbjct: 527 ISKFGMPMGPFRLADLVGFGVAIATGMQFVENFPERTYKSMLLPLMQEDKRGGETTCKGF 586

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           YLYD+RRKA PDPE++K+IEKARS+SGVA+DPK AKL EKDIVEMIFFPVVNEACRVFAE
Sbjct: 587 YLYDDRRKAKPDPELRKYIEKARSISGVAVDPKLAKLPEKDIVEMIFFPVVNEACRVFAE 646

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDIAS+MGMGFPPYR
Sbjct: 647 GIAVKAADLDIASLMGMGFPPYR 669

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521845|ref|XP_003529561.1| PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a-like [Glycine max]

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/503 (83%), Positives = 473/503 (94%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+L SKPVKG+EA SLGLVD +V+PN LV+TARQWALD+L HRRPW+A+LYKT+K+EPLG
Sbjct: 164 MILASKPVKGKEAFSLGLVDGLVSPNDLVNTARQWALDMLGHRRPWIASLYKTEKLEPLG 223

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFARAQARK+APNL HP+VCIDV+EAG+V+GPRAGL KEAE F+ L+RS+TCKS
Sbjct: 224 EAREILKFARAQARKRAPNLQHPLVCIDVIEAGIVAGPRAGLWKEAEAFEGLVRSDTCKS 283

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVH+FFAQRGTSKVPGVTD GLAPR+VKKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LVHVFFAQRGTSKVPGVTDCGLAPRQVKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGI R++ANLQSRVKKGK+T+E FEKTISLL G LDYESF+DVD+VIEA+IEN+SL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGKLTKENFEKTISLLKGSLDYESFRDVDLVIEAVIENISL 403

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIF+DLEKYCPPHCILASNTSTIDLNLIGE+T S+DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 404 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGEKTKSQDRIVGAHFFSPAHVMPLLEIVRT 463

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            QTSPQVIVD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA  LLVERG D+Y IDR 
Sbjct: 464 KQTSPQVIVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLLLVERGADVYQIDRI 523

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRLADLVGFGVAIATG QFI+NFPERTYKSM+IP++QED RAGETTRKGF
Sbjct: 524 ITKFGMPMGPFRLADLVGFGVAIATGTQFIQNFPERTYKSMLIPLLQEDNRAGETTRKGF 583

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           YLYD++RKASPDPE+K +IEKARS+SGV++DPK AKL EKDI+EMIFFPVVNEACRV  E
Sbjct: 584 YLYDDKRKASPDPELKNYIEKARSISGVSVDPKLAKLQEKDIIEMIFFPVVNEACRVLDE 643

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDI+++MGMGFPPYR
Sbjct: 644 GIAVKAADLDISAIMGMGFPPYR 666

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723429|ref|NP_001234975.1| peroxisomal fatty acid beta-oxidation multifunctional protein [Glycine max] gi|167962162|dbj|BAG09370.1| peroxisomal fatty acid beta-oxidation multifunctional protein [Glycine max]

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/503 (83%), Positives = 471/503 (93%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+L SKPVKG+EA SLGLVD +V+PN LV+TARQWALD+L HRRPW+A+LYKT+K+EPLG
Sbjct: 164 MILASKPVKGKEAFSLGLVDGLVSPNDLVNTARQWALDMLGHRRPWIASLYKTEKLEPLG 223

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFARAQARK+APNL HP+VCIDV+EAG+V+GPRAGL KEAE F+ L+RS+TCKS
Sbjct: 224 EAREILKFARAQARKRAPNLQHPLVCIDVIEAGIVAGPRAGLWKEAEAFEGLVRSDTCKS 283

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LVH+FFAQRGTSKVPGVTD GLAPR+VKKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LVHVFFAQRGTSKVPGVTDCGLAPRQVKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGI R++ANLQSRVKKGK+T+E FEKTISLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGKLTKENFEKTISLLKGSLDYESFRDVDMVIEAVIENISL 403

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIF+DLEKYCPPHCILASNTSTIDLNLIGE+T ++DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 404 KQQIFSDLEKYCPPHCILASNTSTIDLNLIGEKTKTQDRIVGAHFFSPAHVMPLLEIVRT 463

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            QTS QVIVD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA  LLVERG D+Y IDR 
Sbjct: 464 KQTSAQVIVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLLLVERGADVYQIDRV 523

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATGMQFI+NFPERTYKSM+I ++QEDKRAGETT KGF
Sbjct: 524 ITKFGMPMGPFRLMDLVGFGVAIATGMQFIQNFPERTYKSMLISLLQEDKRAGETTHKGF 583

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           YLY+++RKASPDPE+K +IEKARS+SGV++DPK AKL EKDI+EMIFFPVVNEACRV  E
Sbjct: 584 YLYNDKRKASPDPELKNYIEKARSISGVSVDPKLAKLQEKDIIEMIFFPVVNEACRVLDE 643

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDI+++MGMGFPPYR
Sbjct: 644 GIAVKAADLDISAIMGMGFPPYR 666

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478819|ref|XP_003609695.1| Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Medicago truncatula] gi|355510750|gb|AES91892.1| Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Medicago truncatula]

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/504 (82%), Positives = 464/504 (92%), Gaps = 1/504 (0%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MMLTSKPVKG++A S GLVD +V+P+QLV+TARQWALDIL+ RRPW+A+LYKT+KIEPLG
Sbjct: 164 MMLTSKPVKGKDAFSSGLVDGLVSPDQLVNTARQWALDILDRRRPWIASLYKTEKIEPLG 223

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFARAQARKQAPNL HP+VCIDV+EAG+VSGPRAGL KEAE F  L++S+TCKS
Sbjct: 224 EAREILKFARAQARKQAPNLKHPLVCIDVIEAGIVSGPRAGLWKEAEAFDALVQSDTCKS 283

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+HIFFAQRGTSKVPGVTD GL PR VKKVAILGGGLMGSGIATALILSNY VILKEVNE
Sbjct: 284 LIHIFFAQRGTSKVPGVTDRGLVPRPVKKVAILGGGLMGSGIATALILSNYSVILKEVNE 343

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AGI R++ANLQSRVKKG +TQE+FEK  SL+ G LDY+SF+DVDMVIEA+IENVSL
Sbjct: 344 KFLDAGINRIKANLQSRVKKGNLTQERFEKAFSLVKGSLDYDSFRDVDMVIEAVIENVSL 403

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFF-SPAHVMPLLEIVR 299
           KQQIFADLEKYCPPHCIL SNTSTIDL+LIGE+T S+DRI+GAHFF  PAHVMPLLEIVR
Sbjct: 404 KQQIFADLEKYCPPHCILGSNTSTIDLDLIGEKTKSQDRIIGAHFFRCPAHVMPLLEIVR 463

Query: 300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDR 359
           T +TSPQVIVDLLDI KKIKKTP+VVGNCTGFAVNR+FFPYTQA  LLVERG D+Y ID+
Sbjct: 464 TKRTSPQVIVDLLDISKKIKKTPVVVGNCTGFAVNRVFFPYTQATLLLVERGADVYQIDK 523

Query: 360 AITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKG 419
           A+TKFGMPMGP RL DLVGFGVA+ATG QF++NFPERTYKSM+IP++QEDKRAGETTRKG
Sbjct: 524 AVTKFGMPMGPLRLCDLVGFGVAVATGSQFVQNFPERTYKSMLIPLLQEDKRAGETTRKG 583

Query: 420 FYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFA 479
           FYLYD+RRKASPDPE+KKFIEKARS+SGV++DP   KL EKDI+EMIFFPVVNEACRV  
Sbjct: 584 FYLYDDRRKASPDPELKKFIEKARSISGVSVDPMLVKLQEKDIIEMIFFPVVNEACRVLD 643

Query: 480 EGIAVKAADLDIASVMGMGFPPYR 503
           EGI VKAADLDIA++MGMGFPPYR
Sbjct: 644 EGIVVKAADLDIAAIMGMGFPPYR 667

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171854673|dbj|BAG16526.1| putative glyoxysomal fatty acid beta-oxidation multifunctional protein [Capsicum chinense]

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/503 (82%), Positives = 464/503 (92%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVKGEEA +LGLVDAVV  NQL+ TAR+WALDILE R+PWVA+L+KTDKIEPLG
Sbjct: 166 MILTSKPVKGEEAVNLGLVDAVVPSNQLLGTARKWALDILECRKPWVASLHKTDKIEPLG 225

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREIFKFAR Q RKQAPNL H +V IDV+E G+VSGP AGL KEAE FQ LL S+TCK+
Sbjct: 226 EAREIFKFARVQTRKQAPNLQHLLVVIDVIEEGIVSGPLAGLWKEAEAFQALLHSDTCKA 285

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           LV++FFAQR T+KVPGVTDLGL PRR+KKVAILGGGLMGSGIATAL+ S YPVILKEVN+
Sbjct: 286 LVNVFFAQRATTKVPGVTDLGLKPRRIKKVAILGGGLMGSGIATALLRSGYPVILKEVND 345

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFL+AG+GRV+ANLQS VKKGKM+QEKFEKT+SLL G LDYE F+DVDMVIEA+IENVSL
Sbjct: 346 KFLQAGLGRVKANLQSSVKKGKMSQEKFEKTLSLLKGALDYEGFRDVDMVIEAVIENVSL 405

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQ+FADLEKYCP HCILASNTSTIDLNLIGE+T S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct: 406 KQQVFADLEKYCPSHCILASNTSTIDLNLIGEKTKSQDRIIGAHFFSPAHVMPLLEIVRT 465

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            +TSPQ+IVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA LLVERG D++ IDR 
Sbjct: 466 QKTSPQIIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAALLLVERGADVFRIDRI 525

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATG QF+ NFPERTYKSM+IP+MQEDKRAGETTRKGF
Sbjct: 526 ITKFGMPMGPFRLCDLVGFGVAIATGGQFVMNFPERTYKSMLIPLMQEDKRAGETTRKGF 585

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           Y+YD+RRKASPDPE+KK+IEKAR MSGV ID K AKLS+KDI+EMIFFPVVNEACRV AE
Sbjct: 586 YVYDDRRKASPDPEIKKYIEKAREMSGVTIDHKMAKLSDKDIIEMIFFPVVNEACRVLAE 645

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVK++DLDI+++MGMGFPPYR
Sbjct: 646 GIAVKSSDLDISAIMGMGFPPYR 668

Source: Capsicum chinense

Species: Capsicum chinense

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564184|ref|XP_003550336.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein MFP2-like [Glycine max]

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/503 (80%), Positives = 457/503 (90%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           MMLTSKPVKG+EA SLGLVD +++P+ LV+TA QWALDI+  RRPW+A+LYKTDK+EPLG
Sbjct: 163 MMLTSKPVKGKEAFSLGLVDGLMSPDDLVNTACQWALDIMGRRRPWIASLYKTDKLEPLG 222

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFARAQ +K+APNL HP+VCIDV+EAGVV+GPRAGL KE E  + L++S+T KS
Sbjct: 223 EAREILKFARAQVQKRAPNLQHPLVCIDVIEAGVVAGPRAGLWKEVEASEGLIKSDTSKS 282

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGTSKVPGVTD GL PR VKKVAI+GGGLMGSGIATALILS+YP+ILKEVNE
Sbjct: 283 LIHVFFSQRGTSKVPGVTDCGLVPRHVKKVAIIGGGLMGSGIATALILSSYPIILKEVNE 342

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGI R++ANLQSRVKKGK+TQE FE T+SLL G LDYESFKDVDMVIEA++ENVSL
Sbjct: 343 KFLEAGINRIKANLQSRVKKGKLTQENFENTVSLLKGTLDYESFKDVDMVIEAVVENVSL 402

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCPPHCILASNTSTIDLNLIGERT S+DRIVGAHFFSPAHVMPLLEIVRT
Sbjct: 403 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTKSQDRIVGAHFFSPAHVMPLLEIVRT 462

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
            QTS QV+VD+LDI KKIKKTP+VVGNCTGFAVNRMFFPYTQA   LVE G D+Y IDR 
Sbjct: 463 KQTSAQVVVDVLDISKKIKKTPVVVGNCTGFAVNRMFFPYTQAGLFLVEHGADVYQIDRV 522

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           ITKFGMPMGPFRL DLVGFGVAIATGMQFI+NFPERTYKSM+IP++QEDKRAGETTRKGF
Sbjct: 523 ITKFGMPMGPFRLVDLVGFGVAIATGMQFIQNFPERTYKSMLIPLLQEDKRAGETTRKGF 582

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           YLYD++ K SPDPE+K +IEKARS +GV++DPK  KL EKDI+EM FFPVVNEACRV  E
Sbjct: 583 YLYDDKCKPSPDPELKNYIEKARSFTGVSVDPKLVKLQEKDIIEMTFFPVVNEACRVLDE 642

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVK +DLDI++VMGMGFPPYR
Sbjct: 643 GIAVKGSDLDISAVMGMGFPPYR 665

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829230|ref|XP_002882497.1| hypothetical protein ARALYDRAFT_478006 [Arabidopsis lyrata subsp. lyrata] gi|297328337|gb|EFH58756.1| hypothetical protein ARALYDRAFT_478006 [Arabidopsis lyrata subsp. lyrata]

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/503 (80%), Positives = 459/503 (91%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVK EE HSLGL+DAV+ P +L++TAR+WALDI+E R+PWV+++ KTDK+  LG
Sbjct: 164 MILTSKPVKAEEGHSLGLIDAVMPPAELLTTARRWALDIVERRKPWVSSVSKTDKLPSLG 223

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI KFAR Q +K+APN+ HP++C+D +E G+VSGPRAGL+KEAE   ++++ +T KS
Sbjct: 224 EAREILKFARGQTQKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKS 283

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGT+KVPGVTD GLAPR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 284 LIHVFFSQRGTAKVPGVTDRGLAPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 343

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 344 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 403

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 404 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 463

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
           N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA  LVE G D YLIDRA
Sbjct: 464 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 523

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRL DLVGFGVAIAT  QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 524 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 583

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           YLYD++RKA PDPE+KK+IEKARS+SGV +DPK A LSEK+I+EM FFPVVNEACRVFAE
Sbjct: 584 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKEIIEMTFFPVVNEACRVFAE 643

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDIA +MGMGFPPYR
Sbjct: 644 GIAVKAADLDIAGIMGMGFPPYR 666

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
TAIR|locus:2077542	725	MFP2 "multifunctional protein	0.940	0.693	0.801	2.6e-221
UNIPROTKB|Q39659	725	Q39659 "Glyoxysomal fatty acid	0.940	0.693	0.795	1.5e-218
UNIPROTKB|O49809	725	O49809 "Glyoxysomal fatty acid	0.940	0.693	0.785	5e-218
TAIR|locus:2119891	721	AIM1 "ABNORMAL INFLORESCENCE M	0.940	0.697	0.568	2.4e-156
UNIPROTKB|Q8W1L6	726	MFP "Peroxisomal fatty acid be	0.940	0.692	0.564	8.2e-154
TIGR_CMR|SPO_0772	698	SPO_0772 "enoyl-CoA hydratase/	0.910	0.697	0.362	1.2e-74
UNIPROTKB|Q48GW3	721	fadB "Fatty acid oxidation com	0.917	0.680	0.318	7.7e-71
TIGR_CMR|SO_0021	716	SO_0021 "fatty oxidation compl	0.910	0.680	0.343	2.1e-70
TIGR_CMR|SO_3088	707	SO_3088 "fatty oxidation compl	0.908	0.687	0.345	8e-69
UNIPROTKB|P28793	715	fadB "Fatty acid oxidation com	0.910	0.681	0.330	1.5e-67

TAIR|locus:2077542 MFP2 "multifunctional protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2137 (757.3 bits), Expect = 2.6e-221, P = 2.6e-221
 Identities = 403/503 (80%), Positives = 456/503 (90%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+  R+PWV+++ KTDK+ PLG
Sbjct:   166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225

Query:    61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
             EAREI  FA+AQ  K+APN+ HP++C+D +E G+VSGPRAGL+KEAE   ++++ +T K 
Sbjct:   226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285

Query:   121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
             L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct:   286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345

Query:   181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct:   346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405

Query:   241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
             KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct:   406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465

Query:   301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA  LVE G D YLIDRA
Sbjct:   466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525

Query:   361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
             I+KFGMPMGPFRL DLVGFGVAIAT  QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct:   526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585

Query:   421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
             YLYD++RKA PDPE+KK+IEKARS+SGV +DPK A LSEKDI+EM FFPVVNEACRVFAE
Sbjct:   586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAE 645

Query:   481 GIAVKAADLDIASVMGMGFPPYR 503
             GIAVKAADLDIA +MGMGFPPYR
Sbjct:   646 GIAVKAADLDIAGIMGMGFPPYR 668

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA;IMP

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0006635 "fatty acid beta-oxidation" evidence=IEP;RCA

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|Q39659 Q39659 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Cucumis sativus (taxid:3659)]

 Score = 2111 (748.2 bits), Expect = 1.5e-218, P = 1.5e-218
 Identities = 400/503 (79%), Positives = 451/503 (89%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             MMLTSKP+KG+EAHSLGLVDA+V P +L++TAR+WAL+ILE RRPWV +L++TDK+E L 
Sbjct:   166 MMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLA 225

Query:    61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
             EAR+IF  ARAQA+KQ PNL H I CID VE GVVSGPRAGL KEAE+FQ LL S+TCKS
Sbjct:   226 EARKIFNLARAQAKKQYPNLKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKS 285

Query:   121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
             L+HIFFAQR T+KVPGVTDLGL PR++KKVAI+GGGLMGSGIATALILSNY V+LKEVN+
Sbjct:   286 LIHIFFAQRSTTKVPGVTDLGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVND 345

Query:   181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             KFL+AGI RVRANLQSRVKKG MT EKFEK+ISLL GVL+YESFKDVDMVIEA+IENVSL
Sbjct:   346 KFLQAGIDRVRANLQSRVKKGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSL 405

Query:   241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
             KQQIF+DLEKYCPPHC+LA+NTSTIDL LIGER  S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct:   406 KQQIFSDLEKYCPPHCMLATNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRT 465

Query:   301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
               T+ QVIVDLLD+GK IKKTP+VVGNCTGFAVNRMFFPY+QAA LL E G D Y IDRA
Sbjct:   466 KHTAAQVIVDLLDVGKNIKKTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRA 525

Query:   361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
             I+KFGMPMGPFRL DLVGFGVA AT  QF++ FPERTYKSM+IP+MQEDK AGE+TRKGF
Sbjct:   526 ISKFGMPMGPFRLCDLVGFGVAAATASQFVQAFPERTYKSMLIPLMQEDKNAGESTRKGF 585

Query:   421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
             Y+YD+ RKA P+PE+KK+IEKAR+ SGV++DPK  KL EKDIVEMIFFPVVNEACRV AE
Sbjct:   586 YVYDKNRKAGPNPELKKYIEKARNSSGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAE 645

Query:   481 GIAVKAADLDIASVMGMGFPPYR 503
             GIAVKAADLDIA VMGMGFP YR
Sbjct:   646 GIAVKAADLDIAGVMGMGFPSYR 668

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=IDA

GO:0009514 "glyoxysome" evidence=NAS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

UNIPROTKB|O49809 O49809 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Brassica napus (taxid:3708)]

 Score = 2106 (746.4 bits), Expect = 5.0e-218, P = 5.0e-218
 Identities = 395/503 (78%), Positives = 451/503 (89%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             M+LTSKPVK EE HSLGL+DAVV P +L++ AR+WALDI E R+PWV+++ KTDK+ PLG
Sbjct:   166 MILTSKPVKAEEGHSLGLIDAVVPPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLG 225

Query:    61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
             EAREI KFA+ Q R+QAPN+ HP++C++ VE G+VSG RAGL+KEA+   +++  +T K 
Sbjct:   226 EAREILKFAKDQTRRQAPNMKHPLMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKG 285

Query:   121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
             L+H+FF+QRGT+KVPGVTD GL PR++ KVAI+GGGLMGSGIATALILSNY VILKEVNE
Sbjct:   286 LIHVFFSQRGTTKVPGVTDRGLVPRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNE 345

Query:   181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             KFLEAGIGRV+ANLQSRVKKGKM++EKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct:   346 KFLEAGIGRVKANLQSRVKKGKMSKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405

Query:   241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
             KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRI+GAHFFSPAHVMPLLEIVRT
Sbjct:   406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRT 465

Query:   301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
             N TS QVIVDLLD+GKKI+KTP+VVGNCTGFAVNRMFFPYTQAA  LVE GTD YLID+A
Sbjct:   466 NHTSAQVIVDLLDVGKKIRKTPVVVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKA 525

Query:   361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
             ++KFGMPMGPFRL DLVGFGVAIAT  QFIENFPERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct:   526 VSKFGMPMGPFRLCDLVGFGVAIATATQFIENFPERTYKSMIIPLMQEDKRAGEATRKGF 585

Query:   421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
             YLYD+RRKA PDPE+K +I+KARS+SG   DPK  KLSEK+I+EM FFPVVNEACRVFAE
Sbjct:   586 YLYDDRRKAKPDPEIKNYIDKARSVSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAE 645

Query:   481 GIAVKAADLDIASVMGMGFPPYR 503
             GIAVKAADLDIA + GMGFPPYR
Sbjct:   646 GIAVKAADLDIAGIFGMGFPPYR 668

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=ISS

TAIR|locus:2119891 AIM1 "ABNORMAL INFLORESCENCE MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
 Identities = 286/503 (56%), Positives = 379/503 (75%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             M+L SK +  EE H LGL+DA+V P  ++ST+R+WALDI E R+P++ +L++TDKI  L 
Sbjct:   163 MILLSKSISSEEGHKLGLIDALVPPGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLS 222

Query:    61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
             EAR I K +R  A+K APN+     CI+V+E G++ G  +G+ KEAE F++L+ S+T K 
Sbjct:   223 EARAILKNSRQLAKKIAPNMPQHHACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKG 282

Query:   121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
             LVH+FFAQR TSKVP VTD+GL PR +KKVA++GGGLMGSGIATAL+LSN  V+LKE+N 
Sbjct:   283 LVHVFFAQRATSKVPNVTDVGLKPRPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINS 342

Query:   181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             +FL  GI  V AN++S V +GK+TQ+K  K +SL  GVLDY  F DVDMVIEA+IEN+ L
Sbjct:   343 EFLMKGIKSVEANMKSLVSRGKLTQDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQL 402

Query:   241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
             KQ IF ++EK C PHCILASNTSTIDL++IGE+T SKDRIVGAHFFSPAH+MPLLEIVR+
Sbjct:   403 KQNIFKEIEKVCSPHCILASNTSTIDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRS 462

Query:   301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
               TS QVI+DL+ +GK IKK P+VVGNC GFAVNR FFPY+QAA +L   G DL+ ID  
Sbjct:   463 KNTSAQVILDLMAVGKAIKKVPVVVGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSV 522

Query:   361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
             IT FG+P+GPF+L DL G G+ +A G  + + + +R ++S +  ++ +  R G+   +G+
Sbjct:   523 ITSFGLPLGPFQLGDLAGHGIGLAVGPIYAKVYGDRMFRSPMTELLLKSGRNGKINGRGY 582

Query:   421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
             Y+Y++  K  PDP V   +EK+R ++ +    K   +++K+IVEMI FPVVNEACRV  E
Sbjct:   583 YIYEKGSKPKPDPSVLSIVEKSRKLTNIMPGGKPISVTDKEIVEMILFPVVNEACRVLDE 642

Query:   481 GIAVKAADLDIASVMGMGFPPYR 503
             G+ ++A+DLDIASV+GM FP YR
Sbjct:   643 GVVIRASDLDIASVLGMSFPSYR 665

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP;IDA

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q8W1L6 MFP "Peroxisomal fatty acid beta-oxidation multifunctional protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1500 (533.1 bits), Expect = 8.2e-154, P = 8.2e-154
 Identities = 284/503 (56%), Positives = 377/503 (74%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             MML SK +  +E    GLVDA+ +P++L+  +R WAL+I  +R+PW+ +L +TD++  L 
Sbjct:   163 MMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLS 222

Query:    61 EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
             EAR +   AR QA+K A NL     C+DV+E GV+ G  AG+ KEA+ F++L+ S T K+
Sbjct:   223 EARSVLNSARQQAKKVAANLPQHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKA 282

Query:   121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
             LVH FFAQR T+KVPGVTD+ L PR+++KVA++GGGLMGSGIATAL++SN  V+LKEVN 
Sbjct:   283 LVHAFFAQRLTTKVPGVTDVQLKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNP 342

Query:   181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
             +FL+ G   + ANL+  VK+G +T++K  K +SLL G LDY  FKDVDMVIEA+IE + L
Sbjct:   343 QFLQRGQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPL 402

Query:   241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
             KQ IF+DLEK CPPHCILA+NTSTIDLN++GE+T S+DRI+GAHFFSPAH+MPLLEIVRT
Sbjct:   403 KQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRT 462

Query:   301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
              +TSPQ I+DL+ +GK IKK P+VVGNCTGFAVNR FFPYTQ + LLV  G D++ IDR 
Sbjct:   463 EKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRV 522

Query:   361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
             I+ FGMPMGPF+L DL G+GVA+A    +   F  R   S ++ +M ++ R G++  KG+
Sbjct:   523 ISSFGMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGY 582

Query:   421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
             YLY++  K  PDP V+  I++ R  +      K   LS++DI+EMIFFPVVNEACRV  E
Sbjct:   583 YLYEKGGKPKPDPSVQVVIDEYRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDE 642

Query:   481 GIAVKAADLDIASVMGMGFPPYR 503
              + ++A+DLDIAS++GMGFP +R
Sbjct:   643 NVVIRASDLDIASILGMGFPKFR 665

GO:0003729 "mRNA binding" evidence=IDA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=NAS

GO:0006635 "fatty acid beta-oxidation" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0018812 "3-hydroxyacyl-CoA dehydratase activity" evidence=IDA

TIGR_CMR|SPO_0772 SPO_0772 "enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 185/510 (36%), Positives = 273/510 (53%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVA--PNQL-VSTARQWALDILEHRRPWVATLYKTDKIE 57
             M+ T + V+ +EA  LG++D V    P ++ +S  R+  LD    RRP V  +       
Sbjct:   151 MITTGRHVRADEALRLGVIDRVAEGEPREIGLSYLRE-LLDEGAPRRP-VGEM------- 201

Query:    58 PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGP-RAGLQKEAEDFQKLLRSE 116
             P     +      A  RK    L+ P   +  V+A   +    AGL++E E F +L+ S+
Sbjct:   202 PAPAPVDFDAIYAAVLRKGRGQLS-PATAVRAVQAACEAESFAAGLKRERELFMELMNSD 260

Query:   117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILK 176
               + L+H FFA R   K+P +   G+APR +  + ++GGG MG+GIATA +LS   V + 
Sbjct:   261 QREGLIHAFFADRAVGKLPELE--GVAPRPLAAIGVIGGGTMGAGIATAALLSGLSVTML 318

Query:   177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK-TISLLTGVLDYESFKDVDMVIEAII 235
             E+  +  EA  GR+  NL   +K+GK+T ++F+  T   LT  +DY++  D D+VIEA+ 
Sbjct:   319 EMTPEAAEAAKGRIEGNLSGALKRGKLTAQQFDNLTTKALTLAIDYDALADADLVIEAVF 378

Query:   236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
             E++ +K+Q+F  L+  C P  +LASNTS +D+N I   T     ++G HFFSPAHVM LL
Sbjct:   379 EDMEVKKQVFTKLDAVCKPGAVLASNTSYLDINQIAAVTSRPQDVLGLHFFSPAHVMKLL 438

Query:   296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
             E+V  +QT+P V      +GK++ K  +  G C GF  NR+   Y   A  ++  G   Y
Sbjct:   439 EVVIADQTAPDVAATGFALGKRLGKVSVRAGVCDGFIGNRILSVYRTCADHMILDGASPY 498

Query:   356 LIDRAITKFGMPMGPFRLADLVGFGVAIATGMQF-IENFPERTYKSMIIPIMQEDKRAGE 414
              ID A+ +FG  MGPF +ADL G  +  A   +   E    R   S     + E    G+
Sbjct:   499 QIDEALEEFGFAMGPFAVADLAGLDIGWAVRKRKRAEGLDPRARDSAYADKLCEAGHFGQ 558

Query:   415 TTRKGFYLYDERRKAS-PDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 473
              T KG+Y Y    KA  P+PEV   IE  R+  G+   P+    S+ +IV      +VNE
Sbjct:   559 KTGKGYYDYAAGAKARVPNPEVLPLIEAERAQQGIT--PR--AFSKDEIVRRYMAAMVNE 614

Query:   474 ACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
             A +V  EGIA +  D+D+  + G GFP YR
Sbjct:   615 AAKVVGEGIARRPLDVDVTLLYGYGFPRYR 644

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

UNIPROTKB|Q48GW3 fadB "Fatty acid oxidation complex subunit alpha" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 162/508 (31%), Positives = 265/508 (52%)

Query:     4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLY-KTDKIEPLGEA 62
             + K    E+A  +G VDAVVAP +L + A       +     + A    K DK++ L   
Sbjct:   170 SGKESSAEDALKVGAVDAVVAPEKLQAAALDLIQRAISGEFDYKAKRQPKLDKLK-LNAI 228

Query:    63 REIFKFARAQ---ARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCK 119
              ++  F  A+   A +  PN   P+  I  ++     G    L+ EA  F K+ ++   +
Sbjct:   229 EQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEIEAAGFVKMAKTSAAQ 288

Query:   120 SLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVN 179
             SL+ +F   +   K     D     + VK+ A+LG G+MG GIA    +   P+++K++ 
Sbjct:   289 SLIGLFLNDQELKKKAKGYDA--VAKDVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIR 346

Query:   180 EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS 239
             E+ ++ G+      L  R++KG++T  K  + ++ +   L Y  F +VD+V+EA++EN  
Sbjct:   347 EEAIQLGLNEASKLLGGRLEKGRLTAAKMAEALNAIRPTLSYGDFGNVDLVVEAVVENPK 406

Query:   240 LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVR 299
             +KQ + A++E     H ILASNTSTI ++L+ +     +  VG HFF+P H+MPL+E++R
Sbjct:   407 VKQAVLAEVEANVGEHTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIR 466

Query:   300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDR 359
               ++S + +   +   +K+ K PIVV +C GF VNR+ FPY      LV  G D   ID+
Sbjct:   467 GEKSSEEAVATTVAYARKMGKNPIVVNDCPGFLVNRVLFPYFGGFARLVSAGVDFVRIDK 526

Query:   360 AITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTR 417
              + KFG PMGP  L D+VG            E FP+R    +  ++  + E KR G+   
Sbjct:   527 VMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSVVDALYEAKRLGQKNG 586

Query:   418 KGFYLYDERRKASPDPEVKKFIEKA--RSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475
             KGFY Y+  +K  P    KK  + A    +  +  + +  ++S++DI+  +  P+  E  
Sbjct:   587 KGFYAYETDKKGKP----KKVNDPAVLDVLKPIVYEQR--EVSDEDIINWMMIPLCLETV 640

Query:   476 RVFAEGIAVKAADLDIASVMGMGFPPYR 503
             R   +GI   AA+ D+  + G+GFPP+R
Sbjct:   641 RCLEDGIVETAAEADMGLIYGIGFPPFR 668

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

TIGR_CMR|SO_0021 SO_0021 "fatty oxidation complex, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 176/513 (34%), Positives = 262/513 (51%)

Query:     4 TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG--- 60
             T    + E+A  +G VDAVVAP  L   A Q   D +  +  W A   +  K+ PL    
Sbjct:   169 TGNEQRAEDALKVGAVDAVVAPEALEVAAIQMLKDAVAEKLDWQARRQR--KLSPLTLPK 226

Query:    61 -EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
              EA   F  A+      A  +   P+  ++VVE     G    LQ E + F KL +++  
Sbjct:   227 LEAMMSFTTAKGMVFSVAGKHYPAPMAAVNVVEQAATKGRSDALQIEHQAFIKLAKTDVA 286

Query:   119 KSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
             K+L+ IF      +G +K  G     LA + V   A+LG G+MG GIA        P+++
Sbjct:   287 KALIGIFLNDQFVKGKAKKAGK----LA-KAVNSAAVLGAGIMGGGIAYQSASKGTPIVM 341

Query:   176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
             K++ +  L+ G+      L ++V +G+ T EK  K ++ +T  L+Y   K  D+V+EA++
Sbjct:   342 KDIAQPALDLGLNEAAKLLSAQVARGRSTPEKMAKVLNNITPALEYAPVKHADVVVEAVV 401

Query:   236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
             E+  +K Q+ A++E+Y     I+ASNTSTI ++L+ +     +R  G HFF+P H MPL+
Sbjct:   402 EHPKVKAQVLAEVEQYVSEDAIIASNTSTISISLLAKSMKKPERFCGMHFFNPVHKMPLV 461

Query:   296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
             E++R   +S + I  ++    K+ KTPIVV +C GF VNR+ FPY      L+  G D  
Sbjct:   462 EVIRGEHSSEETIASVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFNGLLAEGGDFA 521

Query:   356 LIDRAITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM--IIPIMQEDKRA 412
              ID+ + K FG PMGP  L D+VG            E FP+R  KS    I +M E+KR 
Sbjct:   522 AIDKVMEKQFGWPMGPAYLLDVVGLDTGHHAQAVMAEGFPDRMGKSGNDAIDVMFENKRL 581

Query:   413 GETTRKGFYLY--DERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPV 470
             G+   KGFY Y  D R K   D +   + E  ++  G   + K     E  I+     P+
Sbjct:   582 GQKNGKGFYAYSVDSRGKPKKDVDPTSY-ELLKAAFG---EQKAFDADE--IIARTMIPM 635

Query:   471 VNEACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
             + E  R   EGI    A+ D+  V G+GFPP+R
Sbjct:   636 IIETVRCLEEGIVASPAEADMGLVYGLGFPPFR 668

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

TIGR_CMR|SO_3088 SO_3088 "fatty oxidation complex, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 176/509 (34%), Positives = 264/509 (51%)

Query:     1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
             MMLT K ++ ++A  +GLV+ VV    L+ TA + AL   +  +P   +L     +E  G
Sbjct:   167 MMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKQIAKPVKKSLVN-QLLEGTG 225

Query:    61 EAREIF--KFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
               R I   + A+  A+K   N   P   ID V  G+  G + GL+ EA  F +L+ S+  
Sbjct:   226 FGRNIIFDQAAKQVAKKTQGNYPAPAKIIDCVRQGIAKGMQKGLEVEASHFAELVVSKES 285

Query:   119 KSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL-SNYPVILKE 177
             ++L  IFFA     K  G    G  PR+VKK  ILGGGLMG GIA+     +  P  +K+
Sbjct:   286 EALRSIFFATTEMKKETGAE--GATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKD 343

Query:   178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
             +NEK L   +      L   VK+  MT    +  ++L+T   +Y+  KD D+V+EA+ E+
Sbjct:   344 INEKGLSNALSYAYKLLDKGVKRRHMTPAARDNLMALMTTTTEYKGVKDADIVVEAVFED 403

Query:   238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
             ++LK Q+  D+E+ C  H I ASNTS++ +  I +     + ++G H+FSP   MPL+E+
Sbjct:   404 LALKHQMVKDIERECGEHTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEV 463

Query:   298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDLYL 356
             +   +TSP+ I   +   +K  KTPIVV +  GF VNR+   Y  +AA LL+E G  +  
Sbjct:   464 IAHAKTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLE-GQSVEH 522

Query:   357 IDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETT 416
             +D+A+ KFG P+GP  L D VG  V         +   ER         +  D R G   
Sbjct:   523 LDKALVKFGFPVGPITLLDEVGIDVGAKISPILEKELGERFKAPAAFDKLLSDDRKGRKN 582

Query:   417 RKGFYLYDERRKASPDPEVKKFI-EKARSMSGV--AIDPKFAKLSEKDIVEMIFFPVVNE 473
              KGFY Y    K       KK + E    + G+   +D + + ++E+ +V+M+     NE
Sbjct:   583 GKGFYQYGAASK-------KKAVDETVYGVLGIKPGVDKEMSAVAERCVVQML-----NE 630

Query:   474 ACRVFAEGIAVKAADLDIASVMGMGFPPY 502
             A R    GI     D DI ++ G+GFPP+
Sbjct:   631 AVRCLDAGIIASPRDGDIGAIFGIGFPPF 659

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0008692 "3-hydroxybutyryl-CoA epimerase activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

UNIPROTKB|P28793 fadB "Fatty acid oxidation complex subunit alpha" [Pseudomonas fragi (taxid:296)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 169/512 (33%), Positives = 261/512 (50%)

Query:     4 TSKPVKGEEAHSLGLVDAVVAPNQL-------VSTARQWALDILEHRRPWVATLYKTDKI 56
             + K  + E+A  +  VDAVV  ++L       +  A    LD    R+P +  L K + I
Sbjct:   170 SGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKL-KLNAI 228

Query:    57 EPLGEAREIFK-FARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS 115
             E +  A E  K F   QA    PN   P+  I  ++     G    L+ EA  F KL ++
Sbjct:   229 EQM-MAFETAKGFVAGQA---GPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKT 284

Query:   116 ETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
                  L+ +F   +   K   V D  +A + VK+ A+LG G+MG GIA        P+++
Sbjct:   285 SASNCLIGLFLNDQELKKKAKVYDK-IA-KDVKQAAVLGAGIMGGGIAYQSASKGTPILM 342

Query:   176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
             K++NE  +E G+      L  RV KG+MT  K  + ++ +   L Y  F +VD+V+EA++
Sbjct:   343 KDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVV 402

Query:   236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
             EN  +KQ + A++E +     ILASNTSTI ++L+ +     +  VG HFF+P H+MPL+
Sbjct:   403 ENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLV 462

Query:   296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
             E++R  ++S   +   +   KK+ K PIVV +C GF VNR+ FPY      LV  G D  
Sbjct:   463 EVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFV 522

Query:   356 LIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKRAG 413
              ID+ + KFG PMGP  L D+VG            E FP+R    +   I  + E KR G
Sbjct:   523 RIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLG 582

Query:   414 ETTRKGFYLYDERRKASPDPEVKKFIEKA--RSMSGVAIDPKFAKLSEKDIVEMIFFPVV 471
             +   KGFY Y+  +K       KK ++ +    +  +  + +   ++++DI+  +  P+ 
Sbjct:   583 QKNGKGFYAYEADKKGKQ----KKLVDSSVLEVLKPIVYEQR--DVTDEDIINWMMIPLC 636

Query:   472 NEACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
              E  R   +GI   AA+ D+  V G+GFP +R
Sbjct:   637 LETVRCLEDGIVETAAEADMGLVYGIGFPLFR 668

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49809	MFPA_BRANA	1, ., 1, ., 1, ., 3, 5	0.7852	0.9401	0.6937	N/A	no
Q39659	MFPA_CUCSA	1, ., 1, ., 1, ., 3, 5	0.7952	0.9401	0.6937	N/A	no
Q9ZPI5	MFP2_ARATH	1, ., 1, ., 1, ., 3, 5	0.8011	0.9401	0.6937	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.963
3rd Layer	5.1.2.3	0.946
3rd Layer	1.1.1.35	0.946
3rd Layer	5.1.2	0.963
3rd Layer	5.3.3.8	0.946
3rd Layer	4.2.1	0.963
4th Layer	4.2.1.17	0.946
3rd Layer	5.3.3	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_X3923	hypothetical protein (726 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_290034	acyl-CoA oxidase (EC-1.3.3.6) (664 aa)						•	•		0.908
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)						•	•		0.908
	estExt_Genewise1_v1.C_LG_VI1706	acyl-CoA oxidase (EC-1.3.3.6) (436 aa)						•	•		0.907
	grail3.0096010101	acyl-CoA oxidase (EC-1.3.3.6) (639 aa)						•	•		0.906
	fgenesh4_pg.C_LG_XIX000851	acyl-CoA oxidase (EC-1.3.3.6) (680 aa)						•	•		0.903
	estExt_fgenesh4_pm.C_LG_VII0199	acyl-CoA oxidase (EC-1.3.3.6) (689 aa)						•	•		0.903
	estExt_fgenesh4_pm.C_LG_V0077	acyl-CoA oxidase (EC-1.3.3.6) (691 aa)						•	•		0.902
	fgenesh4_pg.C_scaffold_3547000001	annotation not avaliable (326 aa)						•			0.899
	eugene3.07970004	Predicted protein (395 aa)	•					•	•		0.499
	fgenesh4_pg.C_scaffold_17829000001	Predicted protein (327 aa)	•					•	•		0.492

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	535
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-111
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	1e-110
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	6e-97
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	3e-93
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	4e-92
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	3e-82
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	2e-74
PRK05808	282	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge	4e-70
PLN02545	295	PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge	3e-61
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	1e-54
PRK06035	291	PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas	6e-52
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	7e-52
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	6e-51
PRK09260	288	PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge	2e-47
PRK07530	292	PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge	5e-47
PRK06130	311	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge	9e-43
PRK08293	287	PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge	4e-37
PRK08269	314	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge	2e-22
PRK06129	308	PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas	7e-21
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	1e-20
PRK07531	495	PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA	1e-13
PRK07066	321	PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge	7e-08
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	2e-07
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	3e-05
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	3e-04
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	3e-04
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	6e-04
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	9e-04
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	0.001
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	0.002
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	0.002
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	0.004

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  345 bits (888), Expect = e-111
 Identities = 184/529 (34%), Positives = 268/529 (50%), Gaps = 62/529 (11%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL-DILEHRR-PWVATLYKTDKIEP 58
           M+LT K ++ ++A  LGLVD VV  + L+  A + A       R  P    L + +   P
Sbjct: 167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGN---P 223

Query: 59  LGEAREIFKFARAQARKQAP-NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
           LG A  +FK AR +   +   N   P   +DVV  G+  G  +G + EA  F +L  +  
Sbjct: 224 LGRAL-LFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPE 282

Query: 118 CKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIA--TALILSNYPVIL 175
             +L  IFFA     K  G       PR V KV +LGGGLMG GIA  TA   +  PV +
Sbjct: 283 SAALRSIFFATTEMKKDTGS---DAKPRPVNKVGVLGGGLMGGGIAYVTA-TKAGLPVRI 338

Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
           K++N + +   +      L  +VK+  +   + +K ++L++G  DY  FK  D+VIEA+ 
Sbjct: 339 KDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVF 398

Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
           E+++LKQQ+ A++E+ C PH I ASNTS++ +  I       ++++G H+FSP   MPL+
Sbjct: 399 EDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLV 458

Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDL 354
           E++   +TS + I   + + KK  KTPIVV +  GF VNR+  PY  +AA LL+E G  +
Sbjct: 459 EVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLE-GEPI 517

Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQE------ 408
             ID A+ KFG P+GP  L D VG  V                  + IIPI++       
Sbjct: 518 EHIDAALVKFGFPVGPITLLDEVGIDVG-----------------TKIIPILEAALGERF 560

Query: 409 -----------DKRAGETTRKGFYLYDERRKAS---PDPEVKKFIEKARSMSGVAIDPKF 454
                      D R G    +GFYLY ++ K S    D  V   +          I P+ 
Sbjct: 561 SAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLL---------GITPQ- 610

Query: 455 AKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
           ++LS  +I E     ++NEA R   EGI   A D DI +V G+GFPP+ 
Sbjct: 611 SRLSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFL 659

Length = 708

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  344 bits (885), Expect = e-110
 Identities = 181/519 (34%), Positives = 271/519 (52%), Gaps = 34/519 (6%)

Query: 2   MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG- 60
           +   K V+ E+A  +G VDAVVAP +L   A       +  +  W A   +  K+EPL  
Sbjct: 167 IAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKA--RRQPKLEPLKL 224

Query: 61  ---EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
              EA   F  A+    ++A  +   P+  +  +EA    G    L+ EA+ F KL ++ 
Sbjct: 225 SKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTN 284

Query: 117 TCKSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPV 173
             ++LV IF      +G +K      L    + VK+ A+LG G+MG GIA        PV
Sbjct: 285 VARALVGIFLNDQYVKGKAK-----KLAKDAKPVKQAAVLGAGIMGGGIAYQSASKGVPV 339

Query: 174 ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEA 233
           I+K++N+K L+ G+      L  +V++GK+   K    +S +   LDY  F+ VD+V+EA
Sbjct: 340 IMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEA 399

Query: 234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP 293
           ++EN  +K  + A++E+      ILASNTSTI ++L+ +     +   G HFF+P H MP
Sbjct: 400 VVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMP 459

Query: 294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTD 353
           L+E++R  +TS + I  ++    K+ KTPIVV +C GF VNR+ FPY      L+  G D
Sbjct: 460 LVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGAD 519

Query: 354 LYLIDRAITK-FGMPMGPFRLADLVGFGVAIATG------MQFIENFPERTYKSM--IIP 404
              ID+ + K FG PMGP  L D+VG    I T       M   E FP+R  K     I 
Sbjct: 520 FRQIDKVMEKQFGWPMGPAYLLDVVG----IDTAHHAQAVMA--EGFPDRMKKDYRDAID 573

Query: 405 IMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVE 464
           ++ E KR G+   KGFY Y+E +K  P  EV         +    + PK  + S+++I+ 
Sbjct: 574 VLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVD---PAVYELLAPVVQPK-REFSDEEIIA 629

Query: 465 MIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
            +  P++NE  R   EGI    A+ D+A V G+GFPP+R
Sbjct: 630 RMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFR 668

Length = 715

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  309 bits (792), Expect = 6e-97
 Identities = 165/511 (32%), Positives = 264/511 (51%), Gaps = 22/511 (4%)

Query: 4   TSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG--- 60
           + K  + E+A  +G VDAVV  ++L + A Q   D +  +  W A   +  K+EPL    
Sbjct: 169 SGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAK--RQPKLEPLKLSK 226

Query: 61  -EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC 118
            EA   F  A+    + A P+   P+  +  +E     G    L+ EA+ F KL ++   
Sbjct: 227 IEAMMSFTTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEA 286

Query: 119 KSLVHIFFAQ---RGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
           K+L+ +F      +G +K           + VK+ A+LG G+MG GIA        P+++
Sbjct: 287 KALIGLFLNDQYVKGKAKK-----ADKIAKDVKQAAVLGAGIMGGGIAYQSASKGTPIVM 341

Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
           K++N+  L+ G+      L  +V++G++T  K    ++ +T  L Y  F +VD+V+EA++
Sbjct: 342 KDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV 401

Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
           EN  +K  + A++E++     ILASNTSTI ++L+ +     +   G HFF+P H MPL+
Sbjct: 402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLV 461

Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
           E++R  ++S + I  ++    K+ KTPIVV +C GF VNR+ FPY      L+  G D  
Sbjct: 462 EVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFV 521

Query: 356 LIDRAITK-FGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM--IIPIMQEDKRA 412
            ID+ + K FG PMGP  L D+VG            E FP+R  K     I  + E KR 
Sbjct: 522 RIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRL 581

Query: 413 GETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVN 472
           G+   KGFY Y+  +K  P   V   + +   +    +  +     +++I+  +  P++N
Sbjct: 582 GQKNGKGFYAYEADKKGKPKKLVDSSVLE---LLKPVVYEQRD-FDDEEIIARMMIPMIN 637

Query: 473 EACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
           E  R   EGI   AA+ D+  V G+GFPP+R
Sbjct: 638 ETVRCLEEGIVATAAEADMGLVYGLGFPPFR 668

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score =  286 bits (735), Expect = 3e-93
 Identities = 107/284 (37%), Positives = 168/284 (59%), Gaps = 4/284 (1%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           +KKVA++G G+MG+GIA    L+ Y V+LK+++ + LE  +  +  NL+  V+KGK+T+E
Sbjct: 3   IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE 62

Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
           + +  ++ +T   D  + KD D+VIEA++E++ LK+Q+FA+LE    P  ILASNTS++ 
Sbjct: 63  EADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122

Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
           +  + E     +R +G HFF+P  +MPL+E++R  +TS + +  +++  KKI KTP+VV 
Sbjct: 123 ITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVK 182

Query: 327 NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIA 384
           +  GF VNR+       A  L+E G      ID A+    G+PMGPF LADL+G  V + 
Sbjct: 183 DVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVMLH 242

Query: 385 TGMQFIENFPERTYKSM--IIPIMQEDKRAGETTRKGFYLYDER 426
                 E   +  Y     ++  + E  R G  + KGFY Y   
Sbjct: 243 IMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRGE 286

Length = 307

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  295 bits (758), Expect = 4e-92
 Identities = 176/507 (34%), Positives = 250/507 (49%), Gaps = 22/507 (4%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP--WVATLYKTDKIEP 58
           M+LT K ++ ++A  LGLVD VV  + L+ TA + AL     R+P      L +     P
Sbjct: 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGT---P 218

Query: 59  LGEAREIFKFARAQ-ARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
           LG A  +F  A  + A+K   N       +DVV  G+  G + GL  EA  F +L+ +  
Sbjct: 219 LGRAL-LFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPE 277

Query: 118 CKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL-SNYPVILK 176
             +L  IFFA     K  G       P ++KKV ILGGGLMG GIA+     +  PV +K
Sbjct: 278 SAALRSIFFATTEMKKETGSDAT---PAKIKKVGILGGGLMGGGIASVTATKAGIPVRIK 334

Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236
           ++N + +   +      L   VK+  MT  + +  ++L+TG  DY  FKDVD+VIEA+ E
Sbjct: 335 DINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE 394

Query: 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE 296
           +++LK Q+  D+E+ C  H I ASNTS++ +  I       + ++G H+FSP   MPL+E
Sbjct: 395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVE 454

Query: 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYL 356
           ++    TS Q I   + + KK  KTPIVV +  GF VNR+  PY   A  L+  G  +  
Sbjct: 455 VIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEH 514

Query: 357 IDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETT 416
           ID+A+ KFG P+GP  L D VG  V             ER     +   +  D R G   
Sbjct: 515 IDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGERFKAPAVFDKLLSDDRKGRKN 574

Query: 417 RKGFYLYDERRKASP-DPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC 475
            KGFYLY    K    D  V   +          I P         + E     ++NEA 
Sbjct: 575 GKGFYLYGAATKKKAVDESVYGLL---------GIKPG-VDKEASAVAERCVMLMLNEAV 624

Query: 476 RVFAEGIAVKAADLDIASVMGMGFPPY 502
           R   EG+     D DI ++ G+GFPP+
Sbjct: 625 RCLDEGVIRSPRDGDIGAIFGIGFPPF 651

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  270 bits (693), Expect = 3e-82
 Identities = 167/534 (31%), Positives = 257/534 (48%), Gaps = 40/534 (7%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPL 59
           MMLT K ++ + A  +G+VD +V P    +  A +  ++ LE      A      K+   
Sbjct: 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSIN 233

Query: 60  GEA-----------------REIFKFARAQARKQAPNL-THPIVCIDVVEAGVVSGPRAG 101
            +                  ++++K A  +  KQ   L   P+  +DVV  G   GP AG
Sbjct: 234 RDKGLVHKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAG 293

Query: 102 LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSG 161
            + E++ F +L  +   K+L+ +F  Q    K       G   R VK +A+LG GLMG+G
Sbjct: 294 YEAESKAFGELSMTFESKALIGLFHGQTDCKK----NKFGKPQRPVKTLAVLGAGLMGAG 349

Query: 162 IATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY 221
           IA   +      +LK+     L+ G  +V   L  +VK+ K+T  + +  +S LT  LDY
Sbjct: 350 IAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409

Query: 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIV 281
             FK+ DMVIEA+ E++SLK ++  ++E   PPHCI+ASNTS + +  I   +   ++++
Sbjct: 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVI 469

Query: 282 GAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYT 341
           G H+FSP   M LLEI+  + TS   +   + +G K  K  IVV +  GF   R   P  
Sbjct: 470 GMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPML 529

Query: 342 QAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSM 401
                L++ G D   +D+  TKFG P+G   LAD VG  VA        + F ER +   
Sbjct: 530 AEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDVAEHVAEDLGKAFGER-FGGG 588

Query: 402 IIPIMQEDKRAGETTR---KGFYLYDERRKASPD--PEVKKFIEKARSMSGVAIDPKFAK 456
              ++ E  +AG   R   KG ++Y E +K S     +  + + + +      + PK   
Sbjct: 589 SAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYK------LPPKAEV 642

Query: 457 LSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP-----PYRFV 505
            S +DI   +    VNEA     EGI    ++ DI +V G+GFP     P+RFV
Sbjct: 643 SSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFV 696

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score =  233 bits (597), Expect = 2e-74
 Identities = 69/180 (38%), Positives = 115/180 (63%)

Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
           KVA++G G MG+GIA     +   V+L +++E+ LE    R+  +L   V+KG++T+E  
Sbjct: 1   KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60

Query: 209 EKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268
           +  ++ ++   D     D D+VIEA+ EN+ LK+++FA+L+   PP  ILASNTS++ + 
Sbjct: 61  DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120

Query: 269 LIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328
            +   T   +R +G HFF+P  +MPL+E+VR  +TSP+ +  ++ + KKI KTP+VV + 
Sbjct: 121 ELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKDV 180

This family also includes lambda crystallin. Length = 180

>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  225 bits (577), Expect = 4e-70
 Identities = 103/283 (36%), Positives = 160/283 (56%), Gaps = 9/283 (3%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           ++K+ ++G G MG+GIA    ++ Y V++ ++++  ++ G+  +  +L   VKKGKMT+ 
Sbjct: 3   IQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEA 62

Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
             E  ++ +TG  D +  KD D+VIEA  EN+ LK++IFA L++   P  ILA+NTS++ 
Sbjct: 63  DKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLS 122

Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
           +  +   T   D+++G HFF+P  VM L+EI+R   TS      +  + KKI KTP+ V 
Sbjct: 123 ITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVK 182

Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGVAI 383
           N  GF VNR+  P   +A F+L E       ID  + K G   P+GP  LADL+G    +
Sbjct: 183 NAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGM-KLGCNHPIGPLALADLIGLDTCL 241

Query: 384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
           A      E F +  Y+    P++++   AG   RK   GFY Y
Sbjct: 242 AIMEVLYEGFGDSKYRPC--PLLRKMVAAGWLGRKTGRGFYDY 282

Length = 282

>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase

 Score =  203 bits (517), Expect = 3e-61
 Identities = 96/296 (32%), Positives = 153/296 (51%), Gaps = 15/296 (5%)

Query: 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT 204
             +KKV ++G G MGSGIA     +   V L + +   L  G+  + ++L   VKKGKM+
Sbjct: 2   AEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMS 61

Query: 205 QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
           QE+ + T+  +    + E  +D D +IEAI+E+  LK+++F++L++ C P  ILASNTS+
Sbjct: 62  QEEADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSS 121

Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
           I +  +   T    +++G HF +P  +M L+EI+R   TS +V      + ++  KT + 
Sbjct: 122 ISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVC 181

Query: 325 VGNCTGFAVNRMFFPYTQAAFLLVERGT----DLYLIDRAITKFG--MPMGPFRLADLVG 378
             +  GF VNR+  P    AF  +  G     D   ID  + K G   PMGP  LAD +G
Sbjct: 182 SQDYPGFIVNRILMPMINEAFYALYTGVASKED---IDTGM-KLGTNHPMGPLHLADFIG 237

Query: 379 FGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRKASP 431
               ++      E   +  Y+    P++ +   AG   RK   G Y YD +++  P
Sbjct: 238 LDTCLSIMKVLHEGLGDSKYR--PCPLLVQYVDAGRLGRKSGRGVYHYDGKKRGDP 291

Length = 295

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  185 bits (472), Expect = 1e-54
 Identities = 98/289 (33%), Positives = 153/289 (52%), Gaps = 19/289 (6%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           +++V ++G G MG+GIA     +   V++ E  E+   AG  R+  +L+  V +GK+T+ 
Sbjct: 5   IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTER 64

Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCP-PHCILASNTSTI 265
           + +  ++ L    D   F D  +VIEA++E+ ++K +IFA+L+K    P  +LASNTS+I
Sbjct: 65  ERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSI 124

Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLD-IGKKIKKTPIV 324
            +  +   T    R++G HFF+P  V+PL+E+V T  TS   +    +     + K  + 
Sbjct: 125 PIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVR 184

Query: 325 VGNCTGFAVNRMFFPYTQAAFLLVERG----TDLYLIDRAITK-FGMPMGPFRLADLVGF 379
             + +GF VN +  PY  +A  +VE G     D   ID+A+      PMGP RL+DLVG 
Sbjct: 185 AQDRSGFVVNALLVPYLLSAIRMVESGFATAED---IDKAMVLGCAHPMGPLRLSDLVGL 241

Query: 380 GV--AIATGMQFIENFPERTYKSMIIPI---MQEDKRAGETTRKGFYLY 423
               AIA  M   E F E  Y     P+   M E    G+ + +GFY Y
Sbjct: 242 DTVKAIADSM--YEEFKEPLYAPP--PLLLRMVEAGLLGKKSGRGFYTY 286

Length = 286

>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  178 bits (453), Expect = 6e-52
 Identities = 94/291 (32%), Positives = 152/291 (52%), Gaps = 17/291 (5%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV---RANLQSRVKKGKM 203
           +K + ++G G+MG GIA     + Y V + +V+E+ L+  +  +      L++ V+KGKM
Sbjct: 3   IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62

Query: 204 TQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263
           ++++ +  ++ +     YES  D D ++EA+ E + LK+++FA+LE+   P  I+ASNTS
Sbjct: 63  SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122

Query: 264 TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI 323
            I +  I      KDR +G H+F+PA VM L+E+VR   TS +     +++ KKI K PI
Sbjct: 123 GIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPI 182

Query: 324 VVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITK--FGMPMGPFRLADLVGFGV 381
            V +  GF   R    +   A    E G         + K  FG PMGPF L D++G   
Sbjct: 183 EVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGIDT 242

Query: 382 A--IATGM-------QFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
              IA  +       QFI   P  + K M++     DK+    ++ G++ Y
Sbjct: 243 VYHIAEYLYEETGDPQFI---PPNSLKQMVLNGYVGDKKVKYGSKGGWFDY 290

Length = 291

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score =  184 bits (469), Expect = 7e-52
 Identities = 98/299 (32%), Positives = 150/299 (50%), Gaps = 7/299 (2%)

Query: 143 APRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK 202
           A   +  VA++G G MG+GIA     + + V+L +       A    + A L   V+KGK
Sbjct: 3   ALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGK 62

Query: 203 MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262
           +T E+ +  ++ L  V       D D+V+EAI+E + +KQ +FA LE    P CILA+NT
Sbjct: 63  LTAEQADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNT 122

Query: 263 STIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322
           S++ +  I       +R+ G HFF+P  +M L+E+V    T P V   L  + +   KTP
Sbjct: 123 SSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTP 182

Query: 323 IVVGNCTGFAVNRMFFP-YTQAAFLLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFG 380
           +   +  GF VNR   P YT+A  +L E   D   ID  + +  G  MGPF L DL+G  
Sbjct: 183 VRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLD 242

Query: 381 VAIATGMQFIEN--FPERTYK-SMIIPIMQEDKRAGETTRKGFYLY-DERRKASPDPEV 435
           V  A  M+ +    + E  ++ S+I   +    R G  + +GFY Y D  ++   +   
Sbjct: 243 VNHAV-MESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAP 300

Length = 507

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score =  181 bits (461), Expect = 6e-51
 Identities = 112/327 (34%), Positives = 163/327 (49%), Gaps = 11/327 (3%)

Query: 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ 205
            V  VA++G G MG+GIA     + + V+L ++  + L   I  + A L S V KGK+T 
Sbjct: 4   NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTA 63

Query: 206 EKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265
           E+ E+T+  L  V D  +  D  +VIEAI+EN+ +K+ +FA LE+ CP   I+ASNTS++
Sbjct: 64  EECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSL 123

Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
            +  I       +R+ G HFF+PA VM L+E+V    T+ +V   L +      K P+  
Sbjct: 124 SITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHC 183

Query: 326 GNCTGFAVNRMFFP-YTQAAFLLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFGVAI 383
            +  GF VNR+  P Y +A   L E+     ++D A+    G PMGPF L DL+G  V  
Sbjct: 184 HSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNF 243

Query: 384 A-TGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY-DERRKASPDPEVKKF 438
           A T   F   + +R +      + QE   AG   RK   G Y Y +E     P   V   
Sbjct: 244 AVTCSVFNAFWQDRRFLPS--LVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDS 301

Query: 439 IEKARSMSGV--AIDPKFAKLSEKDIV 463
                ++ G   A  P  A+L    I 
Sbjct: 302 FSPRVTVVGDIGAAAPLLARLEAAGIK 328

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  166 bits (422), Expect = 2e-47
 Identities = 82/286 (28%), Positives = 145/286 (50%), Gaps = 9/286 (3%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           ++K+ ++G G+MG GIA    +S +   L ++ ++ LE+    + +  +  V +GK+T+ 
Sbjct: 1   IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60

Query: 207 KFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI 265
             +  ++ L+  LD   +  D D+VIEA+ E + LK+ +F   + + P  C +A+NTST+
Sbjct: 61  ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120

Query: 266 DLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
               I   T   +R++  HFF+P H M L+E++R  +TS + +    ++ +++ K  +VV
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180

Query: 326 GNCTGFAVNRMFFPYTQAAFLLVERGT----DLYLIDRAIT-KFGMPMGPFRLADLVGFG 380
               GF  +R+       AF +++ G     D   ID+AI      PMGP  L DLVG  
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAED---IDKAIRLGLNFPMGPLELGDLVGLD 237

Query: 381 VAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDER 426
             +       E   E+   + ++    +  R G  T +G Y Y  R
Sbjct: 238 TRLNNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNR 283

Length = 288

>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  165 bits (419), Expect = 5e-47
 Identities = 97/284 (34%), Positives = 149/284 (52%), Gaps = 11/284 (3%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           +KKV ++G G MG+GIA    L+ Y V+L +V+   LEAG+  +  NL  +V KGK+++E
Sbjct: 4   IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63

Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
                ++ ++   D E   D D+VIEA  E+ ++K++IFA L     P  ILA+NTS+I 
Sbjct: 64  ARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS 123

Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
           +  +   T   +R +G HF +P  VM L+E++R   T         +   K+ KT  V  
Sbjct: 124 ITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAE 183

Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGVAI 383
           +   F VNR+  P   +A + L E    +  ID A+ K G   PMGP  LAD +G    +
Sbjct: 184 DFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAM-KLGANHPMGPLELADFIGLDTCL 242

Query: 384 ATGMQFI-ENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
           +  MQ + +   +  Y+    P++ +   AG   RK   GFY Y
Sbjct: 243 SI-MQVLHDGLADSKYRP--CPLLVKYVEAGWLGRKTGRGFYDY 283

Length = 292

>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  154 bits (391), Expect = 9e-43
 Identities = 98/320 (30%), Positives = 159/320 (49%), Gaps = 36/320 (11%)

Query: 146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSR--VKKGKM 203
            ++ +AI+G G MGSGIA         V+L +V E  LE    R R  ++    V     
Sbjct: 3   PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALE----RARGVIERALGVYAPLG 58

Query: 204 TQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263
                   I +  G+    +    D+VIEA+ E + LK+ +FA L+  C P  I A+NTS
Sbjct: 59  IASAGMGRIRMEAGLAA--AVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTS 116

Query: 264 TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI 323
            + +  I +     +R VG HFF+PA V+PL+E+VR ++TSPQ +   + + + I K P+
Sbjct: 117 GLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPV 176

Query: 324 VVG-NCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAITKFGMPM-----GPFRLADL 376
           +V  +  GF  NR+     + A  L+E+G      ID  + K+ + +     GP    D+
Sbjct: 177 LVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVV-KWSLGIRLALTGPLEQRDM 235

Query: 377 VGFGV--AIATGM-QFIENFPERTYKSMIIPIMQEDKRAGE---TTRKGFYLYD-ERRKA 429
            G  V  A+A+ + Q +EN      ++   P+++E   AGE    + +GFY +  ERR+ 
Sbjct: 236 NGLDVHLAVASYLYQDLEN------RTTPSPLLEEKVEAGELGAKSGQGFYAWPPERRE- 288

Query: 430 SPDPEVKKFIEKARSMSGVA 449
               EV    +K+ ++  V 
Sbjct: 289 ----EVLA--DKSAALVEVR 302

Length = 311

>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  138 bits (350), Expect = 4e-37
 Identities = 79/288 (27%), Positives = 130/288 (45%), Gaps = 15/288 (5%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           +K V + G G++GS IA       + V + +++++ LE    R+       V+  + T+E
Sbjct: 3   IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62

Query: 207 KF-EKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
              E  ++ +T   D  E+ KD D+VIEA+ E+  +K   + +L K  P   I A+N+ST
Sbjct: 63  APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122

Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
           +  +   E T   ++ +  HF +        EI+    T P+V   ++   K I   PIV
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182

Query: 325 VGN-CTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAITK-FGMPMGPFRLADLVGFGV 381
           +     G+ +N +  P+  AA  L  +G  D   ID+      G PMGPF + D+VG   
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVG--- 239

Query: 382 AIATGMQFIENFPERTYKSMIIPI------MQEDKRAGETTRKGFYLY 423
            + T      N+ E T                +  + G  T +GFY Y
Sbjct: 240 -LDTAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNY 286

Length = 287

>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 40/297 (13%)

Query: 158 MGSGIATALILSNYPVILKEVN-------EKFLEAGIGRVRANLQSRVKKGKMTQEKFEK 210
           MG GIA A   + + V L +                   +   L + V  G++   + + 
Sbjct: 1   MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA 60

Query: 211 T---ISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267
               I+++      ++  D D+V EA+ E +  K++    L ++     I+AS TST  +
Sbjct: 61  VLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLV 120

Query: 268 NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN 327
             +       +R + AH+ +PA++MPL+E+  ++ T P V+  L  + ++I K P+V G 
Sbjct: 121 TDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGP 180

Query: 328 CTGFAVNRMFFPYTQA-----AFLLVERG-TDLYLIDRAI-TKFGMPMGPFRLADLVGFG 380
             G+ V R+     QA     A  +VE G      ID+AI T FG+      L + + +G
Sbjct: 181 SPGYIVPRI-----QALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWG 235

Query: 381 -----------VAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDER 426
                      +A   G       P+R     I+    E+ R G  T  GFY Y   
Sbjct: 236 GCDILYYASRYLAGEIG-------PDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAGV 285

Length = 314

>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score = 92.8 bits (231), Expect = 7e-21
 Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 15/239 (6%)

Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
            VAI+G GL+G   A     + + V L + +     A    +   L+       +  E  
Sbjct: 4   SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAP 63

Query: 209 EKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267
           +  ++ +       ++  D D V E+  EN+ LK+ +FA+L+   PPH ILAS+TS +  
Sbjct: 64  DAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLA 123

Query: 268 NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG- 326
           +   E    ++R + AH  +P +++P++E+V    T+P  +     + +   ++P+ +  
Sbjct: 124 SAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRR 183

Query: 327 NCTGFAVNRMFFPYTQAAFLLVERG----TDLYLIDRAITKFGMP-----MGPFRLADL 376
              GF +NR+     + AF LV  G     D   ID  I + G+      MGPF   DL
Sbjct: 184 EIDGFVLNRLQGALLREAFRLVADGVASVDD---IDAVI-RDGLGLRWSFMGPFETIDL 238

Length = 308

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score = 86.5 bits (215), Expect = 1e-20
 Identities = 40/97 (41%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITK-FGMPMGPFRLADLVGFGVAIATGM 387
           GF VNR+  P    A  LVE G      ID A+    G+PMGPF L+DLVG  V      
Sbjct: 1   GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60

Query: 388 QFIENFPERTYK-SMIIPIMQEDKRAGETTRKGFYLY 423
              E F +R Y+ S ++  + E  R G  T KGFY Y
Sbjct: 61  VLAEEFGDRAYRPSPLLEKLVEAGRLGRKTGKGFYKY 97

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 7/182 (3%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG--IGRVRANLQSRVKKGKMT 204
           + K A +GGG++G G A   +L+   V    V +   EA   IG V AN  +      +T
Sbjct: 4   IMKAACIGGGVIGGGWAARFLLAGIDV---AVFDPHPEAERIIGEVLAN--AERAYAMLT 58

Query: 205 QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
                    L       E+    D + E++ E + LK+++ A+++    P  ++ S+TS 
Sbjct: 59  DAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSG 118

Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
              + + E     +R+  AH ++P +++PL+E+V   +TSP+ I    +I ++I   P+ 
Sbjct: 119 FLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVH 178

Query: 325 VG 326
           + 
Sbjct: 179 IA 180

Length = 495

>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 21/244 (8%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVIL---KEVNEKFLEAGIGRVRANLQSRVKKGKM 203
           +K  A +G G++GSG     +     V+        E  L A +      L+ +      
Sbjct: 7   IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGA 66

Query: 204 TQEK--FEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN 261
           +  +  F  TI             D D + E+  E  +LK ++   + +   P  I+AS+
Sbjct: 67  SPARLRFVATIE--------ACVADADFIQESAPEREALKLELHERISRAAKPDAIIASS 118

Query: 262 TSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT 321
           TS +       R    +R V  H F+P +++PL+E++   +T+P+ +   + I + +   
Sbjct: 119 TSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMR 178

Query: 322 PI-VVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY-LIDRAITKFGMP-----MGPFRLA 374
           P+ V     GF  +R+     + A  LV  G      ID AI +FG       MG F   
Sbjct: 179 PLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAI-RFGAGIRWSFMGTFLTY 237

Query: 375 DLVG 378
            L G
Sbjct: 238 TLAG 241

Length = 321

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           ++LT + +  EEA  LGLVD VV   +L++ A + A  +
Sbjct: 157 LLLTGRRISAEEALELGLVDEVVPDEELLAAALELARRL 195

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILE 41
           M+LT + V   E   LG V+ VV   +L++ A +WA DIL 
Sbjct: 158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILA 198

Length = 259

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILE 41
           ++LT +P+   EA  LGLVD VV    +L+  A + A  +  
Sbjct: 162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA 203

Length = 257

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---LYKTDKIE 57
           MMLTS+P+ G EA   GLV+ V     L+  A++ A  I             L +T K  
Sbjct: 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSS 217

Query: 58  PLGEA--REIFKFARA 71
              E   RE   F   
Sbjct: 218 SYYEGVKREAKIFGEV 233

Length = 257

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LT + ++ +EA  +GLVD VV   QLV  A + A  + +     +A L        + 
Sbjct: 154 MLLTGRRIRAQEALKMGLVDKVVPEEQLVEEAIELAQRLADKPPLALAAL-----KAAMR 208

Query: 61  EA-REIFKFARAQARKQAPNLTHPIVCIDVVEA 92
            A  +     RAQA +  P    P    DV E 
Sbjct: 209 AALEDALPEVRAQALRLYPA---PFSTDDVKEG 238

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP 500
           +V  +  P++NEA R+  EG+A    D+D A  +G+G P
Sbjct: 3   VVNRLLAPLLNEAIRLVEEGVA-TPEDIDAAMRLGLGLP 40

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
           M+L  +P+  EEA  +GLV+ VV   +L + A   A  +      
Sbjct: 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPAS 204

Length = 259

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           ++LT +PV  +EA ++GL + VV   Q  + A + A ++
Sbjct: 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAEL 195

Length = 254

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 3   LTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE----P 58
           LT+ P+  E A   GLV+ VV  ++L+  AR+ A  I+++ +  V   YK+   +     
Sbjct: 165 LTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMV-LRYKSVINDGLKLD 223

Query: 59  LGEAREIFK 67
           LG A ++ K
Sbjct: 224 LGHALQLEK 232

Length = 265

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATL 50
           M LT   +   +A   GLV  VV  ++L+  AR+ A  I  +    V  L
Sbjct: 158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRAL 207

Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	535
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	100.0
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	100.0
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	100.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	100.0
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	100.0
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	100.0
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.95
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.92
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.89
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.77
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.71
PRK07417	279	arogenate dehydrogenase; Reviewed	99.7
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.67
PLN02688	266	pyrroline-5-carboxylate reductase	99.64
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.64
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.63
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.61
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.6
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.59
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.57
PRK06545	359	prephenate dehydrogenase; Validated	99.55
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.54
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.54
PRK08507	275	prephenate dehydrogenase; Validated	99.53
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.52
PRK08655	437	prephenate dehydrogenase; Provisional	99.51
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.5
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.5
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.49
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.47
PLN02256	304	arogenate dehydrogenase	99.47
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.46
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.46
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.45
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.45
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.45
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.44
PLN02858	1378	fructose-bisphosphate aldolase	99.42
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.42
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.41
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.4
PRK07680	273	late competence protein ComER; Validated	99.39
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.39
PLN02858	1378	fructose-bisphosphate aldolase	99.39
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.38
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	99.37
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.36
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.35
PRK08818	370	prephenate dehydrogenase; Provisional	99.35
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.34
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.34
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	99.34
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.34
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.34
PLN02600	251	enoyl-CoA hydratase	99.34
PRK08150	255	enoyl-CoA hydratase; Provisional	99.33
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.33
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.33
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.33
PRK12478	298	enoyl-CoA hydratase; Provisional	99.31
PRK05862	257	enoyl-CoA hydratase; Provisional	99.31
PLN02888	265	enoyl-CoA hydratase	99.3
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	99.3
PRK07658	257	enoyl-CoA hydratase; Provisional	99.29
PRK05980	260	enoyl-CoA hydratase; Provisional	99.29
PRK08139	266	enoyl-CoA hydratase; Validated	99.29
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.29
PRK08258	277	enoyl-CoA hydratase; Provisional	99.29
PRK08138	261	enoyl-CoA hydratase; Provisional	99.29
PRK07938	249	enoyl-CoA hydratase; Provisional	99.28
PRK07799	263	enoyl-CoA hydratase; Provisional	99.27
PRK08140	262	enoyl-CoA hydratase; Provisional	99.26
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	99.26
PRK06495	257	enoyl-CoA hydratase; Provisional	99.26
PRK09076	258	enoyl-CoA hydratase; Provisional	99.26
PRK08252	254	enoyl-CoA hydratase; Provisional	99.26
PRK06127	269	enoyl-CoA hydratase; Provisional	99.26
PRK06563	255	enoyl-CoA hydratase; Provisional	99.25
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	99.25
PRK06143	256	enoyl-CoA hydratase; Provisional	99.25
PRK07468	262	enoyl-CoA hydratase; Provisional	99.25
PRK05981	266	enoyl-CoA hydratase; Provisional	99.24
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.24
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.24
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.24
PRK09245	266	enoyl-CoA hydratase; Provisional	99.24
PRK05995	262	enoyl-CoA hydratase; Provisional	99.24
PRK07657	260	enoyl-CoA hydratase; Provisional	99.24
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.23
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	99.23
PRK06494	259	enoyl-CoA hydratase; Provisional	99.23
PRK06210	272	enoyl-CoA hydratase; Provisional	99.22
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	99.22
PRK06142	272	enoyl-CoA hydratase; Provisional	99.22
PRK07511	260	enoyl-CoA hydratase; Provisional	99.22
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.21
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.21
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.21
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.2
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.2
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	99.19
PLN02712	667	arogenate dehydrogenase	99.19
PRK06688	259	enoyl-CoA hydratase; Provisional	99.19
PRK07659	260	enoyl-CoA hydratase; Provisional	99.19
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.17
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.17
PRK08259	254	enoyl-CoA hydratase; Provisional	99.16
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	99.16
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	99.16
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	99.16
PRK07260	255	enoyl-CoA hydratase; Provisional	99.16
PTZ00082	321	L-lactate dehydrogenase; Provisional	99.15
PRK05864	276	enoyl-CoA hydratase; Provisional	99.15
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	99.14
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	99.13
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.13
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.13
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.13
PLN02921	327	naphthoate synthase	99.13
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.12
PLN02712	667	arogenate dehydrogenase	99.11
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	99.1
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	99.1
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.09
PRK08321	302	naphthoate synthase; Validated	99.09
PRK06144	262	enoyl-CoA hydratase; Provisional	99.08
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.08
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.08
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.08
PTZ00117	319	malate dehydrogenase; Provisional	99.07
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.06
PRK08260	296	enoyl-CoA hydratase; Provisional	99.06
PRK06223	307	malate dehydrogenase; Reviewed	99.06
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.05
PRK06023	251	enoyl-CoA hydratase; Provisional	99.05
PRK06072	248	enoyl-CoA hydratase; Provisional	99.04
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.03
PRK07509	262	enoyl-CoA hydratase; Provisional	99.02
PRK05870	249	enoyl-CoA hydratase; Provisional	99.02
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.02
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	99.02
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	99.01
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.01
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.0
PRK07327	268	enoyl-CoA hydratase; Provisional	99.0
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.0
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.99
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.97
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	98.97
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	98.97
PRK07827	260	enoyl-CoA hydratase; Provisional	98.96
PRK07854	243	enoyl-CoA hydratase; Provisional	98.95
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.94
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.92
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	98.88
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.88
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	98.84
PRK06190	258	enoyl-CoA hydratase; Provisional	98.84
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	98.84
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.83
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.83
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.82
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.82
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	98.8
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.79
PRK06444	197	prephenate dehydrogenase; Provisional	98.78
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.78
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.78
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.75
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.72
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.72
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.68
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	98.68
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.64
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	98.59
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.58
PRK12480	330	D-lactate dehydrogenase; Provisional	98.54
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	98.53
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.52
PRK08290	288	enoyl-CoA hydratase; Provisional	98.51
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.42
PRK06213	229	enoyl-CoA hydratase; Provisional	98.42
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	98.41
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.41
PRK08788	287	enoyl-CoA hydratase; Validated	98.41
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.4
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	98.35
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.35
PLN02602	350	lactate dehydrogenase	98.32
PRK08272	302	enoyl-CoA hydratase; Provisional	98.31
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.31
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.3
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.29
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.27
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.24
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	98.24
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.23
PRK13243	333	glyoxylate reductase; Reviewed	98.22
PRK15076	431	alpha-galactosidase; Provisional	98.21
PRK07574	385	formate dehydrogenase; Provisional	98.21
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	98.2
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	98.2
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.18
PLN03139	386	formate dehydrogenase; Provisional	98.17
PRK06436	303	glycerate dehydrogenase; Provisional	98.17
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.16
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	98.14
PRK08605	332	D-lactate dehydrogenase; Validated	98.12
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	98.11
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.11
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.08
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.04
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.02
PRK05869	222	enoyl-CoA hydratase; Validated	98.02
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.97
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.95
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.95
PRK05442	326	malate dehydrogenase; Provisional	97.89
PLN02928	347	oxidoreductase family protein	97.89
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.87
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.85
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.84
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	97.83
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.82
PRK05225	487	ketol-acid reductoisomerase; Validated	97.81
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.8
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	97.79
KOG1495	332	consensus Lactate dehydrogenase [Energy production	97.77
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.76
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.76
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.75
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.74
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.72
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.69
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.68
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.67
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.66
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.65
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.65
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.64
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	97.63
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	97.63
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.62
PLN00106	323	malate dehydrogenase	97.62
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.59
PTZ00325	321	malate dehydrogenase; Provisional	97.57
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	97.56
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.55
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.54
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.52
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.52
PRK06487	317	glycerate dehydrogenase; Provisional	97.51
PRK06932	314	glycerate dehydrogenase; Provisional	97.51
PRK06141	314	ornithine cyclodeaminase; Validated	97.5
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.44
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.39
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.38
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	97.36
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.35
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.34
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.32
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	97.31
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	97.29
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.29
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.28
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.28
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	97.27
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.27
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.26
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.25
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.24
PLN02306	386	hydroxypyruvate reductase	97.22
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.22
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.21
PRK04148	134	hypothetical protein; Provisional	97.19
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.16
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	97.15
PRK05086	312	malate dehydrogenase; Provisional	97.15
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.15
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.12
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.1
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.1
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	97.09
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	97.07
PRK07340	304	ornithine cyclodeaminase; Validated	97.06
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	97.05
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.04
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.03
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.03
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.01
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.98
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.94
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.92
PRK08618	325	ornithine cyclodeaminase; Validated	96.91
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.91
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.9
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.9
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.89
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.89
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.86
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.83
PLN00203	519	glutamyl-tRNA reductase	96.83
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	96.83
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.8
PLN02494	477	adenosylhomocysteinase	96.78
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.74
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.71
PRK08291	330	ectoine utilization protein EutC; Validated	96.69
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	96.68
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.68
PRK06046	326	alanine dehydrogenase; Validated	96.67
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	96.65
COG2910	211	Putative NADH-flavin reductase [General function p	96.65
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.64
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.63
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.62
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.52
PRK06823	315	ornithine cyclodeaminase; Validated	96.46
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.39
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.36
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.36
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.35
PRK06407	301	ornithine cyclodeaminase; Provisional	96.34
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.3
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.29
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.29
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.24
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.23
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.22
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.21
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.2
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.2
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.19
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.18
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.17
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.15
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.13
PRK07589	346	ornithine cyclodeaminase; Validated	96.09
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	96.04
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.04
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.04
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.03
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.0
PRK10669	558	putative cation:proton antiport protein; Provision	95.99
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.98
PRK09496	453	trkA potassium transporter peripheral membrane com	95.93
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.92
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.91
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.77
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.76
COG0300	265	DltE Short-chain dehydrogenases of various substra	95.73
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.71
PRK06153	393	hypothetical protein; Provisional	95.66
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.64
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	95.62
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	95.6
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.58
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.49
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.45
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.45
PRK06199	379	ornithine cyclodeaminase; Validated	95.41
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	95.41
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.4
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.4
PRK09496	453	trkA potassium transporter peripheral membrane com	95.36
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.24
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.23
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.22
PRK06270	341	homoserine dehydrogenase; Provisional	95.17
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.16
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.15
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.15
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.13
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.13
PRK12828	239	short chain dehydrogenase; Provisional	95.06
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	94.99
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.95
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	94.89
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.89
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.89
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.86
PRK12829	264	short chain dehydrogenase; Provisional	94.84
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.83
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.81
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.77
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.76
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.64
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.62
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	94.58
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.58
CHL00194	317	ycf39 Ycf39; Provisional	94.56
PRK07326	237	short chain dehydrogenase; Provisional	94.54
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	94.52
PLN03075	296	nicotianamine synthase; Provisional	94.49
PRK08328	231	hypothetical protein; Provisional	94.42
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	94.38
PRK08223	287	hypothetical protein; Validated	94.34
PLN03209	576	translocon at the inner envelope of chloroplast su	94.33
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	94.31
PRK08340	259	glucose-1-dehydrogenase; Provisional	94.31
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	94.23
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.16
PRK07454	241	short chain dehydrogenase; Provisional	94.16
PRK06196	315	oxidoreductase; Provisional	94.15
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	94.13
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.12
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.11
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.11
PRK07062	265	short chain dehydrogenase; Provisional	94.11
PRK08267	260	short chain dehydrogenase; Provisional	94.11
PRK05868	372	hypothetical protein; Validated	94.1
PRK07825	273	short chain dehydrogenase; Provisional	94.1
PRK07774	250	short chain dehydrogenase; Provisional	94.1
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.06
PRK07831	262	short chain dehydrogenase; Provisional	94.06
PRK05866	293	short chain dehydrogenase; Provisional	94.03
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	94.01
PRK07877	722	hypothetical protein; Provisional	94.0
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.99
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	93.98
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	93.93
PRK07890	258	short chain dehydrogenase; Provisional	93.92
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	93.91
PRK06194	287	hypothetical protein; Provisional	93.89
PRK06057	255	short chain dehydrogenase; Provisional	93.87
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.85
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.84
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	93.83
PLN00016	378	RNA-binding protein; Provisional	93.82
PRK07832	272	short chain dehydrogenase; Provisional	93.81
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.78
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	93.78
PRK07236	386	hypothetical protein; Provisional	93.78
PRK10538	248	malonic semialdehyde reductase; Provisional	93.77
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	93.74
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	93.74
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	93.72
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	93.72
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	93.7
PRK08163	396	salicylate hydroxylase; Provisional	93.7
PRK09186	256	flagellin modification protein A; Provisional	93.68
PRK10637	457	cysG siroheme synthase; Provisional	93.63
PRK08643	256	acetoin reductase; Validated	93.62
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	93.57
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.56
PRK12939	250	short chain dehydrogenase; Provisional	93.5
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	93.5
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.49
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.47
PRK07067	257	sorbitol dehydrogenase; Provisional	93.46
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	93.45
PRK06753	373	hypothetical protein; Provisional	93.44
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	93.4
PRK07063	260	short chain dehydrogenase; Provisional	93.4
COG2344	211	AT-rich DNA-binding protein [General function pred	93.39
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	93.36
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	93.35
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	93.33
PRK08251	248	short chain dehydrogenase; Provisional	93.3
PRK05854	313	short chain dehydrogenase; Provisional	93.28
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	93.26
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	93.25
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	93.25
PRK06847	375	hypothetical protein; Provisional	93.24
PRK05650	270	short chain dehydrogenase; Provisional	93.21
PRK07478	254	short chain dehydrogenase; Provisional	93.2
PRK07074	257	short chain dehydrogenase; Provisional	93.18
PRK05867	253	short chain dehydrogenase; Provisional	93.16
PRK08277	278	D-mannonate oxidoreductase; Provisional	93.15
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	93.13
PRK09242	257	tropinone reductase; Provisional	93.08
PRK07024	257	short chain dehydrogenase; Provisional	93.07
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	93.03
PRK11579	346	putative oxidoreductase; Provisional	93.03
PRK08374	336	homoserine dehydrogenase; Provisional	92.99
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	92.98
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	92.97
PRK07109	334	short chain dehydrogenase; Provisional	92.93
PRK08265	261	short chain dehydrogenase; Provisional	92.9
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.86
PRK06139	330	short chain dehydrogenase; Provisional	92.84
PRK07588	391	hypothetical protein; Provisional	92.8

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=1.4e-94  Score=797.75  Aligned_cols=518  Identities=31%  Similarity=0.475  Sum_probs=462.6

Q ss_pred             CccCCCCCChhHHHhCCCcceecCC-------------CchHHHHHHHHHHhhccCCCcchhhcccCCCCCc-----hHH
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAP-------------NQLVSTARQWALDILEHRRPWVATLYKTDKIEPL-----GEA   62 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~-------------~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~-----~~~   62 (535)
                      |+|||++++|+||+++||||+|||+             +++++.|.+++++++..+.+..+.....++..+.     ...
T Consensus       174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (737)
T TIGR02441       174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMTNPFVR  253 (737)
T ss_pred             HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhcccchhH
Confidence            5799999999999999999999987             4588888899988765421221111111121110     123


Q ss_pred             HHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCC
Q 009395           63 REIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLG  141 (535)
Q Consensus        63 ~~~~~~~~~~~~~~~~~-~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~  141 (535)
                      ..++..+++++.+++++ ||||.+++++|+.+...+++++++.|++.|.+|+.|++++++++.|+.++..++.+.    +
T Consensus       254 ~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~~----~  329 (737)
T TIGR02441       254 QQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNKF----G  329 (737)
T ss_pred             HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCC----C
Confidence            45678888899888875 999999999999999999999999999999999999999999999999999988643    1


Q ss_pred             CCCCCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          142 LAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       142 ~~~~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      ..++++++|+|||+|.||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|++++++
T Consensus       330 ~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  409 (737)
T TIGR02441       330 KPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY  409 (737)
T ss_pred             CCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence            23468999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCC
Q 009395          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTN  301 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~  301 (535)
                      +++++||+|||||||++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||+|++.+++|||++++
T Consensus       410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~  489 (737)
T TIGR02441       410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD  489 (737)
T ss_pred             HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCChhHHHHHHHhchHH
Q 009395          302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV  381 (535)
Q Consensus       302 ~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~  381 (535)
                      .|++++++.+..|++.+||.|++++|+|||++||++.++++||++++++|+++++||+++++||||||||+++|.+|+|+
T Consensus       490 ~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D~vGld~  569 (737)
T TIGR02441       490 GTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDV  569 (737)
T ss_pred             CCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCc--cCccHHHHHHCCCCCccCCceeeeecCCC--CCCCChhHHHHHHHHhhccCCcCCcccccC
Q 009395          382 AIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKFIEKARSMSGVAIDPKFAKL  457 (535)
Q Consensus       382 ~~~~~~~l~~~~~~~~~--~~~~l~~~~~~G~~G~k~g~GFY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (535)
                      ++++++.+++.+++++.  |++++++|+++|++|+|+|+|||+|++++  +..+++++..++...+.    .+.  ....
T Consensus       570 ~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k----~p~--~~~~  643 (737)
T TIGR02441       570 AEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKL----PPK--AEVS  643 (737)
T ss_pred             HHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhcc----Ccc--cccC
Confidence            99999999999888653  57899999999999999999999998654  46788988887754432    111  0135


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhh---hcCcchHHHHHHHHHhHhcC
Q 009395          458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFI---HRGFSKSSSCFKNLLCYFDQ  528 (535)
Q Consensus       458 ~~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~---~~G~~~~~~~~~~~~~~~~~  528 (535)
                      +.++|+||++.+++||+++|++|||+.+++|||.+|++|+|||+|+||||.   .+|+|.+.+.++.+++.+++
T Consensus       644 ~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~  717 (737)
T TIGR02441       644 SPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGV  717 (737)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence            678999999999999999999999977999999999999999998888875   58999999999999987763

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=2.1e-92  Score=779.00  Aligned_cols=514  Identities=31%  Similarity=0.546  Sum_probs=454.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCC----chHHHHHHHHHHHHHHH-
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEP----LGEAREIFKFARAQARK-   75 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-   75 (535)
                      |+|||++++|+||+++||||++||++++++.|.++++++.....++.++.  ..+..+    .......+..++++..+ 
T Consensus       166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (714)
T TIGR02437       166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAKGMVAQV  243 (714)
T ss_pred             HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999988665322222111  111111    11112235556665544 


Q ss_pred             hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeC
Q 009395           76 QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG  155 (535)
Q Consensus        76 ~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~  155 (535)
                      ..++||||..++++++.+...+++++++.|++.|.+++.|+++++++++|+.+|.+++.+..  .+..+++++||+|||+
T Consensus       244 ~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~~--~~~~~~~i~~v~ViGa  321 (714)
T TIGR02437       244 AGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAKK--ADKIAKDVKQAAVLGA  321 (714)
T ss_pred             hcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCCC--CCCCccccceEEEECC
Confidence            45689999999999999999999999999999999999999999999999999999886422  1234578999999999


Q ss_pred             ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecc
Q 009395          156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII  235 (535)
Q Consensus       156 G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avp  235 (535)
                      |.||++||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|+++++++++++||+||||||
T Consensus       322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~  401 (714)
T TIGR02437       322 GIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVV  401 (714)
T ss_pred             chHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEEcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             CChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 009395          236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG  315 (535)
Q Consensus       236 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~  315 (535)
                      |++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||+|++.+++|||++++.|++++++.+.+++
T Consensus       402 E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~  481 (714)
T TIGR02437       402 ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYA  481 (714)
T ss_pred             ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCChhHHHHHHHhchHHHHHHHHHHHHhCC
Q 009395          316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP  394 (535)
Q Consensus       316 ~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~  394 (535)
                      +.+||.|++++|+|||++||++.++++||++++++|++|++||++++ +||||||||+++|.+|+|+++++++.++..++
T Consensus       482 ~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~  561 (714)
T TIGR02437       482 SKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEGFP  561 (714)
T ss_pred             HHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999998 89999999999999999999999999999888


Q ss_pred             CCC--ccCccHHHHHHCCCCCccCCceeeeecCC---C-CCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHH
Q 009395          395 ERT--YKSMIIPIMQEDKRAGETTRKGFYLYDER---R-KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFF  468 (535)
Q Consensus       395 ~~~--~~~~~l~~~~~~G~~G~k~g~GFY~y~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~  468 (535)
                      +++  .+++++++|+++|++|+|+|+|||+|+++   + +..+|+++..++...+.     +   ...+++++|+||++.
T Consensus       562 ~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~i~~Rll~  633 (714)
T TIGR02437       562 DRMGKDGRDAIDALFEAKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVY-----E---QRDFDDEEIIARMMI  633 (714)
T ss_pred             cccccchhHHHHHHHHCCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhc-----c---cCCCCHHHHHHHHHH
Confidence            764  24689999999999999999999999643   2 35678888877754322     1   124678899999999


Q ss_pred             HHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhh---hcCcchHHHHHHHHHhHhc
Q 009395          469 PVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFI---HRGFSKSSSCFKNLLCYFD  527 (535)
Q Consensus       469 ~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~---~~G~~~~~~~~~~~~~~~~  527 (535)
                      +++||+++|++|||+.+++|||.++++|+|||+|++|||.   .+|+|.+...++.+ ..++
T Consensus       634 ~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~-~~~g  694 (714)
T TIGR02437       634 PMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQY-AELG  694 (714)
T ss_pred             HHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHH-HHhC
Confidence            9999999999999777999999999999999997777775   59999999999954 3554

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=1.9e-91  Score=771.81  Aligned_cols=511  Identities=34%  Similarity=0.531  Sum_probs=454.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCC--CCchHHHHHHHHHHHHHHHhCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKI--EPLGEAREIFKFARAQARKQAP   78 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   78 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++.  .  +.+++.....++  .++.....++..+.++++++++
T Consensus       162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~--~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~  237 (699)
T TIGR02440       162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKG--K--PIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQ  237 (699)
T ss_pred             HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhC--C--CCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence            578999999999999999999999999999999999751  1  111110111111  0111223455666777777765


Q ss_pred             -CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeCCh
Q 009395           79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL  157 (535)
Q Consensus        79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~G~  157 (535)
                       +|||+.++|++++.+...+++++++.|++.|..++.|+|+++++++|+.++..++.+.. .  ..+.+++||+|||+|.
T Consensus       238 ~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~  314 (699)
T TIGR02440       238 GNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAKIKKVGILGGGL  314 (699)
T ss_pred             cCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCcccccEEEEECCcH
Confidence             79999999999999999999999999999999999999999999999999988876442 2  2346789999999999


Q ss_pred             hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccC
Q 009395          158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE  236 (535)
Q Consensus       158 mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe  236 (535)
                      ||++||..++ ++|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+.+|+++++++++++||+|||||||
T Consensus       315 mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~adlViEav~E  394 (699)
T TIGR02440       315 MGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFE  394 (699)
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhccCCEEEEeccc
Confidence            9999999998 589999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Q 009395          237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK  316 (535)
Q Consensus       237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~  316 (535)
                      ++++|+++|+++++++++++|++||||+++++++++.+.+|+||+|+|||||++.+++|||++++.|++++++.+.+|++
T Consensus       395 ~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~  474 (699)
T TIGR02440       395 DLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAK  474 (699)
T ss_pred             cHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCC
Q 009395          317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER  396 (535)
Q Consensus       317 ~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~  396 (535)
                      .+||.|++++|.|||++||++.++++||++++++|+++++||.+++++|||||||+++|.+|+|+++++++.+++.++++
T Consensus       475 ~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~  554 (699)
T TIGR02440       475 KQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGER  554 (699)
T ss_pred             HcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhchHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CccCccHHHHHHCCCCCccCCceeeeecCCC-CCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHHHHHHHHH
Q 009395          397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR-KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC  475 (535)
Q Consensus       397 ~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~  475 (535)
                      +.|++++++|+++|++|+|||+|||+|++++ +..+++.+..++..       .+   ...++..+|+||++.+++||++
T Consensus       555 ~~~~~~l~~~v~~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~v~~Rll~~~~~Ea~  624 (699)
T TIGR02440       555 FKAPAVFDKLLSDDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI-------KP---GVDKEASAVAERCVMLMLNEAV  624 (699)
T ss_pred             CCCcHHHHHHHHCCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc-------CC---CCCCCHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999998543 45678877765521       11   1246788999999999999999


Q ss_pred             HHHhcCcCCChhHHHHHHHhccCCCC---CcchhhhhcCcchHHHHHHHHHhHhcC
Q 009395          476 RVFAEGIAVKAADLDIASVMGMGFPP---YRFVTFIHRGFSKSSSCFKNLLCYFDQ  528 (535)
Q Consensus       476 ~~~~~gv~~~~~diD~~~~~g~g~~~---~~~g~~~~~G~~~~~~~~~~~~~~~~~  528 (535)
                      +|++|||+.+++|||.++++|+|||+   |||.++|.+|+|.+++.++.+++.+++
T Consensus       625 ~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~  680 (699)
T TIGR02440       625 RCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGD  680 (699)
T ss_pred             HHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCC
Confidence            99999995599999999999999998   555555679999999999999988765

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.1e-90  Score=767.55  Aligned_cols=511  Identities=34%  Similarity=0.575  Sum_probs=452.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCc----hHHHHHHHHHHHHHHHh
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPL----GEAREIFKFARAQARKQ   76 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   76 (535)
                      |++||++++|+||+++||||+|||+++++++|.++|++++.++.+|..+.  .+..++.    .....+++.+++.+.++
T Consensus       166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~--~~~~~p~a~~~~~~~~~~~~~k~~~~~~  243 (715)
T PRK11730        166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARR--QPKLEPLKLSKIEAMMSFTTAKGMVAQK  243 (715)
T ss_pred             HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcccccc--CcccccccccchhHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999998632222211  1111111    12233556666666454


Q ss_pred             -CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeC
Q 009395           77 -APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGG  155 (535)
Q Consensus        77 -~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~  155 (535)
                       .++||++..++++++.+...+++++++.|.+.|..++.|+|+++++++|+++|.+++.+..  ....+++++||+|||+
T Consensus       244 ~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~--~~~~~~~i~~v~ViGa  321 (715)
T PRK11730        244 AGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKK--LAKDAKPVKQAAVLGA  321 (715)
T ss_pred             hccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC--CCCCccccceEEEECC
Confidence             4589999999999999988899999999999999999999999999999999999876432  1124467999999999


Q ss_pred             ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEecc
Q 009395          156 GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII  235 (535)
Q Consensus       156 G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avp  235 (535)
                      |.||.+||..++.+|++|+++|++++.++++.+++.+.+++.+++|.+++.+.+..+++|+++++++++++||+||||||
T Consensus       322 G~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~  401 (715)
T PRK11730        322 GIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVV  401 (715)
T ss_pred             chhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCEEEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Q 009395          236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIG  315 (535)
Q Consensus       236 e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~  315 (535)
                      |++++|+++|+++++++++++||+||||++++++|++.+.+|+||+|+|||+|++.+++|||++++.|++++++.+..|+
T Consensus       402 E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~  481 (715)
T PRK11730        402 ENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYA  481 (715)
T ss_pred             CcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCChhHHHHHHHhchHHHHHHHHHHHHhCC
Q 009395          316 KKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFP  394 (535)
Q Consensus       316 ~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~  394 (535)
                      +.+||.|++++|+|||++||++.++++|+++++++|.++++||++++ ++|||||||+++|.+|+|+++++++.++..++
T Consensus       482 ~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~  561 (715)
T PRK11730        482 SKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFP  561 (715)
T ss_pred             HHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999 89999999999999999999999999999888


Q ss_pred             CCC--ccCccHHHHHHCCCCCccCCceeeeecCCC----CCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHH
Q 009395          395 ERT--YKSMIIPIMQEDKRAGETTRKGFYLYDERR----KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFF  468 (535)
Q Consensus       395 ~~~--~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~  468 (535)
                      ++.  .+++++++|+++|++|+|+|+|||+|+++.    +...|+++.+++.....    .    ...+++++|+||++.
T Consensus       562 ~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~i~nRll~  633 (715)
T PRK11730        562 DRMKKDYRDAIDVLFEAKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQ----P----KREFSDEEIIARMMI  633 (715)
T ss_pred             CccccchhHHHHHHHHCCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhcc----c----cCCCCHHHHHHHHHH
Confidence            764  246899999999999999999999997432    34678888777764321    1    124678899999999


Q ss_pred             HHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhh---hhcCcchHHHHHHHHH
Q 009395          469 PVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTF---IHRGFSKSSSCFKNLL  523 (535)
Q Consensus       469 ~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~---~~~G~~~~~~~~~~~~  523 (535)
                      +++||+++|++||++.+|+|||.++++|+|||++++|||   |.+|+|++.++++.+.
T Consensus       634 ~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~  691 (715)
T PRK11730        634 PMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA  691 (715)
T ss_pred             HHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH
Confidence            999999999999985599999999999999998555555   6799999999999754

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.5e-90  Score=766.57  Aligned_cols=511  Identities=34%  Similarity=0.529  Sum_probs=456.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCC--CchHHHHHHHHHHHHHHHhCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIE--PLGEAREIFKFARAQARKQAP   78 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   78 (535)
                      |+|||++++|+||+++||||++||+++++++|.++|+++...    +++.....++.  ++......+..++++++++++
T Consensus       167 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  242 (708)
T PRK11154        167 MILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPA----RRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQ  242 (708)
T ss_pred             HHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCc----cCcCCchhhhcccCchhHHHHHHHHHHHHHHhcc
Confidence            579999999999999999999999999999999999884221    01100000011  111224567778888888876


Q ss_pred             -CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeCCh
Q 009395           79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL  157 (535)
Q Consensus        79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~G~  157 (535)
                       +|+|+..+|++++.+...++++++..|.+.|..++.|+|+++++++|+.++.+++.+.. +  ..+.+++||+|||+|.
T Consensus       243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~  319 (708)
T PRK11154        243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL  319 (708)
T ss_pred             cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence             79999999999999998899999999999999999999999999999999988876442 2  2346799999999999


Q ss_pred             hhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccC
Q 009395          158 MGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE  236 (535)
Q Consensus       158 mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe  236 (535)
                      ||++||..++ .+|++|+++|++++.++++..++.+.+++.+++|.+++.+.+..+++|+++++++++++||+|||||||
T Consensus       320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E  399 (708)
T PRK11154        320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE  399 (708)
T ss_pred             hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence            9999999999 889999999999999999999999999999999999998888899999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Q 009395          237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK  316 (535)
Q Consensus       237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~  316 (535)
                      ++++|+++|+++++++++++|++||||++++++|++.+.+|+||+|+|||+|++.+++|||++++.|++++++.+..+++
T Consensus       400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~  479 (708)
T PRK11154        400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK  479 (708)
T ss_pred             cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCC
Q 009395          317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER  396 (535)
Q Consensus       317 ~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~  396 (535)
                      .+||.|++++|.|||++||++.++++||++++++|+++++||.+++++|||+|||+++|.+|+|++.++++.+++.++++
T Consensus       480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~  559 (708)
T PRK11154        480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTKIIPILEAALGER  559 (708)
T ss_pred             HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CccCccHHHHHHCCCCCccCCceeeeecCCC---CCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHHHHHHH
Q 009395          397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERR---KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE  473 (535)
Q Consensus       397 ~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~e  473 (535)
                      +.|++++++|+++|++|+|+|+|||+|+++.   +...++++...+..       .+   ...++..+|+||++.+++||
T Consensus       560 ~~~~~~l~~~v~~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~g~i~~Rll~~~~nE  629 (708)
T PRK11154        560 FSAPAAFDKLLNDDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI-------TP---QSRLSANEIAERCVMLMLNE  629 (708)
T ss_pred             CCCCHHHHHHHHCCCCcccCCceEEECCCCcccccccCCHHHHHHhcc-------CC---CCCCCHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999998532   24567777655421       11   12578899999999999999


Q ss_pred             HHHHHhcCcCCChhHHHHHHHhccCCCCCcchhh---hhcCcchHHHHHHHHHhHhcC
Q 009395          474 ACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTF---IHRGFSKSSSCFKNLLCYFDQ  528 (535)
Q Consensus       474 a~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~---~~~G~~~~~~~~~~~~~~~~~  528 (535)
                      +++|++|||+.+++|||.+|++|+|||++++|||   |.+|+|.+.+.++.+++.+++
T Consensus       630 a~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~  687 (708)
T PRK11154        630 AVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGD  687 (708)
T ss_pred             HHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCC
Confidence            9999999995699999999999999999555555   679999999999999988765

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=100.00  E-value=5.3e-73  Score=601.16  Aligned_cols=385  Identities=31%  Similarity=0.487  Sum_probs=342.5

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      .+++||+|||+|.||++||..++++|++|++||++++.++++.+++++.+++.+++|.+++++.+..+++++.+++++++
T Consensus         3 ~~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l   82 (503)
T TIGR02279         3 INVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL   82 (503)
T ss_pred             CCccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS  304 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts  304 (535)
                      .+||+|||||||+.++|+.+|+++++.+++++||+||||+++++++++.+.+|.|++|+|||+|++.++++|+++++.|+
T Consensus        83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts  162 (503)
T TIGR02279        83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATA  162 (503)
T ss_pred             CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHH
Q 009395          305 PQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVA  382 (535)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~  382 (535)
                      +++++.+.++++.+||.|++++|+|||++||++.++++||+.++++|. +|++||++++ ++|||||||+++|.+|+|++
T Consensus       163 ~e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~Gldv~  242 (503)
T TIGR02279       163 AEVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVN  242 (503)
T ss_pred             HHHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhhhHHH
Confidence            999999999999999999999999999999999999999999999984 9999999999 89999999999999999999


Q ss_pred             HHHHHHHHHhC-CCC-CccCccHHHHHHCCCCCccCCceeeeecCCCCC-CC----------------------------
Q 009395          383 IATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKA-SP----------------------------  431 (535)
Q Consensus       383 ~~~~~~l~~~~-~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~~~-~~----------------------------  431 (535)
                      +++++.+++.+ ++. +.|++++++|+++|++|+|||+|||+|+++.+. .+                            
T Consensus       243 ~~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (503)
T TIGR02279       243 FAVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYREEAEAVVPLEAVSDSFSPRVTVVGDIGAAAPLLARL  322 (503)
T ss_pred             HHHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCCCCCCCCCCccccccccccceeecccccchhhHHHHH
Confidence            99999988864 554 457788999999999999999999999864321 11                            


Q ss_pred             -----------------------------------------ChhHHHHHHHHhhccCC--cCCc----------------
Q 009395          432 -----------------------------------------DPEVKKFIEKARSMSGV--AIDP----------------  452 (535)
Q Consensus       432 -----------------------------------------~~~~~~~~~~~~~~~~~--~~~~----------------  452 (535)
                                                               |+.+..++...+....+  .+..                
T Consensus       323 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~  402 (503)
T TIGR02279       323 EAAGIKVEKKSGRGVTQIGDALLALTDGRTAQARAIELARPNLVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQ  402 (503)
T ss_pred             HhccccccccccccccccchhhhhhccccchhhhhhhcCCCCchHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence                                                     12222222211111111  1100                


Q ss_pred             ---ccccCCH--HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhc
Q 009395          453 ---KFAKLSE--KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFD  527 (535)
Q Consensus       453 ---~~~~~~~--~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~  527 (535)
                         .+..+.+  .+|+||++.+++|||++++++|++ +++|||.+|++|+|||+||+.++|.+|+|.+++++++|++.++
T Consensus       403 ~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~GP~~~~D~~Gld~~~~~l~~l~~~~~  481 (503)
T TIGR02279       403 AGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPYGPLAWAAQLGWQRILRVLENLQHHYG  481 (503)
T ss_pred             cCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCcCHHHHHHHhCHHHHHHHHHHHHHHcC
Confidence               0012333  699999999999999999999999 9999999999999999999999999999999999999998888


Q ss_pred             CCC
Q 009395          528 QGR  530 (535)
Q Consensus       528 ~~~  530 (535)
                      +++
T Consensus       482 ~~~  484 (503)
T TIGR02279       482 EER  484 (503)
T ss_pred             CCc
Confidence            644

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.1e-70  Score=585.47  Aligned_cols=386  Identities=31%  Similarity=0.486  Sum_probs=341.7

Q ss_pred             CCCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          144 PRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       144 ~~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      .+++++|+|||+|.||++||..++++|++|++||++++.++.+.+++++.+++.+++|.++.++.+..++++++++++++
T Consensus         4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~   83 (507)
T PRK08268          4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD   83 (507)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t  303 (535)
                      +.+||+|||||||+.++|+.+|++++..+++++|++|||||+++++++..+.+|+|++|+|||+|++.++|+|+++++.|
T Consensus        84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T  163 (507)
T PRK08268         84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT  163 (507)
T ss_pred             hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHH
Q 009395          304 SPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGV  381 (535)
Q Consensus       304 s~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~  381 (535)
                      ++++++.+.++++.+||.+++++|+|||++||++.++++|++.++++|. ++++||++++ ++|||||||+++|.+|+|+
T Consensus       164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~Gldv  243 (507)
T PRK08268        164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV  243 (507)
T ss_pred             CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhchHH
Confidence            9999999999999999999999999999999999999999999999985 9999999998 8999999999999999999


Q ss_pred             HHHHHHHHHHhC-CC-CCccCccHHHHHHCCCCCccCCceeeeecCCCC-CCCChh--------------------HHHH
Q 009395          382 AIATGMQFIENF-PE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDPE--------------------VKKF  438 (535)
Q Consensus       382 ~~~~~~~l~~~~-~~-~~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~~-~~~~~~--------------------~~~~  438 (535)
                      .+++.+.+++.+ ++ ++.+++++++|+++|++|+|+|+|||+|+++++ ...+++                    ..++
T Consensus       244 ~~~v~~~~~~~~~~~~~~~~~~~~~~lv~~g~lG~ksG~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (507)
T PRK08268        244 NHAVMESVYRQFYQEPRFRPSLIQQELVAAGRLGRKSGQGFYRYADGAKQPPAEAAPPAALPPVWVSADVEGDLAALARL  323 (507)
T ss_pred             HHHHHHHHHHHhcCCCcCCccHHHHHHHHCCCCccccCCeeeECCCCCCCCCCCccccccCccccccccccchhHHHHHH
Confidence            999999888764 33 555778999999999999999999999975432 222222                    1122


Q ss_pred             HHHHh----------------------------hccCCcC-Cc------------ccccC--------------------
Q 009395          439 IEKAR----------------------------SMSGVAI-DP------------KFAKL--------------------  457 (535)
Q Consensus       439 ~~~~~----------------------------~~~~~~~-~~------------~~~~~--------------------  457 (535)
                      +....                            ......+ +.            +...+                    
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~  403 (507)
T PRK08268        324 LERLGATIETGEGPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQ  403 (507)
T ss_pred             HHhhccccccccccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            11000                            0000000 00            00001                    


Q ss_pred             ----------CHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhc
Q 009395          458 ----------SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFD  527 (535)
Q Consensus       458 ----------~~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~  527 (535)
                                +..+|+||++.+++||+++|++||++ +++|||.+|++|+|||+||+.++|.+|+|..+++++.++..++
T Consensus       404 ~gk~pi~v~d~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g  482 (507)
T PRK08268        404 DGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYG  482 (507)
T ss_pred             cCCeeEEeCCCccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence                      45699999999999999999999998 9999999999999999999999999999999999999998888


Q ss_pred             CCC
Q 009395          528 QGR  530 (535)
Q Consensus       528 ~~~  530 (535)
                      +++
T Consensus       483 ~~~  485 (507)
T PRK08268        483 DPR  485 (507)
T ss_pred             CCc
Confidence            644

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=100.00  E-value=2e-66  Score=509.25  Aligned_cols=280  Identities=38%  Similarity=0.667  Sum_probs=270.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      .++||+|||+|.||++||..++..|++|+++|++++.++++...+.+.+++.+++|.+++.+.+..+++++.++++.+++
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~   81 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK   81 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence            57899999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~  305 (535)
                      +||+|||+|+|++++|+++|++++.++++++|++||||+++++++++.+.+|+||+|+|||||++.|+|||++++..|++
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~  161 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD  161 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHH
Q 009395          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (535)
Q Consensus       306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~  383 (535)
                      ++++.+.+|.+.+||.|++++|.|||++||++.++++||++++.+|+ +|++||.+++ ++|||||||+++|.+|+|+++
T Consensus       162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~  241 (307)
T COG1250         162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVML  241 (307)
T ss_pred             HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHhHHHHH
Confidence            99999999999999999888999999999999999999999999995 9999999999 899999999999999999999


Q ss_pred             HHHHHHHHhCCCC-C-ccCccHHHHHHCCCCCccCCceeeeecC
Q 009395          384 ATGMQFIENFPER-T-YKSMIIPIMQEDKRAGETTRKGFYLYDE  425 (535)
Q Consensus       384 ~~~~~l~~~~~~~-~-~~~~~l~~~~~~G~~G~k~g~GFY~y~~  425 (535)
                      ++++.+++.++++ . .|++++++|++.|++|+|||+|||+|++
T Consensus       242 ~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         242 HIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             HHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence            9999999888843 3 3678999999999999999999999985

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=2.6e-65  Score=462.06  Aligned_cols=280  Identities=36%  Similarity=0.574  Sum_probs=264.8

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHhhhccccccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-----FEKTISLLTGVL  219 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-----~~~~~~~i~~~~  219 (535)
                      .+++.|+|||+|.||++||+..+.+|++|+++|++++.+.++.+.|.+.+.+..+++..+...     ++..+++|+.++
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999999999999999999998888877665333     366788999999


Q ss_pred             Ccc-cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEE
Q 009395          220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV  298 (535)
Q Consensus       220 ~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv  298 (535)
                      |.+ .+.++|+|||++.|++++|+++|++|+..+++++|++||||++.+++++..+.+|.||.|+|||||+..|+|+|++
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi  168 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI  168 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence            885 4789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHH
Q 009395          299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADL  376 (535)
Q Consensus       299 ~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~  376 (535)
                      .++.||+|+......|.+.+||+++-++|.||||+||++.++++||+++++.|. +.+|||.+|+ |.|+||||||+.|.
T Consensus       169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy  248 (298)
T KOG2304|consen  169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY  248 (298)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence            999999999999999999999999999999999999999999999999999996 9999999999 99999999999999


Q ss_pred             hchHHHHHHHHHHHHhCCCC--CccCccHHHHHHCCCCCccCCceeeeec
Q 009395          377 VGFGVAIATGMQFIENFPER--TYKSMIIPIMQEDKRAGETTRKGFYLYD  424 (535)
Q Consensus       377 ~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~~~~G~~G~k~g~GFY~y~  424 (535)
                      +|||++.-+|+-|++.+++.  +.|+|++.++|++|++|+|+|+|||+|.
T Consensus       249 vGLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Yk  298 (298)
T KOG2304|consen  249 VGLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKYK  298 (298)
T ss_pred             hhHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceecC
Confidence            99999999999999999764  4599999999999999999999999983

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=7e-61  Score=476.96  Aligned_cols=279  Identities=33%  Similarity=0.547  Sum_probs=269.2

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      ++++||+|||+|.||++||..++.+|++|++||++++.++.+.+++.+.+++.+++|.++..+.+..+++++.+++++++
T Consensus         3 ~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~   82 (286)
T PRK07819          3 DAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF   82 (286)
T ss_pred             CCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence            45789999999999999999999999999999999999999999999999999999999999888999999999999889


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhc-CCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~-~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t  303 (535)
                      ++||+|||||||++++|+++|+++++.+ ++++|++||||++++++++..+.+|+|++|+|||+|++.++++|++++..|
T Consensus        83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T  162 (286)
T PRK07819         83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT  162 (286)
T ss_pred             CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence            9999999999999999999999999999 899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH-hcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchH
Q 009395          304 SPQVIVDLLDIGK-KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG  380 (535)
Q Consensus       304 s~e~~~~~~~l~~-~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld  380 (535)
                      ++++++.+.+++. .+||.|++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|
T Consensus       163 ~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~Gld  242 (286)
T PRK07819        163 SEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLD  242 (286)
T ss_pred             CHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhccH
Confidence            9999999999988 599999999999999999999999999999999997 9999999999 999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCC-CccCccHHHHHHCCCCCccCCceeeee
Q 009395          381 VAIATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY  423 (535)
Q Consensus       381 ~~~~~~~~l~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y  423 (535)
                      ++.++++.+++.++++ +.|++++++|+++|++|+|+|+|||+|
T Consensus       243 ~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~GfY~y  286 (286)
T PRK07819        243 TVKAIADSMYEEFKEPLYAPPPLLLRMVEAGLLGKKSGRGFYTY  286 (286)
T ss_pred             HHHHHHHHHHHHcCCCCCCCCHHHHHHHHCCCCcccCCCEeccC
Confidence            9999999999999874 468899999999999999999999998

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=7.6e-57  Score=450.24  Aligned_cols=279  Identities=27%  Similarity=0.445  Sum_probs=262.8

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHhhhcccccccCcc-c
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEKTISLLTGVLDYE-S  223 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~  223 (535)
                      +++||+|||+|.||++||..++.+|++|++||++++.++.+.+.+.+......+.+.++..+ .+....+++.+++++ .
T Consensus         2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            46899999999999999999999999999999999999999888888888888888887666 666678888888886 5


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t  303 (535)
                      +++||+||+|+|++.++|+++++++.+.+++++||+||+|+++++++++.+.+|.||+|+|||+|++.++++|+++++.|
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t  161 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT  161 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence            89999999999999999999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCceEEeC-CcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchH
Q 009395          304 SPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG  380 (535)
Q Consensus       304 s~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld  380 (535)
                      ++++++.+.++++.+|+.|+++. |.|||++||++.++++||++++++|+ +|++||++++ ++|+|+|||+++|.+|+|
T Consensus       162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld  241 (287)
T PRK08293        162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLD  241 (287)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhchH
Confidence            99999999999999999999985 99999999999999999999999997 9999999998 999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCc--cCccHHHHHHCCCCCccCCceeeeec
Q 009395          381 VAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGETTRKGFYLYD  424 (535)
Q Consensus       381 ~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~G~~G~k~g~GFY~y~  424 (535)
                      ++.++++++++.++++++  |++++++|+++|++|+|+|+|||+|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~y~  287 (287)
T PRK08293        242 TAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYNYP  287 (287)
T ss_pred             HHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCccccCc
Confidence            999999999999988753  78999999999999999999999994

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.3e-56  Score=447.26  Aligned_cols=281  Identities=29%  Similarity=0.517  Sum_probs=267.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      ++||+|||+|.||.+||..++++|++|++||++++.++.+.+++...+...++.|.++..+.+....+++.++++ +.++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            468999999999999999999999999999999999999988888888888888999888777788888888888 4689


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~  305 (535)
                      +||+||+|+|++.++|+.+++++.+.+++++|+++|+|+++++++++.+.+|.|++|+||++|++.++++|+++++.|++
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~  160 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD  160 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHH
Q 009395          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (535)
Q Consensus       306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~  383 (535)
                      ++++.++++++.+|+.+++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus       161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  240 (288)
T PRK09260        161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRL  240 (288)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999999999999997 9999999999 999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCccCccHHHHHHCCCCCccCCceeeeecCCC
Q 009395          384 ATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR  427 (535)
Q Consensus       384 ~~~~~l~~~~~~~~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~  427 (535)
                      ++++.+++.+++++.|++++.+|+++|++|+|+|+|||+|++++
T Consensus       241 ~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~  284 (288)
T PRK09260        241 NNLKYLHETLGEKYRPAPLLEKYVKAGRLGRKTGRGVYDYTNRE  284 (288)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHCCCCccccCCEEEECCCCC
Confidence            99999999999888899999999999999999999999998754

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5.5e-56  Score=443.32  Aligned_cols=278  Identities=35%  Similarity=0.607  Sum_probs=265.9

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +++||+|||+|.||.+||..++.+|++|+++|++++.++.+.+++++.++..++.|.++..+......+++.++++++++
T Consensus         2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~   81 (282)
T PRK05808          2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK   81 (282)
T ss_pred             CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence            36799999999999999999999999999999999999999889999999999999888887777778888888888899


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~  305 (535)
                      +||+||+|+||+..+|+++++++.++++++++++|+||+++++.+++.+.+|.|++|+|||+|++.++++|+++++.|++
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~  161 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD  161 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHH
Q 009395          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (535)
Q Consensus       306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~  383 (535)
                      ++++.+.++++.+|+.|++++|.|||+.||++.++++||++++++|+ +|++||.+++ |+|||+|||+++|.+|+|.+.
T Consensus       162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~  241 (282)
T PRK05808        162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIGLDTCL  241 (282)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999997 9999999999 999999999999999999999


Q ss_pred             HHHHHHHHhCCCC-CccCccHHHHHHCCCCCccCCceeeee
Q 009395          384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLY  423 (535)
Q Consensus       384 ~~~~~l~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y  423 (535)
                      ++++.+++.++++ +.|++++++|+++|++|+|+|+|||+|
T Consensus       242 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y  282 (282)
T PRK05808        242 AIMEVLYEGFGDSKYRPCPLLRKMVAAGWLGRKTGRGFYDY  282 (282)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCcccCC
Confidence            9999999999874 458889999999999999999999998

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.1e-55  Score=442.89  Aligned_cols=279  Identities=32%  Similarity=0.548  Sum_probs=262.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH---HHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA---NLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +++||+|||+|.||.+||..++++|++|++||++++.++.+.+++++   .+...++.|.++..+.+....++..+++++
T Consensus         2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~   81 (291)
T PRK06035          2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE   81 (291)
T ss_pred             CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence            47899999999999999999999999999999999999988777665   356677888888888888888888888887


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCC
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQ  302 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~  302 (535)
                      .+++||+||+|+|++.++|+++++++.+.+++++|++||||+++++++++.+.+|.|++|+|||+|++.++++|+++++.
T Consensus        82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~  161 (291)
T PRK06035         82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL  161 (291)
T ss_pred             HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence            88999999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchH
Q 009395          303 TSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG  380 (535)
Q Consensus       303 ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld  380 (535)
                      |++++++.+.++++.+|+.|++++|.|||++||++.++++||++++++|+ +++|||++++ ++|+|+|||+++|.+|+|
T Consensus       162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~  241 (291)
T PRK06035        162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGID  241 (291)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999997 9999999998 999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCC-ccCccHHHHHHCCCCCccC-----Cceeeeec
Q 009395          381 VAIATGMQFIENFPERT-YKSMIIPIMQEDKRAGETT-----RKGFYLYD  424 (535)
Q Consensus       381 ~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~G~~G~k~-----g~GFY~y~  424 (535)
                      ++.++++.+++.+++++ .|++++++|+++|++|+||     |+|||+|.
T Consensus       242 ~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~y~  291 (291)
T PRK06035        242 TVYHIAEYLYEETGDPQFIPPNSLKQMVLNGYVGDKKVKYGSKGGWFDYY  291 (291)
T ss_pred             HHHHHHHHHHHHcCCCcCCccHHHHHHHHCCCCcCCCCCCCCCceeeecC
Confidence            99999999999998855 5788999999999999999     99999983

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=100.00  E-value=2.4e-55  Score=441.50  Aligned_cols=282  Identities=31%  Similarity=0.554  Sum_probs=268.7

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +++||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.+++.++.|.++..+.+..++++.++++++.++
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   82 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR   82 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999888888888888888888899


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~  305 (535)
                      +||+||+||||++++|+.+++++.+.+++++||+||||+++++++++.+.++.+++|+||++|++.++++|+++++.|++
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~  162 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD  162 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHH
Q 009395          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (535)
Q Consensus       306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~  383 (535)
                      ++++.+.++++.+|+.+++++|.|||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus       163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~  242 (295)
T PLN02545        163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCL  242 (295)
T ss_pred             HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhchHHHH
Confidence            99999999999999999999999999999999999999999999997 9999999999 999999999999999999999


Q ss_pred             HHHHHHHHhCCCC-CccCccHHHHHHCCCCCccCCceeeeecCCC
Q 009395          384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERR  427 (535)
Q Consensus       384 ~~~~~l~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~  427 (535)
                      ++++.+++.++++ +.|++++.+|+++|++|+|+|+|||+|++++
T Consensus       243 ~~~~~l~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~~~~  287 (295)
T PLN02545        243 SIMKVLHEGLGDSKYRPCPLLVQYVDAGRLGRKSGRGVYHYDGKK  287 (295)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCcccCCCeeeECCCCC
Confidence            9999999999875 4688999999999999999999999998654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5.3e-55  Score=438.43  Aligned_cols=281  Identities=32%  Similarity=0.528  Sum_probs=266.3

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +++||+|||+|.||.+||..++++|++|++||++++.++.+.+++.+.+...++.|.++..+.+..+.+++.++++++++
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   82 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA   82 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence            47899999999999999999999999999999999999998888888888888889888877777778888888888899


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~  305 (535)
                      +||+||+|+|+++++|+.+++++.+.++++++++||||+++++++++.+.+|.|++|+||++|++.++++|++++..|++
T Consensus        83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~  162 (292)
T PRK07530         83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE  162 (292)
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence            99999999999999999999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHH
Q 009395          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (535)
Q Consensus       306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~  383 (535)
                      ++++.+.++++.+|+.+++++|.|||++||++.++++|++.++++|+ ++++||.+++ ++|||+|||+++|.+|+|++.
T Consensus       163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~  242 (292)
T PRK07530        163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIGLDTCL  242 (292)
T ss_pred             HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999998 9999999999 999999999999999999999


Q ss_pred             HHHHHHHHhCCCC-CccCccHHHHHHCCCCCccCCceeeeecCC
Q 009395          384 ATGMQFIENFPER-TYKSMIIPIMQEDKRAGETTRKGFYLYDER  426 (535)
Q Consensus       384 ~~~~~l~~~~~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~  426 (535)
                      ++++.+++.++++ +.|++++.+|+++|++|+|+|+|||+|+++
T Consensus       243 ~~~~~~~~~~~~~~~~p~~~l~~~v~~g~~G~k~g~Gfy~y~~~  286 (292)
T PRK07530        243 SIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDYRGE  286 (292)
T ss_pred             HHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeeCCCC
Confidence            9999999998874 457889999999999999999999999754

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=7.8e-56  Score=430.67  Aligned_cols=356  Identities=40%  Similarity=0.611  Sum_probs=323.6

Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCC
Q 009395          158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN  237 (535)
Q Consensus       158 mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~  237 (535)
                      ||++||..+..+|++|++.|.|...++.+..++...+.+.+.++.++..+.+....++..+.|+..+++||+|||++.|+
T Consensus         1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed   80 (380)
T KOG1683|consen    1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED   80 (380)
T ss_pred             CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence            89999999999999999999999999999999999999999999999999888888999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHh
Q 009395          238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK  317 (535)
Q Consensus       238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~~  317 (535)
                      +++|++++.+|++++++++|++||||+++++.+++.+..|++++|+|||.|++.++++|++.+..||..++..+.+....
T Consensus        81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~  160 (380)
T KOG1683|consen   81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP  160 (380)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEeCCcccchhhhhHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCC
Q 009395          318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER-GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER  396 (535)
Q Consensus       318 lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~-G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~  396 (535)
                      .|+.|++|++++||.+||++.+++.++.++..+ |++|.++|.+...||||+|||++.|..|+|+..+....+...++++
T Consensus       161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r  240 (380)
T KOG1683|consen  161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPR  240 (380)
T ss_pred             cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccch
Confidence            999999999999999999999999999999877 8999999999999999999999999999999877766655554433


Q ss_pred             CccCccHHHHHHCCCCCccCCceeeeecCCCCCCCC-hhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHHHHHHHHH
Q 009395          397 TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASPD-PEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEAC  475 (535)
Q Consensus       397 ~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~  475 (535)
                           +.+.|++.|+.|+|||+|||.|+++.+...+ .+..+.+....      .....+..+++++++|++.+++||++
T Consensus       241 -----~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~------~~~~~r~~~~ed~v~~~~~p~VnEal  309 (380)
T KOG1683|consen  241 -----IEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLS------LTPNPRVADDEDFVEFLLSPFVNEAL  309 (380)
T ss_pred             -----hHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhc------cCCCcccCCHHHHHHHHhhHHHHHHH
Confidence                 6889999999999999999999876433223 45555554332      11122457899999999999999999


Q ss_pred             HHHhcCcCCChhHHHHHHHhccCCCCCcchhhhh---cCcchHHHHHHHHHh
Q 009395          476 RVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIH---RGFSKSSSCFKNLLC  524 (535)
Q Consensus       476 ~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~---~G~~~~~~~~~~~~~  524 (535)
                      +|++||+..+++++|.+.++|+|||+++||||.+   .|+++++..+..++.
T Consensus       310 ~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~  361 (380)
T KOG1683|consen  310 RCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS  361 (380)
T ss_pred             HHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc
Confidence            9999999999999999999999999999999965   899999999988764

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4.3e-53  Score=425.07  Aligned_cols=268  Identities=26%  Similarity=0.393  Sum_probs=254.4

Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHH-------HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--c-ccccCC
Q 009395          158 MGSGIATALILSNYPVILKEVNEK-------FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--Y-ESFKDV  227 (535)
Q Consensus       158 mG~~iA~~l~~~G~~V~l~d~~~~-------~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~-~~~~~a  227 (535)
                      ||++||..++.+|++|+++|++++       .++++.+++.+.+++.+++|.++.++.+..+++|+++++  . +++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            899999999999999999999995       467788899999999999999999988899999988764  2 568999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHH
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQV  307 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~  307 (535)
                      |+|||||||+.++|+.+|+++.+.+++++|++||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.|++++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~  160 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV  160 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---hhHHHHHHHhchHHH
Q 009395          308 IVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVGFGVA  382 (535)
Q Consensus       308 ~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p---~GPf~~~D~~Gld~~  382 (535)
                      ++.+.++++.+|+.+++++|.|||++||++.++++|++.++++|+ ++++||.+++ ++|||   +|||+++|.+|+|++
T Consensus       161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~  240 (314)
T PRK08269        161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDIL  240 (314)
T ss_pred             HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHH
Confidence            999999999999999999999999999999999999999999885 9999999999 99999   699999999999999


Q ss_pred             HHHHHHHHHhCCC-CCccCccHHHHHHCCCCCccCCceeeeecC
Q 009395          383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDE  425 (535)
Q Consensus       383 ~~~~~~l~~~~~~-~~~~~~~l~~~~~~G~~G~k~g~GFY~y~~  425 (535)
                      .++++.+++.+++ ++.|++++++|+++|++|+|+|+|||+|++
T Consensus       241 ~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~~  284 (314)
T PRK08269        241 YYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYAG  284 (314)
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCCC
Confidence            9999999998888 566889999999999999999999999965

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=6e-53  Score=421.95  Aligned_cols=277  Identities=22%  Similarity=0.299  Sum_probs=247.8

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-c
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S  223 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~  223 (535)
                      ++++||+|||+|.||++||..++.+|++|++||++++.++.+..++.+.+....+.| ++..   ...++++.+++++ .
T Consensus         5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~-~~~~---~~~~~i~~~~~l~~a   80 (321)
T PRK07066          5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQG-LAPG---ASPARLRFVATIEAC   80 (321)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CChh---hHHhhceecCCHHHH
Confidence            457899999999999999999999999999999999999998888888888888777 3332   2345777788884 5


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t  303 (535)
                      +++||+|||||||++++|+++|+++.+.+++++||+||||+++++++++.+.+|+|++|+|||||++.+++||+++++.|
T Consensus        81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T  160 (321)
T PRK07066         81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT  160 (321)
T ss_pred             hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCceEEe-CCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---hhHHHHHHHh
Q 009395          304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV  377 (535)
Q Consensus       304 s~e~~~~~~~l~~~lGk~~i~v-~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p---~GPf~~~D~~  377 (535)
                      ++++++.+.+|++.+||.||++ +|.|||++||++.++++||++++++|+ |+++||++|+ |+|+|   +|||+++|.+
T Consensus       161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~  240 (321)
T PRK07066        161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA  240 (321)
T ss_pred             CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence            9999999999999999999999 599999999999999999999999997 9999999999 99987   9999999999


Q ss_pred             chHH-HHHHHHHHHHhCCCC---CccCccHHHHHH------CCCCCccCCceeeeecC
Q 009395          378 GFGV-AIATGMQFIENFPER---TYKSMIIPIMQE------DKRAGETTRKGFYLYDE  425 (535)
Q Consensus       378 Gld~-~~~~~~~l~~~~~~~---~~~~~~l~~~~~------~G~~G~k~g~GFY~y~~  425 (535)
                      |+|. +.+.++++.+.+.+.   ..++++...|++      ++.+|.++..+||.|.+
T Consensus       241 Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd  298 (321)
T PRK07066        241 GGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALERYRD  298 (321)
T ss_pred             ChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            9997 455556655554321   224557888887      78999999999999864

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.4e-46  Score=381.14  Aligned_cols=277  Identities=31%  Similarity=0.535  Sum_probs=245.8

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  224 (535)
                      +++||+|||+|.||++||..|+++|++|++||++++.++.+.+.+.+......+.+.     ....+++++.+++++ .+
T Consensus         3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~   77 (311)
T PRK06130          3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV   77 (311)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence            478999999999999999999999999999999999988877655443322222111     012234566666665 47


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS  304 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts  304 (535)
                      ++||+||+|||++.+.++++++++.+.++++++|+|++|+++++++++.+.++.+++|+||++|+..++++++++++.++
T Consensus        78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~  157 (311)
T PRK06130         78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS  157 (311)
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence            89999999999999999999999999999999999999999999999988888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCceEEeC-CcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---hhHHHHHHHhc
Q 009395          305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG  378 (535)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p---~GPf~~~D~~G  378 (535)
                      +++++.+.++++.+|+.+++++ +.|||++||++.++++||+.++++|. ++++||.+++ ++|||   +|||+++|.+|
T Consensus       158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G  237 (311)
T PRK06130        158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG  237 (311)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence            9999999999999999999996 78999999999999999999999875 9999999998 99999   79999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCccCccHHHHHHCCCCCccCCceeeeecCCC
Q 009395          379 FGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERR  427 (535)
Q Consensus       379 ld~~~~~~~~l~~~~~~~~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~  427 (535)
                      +|++.++++.+++.+++++.|++++++|+++|++|+|+|+|||+|+++.
T Consensus       238 l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~g~~G~~~g~gfy~y~~~~  286 (311)
T PRK06130        238 LDVHLAVASYLYQDLENRTTPSPLLEEKVEAGELGAKSGQGFYAWPPER  286 (311)
T ss_pred             cchHHHHHHHHHHhcCCcCCCCHHHHHHHHcCCccccCCCcCccCCCCC
Confidence            9999999999999998888899999999999999999999999997643

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.6e-39  Score=328.21  Aligned_cols=264  Identities=24%  Similarity=0.336  Sum_probs=243.8

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  224 (535)
                      ++++|+|||+|.||++||..|+++|++|++||++++.++.+..+++..++..++.|.++..+......++..+++++ .+
T Consensus         1 ~~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~   80 (308)
T PRK06129          1 PMGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV   80 (308)
T ss_pred             CCcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence            36789999999999999999999999999999999999999888888998899999988777778888888888885 57


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS  304 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts  304 (535)
                      ++||+||+|+|++.++++.+++++.+.++++++++|+||+++++++++.+.++.++++.||++|++.++++|+++++.++
T Consensus        81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~  160 (308)
T PRK06129         81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTA  160 (308)
T ss_pred             CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCC
Confidence            99999999999999999999999999999999999999999999999999889999999999999889999999999999


Q ss_pred             HHHHHHHHHHHHhcCCceEEeC-CcccchhhhhHHHHHHHHHHHHHcC-CCHHHHHHHHH-hcCCC---hhHHHHHHHh-
Q 009395          305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMP---MGPFRLADLV-  377 (535)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G-~~~~~ID~a~~-g~G~p---~GPf~~~D~~-  377 (535)
                      +++++.++++++.+|+.+++++ +.+||++||++.++++||+.++++| +|+++||++++ ++|++   +|||++.|.. 
T Consensus       161 ~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~  240 (308)
T PRK06129        161 PATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNA  240 (308)
T ss_pred             HHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccc
Confidence            9999999999999999999996 7899999999999999999999987 49999999999 89988   8999999987 


Q ss_pred             --chHHHHHHHHHHHHhCCCCC-ccCccHHHHHHC
Q 009395          378 --GFGVAIATGMQFIENFPERT-YKSMIIPIMQED  409 (535)
Q Consensus       378 --Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~  409 (535)
                        |++........++..+.+.. .|+|++.+|+++
T Consensus       241 ~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~  275 (308)
T PRK06129        241 PGGVADYAQRYGPMYRRMAAERGQPVPWDGELVAR  275 (308)
T ss_pred             cccHHHHHHHHHHHHHhhccccCCCchhhHHHHHH
Confidence              89999999999998887754 478889888873

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=100.00  E-value=6.5e-38  Score=290.56  Aligned_cols=180  Identities=38%  Similarity=0.648  Sum_probs=161.3

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD  228 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  228 (535)
                      ||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++..+++|.+++.+.+..+++++++++++++.+||
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad   80 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD   80 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHH
Q 009395          229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVI  308 (535)
Q Consensus       229 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~  308 (535)
                      +||||+||++++|+++|++|++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++++|+++++.|+++++
T Consensus        81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~  160 (180)
T PF02737_consen   81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV  160 (180)
T ss_dssp             EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred             eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCceEEeCCc
Q 009395          309 VDLLDIGKKIKKTPIVVGNC  328 (535)
Q Consensus       309 ~~~~~l~~~lGk~~i~v~d~  328 (535)
                      +.+..|++.+||.|++++|+
T Consensus       161 ~~~~~~~~~~gk~pv~v~D~  180 (180)
T PF02737_consen  161 DRVRALLRSLGKTPVVVKDT  180 (180)
T ss_dssp             HHHHHHHHHTT-EEEEEES-
T ss_pred             HHHHHHHHHCCCEEEEecCC
Confidence            99999999999999999773

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=100.00  E-value=7.5e-36  Score=319.03  Aligned_cols=244  Identities=23%  Similarity=0.316  Sum_probs=205.6

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  224 (535)
                      .++||+|||+|+||++||..|+++|++|++||+++++++...+.+..... ..  +.+.... ....++++.+++++ .+
T Consensus         3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~-~~--~~l~~~~-~~~~g~i~~~~~~~ea~   78 (495)
T PRK07531          3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAER-AY--AMLTDAP-LPPEGRLTFCASLAEAV   78 (495)
T ss_pred             CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHH-HH--hhhccch-hhhhhceEeeCCHHHHh
Confidence            36799999999999999999999999999999999988765432221111 11  1111110 01123566677774 68


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS  304 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts  304 (535)
                      ++||+||+|+||+.++|+++++++.+.+++++||+|+||+++++++++.+..+.++++.|||+|++.++++|+++++.|+
T Consensus        79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~  158 (495)
T PRK07531         79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS  158 (495)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCceEEeC-CcccchhhhhHHHHHHHHHHHHHcC-CCHHHHHHHHH-hcCCC---hhHHHHHHHhc
Q 009395          305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMP---MGPFRLADLVG  378 (535)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G-~~~~~ID~a~~-g~G~p---~GPf~~~D~~G  378 (535)
                      +++++.++++++.+|+.+++++ +.+||+.||++.++++||+.|+++| +|+++||++++ ++|++   +|||++.|..|
T Consensus       159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g  238 (495)
T PRK07531        159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG  238 (495)
T ss_pred             HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence            9999999999999999999996 8999999999999999999999987 59999999999 87764   89999999998


Q ss_pred             hH-HHHHHHHHHHHhC
Q 009395          379 FG-VAIATGMQFIENF  393 (535)
Q Consensus       379 ld-~~~~~~~~l~~~~  393 (535)
                      ++ .+.+.++++.+.+
T Consensus       239 ~~~g~~~~~~~~~~~~  254 (495)
T PRK07531        239 GEAGMRHFLAQFGPCL  254 (495)
T ss_pred             cHHHHHHHHHHhchhh
Confidence            54 5556666655544

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=100.00  E-value=7.2e-34  Score=257.93  Aligned_cols=234  Identities=27%  Similarity=0.449  Sum_probs=211.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcccccccCccc-c
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYES-F  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~-~  224 (535)
                      ..||+|+|.|.+|++||..++..||+|.+||+.++++.-+.+.+++.+.++-+.|.+... .+++.+..|+.++++++ +
T Consensus         3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v   82 (313)
T KOG2305|consen    3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV   82 (313)
T ss_pred             ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence            568999999999999999999999999999999999999999888888776665443211 23456678888999854 7


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS  304 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts  304 (535)
                      ++|=.|.||+||++.+|+.+++++++.+.+.+|++|+||++.++.+.+.+.+.++++-.||.||+...|++|++|.+.|+
T Consensus        83 k~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTs  162 (313)
T KOG2305|consen   83 KGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTS  162 (313)
T ss_pred             hhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCC
Confidence            89999999999999999999999999999999999999999999999999899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCceEEeC-CcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---hhHHHHHHHhc
Q 009395          305 PQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLVG  378 (535)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p---~GPf~~~D~~G  378 (535)
                      ++++++.+++.+.+|..|+... +..||.+||+.++++||.-+++..|+ +..|+|.+|. |+|..   .||+|.+.+.-
T Consensus       163 p~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLNA  242 (313)
T KOG2305|consen  163 PDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLNA  242 (313)
T ss_pred             hhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcCc
Confidence            9999999999999999998775 78999999999999999999999997 9999999999 99976   59999987764


Q ss_pred             hH
Q 009395          379 FG  380 (535)
Q Consensus       379 ld  380 (535)
                      -.
T Consensus       243 ~G  244 (313)
T KOG2305|consen  243 EG  244 (313)
T ss_pred             HH
Confidence            33

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.95  E-value=3.8e-27  Score=251.53  Aligned_cols=165  Identities=15%  Similarity=0.103  Sum_probs=151.3

Q ss_pred             hcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395          251 YCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       251 ~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                      ...+++++++..++.+.+..+....+|+|++|+|||+|++.++++|++++..|++++++.+.++++.+||.|++++|.||
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~G  416 (507)
T PRK08268        337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPG  416 (507)
T ss_pred             cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCcc
Confidence            34567777777777777777766678999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHHHHHHHHHHhCCC-CCccCccHHHHH
Q 009395          331 FAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQ  407 (535)
Q Consensus       331 ~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~~  407 (535)
                      |++||++.+++|||++++++|+ +++|||.+|+ |+|||+|||+++|.+|+|.++++++.++..+++ ++.|++++++|+
T Consensus       417 fi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~ll~~~v  496 (507)
T PRK08268        417 FVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYRPSPWLRRRA  496 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCcCHHHHHHH
Confidence            9999999999999999999998 9999999999 999999999999999999999999999999996 566889999999


Q ss_pred             HCCCCCccCCceeee
Q 009395          408 EDKRAGETTRKGFYL  422 (535)
Q Consensus       408 ~~G~~G~k~g~GFY~  422 (535)
                      ++|       ..||.
T Consensus       497 ~~G-------~~~~~  504 (507)
T PRK08268        497 ALG-------LSLRS  504 (507)
T ss_pred             HcC-------CCcCC
Confidence            986       56764

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.92  E-value=1.3e-25  Score=187.32  Aligned_cols=94  Identities=40%  Similarity=0.610  Sum_probs=87.6

Q ss_pred             cchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCCC-ccCccHHHH
Q 009395          330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPERT-YKSMIIPIM  406 (535)
Q Consensus       330 G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~-~~~~~l~~~  406 (535)
                      ||++||++.++++||++++++|+ ||++||.+++ ++|||+|||+++|.+|+|++.++++++++.++++. .|++++++|
T Consensus         1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~m   80 (97)
T PF00725_consen    1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFRPSPLLKEM   80 (97)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGSS-HHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCCchHHHHHH
Confidence            89999999999999999999996 9999999999 89999999999999999999999999999999884 468999999


Q ss_pred             HHCCCCCccCCceeeee
Q 009395          407 QEDKRAGETTRKGFYLY  423 (535)
Q Consensus       407 ~~~G~~G~k~g~GFY~y  423 (535)
                      +++|++|+|+|+|||+|
T Consensus        81 v~~g~~G~k~g~Gfy~Y   97 (97)
T PF00725_consen   81 VEEGRLGRKSGKGFYDY   97 (97)
T ss_dssp             HHTT--BGGGTBSSSBE
T ss_pred             HHCCCCcCcCCCcceeC
Confidence            99999999999999998

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.89  E-value=4e-21  Score=204.76  Aligned_cols=118  Identities=15%  Similarity=0.148  Sum_probs=112.9

Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhH
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGP  370 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GP  370 (535)
                      ..+|++++..|++++++.+.++++.+||.|++++|.|||++||++++++|||++++++|+ +++|||.+|+ ++|||+||
T Consensus       378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP  457 (503)
T TIGR02279       378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP  457 (503)
T ss_pred             CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence            478999999999999999999999999999999999999999999999999999999998 8999999999 99999999


Q ss_pred             HHHHHHhchHHHHHHHHHHHHhCCC-CCccCccHHHHHHCC
Q 009395          371 FRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDK  410 (535)
Q Consensus       371 f~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~G  410 (535)
                      |+|+|.+|+|++++++++|++.+++ ++.|+++|++|+..|
T Consensus       458 ~~~~D~~Gld~~~~~l~~l~~~~~~~~~~p~~~L~~~v~~g  498 (503)
T TIGR02279       458 LAWAAQLGWQRILRVLENLQHHYGEERYRPSSLLRRRALLG  498 (503)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHcCCCcCCcCHHHHHHHHcC
Confidence            9999999999999999999999995 556889999999987

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.77  E-value=1.1e-17  Score=163.52  Aligned_cols=186  Identities=21%  Similarity=0.261  Sum_probs=140.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL-EAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~-~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+|||+|.||.+||.+|.++||+|++||+++++. +.+.           ..|..            ...+..+.+++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~-----------~~Ga~------------~a~s~~eaa~~   57 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA-----------AAGAT------------VAASPAEAAAE   57 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHH-----------HcCCc------------ccCCHHHHHHh
Confidence            489999999999999999999999999999999983 3322           23321            12333477899


Q ss_pred             CCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeeccc-CCCCC-------CC
Q 009395          227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MP  293 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~~-------~~  293 (535)
                      ||+||.|||++.++...++.  .+.+.+++++++++ +||++++   ++++.+.    -.|.+|+ .|++.       +.
T Consensus        58 aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~Gt  132 (286)
T COG2084          58 ADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGT  132 (286)
T ss_pred             CCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCc
Confidence            99999999988887766663  58888899998875 5556665   3444432    2366776 36543       34


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-ccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH-h
Q 009395          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-K  363 (535)
Q Consensus       294 lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~-g  363 (535)
                      |..++.+   +++.+++++++++.+|+.++++++. .|.   ++|+++..    .+.||+.+.+ .|++++.+..+++ +
T Consensus       133 LtimvGG---~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~  209 (286)
T COG2084         133 LTIMVGG---DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGG  209 (286)
T ss_pred             eEEEeCC---CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Confidence            5545555   7999999999999999999999864 443   67888764    3689999987 6999999999998 5


Q ss_pred             c
Q 009395          364 F  364 (535)
Q Consensus       364 ~  364 (535)
                      .
T Consensus       210 ~  210 (286)
T COG2084         210 A  210 (286)
T ss_pred             c
Confidence            3

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.71  E-value=2.4e-16  Score=158.33  Aligned_cols=187  Identities=17%  Similarity=0.296  Sum_probs=135.0

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD  228 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  228 (535)
                      ||+|||+|.||.+||..|+++|++|++||+++++++.+.           +.|..            ..++..+.+++||
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~~------------~~~~~~~~~~~aD   57 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELL-----------AAGAV------------TAETARQVTEQAD   57 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCCc------------ccCCHHHHHhcCC
Confidence            599999999999999999999999999999998876543           22321            1122235678999


Q ss_pred             EEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeecccC-CCC------CCCEEE
Q 009395          229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAH------VMPLLE  296 (535)
Q Consensus       229 lVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~------~~~lve  296 (535)
                      +||+|+|++..++..++.  .+.+.+++++++++ +|+.++.   ++.+.+...    |+||+. |+.      ..+.+.
T Consensus        58 ivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd-~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~  132 (291)
T TIGR01505        58 VIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD-MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS  132 (291)
T ss_pred             EEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence            999999987776655543  35667788888874 5555553   455555321    445443 322      123334


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-ccc---chhhhhHHHH----HHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT-KFG  365 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G---~i~nri~~~~----~~ea~~l~~-~G~~~~~ID~a~~-g~G  365 (535)
                      ++.+  .+++.++.++++++.+|+.++++++ .+|   .++|+++.+.    ++|++.+.+ .|++++++.+++. +.+
T Consensus       133 i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~  209 (291)
T TIGR01505       133 IMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA  209 (291)
T ss_pred             EEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence            5544  2689999999999999999999975 455   4778887754    799999986 6899999999998 544

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.70  E-value=1.9e-15  Score=150.67  Aligned_cols=154  Identities=19%  Similarity=0.231  Sum_probs=120.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +||+|||+|.||+++|..|.++|++|++||++++.++.+.           +.|.++           ..+++.+.+++|
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~~~a   58 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI-----------ERGLVD-----------EASTDLSLLKDC   58 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------cccCCHhHhcCC
Confidence            3799999999999999999999999999999998876543           223221           123344567899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC------------CCCEE
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL  295 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~------------~~~lv  295 (535)
                      |+||+|+|++  ...++++++.+.++++++++ +++++....+........+|+++||+.+..            .+..+
T Consensus        59 DlVilavp~~--~~~~~~~~l~~~l~~~~ii~-d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~  135 (279)
T PRK07417         59 DLVILALPIG--LLLPPSEQLIPALPPEAIVT-DVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPW  135 (279)
T ss_pred             CEEEEcCCHH--HHHHHHHHHHHhCCCCcEEE-eCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence            9999999965  34577899999888888775 455566665555544455799999986432            24566


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      .+++++.++++.++.+.++++.+|..++.++
T Consensus       136 ~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~  166 (279)
T PRK07417        136 VLTPTENTDLNALAIVEELAVSLGSKIYTAD  166 (279)
T ss_pred             EEccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence            7889999999999999999999999998887

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.67  E-value=2.1e-15  Score=151.90  Aligned_cols=188  Identities=18%  Similarity=0.280  Sum_probs=135.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      +++|+|||+|.||.++|..+++.|++|++||++++.++...           +.|.             ..++++ +.++
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~   57 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVI-----------AAGA-------------ETASTAKAVAE   57 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HCCC-------------eecCCHHHHHh
Confidence            35899999999999999999999999999999998866432           1221             123344 3468


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeecccC-CCCC------CC
Q 009395          226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PAHV------MP  293 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~~~------~~  293 (535)
                      +||+||+|+|+...++..++  ..+.+.++++++++ ++|+.++.   ++++.+...    |.||+. |+..      .+
T Consensus        58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g  132 (296)
T PRK11559         58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDG  132 (296)
T ss_pred             cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhC
Confidence            99999999998776655544  34677788889887 45555554   455544321    566654 3221      13


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-cccch---hhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH-h
Q 009395          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-K  363 (535)
Q Consensus       294 lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~i---~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~-g  363 (535)
                      .++++.+.  +++.++.+.++++.+|+.++++++ .+|+.   +|+++.+    .++|++.+.+ .|+++++++++++ +
T Consensus       133 ~l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~  210 (296)
T PRK11559        133 TLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGG  210 (296)
T ss_pred             cEEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            34455442  688999999999999999999974 46664   6776654    4799999987 6899999999987 4


Q ss_pred             cC
Q 009395          364 FG  365 (535)
Q Consensus       364 ~G  365 (535)
                      ++
T Consensus       211 ~~  212 (296)
T PRK11559        211 LA  212 (296)
T ss_pred             cc
Confidence            43

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.64  E-value=1.6e-14  Score=143.21  Aligned_cols=185  Identities=18%  Similarity=0.139  Sum_probs=135.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC----cEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009395          148 KKVAILGGGLMGSGIATALILSNY----PVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-  221 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~----~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  221 (535)
                      +||+|||+|.||.+|+..|+++|+    +|++| |+++++.+.+.           +.|             +...++. 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~   56 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-----------SLG-------------VKTAASNT   56 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-----------HcC-------------CEEeCChH
Confidence            479999999999999999999998    89999 99988765432           122             1122333 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCE-EEEEeC
Q 009395          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRT  300 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~l-veiv~~  300 (535)
                      +.+++||+||.|++  ++...+++.++.+.++++++++|.+++++++.+.+..+.. ++++.+|+.|...... ..++.+
T Consensus        57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~  133 (266)
T PLN02688         57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG  133 (266)
T ss_pred             HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence            45789999999996  4557888888888888888888999999999998877544 7899999888765433 445677


Q ss_pred             CCCCHHHHHHHHHHHHhcCCceEEeCCc-----ccchh--hhhHHHH---HHHHHHHHHcCCCHHHHHHHHH
Q 009395          301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC-----TGFAV--NRMFFPY---TQAAFLLVERGTDLYLIDRAIT  362 (535)
Q Consensus       301 ~~ts~e~~~~~~~l~~~lGk~~i~v~d~-----~G~i~--nri~~~~---~~ea~~l~~~G~~~~~ID~a~~  362 (535)
                      ..++++..+.++++++.+|. ++++++.     -|...  ..+++.+   +.|+  ....|+++++..+++.
T Consensus       134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea--~~~~Gl~~~~a~~~~~  202 (266)
T PLN02688        134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG--GVAAGLPRDVALSLAA  202 (266)
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH--HHHcCCCHHHHHHHHH
Confidence            78899999999999999999 7776531     01100  1112111   2333  3457999999888876

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.64  E-value=1.4e-14  Score=138.92  Aligned_cols=189  Identities=20%  Similarity=0.222  Sum_probs=136.8

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      .+.++|++||+|.||.+|+.+|.++||+|++|||+.++++...           +.|..            ...++.|..
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~-----------~~Ga~------------v~~sPaeVa   89 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ-----------EAGAR------------VANSPAEVA   89 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH-----------Hhchh------------hhCCHHHHH
Confidence            3568999999999999999999999999999999999887654           33421            123455778


Q ss_pred             cCCCEEEEeccCChHHHHHHHHH--HHhhcCCCceeeecCCcCcHH---HHHhhcCC-CCcEEeecccCCCCC------C
Q 009395          225 KDVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYS-KDRIVGAHFFSPAHV------M  292 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~-~~r~ig~h~~~P~~~------~  292 (535)
                      ++||+||.+||....++..++..  +.+.++++......+||+++.   +|++.+.. ..+++-    .|++.      .
T Consensus        90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vD----APVSGg~~~A~~  165 (327)
T KOG0409|consen   90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVD----APVSGGVKGAEE  165 (327)
T ss_pred             hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEe----ccccCCchhhhc
Confidence            99999999999888877776653  344444544332345566553   66665532 234433    35543      2


Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-cc---chhhhhHHHH----HHHHHHHHH-cCCCHHHHHHHHH
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFFPY----TQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G---~i~nri~~~~----~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      ..+.++.+  .+++.++.+.++++.+||+.+.++.. .|   -+.|+|+.+.    +.|++.+.+ .|+|+..+-.++.
T Consensus       166 G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln  242 (327)
T KOG0409|consen  166 GTLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILN  242 (327)
T ss_pred             CeEEEEec--CcHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            34445555  47999999999999999999999853 34   3678887653    689999976 7999999999887

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.63  E-value=2.7e-14  Score=141.32  Aligned_cols=153  Identities=18%  Similarity=0.227  Sum_probs=124.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009395          148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (535)
                      +||+|||+|+||.+|+..|.++|+    +|+++|+++++++.+.+.          .|             +..+++. +
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e   59 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNE   59 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHH
Confidence            379999999999999999999885    699999999887654310          12             1122333 4


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEE-EEeCC
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN  301 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~  301 (535)
                      .+.+||+||.|+++  ....++++++.+.++++.+++|...++++++|.+.++.+.+++..+|+.|+..+..+. +.+++
T Consensus        60 ~~~~aDiIiLavkP--~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~  137 (272)
T PRK12491         60 VANSADILILSIKP--DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNE  137 (272)
T ss_pred             HHhhCCEEEEEeCh--HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCC
Confidence            46899999999984  5678899999988888899999999999999999987666899999999987765554 45788


Q ss_pred             CCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          302 QTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       302 ~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      .++++..+.+..+|..+|+. +.+.
T Consensus       138 ~~~~~~~~~v~~lf~~~G~~-~~~~  161 (272)
T PRK12491        138 MVTEKDIKEVLNIFNIFGQT-EVVN  161 (272)
T ss_pred             CCCHHHHHHHHHHHHcCCCE-EEEc
Confidence            88999999999999999987 4444

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.61  E-value=1.8e-14  Score=149.03  Aligned_cols=171  Identities=21%  Similarity=0.233  Sum_probs=122.8

Q ss_pred             CcceEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          146 RVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       146 ~~~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      .+++|+||| +|.||+++|..|..+|++|++||+++..  .                                  ..+.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~----------------------------------~~~~~  140 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--R----------------------------------AEDIL  140 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--h----------------------------------HHHHH
Confidence            467899999 8999999999999999999999986310  0                                  00235


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcCCCCcEEeecccCCCCCCCEEE--EEeC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHVMPLLE--IVRT  300 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve--iv~~  300 (535)
                      ++||+||+|+|++.  ..++++++.+ +++++||++++|+.  ++..+.+...  .+|+|.||+.++....+..  ++..
T Consensus       141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~  215 (374)
T PRK11199        141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC  215 (374)
T ss_pred             hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence            68999999999764  5788899988 89999999998853  4556665543  3699999998765432221  3445


Q ss_pred             CCCCHHHHHHHHHHHHhcCCceEEeC-Ccccchhhhh--HH--HHHHHHHHHHHcCCCHHHH
Q 009395          301 NQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNRM--FF--PYTQAAFLLVERGTDLYLI  357 (535)
Q Consensus       301 ~~ts~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nri--~~--~~~~ea~~l~~~G~~~~~I  357 (535)
                      +.++++.++.+.++++.+|..++.++ +.+..++..+  +.  ..+.++..+.+.+.+++++
T Consensus       216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~  277 (374)
T PRK11199        216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL  277 (374)
T ss_pred             CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            56788899999999999999999987 3344333222  11  1234555555556665554

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.60  E-value=4.2e-14  Score=141.09  Aligned_cols=190  Identities=15%  Similarity=0.170  Sum_probs=135.8

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          146 RVKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      +.+||+|||+|.||.+|+..|+++|    ++|+++|++++ .++....          +.|             +..+.+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~----------~~g-------------~~~~~~   58 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQ----------KYG-------------VKGTHN   58 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHH----------hcC-------------ceEeCC
Confidence            3568999999999999999999998    78999999754 4433221          011             122233


Q ss_pred             c-ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCC-CCEEEEE
Q 009395          221 Y-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIV  298 (535)
Q Consensus       221 ~-~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-~~lveiv  298 (535)
                      . +.+.+||+||.|||++  ...+++.++.+.+.++++|+|..++++++.+.+.++...++++.||+.|... ..+..++
T Consensus        59 ~~e~~~~aDvVilav~p~--~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~  136 (279)
T PRK07679         59 KKELLTDANILFLAMKPK--DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAIS  136 (279)
T ss_pred             HHHHHhcCCEEEEEeCHH--HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEe
Confidence            3 4468999999999843  4567788888888888899998899999999887765568999999877654 4455566


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCceEEeCCc--c---cchh--hhhHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 009395          299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNC--T---GFAV--NRMFFPYTQAAFL--LVERGTDLYLIDRAIT  362 (535)
Q Consensus       299 ~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~--~---G~i~--nri~~~~~~ea~~--l~~~G~~~~~ID~a~~  362 (535)
                      +++..+++..+.++++++.+|+.. ++.+.  .   |...  .. +...+.|++.  ....|+++++..+++.
T Consensus       137 ~~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa-~~~~~~eal~e~~~~~Gl~~~~a~~~~~  207 (279)
T PRK07679        137 PSKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPA-YIYYVVEAMEKAAKKIGLKEDVAKSLIL  207 (279)
T ss_pred             eCCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            888889999999999999999844 44321  1   1000  01 1223344433  3457899998888775

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.59  E-value=8.3e-14  Score=139.99  Aligned_cols=187  Identities=17%  Similarity=0.184  Sum_probs=127.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      +||+|||+|.||.+||..|+++|++|++||+++++.+...           +.|.             ...++. +.+++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~   57 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALV-----------DKGA-------------TPAASPAQAAAG   57 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCC-------------cccCCHHHHHhc
Confidence            5899999999999999999999999999999999876543           1221             112233 45789


Q ss_pred             CCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHH---HHHhhcC-CCCcEEeecccCC---CCCCCEEEE
Q 009395          227 VDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSP---AHVMPLLEI  297 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P---~~~~~lvei  297 (535)
                      ||+||.|+|++..++..+..  .+.+.++++++++ ++|+.++.   ++++.+. ...+|+...-...   ...+.++.+
T Consensus        58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi-d~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~  136 (296)
T PRK15461         58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI-DMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLL  136 (296)
T ss_pred             CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEE
Confidence            99999999987655544332  3566677888775 55666554   4444332 2233333211111   112345545


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-ccc---hhhhhHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       298 v~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G~---i~nri~~----~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      +.+   +++.++.++++++.+|+.++++++. .|.   ++|+++.    ..+.|++.+.+ .|++++.+-.++.
T Consensus       137 ~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~  207 (296)
T PRK15461        137 AGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS  207 (296)
T ss_pred             ECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            444   7899999999999999999999853 222   4565443    34689998876 6999999888776

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.57  E-value=2.3e-13  Score=134.93  Aligned_cols=189  Identities=18%  Similarity=0.178  Sum_probs=134.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009395          147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (535)
                      +++|+|||+|.||.+++..+.++|   ++|.+||++++..+...+.          .|             +..+++. +
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~   58 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEE----------YG-------------VRAATDNQE   58 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHh----------cC-------------CeecCChHH
Confidence            468999999999999999999999   7899999998876544321          01             1122233 3


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEE-EEEeCC
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL-EIVRTN  301 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lv-eiv~~~  301 (535)
                      .+.+||+||+|+|.  ....++++++.+.+  +++|+|.+++++.+.+...++...+++..||+.|......+ .++++.
T Consensus        59 ~~~~advVil~v~~--~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~  134 (267)
T PRK11880         59 AAQEADVVVLAVKP--QVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA  134 (267)
T ss_pred             HHhcCCEEEEEcCH--HHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence            46789999999974  45678888887766  46778889999999998887666789999999887655444 466888


Q ss_pred             CCCHHHHHHHHHHHHhcCCceEEeCCc-c-cch-hh----hhHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 009395          302 QTSPQVIVDLLDIGKKIKKTPIVVGNC-T-GFA-VN----RMFFPYTQAAFLL-VERGTDLYLIDRAIT  362 (535)
Q Consensus       302 ~ts~e~~~~~~~l~~~lGk~~i~v~d~-~-G~i-~n----ri~~~~~~ea~~l-~~~G~~~~~ID~a~~  362 (535)
                      .++++..+.++.+++.+|..+.+..+. . ... +.    ..++.++...... ...|+++++..+++.
T Consensus       135 ~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~  203 (267)
T PRK11880        135 LVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAA  203 (267)
T ss_pred             CCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            899999999999999999744443221 1 111 11    1222233333333 347899988777665

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.55  E-value=1.7e-13  Score=141.42  Aligned_cols=166  Identities=19%  Similarity=0.206  Sum_probs=119.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||+|.||++||..|.++|++|.+|+++++..+...         ....+..+           ..++++ +.+++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~---------a~~~~~~~-----------~~~~~~~~~~~~   60 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR---------ALGFGVID-----------ELAADLQRAAAE   60 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH---------HhcCCCCc-----------ccccCHHHHhcC
Confidence            4799999999999999999999999999999877543221         01122211           112333 34689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHh-hcCCCceeeecCCcC--cHHHHHhhcCCCCcEEeecccCCCC------------C
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------V  291 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------------~  291 (535)
                      ||+||+|+|++  ...++++++.+ .++++++|++.+|+.  .++.+...++...+|++.||+....            .
T Consensus        61 aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~  138 (359)
T PRK06545         61 ADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE  138 (359)
T ss_pred             CCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence            99999999964  56789999987 478888887655543  2344455445567999999985431            2


Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC-Ccccchhhh
Q 009395          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAVNR  335 (535)
Q Consensus       292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~nr  335 (535)
                      +..+.+++++.++++.++.+.++++.+|..++.+. +.+..++..
T Consensus       139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~  183 (359)
T PRK06545        139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVAL  183 (359)
T ss_pred             CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhH
Confidence            34566888888999999999999999999998886 334444443

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.54  E-value=2.6e-13  Score=135.89  Aligned_cols=185  Identities=15%  Similarity=0.175  Sum_probs=126.8

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD  228 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  228 (535)
                      ||+|||+|.||.+||..|.++|++|++||+++. .+..           .+.|.            ....+..+.+++||
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g~------------~~~~s~~~~~~~ad   57 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLGA------------VSVETARQVTEASD   57 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcCC------------eecCCHHHHHhcCC
Confidence            799999999999999999999999999999874 2221           12221            11122334568999


Q ss_pred             EEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHH---HHHhhc-CCCCcEEeecccCC----CCCCCEEEEE
Q 009395          229 MVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERT-YSKDRIVGAHFFSP----AHVMPLLEIV  298 (535)
Q Consensus       229 lVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~-~~~~r~ig~h~~~P----~~~~~lveiv  298 (535)
                      +||.|||++..+...++.  .+.+.+.++.+++. +||+++.   ++++.+ ....+|+. +|+..    +..+.+..++
T Consensus        58 vVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd-~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~~a~~g~l~~~~  135 (292)
T PRK15059         58 IIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD-MSSISPIETKRFARQVNELGGDYLD-APVSGGEIGAREGTLSIMV  135 (292)
T ss_pred             EEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHHHHhcCcEEEEE
Confidence            999999987666554443  25555677887764 5566655   344443 23345555 34432    1224555555


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCceEEeCCc-ccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       299 ~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      .|   +++.++.++++++.+|+..+++++. .|.   ++|+++..    .+.|++.+.+ .|++++.+-+++.
T Consensus       136 gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~  205 (292)
T PRK15059        136 GG---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALM  205 (292)
T ss_pred             cC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            55   6899999999999999999999863 332   45666543    3789998876 6999999888776

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.54  E-value=1.6e-13  Score=137.55  Aligned_cols=181  Identities=20%  Similarity=0.247  Sum_probs=129.2

Q ss_pred             EEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEE
Q 009395          152 ILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMV  230 (535)
Q Consensus       152 vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV  230 (535)
                      |||+|.||.+||..|+++|++|++||+++++++...           +.|.             ..+++. +.+++||+|
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g~-------------~~~~s~~~~~~~advV   56 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAV-----------AAGA-------------QAAASPAEAAEGADRV   56 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eecCCHHHHHhcCCEE
Confidence            689999999999999999999999999998876543           1221             122233 457899999


Q ss_pred             EEeccCChHHHHHHH---HHHHhhcCCCceeeecCCcCcHHH---HHhhcCCCCcEEeecccC-CCC-------CCCEEE
Q 009395          231 IEAIIENVSLKQQIF---ADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVGAHFFS-PAH-------VMPLLE  296 (535)
Q Consensus       231 I~avpe~~~~k~~v~---~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig~h~~~-P~~-------~~~lve  296 (535)
                      |.|||.+..+ +.++   ..+.+.++++.++++ +||++++.   +++.+..    .|.+|.. |+.       .+.+..
T Consensus        57 il~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~  130 (288)
T TIGR01692        57 ITMLPAGQHV-ISVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTF  130 (288)
T ss_pred             EEeCCChHHH-HHHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEE
Confidence            9999975544 4555   567777888887764 55676653   3333321    2444442 333       245555


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-cccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KFG  365 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~-g~G  365 (535)
                      ++.+   +++.++.++++++.+|+.++++++ ..|.   ++|+++..    .++|++.+.+ .|++++++.+++. +.|
T Consensus       131 ~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~  206 (288)
T TIGR01692       131 MVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG  206 (288)
T ss_pred             EECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence            5555   578899999999999999999986 4454   56666543    3789999986 6899999999988 554

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.53  E-value=5.6e-13  Score=132.71  Aligned_cols=151  Identities=19%  Similarity=0.212  Sum_probs=110.7

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ||+|||+|.||+++|..|.++|+  +|++||++++.++.+.           +.|...            ...+.+++.+
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-----------~~g~~~------------~~~~~~~~~~   58 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-----------ELGLVD------------EIVSFEELKK   58 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-----------HCCCCc------------ccCCHHHHhc
Confidence            79999999999999999999996  7899999998766542           223211            1223334556


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcC--CCCcEEeecccCC------CC------CC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTY--SKDRIVGAHFFSP------AH------VM  292 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~--~~~r~ig~h~~~P------~~------~~  292 (535)
                      ||+||.|+|.+  ...+++.++.+ ++++++|++.+|+.  ..+.+.+.  .+.+|++.||+.+      ..      .+
T Consensus        59 aD~Vilavp~~--~~~~~~~~l~~-l~~~~iv~d~gs~k--~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g  133 (275)
T PRK08507         59 CDVIFLAIPVD--AIIEILPKLLD-IKENTTIIDLGSTK--AKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEG  133 (275)
T ss_pred             CCEEEEeCcHH--HHHHHHHHHhc-cCCCCEEEECccch--HHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCC
Confidence            99999999854  45677888888 88898887755532  22222221  2357999999853      21      24


Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                      ..+.+++.+.++++.++.+.++++.+|..++.++.
T Consensus       134 ~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  168 (275)
T PRK08507        134 KVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA  168 (275)
T ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence            56778888888999999999999999999998873

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.52  E-value=7e-13  Score=130.61  Aligned_cols=156  Identities=18%  Similarity=0.229  Sum_probs=118.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--cc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--YE  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~  222 (535)
                      .++|+|+|+|.||+++|+.+..+|+.|.+++++..  .++.+.           +.|....           .+.+  .+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~-----------~lgv~d~-----------~~~~~~~~   60 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL-----------ELGVIDE-----------LTVAGLAE   60 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh-----------hcCcccc-----------cccchhhh
Confidence            46899999999999999999999998877666544  333221           2332221           1122  35


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcCCCCcEEeecccCCCC------CCCE
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------VMPL  294 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------~~~l  294 (535)
                      .+..+|+||.|||  .....++++++.+.++++++|++.+|+.  +++.+....+...+|+|.||+..++      ....
T Consensus        61 ~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~  138 (279)
T COG0287          61 AAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAV  138 (279)
T ss_pred             hcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCE
Confidence            5788999999998  4566789999999999999999988875  3455555553322899999997662      2466


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       295 veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      +.++|++.++.+.++.+.++++.+|..++.+.
T Consensus       139 ~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~  170 (279)
T COG0287         139 VVLTPSEGTEKEWVEEVKRLWEALGARLVEMD  170 (279)
T ss_pred             EEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence            77889998999999999999999998888886

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.51  E-value=8e-13  Score=139.38  Aligned_cols=154  Identities=19%  Similarity=0.172  Sum_probs=119.7

Q ss_pred             ceEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       148 ~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      +||+||| +|.||+++|..|..+|++|++||++++.......          +.|             +..+++. +.+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~----------~~g-------------v~~~~~~~e~~~   57 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK----------ELG-------------VEYANDNIDAAK   57 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH----------HcC-------------CeeccCHHHHhc
Confidence            4799998 7999999999999999999999999876533211          112             1123333 4578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcCCCCcEEeecccCC----CCCCCEEEEEe
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSP----AHVMPLLEIVR  299 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P----~~~~~lveiv~  299 (535)
                      +||+||.|+|.+  ...++++++.+.+++++++++.+|+  .+.+.+.+.++...+|++.||+..    ...+..+.+++
T Consensus        58 ~aDvVIlavp~~--~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p  135 (437)
T PRK08655         58 DADIVIISVPIN--VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP  135 (437)
T ss_pred             cCCEEEEecCHH--HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence            999999999964  4468889999999999999888774  345566666655568999998753    33466777888


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          300 TNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       300 ~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      ++.++++.++.+.++++.+|..++.++
T Consensus       136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~  162 (437)
T PRK08655        136 TEKRSNPWFDKVKNFLEKEGARVIVTS  162 (437)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            888899999999999999999988876

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.50  E-value=1.3e-13  Score=126.10  Aligned_cols=145  Identities=20%  Similarity=0.231  Sum_probs=100.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      |+||+|||+|.||.+||.+|+++|++|++||+++++.+...           +.|             .....+. +.++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-----------~~g-------------~~~~~s~~e~~~   56 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-----------EAG-------------AEVADSPAEAAE   56 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-----------HTT-------------EEEESSHHHHHH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-----------Hhh-------------hhhhhhhhhHhh
Confidence            57999999999999999999999999999999999887654           222             2233444 4578


Q ss_pred             CCCEEEEeccCChHHHHHHHHH--HHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeecccC-CC-------CCC
Q 009395          226 DVDMVIEAIIENVSLKQQIFAD--LEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS-PA-------HVM  292 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~--l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~-P~-------~~~  292 (535)
                      +||+||.|+|++.+ .++++..  +.+.+.++.+++ ++||.+++   ++++.+..    .|.||.. |+       ..+
T Consensus        57 ~~dvvi~~v~~~~~-v~~v~~~~~i~~~l~~g~iii-d~sT~~p~~~~~~~~~~~~----~g~~~vdapV~Gg~~~a~~g  130 (163)
T PF03446_consen   57 QADVVILCVPDDDA-VEAVLFGENILAGLRPGKIII-DMSTISPETSRELAERLAA----KGVRYVDAPVSGGPPGAEEG  130 (163)
T ss_dssp             HBSEEEE-SSSHHH-HHHHHHCTTHGGGS-TTEEEE-E-SS--HHHHHHHHHHHHH----TTEEEEEEEEESHHHHHHHT
T ss_pred             cccceEeecccchh-hhhhhhhhHHhhccccceEEE-ecCCcchhhhhhhhhhhhh----ccceeeeeeeeccccccccc
Confidence            89999999997655 4567776  888888998886 45556655   34444321    1344442 32       235


Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEE
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV  324 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~  324 (535)
                      .+..++.|   +++.++.++++++.+++..++
T Consensus       131 ~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~  159 (163)
T PF03446_consen  131 TLTIMVGG---DEEAFERVRPLLEAMGKNVYH  159 (163)
T ss_dssp             TEEEEEES----HHHHHHHHHHHHHHEEEEEE
T ss_pred             ceEEEccC---CHHHHHHHHHHHHHHhCCcee
Confidence            67777777   589999999999999998874

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.50  E-value=4.2e-13  Score=130.17  Aligned_cols=190  Identities=16%  Similarity=0.127  Sum_probs=138.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      ++||+|||+|+||.+|+..|.++|    .+|++.+++++..+...++          .|            ....+++.+
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~----------~g------------~~~~~~~~~   58 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAE----------YG------------VVTTTDNQE   58 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHH----------cC------------CcccCcHHH
Confidence            368999999999999999999999    5899999999987633211          11            111222335


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEE-EEeCC
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTN  301 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~  301 (535)
                      .+..+|+||.||.  |....+++.++.+ ..++.+|+|...+++++.+.+.++ ..+++..+|+.|+..+..+. ++.+.
T Consensus        59 ~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~  134 (266)
T COG0345          59 AVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANA  134 (266)
T ss_pred             HHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCc
Confidence            6788999999994  6778899999988 778889999999999999999998 78999999999987755544 55778


Q ss_pred             CCCHHHHHHHHHHHHhcCCceEEeCCcccch--hhhh---HHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 009395          302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFA--VNRM---FFPYTQAAFLL--VERGTDLYLIDRAIT  362 (535)
Q Consensus       302 ~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i--~nri---~~~~~~ea~~l--~~~G~~~~~ID~a~~  362 (535)
                      .++++..+.+..+++.+|+...+-.+.-..+  +.-.   +..++.|++.-  +..|++.++.-++..
T Consensus       135 ~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~  202 (266)
T COG0345         135 NVSEEDKAFVEALLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAA  202 (266)
T ss_pred             cCCHHHHHHHHHHHHhcCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            8999999999999999998655432100000  0000   11234555444  346777766665543

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.49  E-value=1e-12  Score=138.97  Aligned_cols=188  Identities=15%  Similarity=0.160  Sum_probs=130.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----  223 (535)
                      .+|+|||+|.||++||..|+++|++|++||++++..+...+..       ...|.           .+..+.++++    
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~-------~~~g~-----------~i~~~~s~~e~v~~   63 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKA-------KEGNT-----------RVKGYHTLEELVNS   63 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhh-------hhcCC-----------cceecCCHHHHHhc
Confidence            4799999999999999999999999999999999987654310       00121           1223344433    


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHH--HHhhcCCCCcEEeecccC-CCCC-------CC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYSKDRIVGAHFFS-PAHV-------MP  293 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~~~~~r~ig~h~~~-P~~~-------~~  293 (535)
                      +.++|+||.+||... ..++++.++.+.+.++.||++.+++.+.+.  ..+.+.    --|+||+. |++.       ++
T Consensus        64 l~~~d~Iil~v~~~~-~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~  138 (470)
T PTZ00142         64 LKKPRKVILLIKAGE-AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP  138 (470)
T ss_pred             CCCCCEEEEEeCChH-HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC
Confidence            346899999998654 456778899999999998887666554432  222221    12566653 4432       34


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhcCCc------eEEeCC-cccc---hh-hhhHHH---HHHHHHHHHH--cCCCHHHH
Q 009395          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGN-CTGF---AV-NRMFFP---YTQAAFLLVE--RGTDLYLI  357 (535)
Q Consensus       294 lveiv~~~~ts~e~~~~~~~l~~~lGk~------~i~v~d-~~G~---i~-nri~~~---~~~ea~~l~~--~G~~~~~I  357 (535)
                       . +++|.  ++++++.++++++.++..      ..++++ ..|.   ++ |-+.+.   .+.|++.+.+  .|++++++
T Consensus       139 -~-lm~GG--~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l  214 (470)
T PTZ00142        139 -S-LMPGG--NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEEL  214 (470)
T ss_pred             -E-EEEeC--CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHH
Confidence             3 44442  689999999999999987      567775 3343   23 444443   4789999986  68899999


Q ss_pred             HHHHH
Q 009395          358 DRAIT  362 (535)
Q Consensus       358 D~a~~  362 (535)
                      -.+++
T Consensus       215 ~~v~~  219 (470)
T PTZ00142        215 SEVFN  219 (470)
T ss_pred             HHHHH
Confidence            88875

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.47  E-value=3.6e-12  Score=128.25  Aligned_cols=189  Identities=9%  Similarity=0.083  Sum_probs=126.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      +||+|||+|.||.+||..|+++|++|++||+++++++.+.+           .|.....         + ..++ +.+.+
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~-----------~g~~~~~---------s-~~~~~~~~~~   59 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKE-----------DRTTGVA---------N-LRELSQRLSA   59 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCCcccC---------C-HHHHHhhcCC
Confidence            37999999999999999999999999999999998765532           2211000         0 0011 23567


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--HHHhhc-CCCCcEEeecccCCCC--CCCEEEEEeCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERT-YSKDRIVGAHFFSPAH--VMPLLEIVRTN  301 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~-~~~~r~ig~h~~~P~~--~~~lveiv~~~  301 (535)
                      +|+||.|+|.+  ..++++.++.+.++++.++++.+++.+.+  ++.+.+ ....+|+..+...++.  ...+..++.| 
T Consensus        60 ~dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG-  136 (298)
T TIGR00872        60 PRVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG-  136 (298)
T ss_pred             CCEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC-
Confidence            99999999976  55788899999998888887665554332  333333 2233455543332111  1123334444 


Q ss_pred             CCCHHHHHHHHHHHHhcCC---ceEEeCCc-ccc---hhhh-hHHH---HHHHHHHHHHc-C--CCHHHHHHHHH
Q 009395          302 QTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNR-MFFP---YTQAAFLLVER-G--TDLYLIDRAIT  362 (535)
Q Consensus       302 ~ts~e~~~~~~~l~~~lGk---~~i~v~d~-~G~---i~nr-i~~~---~~~ea~~l~~~-G--~~~~~ID~a~~  362 (535)
                        +++.++.++++++.++.   ..+++++. .|.   ++++ +.+.   .+.|++.+++. |  ++++++-++|+
T Consensus       137 --~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~  209 (298)
T TIGR00872       137 --DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR  209 (298)
T ss_pred             --CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence              68899999999999986   46778753 232   2344 3332   36899999875 4  59999999987

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02256 arogenate dehydrogenase

Probab=99.47  E-value=1.5e-12  Score=130.51  Aligned_cols=153  Identities=13%  Similarity=0.064  Sum_probs=112.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c-
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F-  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~-  224 (535)
                      .++|+|||+|.||+++|..+.+.|++|++||+++.. +.+.           +.|.             ...++.++ + 
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~gv-------------~~~~~~~e~~~   90 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELGV-------------SFFRDPDDFCE   90 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcCC-------------eeeCCHHHHhh
Confidence            458999999999999999999999999999998632 1111           1121             11233333 3 


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHH-HhhcCCCceeeecCCc--CcHHHHHhhcCCCCcEEeecccCCCCCC------CEE
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM------PLL  295 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l-~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P~~~~------~lv  295 (535)
                      .+||+||.|+|..  ...+++.++ .+.++++++|++.+|+  .+++.+.+.++...+|++.||+.++...      .-+
T Consensus        91 ~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~  168 (304)
T PLN02256         91 EHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPF  168 (304)
T ss_pred             CCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeE
Confidence            4699999999853  557888888 5678899999988884  4566777776555689999999876532      112


Q ss_pred             EEEeC----CCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          296 EIVRT----NQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       296 eiv~~----~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      .+++.    +.++++.++.+.++++.+|..++.+.
T Consensus       169 ~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~  203 (304)
T PLN02256        169 VYDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS  203 (304)
T ss_pred             EEecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence            22221    56788999999999999999999886

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.46  E-value=3.2e-12  Score=135.22  Aligned_cols=190  Identities=16%  Similarity=0.217  Sum_probs=128.2

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc---
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE---  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---  222 (535)
                      .+.+|+|||+|.||.+||..|+++|++|++|||++++.+...+..       ...|..          .+....+++   
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~-------~~~Ga~----------~~~~a~s~~e~v   67 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KKEGNL----------PLYGFKDPEDFV   67 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-------hhcCCc----------ccccCCCHHHHH
Confidence            356899999999999999999999999999999999887654210       001210          011222332   


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeeccc-CCCC-------
Q 009395          223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH-------  290 (535)
Q Consensus       223 -~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~-------  290 (535)
                       .++.+|+||.|||.+..+ ++++..+.+.+.++.|+++.+ +..+.   ++++.+..    .|+||+ .|++       
T Consensus        68 ~~l~~~dvIi~~v~~~~aV-~~Vi~gl~~~l~~G~iiID~s-T~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~  141 (493)
T PLN02350         68 LSIQKPRSVIILVKAGAPV-DQTIKALSEYMEPGDCIIDGG-NEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGAR  141 (493)
T ss_pred             hcCCCCCEEEEECCCcHHH-HHHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhc
Confidence             234599999999977655 566688888888888887544 44333   33333321    255555 2443       


Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhcCCc------eEEeCCc-ccc---hhhhh-HHH---HHHHHHHHHHc--CCCH
Q 009395          291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT------PIVVGNC-TGF---AVNRM-FFP---YTQAAFLLVER--GTDL  354 (535)
Q Consensus       291 ~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~------~i~v~d~-~G~---i~nri-~~~---~~~ea~~l~~~--G~~~  354 (535)
                      .++  .+++|.  ++++++.++++++.++..      .+++++. .|.   ++|+. .+.   .+.|++.+.+.  |+++
T Consensus       142 ~G~--~im~GG--~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~  217 (493)
T PLN02350        142 NGP--SLMPGG--SFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSN  217 (493)
T ss_pred             CCC--eEEecC--CHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence            244  345553  789999999999999954      7788852 333   34444 333   47899999864  8999


Q ss_pred             HHHHHHHH
Q 009395          355 YLIDRAIT  362 (535)
Q Consensus       355 ~~ID~a~~  362 (535)
                      +++-.++.
T Consensus       218 ~~l~~vf~  225 (493)
T PLN02350        218 EELAEVFA  225 (493)
T ss_pred             HHHHHHHH
Confidence            99998854

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.46  E-value=1.6e-13  Score=153.12  Aligned_cols=102  Identities=19%  Similarity=0.202  Sum_probs=92.2

Q ss_pred             HHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHH
Q 009395          309 VDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVA  382 (535)
Q Consensus       309 ~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~  382 (535)
                      +.+.+++..+++.++.+.+.+|||+||++.+++||+++++++|+  +|+|||.++. |+|||+   |||+++|.+|+|.+
T Consensus       625 ~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v  704 (737)
T TIGR02441       625 SDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKL  704 (737)
T ss_pred             HHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHH
Confidence            34455667778777765678999999999999999999999997  9999999999 999996   99999999999999


Q ss_pred             HHHHHHHHHhCCCCCccCccHHHHHHC-C
Q 009395          383 IATGMQFIENFPERTYKSMIIPIMQED-K  410 (535)
Q Consensus       383 ~~~~~~l~~~~~~~~~~~~~l~~~~~~-G  410 (535)
                      .+.++.++..+++++.|++++.+|+++ |
T Consensus       705 ~~~~~~l~~~~g~~~~p~~lL~~~~~~~g  733 (737)
T TIGR02441       705 VDKMEKYAAAYGVQFTPCQLLLDHAKSPG  733 (737)
T ss_pred             HHHHHHHHHHhCCCcCCCHHHHHHHHhcC
Confidence            999999999999988899999999987 6

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.45  E-value=2.4e-12  Score=130.33  Aligned_cols=155  Identities=15%  Similarity=0.163  Sum_probs=114.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      +++|+|||+|.||.++|..|.++|+  +|++||++++.++.+.           +.|...           ....+. +.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~   63 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-----------ELGLGD-----------RVTTSAAEA   63 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-----------hCCCCc-----------eecCCHHHH
Confidence            5789999999999999999999995  8999999998766542           122210           112223 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH---HHHHhhcCCCCcEEeecccCCCCC---------
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFSPAHV---------  291 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~---~~l~~~~~~~~r~ig~h~~~P~~~---------  291 (535)
                      +++||+||+|+|..  ....+++++.+.+++++++++.+| ...   ..+...++...++++.||+.+...         
T Consensus        64 ~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dvgs-~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~  140 (307)
T PRK07502         64 VKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDVGS-VKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE  140 (307)
T ss_pred             hcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeCcc-chHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence            78999999999864  446788888888888887765444 333   334444444558999999975321         


Q ss_pred             ---CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          292 ---MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       292 ---~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                         +..+.+++...++++.++.+.++++.+|..++.++
T Consensus       141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~  178 (307)
T PRK07502        141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD  178 (307)
T ss_pred             HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence               23456777777889999999999999999998876

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.45  E-value=3.3e-12  Score=134.08  Aligned_cols=198  Identities=14%  Similarity=0.156  Sum_probs=128.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGV  218 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~  218 (535)
                      ++||+|||+|.||.++|..|+++|++|++||+++++++.....        +...+.+.++.            +++..+
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~------------g~l~~~   70 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEG------------GYLRAT   70 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhc------------Cceeee
Confidence            5799999999999999999999999999999999998764321        11111111111            234444


Q ss_pred             cCcccccCCCEEEEeccCC--------hHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCC--CC-cE--E-
Q 009395          219 LDYESFKDVDMVIEAIIEN--------VSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--KD-RI--V-  281 (535)
Q Consensus       219 ~~~~~~~~aDlVI~avpe~--------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~--~~-r~--i-  281 (535)
                      ++   +++||+||.|||.+        ......+++.+.++++++++++. .||+++.   ++...+..  +. ++  - 
T Consensus        71 ~~---~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~-~STv~pgtt~~~~~~l~~~~~~~~~~~~~  146 (415)
T PRK11064         71 TT---PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVIL-ESTSPVGATEQMAEWLAEARPDLTFPQQA  146 (415)
T ss_pred             cc---cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEE-eCCCCCCHHHHHHHHHHHhccCCcccccc
Confidence            43   45899999999964        25556777889999999987754 4454443   33322211  00 00  0 


Q ss_pred             --e--ecc-cCC--CCCC-------CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-cc---chhhhhHH----H
Q 009395          282 --G--AHF-FSP--AHVM-------PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG---FAVNRMFF----P  339 (535)
Q Consensus       282 --g--~h~-~~P--~~~~-------~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G---~i~nri~~----~  339 (535)
                        +  .+. ++|  ...+       ....++.+  .+++..+.++++++.++..++++++. .+   -++++.+.    +
T Consensus       147 g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia  224 (415)
T PRK11064        147 GEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIA  224 (415)
T ss_pred             cCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence              0  001 244  1111       12235544  47899999999999999877777652 22   24455543    4


Q ss_pred             HHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          340 YTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       340 ~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      ++||+..+.+ .|+|+.++-+++.
T Consensus       225 ~~nE~~~lae~~GiD~~~v~~~~~  248 (415)
T PRK11064        225 FANELSLICADQGINVWELIRLAN  248 (415)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHhc
Confidence            5899999987 6999999987764

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.45  E-value=3.8e-12  Score=134.01  Aligned_cols=206  Identities=17%  Similarity=0.176  Sum_probs=131.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHh--hhcccccccCcc-cc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK--TISLLTGVLDYE-SF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~~-~~  224 (535)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+.....    .+.+ +. +....  ..++++.+++++ .+
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~----~e~~-l~-~~~~~~~~~g~l~~~~~~~~~~   74 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPI----YEPG-LD-ELLAKALAAGRLRATTDYEDAI   74 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCC----CCCC-HH-HHHHHhhhcCCeEEECCHHHHH
Confidence            3799999999999999999999999999999999887654211000    0000 00 00000  013455666664 48


Q ss_pred             cCCCEEEEeccCCh--------HHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHH-hhcCC-------CCcEEeecc
Q 009395          225 KDVDMVIEAIIENV--------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIG-ERTYS-------KDRIVGAHF  285 (535)
Q Consensus       225 ~~aDlVI~avpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~-~~~~~-------~~r~ig~h~  285 (535)
                      ++||+||.|||...        .....+...+.+.++++++++. +||+++.   ++. ..+..       ..-.+..+|
T Consensus        75 ~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P  153 (411)
T TIGR03026        75 RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP  153 (411)
T ss_pred             hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence            89999999998653        2456677888888888887764 5566443   332 22211       111233333


Q ss_pred             cC--CCCC----CCEEEEEeCCCCCHHHHHHHHHHHHhcC-CceEEeCCc-cc---chhhhhH----HHHHHHHHHHHH-
Q 009395          286 FS--PAHV----MPLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TG---FAVNRMF----FPYTQAAFLLVE-  349 (535)
Q Consensus       286 ~~--P~~~----~~lveiv~~~~ts~e~~~~~~~l~~~lG-k~~i~v~d~-~G---~i~nri~----~~~~~ea~~l~~-  349 (535)
                      -.  +...    .....++.|  .+++..+.++++++.++ +.++.+++. .+   -++++++    .++++|+..+.+ 
T Consensus       154 e~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~  231 (411)
T TIGR03026       154 EFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEA  231 (411)
T ss_pred             CcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  1110    011134444  37899999999999998 577777652 12   2445555    356899999987 


Q ss_pred             cCCCHHHHHHHHH
Q 009395          350 RGTDLYLIDRAIT  362 (535)
Q Consensus       350 ~G~~~~~ID~a~~  362 (535)
                      .|++++++-.++.
T Consensus       232 ~GiD~~~v~~~~~  244 (411)
T TIGR03026       232 LGIDVYEVIEAAG  244 (411)
T ss_pred             hCCCHHHHHHHhC
Confidence            6999999988876

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.44  E-value=5.9e-12  Score=125.32  Aligned_cols=153  Identities=14%  Similarity=0.072  Sum_probs=118.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      |++|+|||+|.||.+|+..|.++|    ++|++|+++++. .+....           .           ...+..+.+.
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~-----------~-----------~~~~~~~~~~   58 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYD-----------K-----------YPTVELADNE   58 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHH-----------H-----------cCCeEEeCCH
Confidence            468999999999999999999998    789999987532 222110           0           0011222333


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEE-EEe
Q 009395          222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVR  299 (535)
Q Consensus       222 -~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~  299 (535)
                       +.+.+||+||.|+|  +....+++.++.+.++++++|+|.+.++++++|.+.++. .+++.++|+.|+..+..+. +++
T Consensus        59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~  135 (277)
T PRK06928         59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH  135 (277)
T ss_pred             HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence             34689999999998  445678899998888888888999999999999998753 4899999999987655544 446


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCceEE
Q 009395          300 TNQTSPQVIVDLLDIGKKIKKTPIV  324 (535)
Q Consensus       300 ~~~ts~e~~~~~~~l~~~lGk~~i~  324 (535)
                      ++..+++..+.++.+|..+|+...+
T Consensus       136 ~~~~~~~~~~~v~~l~~~~G~~~~v  160 (277)
T PRK06928        136 AETVNEANKSRLEETLSHFSHVMTI  160 (277)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            7788999999999999999986654

>PLN02858 fructose-bisphosphate aldolase

Probab=99.42  E-value=3.4e-12  Score=150.35  Aligned_cols=188  Identities=16%  Similarity=0.126  Sum_probs=134.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      -++|+|||+|.||.+||.+|+++|++|++||+++++.+...           +.|..            ...+..+.+++
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga~------------~~~s~~e~a~~   60 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFC-----------ELGGH------------RCDSPAEAAKD   60 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-----------HcCCe------------ecCCHHHHHhc
Confidence            46899999999999999999999999999999999877653           23321            11223355788


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHhhcCCCceeeecCCcCcHHH---HHhhcCCCCcEEe--eccc-CCCC-------C
Q 009395          227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVG--AHFF-SPAH-------V  291 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig--~h~~-~P~~-------~  291 (535)
                      ||+||.|+|++..++..++  ..+.+.+.++.+++ ++||++++.   +++.+..    .|  .+|. .|+.       .
T Consensus        61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iiv-d~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~~  135 (1378)
T PLN02858         61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVIL-IRSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLLN  135 (1378)
T ss_pred             CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEE-ECCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHhc
Confidence            9999999998876655444  35677777888776 456676654   4433321    13  4444 2433       3


Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEe-CCc-ccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHH
Q 009395          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV-GNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAI  361 (535)
Q Consensus       292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v-~d~-~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~  361 (535)
                      +.++.++.|   +++.++.++++++.+|+..+++ ++. .|.   ++|+++..    .+.||+.+.+ .|++++.+-+++
T Consensus       136 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl  212 (1378)
T PLN02858        136 GKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDII  212 (1378)
T ss_pred             CCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            566767766   6889999999999999988865 642 333   46666543    4789999976 799999999998


Q ss_pred             H-hcC
Q 009395          362 T-KFG  365 (535)
Q Consensus       362 ~-g~G  365 (535)
                      . +.|
T Consensus       213 ~~s~g  217 (1378)
T PLN02858        213 SNAAG  217 (1378)
T ss_pred             hcCCc
Confidence            8 554

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.42  E-value=1.3e-11  Score=124.28  Aligned_cols=182  Identities=16%  Similarity=0.139  Sum_probs=122.7

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc--
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK--  225 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~--  225 (535)
                      +|+|||+|.||.++|..|+++|++|++||+++++.+.+.           +.|.             ....+.++ ++  
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~s~~~~~~~~   57 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAG-----------KLGI-------------TARHSLEELVSKL   57 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHHhC
Confidence            799999999999999999999999999999998766542           1221             12223332 33  


Q ss_pred             -CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc--HHHHHhhcCCCCcEEeecccC-CCCC------CCEE
Q 009395          226 -DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFS-PAHV------MPLL  295 (535)
Q Consensus       226 -~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~-P~~~------~~lv  295 (535)
                       .+|+||.|+|.+.. .++++..+.+.++++.+++..+++.+  ..++.+.+..    .|.+|.. |+..      ....
T Consensus        58 ~~advVi~~vp~~~~-~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~vdapV~G~~~~a~~g~~  132 (299)
T PRK12490         58 EAPRTIWVMVPAGEV-TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE----RGIHYVDCGTSGGVWGLRNGYC  132 (299)
T ss_pred             CCCCEEEEEecCchH-HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH----cCCeEEeCCCCCCHHHHhcCCe
Confidence             37999999997644 45667788888888887765433222  2244444321    1344442 3321      1223


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCC---ceEEeCCc-ccc---hhhhhHH----HHHHHHHHHHH-cC--CCHHHHHHHH
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RG--TDLYLIDRAI  361 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk---~~i~v~d~-~G~---i~nri~~----~~~~ea~~l~~-~G--~~~~~ID~a~  361 (535)
                      .++.|   +++.++.++++++.+|.   ..+++++. .|.   ++|+++.    ..+.|++.+.+ .|  ++++++-+++
T Consensus       133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~  209 (299)
T PRK12490        133 LMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW  209 (299)
T ss_pred             EEecC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence            34445   68899999999999997   67888752 222   4555543    23789999987 56  8999998888


Q ss_pred             H
Q 009395          362 T  362 (535)
Q Consensus       362 ~  362 (535)
                      +
T Consensus       210 ~  210 (299)
T PRK12490        210 R  210 (299)
T ss_pred             c
Confidence            7

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.41  E-value=2.1e-13  Score=113.45  Aligned_cols=68  Identities=28%  Similarity=0.370  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCC
Q 009395          461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQG  529 (535)
Q Consensus       461 ~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~  529 (535)
                      ||+||++.+++|||++++++|++ +++|||.+++.|+|||++|++++|.+|+|++.++++.+.+.+++.
T Consensus         2 Fi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~   69 (97)
T PF00725_consen    2 FIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDR   69 (97)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCC
Confidence            68999999999999999999998 999999999999999999999999999999999999999988876

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.40  E-value=2e-11  Score=123.12  Aligned_cols=183  Identities=18%  Similarity=0.176  Sum_probs=123.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc-
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK-  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-  225 (535)
                      ++|+|||+|.||.+||..|+++|++|++||+++++.+...           +.|.             ...++.++ ++ 
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~-----------~~g~-------------~~~~~~~e~~~~   56 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALA-----------EEGA-------------TGADSLEELVAK   56 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HCCC-------------eecCCHHHHHhh
Confidence            3799999999999999999999999999999998876542           2221             12223322 22 


Q ss_pred             --CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--HHHhhcCCCCcEEeeccc-CCCCC------CCE
Q 009395          226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV------MPL  294 (535)
Q Consensus       226 --~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~-~P~~~------~~l  294 (535)
                        ++|+||.|+|.+..+ .+++..+.+.++++.++++.+++.+..  ++.+.+..    .|.+|. .|+..      ..+
T Consensus        57 ~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~  131 (301)
T PRK09599         57 LPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY  131 (301)
T ss_pred             cCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC
Confidence              479999999976443 566778888888888776544433322  34443321    144443 23321      123


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcCC----ceEEeCCc-ccc---hhhhhH-HH---HHHHHHHHHH---cCCCHHHHHH
Q 009395          295 LEIVRTNQTSPQVIVDLLDIGKKIKK----TPIVVGNC-TGF---AVNRMF-FP---YTQAAFLLVE---RGTDLYLIDR  359 (535)
Q Consensus       295 veiv~~~~ts~e~~~~~~~l~~~lGk----~~i~v~d~-~G~---i~nri~-~~---~~~ea~~l~~---~G~~~~~ID~  359 (535)
                      . ++.+  .+++.++.++++++.+++    ..+++++. .|.   ++|+.+ +.   .+.|++.+.+   .|++++++-+
T Consensus       132 ~-~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~  208 (301)
T PRK09599        132 C-LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAE  208 (301)
T ss_pred             e-EEec--CCHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            3 4333  278999999999999998    78888863 232   344443 33   3689999986   5689999999


Q ss_pred             HHH
Q 009395          360 AIT  362 (535)
Q Consensus       360 a~~  362 (535)
                      +++
T Consensus       209 ~~~  211 (301)
T PRK09599        209 VWR  211 (301)
T ss_pred             HHh
Confidence            987

>PRK07680 late competence protein ComER; Validated

Probab=99.39  E-value=2.8e-11  Score=120.43  Aligned_cols=151  Identities=13%  Similarity=0.058  Sum_probs=112.2

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          149 KVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      +|+|||+|.||.+++..|.++|+    +|++||++++..+...+.          .            ..+..+.+. +.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~----------~------------~g~~~~~~~~~~   59 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER----------Y------------PGIHVAKTIEEV   59 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH----------c------------CCeEEECCHHHH
Confidence            69999999999999999999994    799999998876543210          0            012223333 44


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCC-CCEEEEEeCCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-MPLLEIVRTNQ  302 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-~~lveiv~~~~  302 (535)
                      +.+||+||.|+|  +....++++++.++++++++|++.+++++++.+...++  .+++..+|..|... ....-++.++.
T Consensus        60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~  135 (273)
T PRK07680         60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR  135 (273)
T ss_pred             HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence            789999999997  44567888889888888888889999899999988764  35677777655322 22333456767


Q ss_pred             CCHHHHHHHHHHHHhcCCceEEeC
Q 009395          303 TSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       303 ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      .+++..+.+.+++..+|. ++.+.
T Consensus       136 ~~~~~~~~~~~ll~~~G~-~~~i~  158 (273)
T PRK07680        136 CSEEDQQKLERLFSNIST-PLVIE  158 (273)
T ss_pred             CCHHHHHHHHHHHHcCCC-EEEEC
Confidence            788889999999999995 45554

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.39  E-value=3.5e-11  Score=122.38  Aligned_cols=205  Identities=16%  Similarity=0.100  Sum_probs=134.8

Q ss_pred             hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEeccCC
Q 009395          159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIEN  237 (535)
Q Consensus       159 G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVI~avpe~  237 (535)
                      |.+||..|+++|++|++||++++.++...      .+.....|             ++.+++. +.+++||+||.|+|..
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~------~~~l~~~G-------------i~~asd~~eaa~~ADvVIlaVP~~   92 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL------WKKVEDAG-------------VKVVSDDAEAAKHGEIHILFTPFG   92 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHH------HHHHHHCC-------------CEEeCCHHHHHhCCCEEEEECCCc
Confidence            78999999999999999999988654211      11111222             2333333 5578999999999965


Q ss_pred             hHHHHHHHHHHHhhcCCCceeeecCCcCcHHH----HHhhcCCCCcEEeecccCCCCC----CCEEEEEeCC------CC
Q 009395          238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNL----IGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTN------QT  303 (535)
Q Consensus       238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~----l~~~~~~~~r~ig~h~~~P~~~----~~lveiv~~~------~t  303 (535)
                      . ..++++..+.+.++++++|++ +|+.++..    +.+.+..+.+.+|.||++|...    ..-++++.+.      ..
T Consensus        93 ~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~  170 (342)
T PRK12557         93 K-KTVEIAKNILPHLPENAVICN-TCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA  170 (342)
T ss_pred             H-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence            4 467888899999999988774 55555543    3345544456778888776532    2223445443      33


Q ss_pred             CHHHHHHHHHHHHhcCCceEEeCCcccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHH-HhcCCChhHHHHH
Q 009395          304 SPQVIVDLLDIGKKIKKTPIVVGNCTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAI-TKFGMPMGPFRLA  374 (535)
Q Consensus       304 s~e~~~~~~~l~~~lGk~~i~v~d~~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~-~g~G~p~GPf~~~  374 (535)
                      +++.++.++++++.+|+.+++++...|.   ..|+++.+    ...|++.+.+ .|.+|.+.-+-+ ..  --.|--.++
T Consensus       171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~--~~~~~a~l~  248 (342)
T PRK12557        171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILM--TLQTMASLV  248 (342)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH--HHHHHHHHH
Confidence            8899999999999999988888743332   24555543    3678888876 456665544332 21  113666777


Q ss_pred             HHhchHHHHHHH
Q 009395          375 DLVGFGVAIATG  386 (535)
Q Consensus       375 D~~Gld~~~~~~  386 (535)
                      -..|+|.+.+.+
T Consensus       249 ~~~~~~~~~~~~  260 (342)
T PRK12557        249 ETSGVDGLLKAL  260 (342)
T ss_pred             HHhChHHHHHhc
Confidence            777777766654

>PLN02858 fructose-bisphosphate aldolase

Probab=99.39  E-value=7.6e-12  Score=147.44  Aligned_cols=191  Identities=20%  Similarity=0.234  Sum_probs=132.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      ..++|+|||+|.||.+||..|+++|++|++||+++++.+...           +.|.            ....+..+.++
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~Ga------------~~~~s~~e~~~  379 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE-----------NAGG------------LAGNSPAEVAK  379 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC------------eecCCHHHHHh
Confidence            347899999999999999999999999999999998876542           2221            11122235578


Q ss_pred             CCCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHHH---HHhhcCCCCcEEeecccC-CCC-------CC
Q 009395          226 DVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLNL---IGERTYSKDRIVGAHFFS-PAH-------VM  292 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~~---l~~~~~~~~r~ig~h~~~-P~~-------~~  292 (535)
                      +||+||.|||.+.+++..++.  .+.+.+.++.+++ ++||+++..   +++.+..  .-.|.+|.. |+.       .+
T Consensus       380 ~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV-d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~G  456 (1378)
T PLN02858        380 DVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV-LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAMG  456 (1378)
T ss_pred             cCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhcC
Confidence            999999999976665444433  3566677888776 456666653   4443321  013555542 432       24


Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc--c---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G--~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      .+..++.|   +++.++.++++++.+|+..+++...+|  .   ++|+++..    .++|++.+.+ .|++++.+-+++.
T Consensus       457 ~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~  533 (1378)
T PLN02858        457 TLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIIS  533 (1378)
T ss_pred             CceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            56666666   578999999999999998877543233  2   46666543    4789998876 7999999988887


Q ss_pred             -hcC
Q 009395          363 -KFG  365 (535)
Q Consensus       363 -g~G  365 (535)
                       +.|
T Consensus       534 ~s~g  537 (1378)
T PLN02858        534 NAGG  537 (1378)
T ss_pred             hhcc
Confidence             544

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.38  E-value=1.6e-11  Score=123.27  Aligned_cols=186  Identities=17%  Similarity=0.098  Sum_probs=128.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      -++|+|||.|.||.++|..|..+|++|++++++.++.....          .+.|             +...+..+.++.
T Consensus        17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A----------~~~G-------------~~~~s~~eaa~~   73 (330)
T PRK05479         17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKA----------EADG-------------FEVLTVAEAAKW   73 (330)
T ss_pred             CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHH----------HHCC-------------CeeCCHHHHHhc
Confidence            36899999999999999999999999999888754332111          0112             112222355789


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC-------CCC-EEEE
Q 009395          227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-------VMP-LLEI  297 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~-------~~~-lvei  297 (535)
                      ||+|+.++|+...  ..++ +++.+.++++++| +.++++++..+....+...+++..+|..|.+       .+. ..-+
T Consensus        74 ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l  150 (330)
T PRK05479         74 ADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCL  150 (330)
T ss_pred             CCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEE
Confidence            9999999996543  6777 7899999999988 7889999988776665566799999999987       322 2233


Q ss_pred             E-eCCCCCHHHHHHHHHHHHhcCCceE-----EeCC-c-ccc-----hhhhhHHHHHHHHHHHH-HcCCCHHHHH
Q 009395          298 V-RTNQTSPQVIVDLLDIGKKIKKTPI-----VVGN-C-TGF-----AVNRMFFPYTQAAFLLV-ERGTDLYLID  358 (535)
Q Consensus       298 v-~~~~ts~e~~~~~~~l~~~lGk~~i-----~v~d-~-~G~-----i~nri~~~~~~ea~~l~-~~G~~~~~ID  358 (535)
                      + .+...+.+..+.+..++..+|..+.     ...+ . ...     ++..-+..++..++..+ +.|++|+..-
T Consensus       151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay  225 (330)
T PRK05479        151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY  225 (330)
T ss_pred             EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            4 4566778999999999999998865     2221 1 111     12222334555665554 5677776543

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.37  E-value=7e-13  Score=121.59  Aligned_cols=73  Identities=22%  Similarity=0.282  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCCCC
Q 009395          459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGRNH  532 (535)
Q Consensus       459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~  532 (535)
                      ..||+||++.|+++||+++++.|.+ +-+|||.+|.+|.||||||+.+.||+|||++..+|..|.+.++.+..|
T Consensus       199 pGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPMGPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f  271 (298)
T KOG2304|consen  199 PGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPMGPFELADYVGLDTCKFVMDGWHEGYPEDSLF  271 (298)
T ss_pred             CchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCCChHHHHHHhhHHHHHHHHHHHHhcCCccccc
Confidence            3599999999999999999999999 999999999999999999999999999999999999999998776655

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.36  E-value=5.7e-11  Score=119.47  Aligned_cols=202  Identities=14%  Similarity=0.079  Sum_probs=138.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|+|||+|+||.++|..|..+|++|+++++. .+..+.+.           +.|             +...+..+.+++
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~   59 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ   59 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence            57999999999999999999999998876554 33333221           112             112233345789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCC-------CC-EEEEE
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV-------MP-LLEIV  298 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~-------~~-lveiv  298 (535)
                      ||+|+.++|+... ...+++++.+.++++. ++|...++++..+...++...+++.++|+.|.+.       +. ..-++
T Consensus        60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~  137 (314)
T TIGR00465        60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI  137 (314)
T ss_pred             CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence            9999999996533 4566778888888776 6688999999998887765568999999999873       43 33454


Q ss_pred             -eCCCCCHHHHHHHHHHHHhcCCc-------eE--EeC-Ccccc--hhhhhHHHH---HHHHHHHHHcCCCHHHHHHHHH
Q 009395          299 -RTNQTSPQVIVDLLDIGKKIKKT-------PI--VVG-NCTGF--AVNRMFFPY---TQAAFLLVERGTDLYLIDRAIT  362 (535)
Q Consensus       299 -~~~~ts~e~~~~~~~l~~~lGk~-------~i--~v~-d~~G~--i~nri~~~~---~~ea~~l~~~G~~~~~ID~a~~  362 (535)
                       .+...+.+..+.+..+++.+|..       .+  .+. |--+.  .+.-...++   +.|++  ++.|++++.--....
T Consensus       138 a~~~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~eal--v~~G~~~e~A~~~~~  215 (314)
T TIGR00465       138 AVEQDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTL--VEAGYQPELAYFETV  215 (314)
T ss_pred             EecCCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHH--HHcCCCHHHHHHHHH
Confidence             67778899999999999999988       31  221 11111  111111122   23444  788998888766554


Q ss_pred             -hcCCChhHHHHHHHhchH
Q 009395          363 -KFGMPMGPFRLADLVGFG  380 (535)
Q Consensus       363 -g~G~p~GPf~~~D~~Gld  380 (535)
                       -+   .|-.+++-.-|+.
T Consensus       216 ~~~---~g~~~l~~e~g~~  231 (314)
T TIGR00465       216 HEL---KLIVDLIYEGGIT  231 (314)
T ss_pred             HHH---HHHHHHHHHhcHH
Confidence             22   5777777777774

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.35  E-value=3.8e-11  Score=122.61  Aligned_cols=197  Identities=16%  Similarity=0.148  Sum_probs=121.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      |+||+|||+|.||+.+|..|+++|++|++||++++.++........   .....+ .      .....+..+++.+ .++
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~-~------~~~~~~~~~~~~~~~~~   70 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADREN---PRYLPG-I------KLPDNLRATTDLAEALA   70 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcc---cccCCC-C------cCCCCeEEeCCHHHHHh
Confidence            3689999999999999999999999999999999887655421000   000000 0      0001233344543 567


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH-------HHHhhcCCCCcEEeecccCCCC-------C
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-------LIGERTYSKDRIVGAHFFSPAH-------V  291 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-------~l~~~~~~~~r~ig~h~~~P~~-------~  291 (535)
                      +||+||.|+|.  .....++.++.+.+++++++++.++++.++       .+.+..+.....  .....|..       .
T Consensus        71 ~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~~~P~~~~~~~~g~  146 (325)
T PRK00094         71 DADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVLSGPSFAKEVARGL  146 (325)
T ss_pred             CCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEEECccHHHHHHcCC
Confidence            99999999986  356788889999888899888777665542       223322210011  11112321       1


Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccch---------------------hhhhHH----HHHHHHHH
Q 009395          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFA---------------------VNRMFF----PYTQAAFL  346 (535)
Q Consensus       292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i---------------------~nri~~----~~~~ea~~  346 (535)
                      ..++.+ .+  .+.+.++.+.++++..|..+....|..|..                     .++.+.    ..++|+..
T Consensus       147 ~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~  223 (325)
T PRK00094        147 PTAVVI-AS--TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITR  223 (325)
T ss_pred             CcEEEE-Ee--CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence            123333 32  368889999999999998777766543311                     222222    33677777


Q ss_pred             HHH-cCCCHHHHHHH
Q 009395          347 LVE-RGTDLYLIDRA  360 (535)
Q Consensus       347 l~~-~G~~~~~ID~a  360 (535)
                      +.+ .|++++.+...
T Consensus       224 la~~~G~d~~~~~~~  238 (325)
T PRK00094        224 LGVALGANPETFLGL  238 (325)
T ss_pred             HHHHhCCChhhhhcc
Confidence            765 57776666543

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.35  E-value=1.5e-11  Score=125.66  Aligned_cols=138  Identities=12%  Similarity=0.081  Sum_probs=103.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      ++|+|||+ |.||+++|..|.+. |++|+.+|++.+..                                  ....+.+.
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~----------------------------------~~~~~~v~   50 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGS----------------------------------LDPATLLQ   50 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcccc----------------------------------CCHHHHhc
Confidence            58999999 99999999999864 89999999852110                                  11124478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhh---cCCCceeeecCCcCc--HHHHHhhcCCCCcEEeecccCCCCC-----CCEE
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKY---CPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPLL  295 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~---~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~~-----~~lv  295 (535)
                      +||+||.|+|.  ....++++++.++   ++++++|++.+|+..  ++.+   .....+|+|.||+..++.     +..+
T Consensus        51 ~aDlVilavPv--~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s~lf~g~~~  125 (370)
T PRK08818         51 RADVLIFSAPI--RHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKSPTLKGRVM  125 (370)
T ss_pred             CCCEEEEeCCH--HHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCCcccCCCeE
Confidence            99999999994  4667889998876   689999988888762  2332   233347999999986643     3445


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      .+++.  ..++.++.++++++.+|..++.+.
T Consensus       126 iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~  154 (370)
T PRK08818        126 VVCEA--RLQHWSPWVQSLCSALQAECVYAT  154 (370)
T ss_pred             EEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence            56665  344557889999999999988886

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.34  E-value=6.2e-11  Score=116.92  Aligned_cols=181  Identities=13%  Similarity=0.093  Sum_probs=122.3

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          149 KVAILGGGLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      ||+|||+|.||.+|+..|.++|++   +.++|+++++.+...+.                      .......++. +.+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~----------------------~~~~~~~~~~~~~~   59 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAER----------------------FPKVRIAKDNQAVV   59 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHH----------------------cCCceEeCCHHHHH
Confidence            799999999999999999999864   57899998876543311                      0011222333 346


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS  304 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts  304 (535)
                      .+||+||.|+|+  +...+++.++.  +.++.+++|..++++++.+...++...+++..||+.|.....-+..+...   
T Consensus        60 ~~aDvVilav~p--~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~---  132 (258)
T PRK06476         60 DRSDVVFLAVRP--QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP---  132 (258)
T ss_pred             HhCCEEEEEeCH--HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence            789999999983  45567777662  45777888888999999999988665678889998876543333333221   


Q ss_pred             HHHHHHHHHHHHhcCCceEEeCC--cccc-----hhhhhHHHHHHHHHHHH-HcCCCHHHHHHHHH
Q 009395          305 PQVIVDLLDIGKKIKKTPIVVGN--CTGF-----AVNRMFFPYTQAAFLLV-ERGTDLYLIDRAIT  362 (535)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~i~v~d--~~G~-----i~nri~~~~~~ea~~l~-~~G~~~~~ID~a~~  362 (535)
                         .+.++++++.+|..+.+..+  ...+     .... ++.++.++..+. ..|+++++..+++.
T Consensus       133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~-~~~~~~~~~~~~~~~Gl~~~~a~~~~~  194 (258)
T PRK06476        133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT-YFGILETATGWLEEQGLKRQKARAYLA  194 (258)
T ss_pred             ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence               25788999999987764432  1111     1111 123445555554 57899888777664

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.34  E-value=1.5e-11  Score=127.65  Aligned_cols=198  Identities=16%  Similarity=0.218  Sum_probs=120.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      +||+|||+|.||.++|..++. |++|++||+++++++.+.+.+...++..++.      .......+++.+++. +.+.+
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~------~l~~~~~~l~~t~~~~~~~~~   73 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQ------FLQSDKIHFNATLDKNEAYRD   73 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH------HHHhCCCcEEEecchhhhhcC
Confidence            379999999999999988875 9999999999999987765332211111110      000111244445554 45689


Q ss_pred             CCEEEEeccCCh---------HHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeecccCCCCC--C
Q 009395          227 VDMVIEAIIENV---------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAHV--M  292 (535)
Q Consensus       227 aDlVI~avpe~~---------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~P~~~--~  292 (535)
                      ||+||+|||++.         ....++++.+.+ ++++.+++ ..||+++.   ++...+.  +.  ++.| +|...  +
T Consensus        74 ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV-~~STv~pgtt~~l~~~~~--~~--~v~~-~PE~l~~G  146 (388)
T PRK15057         74 ADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMV-IKSTVPVGFTAAMHKKYR--TE--NIIF-SPEFLREG  146 (388)
T ss_pred             CCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEE-EeeecCCchHHHHHHHhh--cC--cEEE-CcccccCC
Confidence            999999999763         334566677776 57777665 45666654   3333221  11  2333 44322  1


Q ss_pred             CE--------EEEEeCCCCCHHHHHHHHHHHHh--cCCc-eEEeCCc-ccc---hhhhhHH----HHHHHHHHHHH-cCC
Q 009395          293 PL--------LEIVRTNQTSPQVIVDLLDIGKK--IKKT-PIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-RGT  352 (535)
Q Consensus       293 ~l--------veiv~~~~ts~e~~~~~~~l~~~--lGk~-~i~v~d~-~G~---i~nri~~----~~~~ea~~l~~-~G~  352 (535)
                      .+        ..++.+   +++..+.+.+++..  ++.. ++++.+. .+.   ++++++.    +++||...+.+ .|+
T Consensus       147 ~a~~d~~~p~rvv~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~Gi  223 (388)
T PRK15057        147 KALYDNLHPSRIVIGE---RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGL  223 (388)
T ss_pred             cccccccCCCEEEEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            12        223333   34566777777754  5543 3345542 222   3455543    46899999986 699


Q ss_pred             CHHHHHHHHH
Q 009395          353 DLYLIDRAIT  362 (535)
Q Consensus       353 ~~~~ID~a~~  362 (535)
                      |++++-+++.
T Consensus       224 D~~eV~~a~~  233 (388)
T PRK15057        224 NTRQIIEGVC  233 (388)
T ss_pred             CHHHHHHHhc
Confidence            9999999884

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.34  E-value=2.1e-12  Score=122.34  Aligned_cols=98  Identities=23%  Similarity=0.263  Sum_probs=90.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||.++++.+|.+|+++|+.++ |                                   
T Consensus       191 ~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~-~-----------------------------------  234 (290)
T KOG1680|consen  191 MILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNS-P-----------------------------------  234 (290)
T ss_pred             HHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5799999999999999999999999999999999999999973 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .++.+.|+.++.+.+.++.+++..|...|...+.+++.++++.+|.+||++++.
T Consensus       235 ~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~  288 (290)
T KOG1680|consen  235 LVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS  288 (290)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence            256678999999999999999999999999999999999999999998887653

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.34  E-value=2.2e-12  Score=143.90  Aligned_cols=88  Identities=22%  Similarity=0.283  Sum_probs=82.9

Q ss_pred             CcccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccC
Q 009395          327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS  400 (535)
Q Consensus       327 d~~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~  400 (535)
                      ..+||++||++.++++||++++++|+  +++|||.+|+ |+|||+   |||+++|.+|+|.+.++++.++..+++++.|+
T Consensus       613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~p~  692 (708)
T PRK11154        613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFTPC  692 (708)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccCCC
Confidence            36899999999999999999999996  9999999999 999997   99999999999999999999999999988899


Q ss_pred             ccHHHHHHCCCCCccCCceee
Q 009395          401 MIIPIMQEDKRAGETTRKGFY  421 (535)
Q Consensus       401 ~~l~~~~~~G~~G~k~g~GFY  421 (535)
                      +++.+|+++|       ++||
T Consensus       693 ~~l~~~~~~~-------~~f~  706 (708)
T PRK11154        693 ERLVEMAERG-------ESFY  706 (708)
T ss_pred             HHHHHHHHcC-------CCCC
Confidence            9999999986       6686

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.34  E-value=6e-11  Score=116.99  Aligned_cols=145  Identities=19%  Similarity=0.203  Sum_probs=112.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      +||+|||+|+||++|+..+.++|.    +++++|++++..                 +            .....++.+.
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-----------------~------------~~~~~~~~~~   54 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-----------------P------------FVYLQSNEEL   54 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-----------------C------------eEEeCChHHH
Confidence            479999999999999999999873    499999886542                 0            0011222244


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCC-EEEEEeCCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQ  302 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~~~  302 (535)
                      +.+||+||.|+|  +....+++.++.++++++ +++|..++++++.+...++...+++..+|+.|..... .+.++++..
T Consensus        55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~  131 (260)
T PTZ00431         55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN  131 (260)
T ss_pred             HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence            678999999997  556789999998877754 5678899999999998876555688899988876644 445667778


Q ss_pred             CCHHHHHHHHHHHHhcCCceEE
Q 009395          303 TSPQVIVDLLDIGKKIKKTPIV  324 (535)
Q Consensus       303 ts~e~~~~~~~l~~~lGk~~i~  324 (535)
                      ++++..+.+..+++.+|....+
T Consensus       132 ~~~~~~~~v~~l~~~~G~~~~v  153 (260)
T PTZ00431        132 VDSTDKKKVIDIFSACGIIQEI  153 (260)
T ss_pred             CCHHHHHHHHHHHHhCCcEEEE
Confidence            8999999999999999986654

>PLN02600 enoyl-CoA hydratase

Probab=99.34  E-value=3.6e-12  Score=124.97  Aligned_cols=97  Identities=21%  Similarity=0.306  Sum_probs=87.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.++++++++.+ |                                   
T Consensus       152 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~-p-----------------------------------  195 (251)
T PLN02600        152 LIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKG-P-----------------------------------  195 (251)
T ss_pred             HHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus       196 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~  248 (251)
T PLN02600        196 LAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY  248 (251)
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence            26667899999888888999999999999999999999999999999987653

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=99.33  E-value=4.2e-12  Score=124.78  Aligned_cols=98  Identities=18%  Similarity=0.232  Sum_probs=88.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  199 (255)
T PRK08150        156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNA-P-----------------------------------  199 (255)
T ss_pred             HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.....+++++++.|.+.+..++.|+|+++++.+|++||++++.
T Consensus       200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~  253 (255)
T PRK08150        200 LTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVK  253 (255)
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence            256678899988877889999999999999999999999999999999987763

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.33  E-value=3.1e-11  Score=127.69  Aligned_cols=190  Identities=15%  Similarity=0.145  Sum_probs=125.4

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc----cc
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE----SF  224 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~~  224 (535)
                      +|+|||+|.||.+||..|+++|++|++||+++++.+.+.+.        ...|.           .+....+++    .+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~--------~~~g~-----------~~~~~~s~~e~v~~l   61 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAE--------HAKGK-----------KIVGAYSIEEFVQSL   61 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh--------ccCCC-----------CceecCCHHHHHhhc
Confidence            48999999999999999999999999999999988765421        00010           011122222    34


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHH--HHhhc-CCCCcEEeecccCCC---CCCCEEEEE
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERT-YSKDRIVGAHFFSPA---HVMPLLEIV  298 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~-~~~~r~ig~h~~~P~---~~~~lveiv  298 (535)
                      +.+|+||.|||.+.. ..+++.++.+.+.++.||++.+++.+.+.  ..+.+ ....+|+++.....+   ..++  .++
T Consensus        62 ~~~dvIil~v~~~~~-v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~--~im  138 (467)
T TIGR00873        62 ERPRKIMLMVKAGAP-VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP--SIM  138 (467)
T ss_pred             CCCCEEEEECCCcHH-HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC--cCC
Confidence            679999999997654 46788889999999998877665544432  22223 222334443222111   1233  344


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCce------EEeCCc-ccc---hhh-hhHHH---HHHHHHHHHH--cCCCHHHHHHHHH
Q 009395          299 RTNQTSPQVIVDLLDIGKKIKKTP------IVVGNC-TGF---AVN-RMFFP---YTQAAFLLVE--RGTDLYLIDRAIT  362 (535)
Q Consensus       299 ~~~~ts~e~~~~~~~l~~~lGk~~------i~v~d~-~G~---i~n-ri~~~---~~~ea~~l~~--~G~~~~~ID~a~~  362 (535)
                      .|  .++++++.++++++.++...      .++++. .|.   +++ -+.+.   .+.|++.++.  .|++++++-.++.
T Consensus       139 ~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~  216 (467)
T TIGR00873       139 PG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT  216 (467)
T ss_pred             CC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            44  37899999999999999763      677742 343   334 44443   3789999874  6899999988885

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.33  E-value=1.2e-10  Score=113.91  Aligned_cols=152  Identities=15%  Similarity=0.178  Sum_probs=113.6

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC---c-EEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY---P-VILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~---~-V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      .+||+|||+|.||.+++..++++|.   + ++++++ ++++.+...+.          .+             +..+++.
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~~   60 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR----------YN-------------VSTTTDW   60 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH----------cC-------------cEEeCCh
Confidence            4689999999999999999998873   3 777887 46665443211          01             1223344


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCE-EEEEe
Q 009395          222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVR  299 (535)
Q Consensus       222 -~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~l-veiv~  299 (535)
                       +.+.++|+||.|+|..  ..+++++++.+.++ +.+|+|.+.+++++.+.+.++...+++..||+.|...... ..++.
T Consensus        61 ~~~~~~~DiViiavp~~--~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~  137 (245)
T PRK07634         61 KQHVTSVDTIVLAMPPS--AHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTM  137 (245)
T ss_pred             HHHHhcCCEEEEecCHH--HHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEee
Confidence             3468899999999854  45788888887766 5688899999999999998866567889999877654332 33345


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCceEE
Q 009395          300 TNQTSPQVIVDLLDIGKKIKKTPIV  324 (535)
Q Consensus       300 ~~~ts~e~~~~~~~l~~~lGk~~i~  324 (535)
                      ....+++..+.+++++..+|..+.+
T Consensus       138 ~~~~~~~~~~~v~~lf~~~G~~~~~  162 (245)
T PRK07634        138 GQSVNETHKETLQLILKGIGTSQLC  162 (245)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            6667899999999999999988864

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.33  E-value=2.8e-12  Score=142.79  Aligned_cols=84  Identities=18%  Similarity=0.226  Sum_probs=79.6

Q ss_pred             CcccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccC
Q 009395          327 NCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKS  400 (535)
Q Consensus       327 d~~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~  400 (535)
                      ..+||++||++.++++||++++++|+  +|+|||.+++ |+|||+   |||+++|.+|+|.+.++++.++..+++++.|+
T Consensus       606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~p~  685 (699)
T TIGR02440       606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFTPC  685 (699)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCCC
Confidence            35899999999999999999999996  9999999999 999995   99999999999999999999999999988899


Q ss_pred             ccHHHHHHCC
Q 009395          401 MIIPIMQEDK  410 (535)
Q Consensus       401 ~~l~~~~~~G  410 (535)
                      +++.+|+++|
T Consensus       686 ~~L~~~~~~~  695 (699)
T TIGR02440       686 QRLVAMAAEK  695 (699)
T ss_pred             HHHHHHHHcC
Confidence            9999999985

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=99.31  E-value=4e-12  Score=127.55  Aligned_cols=98  Identities=13%  Similarity=0.041  Sum_probs=87.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |                                   
T Consensus       173 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  216 (298)
T PRK12478        173 HSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIP-L-----------------------------------  216 (298)
T ss_pred             HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCHHHH--------HHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCK--------SLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~~~~s~e~~--------~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.+.. .+++++++.|...+..++.|+|++        +++.+|++||+++..
T Consensus       217 ~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~  279 (298)
T PRK12478        217 SQLQAQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG  279 (298)
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            266678999988766 468999999999999999999997        599999999988643

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=99.31  E-value=5.3e-12  Score=124.34  Aligned_cols=97  Identities=24%  Similarity=0.262  Sum_probs=87.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||+++++++|.+++++++..+ |                                   
T Consensus       158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  201 (257)
T PRK05862        158 LCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFS-L-----------------------------------  201 (257)
T ss_pred             HHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      ++...+|++++.....++++++..|.+.+..++.|+++++++++|++||+++.
T Consensus       202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~  254 (257)
T PRK05862        202 PAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF  254 (257)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence            36778999999888888999999999999999999999999999999987653

>PLN02888 enoyl-CoA hydratase

Probab=99.30  E-value=8.1e-12  Score=123.38  Aligned_cols=99  Identities=25%  Similarity=0.309  Sum_probs=88.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++.+.|.+++++++..+ |                                   
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  206 (265)
T PLN02888        163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNN-Q-----------------------------------  206 (265)
T ss_pred             HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHh--cCHHHHHHHHHHhhcccCCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL--RSETCKSLVHIFFAQRGTSKVP  135 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~--~s~e~~~~i~aF~~kr~~~~~~  135 (535)
                      .+...+|++++.....++++++..|.+.+..++  .++++++++++|++||+++|.+
T Consensus       207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~  263 (265)
T PLN02888        207 GMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPS  263 (265)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCC
Confidence            266678999998888889999999998888885  5999999999999999988864

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=99.30  E-value=7.7e-12  Score=123.12  Aligned_cols=97  Identities=19%  Similarity=0.212  Sum_probs=87.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++.+.++++++++.+ |                                   
T Consensus       157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  200 (256)
T TIGR02280       157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQP-T-----------------------------------  200 (256)
T ss_pred             HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|+.++.....+++++++.|.+.+..++.|+++++++++|++||+++.
T Consensus       201 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  253 (256)
T TIGR02280       201 RGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF  253 (256)
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence            25667899999888888999999999999999999999999999999987764

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=99.29  E-value=9.3e-12  Score=122.68  Aligned_cols=97  Identities=31%  Similarity=0.467  Sum_probs=87.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|||++++++.|.++++++++.+ |                                   
T Consensus       158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  201 (257)
T PRK07658        158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKS-P-----------------------------------  201 (257)
T ss_pred             HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++.
T Consensus       202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  254 (257)
T PRK07658        202 ATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSF  254 (257)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence            26677899999887778999999999999999999999999999999887653

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=99.29  E-value=7.3e-12  Score=123.61  Aligned_cols=96  Identities=27%  Similarity=0.422  Sum_probs=87.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|||++++++++.++++++++.+ |                                   
T Consensus       164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  207 (260)
T PRK05980        164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHS-P-----------------------------------  207 (260)
T ss_pred             HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.....++++++..|.+.+..++.++++++++.+|++||+++
T Consensus       208 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~  259 (260)
T PRK05980        208 VAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPA  259 (260)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCC
Confidence            2666789999988888899999999999999999999999999999998764

>PRK08139 enoyl-CoA hydratase; Validated

Probab=99.29  E-value=8.5e-12  Score=123.38  Aligned_cols=97  Identities=16%  Similarity=0.190  Sum_probs=87.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.+.++++++++.+ |                                   
T Consensus       167 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  210 (266)
T PRK08139        167 MLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKS-P-----------------------------------  210 (266)
T ss_pred             HHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....++++++..|.+.+..++.++++++++++|++||+++.
T Consensus       211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  263 (266)
T PRK08139        211 AAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW  263 (266)
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence            25667899999888888999999999999999999999999999999987664

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.29  E-value=8.2e-13  Score=138.82  Aligned_cols=158  Identities=16%  Similarity=0.117  Sum_probs=116.1

Q ss_pred             ceEEEEeCChhhHHHHH--HH----HhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          148 KKVAILGGGLMGSGIAT--AL----ILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~--~l----~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      .||+|||+|.||.+++.  .+    ..+|++|++||++++.++.....+.+.+...    ..        ..++..++|+
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~----~~--------~~~I~~ttD~   68 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL----GA--------PLKIEATTDR   68 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc----CC--------CeEEEEeCCH
Confidence            37999999999998665  23    4568899999999999887665554333211    11        1356677886


Q ss_pred             -ccccCCCEEEEecc----------CChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCC--CCcEEeecccCC
Q 009395          222 -ESFKDVDMVIEAII----------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS--KDRIVGAHFFSP  288 (535)
Q Consensus       222 -~~~~~aDlVI~avp----------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~--~~r~ig~h~~~P  288 (535)
                       +++++||+||++++          ++..+|..+++++.+.+++++++.+++|...+.+++..+..  | +.+.+||.||
T Consensus        69 ~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNP  147 (423)
T cd05297          69 REALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANP  147 (423)
T ss_pred             HHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCCh
Confidence             57899999999998          35788999999999999999999999999999999887753  6 8999999999


Q ss_pred             CCCC-----CEE--EEEeCCCCCHHHHHHHHHHHHhcCCc
Q 009395          289 AHVM-----PLL--EIVRTNQTSPQVIVDLLDIGKKIKKT  321 (535)
Q Consensus       289 ~~~~-----~lv--eiv~~~~ts~e~~~~~~~l~~~lGk~  321 (535)
                      +..+     +..  .++.-   ...+......+.+.+|..
T Consensus       148 v~i~t~~~~k~~~~rviG~---c~~~~~~~~~~a~~l~~~  184 (423)
T cd05297         148 MAELTWALNRYTPIKTVGL---CHGVQGTAEQLAKLLGEP  184 (423)
T ss_pred             HHHHHHHHHHhCCCCEEEE---CCcHHHHHHHHHHHhCCC
Confidence            8543     111  22222   112455556666777753

linked to 3D####ucture

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=99.29  E-value=8.7e-12  Score=124.09  Aligned_cols=97  Identities=16%  Similarity=0.246  Sum_probs=88.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       178 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  221 (277)
T PRK08258        178 LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP-T-----------------------------------  221 (277)
T ss_pred             HHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....++++++..|.+.+..++.|+|+++++++|++||+++.
T Consensus       222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  274 (277)
T PRK08258        222 FAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF  274 (277)
T ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence            26667899999888888999999999999999999999999999999988764

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=99.29  E-value=1.1e-11  Score=122.30  Aligned_cols=97  Identities=32%  Similarity=0.318  Sum_probs=87.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++++.++++++++.+ |                                   
T Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  205 (261)
T PRK08138        162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMP-P-----------------------------------  205 (261)
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999998752 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .++..+|++++.....++++++..|.+.|..++.|+++++++++|++||+++.
T Consensus       206 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~  258 (261)
T PRK08138        206 LALAQIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY  258 (261)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence            26667899999888888999999999999999999999999999999987653

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=99.28  E-value=6.5e-12  Score=122.98  Aligned_cols=95  Identities=17%  Similarity=0.136  Sum_probs=85.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.|.++++++++.+ |                                   
T Consensus       155 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  198 (249)
T PRK07938        155 LFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKD-T-----------------------------------  198 (249)
T ss_pred             HHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT  131 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~  131 (535)
                      .+...+|++++.....+++++++.|...+..++.++++++++.+|++||++
T Consensus       199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p  249 (249)
T PRK07938        199 RVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA  249 (249)
T ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence            256678999988777788999999999999999999999999999999864

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=99.27  E-value=1.3e-11  Score=121.96  Aligned_cols=97  Identities=19%  Similarity=0.193  Sum_probs=87.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.+++++++..+ |                                   
T Consensus       164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~-~-----------------------------------  207 (263)
T PRK07799        164 LLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANG-P-----------------------------------  207 (263)
T ss_pred             HHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcC-h-----------------------------------
Confidence            5789999999999999999999999999999999999998853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus       208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~  260 (263)
T PRK07799        208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF  260 (263)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence            26667899999888788999999999999999999999999999999887653

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=99.26  E-value=1.5e-11  Score=121.48  Aligned_cols=96  Identities=21%  Similarity=0.212  Sum_probs=86.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++.+.++++++++.+ |                                   
T Consensus       163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~-----------------------------------  206 (262)
T PRK08140        163 LALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQP-T-----------------------------------  206 (262)
T ss_pred             HHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++||++.
T Consensus       207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~  258 (262)
T PRK08140        207 RGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPR  258 (262)
T ss_pred             HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence            2566789999988888899999999999999999999999999999998765

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=99.26  E-value=1.6e-11  Score=121.25  Aligned_cols=97  Identities=27%  Similarity=0.424  Sum_probs=87.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|||++++++.|.+++++++..+ |                                   
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  204 (260)
T PRK05809        161 LIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANA-P-----------------------------------  204 (260)
T ss_pred             HHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.+..++.|+++++++++|++||+++.
T Consensus       205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~  257 (260)
T PRK05809        205 IAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF  257 (260)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence            26667899999888888999999999999999999999999999999987654

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=99.26  E-value=1.6e-11  Score=120.85  Aligned_cols=97  Identities=25%  Similarity=0.309  Sum_probs=87.6

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||++||++++++.+.++++++++.+ |                                   
T Consensus       158 lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~-~-----------------------------------  201 (257)
T PRK06495        158 MMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKS-P-----------------------------------  201 (257)
T ss_pred             HHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....+++++++.|.+.+..++.|+|.++++.+|++||+++.
T Consensus       202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~  254 (257)
T PRK06495        202 LATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF  254 (257)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence            26667899998887888999999999999999999999999999999987763

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=99.26  E-value=1.9e-11  Score=120.45  Aligned_cols=97  Identities=25%  Similarity=0.344  Sum_probs=87.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       159 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  202 (258)
T PRK09076        159 MILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQS-P-----------------------------------  202 (258)
T ss_pred             HHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....++++.+..|.+.|..++.++++++++.+|++||+++.
T Consensus       203 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  255 (258)
T PRK09076        203 SAVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW  255 (258)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence            26667899998887778999999999999999999999999999999887653

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=99.26  E-value=1.9e-11  Score=120.19  Aligned_cols=97  Identities=22%  Similarity=0.237  Sum_probs=86.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  198 (254)
T PRK08252        155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANG-P-----------------------------------  198 (254)
T ss_pred             HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....++++.++.|.+.+..++.++++++++.+|++||+++.
T Consensus       199 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  251 (254)
T PRK08252        199 LAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW  251 (254)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence            26667899998887778899999999999999999999999999999877653

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=99.26  E-value=1.9e-11  Score=121.20  Aligned_cols=97  Identities=18%  Similarity=0.214  Sum_probs=87.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |                                   
T Consensus       170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  213 (269)
T PRK06127        170 LFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNA-P-----------------------------------  213 (269)
T ss_pred             HHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....++++.++.|...+..++.|+++++++.+|++||+++.
T Consensus       214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~  266 (269)
T PRK06127        214 LTLRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVF  266 (269)
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence            25667889998887788899999999999999999999999999999987653

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=99.25  E-value=1.7e-11  Score=120.58  Aligned_cols=97  Identities=27%  Similarity=0.339  Sum_probs=86.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++++.+++++++..+ |                                   
T Consensus       156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  199 (255)
T PRK06563        156 YLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAA-P-----------------------------------  199 (255)
T ss_pred             HHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence            5789999999999999999999999999999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....+++++++.|...+..++.++++++++.+|++||+++.
T Consensus       200 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  252 (255)
T PRK06563        200 LGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF  252 (255)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence            25667889998887778899999999999999999999999999999987653

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=99.25  E-value=2.1e-11  Score=119.92  Aligned_cols=97  Identities=25%  Similarity=0.326  Sum_probs=87.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|||++++++.|.+++++++..+ |                                   
T Consensus       156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~-----------------------------------  199 (255)
T PRK09674        156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHS-P-----------------------------------  199 (255)
T ss_pred             HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|+.++.....+++++++.|.+.+..++.++++++++++|++||+++.
T Consensus       200 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~  252 (255)
T PRK09674        200 LALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDF  252 (255)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence            26667899998888888999999999999999999999999999999887653

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=99.25  E-value=1.7e-11  Score=120.55  Aligned_cols=94  Identities=15%  Similarity=0.198  Sum_probs=85.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |                                   
T Consensus       163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  206 (256)
T PRK06143        163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCG-P-----------------------------------  206 (256)
T ss_pred             HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~  130 (535)
                      .+...+|+.++.....++++++..|.+.+..++.|+|+++++++|++||+
T Consensus       207 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~  256 (256)
T PRK06143        207 QALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR  256 (256)
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence            26667899999887788999999999999999999999999999999874

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=99.25  E-value=2.1e-11  Score=120.42  Aligned_cols=97  Identities=20%  Similarity=0.237  Sum_probs=85.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++.+.+.+++++++..+ |                                   
T Consensus       163 lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~-~-----------------------------------  206 (262)
T PRK07468        163 VFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCA-P-----------------------------------  206 (262)
T ss_pred             HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence            5789999999999999999999999999999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.......++.++.|.+.+..++.|+++++++.+|++||+++.
T Consensus       207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  259 (262)
T PRK07468        207 GAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW  259 (262)
T ss_pred             HHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence            26667889888776566788899999999999999999999999999998754

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=99.24  E-value=2.2e-11  Score=120.54  Aligned_cols=97  Identities=20%  Similarity=0.152  Sum_probs=87.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++.+.++++++++.+ |                                   
T Consensus       167 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~-----------------------------------  210 (266)
T PRK05981        167 LSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGP-T-----------------------------------  210 (266)
T ss_pred             HHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....+++++++.|...+..++.|+|+++++.+|++||+++.
T Consensus       211 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~  263 (266)
T PRK05981        211 VALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF  263 (266)
T ss_pred             HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence            25667889998887788999999999999999999999999999999987753

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.24  E-value=1.8e-10  Score=130.38  Aligned_cols=156  Identities=19%  Similarity=0.229  Sum_probs=117.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      ++||+|||+|.||.+++..+.++|  ++|++||++++.++.+.           +.|...           ...++. +.
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-----------~~g~~~-----------~~~~~~~~~   60 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-----------SLGVID-----------RGEEDLAEA   60 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-----------HCCCCC-----------cccCCHHHH
Confidence            578999999999999999999999  47999999988865532           223210           012233 34


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcC-CCCcEEeecccCCCC----------
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPAH----------  290 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~r~ig~h~~~P~~----------  290 (535)
                      +.+||+||+|+|.  ....++++++.+.++++++|++.+|+.  .++.+.+.++ .+.||++.||+....          
T Consensus        61 ~~~aDvVilavp~--~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~  138 (735)
T PRK14806         61 VSGADVIVLAVPV--LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD  138 (735)
T ss_pred             hcCCCEEEECCCH--HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence            7899999999985  467889999999888888776544432  2566666553 356899999985322          


Q ss_pred             --CCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       291 --~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                        ....+.+++...++++..+.+.++++.+|..++.++
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~  176 (735)
T PRK14806        139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD  176 (735)
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence              234567888888899999999999999999888886

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.24  E-value=6.3e-10  Score=111.12  Aligned_cols=199  Identities=17%  Similarity=0.194  Sum_probs=135.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV--------RANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      .+|+|||+|.+|.++|..++++|++|+.+|+|+.+++......        ...+...++            .++++.|+
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~------------~g~lraTt   77 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE------------SGKLRATT   77 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHh------------cCCceEec
Confidence            7899999999999999999999999999999999988765321        111222233            25678899


Q ss_pred             CcccccCCCEEEEeccC--------ChHHHHHHHHHHHhhcCCCceeeecCCcCc--HHHHHhh-------cCCCCcEEe
Q 009395          220 DYESFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGER-------TYSKDRIVG  282 (535)
Q Consensus       220 ~~~~~~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~-------~~~~~r~ig  282 (535)
                      +.+.++.||++|.|||.        |+....+..+.|.+++.++.+++.-+++.|  .+++...       +..+..|--
T Consensus        78 d~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l  157 (436)
T COG0677          78 DPEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL  157 (436)
T ss_pred             ChhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence            99999999999999973        566677778899999999998875555443  2233322       222222221


Q ss_pred             ecccCCCCCC---CEEE------EEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcc-cc---hhhhhH----HHHHHHHH
Q 009395          283 AHFFSPAHVM---PLLE------IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT-GF---AVNRMF----FPYTQAAF  345 (535)
Q Consensus       283 ~h~~~P~~~~---~lve------iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~-G~---i~nri~----~~~~~ea~  345 (535)
                      .|  .|-..+   .+.|      ++.|  .+++..+.+..+++.+-+..+.+.+.. ..   +..+++    .++.||-.
T Consensus       158 ay--sPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNEla  233 (436)
T COG0677         158 AY--SPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELA  233 (436)
T ss_pred             ee--CccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            11  332211   1222      4444  578999999999999777766666531 21   233333    46788887


Q ss_pred             HHHH-cCCCHHHHHHHHH
Q 009395          346 LLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       346 ~l~~-~G~~~~~ID~a~~  362 (535)
                      .+.+ .|++..++-++..
T Consensus       234 li~~~~GIdvwevIeaAn  251 (436)
T COG0677         234 LICNAMGIDVWEVIEAAN  251 (436)
T ss_pred             HHHHHhCCcHHHHHHHhc
Confidence            7775 6998887777665

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.24  E-value=1.5e-10  Score=121.66  Aligned_cols=201  Identities=15%  Similarity=0.125  Sum_probs=126.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +||+|||+|.||.++|..|+. |++|++||+++++++...+......    +.   ...+... .+++.++++.+.+++|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~----e~---~~~~l~~-~g~l~~t~~~~~~~~a   77 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNL----ET---TEEELRE-ARYLKFTSEIEKIKEC   77 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCC----CC---CHHHHHh-hCCeeEEeCHHHHcCC
Confidence            689999999999999999877 6999999999999887642211000    00   0011111 2356677777788999


Q ss_pred             CEEEEeccCCh--------HHHHHHHHHHHhhcCCCceeeecCCcCcHHHHH----hhcCC--C----CcEEeecccCCC
Q 009395          228 DMVIEAIIENV--------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIG----ERTYS--K----DRIVGAHFFSPA  289 (535)
Q Consensus       228 DlVI~avpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~~--~----~r~ig~h~~~P~  289 (535)
                      |++|.|||.+.        .......+.|.++++++.+++ ..||+++....    ..+..  .    ..|.-.  ++|.
T Consensus        78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI-~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~--~~PE  154 (425)
T PRK15182         78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVV-YESTVYPGCTEEECVPILARMSGMTFNQDFYVG--YSPE  154 (425)
T ss_pred             CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEE-EecCCCCcchHHHHHHHHHhccCCCcCCCeeEe--eCCC
Confidence            99999998542        333333457888898888775 45555543222    11211  0    111111  1232


Q ss_pred             CC---------CCEEEEEeCCCCCHHHHHHHHHHHHhcC-CceEEeCCc-ccc---hhhhhHH----HHHHHHHHHHH-c
Q 009395          290 HV---------MPLLEIVRTNQTSPQVIVDLLDIGKKIK-KTPIVVGNC-TGF---AVNRMFF----PYTQAAFLLVE-R  350 (535)
Q Consensus       290 ~~---------~~lveiv~~~~ts~e~~~~~~~l~~~lG-k~~i~v~d~-~G~---i~nri~~----~~~~ea~~l~~-~  350 (535)
                      ..         ..+-.++.|.  +++..+.+..+++.+. ..++++.+. .+.   ++++++.    +++||+..+.+ .
T Consensus       155 ~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~  232 (425)
T PRK15182        155 RINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRL  232 (425)
T ss_pred             cCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11         1222355553  5778889999999875 335666542 222   4555554    46899999987 6


Q ss_pred             CCCHHHHHHHHH
Q 009395          351 GTDLYLIDRAIT  362 (535)
Q Consensus       351 G~~~~~ID~a~~  362 (535)
                      |+|+.++-+++.
T Consensus       233 GiD~~~v~~a~~  244 (425)
T PRK15182        233 NIDTEAVLRAAG  244 (425)
T ss_pred             CcCHHHHHHHhc
Confidence            999999988865

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=99.24  E-value=2.7e-11  Score=120.01  Aligned_cols=97  Identities=22%  Similarity=0.236  Sum_probs=87.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  210 (266)
T PRK09245        167 MAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANP-P-----------------------------------  210 (266)
T ss_pred             HHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....++++.+..|.+.+..++.|+|+++++.+|++||+++.
T Consensus       211 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  263 (266)
T PRK09245        211 HALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF  263 (266)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence            26667899999887788999999999999999999999999999999987653

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=99.24  E-value=2.5e-11  Score=119.91  Aligned_cols=97  Identities=20%  Similarity=0.221  Sum_probs=86.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++.+++.+++++++..+ |                                   
T Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  205 (262)
T PRK05995        162 YFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANS-P-----------------------------------  205 (262)
T ss_pred             HHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHH-HHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....++++. ++.|...+..++.|+++++++.+|++||+++.
T Consensus       206 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~  259 (262)
T PRK05995        206 QAVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAW  259 (262)
T ss_pred             HHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence            266678999988777788888 88999999999999999999999999987764

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=99.24  E-value=2.8e-11  Score=119.41  Aligned_cols=97  Identities=21%  Similarity=0.300  Sum_probs=87.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||++||++++++.+.+++++++..+ |                                   
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  204 (260)
T PRK07657        161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNG-P-----------------------------------  204 (260)
T ss_pred             HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|+.++.....++++++..|.+.+..++.|+++++++++|+++|+++.
T Consensus       205 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~  257 (260)
T PRK07657        205 IAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY  257 (260)
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence            26667899999888788999999999999999999999999999999987653

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.23  E-value=3.3e-10  Score=108.91  Aligned_cols=163  Identities=18%  Similarity=0.163  Sum_probs=109.5

Q ss_pred             ceEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+||| +|.||++++..|+++|++|+++++++++.+.........   ....|. .        ..+..+++.+.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g~-~--------~~~~~~~~~ea~~~   68 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGGS-D--------IKVTGADNAEAAKR   68 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccCC-C--------ceEEEeChHHHHhc
Confidence            4799997 899999999999999999999999998876544221110   000110 0        01222334456889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-----------------HHHHhhcCCCCcEEeecccCCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-----------------NLIGERTYSKDRIVGAHFFSPA  289 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-----------------~~l~~~~~~~~r~ig~h~~~P~  289 (535)
                      +|+||.|+|.  ....++++++.+.++. +++++.+.+++.                 +.+++.++...+++...++.|.
T Consensus        69 aDvVilavp~--~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a  145 (219)
T TIGR01915        69 ADVVILAVPW--DHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA  145 (219)
T ss_pred             CCEEEEECCH--HHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence            9999999984  3456777887766654 777777776665                 3466666433688888665443


Q ss_pred             CC-------CCEEEEEeCCCCCHHHHHHHHHHHHhc-CCceEEeCC
Q 009395          290 HV-------MPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN  327 (535)
Q Consensus       290 ~~-------~~lveiv~~~~ts~e~~~~~~~l~~~l-Gk~~i~v~d  327 (535)
                      ..       .+...++.|+  +++..+.+.++.+.+ |..|+.++.
T Consensus       146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~  189 (219)
T TIGR01915       146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP  189 (219)
T ss_pred             HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence            21       1222334554  567888899999999 999988763

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=99.23  E-value=2.8e-11  Score=120.33  Aligned_cols=97  Identities=24%  Similarity=0.194  Sum_probs=86.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (535)
                      |+|||++++|+||+++||||+|||+ +++.+.+.++++++++.+ |                                  
T Consensus       175 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~-p----------------------------------  219 (275)
T PLN02664        175 LALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS-P----------------------------------  219 (275)
T ss_pred             HHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence            5789999999999999999999995 889999999999999863 2                                  


Q ss_pred             CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                       .+...+|++++.....+++++++.|...+..++.|+++++++.+|++||++..
T Consensus       220 -~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~  272 (275)
T PLN02664        220 -LAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF  272 (275)
T ss_pred             -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence             25667899998887788999999999999999999999999999999987653

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=99.23  E-value=2.7e-11  Score=119.43  Aligned_cols=96  Identities=24%  Similarity=0.322  Sum_probs=84.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||++||++++++.+.+++++++..+ |                                   
T Consensus       158 lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  201 (259)
T PRK06494        158 MILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACS-P-----------------------------------  201 (259)
T ss_pred             HHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHH--HHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKE--AEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E--~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.....+++++++.|  ...+..++.++++++++.+|++||+++
T Consensus       202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~  255 (259)
T PRK06494        202 LSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPR  255 (259)
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence            2666789999988777899999999  557889999999999999999987765

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=99.22  E-value=2.6e-11  Score=120.46  Aligned_cols=98  Identities=20%  Similarity=0.295  Sum_probs=87.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.++++++++...|                                   
T Consensus       172 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p-----------------------------------  216 (272)
T PRK06210        172 LLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP-----------------------------------  216 (272)
T ss_pred             HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCH-----------------------------------
Confidence            578999999999999999999999999999999999999874112                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....+++++++.|.+.+..++.++++++++.+|++||++..
T Consensus       217 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  269 (272)
T PRK06210        217 ASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF  269 (272)
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence            26667899999887888999999999999999999999999999999987653

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=99.22  E-value=2.2e-11  Score=121.08  Aligned_cols=99  Identities=19%  Similarity=0.189  Sum_probs=88.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       172 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  215 (278)
T PLN03214        172 LLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLP-S-----------------------------------  215 (278)
T ss_pred             HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP  135 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~  135 (535)
                      .+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++|.+.||..
T Consensus       216 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~  270 (278)
T PLN03214        216 AARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK  270 (278)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence            2566788999888777889999999999999999999999999999998877754

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=99.22  E-value=3e-11  Score=120.00  Aligned_cols=96  Identities=21%  Similarity=0.224  Sum_probs=86.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (535)
                      |+++|++++|+||+++||||+|||+ +++++.+.+++++++..+ |                                  
T Consensus       173 l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~-~----------------------------------  217 (272)
T PRK06142        173 LALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS-P----------------------------------  217 (272)
T ss_pred             HHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence            5789999999999999999999986 889999999999998852 2                                  


Q ss_pred             CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                       .+...+|+.+++....++++++..|...+..++.|+++++++.+|++||+++
T Consensus       218 -~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~  269 (272)
T PRK06142        218 -LAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE  269 (272)
T ss_pred             -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence             2666789999988777899999999999999999999999999999998765

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=99.22  E-value=3.3e-11  Score=118.97  Aligned_cols=96  Identities=21%  Similarity=0.330  Sum_probs=86.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.+++++++..+ |                                   
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~-~-----------------------------------  205 (260)
T PRK07511        162 LLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGS-P-----------------------------------  205 (260)
T ss_pred             HHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|+.++.+...+++++++.|.+.|..++.++++++++++|+++|+++
T Consensus       206 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~  257 (260)
T PRK07511        206 NALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPD  257 (260)
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCC
Confidence            2566789999988888899999999999999999999999999999998765

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.21  E-value=3.1e-10  Score=111.74  Aligned_cols=141  Identities=19%  Similarity=0.229  Sum_probs=102.8

Q ss_pred             HHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCChH
Q 009395          162 IATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS  239 (535)
Q Consensus       162 iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~~~  239 (535)
                      ||+.|.++|  ++|+.+|++++.++.+.           +.|.++.           ..++.+.+.+||+||.|+|  +.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~-----------~~g~~~~-----------~~~~~~~~~~~DlvvlavP--~~   56 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAAL-----------ELGIIDE-----------ASTDIEAVEDADLVVLAVP--VS   56 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHH-----------HTTSSSE-----------EESHHHHGGCCSEEEE-S---HH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHH-----------HCCCeee-----------ccCCHhHhcCCCEEEEcCC--HH
Confidence            578889999  68999999999887653           3454321           1222567899999999998  45


Q ss_pred             HHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcCCCCcEEeecccCCCC------------CCCEEEEEeCCCCCH
Q 009395          240 LKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH------------VMPLLEIVRTNQTSP  305 (535)
Q Consensus       240 ~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~------------~~~lveiv~~~~ts~  305 (535)
                      ...++++++.++++++++|++.+|..  ++..+.+.++...+|+|.||+..+.            .+..+.++|++.+++
T Consensus        57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~  136 (258)
T PF02153_consen   57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP  136 (258)
T ss_dssp             HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred             HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence            67899999999999999999888865  3445566665567999999997551            257788999999999


Q ss_pred             HHHHHHHHHHHhcCCceEEeC
Q 009395          306 QVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       306 e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      +.++.+.++++.+|..++.+.
T Consensus       137 ~~~~~~~~l~~~~Ga~~~~~~  157 (258)
T PF02153_consen  137 EALELVEELWEALGARVVEMD  157 (258)
T ss_dssp             HHHHHHHHHHHHCT-EEEE--
T ss_pred             HHHHHHHHHHHHCCCEEEEcC
Confidence            999999999999999888875

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.21  E-value=2e-10  Score=117.43  Aligned_cols=166  Identities=16%  Similarity=0.134  Sum_probs=100.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      .+||+|||+|.||.+||..|+++|++|++|+++++..+.....-...  ... .|.       ....++..++++ +.++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~~-~g~-------~~~~~~~~~~~~~e~~~   73 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EYL-PGV-------ALPAELYPTADPEEALA   73 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--ccC-CCC-------cCCCCeEEeCCHHHHHc
Confidence            35899999999999999999999999999999988776543210000  000 010       001123344455 4478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc-----HHHHHhhcCC--CCcE-EeecccCCCC---CCCE
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-----LNLIGERTYS--KDRI-VGAHFFSPAH---VMPL  294 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-----~~~l~~~~~~--~~r~-ig~h~~~P~~---~~~l  294 (535)
                      +||+||+|+|+..  .++++    +.+++++++++.+.++.     ...+++.+..  ..++ +-..|..+..   ..+.
T Consensus        74 ~aD~Vi~~v~~~~--~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~  147 (328)
T PRK14618         74 GADFAVVAVPSKA--LRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPA  147 (328)
T ss_pred             CCCEEEEECchHH--HHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCe
Confidence            9999999999762  24444    45667777776666554     3355554422  0111 1112222111   1123


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       295 veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                      ..++.+  .+++.++.+++++...|..+....|.-|
T Consensus       148 ~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g  181 (328)
T PRK14618        148 ATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVG  181 (328)
T ss_pred             EEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            333433  3688899999999999987776555333

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=99.21  E-value=1.7e-11  Score=131.60  Aligned_cols=97  Identities=9%  Similarity=0.010  Sum_probs=89.4

Q ss_pred             ccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCCC
Q 009395            2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT   81 (535)
Q Consensus         2 lltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (535)
                      ++||++++|+||+++||||+|||++++++++.++|++++..+ |                                   .
T Consensus       446 ~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p-----------------------------------~  489 (550)
T PRK08184        446 AKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLS-P-----------------------------------D  489 (550)
T ss_pred             HHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCC-H-----------------------------------H
Confidence            589999999999999999999999999999999999999963 2                                   2


Q ss_pred             cHHHHHHHHHHhhcCChHHH-HHHHHHHHHHHhcCHHHHH---HHHHHhhcccCCCC
Q 009395           82 HPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSKV  134 (535)
Q Consensus        82 A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~~~~s~e~~~---~i~aF~~kr~~~~~  134 (535)
                      |...+|++++.+...+++++ +..|.+.|..++.|+|+++   ++.+|++||+++..
T Consensus       490 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~  546 (550)
T PRK08184        490 ALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFD  546 (550)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCC
Confidence            67789999999999999999 9999999999999999999   99999999998653

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.20  E-value=7.1e-10  Score=111.27  Aligned_cols=202  Identities=17%  Similarity=0.261  Sum_probs=130.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-  222 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  222 (535)
                      +||+|||+|.+|...+.+|+..||+|+.+|+++++++...+..    +..++.+++++..+        +|+++|+|++ 
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence            5899999999999999999999999999999999998877543    23344444443221        4688999996 


Q ss_pred             cccCCCEEEEeccC--------ChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcC--CCCcEEeecccCCC
Q 009395          223 SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY--SKDRIVGAHFFSPA  289 (535)
Q Consensus       223 ~~~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~--~~~r~ig~h~~~P~  289 (535)
                      +++++|++|.||+.        |......+.++|.++++..++++ +-||+|+.   .+...+.  .+.+-.++- +||-
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~-~NPE  150 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVA-SNPE  150 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEe-cChH
Confidence            58999999999963        55577788889999998866554 56777764   3333221  111111111 2332


Q ss_pred             CC----------CCEEEEEeCCCCCHHHHHHHHHHHHhc--CCceEEeCCcc-c----chhhhhHH---HHHHHHHHHHH
Q 009395          290 HV----------MPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNCT-G----FAVNRMFF---PYTQAAFLLVE  349 (535)
Q Consensus       290 ~~----------~~lveiv~~~~ts~e~~~~~~~l~~~l--Gk~~i~v~d~~-G----~i~nri~~---~~~~ea~~l~~  349 (535)
                      ..          .|--.++...  ++.+.+.+.+++...  ...|++..+.. .    +..|-+++   .++||-..+.+
T Consensus       151 FLREG~Av~D~~~PdRIViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice  228 (414)
T COG1004         151 FLREGSAVYDFLYPDRIVIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICE  228 (414)
T ss_pred             HhcCcchhhhccCCCeEEEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            10          1111233322  233455555555443  45566655422 1    33566665   46899999887


Q ss_pred             -cCCCHHHHHHHH
Q 009395          350 -RGTDLYLIDRAI  361 (535)
Q Consensus       350 -~G~~~~~ID~a~  361 (535)
                       -|++.++|-+++
T Consensus       229 ~~g~D~~~V~~gI  241 (414)
T COG1004         229 KVGADVKQVAEGI  241 (414)
T ss_pred             HhCCCHHHHHHHc
Confidence             588988887764

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=99.20  E-value=2e-11  Score=130.71  Aligned_cols=97  Identities=10%  Similarity=-0.002  Sum_probs=89.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |                                   
T Consensus       441 ~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  484 (546)
T TIGR03222       441 RDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFS-P-----------------------------------  484 (546)
T ss_pred             HHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999963 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHH-HHHHHHHHHHHhcCHHHHH---HHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAG-LQKEAEDFQKLLRSETCKS---LVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~-l~~E~~~f~~~~~s~e~~~---~i~aF~~kr~~~~  133 (535)
                      .|...+|++++.+...+++++ +..|.+.|..++.|+|+++   ++.+|++||+++.
T Consensus       485 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f  541 (546)
T TIGR03222       485 DALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQF  541 (546)
T ss_pred             HHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCC
Confidence            266678999999988999999 9999999999999999999   9999999999865

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=99.19  E-value=4.7e-11  Score=117.82  Aligned_cols=97  Identities=20%  Similarity=0.257  Sum_probs=85.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  201 (261)
T PRK03580        158 MVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSA-P-----------------------------------  201 (261)
T ss_pred             HHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHH----HHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAE----DFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~----~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....+++++++.|..    .+..++.++++++++.+|++||+++.
T Consensus       202 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~  258 (261)
T PRK03580        202 LAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW  258 (261)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence            256678899988877888999988863    78889999999999999999987653

>PLN02712 arogenate dehydrogenase

Probab=99.19  E-value=2.7e-10  Score=125.78  Aligned_cols=154  Identities=14%  Similarity=0.085  Sum_probs=108.6

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (535)
                      ..++|+|||+|.||.++|..|.+.|++|++||++.+. +.+.           +.|.             ...++.++ +
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~Gv-------------~~~~~~~el~  422 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLGV-------------SYFSDADDLC  422 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcCC-------------eEeCCHHHHH
Confidence            3478999999999999999999999999999998542 2111           1121             12234433 4


Q ss_pred             c-CCCEEEEeccCChHHHHHHHHHHHh-hcCCCceeeecCCc--CcHHHHHhhcCCCCcEEeecccCCCCCC--C---EE
Q 009395          225 K-DVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTST--IDLNLIGERTYSKDRIVGAHFFSPAHVM--P---LL  295 (535)
Q Consensus       225 ~-~aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~--~~~~~l~~~~~~~~r~ig~h~~~P~~~~--~---lv  295 (535)
                      . .||+||.|+|.  .....++.++.. .+++++++++.+|+  .+++.+...++...+|++.||+.+....  .   +.
T Consensus       423 ~~~aDvVILavP~--~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~  500 (667)
T PLN02712        423 EEHPEVILLCTSI--LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLA  500 (667)
T ss_pred             hcCCCEEEECCCh--HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhh
Confidence            3 58999999994  355677777765 57889999988877  4555666666555679999999876542  1   11


Q ss_pred             -----EEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          296 -----EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       296 -----eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                           .++.++....+.++.+.+++..+|..++.+.
T Consensus       501 ~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms  536 (667)
T PLN02712        501 FVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS  536 (667)
T ss_pred             hhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence                 1123344455667777899999999888876

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=99.19  E-value=5.6e-11  Score=117.27  Aligned_cols=96  Identities=25%  Similarity=0.363  Sum_probs=86.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||++||++++++.|.+++++++..+ |                                   
T Consensus       160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~-~-----------------------------------  203 (259)
T PRK06688        160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGP-A-----------------------------------  203 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.....++++++..|.+.+..++.++++++++++|++|++++
T Consensus       204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~  255 (259)
T PRK06688        204 SALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPD  255 (259)
T ss_pred             HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCC
Confidence            2555688899888888899999999999999999999999999999988765

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=99.19  E-value=4.9e-11  Score=117.67  Aligned_cols=96  Identities=20%  Similarity=0.169  Sum_probs=85.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||++| ++++.+.+.+++++++..+ |                                   
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~-~-----------------------------------  204 (260)
T PRK07659        162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKP-L-----------------------------------  204 (260)
T ss_pred             HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            57899999999999999999999 7889999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....+++++++.|.+.+..++.|+++++++.+|++||+++.
T Consensus       205 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~  257 (260)
T PRK07659        205 KAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF  257 (260)
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence            25667889998887788999999999999999999999999999999987753

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.17  E-value=7.4e-10  Score=113.90  Aligned_cols=164  Identities=13%  Similarity=0.140  Sum_probs=106.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CC---HHHHHhhhcccccccCcc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MT---QEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~---~~~~~~~~~~i~~~~~~~  222 (535)
                      ++||+|||+|.||+.+|..|+++|++|++||+++. .+...           +.|. +.   ..+......++..+++.+
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~   69 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELR-----------AHGLTLTDYRGRDVRVPPSAIAFSTDPA   69 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHH-----------hcCceeecCCCcceecccceeEeccChh
Confidence            46899999999999999999999999999999653 22221           1111 00   000000112344455666


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEEeeccc-----CCCC-----C
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFF-----SPAH-----V  291 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h~~-----~P~~-----~  291 (535)
                      .+.++|+||+|++..  ...++++.+.+.++++++|++.+.++.. +.+.+.++....+.|.+++     .|..     .
T Consensus        70 ~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~  147 (341)
T PRK08229         70 ALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTS  147 (341)
T ss_pred             hccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCC
Confidence            778999999999754  3467889999999999988887777764 4566666443334444443     2211     1


Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                      +. +.+  +.   .+.++.+.++++..|.....++|..+
T Consensus       148 g~-l~~--~~---~~~~~~~~~~l~~~g~~~~~~~di~~  180 (341)
T PRK08229        148 GA-LAI--EA---SPALRPFAAAFARAGLPLVTHEDMRA  180 (341)
T ss_pred             Cc-eEe--cC---CchHHHHHHHHHhcCCCceecchhHH
Confidence            11 111  21   24467888999999988888877543

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.17  E-value=1.2e-10  Score=115.16  Aligned_cols=164  Identities=16%  Similarity=0.211  Sum_probs=110.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH-HHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR-VRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~-i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~  225 (535)
                      +||+|||+|.||+++|..|+++|++|++|.++++.+++.... .+..|   .. |..       ....+..++|++. ++
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~y---Lp-~i~-------lp~~l~at~Dl~~a~~   70 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKY---LP-GIL-------LPPNLKATTDLAEALD   70 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccc---cC-Ccc-------CCcccccccCHHHHHh
Confidence            689999999999999999999999999999999988775432 11111   11 111       1235677888854 67


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH------HHHH-hhcCCCCcEEeecccC-CCC------C
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL------NLIG-ERTYSKDRIVGAHFFS-PAH------V  291 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~------~~l~-~~~~~~~r~ig~h~~~-P~~------~  291 (535)
                      +||+|+.+||.  +..+++++++.+.+++++++++.+-++..      +++. +.++. .+ ++  +.. |.+      .
T Consensus        71 ~ad~iv~avPs--~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~-~~-~~--vLSGPs~A~EVa~g  144 (329)
T COG0240          71 GADIIVIAVPS--QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPD-NP-IA--VLSGPSFAKEVAQG  144 (329)
T ss_pred             cCCEEEEECCh--HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCC-Ce-EE--EEECccHHHHHhcC
Confidence            79999999995  47789999998889999999888766533      3333 33331 11 22  112 321      1


Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                      .+....+.+  .+++..+.++.+|..--.+++...|..|
T Consensus       145 ~pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G  181 (329)
T COG0240         145 LPTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG  181 (329)
T ss_pred             CCcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence            333334444  4677888888888774455555566555

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=99.16  E-value=7.8e-11  Score=115.71  Aligned_cols=93  Identities=23%  Similarity=0.178  Sum_probs=82.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++.|.++|+++++.+ |                                   
T Consensus       157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  200 (254)
T PRK08259        157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFP-Q-----------------------------------  200 (254)
T ss_pred             HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~  130 (535)
                      .+...+|++++.....++++++..|...+..++. +|+++++.+|++|++
T Consensus       201 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~  249 (254)
T PRK08259        201 TCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG  249 (254)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence            2566789999887777899999999998888887 999999999998775

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=99.16  E-value=5.4e-11  Score=117.25  Aligned_cols=96  Identities=17%  Similarity=0.227  Sum_probs=81.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|||++++++++.++++++++.+ |                                   
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  204 (259)
T TIGR01929       161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKS-P-----------------------------------  204 (259)
T ss_pred             HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++..... .+..+..|...+..++.|+|+++++.+|++||+++.
T Consensus       205 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~  256 (259)
T TIGR01929       205 MAIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF  256 (259)
T ss_pred             HHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence            2566788888776443 345566678899999999999999999999988764

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=99.16  E-value=7e-11  Score=116.79  Aligned_cols=97  Identities=16%  Similarity=0.253  Sum_probs=84.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++.+.+.++++++++.+ |                                   
T Consensus       164 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  207 (265)
T PRK05674        164 YALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNS-P-----------------------------------  207 (265)
T ss_pred             HHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~-E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....++++++.. |.+.+..++.|+++++++++|++||+++.
T Consensus       208 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~  261 (265)
T PRK05674        208 QALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAW  261 (265)
T ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCC
Confidence            256678999998888888888765 55678888999999999999999987653

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=99.16  E-value=9.6e-11  Score=116.32  Aligned_cols=97  Identities=16%  Similarity=0.226  Sum_probs=81.6

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++.+.++|+++++.+ |                                   
T Consensus       171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  214 (273)
T PRK07396        171 IWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNS-P-----------------------------------  214 (273)
T ss_pred             HHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.... ..+...+.|.+.+..++.|+++++++.+|++||+++..
T Consensus       215 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~  267 (273)
T PRK07396        215 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS  267 (273)
T ss_pred             HHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence            255678888877643 34445567888899999999999999999999987643

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=99.16  E-value=9.4e-11  Score=115.31  Aligned_cols=94  Identities=19%  Similarity=0.143  Sum_probs=85.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||++||++++.+.+.+++++++..+ |                                   
T Consensus       162 l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  205 (255)
T PRK07260        162 LAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGS-S-----------------------------------  205 (255)
T ss_pred             HHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~  130 (535)
                      .+...+|+.++.....++++++..|...+..++.|+++++++.+|++||+
T Consensus       206 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~  255 (255)
T PRK07260        206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR  255 (255)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence            25667899999887888999999999999999999999999999999874

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=99.15  E-value=9.7e-11  Score=118.56  Aligned_cols=126  Identities=21%  Similarity=0.401  Sum_probs=94.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      .+||+|||+|.||.++|..++..|+ +|+++|++++.+..-.      ++.....      .......++..++++++++
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~------ld~~~~~------~~~~~~~~I~~~~d~~~l~   73 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKA------LDISHSN------VIAGSNSKVIGTNNYEDIA   73 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHH------HHHHhhh------hccCCCeEEEECCCHHHhC
Confidence            3699999999999999999999996 9999999998753211      1111110      0011123566668889999


Q ss_pred             CCCEEEEec-------------------cCChHHHHHHHHHHHhhcCCC-ceeeecCCcCcHHHHHhhcCCC-CcEEeec
Q 009395          226 DVDMVIEAI-------------------IENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH  284 (535)
Q Consensus       226 ~aDlVI~av-------------------pe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h  284 (535)
                      +||+||++.                   +++..+++++.+++.+++++. .|++||.+.+....++...+.| .|++|++
T Consensus        74 ~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         74 GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            999999955                   557788999999999999774 5778998888777777766665 7899975

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=99.15  E-value=1.2e-10  Score=115.81  Aligned_cols=97  Identities=23%  Similarity=0.183  Sum_probs=80.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++++.++|++++..+ |                                   
T Consensus       174 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  217 (276)
T PRK05864        174 IMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFS-R-----------------------------------  217 (276)
T ss_pred             HHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcC-ChHHHHHHHHHHHH-HHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQ-KLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~-~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++..... ++++.+..|...+. .++.|+++++++.+|++||+++.
T Consensus       218 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~  272 (276)
T PRK05864        218 PGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVF  272 (276)
T ss_pred             HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence            2566788988877654 68888887875432 35789999999999999987653

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=99.14  E-value=1.2e-10  Score=114.96  Aligned_cols=97  Identities=19%  Similarity=0.202  Sum_probs=82.6

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       160 l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  203 (261)
T PRK11423        160 MFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P-----------------------------------  203 (261)
T ss_pred             HHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhc-CCh-HHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVV-SGP-RAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~-~~~-~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.... .+. +..++.|.+.+..++.|+|+++++.+|++||+++.
T Consensus       204 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~  258 (261)
T PRK11423        204 LAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF  258 (261)
T ss_pred             HHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence            256678888876543 233 57788898999999999999999999999987764

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=99.13  E-value=1.3e-10  Score=115.35  Aligned_cols=94  Identities=19%  Similarity=0.193  Sum_probs=82.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++|++.+.+++++++..+ |                                   
T Consensus       168 llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  211 (275)
T PRK09120        168 YIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKN-P-----------------------------------  211 (275)
T ss_pred             HHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHH--HHHHHhcCH-HHHHHHHHHhhccc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAE--DFQKLLRSE-TCKSLVHIFFAQRG  130 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~--~f~~~~~s~-e~~~~i~aF~~kr~  130 (535)
                      .+...+|++++.....+++++++.|..  .+..++.++ |+++++++|++||.
T Consensus       212 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~  264 (275)
T PRK09120        212 VVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS  264 (275)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence            266678999998888888899888764  455678898 89999999999987

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.13  E-value=8.7e-09  Score=101.25  Aligned_cols=148  Identities=19%  Similarity=0.178  Sum_probs=98.0

Q ss_pred             hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCCh
Q 009395          159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV  238 (535)
Q Consensus       159 G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~~  238 (535)
                      |.+||..|+++||+|++||+++++.+...      .+...+.|.            ....+..+.+++||+||.|+|.+.
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~------~e~LaeaGA------------~~AaS~aEAAa~ADVVIL~LPd~a   93 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDL------WKKVEDAGV------------KVVSDDKEAAKHGEIHVLFTPFGK   93 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhh------hHHHHHCCC------------eecCCHHHHHhCCCEEEEecCCHH
Confidence            88999999999999999999987653211      011123332            112233466889999999999654


Q ss_pred             HHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhc----CCCCcEEeecccCCCCC----CCEEEEE------eCCCCC
Q 009395          239 SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YSKDRIVGAHFFSPAHV----MPLLEIV------RTNQTS  304 (535)
Q Consensus       239 ~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~~~~r~ig~h~~~P~~~----~~lveiv------~~~~ts  304 (535)
                       ..++++..+.+.++++++++ ++||+++..+...+    ....+-+|+..|+|..+    ..-.-++      .-...+
T Consensus        94 -aV~eVl~GLaa~L~~GaIVI-D~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~  171 (341)
T TIGR01724        94 -GTFSIARTIIEHVPENAVIC-NTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMAT  171 (341)
T ss_pred             -HHHHHHHHHHhcCCCCCEEE-ECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCC
Confidence             44566777888899999775 57778877655443    22333445544444321    1111122      222357


Q ss_pred             HHHHHHHHHHHHhcCCceEEeC
Q 009395          305 PQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      +|+++.+.++.+..|+.++++.
T Consensus       172 ee~i~~~~el~~~~~~~~~~~p  193 (341)
T TIGR01724       172 EEQISKCVELAKSTGKKAYVVP  193 (341)
T ss_pred             HHHHHHHHHHHHHhCCCeeecc
Confidence            9999999999999999999885

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.13  E-value=1.2e-10  Score=130.09  Aligned_cols=85  Identities=20%  Similarity=0.311  Sum_probs=76.6

Q ss_pred             ccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccCcc
Q 009395          329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI  402 (535)
Q Consensus       329 ~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  402 (535)
                      +..++||++.++++||++++++|+  +|+|||.+++ ++|||+   |||+++|.+|+|+++++++.+. .+++++.|+++
T Consensus       624 ~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~p~~~  702 (715)
T PRK11730        624 DEEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQVPEG  702 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCCCCHH
Confidence            446899999999999999999994  9999999999 999986   9999999999999999999764 58888889999


Q ss_pred             HHHHHHCCCCCccCCceee
Q 009395          403 IPIMQEDKRAGETTRKGFY  421 (535)
Q Consensus       403 l~~~~~~G~~G~k~g~GFY  421 (535)
                      +++|+++|       ++||
T Consensus       703 L~~~v~~~-------~~f~  714 (715)
T PRK11730        703 LREMAANG-------ESYY  714 (715)
T ss_pred             HHHHHHcC-------CCCC
Confidence            99999875       5687

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.13  E-value=1.2e-09  Score=110.53  Aligned_cols=139  Identities=18%  Similarity=0.203  Sum_probs=93.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      +||+|||+|.||.++|..|+.+|++|++|++++..                                     ++ +.+++
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~   47 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD   47 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence            57999999999999999999999999999997531                                     11 33578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhh-cCCCceeeecCCcCcHH------HHH-hhcCCCCcEEeecccCCCC------CC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLN------LIG-ERTYSKDRIVGAHFFSPAH------VM  292 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~------~l~-~~~~~~~r~ig~h~~~P~~------~~  292 (535)
                      ||+||.|+|..  ..+.++.++.++ +++++++++.+.++.+.      ++. ..+. ..+++.+  ..|..      ..
T Consensus        48 advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~-~~~v~~i--~gp~~a~ei~~~~  122 (308)
T PRK14619         48 ADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFP-NHPVVVL--SGPNLSKEIQQGL  122 (308)
T ss_pred             CCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcC-CCceEEE--ECCCcHHHHhcCC
Confidence            99999999963  567888888764 67788888776655433      211 1221 1122210  12211      11


Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                      +...++.+  .+.+..+.+++++...|..++..+|..|
T Consensus       123 ~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~~d~~G  158 (308)
T PRK14619        123 PAATVVAS--RDLAAAETVQQIFSSERFRVYTNSDPLG  158 (308)
T ss_pred             CeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence            22223333  2688899999999999988887666434

>PLN02921 naphthoate synthase

Probab=99.13  E-value=1.4e-10  Score=117.31  Aligned_cols=97  Identities=20%  Similarity=0.211  Sum_probs=80.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++++.+++++++..+ |                                   
T Consensus       225 llltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  268 (327)
T PLN02921        225 MWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNS-P-----------------------------------  268 (327)
T ss_pred             HHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++..... .+.....|...+..++.|+|+++++.+|++||+++..
T Consensus       269 ~al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~  321 (327)
T PLN02921        269 TAIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS  321 (327)
T ss_pred             HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence            2566788888876543 3333344558888899999999999999999987653

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.12  E-value=7.6e-11  Score=116.76  Aligned_cols=70  Identities=26%  Similarity=0.305  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCC
Q 009395          459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQG  529 (535)
Q Consensus       459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~  529 (535)
                      ..||+||++.++++||++++.+|++ ++++||.+++.|+|||+|||.++|++|+|+++++++.+++.++++
T Consensus       185 pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pmGpf~l~D~~GlD~~~~i~~~~~~~~~~~  254 (307)
T COG1250         185 PGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPMGPFELADLIGLDVMLHIMKVLNETLGDD  254 (307)
T ss_pred             CceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCccHHHHHHHHhHHHHHHHHHHHHHhcCCC
Confidence            4599999999999999999999998 999999999999999999999999999999999999999877744

>PLN02712 arogenate dehydrogenase

Probab=99.11  E-value=1.8e-09  Score=119.15  Aligned_cols=154  Identities=15%  Similarity=0.119  Sum_probs=105.6

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (535)
                      +.++|+|||+|.||.++|..|.++|++|++||++... +.+.           +.|             +...++.++ +
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~  105 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLC  105 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHh
Confidence            3468999999999999999999999999999998543 2111           112             112334433 3


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHH-hhcCCCceeeecCCcCc--HHHHHhhcCCCCcEEeecccCCCCC-----CCEE
Q 009395          225 -KDVDMVIEAIIENVSLKQQIFADLE-KYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAHV-----MPLL  295 (535)
Q Consensus       225 -~~aDlVI~avpe~~~~k~~v~~~l~-~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~~-----~~lv  295 (535)
                       .+||+||.|+|.  ....+++.++. +.++++++|++.+|...  ...+...++...+|+++||+..+..     ....
T Consensus       106 ~~~aDvViLavP~--~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~  183 (667)
T PLN02712        106 ERHPDVILLCTSI--ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLR  183 (667)
T ss_pred             hcCCCEEEEcCCH--HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCc
Confidence             469999999984  45678888875 56788998887776542  3445555554457999999875541     1111


Q ss_pred             EEEe-----CCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          296 EIVR-----TNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       296 eiv~-----~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      .+..     .+....+.++.+.++++.+|..++.+.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms  219 (667)
T PLN02712        184 FVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS  219 (667)
T ss_pred             EEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence            2222     222334567788899999999998886

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=99.10  E-value=1.9e-10  Score=113.21  Aligned_cols=96  Identities=19%  Similarity=0.261  Sum_probs=77.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++++.++++++++.+ |                                   
T Consensus       158 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~-----------------------------------  201 (256)
T TIGR03210       158 IWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKS-P-----------------------------------  201 (256)
T ss_pred             HHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++......... ...|...+..++.|+++++++.+|++||+++.
T Consensus       202 ~a~~~~K~~l~~~~~~~~~~-~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~  253 (256)
T TIGR03210       202 TAIAIAKRSFNMDTAHQRGI-AGMGMYALKLYYDTAESREGVKAFQEKRKPEF  253 (256)
T ss_pred             HHHHHHHHHHHHhhcccchH-HHHHHHHHHHHccChhHHHHHHHHhccCCCCC
Confidence            25667888887764432111 12356788889999999999999999987653

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=99.10  E-value=2e-10  Score=115.71  Aligned_cols=122  Identities=20%  Similarity=0.354  Sum_probs=89.6

Q ss_pred             EEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009395          150 VAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD  228 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  228 (535)
                      |+|||+|.||.++|..++.+|+ +|+++|++++..+.....+...    .        .......+++.+++++++++||
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~----~--------~~~~~~~~I~~t~d~~~l~dAD   68 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQA----A--------PILGSDTKVTGTNDYEDIAGSD   68 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHh----h--------hhcCCCeEEEEcCCHHHhCCCC
Confidence            6899999999999999999887 9999999977543211111110    0        0111123566667788899999


Q ss_pred             EEEEec--------------cCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHHHHhhcCC-CCcEEee
Q 009395          229 MVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA  283 (535)
Q Consensus       229 lVI~av--------------pe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~~~~~~-~~r~ig~  283 (535)
                      +||+++              +++..+++++++++.++++++. |++||.+.+....+++..+. |.|++|+
T Consensus        69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl  139 (300)
T cd01339          69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM  139 (300)
T ss_pred             EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence            999876              6788899999999999998777 56788877666666666554 4688886

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.09  E-value=2.1e-10  Score=127.86  Aligned_cols=81  Identities=20%  Similarity=0.301  Sum_probs=74.3

Q ss_pred             ccchhhhhHHHHHHHHHHHHHcC-C-CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccCcc
Q 009395          329 TGFAVNRMFFPYTQAAFLLVERG-T-DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI  402 (535)
Q Consensus       329 ~G~i~nri~~~~~~ea~~l~~~G-~-~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  402 (535)
                      ...++||++.+++||+++++++| + +++|||.++. |+|||+   |||+++|.+|++.+.++++.+ ..+++++.|+++
T Consensus       624 ~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~-~~~g~~~~p~~~  702 (714)
T TIGR02437       624 DEEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQY-AELGALYQVTAK  702 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHH-HHhCCCCCCCHH
Confidence            45699999999999999999999 4 9999999999 999997   999999999999999999965 488888889999


Q ss_pred             HHHHHHCC
Q 009395          403 IPIMQEDK  410 (535)
Q Consensus       403 l~~~~~~G  410 (535)
                      +.+|+++|
T Consensus       703 l~~~~~~g  710 (714)
T TIGR02437       703 LREMAKNG  710 (714)
T ss_pred             HHHHHHcC
Confidence            99999886

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK08321 naphthoate synthase; Validated

Probab=99.09  E-value=2.5e-10  Score=114.86  Aligned_cols=96  Identities=20%  Similarity=0.217  Sum_probs=81.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||++||++++++++.+++++++..+ |                                   
T Consensus       200 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  243 (302)
T PRK08321        200 IFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKS-P-----------------------------------  243 (302)
T ss_pred             HHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++..... ..+....|.+.+..++.++++++++.+|++||+++.
T Consensus       244 ~a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~  295 (302)
T PRK08321        244 TAMRMLKYAFNLTDDG-LVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDW  295 (302)
T ss_pred             HHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence            2566788888776543 344455689999999999999999999999987764

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=99.08  E-value=2.9e-10  Score=112.23  Aligned_cols=93  Identities=24%  Similarity=0.253  Sum_probs=78.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++.+.++++++++.+ |                                   
T Consensus       167 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~-~-----------------------------------  210 (262)
T PRK06144        167 MLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHA-P-----------------------------------  210 (262)
T ss_pred             HHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|+.++.....    .+..+.+.+..++.++++++++.+|++||+++.
T Consensus       211 ~a~~~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~  259 (262)
T PRK06144        211 LTLRATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW  259 (262)
T ss_pred             HHHHHHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence            2556678888766443    345566788899999999999999999987653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.08  E-value=1.6e-10  Score=104.97  Aligned_cols=105  Identities=23%  Similarity=0.296  Sum_probs=75.8

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKDV  227 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a  227 (535)
                      ||+|||+|.||.++|..++.+|++|++|.++++.++...+.       ......+..   ......+..++|++ .++++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~-------~~n~~~~~~---~~l~~~i~~t~dl~~a~~~a   70 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINET-------RQNPKYLPG---IKLPENIKATTDLEEALEDA   70 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHH-------TSETTTSTT---SBEETTEEEESSHHHHHTT-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh-------CCCCCCCCC---cccCcccccccCHHHHhCcc
Confidence            79999999999999999999999999999999877655421       000000110   01123566778884 58999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  265 (535)
                      |+||.++|..  ..+++++++.+++++++++++.+-++
T Consensus        71 d~IiiavPs~--~~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   71 DIIIIAVPSQ--AHREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             SEEEE-S-GG--GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             cEEEecccHH--HHHHHHHHHhhccCCCCEEEEecCCc
Confidence            9999999965  45899999999999999888887666

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.08  E-value=1.8e-10  Score=115.12  Aligned_cols=72  Identities=26%  Similarity=0.342  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395          458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR  530 (535)
Q Consensus       458 ~~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~  530 (535)
                      ...+|.||++.+++||+++++++|++ +|+|||.++++|+|||+||+.++|.+|+|++.+++..+++.+++++
T Consensus       184 ~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~  255 (282)
T PRK05808        184 APGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPIGPLALADLIGLDTCLAIMEVLYEGFGDSK  255 (282)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCCc
Confidence            34699999999999999999999998 8999999999999999999999999999999999999998887644

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.08  E-value=5e-10  Score=104.29  Aligned_cols=108  Identities=24%  Similarity=0.280  Sum_probs=74.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH--------HHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV--------RANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i--------~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      |||+|||+|.+|..+|..|+.+|++|+.+|+|++.++...+..        ...+.+.++            -+++++++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~------------~~~l~~t~   68 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS------------AGRLRATT   68 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH------------TTSEEEES
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc------------cccchhhh
Confidence            5899999999999999999999999999999999988765321        111111111            24677888


Q ss_pred             Cccc-ccCCCEEEEeccC--------ChHHHHHHHHHHHhhcCCCceeeecCCcCcHH
Q 009395          220 DYES-FKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN  268 (535)
Q Consensus       220 ~~~~-~~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  268 (535)
                      +.+. +.+||++|.|||.        |.....++.+.|.+++.++.+++ .-||+++.
T Consensus        69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV-~~STvppG  125 (185)
T PF03721_consen   69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVV-IESTVPPG  125 (185)
T ss_dssp             EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEE-ESSSSSTT
T ss_pred             hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEE-EccEEEEe
Confidence            8765 8999999999963        45567788899999999988775 45666654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PTZ00117 malate dehydrogenase; Provisional

Probab=99.07  E-value=4.1e-10  Score=114.15  Aligned_cols=125  Identities=22%  Similarity=0.362  Sum_probs=92.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+|||+|.||.++|..++..| .+|+++|++++.++....++...      .      .......++..+++++++++
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~------~------~~~~~~~~i~~~~d~~~l~~   73 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF------S------TLVGSNINILGTNNYEDIKD   73 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh------c------cccCCCeEEEeCCCHHHhCC
Confidence            48999999999999999999999 59999999987754221111100      0      00011124555678889999


Q ss_pred             CCEEEEec--cCCh------------HHHHHHHHHHHhhcCCC-ceeeecCCcCcHHHHHhhcCCC-CcEEeec
Q 009395          227 VDMVIEAI--IENV------------SLKQQIFADLEKYCPPH-CILASNTSTIDLNLIGERTYSK-DRIVGAH  284 (535)
Q Consensus       227 aDlVI~av--pe~~------------~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l~~~~~~~-~r~ig~h  284 (535)
                      ||+||+++  |.++            .+++++.+++.+++++. .|++||.+.+....+.+..+.| .|++|++
T Consensus        74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence            99999998  7766            88999999999998777 4677888877666666666555 7888875

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.06  E-value=2.7e-10  Score=113.82  Aligned_cols=70  Identities=21%  Similarity=0.257  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395          460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR  530 (535)
Q Consensus       460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~  530 (535)
                      .++.||++.+++||+++|+++|++ +++|||.+++.|+|||+||+.++|.+|+|++.++++.+++.+++++
T Consensus       190 Gfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~  259 (286)
T PRK07819        190 GFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPMGPLRLSDLVGLDTVKAIADSMYEEFKEPL  259 (286)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHHHHhccHHHHHHHHHHHHHcCCCC
Confidence            599999999999999999999997 8999999999999999999999999999999999999998887644

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=99.06  E-value=4.4e-10  Score=112.91  Aligned_cols=100  Identities=20%  Similarity=0.222  Sum_probs=81.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||++++++.|.+++++++....|                                   
T Consensus       177 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~-----------------------------------  221 (296)
T PRK08260        177 WVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSP-----------------------------------  221 (296)
T ss_pred             HHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCCh-----------------------------------
Confidence            578999999999999999999999999999999999999874112                                   


Q ss_pred             CcHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCC
Q 009395           81 THPIVCIDVVEAGVVSG-PRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP  135 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~-~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~  135 (535)
                      .+...+|++++...... .......|...+..++.++++++++.+|++||++...+
T Consensus       222 ~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~  277 (296)
T PRK08260        222 VSVALTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPG  277 (296)
T ss_pred             HHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCC
Confidence            25667888888764322 22344668888999999999999999999999876543

>PRK06223 malate dehydrogenase; Reviewed

Probab=99.06  E-value=6e-10  Score=112.81  Aligned_cols=125  Identities=23%  Similarity=0.330  Sum_probs=84.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      |+||+|||+|.||..+|..++..|+ +|+++|++++.++.....+....   .         ......+++.++++++++
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~---------~~~~~~~i~~~~d~~~~~   69 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---P---------VEGFDTKITGTNDYEDIA   69 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---h---------hcCCCcEEEeCCCHHHHC
Confidence            5799999999999999999999876 99999999887543221111110   0         001123566667888899


Q ss_pred             CCCEEEEec--------------cCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHHHHhhcCC-CCcEEee
Q 009395          226 DVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLIGERTYS-KDRIVGA  283 (535)
Q Consensus       226 ~aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l~~~~~~-~~r~ig~  283 (535)
                      +||+||+++              .++..+++++++++.+.+++.. |++||.+.+-...+....+. +.+++|+
T Consensus        70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~  143 (307)
T PRK06223         70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM  143 (307)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence            999999986              3466789999999999987653 44565554433333333332 3566665

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.05  E-value=3e-10  Score=113.84  Aligned_cols=71  Identities=18%  Similarity=0.248  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395          459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR  530 (535)
Q Consensus       459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~  530 (535)
                      ..+++||++.+++|||++++++|++ +++|||.++..|+|||+||+.++|++|+|+..++++++++.+++++
T Consensus       188 pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~  258 (287)
T PRK08293        188 PGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPMGPFGILDIVGLDTAYNITSNWAEATDDEN  258 (287)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCcCHHHHHHHhchHHHHHHHHHHHHHhCCcc
Confidence            3599999999999999999999998 9999999999999999999999999999999999999999888764

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=99.05  E-value=4.3e-10  Score=110.37  Aligned_cols=91  Identities=16%  Similarity=0.255  Sum_probs=79.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|||++++.+++.++++++++.+ |                                   
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  204 (251)
T PRK06023        161 LLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKP-P-----------------------------------  204 (251)
T ss_pred             HHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ  128 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~k  128 (535)
                      .+...+|++++... .+++.++..|.+.+..++.++++++++++|++|
T Consensus       205 ~a~~~~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~  251 (251)
T PRK06023        205 QALQIARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR  251 (251)
T ss_pred             HHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence            25556888887654 468888999999999999999999999999874

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=99.04  E-value=7.3e-10  Score=108.47  Aligned_cols=94  Identities=18%  Similarity=0.124  Sum_probs=81.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||.+   +++++.|.++|++++..+ |                                   
T Consensus       152 lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~-~-----------------------------------  192 (248)
T PRK06072        152 ILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGP-F-----------------------------------  192 (248)
T ss_pred             HHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999963   467899999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....++++.++.|.+.+..++.|+++++++.+|++||+++.
T Consensus       193 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  245 (248)
T PRK06072        193 QSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKF  245 (248)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Confidence            25667899998887778999999999999999999999999999999987753

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.03  E-value=6.5e-09  Score=106.63  Aligned_cols=176  Identities=13%  Similarity=0.109  Sum_probs=111.9

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-c
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-S  223 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~  223 (535)
                      +.++||+|||+|.||+.+|..|+++| +|++|.++++..+...+.-       .....+.. . .....++..+++.+ .
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~-------~~~~~l~~-~-~~l~~~i~~t~d~~~a   74 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNH-------RNSRYLGN-D-VVLSDTLRATTDFAEA   74 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcC-------CCcccCCC-C-cccCCCeEEECCHHHH
Confidence            34578999999999999999999999 7999999998876554210       00000100 0 00112345566664 5


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-------HHHHhhcCCCCcEEeecccCCCC---CCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-------NLIGERTYSKDRIVGAHFFSPAH---VMP  293 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-------~~l~~~~~~~~r~ig~h~~~P~~---~~~  293 (535)
                      ++++|+||.|+|  ....+++++++.++++++++++|.+.++..       +.+.+.++.....+-..|..+..   ..+
T Consensus        75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~  152 (341)
T PRK12439         75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYA  152 (341)
T ss_pred             HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCC
Confidence            789999999998  446788999999999988877777767764       24445443211122222322211   122


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhh
Q 009395          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVN  334 (535)
Q Consensus       294 lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~n  334 (535)
                      ...++.+.  +++..+.+.+++..-+..+....|..|..+-
T Consensus       153 t~~via~~--~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~  191 (341)
T PRK12439        153 AAAVLAMP--DQHLATRLSPLFRTRRFRVYTTDDVVGVEMA  191 (341)
T ss_pred             eEEEEEeC--CHHHHHHHHHHhCCCCEEEEEcCchHHHHHH
Confidence            22233332  6778888888988888777777776665443

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=99.02  E-value=7.2e-10  Score=109.55  Aligned_cols=94  Identities=23%  Similarity=0.269  Sum_probs=82.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+||+  ++.+.+.+++++++..+ |                                   
T Consensus       166 l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~-~-----------------------------------  207 (262)
T PRK07509        166 LTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRS-P-----------------------------------  207 (262)
T ss_pred             HHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            578999999999999999999995  37889999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|+.++.....++++++..|.+.+..++.++++++++.+|++||++.
T Consensus       208 ~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~  259 (262)
T PRK07509        208 DAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPK  259 (262)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence            2566788999988888889999999999999999999999999999998764

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=99.02  E-value=4.3e-10  Score=110.19  Aligned_cols=90  Identities=14%  Similarity=0.040  Sum_probs=80.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+||  +++++++.+++++++..+ |                                   
T Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~-~-----------------------------------  200 (249)
T PRK05870        159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAP-R-----------------------------------  200 (249)
T ss_pred             HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            57899999999999999999999  679999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 009395           81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ  128 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~k  128 (535)
                      .+...+|+.++.... .+++++++.|.+.+..++.|+|+++++++|+++
T Consensus       201 ~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~  249 (249)
T PRK05870        201 ELVLATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR  249 (249)
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence            266678999998877 789999999999999999999999999999874

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.02  E-value=7.7e-10  Score=91.71  Aligned_cols=91  Identities=22%  Similarity=0.242  Sum_probs=68.3

Q ss_pred             eEEEEeCChhhHHHHHHHHhCC---CcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          149 KVAILGGGLMGSGIATALILSN---YPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G---~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      ||+|||+|.||.+|+..|.++|   ++|.++ ++++++.++..++          .+           -.+...++.+.+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~   59 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE----------YG-----------VQATADDNEEAA   59 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH----------CT-----------TEEESEEHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh----------hc-----------cccccCChHHhh
Confidence            7999999999999999999999   899965 9999998765421          11           011112344668


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ++||+||.|||  +....++++++ ....++.+++|.+.
T Consensus        60 ~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a   95 (96)
T PF03807_consen   60 QEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA   95 (96)
T ss_dssp             HHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred             ccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence            89999999997  44667899999 66778888888765

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=99.02  E-value=4.1e-10  Score=110.19  Aligned_cols=92  Identities=25%  Similarity=0.370  Sum_probs=83.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|+|++++.+.+.+++++++..+ |                                   
T Consensus       154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  197 (245)
T PF00378_consen  154 LLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKP-P-----------------------------------  197 (245)
T ss_dssp             HHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             cccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCC-H-----------------------------------
Confidence            4689999999999999999999999999999999999999962 1                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ  128 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~k  128 (535)
                      .+...+|+.++.......++.+..|.+.+..++.++++++++++|++|
T Consensus       198 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK  245 (245)
T PF00378_consen  198 SALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK  245 (245)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence            155678899998888888999999999999999999999999999986

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=99.01  E-value=1.1e-09  Score=107.21  Aligned_cols=95  Identities=16%  Similarity=0.279  Sum_probs=78.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHH-HHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQW-ALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~-a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (535)
                      |+|||++++|+||+++||||+|||+.  .+.+.++ ++++++.+ |                                  
T Consensus       152 l~ltg~~~~a~eA~~~Glv~~v~~~~--~~~a~~~~a~~la~~~-p----------------------------------  194 (251)
T TIGR03189       152 LLYSGRSIDGAEGARIGLANAVAEDP--ENAALAWFDEHPAKLS-A----------------------------------  194 (251)
T ss_pred             HHHcCCCCCHHHHHHCCCcceecCcH--HHHHHHHHHHHHHhCC-H----------------------------------
Confidence            57899999999999999999999754  3567776 57888752 2                                  


Q ss_pred             CCcHHHHHHHHHHhhcCChHHHH-HHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           80 LTHPIVCIDVVEAGVVSGPRAGL-QKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        80 ~~A~~~~~~~i~~~~~~~~~~~l-~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                       .+...+|++++.....++++++ ..|.+.+..++.|+|+++++++|++||+++.
T Consensus       195 -~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  248 (251)
T TIGR03189       195 -SSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW  248 (251)
T ss_pred             -HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence             2566788998887777777776 4788889999999999999999999998754

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.01  E-value=7.3e-09  Score=109.36  Aligned_cols=177  Identities=15%  Similarity=0.165  Sum_probs=119.5

Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----ccCCCEEEEe
Q 009395          158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----FKDVDMVIEA  233 (535)
Q Consensus       158 mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----~~~aDlVI~a  233 (535)
                      ||.+||..|+++|++|++|||++++.+...+.          .|. .        ..+....++++    ++.+|+||.|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~----------~g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m   61 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE----------EGK-G--------KKIVPAYTLEEFVASLEKPRKILLM   61 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh----------hCC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence            89999999999999999999999998765421          010 0        01223334433    3358999999


Q ss_pred             ccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--HHHhhcCCCCcEEeeccc-CCCCC-------CCEEEEEeCCCC
Q 009395          234 IIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFF-SPAHV-------MPLLEIVRTNQT  303 (535)
Q Consensus       234 vpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~-~P~~~-------~~lveiv~~~~t  303 (535)
                      ||....+ .+++..+.+.+.++.|++..+++.+.+  ..++.+..    .|+||+ .|++.       ++  .+++|.  
T Consensus        62 v~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~G~--siM~GG--  132 (459)
T PRK09287         62 VKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALHGP--SIMPGG--  132 (459)
T ss_pred             CCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhcCC--EEEEeC--
Confidence            9987554 567788999999898887655443332  23333321    255655 24432       33  344442  


Q ss_pred             CHHHHHHHHHHHHhcCCce-------EEeCCc-ccc---hh-hhhHHH---HHHHHHHHHH--cCCCHHHHHHHHH
Q 009395          304 SPQVIVDLLDIGKKIKKTP-------IVVGNC-TGF---AV-NRMFFP---YTQAAFLLVE--RGTDLYLIDRAIT  362 (535)
Q Consensus       304 s~e~~~~~~~l~~~lGk~~-------i~v~d~-~G~---i~-nri~~~---~~~ea~~l~~--~G~~~~~ID~a~~  362 (535)
                      ++++++.++++++.++...       .++++. .|.   ++ |-+.+.   .+.|++.+++  .|++++++-+++.
T Consensus       133 ~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~  208 (459)
T PRK09287        133 QKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA  208 (459)
T ss_pred             CHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            6899999999999999876       778753 343   23 444443   4789999987  4899999988875

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.00  E-value=4.5e-10  Score=112.80  Aligned_cols=70  Identities=21%  Similarity=0.157  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395          460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR  530 (535)
Q Consensus       460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~  530 (535)
                      .++.||++.+++|||++++++|++ +++|||.++..|+|||+|||.++|++|+|+..++++.+++.+++++
T Consensus       189 gfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~  258 (291)
T PRK06035        189 GFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPMGPFELMDIIGIDTVYHIAEYLYEETGDPQ  258 (291)
T ss_pred             CeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCccCHHHHHHHhhHHHHHHHHHHHHHHcCCCc
Confidence            589999999999999999999998 9999999999999999999999999999999999999999887654

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=99.00  E-value=9.5e-10  Score=108.96  Aligned_cols=93  Identities=19%  Similarity=0.158  Sum_probs=74.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       170 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  213 (268)
T PRK07327        170 YLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGS-Q-----------------------------------  213 (268)
T ss_pred             HHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~---~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++....   .+++..+..|    ..++.|+++++++.+|++||+++.
T Consensus       214 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~~  265 (268)
T PRK07327        214 TAIRWTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPDF  265 (268)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCCC
Confidence            255567888875422   2344444444    246789999999999999987764

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.00  E-value=1.5e-08  Score=93.99  Aligned_cols=153  Identities=22%  Similarity=0.249  Sum_probs=103.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      |++++|+|+|+||+++|..|+++||+|++-.++. ++.+.+.+.                     ....++..++.++++
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~---------------------l~~~i~~~~~~dA~~   59 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA---------------------LGPLITGGSNEDAAA   59 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh---------------------hccccccCChHHHHh
Confidence            5789999999999999999999999999996654 444433221                     112345556677889


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC----------------cHH-HHHhhcCCCCcEEeecccC-
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI----------------DLN-LIGERTYSKDRIVGAHFFS-  287 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~----------------~~~-~l~~~~~~~~r~ig~h~~~-  287 (535)
                      .||+||.+||-  .....+++++...+. +.|+++.|-.+                +.+ .+++.++.. +++.. |++ 
T Consensus        60 ~aDVVvLAVP~--~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkA-Fn~i  134 (211)
T COG2085          60 LADVVVLAVPF--EAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKA-FNTI  134 (211)
T ss_pred             cCCEEEEeccH--HHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhh-hccc
Confidence            99999999983  455788888887776 66776555431                112 344455444 44432 221 


Q ss_pred             C-------CCC-CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          288 P-------AHV-MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       288 P-------~~~-~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                      |       .+. .+....+.++  +.+..+.+.++.+.+|..++.++.
T Consensus       135 ~a~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~  180 (211)
T COG2085         135 PAAVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP  180 (211)
T ss_pred             CHHHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence            1       111 2344445553  788999999999999999999873

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.99  E-value=1.8e-08  Score=106.91  Aligned_cols=204  Identities=16%  Similarity=0.210  Sum_probs=126.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          147 VKKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVR----ANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~----~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      ++||+|||+|.+|..+|..|+.+|  ++|+++|+++++++...+...    ..++..+.++         .-.+++++++
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~   71 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD   71 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence            368999999999999999999885  789999999999887653311    1111111110         1124778888


Q ss_pred             cc-cccCCCEEEEeccC-------------ChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEee
Q 009395          221 YE-SFKDVDMVIEAIIE-------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA  283 (535)
Q Consensus       221 ~~-~~~~aDlVI~avpe-------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~  283 (535)
                      ++ .+++||++|.|||.             |+.....+.++|.++++++++|+ ..||+++.   .+...+....+  |.
T Consensus        72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv-~~STvp~Gtt~~~~~~l~~~~~--g~  148 (473)
T PLN02353         72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GI  148 (473)
T ss_pred             HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEE-EeCCCCCChHHHHHHHHHhhCC--CC
Confidence            75 58999999999952             33366788889999999988765 45555543   33332211100  11


Q ss_pred             cc---cCCCCC---------CCEEEEE-eCC--CCCHHHHHHHHHHHHhcCC-ceEEeCCc--c--cchhhhhH----HH
Q 009395          284 HF---FSPAHV---------MPLLEIV-RTN--QTSPQVIVDLLDIGKKIKK-TPIVVGNC--T--GFAVNRMF----FP  339 (535)
Q Consensus       284 h~---~~P~~~---------~~lveiv-~~~--~ts~e~~~~~~~l~~~lGk-~~i~v~d~--~--G~i~nri~----~~  339 (535)
                      .|   ++|-..         ...-.++ .+.  ...++..+.+.+++..+-+ .++.+.+.  .  .-++.+.+    .+
T Consensus       149 ~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Ia  228 (473)
T PLN02353        149 NFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRIS  228 (473)
T ss_pred             CeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHH
Confidence            11   133211         1111233 432  2225678888888888642 45555432  1  12333332    35


Q ss_pred             HHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          340 YTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       340 ~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      ++||-..+.+ .|+|..+|-.++.
T Consensus       229 f~NEla~lce~~giD~~eV~~~~~  252 (473)
T PLN02353        229 SVNAMSALCEATGADVSQVSHAVG  252 (473)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHhC
Confidence            6899888876 5899999988876

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.97  E-value=8.9e-10  Score=110.49  Aligned_cols=68  Identities=26%  Similarity=0.231  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcC
Q 009395          460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQ  528 (535)
Q Consensus       460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~  528 (535)
                      .++.||++.+++|||++|+++|++ +++|||.++++|+|||+||+.++|.+|+|++.++.+.++..+++
T Consensus       185 Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~  252 (288)
T PRK09260        185 GFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPMGPLELGDLVGLDTRLNNLKYLHETLGE  252 (288)
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence            599999999999999999999997 99999999999999999999999999999999999999887764

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=98.97  E-value=7.3e-10  Score=113.25  Aligned_cols=130  Identities=16%  Similarity=0.130  Sum_probs=82.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHH------------HhhccCCCcchhh-------cccCCCCCchH
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL------------DILEHRRPWVATL-------YKTDKIEPLGE   61 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~------------~la~~~~p~~~~~-------~~~~~~~~~~~   61 (535)
                      |+|||++++|+||+++||||+|||++++.+...++++            .+.....+. +..       .....++.. .
T Consensus       163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~-~  240 (342)
T PRK05617        163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPA-PASELAAQRAWIDECFAGD-T  240 (342)
T ss_pred             HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCC-CcchhHHHHHHHHHHhCCC-C
Confidence            5789999999999999999999999988766333221            011100000 000       000000000 0


Q ss_pred             HHHHHHH--------HHHHHHHh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHh-hc-cc
Q 009395           62 AREIFKF--------ARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQ-RG  130 (535)
Q Consensus        62 ~~~~~~~--------~~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~-~k-r~  130 (535)
                      -...+..        +.+.+.+- ..++.+...+|++++.+...+++++++.|...+..++.++|+++++++|+ +| |+
T Consensus       241 ~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~  320 (342)
T PRK05617        241 VEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRN  320 (342)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCC
Confidence            0011111        12222221 23567899999999998888999999999999999999999999999997 66 54


Q ss_pred             CC
Q 009395          131 TS  132 (535)
Q Consensus       131 ~~  132 (535)
                      ++
T Consensus       321 p~  322 (342)
T PRK05617        321 PK  322 (342)
T ss_pred             CC
Confidence            43

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=98.97  E-value=1.6e-09  Score=106.63  Aligned_cols=94  Identities=16%  Similarity=0.078  Sum_probs=78.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||+|||+++.  .+.+++++++..+ |                                   
T Consensus       159 l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~-p-----------------------------------  200 (255)
T PRK07112        159 MTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLN-K-----------------------------------  200 (255)
T ss_pred             HHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999987653  5777888888752 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.. ...++++++.|.+.+..++.|+|+++++.+|++||++..
T Consensus       201 ~a~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~  252 (255)
T PRK07112        201 AAVARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPW  252 (255)
T ss_pred             HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence            2566788888765 446788999999999999999999999999999987643

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=98.96  E-value=1.7e-09  Score=106.67  Aligned_cols=94  Identities=19%  Similarity=0.255  Sum_probs=83.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|+|++++|+||+++||||++++  ++.+.+.+++++++..+ |                                   
T Consensus       164 l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~-~-----------------------------------  205 (260)
T PRK07827        164 YYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGS-P-----------------------------------  205 (260)
T ss_pred             HHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            578999999999999999999974  58999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++......+++.++.|.+.+..++.++++++++.+|++||+++
T Consensus       206 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~  257 (260)
T PRK07827        206 QGLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPR  257 (260)
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCC
Confidence            2666789999988888889999999999999999999999999999988754

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=98.95  E-value=2.5e-09  Score=104.40  Aligned_cols=91  Identities=19%  Similarity=0.234  Sum_probs=77.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|++   + +.+.++++++++.+ |                                   
T Consensus       150 l~ltg~~~~a~eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~-~-----------------------------------  189 (243)
T PRK07854        150 MLLGAEKLTAEQALATGMANRIGT---L-ADAQAWAAEIAGLA-P-----------------------------------  189 (243)
T ss_pred             HHHcCCCcCHHHHHHCCCcccccC---H-HHHHHHHHHHHhCC-H-----------------------------------
Confidence            578999999999999999999975   2 38899999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|+.++..  .+++++++.|.+.+..++.|+++++++.+|++||++..
T Consensus       190 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~  240 (243)
T PRK07854        190 LALQHAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF  240 (243)
T ss_pred             HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence            2566788888765  56889999999999999999999999999999987653

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.94  E-value=1.6e-09  Score=109.11  Aligned_cols=71  Identities=24%  Similarity=0.282  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395          459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR  530 (535)
Q Consensus       459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~  530 (535)
                      ..++.||++.+++||+++++++|++ +++|||.++++|+|||+||+.++|.+|+|++.++++.++..+++++
T Consensus       186 ~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~  256 (295)
T PLN02545        186 PGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLSIMKVLHEGLGDSK  256 (295)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCc
Confidence            3589999999999999999999998 8999999999999999999999999999999999999998887643

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.92  E-value=5e-09  Score=90.78  Aligned_cols=115  Identities=18%  Similarity=0.221  Sum_probs=71.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      -.||+|||+|.+|..++..|.++|++|..+ .++.+..+++...                      +......+..+.+.
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~----------------------~~~~~~~~~~~~~~   67 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAF----------------------IGAGAILDLEEILR   67 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGC
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccc----------------------cccccccccccccc
Confidence            468999999999999999999999998764 7777666554321                      11111222235578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhh--cCCCceeeecCCcCcHHHHHhhcCCCCcEEeecc
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKY--CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF  285 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~--~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~  285 (535)
                      ++|++|.+||++  ....+.++|...  ..++.+|+=.+.+.+.+-|............+||
T Consensus        68 ~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP  127 (127)
T PF10727_consen   68 DADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP  127 (127)
T ss_dssp             C-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred             cCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence            999999999987  457888888876  6788877643444566555554444556777776

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=98.88  E-value=5e-09  Score=102.66  Aligned_cols=90  Identities=17%  Similarity=0.207  Sum_probs=80.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++.+.++++++++.+ |                                   
T Consensus       158 llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  201 (249)
T PRK07110        158 MLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKP-R-----------------------------------  201 (249)
T ss_pred             HHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF  126 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~  126 (535)
                      .+...+|+.++.....+++++++.|...+..++.|++.++++....
T Consensus       202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~  247 (249)
T PRK07110        202 HSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY  247 (249)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence            2566789999988888999999999999999999999999988643

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.88  E-value=3.2e-09  Score=106.68  Aligned_cols=70  Identities=23%  Similarity=0.277  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395          460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR  530 (535)
Q Consensus       460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~  530 (535)
                      -+++||++.+++||+++++++|++ +++|||.++++|+|||+||+.++|.+|+|+..++++.++..+++++
T Consensus       187 g~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~  256 (292)
T PRK07530        187 AFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPMGPLELADFIGLDTCLSIMQVLHDGLADSK  256 (292)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCCc
Confidence            589999999999999999999998 9999999999999999999999999999999999999998876543

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=98.84  E-value=3.6e-09  Score=109.51  Aligned_cols=131  Identities=16%  Similarity=0.189  Sum_probs=80.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHH----------HHhhccC-CCcch-------hh-cccCCCCCchH
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA----------LDILEHR-RPWVA-------TL-YKTDKIEPLGE   61 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a----------~~la~~~-~p~~~-------~~-~~~~~~~~~~~   61 (535)
                      |+|||++++|++|+++||||+|||++++.+.+.++.          .++...- .++..       .. .....++.. .
T Consensus       168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~  246 (379)
T PLN02874        168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD-T  246 (379)
T ss_pred             HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC-C
Confidence            578999999999999999999999988876322221          1111100 00000       00 000000000 0


Q ss_pred             HHHHHHH------------HHHHHHHh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Q 009395           62 AREIFKF------------ARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVHIF  125 (535)
Q Consensus        62 ~~~~~~~------------~~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~---s~e~~~~i~aF  125 (535)
                      ....+..            +.+.+..- .+++.+...+|++++.+...+++++++.|......++.   ++|+++++++|
T Consensus       247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af  326 (379)
T PLN02874        247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL  326 (379)
T ss_pred             HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence            0111111            11222221 23566889999999998888999999999888888877   99999999999


Q ss_pred             h-hc-ccCC
Q 009395          126 F-AQ-RGTS  132 (535)
Q Consensus       126 ~-~k-r~~~  132 (535)
                      + +| |+++
T Consensus       327 lidK~r~P~  335 (379)
T PLN02874        327 VIDKDNAPK  335 (379)
T ss_pred             EEcCCCCCC
Confidence            7 77 5444

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=98.84  E-value=8.7e-09  Score=101.35  Aligned_cols=95  Identities=24%  Similarity=0.256  Sum_probs=82.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||++||++++++.|.+++++++..+ |                                   
T Consensus       158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  201 (258)
T PRK06190        158 MSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNN-P-----------------------------------  201 (258)
T ss_pred             HHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcC---HHHHHHHHHHhhcccC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS---ETCKSLVHIFFAQRGT  131 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s---~e~~~~i~aF~~kr~~  131 (535)
                      .+...+|++++.....+++++++.|...+..++.|   ....+....|..+-++
T Consensus       202 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  255 (258)
T PRK06190        202 AAVRALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGRA  255 (258)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhh
Confidence            26667899999888888999999999999999988   6677777777775443

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=98.84  E-value=2.1e-09  Score=97.93  Aligned_cols=95  Identities=23%  Similarity=0.314  Sum_probs=66.8

Q ss_pred             ccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCCC
Q 009395            2 MLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNLT   81 (535)
Q Consensus         2 lltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (535)
                      .+.+|.++|+||++|||||.|||.++|++++.+||+++.+++ |.                                   
T Consensus       181 wfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kS-P~-----------------------------------  224 (282)
T COG0447         181 WFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKS-PT-----------------------------------  224 (282)
T ss_pred             hhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcC-hH-----------------------------------
Confidence            467999999999999999999999999999999999999874 41                                   


Q ss_pred             cHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           82 HPIVCIDVVEAGVVSGPRAGLQK-EAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        82 A~~~~~~~i~~~~~~~~~~~l~~-E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      |....|.+++..- .+ -+++.. --.+-.-..+|+|++|+..+|++||++...
T Consensus       225 AlR~LK~Afnad~-DG-laG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf~  276 (282)
T COG0447         225 ALRMLKAAFNADC-DG-LAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDFS  276 (282)
T ss_pred             HHHHHHHHhcCCC-ch-hhHHHHhcccceEEEEechhhhhhHHHHhhccCCChH
Confidence            3333333333211 11 122221 111112245899999999999999998653

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.83  E-value=2.3e-07  Score=86.59  Aligned_cols=189  Identities=14%  Similarity=0.175  Sum_probs=126.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      ++|+.||+|.||..++..|.+.|++|+.||+|+++.+.+.           ..|.......+..         ...+..-
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~-----------~~ga~~a~sl~el---------~~~L~~p   60 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELK-----------DEGATGAASLDEL---------VAKLSAP   60 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------hcCCccccCHHHH---------HHhcCCC
Confidence            4799999999999999999999999999999999987664           2231110001111         1234555


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCC-CC----C--CCEEEEEeC
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSP-AH----V--MPLLEIVRT  300 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P-~~----~--~~lveiv~~  300 (535)
                      -.|-..||-. ++..+++.++.+.+.++.+|+.-..+.--+.+...-..  .-.|+||+.- .+    .  ....-++.|
T Consensus        61 r~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l--~~kgi~flD~GTSGG~~G~~~G~~lMiGG  137 (300)
T COG1023          61 RIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL--AEKGIHFLDVGTSGGVWGAERGYCLMIGG  137 (300)
T ss_pred             cEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH--HhcCCeEEeccCCCCchhhhcCceEEecC
Confidence            7788888853 35688999999999999988876655544333321111  1248888742 11    1  233445556


Q ss_pred             CCCCHHHHHHHHHHHHhcCCc---eEEeCC-cccch----hhhhHHH---HHHHHHHHHHcC---CCHHHHHHHHH
Q 009395          301 NQTSPQVIVDLLDIGKKIKKT---PIVVGN-CTGFA----VNRMFFP---YTQAAFLLVERG---TDLYLIDRAIT  362 (535)
Q Consensus       301 ~~ts~e~~~~~~~l~~~lGk~---~i~v~d-~~G~i----~nri~~~---~~~ea~~l~~~G---~~~~~ID~a~~  362 (535)
                         +++.++.+.++|+.+.--   -.+++. ..|.+    -|-|=+.   .+.|.+.++++.   +|.++|-+.++
T Consensus       138 ---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~  210 (300)
T COG1023         138 ---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWN  210 (300)
T ss_pred             ---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence               689999999999987642   245554 34543    3555443   368899999864   48888888877

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.83  E-value=6.8e-08  Score=98.39  Aligned_cols=165  Identities=16%  Similarity=0.060  Sum_probs=102.5

Q ss_pred             eEEEEeCChhhHHHHHHHHhCC--------CcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHhhhcc
Q 009395          149 KVAILGGGLMGSGIATALILSN--------YPVILKEV-----NEKFLEAGIGRVRANLQSRVKK-GKMTQEKFEKTISL  214 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G--------~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~  214 (535)
                      ||+|||+|.||.++|..++.+|        ++|++|.+     +++..+...+    .    .+. ..++.   -....+
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~----~----~~n~~ylpg---i~Lp~~   69 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINT----T----HENVKYLPG---IKLPAN   69 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHh----c----CCCccccCC---CcCCCC
Confidence            6999999999999999999999        99999998     4443322211    1    000 00100   011235


Q ss_pred             cccccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--------H-HHhhcCCCCcEEeec
Q 009395          215 LTGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--------L-IGERTYSKDRIVGAH  284 (535)
Q Consensus       215 i~~~~~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--------~-l~~~~~~~~r~ig~h  284 (535)
                      +..++|++ .+++||+||.+||.  ...+++++++.++++++.+++|.+-++..+        + +.+.+..  ++.-+ 
T Consensus        70 i~at~dl~eal~~ADiIIlAVPs--~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~~~l-  144 (342)
T TIGR03376        70 LVAVPDLVEAAKGADILVFVIPH--QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PCGVL-  144 (342)
T ss_pred             eEEECCHHHHHhcCCEEEEECCh--HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--CeEEe-
Confidence            66777875 57999999999985  467889999999998888888887766543        2 2223322  21111 


Q ss_pred             ccCCCC------CCCEEEEEeCCCCC--HHHHHHHHHHHHhcCCceEEeCCccc
Q 009395          285 FFSPAH------VMPLLEIVRTNQTS--PQVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       285 ~~~P~~------~~~lveiv~~~~ts--~e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                       .-|..      ..+...++.+...+  .+..+.+++++..--.+++...|..|
T Consensus       145 -sGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G  197 (342)
T TIGR03376       145 -SGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAG  197 (342)
T ss_pred             -eCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence             12221      12233344443222  77888888888764445555567555

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.82  E-value=3e-08  Score=101.69  Aligned_cols=173  Identities=14%  Similarity=0.046  Sum_probs=104.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSN-------YPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G-------~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      +||+|||+|.||+++|..++++|       ++|.+|.++++. -+...+.++..   ......++.-   ....++..++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~---~~N~~ylp~~---~Lp~ni~~ts   85 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTK---HENVKYLPGI---KLPDNIVAVS   85 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhc---CCCcccCCCC---cCCCceEEec
Confidence            68999999999999999999998       799999999762 11111112110   0000111110   1224677777


Q ss_pred             Ccc-cccCCCEEEEeccCChHHHHHHHHHHHh--hcCCCceeeecCCcCcH--------HHH-HhhcCCCCcEEeecccC
Q 009395          220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEK--YCPPHCILASNTSTIDL--------NLI-GERTYSKDRIVGAHFFS  287 (535)
Q Consensus       220 ~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~--~~~~~~ii~s~tS~~~~--------~~l-~~~~~~~~r~ig~h~~~  287 (535)
                      |++ .+++||+||.+||  ++..+++++++.+  .++++++++|.+-++.+        +++ .+.++.+--++. -|..
T Consensus        86 dl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~Ls-GPs~  162 (365)
T PTZ00345         86 DLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALS-GANV  162 (365)
T ss_pred             CHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEE-CCCH
Confidence            774 5899999999998  4577899999988  77777788877766543        322 223322211111 1111


Q ss_pred             CC---CCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccc
Q 009395          288 PA---HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF  331 (535)
Q Consensus       288 P~---~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~  331 (535)
                      ..   ...+...++.+  .+.+....++++|..--.+++...|..|.
T Consensus       163 A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~Gv  207 (365)
T PTZ00345        163 ANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIGV  207 (365)
T ss_pred             HHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCcccc
Confidence            11   11233333344  26788888888887655555565675553

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.82  E-value=5.1e-08  Score=99.61  Aligned_cols=171  Identities=16%  Similarity=0.162  Sum_probs=101.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHhhhcccccccCccc-c
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK--MTQEKFEKTISLLTGVLDYES-F  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~--~~~~~~~~~~~~i~~~~~~~~-~  224 (535)
                      +||+|||+|.||+.+|..|+++|++|++|+++++.++...+.         ..+.  +...   .....+..+++.++ +
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~---------~~~~~~~~~~---~~~~~i~~~~~~~~~~   68 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK---------RKNLKYLPTC---HLPDNISVKSAIDEVL   68 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc---------CCCcccCCCC---cCCCCeEEeCCHHHHH
Confidence            379999999999999999999999999999998876654321         0000  1000   00123344555543 4


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHh-hcCCCceeeecCCcCcH-------HHHHhhcCCCCcEEeecccCCC------
Q 009395          225 -KDVDMVIEAIIENVSLKQQIFADLEK-YCPPHCILASNTSTIDL-------NLIGERTYSKDRIVGAHFFSPA------  289 (535)
Q Consensus       225 -~~aDlVI~avpe~~~~k~~v~~~l~~-~~~~~~ii~s~tS~~~~-------~~l~~~~~~~~r~ig~h~~~P~------  289 (535)
                       .++|+||.|||.  ....++++++.+ ++++++.+++.+.++..       +.+...++.. ++..  +..|.      
T Consensus        69 ~~~~Dliiiavks--~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~-~~~~--~~Gp~~a~~~~  143 (326)
T PRK14620         69 SDNATCIILAVPT--QQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNN-PIAI--LSGPSFAKEIA  143 (326)
T ss_pred             hCCCCEEEEEeCH--HHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCC-ceEe--ecCCcHHHHHH
Confidence             589999999984  356788999988 88888766666666633       3344444321 2211  01122      


Q ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhH
Q 009395          290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF  337 (535)
Q Consensus       290 ~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~  337 (535)
                      ...+....+.+  .+.+..+.+.+++..-+.......|..|..+...+
T Consensus       144 ~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~  189 (326)
T PRK14620        144 EKLPCSIVLAG--QNETLGSSLISKLSNENLKIIYSQDIIGVQIGAAL  189 (326)
T ss_pred             cCCCcEEEEec--CCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHH
Confidence            11121112233  34555666666666666555566676665543333

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=98.80  E-value=1.6e-08  Score=99.65  Aligned_cols=93  Identities=30%  Similarity=0.424  Sum_probs=80.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (535)
                      |++||+.++|+||+++||||++|++ +++++.+.++++++++.  |                                  
T Consensus       162 l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~~--~----------------------------------  205 (257)
T COG1024         162 LLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAAP--P----------------------------------  205 (257)
T ss_pred             HHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHccC--H----------------------------------
Confidence            5799999999999999999999985 69999999999998871  2                                  


Q ss_pred             CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccC
Q 009395           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT  131 (535)
Q Consensus        80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~  131 (535)
                       .+...+|+.++.+...++++.+..|...+...+.++++++++++|++ |++
T Consensus       206 -~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p  255 (257)
T COG1024         206 -LALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKP  255 (257)
T ss_pred             -HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCC
Confidence             15567888888887666889999999999998899999999999999 544

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.79  E-value=2.4e-07  Score=94.12  Aligned_cols=174  Identities=10%  Similarity=0.124  Sum_probs=104.2

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      .+.+||+|||+|.||+.+|..|+++|++|+++.+++.  +...           +.|. +....-+.....+...++.+.
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~   69 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVR-----------ENGLQVDSVHGDFHLPPVQAYRSAED   69 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHH-----------hCCeEEEeCCCCeeecCceEEcchhh
Confidence            3456899999999999999999999999999999753  2211           1111 000000000011223344455


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEEee-ccc-----CCCC---C-C
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGA-HFF-----SPAH---V-M  292 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~-h~~-----~P~~---~-~  292 (535)
                      ...+|+||.|++...  ..++++.+.+.+.+++++++..-++.. +.+.+.++. .++++. .++     .|..   . .
T Consensus        70 ~~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~-~~v~~g~~~~~a~~~~pg~v~~~~~  146 (313)
T PRK06249         70 MPPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA-EHLLGGLCFICSNRVGPGVIHHLAY  146 (313)
T ss_pred             cCCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEeeeEeEecCCCeEEEECCC
Confidence            778999999998542  256788888888888877777767765 455555543 344442 222     3321   1 1


Q ss_pred             CEEEEEeCCCCC-----HHHHHHHHHHHHhcCCceEEeCCcccchhh
Q 009395          293 PLLEIVRTNQTS-----PQVIVDLLDIGKKIKKTPIVVGNCTGFAVN  334 (535)
Q Consensus       293 ~lveiv~~~~ts-----~e~~~~~~~l~~~lGk~~i~v~d~~G~i~n  334 (535)
                      .-+.+-..+..+     .+..+.+.++++..|.......|....+..
T Consensus       147 g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~  193 (313)
T PRK06249        147 GRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQ  193 (313)
T ss_pred             CcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHh
Confidence            112222222222     466777888888888777666665554433

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.78  E-value=1.4e-07  Score=88.25  Aligned_cols=114  Identities=11%  Similarity=0.063  Sum_probs=82.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+|||+ |.||.-++..|.++|++|+                                                 +.+
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------------------------~~~   31 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------------------------IKK   31 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------------------------ECC
Confidence            47999999 9999999999999999985                                                 146


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCC-----CEEEEEeCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM-----PLLEIVRTN  301 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~-----~lveiv~~~  301 (535)
                      ||+||.|+|.+  ...++++++.      .++++.+|...  .+.+.   ..+|+|.||+..+...     ..+.+ ..+
T Consensus        32 ~DlVilavPv~--~~~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~   97 (197)
T PRK06444         32 ADHAFLSVPID--AALNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-IND   97 (197)
T ss_pred             CCEEEEeCCHH--HHHHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEE-ECC
Confidence            89999999954  4456666553      25767777654  23332   3479999998753321     23333 356


Q ss_pred             CCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          302 QTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       302 ~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      .++++.++.+.++++  |..++.+.
T Consensus        98 ~~~~~~~~~~~~l~~--G~~~~~~t  120 (197)
T PRK06444         98 ISRDNYLNEINEMFR--GYHFVEMT  120 (197)
T ss_pred             CCCHHHHHHHHHHHc--CCEEEEeC
Confidence            778888899999988  77777665

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.78  E-value=2.2e-08  Score=100.78  Aligned_cols=123  Identities=20%  Similarity=0.286  Sum_probs=78.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+|||+|.||.++|..++.+|+ +|+++|++++.. .+..  ...++    .+     .......+++.+++++++++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~-~g~a--~d~~~----~~-----~~~~~~~~i~~t~d~~~~~~   69 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIP-QGKA--LDMYE----AS-----PVGGFDTKVTGTNNYADTAN   69 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChh-HHHH--Hhhhh----hh-----hccCCCcEEEecCCHHHhCC
Confidence            489999999999999999999887 899999976643 2221  01111    11     01111246777788888999


Q ss_pred             CCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceee--ecCCcCcHHHHHhhcCC-CCcEEee
Q 009395          227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTYS-KDRIVGA  283 (535)
Q Consensus       227 aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~~~-~~r~ig~  283 (535)
                      ||+||.++.              .+..+.+++.+++.++.+ +++++  ||-..+-...+.+..+. +.|++|+
T Consensus        70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~  142 (305)
T TIGR01763        70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQ  142 (305)
T ss_pred             CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEecCcHHHHHHHHHHHHCcCHHHEEEe
Confidence            999999986              244566777777888764 44333  44332222223333233 3567775

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.78  E-value=2.3e-07  Score=90.61  Aligned_cols=166  Identities=17%  Similarity=0.133  Sum_probs=115.8

Q ss_pred             CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccCCCEEEEeccCChHHHHHHHHHHH
Q 009395          171 YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLE  249 (535)
Q Consensus       171 ~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVI~avpe~~~~k~~v~~~l~  249 (535)
                      ++|++++|++++++...+.          .|             +....+. +.+.+||+||.||+  +....++++++.
T Consensus        10 ~~I~v~~R~~e~~~~l~~~----------~g-------------~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l~   64 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKE----------LG-------------IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSELK   64 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHH----------cC-------------cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHHh
Confidence            5899999999886544211          01             1122333 44678999999998  556788899988


Q ss_pred             hhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCE-EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc
Q 009395          250 KYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL-LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC  328 (535)
Q Consensus       250 ~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~l-veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~  328 (535)
                      +.+.++.+|+|.+++++++++.+.++...+++.++|+.|...... .-+.+++.++++..+.+..+|..+|+...+ .+.
T Consensus        65 ~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E~  143 (245)
T TIGR00112        65 SEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PEA  143 (245)
T ss_pred             hhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CHH
Confidence            877778899999999999999998865568999999988876544 445578888999999999999999976544 331


Q ss_pred             --ccch-hhhh---HHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 009395          329 --TGFA-VNRM---FFPYTQAAF--LLVERGTDLYLIDRAIT  362 (535)
Q Consensus       329 --~G~i-~nri---~~~~~~ea~--~l~~~G~~~~~ID~a~~  362 (535)
                        ..+. +.-.   +..++.+++  ..+..|+++++-.+++.
T Consensus       144 ~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~  185 (245)
T TIGR00112       144 LMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAA  185 (245)
T ss_pred             HcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence              1111 1111   112223332  23457889988888765

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.75  E-value=2.1e-07  Score=94.06  Aligned_cols=163  Identities=18%  Similarity=0.138  Sum_probs=98.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +||+|||+|.||+.+|..|+++|++|++++++++.++...+           .|. .-.+ ......+..+++.+.+.++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~-----------~g~-~~~~-~~~~~~~~~~~~~~~~~~~   67 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE-----------NGL-RLED-GEITVPVLAADDPAELGPQ   67 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH-----------cCC-cccC-CceeecccCCCChhHcCCC
Confidence            47999999999999999999999999999998877655432           121 0000 0000112223444445899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc-HHHHHhhcCCCCcEEe-ecc-----cCCCC---CC-CEEE
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVG-AHF-----FSPAH---VM-PLLE  296 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~ig-~h~-----~~P~~---~~-~lve  296 (535)
                      |+||.|++..  ....+++.+.+.+.++++|++...++. .+.+...++. .++++ ..+     ..|..   .. ..+.
T Consensus        68 d~vila~k~~--~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~p~~v~~~~~g~~~  144 (304)
T PRK06522         68 DLVILAVKAY--QLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGP-ERVLGGVVTHAAELEGPGVVRHTGGGRLK  144 (304)
T ss_pred             CEEEEecccc--cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCc-ccEEEEEEEEeeEecCCCEEEEcCCCCEE
Confidence            9999999854  347788999998888887777777775 4455555532 23332 211     12321   11 1122


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                      +...+. +.+..+.+.+++...|.......|
T Consensus       145 ig~~~~-~~~~~~~l~~~l~~~~~~~~~~~d  174 (304)
T PRK06522        145 IGEPDG-ESAAAEALADLLNAAGLDVEWSPD  174 (304)
T ss_pred             EeCCCC-CcHHHHHHHHHHHhcCCCCCCChH
Confidence            222222 224456677777777765444444

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.72  E-value=2.1e-08  Score=101.12  Aligned_cols=67  Identities=19%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCC---CCcchhhhhcCcch-HHHHHHHHHhHh
Q 009395          459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP---PYRFVTFIHRGFSK-SSSCFKNLLCYF  526 (535)
Q Consensus       459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~---~~~~g~~~~~G~~~-~~~~~~~~~~~~  526 (535)
                      ..||.|||+.+++|||++++++|++ |++|||.+|.+|+|+|   +|||.++|++|+|. +.+.++++...+
T Consensus       187 pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~  257 (321)
T PRK07066        187 PGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPAL  257 (321)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhh
Confidence            4599999999999999999999999 9999999999999998   89999999999997 555556654443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.72  E-value=1.7e-07  Score=94.69  Aligned_cols=165  Identities=16%  Similarity=0.143  Sum_probs=98.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCccc-cc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYES-FK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~-~~  225 (535)
                      +||+|||+|.||..+|..|+++|++|+++++ ++.++...+           .|. +.....+.. -.....++.+. ..
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~-----------~g~~~~~~~~~~~-~~~~~~~~~~~~~~   67 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE-----------RGLVIRSDHGDAV-VPGPVITDPEELTG   67 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh-----------CCeEEEeCCCeEE-ecceeecCHHHccC
Confidence            4799999999999999999999999999999 766654321           111 000000000 00112334443 48


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc-HHHHHhhcCCCCcEE-eeccc-----CCCCC----CCE
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIV-GAHFF-----SPAHV----MPL  294 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~i-g~h~~-----~P~~~----~~l  294 (535)
                      ++|+||.|++..  ...++++++.+.++++++|++..-++. .+.+...++. .+++ |..++     .|-..    ...
T Consensus        68 ~~d~vilavk~~--~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~  144 (305)
T PRK12921         68 PFDLVILAVKAY--QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHR  144 (305)
T ss_pred             CCCEEEEEeccc--CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCc
Confidence            899999999854  346778888888888887776666665 3455555532 2444 23332     22111    111


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc
Q 009395          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC  328 (535)
Q Consensus       295 veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~  328 (535)
                      +.+-..+....+..+.+.+.+...|.......|.
T Consensus       145 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di  178 (305)
T PRK12921        145 LTFGEIPGQRSERTRAVRDALAGARLEVVLSENI  178 (305)
T ss_pred             EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHH
Confidence            2222222233456667777888877665555554

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.68  E-value=4.8e-08  Score=96.63  Aligned_cols=96  Identities=26%  Similarity=0.425  Sum_probs=73.9

Q ss_pred             EEEEeC-ChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-ccc
Q 009395          150 VAILGG-GLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YES  223 (535)
Q Consensus       150 V~vIG~-G~mG~~iA~~l~~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~  223 (535)
                      |+|||+ |.||.++|..++..|    .+|+++|+++++++.....+++.....             ...+++.++| +++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~   67 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA   67 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence            689999 999999999999999    699999999988776555444332111             1135666677 578


Q ss_pred             ccCCCEEEE--------------eccCChHHHHHHHHHHHhhcCCCceee
Q 009395          224 FKDVDMVIE--------------AIIENVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       224 ~~~aDlVI~--------------avpe~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      +++||+||+              .+.++..+++++.+++.++++ +++++
T Consensus        68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i  116 (263)
T cd00650          68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP-DAWII  116 (263)
T ss_pred             hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE
Confidence            999999999              556778899999999999984 55443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.68  E-value=2e-08  Score=91.48  Aligned_cols=98  Identities=22%  Similarity=0.301  Sum_probs=85.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCC----chHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHh
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPN----QLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ   76 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~----~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (535)
                      +|+|||.+++.||+..||||+||.+.    .....|+++|+++..+. |                               
T Consensus       188 LIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g-P-------------------------------  235 (291)
T KOG1679|consen  188 LIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG-P-------------------------------  235 (291)
T ss_pred             HhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC-c-------------------------------
Confidence            58999999999999999999999875    45566777777776642 3                               


Q ss_pred             CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        77 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                          .|+..+|-+|+.+.+.++..++.+|..-+++...+.|.-+++.+|.+||++...
T Consensus       236 ----iavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~  289 (291)
T KOG1679|consen  236 ----IAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK  289 (291)
T ss_pred             ----hhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence                377889999999999999999999999999999999999999999999988653

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=2.7e-06  Score=85.17  Aligned_cols=193  Identities=15%  Similarity=0.168  Sum_probs=128.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc----
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES----  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~----  223 (535)
                      ..|+|||+|+||+.+|..++++|+.|.+|+|+.++.+...+.          .+.         ..+|.+..++++    
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~----------~~~---------~k~i~~~~sieefV~~   64 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAE----------RAK---------GKNIVPAYSIEEFVAS   64 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHh----------Ccc---------CCCccccCcHHHHHHH
Confidence            469999999999999999999999999999999998876532          110         013444444443    


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHh---hcCCCCcEEeecccCC---CCCCCEEEE
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE---RTYSKDRIVGAHFFSP---AHVMPLLEI  297 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~---~~~~~~r~ig~h~~~P---~~~~~lvei  297 (535)
                      ++.---|+..|-.. .....++++|.+++.++.|+++-.-+.-.+.+..   .....-.|+|+---..   +..+|  .+
T Consensus        65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP--Si  141 (473)
T COG0362          65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP--SI  141 (473)
T ss_pred             hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC--Cc
Confidence            45566777777543 2346788999999999999987665554443322   2233446777643211   11111  25


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCc----e--EEeC-Ccccchh----hhhHH---HHHHHHHHHHHcC--CCHHHHHHHH
Q 009395          298 VRTNQTSPQVIVDLLDIGKKIKKT----P--IVVG-NCTGFAV----NRMFF---PYTQAAFLLVERG--TDLYLIDRAI  361 (535)
Q Consensus       298 v~~~~ts~e~~~~~~~l~~~lGk~----~--i~v~-d~~G~i~----nri~~---~~~~ea~~l~~~G--~~~~~ID~a~  361 (535)
                      +||  .+++..+.+.+++..+...    |  .+++ +..|.++    |-|=+   .++.|+..++.++  .|.++|-.++
T Consensus       142 MpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF  219 (473)
T COG0362         142 MPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVF  219 (473)
T ss_pred             CCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            566  3789999999999876522    2  2344 4556543    55544   3589999999875  5999999887


Q ss_pred             Hhc
Q 009395          362 TKF  364 (535)
Q Consensus       362 ~g~  364 (535)
                      ..+
T Consensus       220 ~~W  222 (473)
T COG0362         220 EEW  222 (473)
T ss_pred             HHh
Confidence            643

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=98.59  E-value=5.7e-08  Score=87.77  Aligned_cols=96  Identities=21%  Similarity=0.255  Sum_probs=77.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||.||+++||+.-|||.++||+++|..++.+++.+|-..++.                                   
T Consensus       188 ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~sra-----------------------------------  232 (287)
T KOG1682|consen  188 MLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRA-----------------------------------  232 (287)
T ss_pred             HHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHH-----------------------------------
Confidence            789999999999999999999999999999999999988775311                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                       ....-|+-.+....++..+++..-.+....-+.-.|++++|.+|++||++.
T Consensus       233 -v~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~  283 (287)
T KOG1682|consen  233 -VISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPN  283 (287)
T ss_pred             -HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCC
Confidence             112344555555556666777777777778888899999999999999875

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.58  E-value=4e-07  Score=80.97  Aligned_cols=101  Identities=28%  Similarity=0.373  Sum_probs=68.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      +||+|||+ |.+|..+|..+...++  +++++|++++.++....++++......             ........+++++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~-------------~~~~i~~~~~~~~   67 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP-------------SPVRITSGDYEAL   67 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST-------------EEEEEEESSGGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc-------------ccccccccccccc
Confidence            58999999 9999999999999986  899999998876654444433221110             0111223677899


Q ss_pred             cCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          225 KDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       225 ~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ++||+||.+.  |.            +..+.+++..++.++.+ +.+++..|
T Consensus        68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p-~~~vivvt  118 (141)
T PF00056_consen   68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP-DAIVIVVT  118 (141)
T ss_dssp             TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-TSEEEE-S
T ss_pred             ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-ccEEEEeC
Confidence            9999999876  21            33456666677888874 44444333

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.54  E-value=2.8e-07  Score=93.85  Aligned_cols=100  Identities=16%  Similarity=0.042  Sum_probs=76.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||+|.||.++|..+...|++|++||++++.....                            +....++ +.+++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~  198 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKD  198 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhc
Confidence            589999999999999999999999999999987542110                            0112234 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~  275 (535)
                      ||+|+.++|...+....+.+++.+.+++++++++.+-+.  .-..+.+.+.
T Consensus       199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~  249 (330)
T PRK12480        199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN  249 (330)
T ss_pred             CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence            999999999988877777788888999999887655553  3446666663

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.53  E-value=5.9e-07  Score=85.11  Aligned_cols=150  Identities=13%  Similarity=0.150  Sum_probs=114.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ++|++||+|.|..+|+..+.++|+    +++.+-.+......          .+...|            .-...++.+.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~----------~~~~~g------------~~~~~~n~~~   58 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGL----------MFEALG------------VKTVFTNLEV   58 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhh----------hhhcCC------------ceeeechHHH
Confidence            379999999999999999999996    34444332221111          001112            1123445667


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEE-EEeCCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQ  302 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~~  302 (535)
                      ++.+|+++.++  ++.+...++.++...+..+.|++|...+.+++.+...++.+.|++..+|+.|..+..... +..+..
T Consensus        59 ~~~s~v~~~sv--Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~  136 (267)
T KOG3124|consen   59 LQASDVVFLSV--KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH  136 (267)
T ss_pred             HhhccceeEee--cchhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence            88999999999  466777888888776777889999999999999999998778999999999988766665 557888


Q ss_pred             CCHHHHHHHHHHHHhcCCc
Q 009395          303 TSPQVIVDLLDIGKKIKKT  321 (535)
Q Consensus       303 ts~e~~~~~~~l~~~lGk~  321 (535)
                      ...+..+.+.+++..+|+.
T Consensus       137 ~~~~D~~l~~~ll~~vG~~  155 (267)
T KOG3124|consen  137 ATNEDLELVEELLSAVGLC  155 (267)
T ss_pred             cchhhHHHHHHHHHhcCcc
Confidence            8889999999999999964

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.52  E-value=8.3e-06  Score=76.96  Aligned_cols=148  Identities=16%  Similarity=0.134  Sum_probs=100.7

Q ss_pred             hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCCh
Q 009395          159 GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENV  238 (535)
Q Consensus       159 G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~~  238 (535)
                      |+.+|..++.+||+|++.|.|.+-.+...      +++.-..|.            -..++|.++++++.+.|.-.|-..
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~------w~~vedAGV------------~vv~dD~eaa~~~Ei~VLFTPFGk   94 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEH------WKRVEDAGV------------EVVSDDAEAAEHGEIHVLFTPFGK   94 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHH------HHHHHhcCc------------EEecCchhhhhcceEEEEecccch
Confidence            78899999999999999999877654321      111112221            112456688999999999998542


Q ss_pred             HHHHHHHHHHHhhcCCCceeeecCCcCcHH----HHHhhcCCCCcEEeecccCCCCC----CCEEEEEeCCC------CC
Q 009395          239 SLKQQIFADLEKYCPPHCILASNTSTIDLN----LIGERTYSKDRIVGAHFFSPAHV----MPLLEIVRTNQ------TS  304 (535)
Q Consensus       239 ~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~----~l~~~~~~~~r~ig~h~~~P~~~----~~lveiv~~~~------ts  304 (535)
                       ..-.+.++|.++++.+++|+ ||.+.++-    .+...+..+.+-+|+..|.|+..    ..-.-++.+..      .+
T Consensus        95 -~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elAT  172 (340)
T COG4007          95 -ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELAT  172 (340)
T ss_pred             -hhHHHHHHHHhhCcCCcEec-ccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeecc
Confidence             23467788999999999886 55555543    34445555666778777766532    11122333322      36


Q ss_pred             HHHHHHHHHHHHhcCCceEEeC
Q 009395          305 PQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      +|++++..++.++.||.++++.
T Consensus       173 eEQi~r~velaes~Gk~~yv~p  194 (340)
T COG4007         173 EEQIERCVELAESTGKEVYVLP  194 (340)
T ss_pred             HHHHHHHHHHHHhcCCceEecC
Confidence            8999999999999999999876

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=98.51  E-value=1.5e-07  Score=94.13  Aligned_cols=81  Identities=23%  Similarity=0.268  Sum_probs=70.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       180 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  223 (288)
T PRK08290        180 LLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMP-P-----------------------------------  223 (288)
T ss_pred             HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHh-cCHH
Q 009395           81 THPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLL-RSET  117 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~~~~-~s~e  117 (535)
                      .+...+|++++..... ++++++..|...+...+ +++|
T Consensus       224 ~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (288)
T PRK08290        224 FGLRLTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE  262 (288)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence            2566788999887765 68999999998888877 7776

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.42  E-value=7.3e-07  Score=90.14  Aligned_cols=98  Identities=23%  Similarity=0.297  Sum_probs=67.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.+|+++|..++..|  .+|+++|++++.++....++++.....   +.         ...+. +.++++++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~---~~---------~~~i~-~~~~~~l~   67 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL---PS---------PVKIK-AGDYSDCK   67 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc---CC---------CeEEE-cCCHHHhC
Confidence            48999999999999999999999  589999999988765544443221000   00         00122 34667789


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       226 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      +||+||.+...              +..+.+++...+.++.+ +++++
T Consensus        68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vi  114 (306)
T cd05291          68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFL  114 (306)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence            99999999842              34456677777888776 44443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=98.42  E-value=2e-07  Score=90.24  Aligned_cols=73  Identities=25%  Similarity=0.326  Sum_probs=62.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|||++++.+.+.+++++++..+ |                                   
T Consensus       156 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  199 (229)
T PRK06213        156 AVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLN-M-----------------------------------  199 (229)
T ss_pred             HHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999998852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF  109 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f  109 (535)
                      .+...+|+.++.....+++++++.|...|
T Consensus       200 ~a~~~~K~~l~~~~~~~l~~~~~~~~~~~  228 (229)
T PRK06213        200 GAHAATKLKVRAAALEAIRAAIEGDAAEF  228 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhhhhhhc
Confidence            25667888888877777888888887765

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=98.41  E-value=6.3e-07  Score=84.53  Aligned_cols=104  Identities=26%  Similarity=0.336  Sum_probs=70.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-  222 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~---~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  222 (535)
                      .||+|||+|.||+.+|..|++.|+ +++++|.+   ++.+.+-.      + .....|.-..+.+...+.++.+..+++ 
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~------~-~~~~iG~~Ka~~~~~~l~~inp~~~i~~   94 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ------Y-KASQVGEPKTEALKENISEINPYTEIEA   94 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc------C-ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            579999999999999999999999 69999998   55543311      0 000112211122233333333322221 


Q ss_pred             ------------cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 009395          223 ------------SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       223 ------------~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                                  .++++|+||+| .+++..|..++.++....+...+++
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                        36789999999 6899999999999988877766665

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.41  E-value=4.1e-07  Score=92.00  Aligned_cols=70  Identities=27%  Similarity=0.219  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhh---hhcCcchHHHHHHHHHhHhcCCC
Q 009395          460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTF---IHRGFSKSSSCFKNLLCYFDQGR  530 (535)
Q Consensus       460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~---~~~G~~~~~~~~~~~~~~~~~~~  530 (535)
                      .+++||++.++++|++.++++|++ ++++||.++..|+|||++++||+   |++|+|+..++++.+++.+++++
T Consensus       183 Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~  255 (314)
T PRK08269        183 GYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDR  255 (314)
T ss_pred             CcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCC
Confidence            479999999999999999999998 99999999999999997555555   78999999999999998877644

>PRK08788 enoyl-CoA hydratase; Validated

Probab=98.41  E-value=9e-07  Score=88.14  Aligned_cols=90  Identities=16%  Similarity=0.060  Sum_probs=71.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||++||++++.+++.+++++++..  |.                                  
T Consensus       185 llltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~--~~----------------------------------  228 (287)
T PRK08788        185 LILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK--LN----------------------------------  228 (287)
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC--cc----------------------------------
Confidence            578999999999999999999999999999999999999974  21                                  


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHH-HHHHHHHHhh
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET-CKSLVHIFFA  127 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e-~~~~i~aF~~  127 (535)
                       ++..+|+..+.....++++.++.|...+..++++.+ .++-+..|..
T Consensus       229 -~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (287)
T PRK08788        229 -GWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVR  275 (287)
T ss_pred             -HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence             344556666666666788899999888887666554 4666777754

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.40  E-value=1.3e-06  Score=88.11  Aligned_cols=96  Identities=22%  Similarity=0.307  Sum_probs=66.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      .||+|||+|.+|+++|..++..|.  +++++|++++.++....++.+..      ...       ....+..++++++++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~------~~~-------~~~~v~~~~dy~~~~   70 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS------AFL-------KNPKIEADKDYSVTA   70 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh------ccC-------CCCEEEECCCHHHhC
Confidence            599999999999999999998886  79999999876654433332221      000       012455567888999


Q ss_pred             CCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCc
Q 009395          226 DVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHC  256 (535)
Q Consensus       226 ~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~  256 (535)
                      +||+||.+.-  .            +..+.+++.+++.++.++..
T Consensus        71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~  115 (312)
T cd05293          71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAI  115 (312)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            9999998651  1            23345666677888865444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=98.35  E-value=5.9e-07  Score=93.16  Aligned_cols=88  Identities=14%  Similarity=0.271  Sum_probs=71.6

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||++||++++ +.+.+++.+++..+ |                                   
T Consensus       196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~-p-----------------------------------  238 (401)
T PLN02157        196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDD-P-----------------------------------  238 (401)
T ss_pred             HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999997 67778888887742 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF  126 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~  126 (535)
                      .+...+|+.+... ..+.+.++..|.+.+..++.+++.++.+.+|.
T Consensus       239 ~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~  283 (401)
T PLN02157        239 SVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLE  283 (401)
T ss_pred             HHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            1455677776654 23456778888999999999999999999993

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.35  E-value=5.5e-06  Score=83.73  Aligned_cols=174  Identities=14%  Similarity=0.060  Sum_probs=101.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+|||+|.||+-+|..|+++|++|++++++.+.++..++.          .|. +.... ....-.+.. .+.+....
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~----------~Gl~i~~~g-~~~~~~~~~-~~~~~~~~   70 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA----------GGLTLVEQG-QASLYAIPA-ETADAAEP   70 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc----------CCeEEeeCC-cceeeccCC-CCcccccc
Confidence            579999999999999999999999999999988776654320          111 00000 000000111 11233567


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEE-eeccc-----CCCCC---CCEEE
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIV-GAHFF-----SPAHV---MPLLE  296 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~i-g~h~~-----~P~~~---~~lve  296 (535)
                      +|+||.|+-..  -..+.++.+.+.+.+++++++.--++.. +.++..++.. +++ |..++     .|-..   .....
T Consensus        71 ~D~viv~vK~~--~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~-~v~~g~~~~ga~~~~pg~v~~~~~g~~  147 (305)
T PRK05708         71 IHRLLLACKAY--DAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHA-RCIFASSTEGAFRDGDWRVVFAGHGFT  147 (305)
T ss_pred             cCEEEEECCHH--hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCC-cEEEEEeeeceecCCCCEEEEeceEEE
Confidence            89999999532  2357788899999999988777777765 4566665432 333 33222     33211   11111


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHH
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFF  338 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~  338 (535)
                      .+ |.. +.+..+.+.+++...|.......|..+.++..++.
T Consensus       148 ~~-G~~-~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~  187 (305)
T PRK05708        148 WL-GDP-RNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLAL  187 (305)
T ss_pred             EE-cCC-CCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence            12 221 22345666677777675555555555554444443

>PLN02602 lactate dehydrogenase

Probab=98.32  E-value=1.9e-06  Score=88.09  Aligned_cols=96  Identities=24%  Similarity=0.373  Sum_probs=66.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++....++.+...      ...      . ..+..++++++++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~------~~~------~-~~i~~~~dy~~~~  104 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA------FLP------R-TKILASTDYAVTA  104 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh------cCC------C-CEEEeCCCHHHhC
Confidence            599999999999999999998886  799999998776544433332210      000      0 1344445788899


Q ss_pred             CCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCc
Q 009395          226 DVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHC  256 (535)
Q Consensus       226 ~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~  256 (535)
                      +||+||.+.  |            .+..+.+++...+.++.++..
T Consensus       105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~i  149 (350)
T PLN02602        105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTI  149 (350)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence            999999985  1            123455666677777765544

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=98.31  E-value=9.1e-07  Score=89.23  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=40.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH   42 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~   42 (535)
                      |+|||++++|+||+++||||++||++++.+++.++|++++..
T Consensus       188 llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~  229 (302)
T PRK08272        188 LLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAV  229 (302)
T ss_pred             HHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcC
Confidence            579999999999999999999999999999999999999985

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.31  E-value=2.3e-06  Score=85.12  Aligned_cols=145  Identities=19%  Similarity=0.217  Sum_probs=87.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      =++|+|||.|.||.++|..|...|++|+++++.....+.+.           ..|             ....+-.+.++.
T Consensus        16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~-----------~~G-------------~~v~sl~Eaak~   71 (335)
T PRK13403         16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAK-----------ADG-------------FEVMSVSEAVRT   71 (335)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHH-----------HcC-------------CEECCHHHHHhc
Confidence            36899999999999999999999999999987643322211           112             111222255789


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCcHHHHHhhcCCC--CcEEeecccCCCCC----------CC
Q 009395          227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLNLIGERTYSK--DRIVGAHFFSPAHV----------MP  293 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~--~r~ig~h~~~P~~~----------~~  293 (535)
                      ||+|+.++|. .+. +.++ +++.+.++++++++ -+-+..+.. . .+..|  ..++=+-|=.|-+.          .|
T Consensus        72 ADVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~-f~hgfni~~-~-~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp  146 (335)
T PRK13403         72 AQVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLL-FSHGFNIHF-G-QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVP  146 (335)
T ss_pred             CCEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEE-ECCCcceec-C-ceeCCCCCeEEEECCCCCChHHHHHHHcCCCce
Confidence            9999999996 444 4555 57899999998765 344444421 1 11112  12322223223221          12


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhcCCc
Q 009395          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKT  321 (535)
Q Consensus       294 lveiv~~~~ts~e~~~~~~~l~~~lGk~  321 (535)
                      .+.-+.. ..+....+.+..+...+|..
T Consensus       147 ~l~av~q-d~sg~a~~~ala~a~~iG~~  173 (335)
T PRK13403        147 ALVAVHQ-DATGTALHVALAYAKGVGCT  173 (335)
T ss_pred             eEEEEEE-CCCCcHHHHHHHHHHHcCCC
Confidence            2222222 23445677888888888865

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.30  E-value=1.6e-06  Score=78.33  Aligned_cols=120  Identities=14%  Similarity=0.070  Sum_probs=71.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      -++|+|+|+|.||.+++..++..| .+|+++|++++..+...+.+..       .+ +          .....+..+.++
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-------~~-~----------~~~~~~~~~~~~   80 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-------LG-I----------AIAYLDLEELLA   80 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-------cc-c----------ceeecchhhccc
Confidence            358999999999999999999996 7899999998877654322110       00 0          011111123378


Q ss_pred             CCCEEEEeccCChH-HHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhc-CCCCcEEeeccc
Q 009395          226 DVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVGAHFF  286 (535)
Q Consensus       226 ~aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig~h~~  286 (535)
                      ++|+||.|+|.... .....+.  ...+++++++++.++....+.+.+.+ ....+++..|++
T Consensus        81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~~  141 (155)
T cd01065          81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEM  141 (155)
T ss_pred             cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHHH
Confidence            99999999987653 1111111  12356778776555443323444433 223456665554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.29  E-value=1.4e-06  Score=88.46  Aligned_cols=68  Identities=18%  Similarity=0.177  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCC---CCcchhhhhcCcchHHHHHHHHHhHhcC
Q 009395          460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP---PYRFVTFIHRGFSKSSSCFKNLLCYFDQ  528 (535)
Q Consensus       460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~---~~~~g~~~~~G~~~~~~~~~~~~~~~~~  528 (535)
                      .+++||++.++++|+..++++|++ ++++||.++..|+|||   +||+..+|++|+|+..+++..+++.+++
T Consensus       184 G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~  254 (311)
T PRK06130        184 GFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLEN  254 (311)
T ss_pred             CcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCC
Confidence            469999999999999999999998 9999999999999999   5788888899999999999999887754

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.27  E-value=3.7e-06  Score=85.05  Aligned_cols=97  Identities=28%  Similarity=0.384  Sum_probs=66.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.+|.++|..++.+|  .+|+++|++++.++.....+....      .....       ..+ .++++++++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~------~~~~~-------~~i-~~~d~~~l~   66 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGT------PFVKP-------VRI-YAGDYADCK   66 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccc------cccCC-------eEE-eeCCHHHhC
Confidence            37999999999999999999999  589999999887653222221110      00000       122 245778899


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCcee
Q 009395          226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCIL  258 (535)
Q Consensus       226 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii  258 (535)
                      +||+||.+++.              +..+.+++.+++.++.+++.++
T Consensus        67 ~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giii  113 (308)
T cd05292          67 GADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILL  113 (308)
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence            99999999853              3345667777888877665443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.24  E-value=9.2e-06  Score=72.46  Aligned_cols=93  Identities=19%  Similarity=0.246  Sum_probs=62.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|+|||.|..|.+.|..|..+|++|++..+..+ ..+++.           +.|.             ...+-.|+++.
T Consensus         5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~-----------~~Gf-------------~v~~~~eAv~~   60 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAK-----------ADGF-------------EVMSVAEAVKK   60 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHH-----------HTT--------------ECCEHHHHHHC
T ss_pred             CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHH-----------HCCC-------------eeccHHHHHhh
Confidence            6899999999999999999999999999998766 333332           3332             22233366899


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCcH
Q 009395          227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      ||+|+..+|+.  .-.+++ ++|.++++++..+.- +.+..+
T Consensus        61 aDvV~~L~PD~--~q~~vy~~~I~p~l~~G~~L~f-ahGfni   99 (165)
T PF07991_consen   61 ADVVMLLLPDE--VQPEVYEEEIAPNLKPGATLVF-AHGFNI   99 (165)
T ss_dssp             -SEEEE-S-HH--HHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred             CCEEEEeCChH--HHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence            99999999954  446777 789999999997753 444443

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=98.24  E-value=1.6e-05  Score=80.09  Aligned_cols=166  Identities=17%  Similarity=0.158  Sum_probs=99.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +||+|+|+|.||+-++..|+++|++|+++-|++. +++..+           .|..-..............++.+....+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~-----------~GL~i~~~~~~~~~~~~~~~~~~~~~~~   68 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKK-----------KGLRIEDEGGNFTTPVVAATDAEALGPA   68 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHh-----------CCeEEecCCCccccccccccChhhcCCC
Confidence            5899999999999999999999988888888775 554432           2221000000000111223344567799


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH-HHHhhcCCCCcEEeecccC-----CCCC---C-CEEEE
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGAHFFS-----PAHV---M-PLLEI  297 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~ig~h~~~-----P~~~---~-~lvei  297 (535)
                      |+||.++-.  -...++++.+.+.++++++|.+.--++... .+....+...-+.|+-+..     |.+.   + .-+.+
T Consensus        69 Dlviv~vKa--~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~i  146 (307)
T COG1893          69 DLVIVTVKA--YQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVI  146 (307)
T ss_pred             CEEEEEecc--ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEE
Confidence            999999943  345688999999999999777766676554 4555554332344443332     2111   1 12222


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       298 v~~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                      -....-.++..+.+.+.++..|....+..|
T Consensus       147 g~~~~~~~~~~~~i~~~~~~a~~~~~~~~d  176 (307)
T COG1893         147 GELRGGRDELVKALAELFKEAGLEVELHPD  176 (307)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence            222222346677777777777765555444

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.23  E-value=4.3e-06  Score=84.64  Aligned_cols=95  Identities=20%  Similarity=0.278  Sum_probs=66.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.+|+.+|..++..|+  ++.++|++++.++....++++.....      .       .-.+. ++++++++
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~------~-------~~~i~-~~~~~~~~   72 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT------S-------PTKIY-AGDYSDCK   72 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc------C-------CeEEE-eCCHHHhC
Confidence            599999999999999999999998  89999999887765544443322000      0       01233 45778899


Q ss_pred             CCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCc
Q 009395          226 DVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHC  256 (535)
Q Consensus       226 ~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~  256 (535)
                      +||+||.+.-  .            +..+.+++..++.++.++..
T Consensus        73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~  117 (315)
T PRK00066         73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGI  117 (315)
T ss_pred             CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence            9999998762  1            33455666667777665433

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.22  E-value=2.2e-06  Score=87.44  Aligned_cols=101  Identities=17%  Similarity=0.131  Sum_probs=73.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||..+|..+...|++|..||++..... ..           ..+             ... .++ +.+++
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~-----------~~~-------------~~~-~~l~ell~~  204 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EK-----------ELG-------------AEY-RPLEELLRE  204 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HH-----------HcC-------------CEe-cCHHHHHhh
Confidence            6899999999999999999999999999999764321 00           011             111 233 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~  274 (535)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+-  .-..+.+.+
T Consensus       205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL  254 (333)
T PRK13243        205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKAL  254 (333)
T ss_pred             CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHH
Confidence            999999999888776666577888899999886444332  334566665

>PRK15076 alpha-galactosidase; Provisional

Probab=98.21  E-value=4.9e-06  Score=87.69  Aligned_cols=75  Identities=24%  Similarity=0.309  Sum_probs=53.1

Q ss_pred             ceEEEEeCChhhHHHHH--HHH----hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-
Q 009395          148 KKVAILGGGLMGSGIAT--ALI----LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-  220 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~--~l~----~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-  220 (535)
                      +||+|||+|.||...+.  .++    ..|.+|+++|+++++++.+...+++.+...   +         ...+++.++| 
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~---------~~~~i~~ttD~   69 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G---------ASAKITATTDR   69 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C---------CCeEEEEECCH
Confidence            68999999999966555  333    346699999999999876544444333221   1         1135677788 


Q ss_pred             cccccCCCEEEEec
Q 009395          221 YESFKDVDMVIEAI  234 (535)
Q Consensus       221 ~~~~~~aDlVI~av  234 (535)
                      .+++++||+||+++
T Consensus        70 ~eal~dADfVv~ti   83 (431)
T PRK15076         70 REALQGADYVINAI   83 (431)
T ss_pred             HHHhCCCCEEeEee
Confidence            47899999999987

>PRK07574 formate dehydrogenase; Provisional

Probab=98.21  E-value=1.5e-05  Score=82.45  Aligned_cols=103  Identities=16%  Similarity=0.094  Sum_probs=72.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||..+|+.+...|.+|+.||++....+...           ..|             +....++ +.++.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~  248 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQ-----------ELG-------------LTYHVSFDSLVSV  248 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHh-----------hcC-------------ceecCCHHHHhhc
Confidence            6899999999999999999999999999999753211100           011             1112234 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~  274 (535)
                      ||+|+.++|...+...-+=++....++++++++..+.+-  .-..|.+.+
T Consensus       249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL  298 (385)
T PRK07574        249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRAL  298 (385)
T ss_pred             CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHH
Confidence            999999999888765544467788899999887444333  334566665

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=98.20  E-value=4e-06  Score=84.44  Aligned_cols=96  Identities=24%  Similarity=0.366  Sum_probs=67.5

Q ss_pred             EEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          150 VAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      |+|||+|.+|+++|..++..|  .+++++|++++.++....++.+.....             ...++..+++++++++|
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-------------~~~~i~~~~~~~~l~~a   67 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL-------------ATGTIVRGGDYADAADA   67 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc-------------CCCeEEECCCHHHhCCC
Confidence            689999999999999999999  489999999988765554443332110             00134434568899999


Q ss_pred             CEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          228 DMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       228 DlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      |+||.++..              +..+.+++..++.++.+ +++++
T Consensus        68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p-~~~vi  112 (300)
T cd00300          68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGP-DAIIL  112 (300)
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence            999998831              33456677777888874 44443

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=98.20  E-value=3.9e-06  Score=83.47  Aligned_cols=97  Identities=28%  Similarity=0.389  Sum_probs=65.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.+|+++|..++..++  ++.++|++++..+.-..++.+....            .....++..+.++++++
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~------------~~~~~~i~~~~~y~~~~   68 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAP------------LGSDVKITGDGDYEDLK   68 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchh------------ccCceEEecCCChhhhc
Confidence            489999999999999999988765  8999999966543322222111100            00011233334588999


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCc
Q 009395          226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHC  256 (535)
Q Consensus       226 ~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~  256 (535)
                      +||+|+.+.  |-            +..+.+++.+++.++.++..
T Consensus        69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~i  113 (313)
T COG0039          69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAI  113 (313)
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeE
Confidence            999999887  32            45577777778888877444

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.18  E-value=1.2e-05  Score=81.23  Aligned_cols=102  Identities=16%  Similarity=0.144  Sum_probs=73.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||..+|+.+...|++|+.||++.+.....                 .         ......++ +.+++
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~-----------------~---------~~~~~~~l~e~l~~  190 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV-----------------Q---------SFAGREELSAFLSQ  190 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc-----------------e---------eecccccHHHHHhc
Confidence            689999999999999999999999999999875431100                 0         00011233 44789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|...+...-+-++....++++++++..+=+  +.-+.|.+.+.
T Consensus       191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~  241 (312)
T PRK15469        191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD  241 (312)
T ss_pred             CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence            99999999998887766666788889999987643323  34456766663

>PLN03139 formate dehydrogenase; Provisional

Probab=98.17  E-value=2.3e-05  Score=81.02  Aligned_cols=103  Identities=14%  Similarity=0.109  Sum_probs=73.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.||..+|+.+...|.+|..||++....+...           +.|             +....+++ .+++
T Consensus       200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~  255 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------ETG-------------AKFEEDLDAMLPK  255 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------hcC-------------ceecCCHHHHHhh
Confidence            6899999999999999999999999999998743211110           011             11223444 4689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~  274 (535)
                      ||+|+.++|...+.+.-+=+++...++++++++..+-+-  .-+.+.+.+
T Consensus       256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL  305 (386)
T PLN03139        256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADAC  305 (386)
T ss_pred             CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHH
Confidence            999999999888776655567888899999886443332  334566666

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.17  E-value=1.1e-05  Score=81.08  Aligned_cols=134  Identities=13%  Similarity=0.086  Sum_probs=85.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||..+|+.+...|++|+.||++...                 .+. .           ....++ +.+++
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----------------~~~-~-----------~~~~~l~ell~~  173 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----------------DGI-S-----------SIYMEPEDIMKK  173 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----------------cCc-c-----------cccCCHHHHHhh
Confidence            78999999999999999888789999999987321                 010 0           001233 34689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcCC-CCcEEeeccc--CCC---CCCCEEEEE
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF--SPA---HVMPLLEIV  298 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~--~P~---~~~~lveiv  298 (535)
                      ||+|+.++|...+...-+-++....++++++++..+.+  +.-..+.+.+.. .....++--|  .|.   +..+-+.+.
T Consensus       174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT  253 (303)
T PRK06436        174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS  253 (303)
T ss_pred             CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence            99999999988876655556677788999988643333  334466666632 2333333222  332   234556666


Q ss_pred             eC-C-CCCHHHHHH
Q 009395          299 RT-N-QTSPQVIVD  310 (535)
Q Consensus       299 ~~-~-~ts~e~~~~  310 (535)
                      |+ . ..+++..+.
T Consensus       254 PHi~g~~t~e~~~~  267 (303)
T PRK06436        254 PHVAGGMSGEIMQP  267 (303)
T ss_pred             CccccccCHHHHHH
Confidence            76 2 245554433

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.16  E-value=5.5e-05  Score=74.31  Aligned_cols=153  Identities=16%  Similarity=0.110  Sum_probs=105.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--c
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--F  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~  224 (535)
                      ..+|+|||.|.||.=+|..+.++|+.|..+||++  -+.+.+.+        ..+.               -+++.+  -
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y--------g~~~---------------ft~lhdlce  106 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY--------GSAK---------------FTLLHDLCE  106 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh--------cccc---------------cccHHHHHh
Confidence            4689999999999999999999999999999987  22222111        1111               122222  2


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhh-cCCCceeeecCCcCcH--HHHHhhcCCCCcEEeecccCCCC-C------CCE
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDL--NLIGERTYSKDRIVGAHFFSPAH-V------MPL  294 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~--~~l~~~~~~~~r~ig~h~~~P~~-~------~~l  294 (535)
                      +..|+|+.|+.  ..-..++++..-.. ++.++|++..+|....  +.+.+.++..-.++-.|++..+. .      .|+
T Consensus       107 rhpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpf  184 (480)
T KOG2380|consen  107 RHPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPF  184 (480)
T ss_pred             cCCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCce
Confidence            57899999994  33345566655444 6678999988886533  44556677777899999986443 2      255


Q ss_pred             EEEE---eCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          295 LEIV---RTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       295 veiv---~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      |-+-   ......+|..+.+.+++...|...+.+.
T Consensus       185 VydkvRig~~~~r~ercE~fleIf~cegckmVemS  219 (480)
T KOG2380|consen  185 VYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMS  219 (480)
T ss_pred             EEEEeeccccccchHHHHHHHHHHHhcCCeEEEEE
Confidence            5432   1233458999999999999998888764

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=98.14  E-value=7.8e-06  Score=82.31  Aligned_cols=98  Identities=17%  Similarity=0.287  Sum_probs=63.3

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          149 KVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ||+|||+|.+|+++|..++..|.  +++++|++++.++....++.+.....   +.        ..-++. +.+++++++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~---~~--------~~~~i~-~~~y~~~~~   68 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALT---YS--------TNTKIR-AGDYDDCAD   68 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccC---CC--------CCEEEE-ECCHHHhCC
Confidence            69999999999999999999987  79999999877654433332211000   00        001233 457899999


Q ss_pred             CCEEEEecc--C----C----------hHHHHHHHHHHHhhcCCCceee
Q 009395          227 VDMVIEAII--E----N----------VSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       227 aDlVI~avp--e----~----------~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      ||+||.+.-  .    +          ..+.+++..++.++.+ +.+++
T Consensus        69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p-~~i~i  116 (307)
T cd05290          69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTK-EAVII  116 (307)
T ss_pred             CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence            999998761  1    1          2344555556676764 44443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.12  E-value=6.5e-06  Score=84.07  Aligned_cols=99  Identities=17%  Similarity=0.128  Sum_probs=67.9

Q ss_pred             ceEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      ++|+|||+|.||.++|..++ ..|.+|+.||++......              .             .+...++++ .++
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--------------~-------------~~~~~~~l~ell~  199 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--------------T-------------YVDYKDTIEEAVE  199 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--------------h-------------hccccCCHHHHHH
Confidence            58999999999999999984 468899999988643210              0             011223443 478


Q ss_pred             CCCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCcH--HHHHhhc
Q 009395          226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDL--NLIGERT  274 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~  274 (535)
                      +||+|+.++|....... ++ .++.+.++++++++..+.+..+  ..+.+.+
T Consensus       200 ~aDvIvl~lP~t~~t~~-li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL  250 (332)
T PRK08605        200 GADIVTLHMPATKYNHY-LFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL  250 (332)
T ss_pred             hCCEEEEeCCCCcchhh-hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence            99999999998766543 33 4566778999988654444333  3555555

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=98.11  E-value=5.2e-06  Score=76.77  Aligned_cols=95  Identities=19%  Similarity=0.082  Sum_probs=81.4

Q ss_pred             ccCCCCCChhHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            2 MLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         2 lltG~~i~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      .+|+|.++|.||++.|||.+|+|. +++++.++.+|+.|+.++ |.                                  
T Consensus       192 afTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS-pv----------------------------------  236 (292)
T KOG1681|consen  192 AFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS-PV----------------------------------  236 (292)
T ss_pred             HhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC-ce----------------------------------
Confidence            479999999999999999999985 678999999999999864 43                                  


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                       |+..+|+.+..+.+++.+++|.+-...--..+.|+|....+.+-++|+++.
T Consensus       237 -aVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~  287 (292)
T KOG1681|consen  237 -AVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTV  287 (292)
T ss_pred             -eeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence             677799999999999999999988777777778888888888877766544

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.11  E-value=1e-06  Score=87.51  Aligned_cols=76  Identities=18%  Similarity=0.210  Sum_probs=68.3

Q ss_pred             cchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccCccH
Q 009395          330 GFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMII  403 (535)
Q Consensus       330 G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l  403 (535)
                      --++++++.+++||++++++||+  ++.++|-+.- |+|||.   |||++.|..|.+.++..++.|..     +.|+.++
T Consensus       294 ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~P~~~l  368 (380)
T KOG1683|consen  294 EDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FEPCQLL  368 (380)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CCHHHHH
Confidence            34899999999999999999997  9999999888 999984   99999999999999999998865     6788888


Q ss_pred             HHHHHCC
Q 009395          404 PIMQEDK  410 (535)
Q Consensus       404 ~~~~~~G  410 (535)
                      .++..+|
T Consensus       369 ~~~a~~~  375 (380)
T KOG1683|consen  369 KDHAKSG  375 (380)
T ss_pred             HHHHhhh
Confidence            8887774

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.08  E-value=3e-05  Score=69.75  Aligned_cols=115  Identities=23%  Similarity=0.246  Sum_probs=74.3

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccc---cCc-ccc
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGV---LDY-ESF  224 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~---~~~-~~~  224 (535)
                      |+|+|+|.||.-+|..|.++|++|+++++++ .++...+           .|. ++... .+  ..+...   .+. +..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-----------~g~~~~~~~-~~--~~~~~~~~~~~~~~~~   65 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-----------QGLTITGPD-GD--ETVQPPIVISAPSADA   65 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-----------HCEEEEETT-EE--EEEEEEEEESSHGHHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-----------eeEEEEecc-cc--eecccccccCcchhcc
Confidence            7899999999999999999999999999998 6554321           121 00000 00  001111   111 245


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEEe
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVG  282 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig  282 (535)
                      ..+|+||.|+...  -..++++.+.+++.+++.+++...++.. +.+.+..+.+ ++++
T Consensus        66 ~~~D~viv~vKa~--~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~~~-~v~~  121 (151)
T PF02558_consen   66 GPYDLVIVAVKAY--QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFPRP-RVLG  121 (151)
T ss_dssp             STESEEEE-SSGG--GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHSTGS-GEEE
T ss_pred             CCCcEEEEEeccc--chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcCCC-cEEE
Confidence            7899999999643  3357888899999999777777777764 4555555443 4443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.04  E-value=1.3e-05  Score=80.97  Aligned_cols=123  Identities=18%  Similarity=0.200  Sum_probs=76.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +||+|+|+ |.+|..++..++..|+  +|+++|+++  +.++.....+.   +.....+.         ..+++.+++++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~   68 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS   68 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence            58999998 9999999999999997  499999964  33332222221   11111110         01355566788


Q ss_pred             cccCCCEEEEecc--CC-----h-------HHHHHHHHHHHhhcCCCceeeecCCcCcHHH--HHhhcCC-CCcEEee
Q 009395          223 SFKDVDMVIEAII--EN-----V-------SLKQQIFADLEKYCPPHCILASNTSTIDLNL--IGERTYS-KDRIVGA  283 (535)
Q Consensus       223 ~~~~aDlVI~avp--e~-----~-------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~--l~~~~~~-~~r~ig~  283 (535)
                      ++++||+||.|+.  ..     .       .+.+++...+.+..+ +.+++..++..++-.  +....+. +.+++|+
T Consensus        69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~  145 (309)
T cd05294          69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL  145 (309)
T ss_pred             HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence            8999999999983  11     1       445666667777765 555555666554432  2333333 3566765

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.02  E-value=3e-05  Score=76.47  Aligned_cols=181  Identities=18%  Similarity=0.175  Sum_probs=104.9

Q ss_pred             CCCcceEEEEeCChhhHHHHHHHHhC--CC-----cEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHhhhccc
Q 009395          144 PRRVKKVAILGGGLMGSGIATALILS--NY-----PVILKEVNEKFLEAGIGRVRANLQSRVKK-GKMTQEKFEKTISLL  215 (535)
Q Consensus       144 ~~~~~kV~vIG~G~mG~~iA~~l~~~--G~-----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~i  215 (535)
                      .+...||+|||.|+||++||+.+..+  ++     +|.+|-...+.-.. .+.+...+....+. ..+..   -+...++
T Consensus        18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~-~~~L~eiIN~~heN~KYlpg---~~lP~Nv   93 (372)
T KOG2711|consen   18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE-AEKLTEIINSRHENVKYLPG---IKLPENV   93 (372)
T ss_pred             hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh-hHHHHHHhccccccccccCC---ccCCCCe
Confidence            44467999999999999999988765  22     68888776544332 11222222211111 11111   1122456


Q ss_pred             ccccCc-ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH----------H-HHHhhcCCCCcEEee
Q 009395          216 TGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL----------N-LIGERTYSKDRIVGA  283 (535)
Q Consensus       216 ~~~~~~-~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~----------~-~l~~~~~~~~r~ig~  283 (535)
                      ..++|+ +++.+||++|.++|.  +....++++|..++++++..+|.+-++..          + .+...++-|-.++..
T Consensus        94 vAv~dl~ea~~dADilvf~vPh--Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~G  171 (372)
T KOG2711|consen   94 VAVPDLVEAAKDADILVFVVPH--QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMG  171 (372)
T ss_pred             EecchHHHHhccCCEEEEeCCh--hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecC
Confidence            677777 567899999999994  57788999999999999988888766543          2 233344444333222


Q ss_pred             cccCC-CCCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395          284 HFFSP-AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       284 h~~~P-~~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                      -=+.+ +......|-+-+..-+.+.-..+.++|+.--..+.++.|..|
T Consensus       172 aNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~  219 (372)
T KOG2711|consen  172 ANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADG  219 (372)
T ss_pred             CchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchH
Confidence            10000 111223333323222333333577788776666666666554

>PRK05869 enoyl-CoA hydratase; Validated

Probab=98.02  E-value=5.5e-06  Score=79.67  Aligned_cols=42  Identities=33%  Similarity=0.646  Sum_probs=40.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH   42 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~   42 (535)
                      |+++|++++|+||+++||||+|+|++++++.+.+++++++..
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~  204 (222)
T PRK05869        163 LVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDG  204 (222)
T ss_pred             HHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999999999999986

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.97  E-value=5.7e-05  Score=76.51  Aligned_cols=101  Identities=20%  Similarity=0.177  Sum_probs=72.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      ++|+|||+|.+|+.+|..+..-|.+|..||+ ++......             .             ......+++ .++
T Consensus       143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~-------------~-------------~~~~~~~Ld~lL~  196 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV-------------D-------------GVVGVDSLDELLA  196 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc-------------c-------------cceecccHHHHHh
Confidence            6899999999999999999999999999999 43332110             0             111223454 378


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc---CcHHHHHhhcC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY  275 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~  275 (535)
                      .||+|+..+|..++.+.-+=++....++++++++ |++-   +.-..|.+.+.
T Consensus       197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N~aRG~vVde~aL~~AL~  248 (324)
T COG0111         197 EADILTLHLPLTPETRGLINAEELAKMKPGAILI-NAARGGVVDEDALLAALD  248 (324)
T ss_pred             hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-ECCCcceecHHHHHHHHH
Confidence            9999999999888765444456677789999775 6653   34456666663

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.95  E-value=9.1e-06  Score=75.41  Aligned_cols=103  Identities=18%  Similarity=0.155  Sum_probs=69.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.+|..+|..+..-|.+|+.||++........           ..             ... ..+++ .++.
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-----------~~-------------~~~-~~~l~ell~~   91 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD-----------EF-------------GVE-YVSLDELLAQ   91 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH-----------HT-------------TEE-ESSHHHHHHH
T ss_pred             CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc-----------cc-------------cce-eeehhhhcch
Confidence            6899999999999999999999999999999977543110           00             111 22444 4688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|-.++...-+=++....++++++++..+-+  +.-+.+.+.+.
T Consensus        92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence            99999999976654433335667788999988754444  34456666663

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.95  E-value=6.2e-05  Score=81.65  Aligned_cols=103  Identities=17%  Similarity=0.086  Sum_probs=71.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.||+.+|..+...|++|+.||+.... +...           +.|             +...++++ .+++
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~  193 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR  193 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence            68999999999999999999999999999985221 1110           111             11222443 4689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|..++.+.-+=++....++++++++..+-+  +.-..|.+.+.
T Consensus       194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~  244 (525)
T TIGR01327       194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE  244 (525)
T ss_pred             CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence            99999999987776544435666788999988644433  34456666663

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK05442 malate dehydrogenase; Provisional

Probab=97.89  E-value=3.4e-05  Score=78.31  Aligned_cols=103  Identities=16%  Similarity=0.098  Sum_probs=66.2

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT  216 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  216 (535)
                      ..||+|||+ |.+|+++|..++..|.       +++++|+++.  .++....++.+......            ..-.+.
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~------------~~~~i~   71 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLL------------AGVVIT   71 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhc------------CCcEEe
Confidence            469999998 9999999999988775       7999999643  23322222221110000            001222


Q ss_pred             cccCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          217 GVLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       217 ~~~~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                       +.+++++++||+||.+.  |.            +..+.+++..+|.++.+++++++..|
T Consensus        72 -~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  130 (326)
T PRK05442         72 -DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG  130 (326)
T ss_pred             -cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence             45678999999999875  21            33456777778888886677665444

>PLN02928 oxidoreductase family protein

Probab=97.89  E-value=9.8e-05  Score=75.80  Aligned_cols=115  Identities=14%  Similarity=0.066  Sum_probs=72.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||..+|..+...|.+|+.||++........            .+ +................++ +.+++
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~L~ell~~  226 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDG------------LL-IPNGDVDDLVDEKGGHEDIYEFAGE  226 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhh------------hc-cccccccccccccCcccCHHHHHhh
Confidence            6899999999999999999999999999999732211000            00 0000000000000011234 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|-..+...-+=++....++++++|+..+-+  +.-+.|.+.+.
T Consensus       227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~  277 (347)
T PLN02928        227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE  277 (347)
T ss_pred             CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence            99999999988776544446677788999988744433  34456666663

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.87  E-value=9.5e-05  Score=80.25  Aligned_cols=129  Identities=19%  Similarity=0.144  Sum_probs=82.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||..+|..+...|++|+.||++... +...           ..|             +... ++ +.+++
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~  194 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR  194 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence            68999999999999999999999999999985321 1110           111             1112 34 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcCC-CCcEEeeccc--CCC-----CCCCEEE
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF--SPA-----HVMPLLE  296 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~--~P~-----~~~~lve  296 (535)
                      ||+|+.++|..++.+.-+=++..+.++++++++..+-+  +.-..+.+.+.. .-.-.++--|  .|.     ...+-+.
T Consensus       195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi  274 (526)
T PRK13581        195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVV  274 (526)
T ss_pred             CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCee
Confidence            99999999988776544436778889999988644433  344566666632 2223333333  232     2245556


Q ss_pred             EEeCCC
Q 009395          297 IVRTNQ  302 (535)
Q Consensus       297 iv~~~~  302 (535)
                      ++|+-.
T Consensus       275 lTPHia  280 (526)
T PRK13581        275 VTPHLG  280 (526)
T ss_pred             EcCccc
Confidence            666543

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.85  E-value=0.00013  Score=76.39  Aligned_cols=102  Identities=16%  Similarity=0.164  Sum_probs=71.2

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhC-------CC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009395          147 VKKVAILGG-GLMGSGIATALILS-------NY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT  216 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~-------G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  216 (535)
                      .-||+|||+ |.+|.++|..++..       |+  +++++|++++.++....++++.....              +..+.
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~--------------~~~v~  165 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL--------------LREVS  165 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh--------------cCceE
Confidence            468999999 99999999999988       76  89999999998765544443322111              11233


Q ss_pred             -cccCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          217 -GVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       217 -~~~~~~~~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                       .+.+++++++||+||.+.  |            .+..+.+++...|.++..++++++..+
T Consensus       166 i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs  226 (444)
T PLN00112        166 IGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG  226 (444)
T ss_pred             EecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence             246789999999999876  2            134456666677777556666655444

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.84  E-value=6e-05  Score=76.42  Aligned_cols=103  Identities=18%  Similarity=0.137  Sum_probs=67.1

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT  216 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  216 (535)
                      .-||+|||+ |.+|+++|..++..|+       +++++|+++  +.++....++.+.....     .+     .  -.++
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~-----~~-----~--~~i~   70 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPL-----LA-----G--VVAT   70 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccc-----cC-----C--cEEe
Confidence            358999998 9999999999998885       799999965  32332222222111000     00     0  0122


Q ss_pred             cccCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          217 GVLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       217 ~~~~~~~~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                       +.+++++++||+||.+.  |            .+..+.+++..++.++.+++++++..|
T Consensus        71 -~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  129 (323)
T TIGR01759        71 -TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG  129 (323)
T ss_pred             -cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence             45678999999999876  1            134466777778888887677665444

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=97.83  E-value=3.4e-05  Score=73.18  Aligned_cols=93  Identities=13%  Similarity=0.189  Sum_probs=80.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |||.|++++|+||...|||+++++++.+.+.++.-++++++-+ |                                   
T Consensus       171 ~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~-p-----------------------------------  214 (266)
T KOG0016|consen  171 MLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLS-P-----------------------------------  214 (266)
T ss_pred             HHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999988842 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR  129 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr  129 (535)
                      ......|++++-.....+..+.+.|.......+.|+|+-+.+..|+.+.
T Consensus       215 ~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~  263 (266)
T KOG0016|consen  215 ESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK  263 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence            2455677888877767788889999999999999999999999998754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.82  E-value=5.7e-05  Score=75.45  Aligned_cols=91  Identities=24%  Similarity=0.267  Sum_probs=62.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||.++|..|...|.+|++++++++..+.+.           +.|..          .+. ..++ +.+.+
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-----------~~g~~----------~~~-~~~l~~~l~~  209 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-----------EMGLI----------PFP-LNKLEEKVAE  209 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HCCCe----------eec-HHHHHHHhcc
Confidence            5899999999999999999999999999999987654321           11210          000 1122 34689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  265 (535)
                      +|+||.++|... +    -++..+.+++++++++.+|..
T Consensus       210 aDiVint~P~~i-i----~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       210 IDIVINTIPALV-L----TADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             CCEEEECCChHH-h----CHHHHhcCCCCeEEEEeCcCC
Confidence            999999998542 1    133445577888887666543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=97.81  E-value=0.00025  Score=73.46  Aligned_cols=185  Identities=14%  Similarity=0.117  Sum_probs=107.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEE------EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVIL------KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l------~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      ++|+|||.|.+|.+.|..+...|++|++      +|.+.+.-+.+.           +.|.             ...+..
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~-----------~dGF-------------~v~~~~   92 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT-----------ENGF-------------KVGTYE   92 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH-----------hcCC-------------ccCCHH
Confidence            7899999999999999999999999983      333333333221           2221             122223


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC----------C
Q 009395          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH----------V  291 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~----------~  291 (535)
                      +.++.||+|+..+|+. . ...+.+++.+.++++.++.- +-+..+..-.-..+....++-+-|=.|-+          .
T Consensus        93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G  169 (487)
T PRK05225         93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG  169 (487)
T ss_pred             HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence            5689999999999976 3 67778999999999997753 33444432211112223344444433322          1


Q ss_pred             CC-EEEEEeCCCCCHHHHHHHHHHHHhcCCc---eEEeC---Cc-ccchhhhh-HHHH-----HHHHHHHHHcCCCHHHH
Q 009395          292 MP-LLEIVRTNQTSPQVIVDLLDIGKKIKKT---PIVVG---NC-TGFAVNRM-FFPY-----TQAAFLLVERGTDLYLI  357 (535)
Q Consensus       292 ~~-lveiv~~~~ts~e~~~~~~~l~~~lGk~---~i~v~---d~-~G~i~nri-~~~~-----~~ea~~l~~~G~~~~~I  357 (535)
                      .| ++.+-+-...+....+.+..+...+|..   ++...   +. ...+..+. +...     ...--.|+++|++|+.-
T Consensus       170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A  249 (487)
T PRK05225        170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYA  249 (487)
T ss_pred             ceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHH
Confidence            12 3333322345666788899999999966   22222   10 11222222 1111     22224567889988876


Q ss_pred             HH
Q 009395          358 DR  359 (535)
Q Consensus       358 D~  359 (535)
                      -.
T Consensus       250 ~k  251 (487)
T PRK05225        250 EK  251 (487)
T ss_pred             HH
Confidence            54

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.80  E-value=4.5e-05  Score=76.89  Aligned_cols=92  Identities=22%  Similarity=0.365  Sum_probs=61.0

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-c-cC--c
Q 009395          149 KVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-V-LD--Y  221 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~-~~--~  221 (535)
                      ||+|||+ |.+|+++|..++..|+  +++++|+++ ....+. ++.+        ..        ....+.. + ++  +
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~-DL~~--------~~--------~~~~i~~~~~~~~~~   62 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAA-DLSH--------IP--------TAASVKGFSGEEGLE   62 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEc-hhhc--------CC--------cCceEEEecCCCchH
Confidence            6999999 9999999999998886  899999987 211111 1110        00        0013332 2 23  6


Q ss_pred             ccccCCCEEEEec--------------cCChHHHHHHHHHHHhhcCCCceee
Q 009395          222 ESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       222 ~~~~~aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      +++++||+||.+.              +.+..+.+++...+.++. ++++++
T Consensus        63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iii  113 (312)
T TIGR01772        63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMIL  113 (312)
T ss_pred             HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEE
Confidence            8899999999876              224556677777788775 555444

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=97.79  E-value=0.00012  Score=75.84  Aligned_cols=132  Identities=15%  Similarity=0.182  Sum_probs=87.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchh----hcccC-----------------CCCCc
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT----LYKTD-----------------KIEPL   59 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~----~~~~~-----------------~~~~~   59 (535)
                      |+|||++++|++|+++||||++||++++.+.+.+++ +++..+ |....    .....                 .++..
T Consensus       168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~  245 (381)
T PLN02988        168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSND-PTFASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRR  245 (381)
T ss_pred             HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccC-HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCC
Confidence            578999999999999999999999999988888877 554431 21100    00000                 01100


Q ss_pred             hHHHHHHHHHHH------------HHHH-hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhc---CHHHHHHHH
Q 009395           60 GEAREIFKFARA------------QARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLR---SETCKSLVH  123 (535)
Q Consensus        60 ~~~~~~~~~~~~------------~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~---s~e~~~~i~  123 (535)
                      + ...+++..++            -... +.+++.+...+.+.++++...++.+.+..|...-..++.   ++|+.|||+
T Consensus       246 ~-~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVR  324 (381)
T PLN02988        246 T-VEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEGCR  324 (381)
T ss_pred             C-HHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHH
Confidence            0 0111111111            0100 234566778888999999988999999999999999988   699999999


Q ss_pred             HHhh-cccCCCCC
Q 009395          124 IFFA-QRGTSKVP  135 (535)
Q Consensus       124 aF~~-kr~~~~~~  135 (535)
                      +-+- |...++|.
T Consensus       325 A~LiDKd~~P~W~  337 (381)
T PLN02988        325 AILVDKDKNPKWE  337 (381)
T ss_pred             HHhcCCCCCCCCC
Confidence            8765 44444443

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=97.77  E-value=0.00011  Score=70.22  Aligned_cols=101  Identities=25%  Similarity=0.399  Sum_probs=69.4

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      +..||.|+|.|..|.++|..++.+|.  ++.++|.++++++...-+++...      ..       -...++....|+..
T Consensus        19 ~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s------~f-------~~~~~V~~~~Dy~~   85 (332)
T KOG1495|consen   19 KHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGS------AF-------LSTPNVVASKDYSV   85 (332)
T ss_pred             cCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhcccc------cc-------ccCCceEecCcccc
Confidence            36799999999999999999999997  89999999998765432222111      00       11235666778888


Q ss_pred             ccCCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceeee
Q 009395          224 FKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILAS  260 (535)
Q Consensus       224 ~~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s  260 (535)
                      .+++++||...-.              +.++.+.++.++.++ +|++++..
T Consensus        86 sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llv  135 (332)
T KOG1495|consen   86 SANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLV  135 (332)
T ss_pred             cCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEE
Confidence            9999999987621              333445555566655 45665443

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.00074  Score=66.91  Aligned_cols=194  Identities=16%  Similarity=0.175  Sum_probs=122.2

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--  223 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--  223 (535)
                      +...|+.||++.||..++...+.+|+.|.+|+|...+.+...+.-.+        |.           .|....++++  
T Consensus         5 ~~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--------~~-----------~i~ga~S~ed~v   65 (487)
T KOG2653|consen    5 PKADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--------GT-----------KIIGAYSLEDFV   65 (487)
T ss_pred             cccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--------CC-----------cccCCCCHHHHH
Confidence            45679999999999999999999999999999999998876543111        10           1222334433  


Q ss_pred             --ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc-Cc-H-HHHHhhcCCCCcEEeecccC---CCCCCCEE
Q 009395          224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST-ID-L-NLIGERTYSKDRIVGAHFFS---PAHVMPLL  295 (535)
Q Consensus       224 --~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~-~~-~-~~l~~~~~~~~r~ig~h~~~---P~~~~~lv  295 (535)
                        ++.--.||.-|.... ....++++|.+++.++.||++..-+ ++ . ....+.....--|+|.---.   .+..+|  
T Consensus        66 ~klk~PR~iillvkAG~-pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP--  142 (487)
T KOG2653|consen   66 SKLKKPRVIILLVKAGA-PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP--  142 (487)
T ss_pred             HhcCCCcEEEEEeeCCC-cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC--
Confidence              455667777764332 3457789999999988888765432 32 1 12222223333466654321   122222  


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCc-------eEEeCC-cccchh----hhhHH---HHHHHHHHHHHc--CCCHHHHH
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGFAV----NRMFF---PYTQAAFLLVER--GTDLYLID  358 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~-------~i~v~d-~~G~i~----nri~~---~~~~ea~~l~~~--G~~~~~ID  358 (535)
                      .++||  .+++....++.+++.+...       ..++++ ..|.++    |-|-+   .++.||..++..  |.+-++|-
T Consensus       143 SlMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia  220 (487)
T KOG2653|consen  143 SLMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIA  220 (487)
T ss_pred             ccCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence            24555  4788888888888875322       234554 344333    44432   468999999875  56888888


Q ss_pred             HHHHh
Q 009395          359 RAITK  363 (535)
Q Consensus       359 ~a~~g  363 (535)
                      .++..
T Consensus       221 ~vF~~  225 (487)
T KOG2653|consen  221 EVFDD  225 (487)
T ss_pred             HHHHh
Confidence            87654

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.76  E-value=6.1e-05  Score=76.29  Aligned_cols=71  Identities=20%  Similarity=0.270  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCC---CCcchhhhhc---CcchHHHHHHHHHhHhcCCCC
Q 009395          460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP---PYRFVTFIHR---GFSKSSSCFKNLLCYFDQGRN  531 (535)
Q Consensus       460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~---~~~~g~~~~~---G~~~~~~~~~~~~~~~~~~~~  531 (535)
                      .+++||++.++++||+.++++|++ ++++||.++..|+|++   ++|+.+.|..   |++........++..+.+++.
T Consensus       187 G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~  263 (308)
T PRK06129        187 GFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERG  263 (308)
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccC
Confidence            479999999999999999999998 9999999999999998   7888888875   899999999999888877653

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.75  E-value=4.8e-05  Score=75.47  Aligned_cols=71  Identities=14%  Similarity=0.285  Sum_probs=54.3

Q ss_pred             ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|+|||.| .||.+||..|.++|++|++|++....++                                     +.+++
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~  202 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ  202 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence            689999996 9999999999999999999986543211                                     23578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ||+||.|++....+...       .+++++++++.+
T Consensus       203 ADIVIsavg~~~~v~~~-------~ik~GaiVIDvg  231 (301)
T PRK14194        203 ADIVVAAVGRPRLIDAD-------WLKPGAVVIDVG  231 (301)
T ss_pred             CCEEEEecCChhcccHh-------hccCCcEEEEec
Confidence            99999999865433322       278899887654

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.74  E-value=0.00028  Score=72.91  Aligned_cols=102  Identities=19%  Similarity=0.219  Sum_probs=68.4

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCC-c----EE--EE--eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNY-P----VI--LK--EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT  216 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~-~----V~--l~--d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  216 (535)
                      .-||+|||+ |.+|.++|..++..|+ .    |.  ++  |++.+.++....++.+....              .+..++
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~--------------~~~~v~  109 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP--------------LLREVS  109 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh--------------hcCceE
Confidence            358999999 9999999999998875 2    44  45  88888776544333322100              111233


Q ss_pred             -cccCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          217 -GVLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       217 -~~~~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                       .+.+++++++||+||.+.  |.            +..+.+++...|.++.+++++++..+
T Consensus       110 i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs  170 (387)
T TIGR01757       110 IGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG  170 (387)
T ss_pred             EecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence             245778999999999875  21            34456677777888777777665444

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.72  E-value=5e-05  Score=77.01  Aligned_cols=100  Identities=16%  Similarity=0.119  Sum_probs=65.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc--cc
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTIS--LL  215 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~--~i  215 (535)
                      .||+|||+ |.+|.++|..++..|.       +++++|++++.  ++....++.+..         +     ....  .+
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~---------~-----~~~~~~~i   68 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCA---------F-----PLLAEIVI   68 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhcc---------c-----cccCceEE
Confidence            58999999 9999999999998886       79999996432  322111111100         0     0001  23


Q ss_pred             ccccCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          216 TGVLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       216 ~~~~~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      . +.+++++++||+||.+.  |.            +..+.+++..+|.++.+++.+++..|
T Consensus        69 ~-~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (322)
T cd01338          69 T-DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG  128 (322)
T ss_pred             e-cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence            2 45678999999999876  11            34456777778888886566554443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.69  E-value=0.00026  Score=71.61  Aligned_cols=99  Identities=18%  Similarity=0.104  Sum_probs=70.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.+|+.+|..+..-|.+|..||+.....+               .+             +. ..+++ .++.
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~---------------~~-------------~~-~~~l~ell~~  196 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN---------------EE-------------YE-RVSLEELLKT  196 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc---------------cC-------------ce-eecHHHHhhc
Confidence            6899999999999999999888999999998632100               00             01 12343 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|-.++.+.-+=++....++++++++..+-+  +.-+.|.+.+.
T Consensus       197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~  247 (311)
T PRK08410        197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD  247 (311)
T ss_pred             CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence            99999999988776544445677789999988643333  34456767664

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.68  E-value=0.00019  Score=72.18  Aligned_cols=96  Identities=21%  Similarity=0.284  Sum_probs=62.1

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-c-C--
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-L-D--  220 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~--  220 (535)
                      +||+|||+ |.+|+++|..++..|+  +++++|++  .++....++.+..                ....+... . +  
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~----------------~~~~i~~~~~~~~~   62 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHIN----------------TPAKVTGYLGPEEL   62 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCC----------------CcceEEEecCCCch
Confidence            48999999 9999999999998885  89999998  2221111111100                00134432 2 2  


Q ss_pred             cccccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          221 YESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       221 ~~~~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ++++++||+||.+.  |            .+..+.+++...+.++.+ +++++..|
T Consensus        63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p-~a~vivvt  117 (310)
T cd01337          63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACP-KALILIIS  117 (310)
T ss_pred             HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcc
Confidence            68999999999876  2            244566667777777754 56554333

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.67  E-value=0.0002  Score=64.41  Aligned_cols=98  Identities=22%  Similarity=0.264  Sum_probs=60.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +++.|+|.|..|.++|+.|...|..|+++|++|-+.-++.           -.|             ....+-.+++..+
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-----------~dG-------------f~v~~~~~a~~~a   79 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-----------MDG-------------FEVMTLEEALRDA   79 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-----------HTT--------------EEE-HHHHTTT-
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-----------hcC-------------cEecCHHHHHhhC
Confidence            5799999999999999999999999999999997643332           122             2222222557899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc---CcHHHHHhh
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGER  273 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~  273 (535)
                      |++|.+.-...-+..    +....+++++|+++.++.   +.+..+.+.
T Consensus        80 di~vtaTG~~~vi~~----e~~~~mkdgail~n~Gh~d~Eid~~~L~~~  124 (162)
T PF00670_consen   80 DIFVTATGNKDVITG----EHFRQMKDGAILANAGHFDVEIDVDALEAN  124 (162)
T ss_dssp             SEEEE-SSSSSSB-H----HHHHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred             CEEEECCCCccccCH----HHHHHhcCCeEEeccCcCceeEeecccccc
Confidence            999988764322222    334457899999866653   355555443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.66  E-value=0.0003  Score=69.59  Aligned_cols=85  Identities=22%  Similarity=0.296  Sum_probs=55.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          148 KKVAILGGGLMGSGIATALILS--NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~--G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      +||+|||+|.||..++..+.+.  +++ +.++|+++++.+...+.          .+             ....+++++ 
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~----------~~-------------~~~~~~~~el   58 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK----------TG-------------AKACLSIDEL   58 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh----------cC-------------CeeECCHHHH
Confidence            5899999999999999998876  355 55899998876543210          01             112344544 


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCcee
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL  258 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii  258 (535)
                      +.++|+|++|+|.+  ...++..++.+. ..+.++
T Consensus        59 l~~~DvVvi~a~~~--~~~~~~~~al~~-Gk~Vvv   90 (265)
T PRK13304         59 VEDVDLVVECASVN--AVEEVVPKSLEN-GKDVII   90 (265)
T ss_pred             hcCCCEEEEcCChH--HHHHHHHHHHHc-CCCEEE
Confidence            47899999999743  334555554432 334444

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.65  E-value=0.00053  Score=69.70  Aligned_cols=101  Identities=16%  Similarity=0.125  Sum_probs=70.6

Q ss_pred             ceEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      ++|+|||.|.+|..+|+.+. .-|.+|..||+........            ..+             +.. .+++ .++
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~------------~~~-------------~~~-~~l~ell~  199 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEE------------RFN-------------ARY-CDLDTLLQ  199 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHH------------hcC-------------cEe-cCHHHHHH
Confidence            78999999999999999987 6788999999863211000            001             111 2343 478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY  275 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  275 (535)
                      .||+|+.++|-.++...-+=++....++++++++ |++ +  +.-+.|.+.+.
T Consensus       200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~vVde~AL~~AL~  251 (323)
T PRK15409        200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI-NAGRGPVVDENALIAALQ  251 (323)
T ss_pred             hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence            9999999999888765444456777889999886 554 2  34456777664

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.65  E-value=8e-05  Score=74.86  Aligned_cols=94  Identities=24%  Similarity=0.284  Sum_probs=62.1

Q ss_pred             EEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCE
Q 009395          152 ILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM  229 (535)
Q Consensus       152 vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  229 (535)
                      |||+|.+|+.+|..++..|.  ++.++|++++.++....++++.....   +  +       .-.+. ..+++++++||+
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~---~--~-------~~~i~-~~~~~~~~daDi   67 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL---P--T-------PKKIR-SGDYSDCKDADL   67 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc---C--C-------CeEEe-cCCHHHHCCCCE
Confidence            68999999999999998886  79999999877654443333221000   0  0       01232 356889999999


Q ss_pred             EEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          230 VIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       230 VI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      ||.+.-.              +..+.+++...+.++. ++++++
T Consensus        68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vi  110 (299)
T TIGR01771        68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFL  110 (299)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence            9987621              3345666667777765 455443

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.64  E-value=0.00021  Score=71.77  Aligned_cols=90  Identities=19%  Similarity=0.251  Sum_probs=61.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      +||.|||.|.+|..++..+...|.+|+++|+++++.+.+.           ..|.-          .+. ..++ +.+.+
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~-----------~~G~~----------~~~-~~~l~~~l~~  210 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT-----------EMGLS----------PFH-LSELAEEVGK  210 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HcCCe----------eec-HHHHHHHhCC
Confidence            5899999999999999999999999999999987654332           11210          000 1122 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      +|+||.++|...     +-++..+.++++.++++..+.
T Consensus       211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence            999999998421     223444557778877765553

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=97.63  E-value=5.6e-05  Score=73.58  Aligned_cols=42  Identities=21%  Similarity=0.378  Sum_probs=38.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCC-CchHHHHHHHHHHhhcc
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEH   42 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~la~~   42 (535)
                      |+++|++++|+||+++||||+|||+ +++++.|.++|+++++.
T Consensus       160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~  202 (239)
T PLN02267        160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR  202 (239)
T ss_pred             HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence            5789999999999999999999985 68999999999999985

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=97.63  E-value=7e-05  Score=77.41  Aligned_cols=98  Identities=13%  Similarity=0.206  Sum_probs=66.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.||+.+|..+...|++|.+||+.....+                +.            .. ..+++ .+++
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~----------------~~------------~~-~~~l~ell~~  167 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE----------------GD------------GD-FVSLERILEE  167 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc----------------cC------------cc-ccCHHHHHhh
Confidence            6899999999999999999999999999998543210                00            00 12344 3689


Q ss_pred             CCEEEEeccCChH---HHHHHH-HHHHhhcCCCceeeecCCc--CcHHHHHhhc
Q 009395          227 VDMVIEAIIENVS---LKQQIF-ADLEKYCPPHCILASNTST--IDLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~---~k~~v~-~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~  274 (535)
                      ||+|+.++|-..+   -...++ ++....++++++++..+-+  +.-..+.+.+
T Consensus       168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL  221 (381)
T PRK00257        168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREAL  221 (381)
T ss_pred             CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence            9999999996542   122333 4566678999988643333  3334565555

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.62  E-value=0.00013  Score=67.40  Aligned_cols=98  Identities=24%  Similarity=0.269  Sum_probs=58.1

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-------
Q 009395          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-------  220 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-------  220 (535)
                      ||+|||+|.+|+.++..|++.|. +++++|.+.-.......++.  ...  .-|.-..+.+...+.++.+..+       
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~--~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~   76 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY--FLS--QIGEPKVEALKENLREINPFVKIEAINIK   76 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc--cHh--hCCChHHHHHHHHHHHHCCCCEEEEEEee
Confidence            58999999999999999999998 59999998521111111110  001  1121111222222222221111       


Q ss_pred             -----c-ccccCCCEEEEeccCChHHHHHHHHHHHhh
Q 009395          221 -----Y-ESFKDVDMVIEAIIENVSLKQQIFADLEKY  251 (535)
Q Consensus       221 -----~-~~~~~aDlVI~avpe~~~~k~~v~~~l~~~  251 (535)
                           . +.++++|+||+| .++...+..+.......
T Consensus        77 ~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~  112 (174)
T cd01487          77 IDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN  112 (174)
T ss_pred             cChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence                 1 236789999999 56788877777766654

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN00106 malate dehydrogenase

Probab=97.62  E-value=7.7e-05  Score=75.48  Aligned_cols=91  Identities=21%  Similarity=0.305  Sum_probs=59.1

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---  220 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---  220 (535)
                      .||+|||+ |.+|+.+|..++..++  +++++|+++  .+.....+.+.       .        . .-.+.. +.+   
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~-------~--------~-~~~i~~~~~~~d~   80 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHI-------N--------T-PAQVRGFLGDDQL   80 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhC-------C--------c-CceEEEEeCCCCH
Confidence            59999999 9999999999998776  899999987  11100011000       0        0 002221 223   


Q ss_pred             cccccCCCEEEEec--------------cCChHHHHHHHHHHHhhcCCCc
Q 009395          221 YESFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHC  256 (535)
Q Consensus       221 ~~~~~~aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~  256 (535)
                      ++++++||+||.+.              +.+..+.+++.+.+.++.++..
T Consensus        81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~ai  130 (323)
T PLN00106         81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNAL  130 (323)
T ss_pred             HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence            57899999999876              2345566777777777775443

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.59  E-value=0.00014  Score=64.20  Aligned_cols=74  Identities=20%  Similarity=0.223  Sum_probs=51.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      -++|.|||+|-||++++..|+..|.+ |++++|+.++++...+.+        ....+          .....+++ +.+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~   73 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEAL   73 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHH
Confidence            46899999999999999999999986 999999999877654321        00000          01112222 246


Q ss_pred             cCCCEEEEeccCCh
Q 009395          225 KDVDMVIEAIIENV  238 (535)
Q Consensus       225 ~~aDlVI~avpe~~  238 (535)
                      .++|+||.|+|...
T Consensus        74 ~~~DivI~aT~~~~   87 (135)
T PF01488_consen   74 QEADIVINATPSGM   87 (135)
T ss_dssp             HTESEEEE-SSTTS
T ss_pred             hhCCeEEEecCCCC
Confidence            78999999997553

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.57  E-value=0.00014  Score=73.58  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             CCcceEEEEeC-ChhhHHHHHHHHhCC--CcEEEEeCC
Q 009395          145 RRVKKVAILGG-GLMGSGIATALILSN--YPVILKEVN  179 (535)
Q Consensus       145 ~~~~kV~vIG~-G~mG~~iA~~l~~~G--~~V~l~d~~  179 (535)
                      .+++||+|||+ |.+|+.+|..++..+  .+++++|++
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~   43 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV   43 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence            45789999999 999999999999666  489999993

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=97.56  E-value=0.0023  Score=64.10  Aligned_cols=157  Identities=16%  Similarity=0.084  Sum_probs=90.0

Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCcccccCCCEEEEeccC
Q 009395          158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE  236 (535)
Q Consensus       158 mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe  236 (535)
                      ||+.+|..|+++|++|++++|+ +..+...           +.|. +...........+..+++.+.+..+|+||.|++.
T Consensus         2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~-----------~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs   69 (293)
T TIGR00745         2 VGSLYGAYLARAGHDVTLLARG-EQLEALN-----------QEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKA   69 (293)
T ss_pred             chHHHHHHHHhCCCcEEEEecH-HHHHHHH-----------HCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccc
Confidence            7999999999999999999997 4444332           1121 0000000000022334455557789999999975


Q ss_pred             ChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEEeeccc------CCCCC----CCEEEEEeCCCCCH
Q 009395          237 NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFF------SPAHV----MPLLEIVRTNQTSP  305 (535)
Q Consensus       237 ~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h~~------~P~~~----~~lveiv~~~~ts~  305 (535)
                      .  ...++++.+.+++.++++|++..-++.. +.+...++. .++++....      .|...    ...+.+-..+.. .
T Consensus        70 ~--~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~-~  145 (293)
T TIGR00745        70 Y--QTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGE-N  145 (293)
T ss_pred             h--hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCc-h
Confidence            4  2467788999999888888776667644 445555543 344432221      23211    011222222222 2


Q ss_pred             HHHHHHHHHHHhcCCceEEeCCccc
Q 009395          306 QVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       306 e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                      +..+.+.+.+...|.......|..+
T Consensus       146 ~~~~~l~~~l~~~~~~~~~~~di~~  170 (293)
T TIGR00745       146 EAVEALAELLNEAGIPAELHGDILA  170 (293)
T ss_pred             HHHHHHHHHHHhCCCCCEecchHHH
Confidence            5566777778877766655555433

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.55  E-value=0.00044  Score=68.53  Aligned_cols=79  Identities=23%  Similarity=0.180  Sum_probs=52.7

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          146 RVKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +..||+|||+|.||..++..+.+.  +++|. ++|+++++.+...+.          .|            .....++++
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~----------~g------------~~~~~~~~e   62 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWG----------LR------------RPPPVVPLD   62 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHh----------cC------------CCcccCCHH
Confidence            357899999999999999998863  77776 889998876543211          11            011223443


Q ss_pred             c-ccCCCEEEEeccCChHHHHHHHHHH
Q 009395          223 S-FKDVDMVIEAIIENVSLKQQIFADL  248 (535)
Q Consensus       223 ~-~~~aDlVI~avpe~~~~k~~v~~~l  248 (535)
                      + +.++|+|++|.|.+..  .++...+
T Consensus        63 ell~~~D~Vvi~tp~~~h--~e~~~~a   87 (271)
T PRK13302         63 QLATHADIVVEAAPASVL--RAIVEPV   87 (271)
T ss_pred             HHhcCCCEEEECCCcHHH--HHHHHHH
Confidence            3 5679999999996532  4444433

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.54  E-value=0.00016  Score=75.83  Aligned_cols=99  Identities=23%  Similarity=0.268  Sum_probs=71.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.+|+.+|..+...|.+|..||+++...                .+            ......+++ .++.
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~  203 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----------------LG------------NARQVGSLEELLAQ  203 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----------------cC------------CceecCCHHHHHhh
Confidence            689999999999999999999999999999864210                00            011122444 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|-..+.+.-+=++....++++++++ |+| +  +.-+.|.+.+.
T Consensus       204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~vde~aL~~aL~  254 (409)
T PRK11790        204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILI-NASRGTVVDIDALADALK  254 (409)
T ss_pred             CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-ECCCCcccCHHHHHHHHH
Confidence            999999999887765444456777889999886 454 3  34456666663

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.52  E-value=0.0012  Score=62.45  Aligned_cols=39  Identities=28%  Similarity=0.425  Sum_probs=35.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|+|+|.|.||..+|+.|.+.|++|+++|+++++++..
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~   67 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARA   67 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            589999999999999999999999999999998876554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd00704 MDH Malate dehydrogenase

Probab=97.52  E-value=8.5e-05  Score=75.41  Aligned_cols=100  Identities=20%  Similarity=0.169  Sum_probs=63.5

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-
Q 009395          149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-  217 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-  217 (535)
                      ||+|||+ |.+|+.+|..++..|+       +++++|+++  +.++.....+.+...              ........ 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~--------------~~~~~~~i~   67 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAF--------------PLLKGVVIT   67 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcc--------------cccCCcEEe
Confidence            7999999 9999999999998764       499999987  543221111111000              00011111 


Q ss_pred             ccCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          218 VLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       218 ~~~~~~~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      +.+++++++||+||.+.  |            .+..+.+++..++.++.+++.+++..|
T Consensus        68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            34668899999999875  2            144466777778888875566554443

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.51  E-value=0.00065  Score=68.95  Aligned_cols=96  Identities=18%  Similarity=0.186  Sum_probs=70.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.+|+.+|+.+..-|.+|..||+..... .                 .            . ..+++ .++.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-~-----------------~------------~-~~~l~ell~~  197 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-R-----------------P------------D-RLPLDELLPQ  197 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-c-----------------c------------c-ccCHHHHHHh
Confidence            689999999999999999998899999999863210 0                 0            0 11343 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|-.++...-+=++....++++++++ |++ +  +.-+.|.+.+.
T Consensus       198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N~aRG~vVde~AL~~AL~  248 (317)
T PRK06487        198 VDALTLHCPLTEHTRHLIGARELALMKPGALLI-NTARGGLVDEQALADALR  248 (317)
T ss_pred             CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence            999999999887765444467777899999886 554 3  34456766664

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.51  E-value=0.0006  Score=69.07  Aligned_cols=97  Identities=18%  Similarity=0.232  Sum_probs=70.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.+|+.+|+.+..-|.+|+.||+.....  .            ..+                ..+++ .++.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~--~------------~~~----------------~~~l~ell~~  197 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV--C------------REG----------------YTPFEEVLKQ  197 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc--c------------ccc----------------cCCHHHHHHh
Confidence            689999999999999999988899999999753210  0            000                12343 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|-.++...-+=++....++++++++ |++ +  +.-+.|.+.+.
T Consensus       198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~~Vde~AL~~aL~  248 (314)
T PRK06932        198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLI-NTGRGPLVDEQALLDALE  248 (314)
T ss_pred             CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence            999999999877754444456777889999886 454 3  34556777664

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.50  E-value=0.00036  Score=70.82  Aligned_cols=93  Identities=18%  Similarity=0.161  Sum_probs=60.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALIL-S-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~-~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++|+|||+|.||..++..++. . ..+|++|+|++++.+...+.+.+       .|.           .+....+. +.
T Consensus       125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~a  186 (314)
T PRK06141        125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAA  186 (314)
T ss_pred             CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHH
Confidence            4579999999999999985554 3 46899999999987766543211       110           12223344 35


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +.+||+||.|.+...    .++..  +.+++++.|...++
T Consensus       187 v~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i~~ig~  220 (314)
T PRK06141        187 VRQADIISCATLSTE----PLVRG--EWLKPGTHLDLVGN  220 (314)
T ss_pred             HhcCCEEEEeeCCCC----CEecH--HHcCCCCEEEeeCC
Confidence            789999998887542    22221  35677775544443

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.44  E-value=0.00029  Score=71.58  Aligned_cols=100  Identities=18%  Similarity=0.222  Sum_probs=62.0

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 009395          149 KVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV  218 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~  218 (535)
                      ||+|||+ |.+|+.+|..++..|+       +++++|+++..  ++....++.+.             .. .....+..+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~-------------~~-~~~~~~~~~   66 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDC-------------AF-PLLDGVVPT   66 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcc-------------cc-hhcCceecc
Confidence            6999999 9999999999998665       59999996542  21111111100             00 001223333


Q ss_pred             -cCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          219 -LDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       219 -~~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                       .+++++++||+||.+.  |.            +..+.+++..+|.++.+++++++..|
T Consensus        67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs  125 (324)
T TIGR01758        67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG  125 (324)
T ss_pred             CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence             3478899999999875  21            23345666677888765666655444

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.39  E-value=0.0017  Score=59.86  Aligned_cols=74  Identities=22%  Similarity=0.306  Sum_probs=45.7

Q ss_pred             eEEEEeCChhhHHH--HHHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009395          149 KVAILGGGLMGSGI--ATALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-  221 (535)
Q Consensus       149 kV~vIG~G~mG~~i--A~~l~~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  221 (535)
                      ||+|||+|..-.+.  ...+...    +-+++++|+|+++++....-.+...    +.-..+        -++..++|. 
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~----~~~~~~--------~~v~~ttd~~   68 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMV----EEAGAD--------LKVEATTDRR   68 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHH----HHCTTS--------SEEEEESSHH
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHH----HhcCCC--------eEEEEeCCHH
Confidence            79999999876553  2233332    2389999999999876543333222    211111        246667887 


Q ss_pred             ccccCCCEEEEec
Q 009395          222 ESFKDVDMVIEAI  234 (535)
Q Consensus       222 ~~~~~aDlVI~av  234 (535)
                      +++++||+||.++
T Consensus        69 eAl~gADfVi~~i   81 (183)
T PF02056_consen   69 EALEGADFVINQI   81 (183)
T ss_dssp             HHHTTESEEEE--
T ss_pred             HHhCCCCEEEEEe
Confidence            5699999999877

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.38  E-value=0.00022  Score=73.53  Aligned_cols=96  Identities=16%  Similarity=0.134  Sum_probs=65.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-ccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~  226 (535)
                      ++|+|||.|.||+.+|..+...|.+|.+||+.....                 +.           ... ..++++ +++
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~-----------------~~-----------~~~-~~~L~ell~~  167 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR-----------------GD-----------EGD-FRSLDELVQE  167 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc-----------------cc-----------ccc-cCCHHHHHhh
Confidence            589999999999999999999999999999743210                 00           000 124444 689


Q ss_pred             CCEEEEeccCChH----HHHHHH-HHHHhhcCCCceeeecCC-c--CcHHHHHhhc
Q 009395          227 VDMVIEAIIENVS----LKQQIF-ADLEKYCPPHCILASNTS-T--IDLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~----~k~~v~-~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~  274 (535)
                      ||+|+.++|-..+    . ..++ ++....++++++++ |+| +  +.-+.|.+.+
T Consensus       168 sDiI~lh~PLt~~g~~~T-~~li~~~~l~~mk~gailI-N~aRG~vVDe~AL~~aL  221 (378)
T PRK15438        168 ADILTFHTPLFKDGPYKT-LHLADEKLIRSLKPGAILI-NACRGAVVDNTALLTCL  221 (378)
T ss_pred             CCEEEEeCCCCCCccccc-ccccCHHHHhcCCCCcEEE-ECCCchhcCHHHHHHHH
Confidence            9999999985442    2 2233 45666789999886 554 3  3344565655

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=97.36  E-value=0.00099  Score=69.39  Aligned_cols=132  Identities=17%  Similarity=0.082  Sum_probs=83.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCc--ch--hhc----------------ccC-CCCCc
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPW--VA--TLY----------------KTD-KIEPL   59 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~--~~--~~~----------------~~~-~~~~~   59 (535)
                      |+|||++++|++|+++||+|++||++++ +.+.+.+.++...+ +.  ..  ..+                ... .++..
T Consensus       201 L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~  278 (407)
T PLN02851        201 LALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDD-PAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHD  278 (407)
T ss_pred             HHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCC-HHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999987 55666655543321 00  00  000                000 01111


Q ss_pred             hHHHHHHHHHHH-----------HHHH--hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHh---cCHHHHHHHH
Q 009395           60 GEAREIFKFARA-----------QARK--QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL---RSETCKSLVH  123 (535)
Q Consensus        60 ~~~~~~~~~~~~-----------~~~~--~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~---~s~e~~~~i~  123 (535)
                      +. ..+++..+.           ...+  ..+++.+...+.+.++++...++++.+..|...-..++   .++|+.|||+
T Consensus       279 sv-~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVR  357 (407)
T PLN02851        279 TV-EEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCEGVR  357 (407)
T ss_pred             CH-HHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHHHHH
Confidence            00 111111110           0111  13456677888889999998999999999999888887   4899999999


Q ss_pred             HHhh-cccCCCCC
Q 009395          124 IFFA-QRGTSKVP  135 (535)
Q Consensus       124 aF~~-kr~~~~~~  135 (535)
                      +-+- |...+++.
T Consensus       358 A~LIDKd~~P~W~  370 (407)
T PLN02851        358 ARLVDKDFAPKWD  370 (407)
T ss_pred             HHhcCCCCCCCCC
Confidence            8654 54444443

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.35  E-value=0.00037  Score=69.36  Aligned_cols=71  Identities=15%  Similarity=0.267  Sum_probs=53.5

Q ss_pred             ceEEEEe-CChhhHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILG-GGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      ++|+||| .|.||.+||..|.++|++|++|+ ++++. +                                     +.++
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~  200 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR  200 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence            6899999 89999999999999999999995 55321 0                                     2256


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      .||+||.|++....+. ..      ++++++++++.+.
T Consensus       201 ~ADIVIsavg~~~~v~-~~------~lk~GavVIDvGi  231 (296)
T PRK14188        201 RADILVAAVGRPEMVK-GD------WIKPGATVIDVGI  231 (296)
T ss_pred             cCCEEEEecCChhhcc-hh------eecCCCEEEEcCC
Confidence            8999999998653322 21      2788998876543

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.34  E-value=0.0019  Score=68.08  Aligned_cols=122  Identities=20%  Similarity=0.285  Sum_probs=72.5

Q ss_pred             ceEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       148 ~kV~vIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      .||+|||+|.- ...+...+++.     +-+|+++|+++++++....-.++.    .+....+        -++..|+|.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~----~~~~g~~--------~~v~~ttD~   68 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRY----VEEVGAD--------IKFEKTMDL   68 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHH----HHhhCCC--------eEEEEeCCH
Confidence            48999999874 44556666644     358999999999987633222222    2221110        146667787


Q ss_pred             -ccccCCCEEEEecc----------------------------------CChHHHHHHHHHHHhhcCCCceee--ecCCc
Q 009395          222 -ESFKDVDMVIEAII----------------------------------ENVSLKQQIFADLEKYCPPHCILA--SNTST  264 (535)
Q Consensus       222 -~~~~~aDlVI~avp----------------------------------e~~~~k~~v~~~l~~~~~~~~ii~--s~tS~  264 (535)
                       +++.+||+||.++-                                  -+..+..++.+++.++++ +++++  ||-..
T Consensus        69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P-~a~lin~TNP~d  147 (425)
T cd05197          69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSP-DAWYLNFTNPAG  147 (425)
T ss_pred             HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCC-CcEEEecCChHH
Confidence             56999999997761                                  134466677788888774 45443  33332


Q ss_pred             CcHHHHHhhcCCCCcEEee
Q 009395          265 IDLNLIGERTYSKDRIVGA  283 (535)
Q Consensus       265 ~~~~~l~~~~~~~~r~ig~  283 (535)
                      +-...+.... ...|++|+
T Consensus       148 i~t~a~~~~~-p~~rviG~  165 (425)
T cd05197         148 EVTEAVRRYV-PPEKAVGL  165 (425)
T ss_pred             HHHHHHHHhC-CCCcEEEE
Confidence            2222222222 23567775

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.32  E-value=0.0012  Score=68.89  Aligned_cols=86  Identities=20%  Similarity=0.176  Sum_probs=61.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      ++|+|+|+|.+|..++..+...|.+|+++|+++.+++.+.           ..|. +            .....+.+.++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~-----------~~G~-~------------~~~~~e~v~~a  258 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA-----------MEGY-E------------VMTMEEAVKEG  258 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH-----------hcCC-E------------EccHHHHHcCC
Confidence            5899999999999999999999999999999998876543           2232 0            01111345789


Q ss_pred             CEEEEeccCChHHHHHHHH-HHHhhcCCCceeeecC
Q 009395          228 DMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNT  262 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~t  262 (535)
                      |+||+|....     .++. .....++++.+++...
T Consensus       259 DVVI~atG~~-----~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         259 DIFVTTTGNK-----DIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CEEEECCCCH-----HHHHHHHHhcCCCCcEEEEeC
Confidence            9999998532     2333 3455678888776443

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=97.31  E-value=0.0023  Score=67.55  Aligned_cols=75  Identities=25%  Similarity=0.305  Sum_probs=49.4

Q ss_pred             ceEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       148 ~kV~vIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      +||+|||+|.. +..+...++..     +-+|+++|+++++++....-.+    +.+++...+        -++..|+|.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~----~~~~~~g~~--------~~v~~Ttdr   68 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK----ILFKENYPE--------IKFVYTTDP   68 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEECCH
Confidence            58999999875 33455555544     3589999999999876332222    222221111        146677787


Q ss_pred             -ccccCCCEEEEec
Q 009395          222 -ESFKDVDMVIEAI  234 (535)
Q Consensus       222 -~~~~~aDlVI~av  234 (535)
                       +++++||+||.++
T Consensus        69 ~eAl~gADfVi~~i   82 (437)
T cd05298          69 EEAFTDADFVFAQI   82 (437)
T ss_pred             HHHhCCCCEEEEEe
Confidence             5799999999877

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=97.29  E-value=0.0015  Score=68.70  Aligned_cols=75  Identities=24%  Similarity=0.309  Sum_probs=48.3

Q ss_pred             ceEEEEeCChhhH-HHHHHHHhC-----CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          148 KKVAILGGGLMGS-GIATALILS-----NYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       148 ~kV~vIG~G~mG~-~iA~~l~~~-----G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      +||+|||+|..-+ .+...++..     +-+|+++|++ +++++....-+++..    +....+        -++..|+|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~----~~~~~~--------~~v~~t~d   68 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMV----KKAGLP--------IKVHLTTD   68 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHH----HhhCCC--------eEEEEeCC
Confidence            4899999988643 455555553     3589999999 788765332222222    221110        14566777


Q ss_pred             c-ccccCCCEEEEec
Q 009395          221 Y-ESFKDVDMVIEAI  234 (535)
Q Consensus       221 ~-~~~~~aDlVI~av  234 (535)
                      . +++.+||+||.++
T Consensus        69 ~~~al~gadfVi~~~   83 (419)
T cd05296          69 RREALEGADFVFTQI   83 (419)
T ss_pred             HHHHhCCCCEEEEEE
Confidence            7 5689999999887

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.29  E-value=0.00059  Score=69.17  Aligned_cols=94  Identities=19%  Similarity=0.118  Sum_probs=58.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      -++|+|||+|.||..++..+...| .+|+++|+++++.+...+.+          |. .         .+...+..+.+.
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~----------g~-~---------~~~~~~~~~~l~  237 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL----------GG-N---------AVPLDELLELLN  237 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc----------CC-e---------EEeHHHHHHHHh
Confidence            468999999999999999998866 58999999998765443211          11 0         000111123467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhc-CCCceeeecC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNT  262 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~-~~~~ii~s~t  262 (535)
                      ++|+||.|++....  ..++..+.+.. ..+.++++.+
T Consensus       238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence            89999999985433  33344333222 2345555443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.28  E-value=0.0021  Score=61.96  Aligned_cols=94  Identities=23%  Similarity=0.321  Sum_probs=62.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCc---c-
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDY---E-  222 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---~-  222 (535)
                      ++|.|||+|.+|.++|..|.+.|++|+++|.+++.++.....   .+...                .+.. .++.   + 
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---~~~~~----------------~v~gd~t~~~~L~~   61 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---ELDTH----------------VVIGDATDEDVLEE   61 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---hcceE----------------EEEecCCCHHHHHh
Confidence            579999999999999999999999999999999998763310   00000                0111 1121   1 


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHhh-cCCCceeeecC
Q 009395          223 -SFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNT  262 (535)
Q Consensus       223 -~~~~aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~t  262 (535)
                       .+.++|.+|-++.+|..  ..++..+... +....+++-..
T Consensus        62 agi~~aD~vva~t~~d~~--N~i~~~la~~~~gv~~viar~~  101 (225)
T COG0569          62 AGIDDADAVVAATGNDEV--NSVLALLALKEFGVPRVIARAR  101 (225)
T ss_pred             cCCCcCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEEEec
Confidence             26889999999987643  4555555433 44445555433

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.28  E-value=0.0005  Score=68.25  Aligned_cols=41  Identities=22%  Similarity=0.268  Sum_probs=36.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      -++|.|+|+|.+|.+++..++..|++|++++|++++.+...
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la  157 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELA  157 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            35799999999999999999999999999999988776544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.27  E-value=0.0016  Score=73.03  Aligned_cols=95  Identities=12%  Similarity=0.117  Sum_probs=76.4

Q ss_pred             EEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc--HHHHHhhcCC-CCcEEeecccCCCC------------CCCE
Q 009395          230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFSPAH------------VMPL  294 (535)
Q Consensus       230 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~~P~~------------~~~l  294 (535)
                      ||.|+|  +....++++++.++++++++|++.+|+..  +..+.+.++. +.+|||.||+...+            .+..
T Consensus         1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~   78 (673)
T PRK11861          1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN   78 (673)
T ss_pred             CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence            688998  45678999999999999999998888763  3444455543 35799999997543            2467


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       295 veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      +.++|.+.++++.++.+.++++.+|..++.+.
T Consensus        79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~  110 (673)
T PRK11861         79 VVLCALPENAPDALARVEAMWRAARADVRAMS  110 (673)
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            78889999999999999999999999888886

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.27  E-value=0.0011  Score=67.66  Aligned_cols=93  Identities=12%  Similarity=0.038  Sum_probs=61.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++++|||+|.||...+..+..  ...+|.+||+++++.+...+.+.+       .|.           .+...++. +.
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g~-----------~v~~~~~~~ea  189 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YEV-----------PVRAATDPREA  189 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hCC-----------cEEEeCCHHHH
Confidence            4679999999999997666543  345899999999998766543321       110           12223344 55


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +++||+||.|+|....    ++.  .+.+++++.|.+..|
T Consensus       190 v~~aDiVitaT~s~~P----~~~--~~~l~~g~~v~~vGs  223 (325)
T TIGR02371       190 VEGCDILVTTTPSRKP----VVK--ADWVSEGTHINAIGA  223 (325)
T ss_pred             hccCCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence            8899999999986432    221  234678887655554

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.26  E-value=0.00053  Score=65.35  Aligned_cols=32  Identities=41%  Similarity=0.503  Sum_probs=30.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~  179 (535)
                      .+|+|||+|.+|+.+|..|++.|. +++++|.+
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            579999999999999999999998 59999998

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.25  E-value=0.00048  Score=70.84  Aligned_cols=75  Identities=25%  Similarity=0.271  Sum_probs=54.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc---
Q 009395          147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY---  221 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---  221 (535)
                      +++|.|||+|.+|+.+|..|+++| .+|++-||+.++++++.....         +.+.         .+... .+.   
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~---------~~~vD~~d~~al   62 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVE---------ALQVDAADVDAL   62 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccce---------eEEecccChHHH
Confidence            468999999999999999999999 899999999999887653211         0111         01110 111   


Q ss_pred             -ccccCCCEEEEeccCChH
Q 009395          222 -ESFKDVDMVIEAIIENVS  239 (535)
Q Consensus       222 -~~~~~aDlVI~avpe~~~  239 (535)
                       +.+++.|+||.|+|....
T Consensus        63 ~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748          63 VALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             HHHHhcCCEEEEeCCchhh
Confidence             346788999999987644

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.24  E-value=0.0039  Score=60.96  Aligned_cols=203  Identities=18%  Similarity=0.234  Sum_probs=115.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      |.||+.||+|.+|++....++.+  .++|+++|.+..++..-...-    +..++.-++.         ..=.++-+++|
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd   71 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD   71 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence            46899999999999988777655  468999999999876543221    1122222221         11124567788


Q ss_pred             cc-cccCCCEEEEecc-------------CChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEee
Q 009395          221 YE-SFKDVDMVIEAII-------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGA  283 (535)
Q Consensus       221 ~~-~~~~aDlVI~avp-------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~  283 (535)
                      .+ .++.+|+|+.+|.             .|+......-+.|.+......|++ .-|++|+.   .+...+.+..  -|+
T Consensus        72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~--~~i  148 (481)
T KOG2666|consen   72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNS--KGI  148 (481)
T ss_pred             hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCC--CCc
Confidence            75 5899999999982             255566666677888777777765 56777764   3444443222  245


Q ss_pred             ccc---CCCCC----------CCEEEEEeCCCCCH--HHHHHHHHHHHhcC-CceEEeCCc-----ccchhhhhHHH---
Q 009395          284 HFF---SPAHV----------MPLLEIVRTNQTSP--QVIVDLLDIGKKIK-KTPIVVGNC-----TGFAVNRMFFP---  339 (535)
Q Consensus       284 h~~---~P~~~----------~~lveiv~~~~ts~--e~~~~~~~l~~~lG-k~~i~v~d~-----~G~i~nri~~~---  339 (535)
                      ||-   ||-..          .+--.++.|..|.+  ..++.+..++..+= +..+.+...     .-...|..++.   
T Consensus       149 ~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqris  228 (481)
T KOG2666|consen  149 KFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRIS  228 (481)
T ss_pred             eeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHh
Confidence            552   33211          12223556655432  33444444555532 233333321     12233444332   


Q ss_pred             HHHHHHHHHH-cCCCHHHHHHHH
Q 009395          340 YTQAAFLLVE-RGTDLYLIDRAI  361 (535)
Q Consensus       340 ~~~ea~~l~~-~G~~~~~ID~a~  361 (535)
                      .+|....+.+ -|.+..++-.++
T Consensus       229 sins~salceatgadv~eva~av  251 (481)
T KOG2666|consen  229 SINSMSALCEATGADVSEVAYAV  251 (481)
T ss_pred             hhHHHHHHHHhcCCCHHHHHHHh
Confidence            2344455554 477888887764

>PLN02306 hydroxypyruvate reductase

Probab=97.22  E-value=0.00085  Score=69.70  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=72.1

Q ss_pred             ceEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHH-HHHHHHHHHHHHHH-HHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKF-LEAGIGRVRANLQS-RVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~-~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      ++|+|||.|.+|+.+|+.+. .-|.+|..||+.... .+.....    +.. ....+..   .     ..+....++++ 
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~----~~~~l~~~~~~---~-----~~~~~~~~L~el  233 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTA----YGQFLKANGEQ---P-----VTWKRASSMEEV  233 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhh----hcccccccccc---c-----ccccccCCHHHH
Confidence            68999999999999999985 669999999987532 1110000    000 0000000   0     01111235544 


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY  275 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  275 (535)
                      ++.||+|+.++|-..+...-+=++..+.++++++++ |++ +  +.-..+.+.+.
T Consensus       234 l~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lI-N~aRG~lVDe~AL~~AL~  287 (386)
T PLN02306        234 LREADVISLHPVLDKTTYHLINKERLALMKKEAVLV-NASRGPVIDEVALVEHLK  287 (386)
T ss_pred             HhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHHH
Confidence            689999999999877765544467778899999886 554 3  34456666663

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.22  E-value=0.00082  Score=68.07  Aligned_cols=101  Identities=22%  Similarity=0.156  Sum_probs=72.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      =++++|||.|.+|..+|+.+..-|.+|..||+++.. +..            +.+            ...... + +.++
T Consensus       146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~-~~~------------~~~------------~~~y~~-l~ell~  199 (324)
T COG1052         146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNP-EAE------------KEL------------GARYVD-LDELLA  199 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCCh-HHH------------hhc------------Cceecc-HHHHHH
Confidence            378999999999999999999778899999998641 110            000            011222 4 4579


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc---CcHHHHHhhc
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERT  274 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~  274 (535)
                      .||+|+..+|-..+...-+=++..+.++++.+++ |++-   +.-..+.+.+
T Consensus       200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-NtaRG~~VDe~ALi~AL  250 (324)
T COG1052         200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILV-NTARGGLVDEQALIDAL  250 (324)
T ss_pred             hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-ECCCccccCHHHHHHHH
Confidence            9999999999888765555567788899998775 6653   3444565655

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.21  E-value=0.0011  Score=66.32  Aligned_cols=74  Identities=20%  Similarity=0.229  Sum_probs=51.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      ++|.|||+|.+|++++..|+..|. +|+++||+.++.+...+.+...+      +.          ..+....++ +.+.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~------~~----------~~~~~~~~~~~~~~  191 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARF------PA----------ARATAGSDLAAALA  191 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhC------CC----------eEEEeccchHhhhC
Confidence            689999999999999999999998 79999999988776544332111      00          011111222 2467


Q ss_pred             CCCEEEEeccCC
Q 009395          226 DVDMVIEAIIEN  237 (535)
Q Consensus       226 ~aDlVI~avpe~  237 (535)
                      ++|+||.|+|-.
T Consensus       192 ~aDiVInaTp~G  203 (284)
T PRK12549        192 AADGLVHATPTG  203 (284)
T ss_pred             CCCEEEECCcCC
Confidence            899999998743

>PRK04148 hypothetical protein; Provisional

Probab=97.19  E-value=0.00094  Score=58.21  Aligned_cols=94  Identities=24%  Similarity=0.246  Sum_probs=64.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +||.+||+| -|..+|..|.+.|++|+.+|+++++++.+.+.           +. .     ...+.+ +..+.+--+++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----------~~-~-----~v~dDl-f~p~~~~y~~a   78 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----------GL-N-----AFVDDL-FNPNLEIYKNA   78 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------CC-e-----EEECcC-CCCCHHHHhcC
Confidence            579999999 89899999999999999999999987765421           10 0     000111 12344557899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      |+|-.+-|. +++ +.-+.++.+.+..+.+|..-+
T Consensus        79 ~liysirpp-~el-~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         79 KLIYSIRPP-RDL-QPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             CEEEEeCCC-HHH-HHHHHHHHHHcCCCEEEEcCC
Confidence            999988874 444 344556777777777765433

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.16  E-value=0.0048  Score=60.41  Aligned_cols=146  Identities=19%  Similarity=0.160  Sum_probs=88.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      -++|+|||.|.-|.+-|..|..+|.+|++--+.... -++           ..+.|.             ..-+--++++
T Consensus        18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~k-----------A~~dGf-------------~V~~v~ea~k   73 (338)
T COG0059          18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKK-----------AKEDGF-------------KVYTVEEAAK   73 (338)
T ss_pred             CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHH-----------HHhcCC-------------EeecHHHHhh
Confidence            469999999999999999999999998876654333 222           223332             2222236689


Q ss_pred             CCCEEEEeccCChHHHHHHHH-HHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCC----------CCE
Q 009395          226 DVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV----------MPL  294 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~----------~~l  294 (535)
                      .+|+|+.-+|+.  +-.++++ +|.+.++++..+. -+.++.+..-.-..+....++=+-|=.|-+.          .|.
T Consensus        74 ~ADvim~L~PDe--~q~~vy~~~I~p~Lk~G~aL~-FaHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~  150 (338)
T COG0059          74 RADVVMILLPDE--QQKEVYEKEIAPNLKEGAALG-FAHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPA  150 (338)
T ss_pred             cCCEEEEeCchh--hHHHHHHHHhhhhhcCCceEE-eccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCcee
Confidence            999999999965  3467777 8999999988664 3444443211100111112222222223221          122


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcCC
Q 009395          295 LEIVRTNQTSPQVIVDLLDIGKKIKK  320 (535)
Q Consensus       295 veiv~~~~ts~e~~~~~~~l~~~lGk  320 (535)
                      +.-+. ...+-...+.+..+.+.+|.
T Consensus       151 LiAV~-qD~sG~a~~~Ala~AkgiGg  175 (338)
T COG0059         151 LIAVH-QDASGKALDIALAYAKGIGG  175 (338)
T ss_pred             EEEEE-eCCCchHHHHHHHHHHhcCC
Confidence            22222 23345578888888888884

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=97.15  E-value=0.00027  Score=76.36  Aligned_cols=43  Identities=26%  Similarity=0.390  Sum_probs=40.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR   43 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~   43 (535)
                      |+|||++++|+||++|||||+|||++++++++.++|+++++.+
T Consensus       188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~  230 (546)
T TIGR03222       188 FCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQS  230 (546)
T ss_pred             HHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999999999999999864

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK05086 malate dehydrogenase; Provisional

Probab=97.15  E-value=0.0012  Score=66.95  Aligned_cols=94  Identities=20%  Similarity=0.307  Sum_probs=56.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHh-C--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--ccC-
Q 009395          148 KKVAILGG-GLMGSGIATALIL-S--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLD-  220 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~-~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~-  220 (535)
                      +||+|||+ |.+|.+++..+.. .  +++++++|+++.....+. .+.       ..+         ....+..  .++ 
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~al-Dl~-------~~~---------~~~~i~~~~~~d~   63 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAV-DLS-------HIP---------TAVKIKGFSGEDP   63 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceeh-hhh-------cCC---------CCceEEEeCCCCH
Confidence            58999999 9999999988854 2  468999999854210000 000       000         0012222  334 


Q ss_pred             cccccCCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          221 YESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       221 ~~~~~~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      ++++++||+||.|.-  .            +..+.+++...+.++. ++.+++
T Consensus        64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivi  115 (312)
T PRK05086         64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIG  115 (312)
T ss_pred             HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence            478899999999872  1            2224556666677664 445443

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.15  E-value=0.0015  Score=68.47  Aligned_cols=86  Identities=22%  Similarity=0.180  Sum_probs=60.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.           ..|.             .. .++ +.+++
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-----------~~G~-------------~v-~~l~eal~~  267 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAA-----------MDGF-------------RV-MTMEEAAEL  267 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-----------hcCC-------------Ee-cCHHHHHhC
Confidence            6899999999999999999999999999999987754321           1121             00 112 34678


Q ss_pred             CCEEEEeccCChHHHHHHHH-HHHhhcCCCceeeecCC
Q 009395          227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTS  263 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS  263 (535)
                      +|+||.|+..     ..++. +....++++++++...+
T Consensus       268 aDVVI~aTG~-----~~vI~~~~~~~mK~GailiNvG~  300 (425)
T PRK05476        268 GDIFVTATGN-----KDVITAEHMEAMKDGAILANIGH  300 (425)
T ss_pred             CCEEEECCCC-----HHHHHHHHHhcCCCCCEEEEcCC
Confidence            9999998742     23343 55667889988865443

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.12  E-value=0.0018  Score=56.15  Aligned_cols=103  Identities=20%  Similarity=0.186  Sum_probs=58.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          148 KKVAILGG-GLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      +||+|+|+ |.||+.|+..+.+ .|+++. .+|++++....  +.+-    ..  .|.-        ...+..+++++. 
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g----~~--~~~~--------~~~~~v~~~l~~~   64 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVG----EL--AGIG--------PLGVPVTDDLEEL   64 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCH----HH--CTSS--------T-SSBEBS-HHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhh----hh--hCcC--------CcccccchhHHHh
Confidence            48999999 9999999999988 688854 67887622100  0000    00  0000        012333456644 


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHH
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG  271 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  271 (535)
                      +..+|+||+..  .++...+.++...+   .+..+++.|++++-+++.
T Consensus        65 ~~~~DVvIDfT--~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~  107 (124)
T PF01113_consen   65 LEEADVVIDFT--NPDAVYDNLEYALK---HGVPLVIGTTGFSDEQID  107 (124)
T ss_dssp             TTH-SEEEEES---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHH
T ss_pred             cccCCEEEEcC--ChHHhHHHHHHHHh---CCCCEEEECCCCCHHHHH
Confidence            56799999987  34444444444433   366677788888765543

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.10  E-value=0.00086  Score=66.18  Aligned_cols=70  Identities=17%  Similarity=0.317  Sum_probs=52.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      ++|+|||. |.||.++|..|.++|+.|++|.....                                      ++ +.++
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~  200 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR  200 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence            68999999 99999999999999999999942111                                      22 2368


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      +||+||.|++....+..+       ++++++++++.+
T Consensus       201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvg  230 (284)
T PRK14179        201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVG  230 (284)
T ss_pred             hCCEEEEecCccccCCHH-------HccCCcEEEEec
Confidence            899999999754333322       378899887654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.10  E-value=0.002  Score=67.01  Aligned_cols=98  Identities=23%  Similarity=0.155  Sum_probs=65.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      -++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.           ..|.             ...+..+.+++
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-----------~~G~-------------~v~~leeal~~  250 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-----------MDGF-------------RVMTMEEAAKI  250 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-----------hcCC-------------EeCCHHHHHhc
Confidence            36899999999999999999999999999999987643322           1221             01111134678


Q ss_pred             CCEEEEeccCChHHHHHHHH-HHHhhcCCCceeeecCCc---CcHHHHHhh
Q 009395          227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTST---IDLNLIGER  273 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~---~~~~~l~~~  273 (535)
                      +|+||++...     ..++. +....++++++++..+..   +....+.+.
T Consensus       251 aDVVItaTG~-----~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~  296 (406)
T TIGR00936       251 GDIFITATGN-----KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEEL  296 (406)
T ss_pred             CCEEEECCCC-----HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHH
Confidence            9999998753     23333 356678899887644432   444555543

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=97.09  E-value=0.00092  Score=67.83  Aligned_cols=42  Identities=14%  Similarity=0.151  Sum_probs=34.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCch------------HHHHHHHHHHhhcc
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQL------------VSTARQWALDILEH   42 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l------------~~~a~~~a~~la~~   42 (535)
                      |+++|++++|+||+++||||+|||+.++            ++.+.++++.+...
T Consensus       188 llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  241 (360)
T TIGR03200       188 SGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGE  241 (360)
T ss_pred             HHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCC
Confidence            5789999999999999999999999887            56666667666554

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=97.07  E-value=0.0018  Score=65.07  Aligned_cols=105  Identities=16%  Similarity=0.076  Sum_probs=71.4

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      .-++|+|+|+|.+|..+|+.|...|..+.-+.|++...+...+           .+.             ...+..+.+.
T Consensus       161 ~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~-----------~~~-------------~~~d~~~~~~  216 (336)
T KOG0069|consen  161 EGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYE-----------YYA-------------EFVDIEELLA  216 (336)
T ss_pred             cCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHH-----------hcc-------------cccCHHHHHh
Confidence            3479999999999999999999999444444555544332211           010             0112224578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--HHHHhhc
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERT  274 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~  274 (535)
                      ++|+|+.|.|-+.+...-+=+++...++++.+++...-+--+  ..+.+.+
T Consensus       217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL  267 (336)
T KOG0069|consen  217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL  267 (336)
T ss_pred             hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH
Confidence            999999999998887666667888999999988755444333  3555555

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.06  E-value=0.002  Score=64.98  Aligned_cols=91  Identities=15%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             cceEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++|+|||+|.+|...+..++. .+. +|.+|++++++.+...+++..       .+.           .+. ..+. +.
T Consensus       125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~~-----------~~~-~~~~~~a  185 (304)
T PRK07340        125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LGP-----------TAE-PLDGEAI  185 (304)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------eeE-ECCHHHH
Confidence            3579999999999999999864 564 799999999987766543321       110           111 2333 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +.+||+||.|.|....    ++..   .+++++.|....|
T Consensus       186 v~~aDiVitaT~s~~P----l~~~---~~~~g~hi~~iGs  218 (304)
T PRK07340        186 PEAVDLVVTATTSRTP----VYPE---AARAGRLVVAVGA  218 (304)
T ss_pred             hhcCCEEEEccCCCCc----eeCc---cCCCCCEEEecCC
Confidence            7899999999986543    3322   3578876655544

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=97.05  E-value=0.00035  Score=75.67  Aligned_cols=43  Identities=23%  Similarity=0.350  Sum_probs=40.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR   43 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~   43 (535)
                      |+|||++++|+||+++||||+|||++++++.+.++|+++++.+
T Consensus       192 llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~  234 (550)
T PRK08184        192 FCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAAS  234 (550)
T ss_pred             HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999999999999999874

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.04  E-value=0.0026  Score=58.19  Aligned_cols=76  Identities=25%  Similarity=0.263  Sum_probs=54.8

Q ss_pred             ceEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|.|||+|.| |..+|..|.+.|.+|++.+++.+.+.                                     +.+.+
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~   87 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ   87 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence            68999999997 88899999999999999998753321                                     23678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      ||+||.|++...-+..+       .++++.++++.+..-.+
T Consensus        88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv  121 (168)
T cd01080          88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP  121 (168)
T ss_pred             CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence            99999999753222222       24556777766654443

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.03  E-value=0.0024  Score=55.09  Aligned_cols=100  Identities=22%  Similarity=0.217  Sum_probs=58.7

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhC-CCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCcccc
Q 009395          149 KVAILGG-GLMGSGIATALILS-NYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYESF  224 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~-G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~  224 (535)
                      ||+|||+ |.+|..++..+... ++++..+ +++.+.-+.+.    .      ..+.++...    ..  ..+ .+++ .
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~----~------~~~~~~~~~----~~--~~~~~~~~-~   63 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS----E------AGPHLKGEV----VL--ELEPEDFE-E   63 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH----H------HCccccccc----cc--ccccCChh-h
Confidence            5899995 99999999988885 8887766 55432211111    0      001010000    00  011 1122 2


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      .++|+||.|+|.+..  .+++..+...+.+++++++.+|++..
T Consensus        64 ~~~DvV~~~~~~~~~--~~~~~~~~~~~~~g~~viD~s~~~~~  104 (122)
T smart00859       64 LAVDIVFLALPHGVS--KEIAPLLPKAAEAGVKVIDLSSAFRM  104 (122)
T ss_pred             cCCCEEEEcCCcHHH--HHHHHHHHhhhcCCCEEEECCccccC
Confidence            489999999997643  34433445556789999888887654

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.03  E-value=0.0011  Score=71.71  Aligned_cols=67  Identities=15%  Similarity=0.149  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCC---CCcchhhhhcC-cchHHHHHHHHHhHh
Q 009395          459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP---PYRFVTFIHRG-FSKSSSCFKNLLCYF  526 (535)
Q Consensus       459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~---~~~~g~~~~~G-~~~~~~~~~~~~~~~  526 (535)
                      ..++.||++.++++||+.++++|++ ++++||.++..|+|++   +|||.++|+.| .+.+.+.++++.+.+
T Consensus       184 ~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~~~  254 (495)
T PRK07531        184 DAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGPCL  254 (495)
T ss_pred             cchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhchhh
Confidence            4689999999999999999999998 9999999999998876   78888888887 445666666655443

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.01  E-value=0.0012  Score=65.83  Aligned_cols=71  Identities=21%  Similarity=0.218  Sum_probs=51.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      ++|.|+|+|.+|.+++..|+..| .+|++++|+.++.+...+.+..       .+            .+....+. +.+.
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~-------~~------------~~~~~~~~~~~~~  184 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA-------LG------------KAELDLELQEELA  184 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh-------cc------------ceeecccchhccc
Confidence            57999999999999999999999 6899999999887655432210       00            01111111 4467


Q ss_pred             CCCEEEEeccCC
Q 009395          226 DVDMVIEAIIEN  237 (535)
Q Consensus       226 ~aDlVI~avpe~  237 (535)
                      ++|+||.|+|..
T Consensus       185 ~~DivInaTp~g  196 (278)
T PRK00258        185 DFDLIINATSAG  196 (278)
T ss_pred             cCCEEEECCcCC
Confidence            899999999854

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.98  E-value=0.0014  Score=66.78  Aligned_cols=100  Identities=19%  Similarity=0.249  Sum_probs=62.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCC-------CcEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHH-hhhcccc
Q 009395          148 KKVAILGG-GLMGSGIATALILSN-------YPVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFE-KTISLLT  216 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G-------~~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~-~~~~~i~  216 (535)
                      .||+|+|+ |.+|+.++..|+..+       .+|+++|+++..  ++.....+.               +.. .....+.
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~---------------d~~~~~~~~~~   67 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQ---------------DCAFPLLKSVV   67 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehh---------------hccccccCCce
Confidence            47999999 999999999998855       489999996531  221000000               000 0012333


Q ss_pred             cccC-cccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          217 GVLD-YESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       217 ~~~~-~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ...+ ++++++||+||.+.  |.            +..+.+++...+.++.+++++++..|
T Consensus        68 ~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (325)
T cd01336          68 ATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG  128 (325)
T ss_pred             ecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            3345 47899999999876  11            22344666677888876677555444

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.94  E-value=0.0089  Score=56.51  Aligned_cols=129  Identities=21%  Similarity=0.241  Sum_probs=75.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|.|||+|.+|...+..|..+|.+|++++++.. .+...           .+.+.+.         ...-.-..+.+.+
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l-----------~~~~~i~---------~~~~~~~~~~l~~   70 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKL-----------VEEGKIR---------WKQKEFEPSDIVD   70 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHH-----------HhCCCEE---------EEecCCChhhcCC
Confidence            6899999999999999999999999999986532 11111           1122111         0000111245789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCC--CCCCEEEEEeCCCCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS  304 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~ts  304 (535)
                      +|+||-|+. +.++-..+..    .+..+. ++.+...            |+.   ..|+.|+  ..++++.-+...+.+
T Consensus        71 adlViaaT~-d~elN~~i~~----~a~~~~-lvn~~d~------------~~~---~~f~~Pa~~~~g~l~iaIsT~G~s  129 (202)
T PRK06718         71 AFLVIAATN-DPRVNEQVKE----DLPENA-LFNVITD------------AES---GNVVFPSALHRGKLTISVSTDGAS  129 (202)
T ss_pred             ceEEEEcCC-CHHHHHHHHH----HHHhCC-cEEECCC------------Ccc---CeEEEeeEEEcCCeEEEEECCCCC
Confidence            999998875 4455444433    233333 3332221            111   2344554  335666666777778


Q ss_pred             HHHHHHHHHHHHh
Q 009395          305 PQVIVDLLDIGKK  317 (535)
Q Consensus       305 ~e~~~~~~~l~~~  317 (535)
                      |.....+++-++.
T Consensus       130 P~la~~lr~~ie~  142 (202)
T PRK06718        130 PKLAKKIRDELEA  142 (202)
T ss_pred             hHHHHHHHHHHHH
Confidence            8777766666554

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.92  E-value=0.0015  Score=61.45  Aligned_cols=41  Identities=24%  Similarity=0.308  Sum_probs=35.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|+|+ |.+|..++..|++.|++|++++|+.++++...+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~   70 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD   70 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            57999996 999999999999999999999999887765543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.91  E-value=0.0023  Score=65.26  Aligned_cols=93  Identities=13%  Similarity=0.166  Sum_probs=62.2

Q ss_pred             cceEEEEeCChhhHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++|+|||+|.+|...+..++ ..++ +|.+||+++++.++..+.+...+      +.           .+....++ +.
T Consensus       127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~~-----------~~~~~~~~~~~  189 (325)
T PRK08618        127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------NT-----------EIYVVNSADEA  189 (325)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------CC-----------cEEEeCCHHHH
Confidence            357999999999999887765 3454 89999999998876654432111      10           11223344 35


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +.++|+||.|.|...    .++.   ..+++++.|.+..|
T Consensus       190 ~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV~~iGs  222 (325)
T PRK08618        190 IEEADIIVTVTNAKT----PVFS---EKLKKGVHINAVGS  222 (325)
T ss_pred             HhcCCEEEEccCCCC----cchH---HhcCCCcEEEecCC
Confidence            789999999998652    3333   35678887765554

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.91  E-value=0.0055  Score=57.42  Aligned_cols=92  Identities=20%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          148 KKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      .+|++||+|.+|..+...+...  .+ .|.+||++.+++..+.+.                      .. ....+++++ 
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~----------------------~~-~~~~s~ide~   57 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEAS----------------------VG-RRCVSDIDEL   57 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhh----------------------cC-CCccccHHHH
Confidence            3799999999999998866533  24 578999999987654321                      01 112355655 


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  266 (535)
                      +.+.|+|+||..  .+..++...++.+. .-++|+.|. +.+.
T Consensus        58 ~~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~SV-GALa   96 (255)
T COG1712          58 IAEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMSV-GALA   96 (255)
T ss_pred             hhccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEec-hhcc
Confidence            489999999985  34445554444432 335666654 3444

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.90  E-value=0.0014  Score=69.08  Aligned_cols=39  Identities=23%  Similarity=0.296  Sum_probs=34.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~  186 (535)
                      ++|+|||+|.||..++..|...| .+|++++++.++.+..
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~l  220 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDL  220 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            68999999999999999999999 6899999998876543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.90  E-value=0.0025  Score=67.21  Aligned_cols=88  Identities=23%  Similarity=0.296  Sum_probs=61.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+.           ..|.             . ..++ +.++.
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-----------~~G~-------------~-~~~leell~~  309 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-----------MEGY-------------Q-VVTLEDVVET  309 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-----------hcCc-------------e-eccHHHHHhc
Confidence            6899999999999999999999999999999877643221           1121             0 1123 34688


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCc
Q 009395          227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTID  266 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~  266 (535)
                      ||+||.|.. .    +.++ .+..+.++++++++ |++...
T Consensus       310 ADIVI~atG-t----~~iI~~e~~~~MKpGAiLI-NvGr~d  344 (476)
T PTZ00075        310 ADIFVTATG-N----KDIITLEHMRRMKNNAIVG-NIGHFD  344 (476)
T ss_pred             CCEEEECCC-c----ccccCHHHHhccCCCcEEE-EcCCCc
Confidence            999999863 2    2344 35566688999886 455444

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.89  E-value=0.0041  Score=63.45  Aligned_cols=73  Identities=19%  Similarity=0.197  Sum_probs=52.3

Q ss_pred             ceEEEEeCChhhHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009395          148 KKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  224 (535)
                      ++++|||+|.+|...+..++ ..++ +|++|+|++++.+...+++...+      |.           .+...++++ .+
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g~-----------~v~~~~~~~~av  192 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------GI-----------DVTAATDPRAAM  192 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------Cc-----------eEEEeCCHHHHh
Confidence            57999999999999999887 4675 69999999998877654432111      10           122234443 47


Q ss_pred             cCCCEEEEeccCC
Q 009395          225 KDVDMVIEAIIEN  237 (535)
Q Consensus       225 ~~aDlVI~avpe~  237 (535)
                      .+||+||.|+|..
T Consensus       193 ~~aDiVvtaT~s~  205 (326)
T TIGR02992       193 SGADIIVTTTPSE  205 (326)
T ss_pred             ccCCEEEEecCCC
Confidence            8999999999764

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.89  E-value=0.0033  Score=65.25  Aligned_cols=41  Identities=24%  Similarity=0.301  Sum_probs=36.4

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      +..+|.|||+|.+|...+..+...|.+|+++|+++++++.+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l  206 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL  206 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence            34679999999999999999999999999999998876544

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.86  E-value=0.0076  Score=57.12  Aligned_cols=130  Identities=16%  Similarity=0.219  Sum_probs=76.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|.|||+|.+|..-+..|++.|.+|++++.+.. .+..           ..+.|.+.         .+...-..+++.+
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~-----------l~~~~~i~---------~~~~~~~~~dl~~   69 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL-----------LAEQGGIT---------WLARCFDADILEG   69 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH-----------HHHcCCEE---------EEeCCCCHHHhCC
Confidence            5899999999999999999999999999987643 1111           11222211         1111112245789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCC--CCCCEEEEEeCCCCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQTS  304 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~ts  304 (535)
                      +|+||.|.. +.++-..+...    +....+++.+.+....               ..|+.|+  ..++++.-+...+.+
T Consensus        70 ~~lVi~at~-d~~ln~~i~~~----a~~~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~s  129 (205)
T TIGR01470        70 AFLVIAATD-DEELNRRVAHA----ARARGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAA  129 (205)
T ss_pred             cEEEEECCC-CHHHHHHHHHH----HHHcCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCC
Confidence            999998864 55554554443    3333344432322111               2244553  345566666666778


Q ss_pred             HHHHHHHHHHHHh
Q 009395          305 PQVIVDLLDIGKK  317 (535)
Q Consensus       305 ~e~~~~~~~l~~~  317 (535)
                      |.....+++-++.
T Consensus       130 P~la~~lr~~ie~  142 (205)
T TIGR01470       130 PVLARLLRERIET  142 (205)
T ss_pred             cHHHHHHHHHHHH
Confidence            8776666665554

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.83  E-value=0.0058  Score=59.45  Aligned_cols=75  Identities=17%  Similarity=0.157  Sum_probs=48.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      .||+|||+|.||..++..+.+.+   ++ +.++++++++.+....                         .....+++++
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~   57 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG   57 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence            58999999999999999886543   44 4467887765443210                         1223445665


Q ss_pred             c--cCCCEEEEeccCChHHHHHHHHHHH
Q 009395          224 F--KDVDMVIEAIIENVSLKQQIFADLE  249 (535)
Q Consensus       224 ~--~~aDlVI~avpe~~~~k~~v~~~l~  249 (535)
                      +  ...|+|+||..  .+..++.-..+.
T Consensus        58 ll~~~~DlVVE~A~--~~av~e~~~~iL   83 (267)
T PRK13301         58 LLAWRPDLVVEAAG--QQAIAEHAEGCL   83 (267)
T ss_pred             HhhcCCCEEEECCC--HHHHHHHHHHHH
Confidence            3  68999999996  334444444433

>PLN00203 glutamyl-tRNA reductase

Probab=96.83  E-value=0.0019  Score=69.51  Aligned_cols=41  Identities=20%  Similarity=0.309  Sum_probs=36.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      -++|+|||+|.||..++..|...|. +|++++++.++.+...
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La  307 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALR  307 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Confidence            4689999999999999999999997 7999999998876543

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=96.83  E-value=0.052  Score=52.42  Aligned_cols=106  Identities=16%  Similarity=0.142  Sum_probs=74.0

Q ss_pred             ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhc---CC-CCcEEeecccCCCCCCC
Q 009395          218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT---YS-KDRIVGAHFFSPAHVMP  293 (535)
Q Consensus       218 ~~~~~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~---~~-~~r~ig~h~~~P~~~~~  293 (535)
                      ++|.++++++|++|.-.|..-. --.+.+++.+++++++|| +||.|+|...+...+   ++ .-.+..+||-. +..++
T Consensus       133 sDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII-~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa-VPgt~  209 (342)
T PRK00961        133 TDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIV-THACTIPTTKFAKIFKDLGRDDLNVTSYHPGA-VPEMK  209 (342)
T ss_pred             cCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEE-eccccCCHHHHHHHHHHhCcccCCeeccCCCC-CCCCC
Confidence            4567889999999999986432 247888999999999987 578888877665544   32 22344455532 11122


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       294 lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      .-.++.-...++|+++.+.++.+..|+.++.+.
T Consensus       210 Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P  242 (342)
T PRK00961        210 GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP  242 (342)
T ss_pred             CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence            222333445789999999999999999999885

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.80  E-value=0.0038  Score=66.11  Aligned_cols=40  Identities=25%  Similarity=0.246  Sum_probs=35.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG  186 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~  186 (535)
                      -++|+|||+|.||..++..+...|. +|+++++++++.+..
T Consensus       182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l  222 (423)
T PRK00045        182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEEL  222 (423)
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence            3689999999999999999999997 799999999876543

>PLN02494 adenosylhomocysteinase

Probab=96.78  E-value=0.0033  Score=66.18  Aligned_cols=97  Identities=19%  Similarity=0.235  Sum_probs=65.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.           ..|.             ... ++ +.++.
T Consensus       255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~-----------~~G~-------------~vv-~leEal~~  309 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQAL-----------MEGY-------------QVL-TLEDVVSE  309 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHH-----------hcCC-------------eec-cHHHHHhh
Confidence            6899999999999999999999999999999987643322           1121             001 12 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC---cCcHHHHHhh
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS---TIDLNLIGER  273 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS---~~~~~~l~~~  273 (535)
                      +|+||++....    ..+..+....++++++++....   -+....|.+.
T Consensus       310 ADVVI~tTGt~----~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~  355 (477)
T PLN02494        310 ADIFVTTTGNK----DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY  355 (477)
T ss_pred             CCEEEECCCCc----cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence            99999876432    1233556667899998875444   2344455443

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.74  E-value=0.0037  Score=67.10  Aligned_cols=70  Identities=21%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      ++++|+|+|.+|.+++..++..|++|+++|++.++.+...+.+        .....+             ..+...+.++
T Consensus       333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~--------~~~~~~-------------~~~~~~l~~~  391 (477)
T PRK09310        333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRC--------QGKAFP-------------LESLPELHRI  391 (477)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------ccceec-------------hhHhcccCCC
Confidence            6899999999999999999999999999999988765443211        000010             1122336789


Q ss_pred             CEEEEeccCCh
Q 009395          228 DMVIEAIIENV  238 (535)
Q Consensus       228 DlVI~avpe~~  238 (535)
                      |+||.|+|...
T Consensus       392 DiVInatP~g~  402 (477)
T PRK09310        392 DIIINCLPPSV  402 (477)
T ss_pred             CEEEEcCCCCC
Confidence            99999998654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.71  E-value=0.0044  Score=61.89  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=36.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|||+|-+|++++..|+..|. +|++++|+.++.+...+
T Consensus       126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~  167 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD  167 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            579999999999999999999997 69999999988766543

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.69  E-value=0.0068  Score=61.98  Aligned_cols=74  Identities=23%  Similarity=0.253  Sum_probs=52.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHh-CC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALIL-SN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~-~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++|+|||+|.+|...+..++. .+ .+|++|+|++++.+...+.+++.+      | +          .+...+++ +.
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-~----------~v~~~~d~~~a  194 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-I----------PVTVARDVHEA  194 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-c----------eEEEeCCHHHH
Confidence            3589999999999998888874 45 479999999999877654432111      1 0          12223444 44


Q ss_pred             ccCCCEEEEeccCC
Q 009395          224 FKDVDMVIEAIIEN  237 (535)
Q Consensus       224 ~~~aDlVI~avpe~  237 (535)
                      +.+||+||.|.|..
T Consensus       195 l~~aDiVi~aT~s~  208 (330)
T PRK08291        195 VAGADIIVTTTPSE  208 (330)
T ss_pred             HccCCEEEEeeCCC
Confidence            78899999998754

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=96.68  E-value=0.088  Score=50.98  Aligned_cols=105  Identities=16%  Similarity=0.202  Sum_probs=73.2

Q ss_pred             ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhh---cCC-CCcEEeecccC-CCCCC
Q 009395          218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER---TYS-KDRIVGAHFFS-PAHVM  292 (535)
Q Consensus       218 ~~~~~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~~-~~r~ig~h~~~-P~~~~  292 (535)
                      ++|.++++++|++|.-.|..-. --.+.+++.+.+++++|| +||.|+|...+...   +++ .-.+..+||-. |-...
T Consensus       131 sDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII-~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVPgt~~  208 (340)
T TIGR01723       131 TDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIV-THACTIPTTKFAKIFEDLGREDLNVTSYHPGCVPEMKG  208 (340)
T ss_pred             cCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEE-eccccCChHHHHHHHHhhCcccCCeeccCCCCCCCCCC
Confidence            4567889999999999986432 247788899999999987 57878877655443   332 22344455532 21112


Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      + + ++.-...++|+++...++.+..|+.++.+.
T Consensus       209 q-~-Yi~egyAtEEqI~klveL~~sa~k~ay~~P  240 (340)
T TIGR01723       209 Q-V-YIAEGYASEEAVNKLYELGKKARGKAFKMP  240 (340)
T ss_pred             c-e-EeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence            2 2 223445789999999999999999999885

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.68  E-value=0.024  Score=48.45  Aligned_cols=67  Identities=28%  Similarity=0.330  Sum_probs=47.2

Q ss_pred             eEEEEeCChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395          149 KVAILGGGLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (535)
                      ||+|||+|.+|......+.+.  +.+| .++|+++++.+...+.          .             .+...+++++ +
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~----------~-------------~~~~~~~~~~ll   58 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK----------Y-------------GIPVYTDLEELL   58 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------T-------------TSEEESSHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH----------h-------------cccchhHHHHHH
Confidence            799999999999999888777  4565 4789999887654311          1             1223445543 3


Q ss_pred             --cCCCEEEEeccCCh
Q 009395          225 --KDVDMVIEAIIENV  238 (535)
Q Consensus       225 --~~aDlVI~avpe~~  238 (535)
                        .+.|+|+.|+|...
T Consensus        59 ~~~~~D~V~I~tp~~~   74 (120)
T PF01408_consen   59 ADEDVDAVIIATPPSS   74 (120)
T ss_dssp             HHTTESEEEEESSGGG
T ss_pred             HhhcCCEEEEecCCcc
Confidence              37899999998654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06046 alanine dehydrogenase; Validated

Probab=96.67  E-value=0.0072  Score=61.68  Aligned_cols=93  Identities=16%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      .++|+|||+|.+|...+..+... ++ .|.+||+++++.++..+.+.+.+      +.           .+...+++++ 
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~~-----------~v~~~~~~~~~  191 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------GC-----------DVTVAEDIEEA  191 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------Cc-----------eEEEeCCHHHH
Confidence            45899999999999999888743 44 78899999998877654432110      10           1222344443 


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +. +|+|+.|.|....    +|.  .+.+++++.|.+..|
T Consensus       192 l~-aDiVv~aTps~~P----~~~--~~~l~~g~hV~~iGs  224 (326)
T PRK06046        192 CD-CDILVTTTPSRKP----VVK--AEWIKEGTHINAIGA  224 (326)
T ss_pred             hh-CCEEEEecCCCCc----Eec--HHHcCCCCEEEecCC
Confidence            44 9999999986432    221  124567776655444

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.65  E-value=0.025  Score=56.37  Aligned_cols=163  Identities=14%  Similarity=0.175  Sum_probs=84.1

Q ss_pred             cceEEEEeCChhhHHHHHHHH-hCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          147 VKKVAILGGGLMGSGIATALI-LSNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~-~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      .-||++||+|.||+.|+.... -.|++|+. -|++.....++.++.-..-...++....+.....-..+++..|+|.+.+
T Consensus        17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i   96 (438)
T COG4091          17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELI   96 (438)
T ss_pred             ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhh
Confidence            357999999999999987665 45998765 5888777665543210000001111111111111122455566666543


Q ss_pred             ---cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-cCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeC
Q 009395          225 ---KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-TIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT  300 (535)
Q Consensus       225 ---~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~  300 (535)
                         ...|+||++.--...--+-.+..|.   ....++..|.- -+++..+-+..   .+-.|+-            +..+
T Consensus        97 ~~~~~IdvIIdATG~p~vGA~~~l~Ai~---h~KHlVMmNVEaDvtIGp~Lk~~---Ad~~Gvi------------yS~~  158 (438)
T COG4091          97 IANDLIDVIIDATGVPEVGAKIALEAIL---HGKHLVMMNVEADVTIGPILKQQ---ADAAGVI------------YSGG  158 (438)
T ss_pred             hcCCcceEEEEcCCCcchhhHhHHHHHh---cCCeEEEEEeeeceeecHHHHHH---HhhcCeE------------Eecc
Confidence               4568899986221112223333333   33445544532 22222221111   0112322            2222


Q ss_pred             CCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          301 NQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       301 ~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                      ..-.|...-.+.+|.+++|..++..+.
T Consensus       159 ~GDeP~~~mEL~efa~a~G~evv~aGK  185 (438)
T COG4091         159 AGDEPSSCMELYEFASALGFEVVSAGK  185 (438)
T ss_pred             CCCCcHHHHHHHHHHHhcCCeEEeccC
Confidence            233456667788899999999998863

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.65  E-value=0.0046  Score=56.20  Aligned_cols=38  Identities=32%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~  185 (535)
                      +||+|||+ |..|+.|+.-..+.||+|+.+-||++++..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~   39 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA   39 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence            58999999 999999999999999999999999998743

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.64  E-value=0.0057  Score=52.74  Aligned_cols=98  Identities=20%  Similarity=0.199  Sum_probs=57.9

Q ss_pred             eEEEEe-CChhhHHHHHHHHhCC-Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc-Ccccc
Q 009395          149 KVAILG-GGLMGSGIATALILSN-YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL-DYESF  224 (535)
Q Consensus       149 kV~vIG-~G~mG~~iA~~l~~~G-~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~  224 (535)
                      ||+||| +|.+|+.+...|.++- ++ +.++.++.+.-....    .    ....        ......+.... +.+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~----~----~~~~--------~~~~~~~~~~~~~~~~~   64 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS----E----VFPH--------PKGFEDLSVEDADPEEL   64 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH----H----TTGG--------GTTTEEEBEEETSGHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee----h----hccc--------cccccceeEeecchhHh
Confidence            799999 7999999999998853 35 445666552211110    0    0000        00011222222 44568


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      .++|+||.|+|..  ...++...+   +..++.++++++.+..
T Consensus        65 ~~~Dvvf~a~~~~--~~~~~~~~~---~~~g~~ViD~s~~~R~  102 (121)
T PF01118_consen   65 SDVDVVFLALPHG--ASKELAPKL---LKAGIKVIDLSGDFRL  102 (121)
T ss_dssp             TTESEEEE-SCHH--HHHHHHHHH---HHTTSEEEESSSTTTT
T ss_pred             hcCCEEEecCchh--HHHHHHHHH---hhCCcEEEeCCHHHhC
Confidence            9999999999854  344555544   4578888888887644

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.63  E-value=0.024  Score=57.23  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~  180 (535)
                      .||+|||+|.||..++..+.++ +++++ ++|+++
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~   38 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG   38 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence            5899999999999999988765 78876 579985

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.62  E-value=0.0046  Score=60.84  Aligned_cols=66  Identities=21%  Similarity=0.231  Sum_probs=43.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      .||+|+|+ |.||..++..+.+. +++++ ++|++++.....           ...             .+...++++. 
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----------~~~-------------~i~~~~dl~~l   57 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----------GAL-------------GVAITDDLEAV   57 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----------CCC-------------CccccCCHHHh
Confidence            58999998 99999999888764 67765 588887653211           000             1222345543 


Q ss_pred             ccCCCEEEEeccCC
Q 009395          224 FKDVDMVIEAIIEN  237 (535)
Q Consensus       224 ~~~aDlVI~avpe~  237 (535)
                      +.++|+||++.|++
T Consensus        58 l~~~DvVid~t~p~   71 (257)
T PRK00048         58 LADADVLIDFTTPE   71 (257)
T ss_pred             ccCCCEEEECCCHH
Confidence            45799999888644

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.52  E-value=0.0047  Score=58.48  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=30.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~  179 (535)
                      +||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            579999999999999999999998 89999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.46  E-value=0.014  Score=59.08  Aligned_cols=93  Identities=15%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++++|||+|.++...+..++.- . -+|.+|++++++.++..+.+++       .+.           .+...++. +.
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~~-----------~v~~~~~~~~a  189 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LGF-----------AVNTTLDAAEV  189 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cCC-----------cEEEECCHHHH
Confidence            45799999999999998877643 2 3899999999998766543221       110           12233444 55


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +++||+|+.|.+....    +|.  .+.+++++.|....|
T Consensus       190 v~~ADIV~taT~s~~P----~~~--~~~l~~G~hi~~iGs  223 (315)
T PRK06823        190 AHAANLIVTTTPSREP----LLQ--AEDIQPGTHITAVGA  223 (315)
T ss_pred             hcCCCEEEEecCCCCc----eeC--HHHcCCCcEEEecCC
Confidence            8999999999875432    232  134667876655544

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.39  E-value=0.0087  Score=58.92  Aligned_cols=100  Identities=19%  Similarity=0.174  Sum_probs=52.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---
Q 009395          147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---  220 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---  220 (535)
                      .+||++||.|.+-...-......  |..|..+|+++++.+.+.+-++...            ...   .++++. .|   
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~------------~L~---~~m~f~~~d~~~  185 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL------------GLS---KRMSFITADVLD  185 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---------------HH----SSEEEEES-GGG
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc------------ccc---CCeEEEecchhc
Confidence            45999999999976654443333  4578899999999887654332111            000   122221 12   


Q ss_pred             c-ccccCCCEEEEec--cCChHHHHHHHHHHHhhcCCCceeeec
Q 009395          221 Y-ESFKDVDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASN  261 (535)
Q Consensus       221 ~-~~~~~aDlVI~av--pe~~~~k~~v~~~l~~~~~~~~ii~s~  261 (535)
                      . .++.++|+|+.|.  ..+.+-|.+++..|.++++++++++.-
T Consensus       186 ~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  186 VTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             G-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             cccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            1 3468899999986  334456899999999999999987754

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.36  E-value=0.0091  Score=61.95  Aligned_cols=40  Identities=25%  Similarity=0.275  Sum_probs=36.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|||+|-||.-.|.+|+.+|. .|++.+|+.++.....
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La  219 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELA  219 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence            579999999999999999999995 8999999999877654

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.36  E-value=0.0069  Score=55.94  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=32.5

Q ss_pred             EEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009395          150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE  184 (535)
Q Consensus       150 V~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~  184 (535)
                      |.|+|+ |.+|..++..|++.|++|+++-|++++++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~   36 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAE   36 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcc
Confidence            789997 99999999999999999999999998765

...

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.35  E-value=0.011  Score=58.75  Aligned_cols=42  Identities=24%  Similarity=0.204  Sum_probs=37.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~  189 (535)
                      ++|.|+|+|-++++++..|++.|. ++++++|+.++.+++.+.
T Consensus       127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~  169 (283)
T COG0169         127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL  169 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence            689999999999999999999995 799999999998766543

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.34  E-value=0.0094  Score=60.03  Aligned_cols=94  Identities=18%  Similarity=0.205  Sum_probs=61.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++++|||+|.+|...+..++.- .+ +|.+|++++++.++..+++...+      |.           .+...++. +.
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~~-----------~v~~~~~~~ea  179 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------GV-----------DIRPVDNAEAA  179 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------CC-----------cEEEeCCHHHH
Confidence            46899999999999988877653 33 79999999999887665433211      10           13333444 55


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +.+||+|+.|.+....    ++.  .+.+++++.|....|
T Consensus       180 v~~aDIV~taT~s~~P----~~~--~~~l~pg~hV~aiGs  213 (301)
T PRK06407        180 LRDADTITSITNSDTP----IFN--RKYLGDEYHVNLAGS  213 (301)
T ss_pred             HhcCCEEEEecCCCCc----Eec--HHHcCCCceEEecCC
Confidence            8999999999875432    221  124567765554444

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.30  E-value=0.0096  Score=60.92  Aligned_cols=33  Identities=27%  Similarity=0.467  Sum_probs=31.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      ++|.|||+|.+|+.+|..|++.|+ +++++|.+.
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            579999999999999999999998 899999985

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.29  E-value=0.013  Score=57.94  Aligned_cols=72  Identities=15%  Similarity=0.279  Sum_probs=53.6

Q ss_pred             ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|+|||.|. +|.++|..|.+.|..|++++.....+.                                     +.+++
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~  201 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD  201 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence            6899999987 999999999999999999987542211                                     23578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ||+||.|++..-     ++..  +.+++++++++..+
T Consensus       202 ADIVIsAvg~p~-----~i~~--~~vk~gavVIDvGi  231 (286)
T PRK14175        202 ADVIVSAVGKPG-----LVTK--DVVKEGAVIIDVGN  231 (286)
T ss_pred             CCEEEECCCCCc-----ccCH--HHcCCCcEEEEcCC
Confidence            999999997432     1221  24678888876554

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.29  E-value=0.04  Score=63.87  Aligned_cols=77  Identities=22%  Similarity=0.242  Sum_probs=51.8

Q ss_pred             CCCcceEEEEeCChhhHHHHHHHHhC-CCc-------------EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 009395          144 PRRVKKVAILGGGLMGSGIATALILS-NYP-------------VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFE  209 (535)
Q Consensus       144 ~~~~~kV~vIG~G~mG~~iA~~l~~~-G~~-------------V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~  209 (535)
                      ...++||+|||+|.||..+|..|++. +++             |++.|++.+.++.+.+..         .+ ++     
T Consensus       566 ~~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---------~~-~~-----  630 (1042)
T PLN02819        566 TKKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---------EN-AE-----  630 (1042)
T ss_pred             cccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---------CC-Cc-----
Confidence            34578999999999999999999875 334             999999988876543211         01 00     


Q ss_pred             hhhccccc-ccCcc----cccCCCEEEEeccCChH
Q 009395          210 KTISLLTG-VLDYE----SFKDVDMVIEAIIENVS  239 (535)
Q Consensus       210 ~~~~~i~~-~~~~~----~~~~aDlVI~avpe~~~  239 (535)
                          .+.. ..|.+    .++++|+||.|+|....
T Consensus       631 ----~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H  661 (1042)
T PLN02819        631 ----AVQLDVSDSESLLKYVSQVDVVISLLPASCH  661 (1042)
T ss_pred             ----eEEeecCCHHHHHHhhcCCCEEEECCCchhh
Confidence                0111 12322    24679999999997543

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.24  E-value=0.041  Score=57.32  Aligned_cols=76  Identities=20%  Similarity=0.207  Sum_probs=49.5

Q ss_pred             cceEEEEeCChhhHHHH-HHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          147 VKKVAILGGGLMGSGIA-TALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA-~~l~~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      ..||+|||+|..+.+-- ..++..     +.++.++|+++++++...    ....+.++.-..+        -++..++|
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~----~~~~~~v~~~g~~--------~kv~~ttd   70 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIA----ILAKKLVEEAGAP--------VKVEATTD   70 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHH----HHHHHHHHhhCCC--------eEEEEecC
Confidence            45899999998876643 222222     458999999999987322    2222333321111        24666777


Q ss_pred             c-ccccCCCEEEEec
Q 009395          221 Y-ESFKDVDMVIEAI  234 (535)
Q Consensus       221 ~-~~~~~aDlVI~av  234 (535)
                      . +++.+||+||.++
T Consensus        71 ~~eAl~gAdfVi~~~   85 (442)
T COG1486          71 RREALEGADFVITQI   85 (442)
T ss_pred             HHHHhcCCCEEEEEE
Confidence            7 5799999999887

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.23  E-value=0.011  Score=58.42  Aligned_cols=68  Identities=19%  Similarity=0.223  Sum_probs=42.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  224 (535)
                      .||+|||+|.||..++..+.+. +.++.. ++++.. .+...+.        ...             .+..+++++++ 
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~~-------------~~~~~~d~~~l~   59 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LGE-------------AVRVVSSVDALP   59 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hcc-------------CCeeeCCHHHhc
Confidence            5899999999999999998876 566543 343221 1111100        000             12334556554 


Q ss_pred             cCCCEEEEeccCC
Q 009395          225 KDVDMVIEAIIEN  237 (535)
Q Consensus       225 ~~aDlVI~avpe~  237 (535)
                      .+.|+|++|.|..
T Consensus        60 ~~~DvVve~t~~~   72 (265)
T PRK13303         60 QRPDLVVECAGHA   72 (265)
T ss_pred             cCCCEEEECCCHH
Confidence            5689999999854

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.22  E-value=0.055  Score=48.96  Aligned_cols=31  Identities=29%  Similarity=0.292  Sum_probs=29.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      ++|.|||+|.+|...+..|...|++|++++.
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            6899999999999999999999999999964

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.21  E-value=0.035  Score=53.51  Aligned_cols=32  Identities=25%  Similarity=0.427  Sum_probs=30.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCc---EEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYP---VILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~---V~l~d~~  179 (535)
                      +||.|+|+|.+|.++|..|...|..   |+++|++
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            5899999999999999999999975   9999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.20  E-value=0.023  Score=60.97  Aligned_cols=42  Identities=19%  Similarity=0.081  Sum_probs=37.9

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      +-.||.|+|+|.+|...+..+...|.+|+++|+++++++.+.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~ae  205 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVE  205 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            357999999999999999999999999999999999987664

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.20  E-value=0.014  Score=59.05  Aligned_cols=94  Identities=16%  Similarity=0.174  Sum_probs=62.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .+.++|||+|.++......+..- + -+|.+|+++++..++...++.+.+       .          ..+...++. ++
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~-------~----------~~v~a~~s~~~a  192 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRG-------G----------EAVGAADSAEEA  192 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhc-------C----------ccceeccCHHHH
Confidence            45799999999999998877643 3 489999999999887765433221       1          012334444 56


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +++||+|+.|+|.+..+    +.  .+.+++++-|....|
T Consensus       193 v~~aDiIvt~T~s~~Pi----l~--~~~l~~G~hI~aiGa  226 (330)
T COG2423         193 VEGADIVVTATPSTEPV----LK--AEWLKPGTHINAIGA  226 (330)
T ss_pred             hhcCCEEEEecCCCCCe----ec--HhhcCCCcEEEecCC
Confidence            89999999999865422    21  234567776544333

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.19  E-value=0.047  Score=57.81  Aligned_cols=37  Identities=30%  Similarity=0.351  Sum_probs=33.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      .++|.|||.|.+|.++|..|.+.|++|+++|++++.+
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~   39 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL   39 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            4689999999999999999999999999999887643

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.18  E-value=0.0068  Score=63.68  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=35.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|||+|-||..++..|+..|. ++++++|+.++.+...
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La  222 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKIT  222 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            589999999999999999999996 7999999988765543

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.17  E-value=0.013  Score=59.32  Aligned_cols=93  Identities=19%  Similarity=0.258  Sum_probs=53.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALIL-SNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~-~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      ++++|||+|..+..-+..++. .++ +|.+|+|++++.++..+++++ +      +           -.+...++. +++
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~------~-----------~~v~~~~~~~~av  190 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L------G-----------VPVVAVDSAEEAV  190 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C------C-----------TCEEEESSHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c------c-----------ccceeccchhhhc
Confidence            479999999999998887764 344 899999999998776654322 1      1           123334455 568


Q ss_pred             cCCCEEEEeccCCh--HHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          225 KDVDMVIEAIIENV--SLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       225 ~~aDlVI~avpe~~--~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      ++||+|+.|.+...  .+    +.  .+.+++++.|.+..|.
T Consensus       191 ~~aDii~taT~s~~~~P~----~~--~~~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  191 RGADIIVTATPSTTPAPV----FD--AEWLKPGTHINAIGSY  226 (313)
T ss_dssp             TTSSEEEE----SSEEES----B---GGGS-TT-EEEE-S-S
T ss_pred             ccCCEEEEccCCCCCCcc----cc--HHHcCCCcEEEEecCC
Confidence            99999999997654  22    11  2356788877655553

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.15  E-value=0.025  Score=45.46  Aligned_cols=32  Identities=38%  Similarity=0.493  Sum_probs=28.6

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CCcEEEEeC
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NYPVILKEV  178 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~~V~l~d~  178 (535)
                      -++++|+|.|.+|.+++..+... +.+|++||+
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46899999999999999999998 568889886

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.13  E-value=0.0092  Score=62.44  Aligned_cols=38  Identities=29%  Similarity=0.395  Sum_probs=32.2

Q ss_pred             EEEEeCChhhHHHHHHHHhCC-C-cEEEEeCCHHHHHHHH
Q 009395          150 VAILGGGLMGSGIATALILSN-Y-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G-~-~V~l~d~~~~~~~~~~  187 (535)
                      |.|+|+|.+|+.++..|++.+ + +|++.|++.+++++..
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~   40 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLA   40 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHH
Confidence            789999999999999999987 4 8999999999987654

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.09  E-value=0.033  Score=57.06  Aligned_cols=95  Identities=12%  Similarity=0.174  Sum_probs=60.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++++|||+|..+...+..++.- . .+|.+|++++++.+...++++.       .+.           .+...++. +.
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~~-----------~v~~~~~~~~a  190 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PGL-----------RIVACRSVAEA  190 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cCC-----------cEEEeCCHHHH
Confidence            45799999999998887655532 3 3899999999998776554321       110           12233444 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +++||+|+.|.+....  ..+|.  .+.+++++.|....|
T Consensus       191 v~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV~aIGs  226 (346)
T PRK07589        191 VEGADIITTVTADKTN--ATILT--DDMVEPGMHINAVGG  226 (346)
T ss_pred             HhcCCEEEEecCCCCC--Cceec--HHHcCCCcEEEecCC
Confidence            8999999999974320  01111  134578876655444

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=96.04  E-value=0.027  Score=60.41  Aligned_cols=41  Identities=20%  Similarity=0.103  Sum_probs=36.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      -.||.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~  204 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ  204 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            47999999999999999999999999999999999876554

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.04  E-value=0.085  Score=44.75  Aligned_cols=91  Identities=21%  Similarity=0.216  Sum_probs=58.2

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c--cc
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--ES  223 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--~~  223 (535)
                      |.|+|.|.+|..++..|.+.+.+|+++|.+++.++.+.+           .|.          .-+... ++   +  ..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-----------~~~----------~~i~gd~~~~~~l~~a~   59 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-----------EGV----------EVIYGDATDPEVLERAG   59 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-----------TTS----------EEEES-TTSHHHHHHTT
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-----------ccc----------ccccccchhhhHHhhcC
Confidence            679999999999999999977799999999999876542           221          011110 11   1  13


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      +.+||.||.+.+++. .-..+...+.+..+.-.+++-..
T Consensus        60 i~~a~~vv~~~~~d~-~n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   60 IEKADAVVILTDDDE-ENLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             GGCESEEEEESSSHH-HHHHHHHHHHHHTTTSEEEEEES
T ss_pred             ccccCEEEEccCCHH-HHHHHHHHHHHHCCCCeEEEEEC
Confidence            678999999987653 33333344554455445555433

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.04  E-value=0.019  Score=63.56  Aligned_cols=98  Identities=16%  Similarity=0.102  Sum_probs=63.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--cccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  225 (535)
                      .+|.|+|.|.+|..+++.|.++|++|+++|.|+++++.+++           .|..      -..+..+-.+-+  ..+.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~~------v~~GDat~~~~L~~agi~  463 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------YGYK------VYYGDATQLELLRAAGAE  463 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------CCCe------EEEeeCCCHHHHHhcCCc
Confidence            57999999999999999999999999999999999876542           1210      000000000011  1367


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +||.||.+++++.. -..+...+.+..++-.|++-..+
T Consensus       464 ~A~~vv~~~~d~~~-n~~i~~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        464 KAEAIVITCNEPED-TMKIVELCQQHFPHLHILARARG  500 (601)
T ss_pred             cCCEEEEEeCCHHH-HHHHHHHHHHHCCCCeEEEEeCC
Confidence            89999999987543 33444455555555556654333

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.03  E-value=0.008  Score=59.06  Aligned_cols=93  Identities=22%  Similarity=0.253  Sum_probs=65.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc--cc--cCc-
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT--GV--LDY-  221 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~--~~--~~~-  221 (535)
                      -.||+|||.|..|..-|+...--|-+|++.|+|.+++...-.    .+     .            .++.  .+  .++ 
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd----~f-----~------------~rv~~~~st~~~ie  226 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD----LF-----G------------GRVHTLYSTPSNIE  226 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH----hh-----C------------ceeEEEEcCHHHHH
Confidence            458999999999999999888889999999999998765321    00     0            1211  11  233 


Q ss_pred             ccccCCCEEEEec--cCChHHHHHHHHHHHhhcCCCceeeec
Q 009395          222 ESFKDVDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASN  261 (535)
Q Consensus       222 ~~~~~aDlVI~av--pe~~~~k~~v~~~l~~~~~~~~ii~s~  261 (535)
                      +.+..+|+||-+|  |- .+.-+-+.++..+.++++.+|++.
T Consensus       227 e~v~~aDlvIgaVLIpg-akaPkLvt~e~vk~MkpGsVivDV  267 (371)
T COG0686         227 EAVKKADLVIGAVLIPG-AKAPKLVTREMVKQMKPGSVIVDV  267 (371)
T ss_pred             HHhhhccEEEEEEEecC-CCCceehhHHHHHhcCCCcEEEEE
Confidence            4578999999987  21 112234567777888999988754

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.00  E-value=0.018  Score=57.26  Aligned_cols=71  Identities=17%  Similarity=0.314  Sum_probs=51.0

Q ss_pred             ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|+|||.|. .|.+++..|.+.|..|+++++....+.                                     +.+++
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~  202 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ  202 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence            5899999997 999999999999999999997433221                                     22478


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      +|+||.|++.. .    .+.  .+.+++++++++..
T Consensus       203 aDIvI~AtG~~-~----~v~--~~~lk~gavViDvg  231 (283)
T PRK14192        203 ADIIVGAVGKP-E----LIK--KDWIKQGAVVVDAG  231 (283)
T ss_pred             CCEEEEccCCC-C----cCC--HHHcCCCCEEEEEE
Confidence            99999999522 1    111  13467787776543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.99  E-value=0.019  Score=63.17  Aligned_cols=95  Identities=18%  Similarity=0.216  Sum_probs=61.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--cccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  225 (535)
                      .+|.|+|+|.+|..+|..|.+.|++|+++|.|+++++.+.+.     ...+-.|-.+..            +.+  ..++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~------------~~L~~a~i~  480 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANE------------EIMQLAHLD  480 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCH------------HHHHhcCcc
Confidence            579999999999999999999999999999999988765421     000001111100            011  1367


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeee
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS  260 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s  260 (535)
                      +||.||.+++++.+.. .+...+.+..+.-.|++-
T Consensus       481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar  514 (558)
T PRK10669        481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIAR  514 (558)
T ss_pred             ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEE
Confidence            9999999998775432 233344444444445543

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.98  E-value=0.024  Score=56.08  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=25.9

Q ss_pred             ceEEEEe-CChhhHHHHHHHHh-CCCcEE-EEeCC
Q 009395          148 KKVAILG-GGLMGSGIATALIL-SNYPVI-LKEVN  179 (535)
Q Consensus       148 ~kV~vIG-~G~mG~~iA~~l~~-~G~~V~-l~d~~  179 (535)
                      .||+|+| +|.||..++..+.. .+++++ ++|++
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~   36 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH   36 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            5899999 59999999999886 477755 57743

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.93  E-value=0.024  Score=60.55  Aligned_cols=40  Identities=28%  Similarity=0.320  Sum_probs=36.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|+|+|.+|..++..|...|++|+++|++++.++.+.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~   40 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQ   40 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence            4799999999999999999999999999999999876543

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.92  E-value=0.017  Score=59.15  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=31.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      .||.|||+|.+|+.+|..|+++|. +++++|.+.
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            579999999999999999999999 899999874

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.91  E-value=0.058  Score=51.50  Aligned_cols=129  Identities=22%  Similarity=0.253  Sum_probs=74.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      ++|.|||+|.++..=+..|++.|.+|+++...  ++- ..           ..+.|.++         .+.-.-..+++.
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el-~~-----------l~~~~~i~---------~~~r~~~~~dl~   84 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEF-LD-----------LKKYGNLK---------LIKGNYDKEFIK   84 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHH-HH-----------HHhCCCEE---------EEeCCCChHHhC
Confidence            48999999999999899999999999999654  332 11           11222221         111011224578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCC--CCCCEEEEEeCCCC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT  303 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~t  303 (535)
                      ++++||.|+. |.++-+.+    ...+....+++.+.....            .   ..|+.|+  ...+++.-+...+.
T Consensus        85 g~~LViaATd-D~~vN~~I----~~~a~~~~~lvn~vd~p~------------~---~dFi~PAiv~rg~l~IaIST~G~  144 (223)
T PRK05562         85 DKHLIVIATD-DEKLNNKI----RKHCDRLYKLYIDCSDYK------------K---GLCIIPYQRSTKNFVFALNTKGG  144 (223)
T ss_pred             CCcEEEECCC-CHHHHHHH----HHHHHHcCCeEEEcCCcc------------c---CeEEeeeEEecCCEEEEEECCCc
Confidence            9999999974 55544443    334444333433332111            0   1244554  33556666666667


Q ss_pred             CHHHHHHHHHHHHh
Q 009395          304 SPQVIVDLLDIGKK  317 (535)
Q Consensus       304 s~e~~~~~~~l~~~  317 (535)
                      +|.....++.-++.
T Consensus       145 sP~lar~lR~~ie~  158 (223)
T PRK05562        145 SPKTSVFIGEKVKN  158 (223)
T ss_pred             CcHHHHHHHHHHHH
Confidence            77666655555443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.77  E-value=0.45  Score=48.29  Aligned_cols=41  Identities=27%  Similarity=0.166  Sum_probs=34.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      =++|+|+|+|-+|..-.+.....|.+|+.+|+++++.+.++
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~  207 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK  207 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH
Confidence            46899999998887666666668999999999999987664

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.76  E-value=0.014  Score=58.08  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=36.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|+|+|-.|++++..|+..|. +|+++||+.++.+...+
T Consensus       128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~  169 (283)
T PRK14027        128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD  169 (283)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence            579999999999999999999997 79999999988766543

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=95.73  E-value=0.034  Score=54.48  Aligned_cols=48  Identities=27%  Similarity=0.290  Sum_probs=41.9

Q ss_pred             CCcceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH
Q 009395          145 RRVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRA  192 (535)
Q Consensus       145 ~~~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~  192 (535)
                      +..+++.|-|+ +-+|..+|..|+++|++|+++.|+.+++++..+++++
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~   52 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED   52 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence            34567888898 9999999999999999999999999999887766554

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.71  E-value=0.02  Score=45.30  Aligned_cols=35  Identities=34%  Similarity=0.597  Sum_probs=32.4

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      ||+|||+|..|.-+|..+...|.+|+++++++.-.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            68999999999999999999999999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06153 hypothetical protein; Provisional

Probab=95.66  E-value=0.023  Score=58.30  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=29.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~  179 (535)
                      .+|+|||+|-.|+.++..|++.|. +++++|-+
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            489999999999999999999998 89999976

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.64  E-value=0.027  Score=49.98  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=29.5

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      ||.|||+|.+|+.++..|++.|+ +++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 799999873

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=95.62  E-value=0.013  Score=61.07  Aligned_cols=40  Identities=25%  Similarity=0.435  Sum_probs=34.1

Q ss_pred             ceEEEEeCChhhHHH-HHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGI-ATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~i-A~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      +||+++|+|.||++. ...+.+.|++|+++|++++.++...
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~   41 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALN   41 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHh
Confidence            479999999999855 7788889999999999888766554

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=95.60  E-value=0.058  Score=46.14  Aligned_cols=73  Identities=14%  Similarity=0.192  Sum_probs=49.8

Q ss_pred             ceEEEEe----CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILG----GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG----~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ++|+|||    -+.+|.-+...+.++|++|+.++.....+.                             .+....++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----------------------------G~~~y~sl~e   51 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----------------------------GIKCYPSLAE   51 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----------------------------TEE-BSSGGG
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----------------------------cEEeeccccC
Confidence            5799999    588999999999999999999987654321                             1223445554


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHhh
Q 009395          224 F-KDVDMVIEAIIENVSLKQQIFADLEKY  251 (535)
Q Consensus       224 ~-~~aDlVI~avpe~~~~k~~v~~~l~~~  251 (535)
                      . ...|+++.++|  ++..-++++++.+.
T Consensus        52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~   78 (116)
T PF13380_consen   52 IPEPIDLAVVCVP--PDKVPEIVDEAAAL   78 (116)
T ss_dssp             CSST-SEEEE-S---HHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcC--HHHHHHHHHHHHHc
Confidence            4 68999999997  44556777777665

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.58  E-value=0.03  Score=56.10  Aligned_cols=34  Identities=18%  Similarity=0.386  Sum_probs=31.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~  181 (535)
                      +++.|+|+|-+|.+++..|+..|.. |++++|+.+
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~  161 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD  161 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence            5789999999999999999999996 999999973

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.49  E-value=0.16  Score=54.65  Aligned_cols=38  Identities=29%  Similarity=0.402  Sum_probs=33.8

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      -..+||.|+|+|..|.++|..|.+.|++|+++|++...
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~   50 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA   50 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            34578999999999999999999999999999987654

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.45  E-value=0.016  Score=60.98  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=31.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      |.+|+|||+|.+|.++|..|++.|++|+++|+..
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3589999999999999999999999999999875

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.45  E-value=0.049  Score=54.47  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~  181 (535)
                      +++.|||+|-.+++|+..++..|. +|++++|+++
T Consensus       125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            579999999999999999999997 8999999964

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.41  E-value=0.045  Score=56.93  Aligned_cols=75  Identities=23%  Similarity=0.229  Sum_probs=52.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC--CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009395          147 VKKVAILGGGLMGSGIATALILS--NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~--G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (535)
                      .++++|||+|.++......++.-  .+ +|.+|++++++.+...+++...+.     |.          ..+...++. +
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e  219 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE  219 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence            46899999999999999888762  34 899999999998876544332110     10          013333444 4


Q ss_pred             cccCCCEEEEeccC
Q 009395          223 SFKDVDMVIEAIIE  236 (535)
Q Consensus       223 ~~~~aDlVI~avpe  236 (535)
                      ++++||+|+.|.+.
T Consensus       220 av~~ADIVvtaT~s  233 (379)
T PRK06199        220 VVRGSDIVTYCNSG  233 (379)
T ss_pred             HHcCCCEEEEccCC
Confidence            58899999988853

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=95.41  E-value=0.059  Score=55.29  Aligned_cols=106  Identities=13%  Similarity=0.068  Sum_probs=55.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh-hcccccccCccc-
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT-ISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~~-  223 (535)
                      .||+|+|+|.||..++..+... +++|+. .|.+++.......+.  .++.   .+... ...... -..+....+++. 
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~~-~~~~~~~~~~i~V~~~~~el   75 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVADP-EREKAFEEAGIPVAGTIEDL   75 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccCc-cccccccCCceEEcCChhHh
Confidence            5899999999999999988754 567664 566654433222110  0000   00000 000000 011223333433 


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      +.++|+||+|.|....  .+...   .++..++.++++++.
T Consensus        76 ~~~vDVVIdaT~~~~~--~e~a~---~~~~aGk~VI~~~~~  111 (341)
T PRK04207         76 LEKADIVVDATPGGVG--AKNKE---LYEKAGVKAIFQGGE  111 (341)
T ss_pred             hccCCEEEECCCchhh--HHHHH---HHHHCCCEEEEcCCC
Confidence            4689999999986533  23333   334455666666663

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.40  E-value=0.053  Score=60.31  Aligned_cols=91  Identities=19%  Similarity=0.215  Sum_probs=61.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc----
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY----  221 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~----  221 (535)
                      -.+|.|+|.|.+|..+++.|.++|++++++|.|+++++.+++           .|.          .-+... ++.    
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------~g~----------~v~~GDat~~~~L~  458 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-----------FGM----------KVFYGDATRMDLLE  458 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------cCC----------eEEEEeCCCHHHHH
Confidence            368999999999999999999999999999999999876642           121          001010 111    


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 009395          222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       222 -~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                       ..+.++|+||.++.++.. -..+...+.+..++-.|++
T Consensus       459 ~agi~~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        459 SAGAAKAEVLINAIDDPQT-SLQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             hcCCCcCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEE
Confidence             236789999999975433 3334444555444444554

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.40  E-value=0.054  Score=53.65  Aligned_cols=40  Identities=30%  Similarity=0.225  Sum_probs=35.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|+|+|-.+++++..|+..|. +|++++|++++.+...
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la  163 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA  163 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            479999999999999999999997 5999999998776543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.36  E-value=0.11  Score=55.62  Aligned_cols=41  Identities=37%  Similarity=0.421  Sum_probs=37.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      .++|.|+|+|.+|..++..|.+.|++|+++|.+++.++...
T Consensus       231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~  271 (453)
T PRK09496        231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELA  271 (453)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            57899999999999999999999999999999999876543

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.24  E-value=0.05  Score=56.43  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=30.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~  179 (535)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus        42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            479999999999999999999997 89999987

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.23  E-value=0.2  Score=54.14  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=32.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      ++|.|+|+|..|.+.+..|...|++|+++|.+++..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~   48 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL   48 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence            689999999999999999999999999999876543

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.22  E-value=0.044  Score=54.30  Aligned_cols=71  Identities=14%  Similarity=0.266  Sum_probs=53.0

Q ss_pred             ceEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          148 KKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      ++|+|||.|.. |.++|..|.+.|..|+++....                                      .++ +.++
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------------------------------~~l~~~~~  200 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------------------------------RDLAAHTR  200 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------------------------------CCHHHHhh
Confidence            68999999877 9999999999999999876422                                      122 3368


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +||+||.+++-. .    ++..  ..+++++++++...
T Consensus       201 ~ADIVV~avG~~-~----~i~~--~~ik~gavVIDVGi  231 (285)
T PRK14189        201 QADIVVAAVGKR-N----VLTA--DMVKPGATVIDVGM  231 (285)
T ss_pred             hCCEEEEcCCCc-C----ccCH--HHcCCCCEEEEccc
Confidence            999999999732 2    2322  56889998876543

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.17  E-value=0.25  Score=50.78  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC
Q 009395          148 KKVAILGGGLMGSGIATALILS  169 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~  169 (535)
                      .+|+|+|+|.||+.++..+.++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            4799999999999999988765

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.16  E-value=0.037  Score=53.44  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      .||.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999999999999999998 888998763

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.15  E-value=0.64  Score=46.15  Aligned_cols=85  Identities=22%  Similarity=0.276  Sum_probs=56.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHh-hhcccccccCcc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGK---MTQEKFEK-TISLLTGVLDYE  222 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~---~~~~~~~~-~~~~i~~~~~~~  222 (535)
                      ..|+|.|+|.+|.+.+.....+|. .++.+|+|+++.+.+.+           .|.   +.+.+... ..+.|.--++  
T Consensus       194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~-----------fGaTe~iNp~d~~~~i~evi~EmTd--  260 (375)
T KOG0022|consen  194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE-----------FGATEFINPKDLKKPIQEVIIEMTD--  260 (375)
T ss_pred             CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh-----------cCcceecChhhccccHHHHHHHHhc--
Confidence            579999999999999999999996 89999999999887652           232   11111111 1111111111  


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHH
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADL  248 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l  248 (535)
                        .+.|+-+||+- +.+++++-|...
T Consensus       261 --gGvDysfEc~G-~~~~m~~al~s~  283 (375)
T KOG0022|consen  261 --GGVDYSFECIG-NVSTMRAALESC  283 (375)
T ss_pred             --CCceEEEEecC-CHHHHHHHHHHh
Confidence              57899999995 455555555443

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.15  E-value=0.018  Score=59.44  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=30.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      .||.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            589999999999999999999998 799999874

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.13  E-value=0.13  Score=55.51  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      +.++|.|||+|..|.++|..|.+.|++|+++|.++.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            346899999999999999999999999999997653

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.13  E-value=0.066  Score=51.64  Aligned_cols=33  Identities=33%  Similarity=0.342  Sum_probs=30.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      .+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            479999999999999999999998 899999764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.045  Score=52.49  Aligned_cols=38  Identities=34%  Similarity=0.308  Sum_probs=33.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~  185 (535)
                      ++|.|+|+ |.+|..++..+++.|++|++.+++++....
T Consensus         8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~   46 (239)
T PRK12828          8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ   46 (239)
T ss_pred             CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence            57999987 999999999999999999999999876544

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=94.99  E-value=0.28  Score=46.60  Aligned_cols=130  Identities=25%  Similarity=0.272  Sum_probs=79.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|.|||+|..|..=+..|++.|.+|+++..+. +.+...           .+.+.+..         +.-.-+.+.+.+
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~-----------~~~~~i~~---------~~~~~~~~~~~~   72 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKAL-----------IEEGKIKW---------IEREFDAEDLDD   72 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHH-----------HHhcCcch---------hhcccChhhhcC
Confidence            589999999999999999999999999998765 222221           22222211         111123345677


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC--CCCEEEEEeCCCCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTS  304 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~ts  304 (535)
                      +++||.|+. |.++-+.+++...+    ..+++ |...           .|..   ..|+.|..  ..++..-+...+.+
T Consensus        73 ~~lviaAt~-d~~ln~~i~~~a~~----~~i~v-Nv~D-----------~p~~---~~f~~Pa~~~r~~l~iaIsT~G~s  132 (210)
T COG1648          73 AFLVIAATD-DEELNERIAKAARE----RRILV-NVVD-----------DPEL---CDFIFPAIVDRGPLQIAISTGGKS  132 (210)
T ss_pred             ceEEEEeCC-CHHHHHHHHHHHHH----hCCce-eccC-----------Cccc---CceecceeeccCCeEEEEECCCCC
Confidence            999999986 55666666554433    33443 2221           1211   34555643  35666666776777


Q ss_pred             HHHHHHHHHHHHh
Q 009395          305 PQVIVDLLDIGKK  317 (535)
Q Consensus       305 ~e~~~~~~~l~~~  317 (535)
                      |.....+++-+..
T Consensus       133 P~la~~ir~~Ie~  145 (210)
T COG1648         133 PVLARLLREKIEA  145 (210)
T ss_pred             hHHHHHHHHHHHH
Confidence            7776666665554

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.95  E-value=0.084  Score=46.69  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=53.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|.|+|- ...|..++..|.+.|..|++++.+...++                                     +.+++
T Consensus        29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~   71 (140)
T cd05212          29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD   71 (140)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence            58999998 56799999999999999999986432221                                     23678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ||+||.++....-++.       +.+++++++++...
T Consensus        72 ADIVvsAtg~~~~i~~-------~~ikpGa~Vidvg~  101 (140)
T cd05212          72 ADVVVVGSPKPEKVPT-------EWIKPGATVINCSP  101 (140)
T ss_pred             CCEEEEecCCCCccCH-------HHcCCCCEEEEcCC
Confidence            9999999975533333       34778998875443

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=94.89  E-value=0.093  Score=51.56  Aligned_cols=109  Identities=20%  Similarity=0.288  Sum_probs=64.7

Q ss_pred             HHhhcccCCCCCCCCCCCCCCCCcceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC
Q 009395          124 IFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGK  202 (535)
Q Consensus       124 aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~  202 (535)
                      +|+......|..+           +-|.|||+|-+|+-.+..|++.|. ++.++|.++-.+.....+.-   .....-|.
T Consensus        62 aFfGee~m~kl~~-----------syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~---Atl~DVG~  127 (430)
T KOG2018|consen   62 AFFGEEGMEKLTN-----------SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSC---ATLADVGT  127 (430)
T ss_pred             hhhhhhHHHHhcC-----------cEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhh---hhHhhcCC
Confidence            5666665555422           358999999999999999999998 68888988766655443210   11111111


Q ss_pred             CCHHHHHhhhccccc-----------c-cCccc--ccCCCEEEEeccCChHHHHHHHHH
Q 009395          203 MTQEKFEKTISLLTG-----------V-LDYES--FKDVDMVIEAIIENVSLKQQIFAD  247 (535)
Q Consensus       203 ~~~~~~~~~~~~i~~-----------~-~~~~~--~~~aDlVI~avpe~~~~k~~v~~~  247 (535)
                      -......+++..|.+           + .+-++  ..+-|+|++|+ ++.+.|.++++-
T Consensus       128 PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDci-DNidtKVdLL~y  185 (430)
T KOG2018|consen  128 PKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCI-DNIDTKVDLLEY  185 (430)
T ss_pred             chHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhh-hhhhhhhHHHHH
Confidence            101111111121111           1 12233  46789999999 478888887763

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.89  E-value=0.062  Score=44.87  Aligned_cols=72  Identities=28%  Similarity=0.450  Sum_probs=48.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|.|||+|.+|..=+..|++.|.+|+++..+.+..+                +.++          +. ...+ +++.+
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----------------~~i~----------~~-~~~~~~~l~~   60 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----------------GLIQ----------LI-RREFEEDLDG   60 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----------------TSCE----------EE-ESS-GGGCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----------------hHHH----------HH-hhhHHHHHhh
Confidence            6899999999999999999999999999998851111                1110          00 1111 45888


Q ss_pred             CCEEEEeccCChHHHHHHHHH
Q 009395          227 VDMVIEAIIENVSLKQQIFAD  247 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~  247 (535)
                      +|+||.|.. +..+.+.+.+.
T Consensus        61 ~~lV~~at~-d~~~n~~i~~~   80 (103)
T PF13241_consen   61 ADLVFAATD-DPELNEAIYAD   80 (103)
T ss_dssp             ESEEEE-SS--HHHHHHHHHH
T ss_pred             heEEEecCC-CHHHHHHHHHH
Confidence            999997764 55555555443

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.89  E-value=0.14  Score=51.25  Aligned_cols=96  Identities=20%  Similarity=0.235  Sum_probs=54.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcccccccCcccc
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~~  224 (535)
                      .||+|||+|.+|..+...+.+. ++++. ++|++++.......         .+.|.-. ....+..+.       ..++
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~   68 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF   68 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence            5799999999999977777654 56655 78998864321110         0122110 001111110       0124


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      .+.|+|+++.|....  .+...   .....++.++++++.
T Consensus        69 ~dIDiVf~AT~a~~H--~e~a~---~a~eaGk~VID~sPA  103 (302)
T PRK08300         69 DDIDIVFDATSAGAH--VRHAA---KLREAGIRAIDLTPA  103 (302)
T ss_pred             CCCCEEEECCCHHHH--HHHHH---HHHHcCCeEEECCcc
Confidence            679999999985432  23222   234567777777764

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.86  E-value=0.054  Score=56.47  Aligned_cols=32  Identities=22%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~  179 (535)
                      ++|.|||+|..|+.++..|++.|. +++++|.+
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            579999999999999999999998 79999987

>PRK12829 short chain dehydrogenase; Provisional

Probab=94.84  E-value=0.13  Score=50.19  Aligned_cols=39  Identities=31%  Similarity=0.361  Sum_probs=34.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|+|+ |.+|..++..|+.+|++|++.+++++..+..
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~   51 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT   51 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            68999987 9999999999999999999999998766543

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.83  E-value=0.071  Score=54.80  Aligned_cols=99  Identities=15%  Similarity=0.152  Sum_probs=56.6

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc--
Q 009395          147 VKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--  222 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--  222 (535)
                      +.||+|||+ |.+|..++..+.+. +++++.+-.+.+.-+...+    .+      +.+.     .. .... ..+++  
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~----~~------~~~~-----~~-~~~~-~~~~~~~   64 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSD----VH------PHLR-----GL-VDLV-LEPLDPE   64 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHH----hC------cccc-----cc-cCce-eecCCHH
Confidence            469999997 99999999999877 6776554333222111110    00      0000     00 0000 11121  


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      ...++|+|+.|+|....  .++..++   ...++.++++++...+
T Consensus        65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~  104 (343)
T PRK00436         65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRL  104 (343)
T ss_pred             HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCC
Confidence            34679999999997532  3443333   2457888899987755

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.81  E-value=0.078  Score=52.48  Aligned_cols=71  Identities=17%  Similarity=0.207  Sum_probs=51.8

Q ss_pred             ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|+|||.| ..|.++|..|.++|..|++++.....+.                                     +.+++
T Consensus       158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~  200 (285)
T PRK14191        158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN  200 (285)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence            689999998 8999999999999999999864332221                                     23578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ||+||.|+.-.--+.       .+++++++++++..
T Consensus       201 ADIvV~AvG~p~~i~-------~~~vk~GavVIDvG  229 (285)
T PRK14191        201 ADIVCVGVGKPDLIK-------ASMVKKGAVVVDIG  229 (285)
T ss_pred             CCEEEEecCCCCcCC-------HHHcCCCcEEEEee
Confidence            999999995322122       23467888887644

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.77  E-value=0.064  Score=52.14  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=31.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~  182 (535)
                      .||.|+|+|.+|+.+|..|++.|. +++++|.+.-.
T Consensus        25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS   60 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            589999999999999999999997 79999987543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.76  E-value=0.079  Score=51.20  Aligned_cols=32  Identities=22%  Similarity=0.493  Sum_probs=29.2

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      ||.|||+|..|+.++..|+..|+ +++++|.+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999998 789999863

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.64  E-value=0.059  Score=48.74  Aligned_cols=74  Identities=22%  Similarity=0.328  Sum_probs=47.8

Q ss_pred             ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|.|||-+ ..|.+++..|.++|..|++++.....++                                     +.+++
T Consensus        37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~   79 (160)
T PF02882_consen   37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR   79 (160)
T ss_dssp             -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence            689999996 5899999999999999999886543221                                     23578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  265 (535)
                      ||+||.++...--++       .+.+++++++++.....
T Consensus        80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~~  111 (160)
T PF02882_consen   80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGINY  111 (160)
T ss_dssp             SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CEE
T ss_pred             ccEEeeeeccccccc-------cccccCCcEEEecCCcc
Confidence            999999996432222       23578899888665543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.62  E-value=0.064  Score=52.83  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=30.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~  181 (535)
                      .+|.|+|+|.+|+.+|..|++.|. +++++|.+.-
T Consensus        31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            479999999999999999999995 8999998743

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=94.58  E-value=0.45  Score=43.98  Aligned_cols=40  Identities=30%  Similarity=0.364  Sum_probs=31.7

Q ss_pred             ceEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      .|++++ |+ --+|.+|+..|+++|+.|.+.|++.+..+...
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata   55 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATA   55 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHH
Confidence            455555 55 46899999999999999999999988665543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.58  E-value=0.081  Score=51.64  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=30.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      .||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            589999999999999999999997 799998763

>CHL00194 ycf39 Ycf39; Provisional

Probab=94.56  E-value=0.079  Score=53.76  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      +||.|+|+ |.+|+.++..|+++|++|++.+|+.+..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~   37 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA   37 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence            47999996 9999999999999999999999987643

>PRK07326 short chain dehydrogenase; Provisional

Probab=94.54  E-value=0.082  Score=50.79  Aligned_cols=39  Identities=36%  Similarity=0.467  Sum_probs=34.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|+|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~   46 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA   46 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence            57889986 9999999999999999999999998776544

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=94.52  E-value=0.018  Score=57.17  Aligned_cols=31  Identities=23%  Similarity=0.413  Sum_probs=28.5

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395          149 KVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~  179 (535)
                      ||.|||+|..|+.+|+.|+..|. +++++|.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            68999999999999999999998 78888865

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PLN03075 nicotianamine synthase; Provisional

Probab=94.49  E-value=0.18  Score=50.22  Aligned_cols=102  Identities=18%  Similarity=0.141  Sum_probs=65.8

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc-
Q 009395          146 RVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY-  221 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-  221 (535)
                      +.++|+.||+|..|-.-...++..  +-.++.+|++++.++.+++.+..      ..| +        ..++++. .|. 
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g-L--------~~rV~F~~~Da~  187 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD-L--------SKRMFFHTADVM  187 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC-c--------cCCcEEEECchh
Confidence            347899999998876544333333  34699999999999887654321      011 1        0123221 111 


Q ss_pred             ---ccccCCCEEEEeccC--ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          222 ---ESFKDVDMVIEAIIE--NVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       222 ---~~~~~aDlVI~avpe--~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                         ....+.|+|+..+--  +..-|.++++.+.+.++++.+++.-+
T Consensus       188 ~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        188 DVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             hcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence               135689999988621  22467899999999999999776555

>PRK08328 hypothetical protein; Provisional

Probab=94.42  E-value=0.047  Score=52.82  Aligned_cols=35  Identities=29%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~  182 (535)
                      .+|.|||+|..|+.++..|++.|. +++++|.+.-.
T Consensus        28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve   63 (231)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE   63 (231)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence            479999999999999999999998 79999977544

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=94.38  E-value=0.095  Score=50.87  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=28.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC-----------CcEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSN-----------YPVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G-----------~~V~l~d~~~  180 (535)
                      .||.|||+|..|+.++..|++.|           .+++++|.+.
T Consensus        12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            58999999999999999999874           3899999763

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK08223 hypothetical protein; Validated

Probab=94.34  E-value=0.045  Score=54.27  Aligned_cols=33  Identities=21%  Similarity=0.192  Sum_probs=30.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      .+|.|||+|-+|+.++..|+++|. +++++|-+.
T Consensus        28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV   61 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999998 799999874

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.33  E-value=0.25  Score=53.70  Aligned_cols=41  Identities=17%  Similarity=0.171  Sum_probs=35.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      +.|.|.|+ |.+|..++..|++.|++|++++|+.+.++...+
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~  122 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQ  122 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            46888887 999999999999999999999999988765443

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=94.31  E-value=0.048  Score=57.48  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ++|+|||+|.+|.++|..|+++|++|+++|++..
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            3799999999999999999999999999999753

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=94.31  E-value=0.11  Score=50.76  Aligned_cols=41  Identities=22%  Similarity=0.290  Sum_probs=35.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   42 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALK   42 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            36888887 889999999999999999999999887765543

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=94.23  E-value=0.12  Score=53.71  Aligned_cols=101  Identities=17%  Similarity=0.263  Sum_probs=60.1

Q ss_pred             CcceEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          146 RVKKVAILGG-GLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       146 ~~~kV~vIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ..+||+|+|+ |..|..+.+.|..+ +++|+.+..+...-+...    ..... +..+..         ..+. ..+.+.
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~----~~~~~-l~~~~~---------~~~~-~~~~~~  101 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG----SVFPH-LITQDL---------PNLV-AVKDAD  101 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch----hhCcc-ccCccc---------ccee-cCCHHH
Confidence            4569999999 99999999999988 679999877543311110    00000 000000         0000 011223


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      ++++|+||.|+|..  .-.++...    +..++.++++++..-.
T Consensus       102 ~~~~DvVf~Alp~~--~s~~i~~~----~~~g~~VIDlSs~fRl  139 (381)
T PLN02968        102 FSDVDAVFCCLPHG--TTQEIIKA----LPKDLKIVDLSADFRL  139 (381)
T ss_pred             hcCCCEEEEcCCHH--HHHHHHHH----HhCCCEEEEcCchhcc
Confidence            68899999999864  33344444    3456888888886543

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.16  E-value=0.68  Score=49.41  Aligned_cols=34  Identities=35%  Similarity=0.435  Sum_probs=31.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      -++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3689999999999999999999999999999985

>PRK07454 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.12  Score=49.89  Aligned_cols=40  Identities=23%  Similarity=0.274  Sum_probs=34.7

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++++.|.|+ |.+|..++..|+++|++|++.+++++..+..
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   46 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEAL   46 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            567888886 9999999999999999999999998765443

>PRK06196 oxidoreductase; Provisional

Probab=94.15  E-value=0.14  Score=51.96  Aligned_cols=42  Identities=19%  Similarity=0.249  Sum_probs=35.8

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+|+++..+...+.
T Consensus        27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~   69 (315)
T PRK06196         27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAG   69 (315)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            56888887 8999999999999999999999998877655433

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=94.13  E-value=0.18  Score=48.60  Aligned_cols=32  Identities=31%  Similarity=0.294  Sum_probs=29.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEE-EEeC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVI-LKEV  178 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~-l~d~  178 (535)
                      -++|+|.|.|.+|..+|..|...|..|+ +.|.
T Consensus        31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3689999999999999999999999988 7777

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.12  E-value=0.15  Score=50.42  Aligned_cols=73  Identities=14%  Similarity=0.232  Sum_probs=54.3

Q ss_pred             ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|.|||-+ ..|.++|..+...|..|+.+..+...+.                                     +.+++
T Consensus       153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~  195 (279)
T PRK14178        153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ  195 (279)
T ss_pred             CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence            589999998 8899999999999999999987654332                                     23578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      ||+||.|++-..-+..       ..+++++++++....
T Consensus       196 ADIvI~Avgk~~lv~~-------~~vk~GavVIDVgi~  226 (279)
T PRK14178        196 ADILVSAAGKAGFITP-------DMVKPGATVIDVGIN  226 (279)
T ss_pred             CCEEEECCCcccccCH-------HHcCCCcEEEEeecc
Confidence            9999999963211222       236899988765543

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.11  E-value=0.1  Score=51.65  Aligned_cols=71  Identities=15%  Similarity=0.260  Sum_probs=52.1

Q ss_pred             ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|+|||-|. .|.++|..|.+.|..|++++.....+.                                     +.+++
T Consensus       160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~  202 (285)
T PRK10792        160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN  202 (285)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence            6899999987 899999999999999999875422111                                     23678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ||+||.++.-.--+..       +++++++++++..
T Consensus       203 ADIvi~avG~p~~v~~-------~~vk~gavVIDvG  231 (285)
T PRK10792        203 ADLLVVAVGKPGFIPG-------EWIKPGAIVIDVG  231 (285)
T ss_pred             CCEEEEcCCCcccccH-------HHcCCCcEEEEcc
Confidence            9999999942111211       5678899887644

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.11  E-value=0.29  Score=49.97  Aligned_cols=72  Identities=22%  Similarity=0.207  Sum_probs=48.1

Q ss_pred             CcceEEEEeCChhh-HHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          146 RVKKVAILGGGLMG-SGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       146 ~~~kV~vIG~G~mG-~~iA~~l~~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      ++.||+|||+|.++ ...+..+...+.   -|.++|+++++++...+.          .|.            -...+++
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~----------~~~------------~~~~~~~   59 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEE----------FGI------------AKAYTDL   59 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHH----------cCC------------CcccCCH
Confidence            35789999998555 557777777663   466889999987655421          111            0234455


Q ss_pred             cc-c--cCCCEEEEeccCChH
Q 009395          222 ES-F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       222 ~~-~--~~aDlVI~avpe~~~  239 (535)
                      ++ +  .+.|+|+.|+|.+..
T Consensus        60 ~~ll~~~~iD~V~Iatp~~~H   80 (342)
T COG0673          60 EELLADPDIDAVYIATPNALH   80 (342)
T ss_pred             HHHhcCCCCCEEEEcCCChhh
Confidence            54 3  347999999997765

>PRK07062 short chain dehydrogenase; Provisional

Probab=94.11  E-value=0.13  Score=50.53  Aligned_cols=41  Identities=17%  Similarity=0.234  Sum_probs=34.7

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      +.+.|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus         9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   50 (265)
T PRK07062          9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEA   50 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            45777777 789999999999999999999999887765543

>PRK08267 short chain dehydrogenase; Provisional

Probab=94.11  E-value=0.088  Score=51.49  Aligned_cols=40  Identities=25%  Similarity=0.245  Sum_probs=34.9

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      +++|.|+|+ |.+|..++..|++.|++|++++++++.++..
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   41 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAAL   41 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            357889986 9999999999999999999999998876554

>PRK05868 hypothetical protein; Validated

Probab=94.10  E-value=0.049  Score=56.68  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=32.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      |++|.|||+|..|...|..|+++|++|+++|+.++.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            468999999999999999999999999999987653

>PRK07825 short chain dehydrogenase; Provisional

Probab=94.10  E-value=0.15  Score=50.34  Aligned_cols=40  Identities=30%  Similarity=0.341  Sum_probs=35.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..++..|+++|++|++.+++++.++...
T Consensus         6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~   46 (273)
T PRK07825          6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA   46 (273)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            57888887 99999999999999999999999998876543

>PRK07774 short chain dehydrogenase; Provisional

Probab=94.10  E-value=0.12  Score=50.10  Aligned_cols=39  Identities=26%  Similarity=0.322  Sum_probs=34.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++..+..
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~   46 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV   46 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57889987 9999999999999999999999998765443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.06  E-value=0.46  Score=48.97  Aligned_cols=39  Identities=23%  Similarity=0.230  Sum_probs=34.6

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      +|+|+|+|.||...+..+...|. +|++.|+++++++.+.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~  210 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAK  210 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH
Confidence            79999999999998888888885 7888899999998775

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.06  E-value=0.14  Score=50.26  Aligned_cols=43  Identities=21%  Similarity=0.279  Sum_probs=36.3

Q ss_pred             cceEEEEeC-C-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          147 VKKVAILGG-G-LMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       147 ~~kV~vIG~-G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      -+++.|.|+ | .+|.+++..|+..|++|++.+++++.++...+.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~   61 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADE   61 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence            467999997 6 599999999999999999999998877665443

>PRK05866 short chain dehydrogenase; Provisional

Probab=94.03  E-value=0.13  Score=51.52  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=35.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...
T Consensus        41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~   81 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA   81 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            57888887 99999999999999999999999988776544

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.01  E-value=0.17  Score=48.39  Aligned_cols=34  Identities=24%  Similarity=0.243  Sum_probs=30.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      -++|+|.|.|++|+.+|..|.+.|. .|.+.|.+.
T Consensus        23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            3689999999999999999999988 566788876

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK07877 hypothetical protein; Provisional

Probab=94.00  E-value=0.075  Score=59.54  Aligned_cols=32  Identities=19%  Similarity=0.386  Sum_probs=28.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~  180 (535)
                      .||+|||+| +|+.+|..|++.|.  +++++|.+.
T Consensus       108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~  141 (722)
T PRK07877        108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT  141 (722)
T ss_pred             CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence            579999999 89999999999995  899999863

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.99  E-value=0.066  Score=54.61  Aligned_cols=31  Identities=32%  Similarity=0.404  Sum_probs=29.8

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      .|+|||+|..|.++|..|++.|++|+++|++
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            4899999999999999999999999999998

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=93.98  E-value=0.32  Score=46.51  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=31.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLE  184 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~  184 (535)
                      .+|+|+|.|-+|+-.+..|++.|+ +++++|.+.=.+.
T Consensus        31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vT   68 (263)
T COG1179          31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVT   68 (263)
T ss_pred             CcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccc
Confidence            579999999999999999999998 7899988754433

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=93.93  E-value=0.13  Score=52.91  Aligned_cols=99  Identities=21%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCccc
Q 009395          148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYES  223 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~  223 (535)
                      +||+|||+ |.+|..+++.|.+. +++++ +++.+...-+...    ..+      +.+..     . ..+... .+.++
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~----~~~------~~l~~-----~-~~~~~~~~~~~~   64 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVS----EVH------PHLRG-----L-VDLNLEPIDEEE   64 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChH----HhC------ccccc-----c-CCceeecCCHHH
Confidence            47999998 99999999999877 66877 5565542211111    000      10000     0 000111 12223


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       224 ~-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      + .++|+||.|+|....  .++..++.   ..++.++++++..-+
T Consensus        65 ~~~~~DvVf~alP~~~s--~~~~~~~~---~~G~~VIDlS~~fR~  104 (346)
T TIGR01850        65 IAEDADVVFLALPHGVS--AELAPELL---AAGVKVIDLSADFRL  104 (346)
T ss_pred             hhcCCCEEEECCCchHH--HHHHHHHH---hCCCEEEeCChhhhc
Confidence            3 589999999996532  34444432   457888888886544

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK07890 short chain dehydrogenase; Provisional

Probab=93.92  E-value=0.11  Score=50.64  Aligned_cols=40  Identities=20%  Similarity=0.165  Sum_probs=34.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++..+...
T Consensus         6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~   46 (258)
T PRK07890          6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA   46 (258)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            56888886 89999999999999999999999987765543

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=93.91  E-value=0.029  Score=61.13  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=29.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~  179 (535)
                      .||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus       339 ~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       339 LKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            589999999999999999999998 78999875

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK06194 hypothetical protein; Provisional

Probab=93.89  E-value=0.15  Score=50.68  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=34.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..++..|++.|++|+++|++.+.++...
T Consensus         7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~   47 (287)
T PRK06194          7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAV   47 (287)
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            57888876 89999999999999999999999987765543

>PRK06057 short chain dehydrogenase; Provisional

Probab=93.87  E-value=0.12  Score=50.39  Aligned_cols=40  Identities=20%  Similarity=0.269  Sum_probs=34.9

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      -++|.|+|+ |.+|..++..+++.|++|++.++++...+..
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~   47 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAA   47 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            367999988 9999999999999999999999998765543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.85  E-value=0.071  Score=46.81  Aligned_cols=32  Identities=34%  Similarity=0.499  Sum_probs=29.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~  179 (535)
                      +||+|+|+|.+|+.+|..|++.|. +++++|.+
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            589999999999999999999998 79999976

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.84  E-value=0.37  Score=46.25  Aligned_cols=39  Identities=31%  Similarity=0.294  Sum_probs=34.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|.|+ |.+|..+++.+++.|++|++.+++++..+..
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM   45 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57899987 8899999999999999999999998876544

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=93.83  E-value=0.084  Score=40.39  Aligned_cols=30  Identities=33%  Similarity=0.515  Sum_probs=27.0

Q ss_pred             EEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          152 ILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       152 vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      |||+|.-|.+.|..|.++|++|+++|.++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            899999999999999999999999998754

...

>PLN00016 RNA-binding protein; Provisional

Probab=93.82  E-value=0.14  Score=53.35  Aligned_cols=37  Identities=30%  Similarity=0.367  Sum_probs=33.1

Q ss_pred             CcceEEEE----eC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          146 RVKKVAIL----GG-GLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       146 ~~~kV~vI----G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      ..+||.|+    |+ |.+|+.++..|+++|++|++++++++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~   92 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP   92 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence            34789999    76 999999999999999999999998764

>PRK07832 short chain dehydrogenase; Provisional

Probab=93.81  E-value=0.18  Score=49.72  Aligned_cols=40  Identities=18%  Similarity=0.240  Sum_probs=34.1

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      +++.|+|+ |.+|..++..|++.|++|++++++++.++...
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~   41 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTV   41 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            36888876 99999999999999999999999987765443

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.78  E-value=0.27  Score=52.73  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=32.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      .+||+|+|.|..|.++|..|.+.|++|+++|.++.
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            35899999999999999999999999999998753

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.78  E-value=0.18  Score=49.14  Aligned_cols=43  Identities=21%  Similarity=0.219  Sum_probs=36.7

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      .++|.|.|+ |.+|..++..|+++|++|++.+++++..+...+.
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~   50 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADE   50 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Confidence            357888888 9999999999999999999999999876655433

>PRK07236 hypothetical protein; Provisional

Probab=93.78  E-value=0.071  Score=55.71  Aligned_cols=36  Identities=22%  Similarity=0.203  Sum_probs=33.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      +..+|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            457899999999999999999999999999998764

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=93.77  E-value=0.14  Score=49.77  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=34.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|+|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~   40 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL   40 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            46888986 9999999999999999999999998876543

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=93.74  E-value=0.27  Score=48.91  Aligned_cols=90  Identities=18%  Similarity=0.227  Sum_probs=52.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395          148 KKVAILGGGLMGSGIATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (535)
                      .||+|||+|.||..++..+.+ .++++. ++|+++++......         .+.|.            -...++++. +
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A---------~~~Gi------------~~~~~~~e~ll   60 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA---------RELGV------------KTSAEGVDGLL   60 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH---------HHCCC------------CEEECCHHHHh
Confidence            379999999999988776664 456655 67888875321110         01221            011223333 2


Q ss_pred             --cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          225 --KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       225 --~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                        .+.|+|++|.|.....  +..   ...+..+..++++++
T Consensus        61 ~~~dIDaV~iaTp~~~H~--e~a---~~al~aGk~VIdekP   96 (285)
T TIGR03215        61 ANPDIDIVFDATSAKAHA--RHA---RLLAELGKIVIDLTP   96 (285)
T ss_pred             cCCCCCEEEECCCcHHHH--HHH---HHHHHcCCEEEECCc
Confidence              4689999999866432  222   223345665555554

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=93.74  E-value=0.34  Score=45.07  Aligned_cols=89  Identities=15%  Similarity=0.147  Sum_probs=57.6

Q ss_pred             ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc--cC----
Q 009395          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV--LD----  220 (535)
Q Consensus       148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~--~~----  220 (535)
                      ++|+|||-+ ..|.++|..|.++|..|+++|.+.-..-.             ..+.+          +-+.+  .+    
T Consensus        63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~----------~hs~t~~~~~~~~  119 (197)
T cd01079          63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESI----------RHEKHHVTDEEAM  119 (197)
T ss_pred             CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------ccccc----------ccccccccchhhH
Confidence            689999985 56999999999999999999876433200             00000          00001  12    


Q ss_pred             c-ccccCCCEEEEeccCChH-HHHHHHHHHHhhcCCCceeeecCCcCc
Q 009395          221 Y-ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTID  266 (535)
Q Consensus       221 ~-~~~~~aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~~  266 (535)
                      + +.+++||+||.|++..-- ++.       +.+++++++++......
T Consensus       120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~~d  160 (197)
T cd01079         120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASIKN  160 (197)
T ss_pred             HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCCcC
Confidence            2 347899999999974322 233       35678999887665543

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=93.72  E-value=0.081  Score=49.79  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=30.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      .||.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            579999999999999999999998 699999763

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.72  E-value=0.18  Score=48.98  Aligned_cols=40  Identities=25%  Similarity=0.315  Sum_probs=35.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++++++++..+...
T Consensus         5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~   45 (258)
T PRK12429          5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA   45 (258)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            57999986 99999999999999999999999988766543

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=93.70  E-value=0.06  Score=54.85  Aligned_cols=33  Identities=33%  Similarity=0.375  Sum_probs=29.2

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      +|+|||+|.-|..+|..|+++|++|+++|+++.
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            699999999999999999999999999999755

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08163 salicylate hydroxylase; Provisional

Probab=93.70  E-value=0.072  Score=55.75  Aligned_cols=34  Identities=35%  Similarity=0.401  Sum_probs=32.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      .+|.|||+|..|...|..|+++|++|+++|++++
T Consensus         5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            5799999999999999999999999999999865

>PRK09186 flagellin modification protein A; Provisional

Probab=93.68  E-value=0.18  Score=49.05  Aligned_cols=40  Identities=28%  Similarity=0.482  Sum_probs=34.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus         5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~   45 (256)
T PRK09186          5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELL   45 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHH
Confidence            57888887 89999999999999999999999988776544

>PRK10637 cysG siroheme synthase; Provisional

Probab=93.63  E-value=0.4  Score=51.34  Aligned_cols=129  Identities=20%  Similarity=0.288  Sum_probs=77.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      ++|.|||+|.++..=+..|+..|.+|+++...  ++- ..           ..+.|.+.         .+.-.-..+++.
T Consensus        13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~-~~-----------l~~~~~i~---------~~~~~~~~~dl~   71 (457)
T PRK10637         13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQF-TA-----------WADAGMLT---------LVEGPFDESLLD   71 (457)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHH-HH-----------HHhCCCEE---------EEeCCCChHHhC
Confidence            68999999999999899999999999998543  321 11           11222221         010011224588


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCC--CCCCEEEEEeCCCC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA--HVMPLLEIVRTNQT  303 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~--~~~~lveiv~~~~t  303 (535)
                      ++++||.|+. |.++-+.    |...+....+++.+.. -+           +   ...|+.|.  ..++++.-+...+.
T Consensus        72 ~~~lv~~at~-d~~~n~~----i~~~a~~~~~lvN~~d-~~-----------~---~~~f~~pa~~~~g~l~iaisT~G~  131 (457)
T PRK10637         72 TCWLAIAATD-DDAVNQR----VSEAAEARRIFCNVVD-AP-----------K---AASFIMPSIIDRSPLMVAVSSGGT  131 (457)
T ss_pred             CCEEEEECCC-CHHHhHH----HHHHHHHcCcEEEECC-Cc-----------c---cCeEEEeeEEecCCEEEEEECCCC
Confidence            9999998875 4444444    4444444445543332 11           1   12345553  34667777777778


Q ss_pred             CHHHHHHHHHHHHh
Q 009395          304 SPQVIVDLLDIGKK  317 (535)
Q Consensus       304 s~e~~~~~~~l~~~  317 (535)
                      +|.....+++-++.
T Consensus       132 sP~~a~~lr~~ie~  145 (457)
T PRK10637        132 SPVLARLLREKLES  145 (457)
T ss_pred             CcHHHHHHHHHHHH
Confidence            88777777666655

>PRK08643 acetoin reductase; Validated

Probab=93.62  E-value=0.15  Score=49.64  Aligned_cols=40  Identities=25%  Similarity=0.340  Sum_probs=33.7

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      +++.|+|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~   43 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAA   43 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            35677776 89999999999999999999999987765543

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=93.57  E-value=0.08  Score=54.92  Aligned_cols=32  Identities=25%  Similarity=0.215  Sum_probs=30.2

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      .|+|||+|.+|.++|..|++.|++|+++|+..
T Consensus         5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            59999999999999999999999999999864

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.56  E-value=0.17  Score=50.08  Aligned_cols=71  Identities=20%  Similarity=0.195  Sum_probs=52.0

Q ss_pred             ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      ++|+|||-+. .|.++|..|.+.|..|++++....                                      ++ +.++
T Consensus       165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~--------------------------------------~l~~~~~  206 (287)
T PRK14176        165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD--------------------------------------DLKKYTL  206 (287)
T ss_pred             CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC--------------------------------------CHHHHHh
Confidence            6899999987 899999999999999999884322                                      22 2357


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +||+||.|+--.--+.       .+.+++++++++..+
T Consensus       207 ~ADIvv~AvG~p~~i~-------~~~vk~gavVIDvGi  237 (287)
T PRK14176        207 DADILVVATGVKHLIK-------ADMVKEGAVIFDVGI  237 (287)
T ss_pred             hCCEEEEccCCccccC-------HHHcCCCcEEEEecc
Confidence            8999999874211111       236788998877554

>PRK12939 short chain dehydrogenase; Provisional

Probab=93.50  E-value=0.16  Score=49.08  Aligned_cols=40  Identities=18%  Similarity=0.138  Sum_probs=34.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|+|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus         8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~   48 (250)
T PRK12939          8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA   48 (250)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            67889887 99999999999999999999999988766543

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=93.50  E-value=0.17  Score=50.42  Aligned_cols=100  Identities=17%  Similarity=0.083  Sum_probs=68.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++++|+|.|.+|+..|.++-.-|..|+.||.- +.....             ..|             +...+-.+.+..
T Consensus       147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~-------------a~g-------------vq~vsl~Eil~~  200 (406)
T KOG0068|consen  147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAE-------------AFG-------------VQLVSLEEILPK  200 (406)
T ss_pred             cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHH-------------hcc-------------ceeeeHHHHHhh
Confidence            68999999999999999998889999999863 332211             112             112222245789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~  274 (535)
                      ||+|-.-+|-.++.++-+-.+....++++.-++ |+| +  +....+-+.+
T Consensus       201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriI-N~aRGGvVDe~ALv~Al  250 (406)
T KOG0068|consen  201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRII-NVARGGVVDEPALVRAL  250 (406)
T ss_pred             cCEEEEccCCCcchhhccCHHHHHHhhCCcEEE-EecCCceechHHHHHHH
Confidence            999999998877776655566667788888654 444 2  3344454444

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=93.49  E-value=0.08  Score=55.27  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ...|.|||+|..|.+.|..|+++|++|+++|+++.
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            34799999999999999999999999999998753

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.47  E-value=0.61  Score=49.74  Aligned_cols=34  Identities=26%  Similarity=0.172  Sum_probs=31.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ++|.|+|.|.+|.++|..|++.|++|+++|.+..
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~   39 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF   39 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence            5799999999999999999999999999998754

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=93.46  E-value=0.13  Score=50.19  Aligned_cols=40  Identities=13%  Similarity=0.233  Sum_probs=34.8

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..+|..|+++|++|++.+++.+..+...
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~   47 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAA   47 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence            46888886 99999999999999999999999988766543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=93.45  E-value=0.15  Score=49.31  Aligned_cols=39  Identities=21%  Similarity=0.221  Sum_probs=33.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|.|+ |.+|..++..|+++|++|++.+++++.....
T Consensus         7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~   46 (251)
T PRK12826          7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAAT   46 (251)
T ss_pred             CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57889985 9999999999999999999999998765443

>PRK06753 hypothetical protein; Provisional

Probab=93.44  E-value=0.08  Score=54.91  Aligned_cols=34  Identities=35%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ++|.|||+|.-|.+.|..|+++|++|+++++++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            4799999999999999999999999999998865

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=93.40  E-value=1.7  Score=43.87  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=36.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|+|+|+|-+|.+-.+.+..+|. .++.+|+++++++.++
T Consensus       187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~  227 (366)
T COG1062         187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK  227 (366)
T ss_pred             CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH
Confidence            579999999999999999999987 6888999999988775

>PRK07063 short chain dehydrogenase; Provisional

Probab=93.40  E-value=0.16  Score=49.62  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=34.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++...+
T Consensus         8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~   49 (260)
T PRK07063          8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAA   49 (260)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46777776 899999999999999999999999887765543

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=93.39  E-value=0.29  Score=44.79  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=31.1

Q ss_pred             CCCcceEEEEeCChhhHHHHH-HHH-hCCCcE-EEEeCCHHHH
Q 009395          144 PRRVKKVAILGGGLMGSGIAT-ALI-LSNYPV-ILKEVNEKFL  183 (535)
Q Consensus       144 ~~~~~kV~vIG~G~mG~~iA~-~l~-~~G~~V-~l~d~~~~~~  183 (535)
                      ..++.+|.|||+|++|.+++. .+. ++|+++ -++|.+++.+
T Consensus        81 ~~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V  123 (211)
T COG2344          81 QDKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV  123 (211)
T ss_pred             CCcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh
Confidence            345789999999999999985 333 567764 5789999865

>cd05295 MDH_like Malate dehydrogenase-like

Probab=93.36  E-value=0.33  Score=51.33  Aligned_cols=98  Identities=14%  Similarity=0.055  Sum_probs=61.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhC---CC----cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009395          148 KKVAILGG-GLMGSGIATALILS---NY----PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG  217 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~---G~----~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  217 (535)
                      -+|+|-|+ |.+|-++...+++-   |.    .++++|+  +.+.++...-.+++..-              ..+..+..
T Consensus       124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~--------------pll~~v~i  189 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAF--------------PLLRGISV  189 (452)
T ss_pred             eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHH--------------hhcCCcEE
Confidence            57999988 99999999888864   42    5788999  56665544333332211              11112222


Q ss_pred             -ccCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCC-Cceee
Q 009395          218 -VLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPP-HCILA  259 (535)
Q Consensus       218 -~~~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~-~~ii~  259 (535)
                       +.+++++++||+||.+.  |.            +..+.+.+...|.++.++ ..|++
T Consensus       190 ~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlV  247 (452)
T cd05295         190 TTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIV  247 (452)
T ss_pred             EECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence             45678899999999875  21            333455666677777763 33444

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=93.35  E-value=0.05  Score=51.13  Aligned_cols=48  Identities=23%  Similarity=0.285  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhh
Q 009395          460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFI  508 (535)
Q Consensus       460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~  508 (535)
                      .+.+||+..+++||.-+++..|+. +..|+|.+|-.|+|.+---.|++.
T Consensus       189 Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lE  236 (313)
T KOG2305|consen  189 GFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLE  236 (313)
T ss_pred             cceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchh
Confidence            379999999999999999999998 899999999999998865555554

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=93.33  E-value=0.8  Score=43.63  Aligned_cols=98  Identities=19%  Similarity=0.103  Sum_probs=57.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH----HHH-hhhccccc-ccCc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE----KFE-KTISLLTG-VLDY  221 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~----~~~-~~~~~i~~-~~~~  221 (535)
                      .+|.++|+|.  +.-|..|+++|++|+.+|+++..++.+.+.          .+.....    ... ..-.+++. ..|+
T Consensus        36 ~rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~D~  103 (213)
T TIGR03840        36 ARVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFAE----------NGLTPTVTQQGEFTRYRAGNIEIFCGDF  103 (213)
T ss_pred             CeEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHHH----------cCCCcceeccccceeeecCceEEEEccC
Confidence            3799999998  355677899999999999999999865321          1110000    000 00011211 1122


Q ss_pred             cc-----ccCCCEEEEec---cCChHHHHHHHHHHHhhcCCCce
Q 009395          222 ES-----FKDVDMVIEAI---IENVSLKQQIFADLEKYCPPHCI  257 (535)
Q Consensus       222 ~~-----~~~aDlVI~av---pe~~~~k~~v~~~l~~~~~~~~i  257 (535)
                      ..     ...-|.|+++.   .-++......++.+...++++..
T Consensus       104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~  147 (213)
T TIGR03840       104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR  147 (213)
T ss_pred             CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence            11     22358888753   11345567788899999998763

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK08251 short chain dehydrogenase; Provisional

Probab=93.30  E-value=0.22  Score=48.16  Aligned_cols=40  Identities=23%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..++..|+++|++|++.+++++..+...
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~   43 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELK   43 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            46778875 99999999999999999999999988765543

>PRK05854 short chain dehydrogenase; Provisional

Probab=93.28  E-value=0.33  Score=49.18  Aligned_cols=43  Identities=28%  Similarity=0.353  Sum_probs=36.1

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      +++.|.|+ +.+|..+|..|++.|++|++.+|+.+..+.+.+.+
T Consensus        15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l   58 (313)
T PRK05854         15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI   58 (313)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56777776 88999999999999999999999998877665444

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=93.26  E-value=0.089  Score=54.66  Aligned_cols=31  Identities=29%  Similarity=0.340  Sum_probs=29.3

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      .|+|||+|.+|.++|..|+++|++|+++|..
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~   32 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF   32 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4899999999999999999999999999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=93.25  E-value=0.24  Score=49.96  Aligned_cols=88  Identities=24%  Similarity=0.197  Sum_probs=59.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +++.|.|.|-.|.++|..+...|..|++++++|-..-++.                        ++.....+--++...+
T Consensus       210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~------------------------MdGf~V~~m~~Aa~~g  265 (420)
T COG0499         210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA------------------------MDGFRVMTMEEAAKTG  265 (420)
T ss_pred             ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh------------------------hcCcEEEEhHHhhhcC
Confidence            5788889999999999999999999999999986532221                        1222223323557788


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      |++|.|.-..--+.    .+-...+++++|++ |...
T Consensus       266 DifiT~TGnkdVi~----~eh~~~MkDgaIl~-N~GH  297 (420)
T COG0499         266 DIFVTATGNKDVIR----KEHFEKMKDGAILA-NAGH  297 (420)
T ss_pred             CEEEEccCCcCccC----HHHHHhccCCeEEe-cccc
Confidence            99999885432222    23344578888775 5543

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=93.25  E-value=0.47  Score=47.83  Aligned_cols=146  Identities=22%  Similarity=0.295  Sum_probs=77.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCc---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYP---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      .+|+|+|+ |..|.-+...|....++   +.++-.....=++.           .+.+.-       ...-.....+..+
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~-----------~~f~~~-------~~~v~~~~~~~~~   63 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKY-----------IEFGGK-------SIGVPEDAADEFV   63 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcc-----------ccccCc-------cccCccccccccc
Confidence            58999988 99999999999987653   33333222211100           001000       0000011134455


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCC----CEEEEEe
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVM----PLLEIVR  299 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~----~lveiv~  299 (535)
                      .+++|+|+.|.+.+..  +++..++.   ..++++++|+|....+.        +--+-+-..||-+..    +- .++.
T Consensus        64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm~~--------DVPLVVPeVN~~~l~~~~~rg-~Iia  129 (334)
T COG0136          64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRMDP--------DVPLVVPEVNPEHLIDYQKRG-FIIA  129 (334)
T ss_pred             cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCcccccCC--------CCCEecCCcCHHHHHhhhhCC-CEEE
Confidence            7799999999986543  45555443   46799999999764431        111111122332110    11 3555


Q ss_pred             CCCCCH-HHHHHHHHHHHhcCCceEEe
Q 009395          300 TNQTSP-QVIVDLLDIGKKIKKTPIVV  325 (535)
Q Consensus       300 ~~~ts~-e~~~~~~~l~~~lGk~~i~v  325 (535)
                      +++++- ..+-.+.++.+..|-.-+.+
T Consensus       130 npNCst~~l~~aL~PL~~~~~i~~v~V  156 (334)
T COG0136         130 NPNCSTIQLVLALKPLHDAFGIKRVVV  156 (334)
T ss_pred             CCChHHHHHHHHHHHHHhhcCceEEEE
Confidence            555543 33455666777666444433

>PRK06847 hypothetical protein; Provisional

Probab=93.24  E-value=0.089  Score=54.58  Aligned_cols=35  Identities=43%  Similarity=0.545  Sum_probs=32.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      +++|+|||+|.-|...|..|.+.|++|++++++++
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            56899999999999999999999999999998754

>PRK05650 short chain dehydrogenase; Provisional

Probab=93.21  E-value=0.22  Score=49.06  Aligned_cols=40  Identities=28%  Similarity=0.346  Sum_probs=34.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|+|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~   41 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETL   41 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            36888886 99999999999999999999999988766544

>PRK07478 short chain dehydrogenase; Provisional

Probab=93.20  E-value=0.25  Score=48.07  Aligned_cols=40  Identities=18%  Similarity=0.180  Sum_probs=34.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      +++.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus         7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~   47 (254)
T PRK07478          7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLV   47 (254)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            46778876 89999999999999999999999988766544

>PRK07074 short chain dehydrogenase; Provisional

Probab=93.18  E-value=0.15  Score=49.64  Aligned_cols=40  Identities=18%  Similarity=0.310  Sum_probs=34.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~   43 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFA   43 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            46888887 89999999999999999999999988765443

>PRK05867 short chain dehydrogenase; Provisional

Probab=93.16  E-value=0.2  Score=48.74  Aligned_cols=40  Identities=23%  Similarity=0.209  Sum_probs=34.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      +++.|.|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus        10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   50 (253)
T PRK05867         10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLA   50 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            46778887 89999999999999999999999988766543

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=93.15  E-value=0.22  Score=49.26  Aligned_cols=39  Identities=31%  Similarity=0.428  Sum_probs=33.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      +++.|.|+ |.+|..++..|++.|++|++++++.+..+..
T Consensus        11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   50 (278)
T PRK08277         11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAV   50 (278)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56778887 8999999999999999999999998766543

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=93.13  E-value=0.22  Score=52.38  Aligned_cols=32  Identities=19%  Similarity=0.476  Sum_probs=29.5

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC------cEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNY------PVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~------~V~l~d~~~  180 (535)
                      ||.|||+|.+|+.++..|+..|+      +++++|.+.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~   38 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDN   38 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence            58999999999999999999998      899999764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK09242 tropinone reductase; Provisional

Probab=93.08  E-value=0.22  Score=48.52  Aligned_cols=40  Identities=18%  Similarity=0.184  Sum_probs=34.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      +++.|+|+ |.+|..++..|++.|++|++.+++.+.++...
T Consensus        10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~   50 (257)
T PRK09242         10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQAR   50 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            56888886 89999999999999999999999988765543

>PRK07024 short chain dehydrogenase; Provisional

Probab=93.07  E-value=0.18  Score=49.29  Aligned_cols=39  Identities=23%  Similarity=0.149  Sum_probs=33.7

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus         3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~   42 (257)
T PRK07024          3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAF   42 (257)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46888875 9999999999999999999999998776543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=93.03  E-value=0.093  Score=59.04  Aligned_cols=33  Identities=39%  Similarity=0.689  Sum_probs=31.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      .+|+|||+|.+|.++|..|++.|++|+++|++.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            479999999999999999999999999999874

>PRK11579 putative oxidoreductase; Provisional

Probab=93.03  E-value=0.51  Score=48.55  Aligned_cols=67  Identities=13%  Similarity=0.215  Sum_probs=43.4

Q ss_pred             ceEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          148 KKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      .||+|||+|.||.. .+..+... +++++ ++|+++++...             +.+            .....+++++ 
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~~------------~~~~~~~~~el   59 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA-------------DWP------------TVTVVSEPQHL   59 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh-------------hCC------------CCceeCCHHHH
Confidence            58999999999984 45555543 67765 68998765321             001            1123445544 


Q ss_pred             c--cCCCEEEEeccCChH
Q 009395          224 F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       224 ~--~~aDlVI~avpe~~~  239 (535)
                      +  .+.|+|+.|+|....
T Consensus        60 l~~~~vD~V~I~tp~~~H   77 (346)
T PRK11579         60 FNDPNIDLIVIPTPNDTH   77 (346)
T ss_pred             hcCCCCCEEEEcCCcHHH
Confidence            3  468999999997654

>PRK08374 homoserine dehydrogenase; Provisional

Probab=92.99  E-value=0.44  Score=48.77  Aligned_cols=21  Identities=38%  Similarity=0.499  Sum_probs=19.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHh
Q 009395          148 KKVAILGGGLMGSGIATALIL  168 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~  168 (535)
                      .+|+|+|.|++|+.++..+.+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~   23 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAE   23 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHH
Confidence            489999999999999998876

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.98  E-value=0.17  Score=49.39  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=29.1

Q ss_pred             ceEEEEeCC---hhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G---~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      +++.|.|++   .+|.++|..|++.|++|++.+++.
T Consensus         8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~   43 (252)
T PRK06079          8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND   43 (252)
T ss_pred             CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence            567788885   799999999999999999999884

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=92.97  E-value=0.11  Score=53.99  Aligned_cols=35  Identities=31%  Similarity=0.399  Sum_probs=32.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ..+|+|||+|.+|.+.|..|++.|.+|+++|....
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~   38 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA   38 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            46899999999999999999999999999998754

>PRK07109 short chain dehydrogenase; Provisional

Probab=92.93  E-value=0.29  Score=50.12  Aligned_cols=42  Identities=29%  Similarity=0.241  Sum_probs=35.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus         9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~   51 (334)
T PRK07109          9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAE   51 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            56888887 8999999999999999999999998877655443

>PRK08265 short chain dehydrogenase; Provisional

Probab=92.90  E-value=0.17  Score=49.61  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=33.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      +++.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus         7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   46 (261)
T PRK08265          7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAV   46 (261)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56788887 9999999999999999999999998766544

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.86  E-value=0.32  Score=52.16  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=31.9

Q ss_pred             cceEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSG-IATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~-iA~~l~~~G~~V~l~d~~~~  181 (535)
                      .++|.|||.|..|.+ +|+.|.+.|++|+++|.++.
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            468999999999999 79999999999999998754

>PRK06139 short chain dehydrogenase; Provisional

Probab=92.84  E-value=0.27  Score=50.25  Aligned_cols=42  Identities=24%  Similarity=0.256  Sum_probs=36.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus         8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~   50 (330)
T PRK06139          8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEE   50 (330)
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            56888888 8999999999999999999999999887765543

>PRK07588 hypothetical protein; Provisional

Probab=92.80  E-value=0.11  Score=54.39  Aligned_cols=34  Identities=32%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ++|.|||+|..|.+.|..|+++|++|+++++.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3799999999999999999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	535
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		0.0
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		1e-64
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-63
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		2e-63
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		2e-63
1zcj_A	463	Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas		2e-54
3k6j_A	460	Crystal Structure Of The Dehydrogenase Part Of Mult		6e-50
3mog_A	483	Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge		9e-40
1f12_A	310	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-		1e-38
1f0y_A	302	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac		1e-38
1lso_A	302	Crystal Structure Of The S137a Mutant Of L-3-Hydrox		3e-38
1lsj_A	302	Crystal Structure Of The E110q Mutant Of L-3-hydrox		3e-38
1il0_A	302	X-Ray Crystal Structure Of The E170q Mutant Of Huma		3e-38
3had_A	308	Biochemical Characterization And Structure Determin		4e-38
3hdh_A	302	Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge		5e-38
1m76_A	302	Crystal Structure Of The S137c Mutant Of L-3-Hydrox		5e-38
1m75_A	302	Crystal Structure Of The N208s Mutant Of L-3-Hydrox		6e-38
3rqs_A	324	Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh		1e-29
2hdh_A	293	Biochemical Characterization And Structure Determin		2e-28
1zej_A	293	Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog		5e-21
4dyd_A	283	Substrate-Directed Dual Catalysis Of Dicarbonyl Com		1e-17
3f3s_A	313	The Crystal Structure Of Human Lambda-Crystallin, C		9e-13
3ado_A	319	Crystal Structure Of The Rabbit L-Gulonate 3-Dehydr		2e-11

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/503 (80%), Positives = 456/503 (90%)
Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+  R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225
Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI  FA+AQ  K+APN+ HP++C+D +E G+VSGPRAGL+KEAE   ++++ +T K 
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285
Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345
Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405
Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465
Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
           N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA  LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525
Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRL DLVGFGVAIAT  QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585
Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           YLYD++RKA PDPE+KK+IEKARS+SGV +DPK A LSEKDI+EM FFPVVNEACRVFAE
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAE 645
Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDIA +MGMGFPPYR
Sbjct: 646 GIAVKAADLDIAGIMGMGFPPYR 668

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 166/509 (32%), Positives = 254/509 (49%), Gaps = 19/509 (3%)
Query: 4   TSKPVKGEEAHSLGLVDAVVAPNQL-------VSTARQWALDILEHRRPWVATLYKTDKI 56
           + K  + E+A  +  VDAVV  ++L       +  A    LD    R+P +  L K + I
Sbjct: 170 SGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKL-KLNAI 228
Query: 57  EPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
           E +        F   QA    PN   P+  I  ++     G    L+ EA  F KL ++ 
Sbjct: 229 EQMMAFETAKGFVAGQA---GPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTS 285
Query: 117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILK 176
               L+ +F   +   K   V D     + VK+ A+LG G+MG GIA        P+++K
Sbjct: 286 ASNCLIGLFLNDQELKKKAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMK 343
Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIE 236
           ++NE  +E G+      L  RV KG+MT  K  + ++ +   L Y  F +VD+V+EA++E
Sbjct: 344 DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVE 403
Query: 237 NVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE 296
           N  +KQ + A++E +     ILASNTSTI ++L+ +     +  VG HFF+P H+MPL+E
Sbjct: 404 NPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVE 463
Query: 297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYL 356
           ++R  ++S   +   +   KK+ K PIVV +C GF VNR+ FPY      LV  G D   
Sbjct: 464 VIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVR 523
Query: 357 IDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTY--KSMIIPIMQEDKRAGE 414
           ID+ + KFG PMGP  L D+VG            E FP+R    +   I  + E KR G+
Sbjct: 524 IDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQ 583
Query: 415 TTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEA 474
              KGFY Y+  +K       KK ++ +       I  +   ++++DI+  +  P+  E 
Sbjct: 584 KNGKGFYAYEADKKGKQ----KKLVDSSVLEVLKPIVYEQRDVTDEDIINWMMIPLCLET 639
Query: 475 CRVFAEGIAVKAADLDIASVMGMGFPPYR 503
            R   +GI   AA+ D+  V G+GFP +R
Sbjct: 640 VRCLEDGIVETAAEADMGLVYGIGFPLFR 668

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score =  240 bits (612), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 163/547 (29%), Positives = 271/547 (49%), Gaps = 31/547 (5%)
Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           ++ + K +  +EA  LG++DAVV  +  V  A ++A  I++  +P          +  L 
Sbjct: 170 LITSGKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIID--KPIEPRRIFNKPVPSLP 226
Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
               +F  A A+ RKQ P +  P  C+  ++A V      G+++E + F  L  S   K+
Sbjct: 227 NMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKA 286
Query: 121 LVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKE 177
           L + FFA++  +K     G +    + + V  V +LG G MG GIA +       V+  E
Sbjct: 287 LQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 346
Query: 178 VNEKFLEAGIGRVRANLQ---SRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 234
            + K L+A    +   L+   SR  +      K +   S  T     +    VD+V+EA+
Sbjct: 347 SDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-----KELSTVDLVVEAV 401
Query: 235 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL 294
            E+++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSPAHVM L
Sbjct: 402 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 461
Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
           LE++ +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+E G+  
Sbjct: 462 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 521
Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----TYKSMII 403
             +D  + +FG  MGPFR++DL G  V          TG       P R    +  S + 
Sbjct: 522 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 581
Query: 404 PIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKD 461
            ++ E  R G+ T KG+Y YD+   R   PDP +  F+ + R +  +    +   +S+++
Sbjct: 582 DMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEE 637
Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKN 521
           I+E   + ++NEA R+  EG+A +   +D+  + G G+P ++     +       +  + 
Sbjct: 638 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEK 697
Query: 522 LLCYFDQ 528
           L  Y+ Q
Sbjct: 698 LQKYYRQ 704

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score =  240 bits (612), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 159/544 (29%), Positives = 268/544 (49%), Gaps = 25/544 (4%)
Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           ++ + K +  +EA  LG++DAVV  +  V  A ++A  I++  +P          +  L 
Sbjct: 155 LITSGKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIID--KPIEPRRIFNKPVPSLP 211
Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
               +F  A A+ RKQ P +  P  C+  ++A V      G+++E + F  L  S   K+
Sbjct: 212 NMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKA 271
Query: 121 LVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKE 177
           L + FFA++  +K     G +    + + V  V +LG G MG GIA +       V+  E
Sbjct: 272 LQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 331
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
            + K L+A    +   L+    +     +   K     +     +    VD+V+EA+ E+
Sbjct: 332 SDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS--STKELSTVDLVVEAVFED 389
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
           ++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSPAHVM LLE+
Sbjct: 390 MNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEV 449
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
           + +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+E G+    +
Sbjct: 450 IPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDV 509
Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----TYKSMIIPIM 406
           D  + +FG  MGPFR++DL G  V          TG       P R    +  S +  ++
Sbjct: 510 DGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDML 569
Query: 407 QEDKRAGETTRKGFYLYDER--RKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVE 464
            E  R G+ T KG+Y YD+   R   PDP +  F+ + R +  +    +   +S+++I+E
Sbjct: 570 CEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEEILE 625
Query: 465 MIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLC 524
              + ++NEA R+  EG+A +   +D+  + G G+P ++     +       +  + L  
Sbjct: 626 RCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQK 685
Query: 525 YFDQ 528
           Y+ Q
Sbjct: 686 YYRQ 689

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score =  239 bits (611), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 159/544 (29%), Positives = 268/544 (49%), Gaps = 25/544 (4%)
Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           ++ + K +  +EA  LG++DAVV  +  V  A ++A  I++  +P          +  L 
Sbjct: 170 LITSGKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIID--KPIEPRRIFNKPVPSLP 226
Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
               +F  A A+ RKQ P +  P  C+  ++A V      G+++E + F  L  S   K+
Sbjct: 227 NMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKA 286
Query: 121 LVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKE 177
           L + FFA++  +K     G +    + + V  V +LG G MG GIA +       V+  E
Sbjct: 287 LQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVE 346
Query: 178 VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN 237
            + K L+A    +   L+    +     +   K     +     +    VD+V+EA+ E+
Sbjct: 347 SDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS--STKELSTVDLVVEAVFED 404
Query: 238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEI 297
           ++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSPAHVM LLE+
Sbjct: 405 MNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEV 464
Query: 298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLI 357
           + +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+E G+    +
Sbjct: 465 IPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDV 524
Query: 358 DRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----TYKSMIIPIM 406
           D  + +FG  MGPFR++DL G  V          TG       P R    +  S +  ++
Sbjct: 525 DGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDML 584
Query: 407 QEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVE 464
            E  R G+ T KG+Y YD+   R   PDP +  F+ + R +  +    +   +S+++I+E
Sbjct: 585 CEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQRTISKEEILE 640
Query: 465 MIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLC 524
              + ++NEA R+  EG+A +   +D+  + G G+P ++     +       +  + L  
Sbjct: 641 RCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQK 700
Query: 525 YFDQ 528
           Y+ Q
Sbjct: 701 YYRQ 704

>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463

Iteration: 1
 Score =  209 bits (533), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/408 (31%), Positives = 210/408 (51%), Gaps = 28/408 (6%)
Query: 115 SETCKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY 171
           S   K+L + FFA++  +K     G +    + + V  V +LG G MG GIA +      
Sbjct: 2   SGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGI 61
Query: 172 PVILKEVNEKFLEAGIGRVRANLQ---SRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD 228
            V+  E + K L+A    +   L+   SR  +      K +   S  T     +    VD
Sbjct: 62  SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-----KELSTVD 116
Query: 229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSP 288
           +V+EA+ E+++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSP
Sbjct: 117 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSP 176
Query: 289 AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLV 348
           AHVM LLE++ +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+
Sbjct: 177 AHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLL 236
Query: 349 ERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIA-------TGMQFIENFPER----T 397
           E G+    +D  + +FG  MGPFR++DL G  V          TG       P R    +
Sbjct: 237 EEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNS 296
Query: 398 YKSMIIPIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVAIDPKFA 455
             S +  ++ E  R G+ T KG+Y YD+   R   PDP +  F+ + R +  +    +  
Sbjct: 297 RYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHI----EQR 352
Query: 456 KLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
            +S+++I+E   + ++NEA R+  EG+A +   +D+  + G G+P ++
Sbjct: 353 TISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHK 400

>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460

Iteration: 1
 Score =  195 bits (495), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 193/374 (51%), Gaps = 38/374 (10%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK---- 202
           V  VAI+GGG MG  +A    L+     L   NE+       R +  L+    + K    
Sbjct: 54  VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ-------RCKQELEVMYAREKSFKR 106
Query: 203 MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT 262
           +  ++ EK  + L    D+    + D+++E++IE++ LK+++FA+LE  C   CI  +NT
Sbjct: 107 LNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNT 166
Query: 263 STIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322
           S++DLN I         +VG HFF+PA+V+ L+EI+  + TS Q I       + IKK P
Sbjct: 167 SSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLP 226
Query: 323 IVVGNCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGV 381
           ++VGNC  F  NR+   Y  Q+  L+ E G   + ID+ IT FG  MGP  +AD+ GF V
Sbjct: 227 VLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDV 286
Query: 382 AIATGMQFI--ENFPERTYKSMIIPIMQED---KRAGETTRKGFYLYDER-RKASPDPEV 435
                M+ +  EN  E        PI +E    KR G  T KGFY YD++ ++   D E+
Sbjct: 287 -----MEKLKKENGLEPN------PIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEM 335
Query: 436 KKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVM 495
           ++ I +    +   I      ++++D++  + +P VNE  R   EG+    + +DI  ++
Sbjct: 336 EQIIRRVSQNAKSNIQI----INDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFIL 391
Query: 496 GMGFP-----PYRF 504
           G G+P     P RF
Sbjct: 392 GFGWPIHSGGPMRF 405

>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483

Iteration: 1
 Score =  161 bits (407), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 199/453 (43%), Gaps = 70/453 (15%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           V+ VA++G G MG+GIA       + V+L +++ + L   I  + A L SRV +GK+T E
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
             E+T+  L  V D  +    D+VIEA  E + +K+ +FA L + CPP  +L +NTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
           +  I     + +R+ G HFF+PA VM L+E+V    T+ +V+  L ++     K P+   
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 327 NCTGFAVNRMFFPYTQAAF-LLVERGTDLYLIDRAITK-FGMPMGPFRLADLVGFGVAIA 384
           +  GF VNR+  PY   A+  L E+     +ID A+    G PMGP  L DL+G  V  A
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFA 244
Query: 385 TGMQFIENF-------PERTYKSMII---------------------------------P 404
                   F       P    + ++I                                 P
Sbjct: 245 VTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSP 304
Query: 405 IMQEDKRAGETTRKGFYLYDER---------RKASPDPEVKKFIEKARSMSGVAIDPKFA 455
           +  E K  G T      L + +         R A P   + K   K  +++  A++P  A
Sbjct: 305 MKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNPDSA 364
Query: 456 --------KLSEKDIVEMIFFP----------VVNEACRVFAEGIAVKAADLDIASVMGM 497
                   +   K ++++  +P          ++NEA     +G+A +  D+D A  +G+
Sbjct: 365 TRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEALDALQKGVASE-QDIDTAMRLGV 423
Query: 498 GFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR 530
            +P          G+ +     +NL  ++ + R
Sbjct: 424 NYPYGPLAWGAQLGWQRILRLLENLQHHYGEER 456

>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310

Iteration: 1
 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302

Iteration: 1
 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  156 bits (394), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NT+++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTASLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score =  156 bits (394), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI++N+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302

Iteration: 1
 Score =  156 bits (394), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+++++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308

Iteration: 1
 Score =  155 bits (393), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 144/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K    H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302

Iteration: 1
 Score =  155 bits (392), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 152/291 (52%), Gaps = 18/291 (6%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S ++   D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  +   T  +DR  G HFF+P  +M L+E+V+T  TS + +  L+D  K + K
Sbjct: 135 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVAIATGMQFIENFPERTYKSMII---PIMQE---DKRAGETTRKGFYLY 423
               + T    I+ + E   ++ +    P M +   + + G+ T +GFY Y
Sbjct: 255 ----LDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKY 301

>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  155 bits (392), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 144/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NT ++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTCSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF VNR+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score =  155 bits (392), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 145/287 (50%), Gaps = 10/287 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG----- 201
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 15  VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 74
Query: 202 KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
           K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 75  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 134
Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 135 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 194
Query: 321 TPIVVGNCTGFAVNRMFFPYTQAAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVG 378
            P+   +  GF V+R+  PY   A  L ERG      ID A+    G PMGPF L D VG
Sbjct: 195 HPVSCKDTPGFIVSRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 254
Query: 379 FGVA--IATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
                 I  G   ++        S  +  +  + + G+ T +GFY Y
Sbjct: 255 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 301

>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 126/265 (47%), Gaps = 10/265 (3%)
Query: 169 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTISLLTGVLDYES 223
           + + V+L +  E  L      +  +L+   KK      K   E  EKT+S +    D  S
Sbjct: 59  TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS 118
Query: 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVG 282
                D+V+EAI+EN+ +K ++F  L+K+   H I ASNTS++ +  I   T  +DR  G
Sbjct: 119 VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAG 178
Query: 283 AHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQ 342
            HFF+P  V  L+E+++T  TS +    L+D  K + K P+   +  GF VNR+  PY  
Sbjct: 179 LHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLX 238
Query: 343 AAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGMQFIENFPERTY 398
            A  L ERG      ID A     G P GPF L D VG      I  G    +       
Sbjct: 239 EAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLHQ 298
Query: 399 KSMIIPIMQEDKRAGETTRKGFYLY 423
            S  +  +  + + G+ T +GFY Y
Sbjct: 299 PSPSLNKLVAENKFGKKTGEGFYKY 323

>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 124/265 (46%), Gaps = 10/265 (3%)
Query: 169 SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-----KMTQEKFEKTISLLTGVLDYES 223
           + + V+L +  E  L      +  +L+   KK      K   E   KT+S +    D  S
Sbjct: 26  TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIATSTDAAS 85
Query: 224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVG 282
                D+V+EAI+EN+ +K ++F  L+K    H I ASNTS++ +  I   T  +DR  G
Sbjct: 86  VVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQDRFAG 145
Query: 283 AHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQ 342
            HFF+P  V  L+E+++T  TS +    L+D  K + K P+   +  GF VNR+  PY  
Sbjct: 146 LHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLX 205
Query: 343 AAFLLVERG-TDLYLIDRAIT-KFGMPMGPFRLADLVGFGVA--IATGMQFIENFPERTY 398
            A  L ERG      ID A     G P GPF L D VG      I  G    +       
Sbjct: 206 EAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLHQ 265
Query: 399 KSMIIPIMQEDKRAGETTRKGFYLY 423
            S  +  +  + + G+ T +GFY Y
Sbjct: 266 PSPSLNKLVAENKFGKKTGEGFYKY 290

>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 136/284 (47%), Gaps = 35/284 (12%)
Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
           KV ++G GL G GIA A I S + V+L++V+EK LEA   ++   L S+++        F
Sbjct: 14  KVFVIGAGLXGRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEELLSKIE--------F 64
Query: 209 EKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN 268
             T+         E  KD D+V EA+ E+++ K ++  ++E+    +  L SNTS I ++
Sbjct: 65  TTTL---------EKVKDCDIVXEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVD 113
Query: 269 LIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC 328
            I ER  S  R +G H+ +P HV PL+EIV +  T  + +  +    +++ K  +V   C
Sbjct: 114 DIAERLDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVV---C 170
Query: 329 TGFA-VNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPM-----GPFRLADLVGFGVA 382
            G + VNR        A   +E G     +DR + K  + +     GP    D +G  VA
Sbjct: 171 KGQSLVNRFNAAVLSEASRXIEEGVRAEDVDR-VWKHHLGLLYTLFGPLGNLDYIGLDVA 229
Query: 383 IATGMQFIENFPERTYKSMIIPIMQEDKRAGET---TRKGFYLY 423
               +   + F +  +K      +QE  + GE      KG Y Y
Sbjct: 230 YYASLYLYKRFGDEKFKPP--EWLQEKIKKGEVGVKAGKGIYEY 271

>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 132/284 (46%), Gaps = 11/284 (3%)
Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK--GKMT 204
           +  V +LG G++GS IA       + V   ++N   L+A   R    L +  +K      
Sbjct: 4   ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEG-LAAVYEKEVAGAA 62
Query: 205 QEKFEKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS 263
               +K +  +    D  ++ KD D+VIEA+ E++ LK+ I+  L +  P   I A+N+S
Sbjct: 63  DGAAQKALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSS 122
Query: 264 T-IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTP 322
           T +  +L+G  T   D+ +  HF +   V    E++ T +T P+V   +++    I   P
Sbjct: 123 TLLPSDLVG-YTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVP 181
Query: 323 IVV-GNCTGFAVNRMFFPYTQAAF-LLVERGTDLYLIDRAI-TKFGMPMGPFRLADLVGF 379
           I +     G+ +N +  P   AA  LLV+   D   ID+      G P GPF + D+V  
Sbjct: 182 IELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIV-- 239
Query: 380 GVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLY 423
           G+  A  +  +    +R + + +     +  + G  T +GFY Y
Sbjct: 240 GLTTAYNISSVSGPKQREFAAYLKENYIDKGKLGLATGEGFYRY 283

>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 9/216 (4%)
Query: 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KF 208
           V I+G G++G   A       + V L ++ ++ +   +  +R  ++   + G +      
Sbjct: 6   VVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSV 65
Query: 209 EKTISLLTGVLDYESFKDVDMVI-EAIIENVSLKQQIFADLEKYCPPHCILASNTSTI-D 266
           E+ +SL++G  + +   +  M I E + E++ LK++IFA L+       IL+S+TS +  
Sbjct: 66  EEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMP 125
Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI-VV 325
             L     + K  IV AH  +P + +PL+E+V   +T+P  +     + KKI + P+ V 
Sbjct: 126 SKLFAGLVHVKQCIV-AHPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQ 184
Query: 326 GNCTGFAVNRMFFPYTQAAFLLVERG----TDLYLI 357
               GF +NR+ +     A+ LVE G    +DL L+
Sbjct: 185 KEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLV 220

>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase Length = 319

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 109/215 (50%), Gaps = 7/215 (3%)
Query: 150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KF 208
           V I+G GL+G   A       + V L ++  + +   +  +R  ++S  + G +      
Sbjct: 9   VLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSA 68
Query: 209 EKTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL 267
           E+ +SL++   +  E+ + V  + E + EN+ LK++IFA L+       +L+S++S +  
Sbjct: 69  EEQLSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLP 128
Query: 268 NLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPI-VVG 326
           + +        + + AH  +P + +PL+E+V   +TSP  +     + +KI ++P+ V+ 
Sbjct: 129 SKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLK 188
Query: 327 NCTGFAVNRMFFPYTQAAFLLVERG----TDLYLI 357
              GF +NR+ +     A+ LVE G    +DL L+
Sbjct: 189 EIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLV 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	535
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	0.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	0.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	0.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	1e-177
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	1e-169
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	9e-92
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	1e-26
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	7e-85
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	2e-75
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	8e-69
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	1e-11
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	1e-10
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	4e-07
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	1e-06
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	1e-06
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	2e-06
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	2e-06
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	2e-06
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	2e-06
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	3e-06
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	3e-06
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	3e-06
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	3e-06
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	3e-06
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	5e-06
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	6e-06
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	7e-06
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	7e-06
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	7e-06
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	8e-06
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	8e-06
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	8e-06
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	8e-06
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	8e-06
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	9e-06
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	9e-06
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	9e-06
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	9e-06
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	1e-05
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	1e-05
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	1e-05
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	1e-05
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	1e-05
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	2e-05
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	2e-05
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	2e-05
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	2e-05
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	2e-05
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-05
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	2e-05
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	2e-05
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	3e-05
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	3e-05
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	4e-05
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	4e-05
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	4e-05
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	4e-05
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	5e-05
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	7e-05
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	9e-05
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	1e-04
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	1e-04
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	1e-04
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	1e-04
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	1e-04
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	2e-04
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	2e-04
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	2e-04
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	3e-04
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	3e-04

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  663 bits (1712), Expect = 0.0
 Identities = 403/503 (80%), Positives = 456/503 (90%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
           M+LTSKPVK EE HSLGL+DAVV P +LV+TAR+WALDI+  R+PWV+++ KTDK+ PLG
Sbjct: 166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLG 225

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS 120
           EAREI  FA+AQ  K+APN+ HP++C+D +E G+VSGPRAGL+KEAE   ++++ +T K 
Sbjct: 226 EAREILTFAKAQTLKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKG 285

Query: 121 LVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE 180
           L+H+FF+QRGT+KVPGVTD GL PR++KKVAI+GGGLMGSGIATALILSNYPVILKEVNE
Sbjct: 286 LIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345

Query: 181 KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSL 240
           KFLEAGIGRV+ANLQSRV+KG M+QEKFEKT+SLL G LDYESF+DVDMVIEA+IEN+SL
Sbjct: 346 KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISL 405

Query: 241 KQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRT 300
           KQQIFADLEKYCP HCILASNTSTIDLN IGERT S+DRIVGAHFFSPAH+MPLLEIVRT
Sbjct: 406 KQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465

Query: 301 NQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRA 360
           N TS QVIVDLLD+GKKIKKTP+VVGNCTGFAVNRMFFPYTQAA  LVE G D YLIDRA
Sbjct: 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRA 525

Query: 361 ITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGF 420
           I+KFGMPMGPFRL DLVGFGVAIAT  QFIENF ERTYKSMIIP+MQEDKRAGE TRKGF
Sbjct: 526 ISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQEDKRAGEATRKGF 585

Query: 421 YLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAE 480
           YLYD++RKA PDPE+KK+IEKARS+SGV +DPK A LSEKDI+EM FFPVVNEACRVFAE
Sbjct: 586 YLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAE 645

Query: 481 GIAVKAADLDIASVMGMGFPPYR 503
           GIAVKAADLDIA +MGMGFPPYR
Sbjct: 646 GIAVKAADLDIAGIMGMGFPPYR 668

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  612 bits (1581), Expect = 0.0
 Identities = 162/510 (31%), Positives = 250/510 (49%), Gaps = 15/510 (2%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
            + + K  + E+A  +  VDAVV  ++L + A       +     + A   +  K+E L 
Sbjct: 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKA--KRQPKLEKLK 224

Query: 61  ----EAREIFKFARAQARKQA-PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRS 115
               E    F+ A+     QA PN   P+  I  ++     G    L+ EA  F KL ++
Sbjct: 225 LNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKT 284

Query: 116 ETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVIL 175
                L+ +F   +   K   V D     + VK+ A+LG G+MG GIA        P+++
Sbjct: 285 SASNCLIGLFLNDQELKKKAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILM 342

Query: 176 KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAII 235
           K++NE  +E G+      L  RV KG+MT  K  + ++ +   L Y  F +VD+V+EA++
Sbjct: 343 KDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVV 402

Query: 236 ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLL 295
           EN  +KQ + A++E +     ILASNTSTI ++L+ +     +  VG HFF+P H+MPL+
Sbjct: 403 ENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLV 462

Query: 296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLY 355
           E++R  ++S   +   +   KK+ K PIVV +C GF VNR+ FPY      LV  G D  
Sbjct: 463 EVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFV 522

Query: 356 LIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYK--SMIIPIMQEDKRAG 413
            ID+ + KFG PMGP  L D+VG            E FP+R        I  + E KR G
Sbjct: 523 RIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLG 582

Query: 414 ETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNE 473
           +   KGFY Y+  +K      V   + +               ++++DI+  +  P+  E
Sbjct: 583 QKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVYEQ----RDVTDEDIINWMMIPLCLE 638

Query: 474 ACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
             R   +GI   AA+ D+  V G+GFP +R
Sbjct: 639 TVRCLEDGIVETAAEADMGLVYGIGFPLFR 668

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  603 bits (1557), Expect = 0.0
 Identities = 155/522 (29%), Positives = 259/522 (49%), Gaps = 31/522 (5%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQL---VSTARQWALDILEHRRPWVATLYKTDKIE 57
           ++ + K +  +EA  LG++DAVV  + +   +  A++     +E RR +         + 
Sbjct: 170 LITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIIDKPIEPRRIF------NKPVP 223

Query: 58  PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
            L     +F  A A+ RKQ P +  P  C+  ++A V      G+++E + F  L  S  
Sbjct: 224 SLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQ 283

Query: 118 CKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVI 174
            K+L + FFA++  +K     G +    + + V  V +LG G MG GIA +       V+
Sbjct: 284 AKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVV 343

Query: 175 LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAI 234
             E + K L+A    +   L+    +     +        L      +    VD+V+EA+
Sbjct: 344 AVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAV 401

Query: 235 IENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPL 294
            E+++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSPAHVM L
Sbjct: 402 FEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRL 461

Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
           LE++ +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+E G+  
Sbjct: 462 LEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKP 521

Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVA-------IATGMQFIENFPER----TYKSMII 403
             +D  + +FG  MGPFR++DL G  V          TG       P R    +  S + 
Sbjct: 522 EDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLG 581

Query: 404 PIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKD 461
            ++ E  R G+ T KG+Y YD+   R   PDP +  F+ + R +  +        +S+++
Sbjct: 582 DMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTISKEE 637

Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
           I+E   + ++NEA R+  EG+A +   +D+  + G G+P ++
Sbjct: 638 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHK 679

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score =  506 bits (1305), Expect = e-177
 Identities = 126/405 (31%), Positives = 205/405 (50%), Gaps = 22/405 (5%)

Query: 115 SETCKSLVHIFFAQRGTSKVP---GVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNY 171
           S   K+L + FFA++  +K     G +    + + V  V +LG G MG GIA +      
Sbjct: 2   SGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGI 61

Query: 172 PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVI 231
            V+  E + K L+A    +   L+    +     +        L      +    VD+V+
Sbjct: 62  SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVV 119

Query: 232 EAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHV 291
           EA+ E+++LK+++FA+L   C P   L +NTS ++++ I   T     ++G HFFSPAHV
Sbjct: 120 EAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHV 179

Query: 292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERG 351
           M LLE++ +  +SP  I  ++ + KKI K  +VVGNC GF  NRM  PY    F L+E G
Sbjct: 180 MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEG 239

Query: 352 TDLYLIDRAITKFGMPMGPFRLADLVGFGVA-------IATGMQFIENFPER----TYKS 400
           +    +D  + +FG  MGPFR++DL G  V          TG       P R    +  S
Sbjct: 240 SKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYS 299

Query: 401 MIIPIMQEDKRAGETTRKGFYLYDE--RRKASPDPEVKKFIEKARSMSGVAIDPKFAKLS 458
            +  ++ E  R G+ T KG+Y YD+   R   PDP +  F+ + R +  +        +S
Sbjct: 300 PLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ----RTIS 355

Query: 459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
           +++I+E   + ++NEA R+  EG+A +   +D+  + G G+P ++
Sbjct: 356 KEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHK 400

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score =  485 bits (1251), Expect = e-169
 Identities = 116/409 (28%), Positives = 192/409 (46%), Gaps = 19/409 (4%)

Query: 101 GLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGL----APRRVKKVAILGGG 156
                     + L  +  +   ++  A     +     D G         V  VAI+GGG
Sbjct: 4   HHHHHHHSTGENLYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGG 63

Query: 157 LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT 216
            MG  +A    L+     L   NE+  +  +  +           ++  ++ EK  + L 
Sbjct: 64  TMGKAMAICFGLAGIETFLVVRNEQRCKQELEVM---YAREKSFKRLNDKRIEKINANLK 120

Query: 217 GVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS 276
              D+    + D+++E++IE++ LK+++FA+LE  C   CI  +NTS++DLN I      
Sbjct: 121 ITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRD 180

Query: 277 KDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM 336
              +VG HFF+PA+V+ L+EI+  + TS Q I       + IKK P++VGNC  F  NR+
Sbjct: 181 PSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRL 240

Query: 337 FFPYT-QAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPE 395
              Y  Q+  L+ E G   + ID+ IT FG  MGP  +AD+ GF V      +       
Sbjct: 241 LHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKEN------ 294

Query: 396 RTYKSMIIPIMQEDKRAGETTRKGFYLYDE-RRKASPDPEVKKFIEKARSMSGVAIDPKF 454
               + I   M   KR G  T KGFY YD+  ++   D E+++ I +    +   I    
Sbjct: 295 GLEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSNIQI-- 352

Query: 455 AKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYR 503
             ++++D++  + +P VNE  R   EG+    + +DI  ++G G+P + 
Sbjct: 353 --INDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHS 399

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  288 bits (738), Expect = 9e-92
 Identities = 117/427 (27%), Positives = 186/427 (43%), Gaps = 78/427 (18%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE 206
           V+ VA++G G MG+GIA       + V+L +++ + L   I  + A L SRV +GK+T E
Sbjct: 5   VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64

Query: 207 KFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID 266
             E+T+  L  V D  +    D+VIEA  E + +K+ +FA L + CPP  +L +NTS+I 
Sbjct: 65  TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124

Query: 267 LNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG 326
           +  I     + +R+ G HFF+PA VM L+E+V    T+ +V+  L ++     K P+   
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184

Query: 327 NCTGFAVNRMFFPY-TQAAFLLVERGTDLYLIDRAITKFGM--PMGPFRLADLVGFGV-- 381
           +  GF VNR+  PY ++A   L E+     +ID A+ + G   PMGP  L DL+G  V  
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAAL-RDGAGFPMGPLELTDLIGQDVNF 243

Query: 382 AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRK------ASPD 432
           A+   + F   + ER +      + QE    G   +K   G Y +   R+      A  D
Sbjct: 244 AVTCSV-FNAFWQERRFLPS--LVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSD 300

Query: 433 PEVKKFIEKA-----------------RSMSGVA---------IDPKFAKLSE------- 459
                 +EK                   +   +A         ID    K+         
Sbjct: 301 SFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVN 360

Query: 460 ----------------------KD----IVEMIFFPVVNEACRVFAEGIAVKAADLDIAS 493
                                  D    ++      ++NEA     +G+A    D+D A 
Sbjct: 361 PDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMIINEALDALQKGVA-SEQDIDTAM 419

Query: 494 VMGMGFP 500
            +G+ +P
Sbjct: 420 RLGVNYP 426

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  112 bits (281), Expect = 1e-26
 Identities = 29/218 (13%), Positives = 74/218 (33%), Gaps = 26/218 (11%)

Query: 217 GVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS 276
           GV D+ + ++  + +EA+  +     ++    +       +L   T       +  R   
Sbjct: 281 GVYDWRAEREAVVGLEAV-SDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLAR 339

Query: 277 KDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM 336
              ++            ++ I              +   ++  KT + + +  G  + R 
Sbjct: 340 PVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRT 393

Query: 337 FFPYTQAAFLLVERGT----DLYLIDRAITKFGM--PMGPFRLADLVGFGV--AIATGMQ 388
                  A   +++G     D   ID A+ + G+  P GP      +G+     +   +Q
Sbjct: 394 VAMIINEALDALQKGVASEQD---IDTAM-RLGVNYPYGPLAWGAQLGWQRILRLLENLQ 449

Query: 389 FIENFPERTYKSMIIPIMQEDK--RAGETTRKGFYLYD 424
              ++ E  Y+     ++++     +G  +  G + + 
Sbjct: 450 --HHYGEERYRPC--SLLRQRALLESGYESE-GHHHHH 482

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score =  264 bits (676), Expect = 7e-85
 Identities = 100/295 (33%), Positives = 144/295 (48%), Gaps = 18/295 (6%)

Query: 143 APRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG- 201
               VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK  
Sbjct: 11  KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKF 70

Query: 202 ----KMTQEKFEKTISLLTGVLDYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC 256
               K   E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H 
Sbjct: 71  AENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHT 130

Query: 257 ILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGK 316
           I ASNTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K
Sbjct: 131 IFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSK 190

Query: 317 KIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAITKFGM--PMGPFRL 373
            + K P+   +  GF VNR+  PY   A  L ERG      ID A+ K G   PMGPF L
Sbjct: 191 ALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAM-KLGAGYPMGPFEL 249

Query: 374 ADLVGFGV--AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLY 423
            D VG      I  G     +     ++    P + +     +  +K   GFY Y
Sbjct: 250 LDYVGLDTTKFIVDGW-HEMDAENPLHQP--SPSLNKLVAENKFGKKTGEGFYKY 301

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score =  239 bits (612), Expect = 2e-75
 Identities = 85/311 (27%), Positives = 138/311 (44%), Gaps = 31/311 (9%)

Query: 138 TDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSR 197
           +D         KV ++G GLMG GIA A+  S + V+L++V+EK LEA   ++   L S+
Sbjct: 3   SDKIHHHHHHMKVFVIGAGLMGRGIAIAI-ASKHEVVLQDVSEKALEAAREQIPEELLSK 61

Query: 198 VKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCI 257
                            +      E  KD D+V+EA+ E+++ K ++  ++E+    +  
Sbjct: 62  -----------------IEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAP 102

Query: 258 LASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK 317
           L SNTS I ++ I ER  S  R +G H+ +P HVMPL+EIV +  T  + +  +    ++
Sbjct: 103 LCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRE 162

Query: 318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAI-TKFGM---PMGPFRL 373
           + K  +V        VNR        A  ++E G     +DR      G+     GP   
Sbjct: 163 LGKEVVVCKG--QSLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGN 220

Query: 374 ADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK---GFYLYDERRKAS 430
            D +G  VA    +   + F +  +K      +QE  + GE   K   G Y Y  +    
Sbjct: 221 LDYIGLDVAYYASLYLYKRFGDEKFKP--PEWLQEKIKKGEVGVKAGKGIYEYGPKAYEE 278

Query: 431 PDPEVKKFIEK 441
               +KK +  
Sbjct: 279 RVERLKKLLRF 289

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 66.2 bits (161), Expect = 1e-11
 Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA-------TLYKT 53
                + V+GE A +  LVD VV PNQ     +  AL++                 + +T
Sbjct: 198 FCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERT 257

Query: 54  DKIEPLGEAREIFKFAR----AQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDF 109
           D+ + L          R    A    +AP    P     +V AG    P     +E +D 
Sbjct: 258 DREDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWP-LKFAREFDDA 316

Query: 110 QKLLRSETCKSLVHIFFAQRGTSKVPGVTDL 140
              +R+        +F  +     +      
Sbjct: 317 ILSMRTNELAVGTWVFRTEGDARHLLAADAS 347

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 19/114 (16%)

Query: 315 GKKIKKTPIVVGNCTGFAVN--RMFFPYTQAAFLLVERGT----DLYLIDRAITKFGM-- 366
           G    + P +  +     +N     F     A  LVE G     D   ID AI K G+  
Sbjct: 1   GHSKGR-PQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQD---IDTAI-KLGLNR 55

Query: 367 PMGPFRLADLVGFGV--AIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRK 418
           P GPF LA   G          +   + F ++ ++      ++E K        
Sbjct: 56  PFGPFELAKQFGAEQIAKRLEELA--KQFGKKIFEP--AKTLKEGKLEELLKAG 105

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 462 IVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP 500
                 F  +NEA ++   G+A    D+D A  +G+  P
Sbjct: 19  NPMDFTFVEINEAVKLVEMGVA-TPQDIDTAIKLGLNRP 56

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 60/440 (13%), Positives = 121/440 (27%), Gaps = 147/440 (33%)

Query: 58  PLGEAREIFKFARAQARKQAPN-LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
            +   +   +  R    K   N L   +V ++V  A             A +        
Sbjct: 226 RIHSIQA--ELRRLLKSKPYENCL---LVLLNVQNAKAW---------NAFNLS------ 265

Query: 117 TCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAI--LGGGLMGSGIATALILSNY--- 171
            CK L+        T++   VTD  L+      +++      L         +L  Y   
Sbjct: 266 -CKILL--------TTRFKQVTDF-LSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDC 313

Query: 172 -----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQ-EKFEKTISLLTGVLD----- 220
                P  +   N     + I     +  +     K    +K    I     VL+     
Sbjct: 314 RPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 221 --YESF----KDVD---MVIE----AIIENVSLKQQIFADLEKYCPPHCILA-----SNT 262
             ++             +++      +I++      +   L KY      L       +T
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYS-----LVEKQPKEST 425

Query: 263 STI-DL----------------NLIGE----RTYSKDRIVGAH----FFSPAHV---MPL 294
            +I  +                +++      +T+  D ++  +    F+S  H+   +  
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS--HIGHHLKN 483

Query: 295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDL 354
           +E          V +D   + +KI+       N +G  +N            L      L
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAW-NASGSILN-----------TL----QQL 527

Query: 355 YLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKS-----MIIPIMQED 409
                 I     P     +  +          + F+    E    S     + I +M ED
Sbjct: 528 KFYKPYICD-NDPKYERLVNAI----------LDFLPKIEENLICSKYTDLLRIALMAED 576

Query: 410 KRAGETTRKGFYLYDERRKA 429
           +           +++E  K 
Sbjct: 577 E----------AIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 81/602 (13%), Positives = 170/602 (28%), Gaps = 182/602 (30%)

Query: 2   MLTSKPVKGEEAHSLGLVDAVVAPNQLV--------STARQWALDILEHRRPWVATLYKT 53
           +L+ + +     H +   DAV    +L            +++  ++L     ++ +  KT
Sbjct: 45  ILSKEEID----HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 54  DKIEPLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLL 113
           ++ +P      ++     + R +  N        +V         R    +     ++ L
Sbjct: 101 EQRQPSMM-TRMY----IEQRDRLYNDNQVFAKYNV--------SR---LQPYLKLRQAL 144

Query: 114 RSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSG--IATALILSNY 171
                  L                       R  K V I G    GSG       +  +Y
Sbjct: 145 -----LEL-----------------------RPAKNVLIDGVL--GSGKTWVALDVCLSY 174

Query: 172 PVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMV 230
            V  K   + F L                  +   E  +K +  +    ++ S  D    
Sbjct: 175 KVQCKMDFKIFWLNLK----------NCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSN 222

Query: 231 IEAIIENVSLKQQIFADLEKYCPPHC--ILA--SNTSTIDLNLIGERTY--SKDRIVGAH 284
           I+  I ++  + +     + Y   +C  +L    N    +   +  +    ++ + V   
Sbjct: 223 IKLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TD 279

Query: 285 FFSPAHVMPL-LEIVRTNQTSPQVIVDLLD--IGKKIKKTPIVVGNCTG--FAVNRMFFP 339
           F S A    + L+      T  +V   LL   +  + +  P  V   T     ++ +   
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDCRPQDLPREV--LTTNPRRLS-II-- 333

Query: 340 YTQAAFLLVERGT-DLYL------IDRAITKFGMPMGP--FR--LADLVGF--GVAIATG 386
              A  +     T D +       +   I      + P  +R     L  F     I T 
Sbjct: 334 ---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 387 M------QFIENFPERTYKSMIIPIMQE-------DKRAGETTRKGFYLYD----ERRKA 429
           +        I++            ++ +       +K+  E+T     +       + K 
Sbjct: 391 LLSLIWFDVIKSDVMV--------VVNKLHKYSLVEKQPKEST---ISIPSIYLELKVKL 439

Query: 430 SPDPEV-KKFIEKAR--------SMSGVAIDPKFAK-----LSEKDIVEMI-FFPVVNEA 474
             +  + +  ++            +    +D  F       L   +  E +  F      
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR----- 494

Query: 475 CRVFAEGIAVKAADLDIASVMGMGFPPYRFV--TFIHRGFS-KSSSCFKNLLCYFDQGRN 531
             VF          LD           +RF+     H   +  +S    N L      + 
Sbjct: 495 -MVF----------LD-----------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532

Query: 532 HV 533
           ++
Sbjct: 533 YI 534

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
               +K   GE A + G +D +  P  ++S A + A +    
Sbjct: 159 AAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGL 200

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
            ++ ++    E A + G +D VV+  +L   A   A  + + 
Sbjct: 159 SVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKI 200

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
            +         EA  +G+VD VV   Q+ STA       +  
Sbjct: 163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAI 204

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           M +T + +  +EA  +GLV+ V    +     R++A  +   
Sbjct: 166 MNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANS 207

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
           ++LT      + A   GL +  +   +++  A + A DI  +  P
Sbjct: 162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAP 206

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           MMLTS P+ G EA   GLV+ V A    +    + A  I   
Sbjct: 162 MMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGK 203

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++ + +    EEA +LGL+D +VAP+ +  +A  WA   LE 
Sbjct: 179 LVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLEC 220

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRP 45
           ++L+ +    EEA  LGLV  VV P QL+  A ++A DI  +  P
Sbjct: 194 LLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSP 238

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
            ++T K   G++A  +GLV+  V   QL     + A ++LE 
Sbjct: 170 YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEK 211

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA 36
           +ML       E+   +GLVD VV   Q V+   Q  
Sbjct: 204 IMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI 239

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           M+ T +  +G+E    G+   VV+   +++ A+Q    I
Sbjct: 154 MIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKI 192

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++ T + +  +EA   GLV+ VV  + L   A + A  I  +
Sbjct: 166 LIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASN 207

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
            + T   +  +EA  LG+V+ VV+P  L+    + A  + E 
Sbjct: 159 WLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQ 200

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++L  + +  +E  +  LVD VV P++L +   +    +   
Sbjct: 347 VILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDGD 388

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 7/42 (16%), Positives = 14/42 (33%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           MMLT +     E    G    ++        A +    + ++
Sbjct: 170 MMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQN 211

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 9/42 (21%), Positives = 14/42 (33%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
            +LTS     + A   G V+  V   +L       A  +   
Sbjct: 168 AVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGF 209

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++ T + +  EE    G+V+ VV  ++L +  R  A +I + 
Sbjct: 179 ILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKM 220

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 7/42 (16%), Positives = 15/42 (35%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++ +++    +EA  +G V    A  Q  +     A      
Sbjct: 159 ILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATAL 200

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 8/39 (20%), Positives = 21/39 (53%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
            + T + +  ++A+ L +V  V+  ++L+  A + A  +
Sbjct: 181 FLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTL 219

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           +    +    E+ H +G V+AV    +L +   QWA +I   
Sbjct: 232 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAK 273

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT +PV   EA  +GLV+ VVA  Q    A   A +I   
Sbjct: 165 LILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAF 206

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT + +   EA   GLV  VV  + L++ AR  A  I + 
Sbjct: 179 LILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQM 220

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT+     E A S G ++  +  ++L     + A +I   
Sbjct: 171 VVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAAL 212

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           +MLT + V  +EA  +GLV   VA   L+         I   
Sbjct: 188 IMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGF 229

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT +P+    A   GL++ VV    ++  A   A  I  +
Sbjct: 165 LLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVN 206

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 36/116 (31%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLG 60
            MLT+      EAH +G+V  +V   + V TA   A  I       V             
Sbjct: 166 WMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGV------------- 212

Query: 61  EAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSE 116
                      QA  +                 V  G  A  ++     ++L  SE
Sbjct: 213 -----------QATLRN------------ARLAVREGDAAAEEQLVPTVRELFTSE 245

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           + LT +    E+A   G ++ +V   Q + TA + A  I  +
Sbjct: 157 LALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITAN 198

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           + LT + +  EEA  +GLV  +V    L+  A   A  I   
Sbjct: 164 LCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARM 205

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
           M+LT   +  ++A   GLV  +     LV  A Q A  I  + +  VA
Sbjct: 161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA 208

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           +    +    +EA  +GLV+ VV   ++     QW  +I++H
Sbjct: 171 IWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKH 212

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++   + +         LV+ VV  + L+  A   A  +  +
Sbjct: 157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASY 198

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           M LT   +  ++A   GLV  VVA + L++ AR+ A  I+ +
Sbjct: 156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGN 197

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           +    +    +EA  +G+V+ VV  ++L     QWA +IL  
Sbjct: 173 IWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSK 214

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           + LT   +  E AH+LG+V+ +  P   +  A   A  I  +
Sbjct: 166 LALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITAN 207

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT + +   EA  +GLV  VV   Q ++ A + A  I  +
Sbjct: 179 LLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAAN 220

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
            +LT      +EA  + L+  VV P + ++ A ++A  I
Sbjct: 169 YILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERI 207

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           +    +    ++A  +GLV+ VV    L     +W  ++L++
Sbjct: 187 IWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQN 228

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++ T+ P+  + A ++G+++ VV   +L     Q A  I E 
Sbjct: 160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEK 201

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
            +LT + + GEEA  +GLV   V  ++++ TA + A ++
Sbjct: 171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENL 209

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 12/42 (28%), Positives = 26/42 (61%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           ++LT + V+  EA +LGLV+ +  P + +  A+  A ++ ++
Sbjct: 157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKN 198

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
            +LT + +    A   G V+ V++  +L+  A + A  I
Sbjct: 172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGI 210

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 8/39 (20%), Positives = 13/39 (33%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           M++  K +   EA + GLV  V   +             
Sbjct: 185 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAF 223

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
            +L ++P+ GEEA  LGLV   V   ++   A + A  +
Sbjct: 168 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERL 206

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           M+LT +P+   EA+  GLV  VV     +  AR  A  I+ +
Sbjct: 166 MILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRN 207

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 12/39 (30%), Positives = 25/39 (64%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           ++++S+ +  EEA  +GLV  + +P +L+  AR+ A  +
Sbjct: 163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEIL 201

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 8/39 (20%), Positives = 14/39 (35%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           ++ T   + G +A   GL      P  L +   +    I
Sbjct: 218 LLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERI 256

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILE 41
           + ++++      A+SL LV   V  + L+    ++A  I  
Sbjct: 162 LFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISN 202

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           M LT      + A + GL++ ++    L +     A  +
Sbjct: 167 MALTGATYDADWALAAGLINRILPEAALATHVADLAGAL 205

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           M+L+ + +  +EA   GLV  V  P            ++
Sbjct: 165 MLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKEL 203

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           + +  + V  EEA +LGL   V+  +      +Q+A  +
Sbjct: 158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERL 196

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
           +++    V+  EA  +GL+  +    +    AR  A  + +   P +A
Sbjct: 178 LLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLAD--GPALA 223

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           M++  + +   EA + GLV  V               ++
Sbjct: 183 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKEL 221

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 5/36 (13%), Positives = 15/36 (41%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWA 36
           M +T++ +    A   G++  + + ++  S      
Sbjct: 156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDVL 191

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 25/39 (64%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           ++ +++ + G+EA ++GL+  V+  NQ    A + ALD+
Sbjct: 169 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDL 207

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 1   MMLT--SKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH 42
           M L    + +  + A+ LGL+  +V  ++L+  A + A  +  +
Sbjct: 173 MALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSN 216

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVA 48
           M++T + V  ++A  LGLV+ VVAP  L          I+   R  VA
Sbjct: 182 MLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVA 229

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDI 39
           +MLT++ +  EEA   GLV  V   ++    A + A ++
Sbjct: 164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVAREL 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	535
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	100.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	100.0
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	100.0
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	100.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	100.0
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	100.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	100.0
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.9
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.9
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.84
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.82
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.76
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.76
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.74
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.73
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.69
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.69
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.68
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.67
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.67
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.66
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.65
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.65
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.65
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.64
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.64
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.64
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.62
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.61
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.58
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.57
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.57
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.56
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.56
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.55
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.55
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.55
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.54
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.54
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.53
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.53
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.52
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	99.51
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.51
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	99.51
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.5
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.5
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.49
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.49
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	99.49
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.49
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.49
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.49
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.48
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.47
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.47
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.45
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.45
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	99.45
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	99.44
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.44
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.44
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.44
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	99.44
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	99.43
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.43
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.43
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	99.43
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	99.43
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.43
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	99.42
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	99.42
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.42
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	99.41
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	99.41
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	99.41
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	99.41
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	99.41
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	99.41
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	99.4
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.39
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.39
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	99.39
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	99.39
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.38
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.38
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	99.38
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	99.38
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	99.37
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.37
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	99.37
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	99.36
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.36
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.35
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	99.34
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	99.34
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	99.33
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	99.33
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	99.33
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.33
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	99.33
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.33
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.33
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	99.32
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	99.32
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	99.31
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	99.31
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.3
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	99.3
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	99.3
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	99.3
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	99.29
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	99.29
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	99.28
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	99.28
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	99.28
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	99.27
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.27
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.26
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.26
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.26
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	99.26
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	99.24
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	99.24
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.24
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.23
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	99.23
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	99.23
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	99.22
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.21
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	99.21
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	99.21
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.2
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	99.2
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	99.2
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	99.2
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	99.2
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.19
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	99.19
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.19
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.18
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.17
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	99.16
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.16
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	99.16
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	99.14
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	99.13
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	99.12
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	99.1
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.09
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	99.09
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.08
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.07
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.64
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	99.06
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.05
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.03
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	99.01
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	99.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	98.97
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.93
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.92
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	98.91
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.91
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	98.9
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.9
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.9
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	98.89
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.88
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.86
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.82
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.82
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.8
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	98.79
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	98.75
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.74
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	98.74
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.74
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.73
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.72
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.72
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.7
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	98.7
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.67
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	98.66
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	98.64
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.62
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.61
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.61
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.6
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.6
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.59
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.58
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.56
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.55
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.54
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.54
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.53
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.53
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.53
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	98.51
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.51
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.47
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.44
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.44
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.44
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.43
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.42
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.41
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.41
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.4
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.39
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	98.39
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.37
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.34
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.34
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.33
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.33
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.31
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.31
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.3
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.3
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.29
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.29
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.29
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.28
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.27
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.26
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.25
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.24
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.23
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.22
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.19
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.14
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.13
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.12
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.09
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.05
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.03
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.02
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.02
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	97.96
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.95
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.94
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	97.91
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.9
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.88
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.88
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.86
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.85
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.82
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.8
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	97.8
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.79
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.77
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.74
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.73
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.71
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.67
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.67
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.67
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.67
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.61
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.53
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.53
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.51
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.48
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.47
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.44
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.43
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.42
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.4
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.4
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.39
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.37
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.37
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.37
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.36
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.35
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.34
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.33
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.32
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.32
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.3
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.28
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.27
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.27
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.27
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.26
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.26
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.25
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.24
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.22
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.2
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.19
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.17
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.17
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.14
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.14
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	97.13
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.11
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.1
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.1
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.09
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.09
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.08
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.07
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.06
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.03
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.01
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.01
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.01
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.99
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.99
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.97
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.96
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.93
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.88
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.85
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.82
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.81
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.79
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.77
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.76
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.76
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.76
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.74
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.74
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.73
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.7
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.67
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.66
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.65
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.63
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.63
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.58
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.57
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.56
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.54
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	96.49
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.47
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.41
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.4
4had_A	350	Probable oxidoreductase protein; structural genomi	96.39
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.39
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.34
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.34
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.29
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.23
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	96.22
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.21
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.14
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.13
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.11
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.11
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.09
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.07
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.02
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.02
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.01
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.0
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.99
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	95.99
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.98
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.97
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.84
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	95.8
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.8
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.8
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.76
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.76
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.75
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.74
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.65
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.61
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.56
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.55
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.5
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.45
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.43
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.42
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.36
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	95.32
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.3
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	95.28
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	95.23
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	95.21
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	95.2
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.18
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	95.18
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.16
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	95.14
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.14
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.12
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.1
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	95.08
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	95.07
4hb9_A	412	Similarities with probable monooxygenase; flavin,	95.0
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	94.99
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.99
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	94.99
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	94.95
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	94.93
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	94.88
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	94.82
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.82
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	94.81
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.8
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	94.79
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	94.79
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	94.76
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.76
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	94.73
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	94.73
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.7
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.66
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.64
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	94.61
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	94.61
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	94.61
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.6
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.59
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.59
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	94.58
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	94.58
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	94.58
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	94.58
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.56
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	94.56
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	94.55
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.54
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.54
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.52
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.5
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	94.49
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.47
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	94.47
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	94.47
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	94.46
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	94.45
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	94.44
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	94.43
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.43
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	94.41
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	94.39
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.39
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.37
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	94.34
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.34
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	94.31
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	94.28
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	94.27
4h3v_A	390	Oxidoreductase domain protein; structural genomics	94.27
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	94.26
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.25
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	94.23
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.22
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.22
1xhl_A	297	Short-chain dehydrogenase/reductase family member	94.2
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.2
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	94.19
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	94.18
3cxt_A	291	Dehydrogenase with different specificities; rossma	94.17
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	94.12
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.12
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	94.11
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	94.08
1xkq_A	280	Short-chain reductase family member (5D234); parra	94.04
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	94.01
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.0
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	93.99
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	93.99
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	93.98
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.96
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.96
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	93.95
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	93.95
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	93.93
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	93.91
1lnq_A	336	MTHK channels, potassium channel related protein;	93.9
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	93.84
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	93.84
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	93.82
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	93.8
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	93.77
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	93.7
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	93.7
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	93.7
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	93.68
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.66
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	93.61
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	93.6
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	93.57
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	93.51
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.49
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	93.47

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=6e-95  Score=799.52  Aligned_cols=519  Identities=29%  Similarity=0.480  Sum_probs=459.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|+|++ ++++|.++|++++++  |+..+................+..+.++.+++.+++
T Consensus       170 l~ltG~~i~a~eA~~~GLv~~vv~~d-~~~~A~~~A~~ia~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  246 (742)
T 3zwc_A          170 LITSGKYLSADEALRLGILDAVVKSD-PVEEAIKFAQKIIDK--PIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGV  246 (742)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEESSC-HHHHHHHHHHHHTTS--CSGGGCGGGSCCCCCTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHcCCchhHHHHHHcCCccEecCch-hhHHHHHHHHHHhcC--CchhhhhhcccccccchhhhhHHHHHHHHhhhccch
Confidence            57899999999999999999999875 568999999999996  333333333333333233445666778888889999


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCC---CCCCCCCCcceEEEEeCCh
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVT---DLGLAPRRVKKVAILGGGL  157 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~---~~~~~~~~~~kV~vIG~G~  157 (535)
                      +|+.+++++++.+...+++++++.|++.|.+++.|+++++++++|+++|+++|.+...   ..+..+++|+||+|||+|.
T Consensus       247 ~A~~~~~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGaG~  326 (742)
T 3zwc_A          247 LAPETCVRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGT  326 (742)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECCSH
T ss_pred             hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcccH
Confidence            9999999999999999999999999999999999999999999999999998865432   2344567899999999999


Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCC
Q 009395          158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN  237 (535)
Q Consensus       158 mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~  237 (535)
                      ||++||..++.+|++|+++|++++.++.+.+.+...+++.+.++..+..  .....+++.+++++++++||+|||||||+
T Consensus       327 MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aDlVIEAV~E~  404 (742)
T 3zwc_A          327 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAVFED  404 (742)
T ss_dssp             HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEEEESCGGGGGSCSEEEECCCSC
T ss_pred             HHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch--hhhhhhhcccCcHHHHhhCCEEEEecccc
Confidence            9999999999999999999999999999999999888887776654422  23346778888999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHh
Q 009395          238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK  317 (535)
Q Consensus       238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~~  317 (535)
                      +++|+++|+++++++++++|++||||++++++|++.+.+|+||+|+|||||++.++||||++++.|++++++.+.+|.+.
T Consensus       405 l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~  484 (742)
T 3zwc_A          405 MNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKK  484 (742)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCC-
Q 009395          318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER-  396 (535)
Q Consensus       318 lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~-  396 (535)
                      +||.||+++|+|||++||++.++++||++++++|+++++||.+++++|||||||+++|.+|+|+++++++.++...++. 
T Consensus       485 lgK~pV~vkd~pGFi~NRi~~~~~~ea~~l~~eG~~~~~id~a~~~~G~pmGPf~l~D~vGlDv~~~v~~~~~~~~~~~~  564 (742)
T 3zwc_A          485 IGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLP  564 (742)
T ss_dssp             TTCEEEECCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSTTSC
T ss_pred             hCCCCcccCCCCCccHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCChHHHHHHhCHHHHHHHHHHHHhhCcccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998876554331 


Q ss_pred             ----------CccCccHHHHHHCCCCCccCCceeeeecCCC--CCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHH
Q 009395          397 ----------TYKSMIIPIMQEDKRAGETTRKGFYLYDERR--KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVE  464 (535)
Q Consensus       397 ----------~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  464 (535)
                                ..+++++++|+++|++|+|||+|||+|++++  +..+|+++..++...+...++..+    .+++++|.+
T Consensus       565 ~~~~~~~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ei~~  640 (742)
T 3zwc_A          565 PGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQR----TISKEEILE  640 (742)
T ss_dssp             TTCCTTEETTEECCCHHHHHHTTTCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCCC----CCCHHHHHH
T ss_pred             ccchhhhcccccccHHHHHHHHCCCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCcC----CCCHHHHHH
Confidence                      1246799999999999999999999998643  357899998888776655444433    678999999


Q ss_pred             HHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhh---cCcchHHHHHHHHHhHhcC
Q 009395          465 MIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIH---RGFSKSSSCFKNLLCYFDQ  528 (535)
Q Consensus       465 r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~---~G~~~~~~~~~~~~~~~~~  528 (535)
                      |++.+++||+++|++|||+.+++|||.+|++|+|||+|+||||.+   +|++.++..++.++..+++
T Consensus       641 R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~  707 (742)
T 3zwc_A          641 RCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPD  707 (742)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999988888865   8999999999999988876

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=7.4e-88  Score=747.89  Aligned_cols=525  Identities=76%  Similarity=1.191  Sum_probs=441.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcc-hhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWV-ATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (535)
                      |++||++++|+||+++||||+|||+++++++|.+++++++....|+. ...+. ++..........+..+++.+.+++++
T Consensus       166 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~g  244 (725)
T 2wtb_A          166 MILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKT-DKLPPLGEAREILTFAKAQTLKRAPN  244 (725)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGCC-TTSCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhhc-cccCccchHHHHHHHHHHHHHHhccC
Confidence            57899999999999999999999999999999999999988632442 21110 01112222334778889999999888


Q ss_pred             CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeCChhh
Q 009395           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMG  159 (535)
Q Consensus        80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~G~mG  159 (535)
                      |||+..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.++..+.+..+++++||+|||+|.||
T Consensus       245 ~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG  324 (725)
T 2wtb_A          245 MKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGGGLMG  324 (725)
T ss_dssp             CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEEECCSHHH
T ss_pred             CcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEEEcCCHhh
Confidence            99999999999999999999999999999999999999999999999999999977632113345678999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCChH
Q 009395          160 SGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVS  239 (535)
Q Consensus       160 ~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~~~  239 (535)
                      ++||..++++|++|++||++++.++.+.+.+++.+++.+++|.+++.+.+...++++.+++++.+++||+||+|||++.+
T Consensus       325 ~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIeaVpe~~~  404 (725)
T 2wtb_A          325 SGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENIS  404 (725)
T ss_dssp             HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTTCSEEEECCCSCHH
T ss_pred             HHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCCCCEEEEcCcCCHH
Confidence            99999999999999999999999999888899999999999988877777788899988899889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHhcC
Q 009395          240 LKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIK  319 (535)
Q Consensus       240 ~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~~lG  319 (535)
                      +|+++++++.+++++++|++||||+++++++++.+.+|++++|+|||+|++.++++|+++++.|++++++.+.++++.+|
T Consensus       405 vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lG  484 (725)
T 2wtb_A          405 LKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIK  484 (725)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             CceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCC-Cc
Q 009395          320 KTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER-TY  398 (535)
Q Consensus       320 k~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~-~~  398 (535)
                      +.+++++|.+||++||++.++++|++.++++|+++++||+++.++|+|||||+++|.+|+|+++++++.+++.++++ +.
T Consensus       485 k~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~e~id~~~~~~g~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~  564 (725)
T 2wtb_A          485 KTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYK  564 (725)
T ss_dssp             CEEEEEESSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHSGGGCCC
T ss_pred             CEEEEECCCccHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhchHHHHHHHHHHHHhcCCccCC
Confidence            99999999999999999999999999999999999999999988999999999999999999999999999998876 55


Q ss_pred             cCccHHHHHHCCCCCccCCceeeeecCCCCCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHHHHHHHHHHHH
Q 009395          399 KSMIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVF  478 (535)
Q Consensus       399 ~~~~l~~~~~~G~~G~k~g~GFY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~~  478 (535)
                      | +++++|+++|++|+|||+|||+|++.++..+|+++..|+...+...++.+..+...++.++|++|++.+++||+++|+
T Consensus       565 ~-~~l~~~v~~g~lG~k~g~GfY~y~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~nea~~~l  643 (725)
T 2wtb_A          565 S-MIIPLMQEDKRAGEATRKGFYLYDDKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVF  643 (725)
T ss_dssp             C-THHHHHHTTC---------------------CCCCCTTSHHHHHHTCCSCCCTTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-HHHHHHHHCCCceecCCceeEeCCCCccCCCCHHHHHHHHhhhhhccccchhhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            6 899999999999999999999996322334677776665533221111001111246789999999999999999999


Q ss_pred             hcCcCCChhHHHHHHHhccCCCCCcchhhhh---cCcchHHHHHHHHHhHhc
Q 009395          479 AEGIAVKAADLDIASVMGMGFPPYRFVTFIH---RGFSKSSSCFKNLLCYFD  527 (535)
Q Consensus       479 ~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~---~G~~~~~~~~~~~~~~~~  527 (535)
                      +|||+.+++|||.+|++|+|||+|+||||.+   +|++.++..++.++..++
T Consensus       644 ~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g  695 (725)
T 2wtb_A          644 AEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYG  695 (725)
T ss_dssp             HTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             hcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999988888865   899999999999987776

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=6e-87  Score=740.34  Aligned_cols=516  Identities=31%  Similarity=0.512  Sum_probs=456.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhccc-CCC-CCchHHHHHHHHHHHHHHHhCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKT-DKI-EPLGEAREIFKFARAQARKQAP   78 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~   78 (535)
                      |++||++++|+||+++||||+|||+++++++|.+++++++.+..||..+.... ... .+......+++.+++++.++++
T Consensus       167 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~~  246 (715)
T 1wdk_A          167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAG  246 (715)
T ss_dssp             HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhcccccCccccCchhHHHHHHHHHHHHHHhcc
Confidence            57899999999999999999999999999999999999988532443222110 000 0100112257777888888765


Q ss_pred             -CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeCCh
Q 009395           79 -NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL  157 (535)
Q Consensus        79 -~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~G~  157 (535)
                       +|||+..+|++++.+...+++++++.|.+.|..++.|+++++++++|++||+++|.++... + .+++++||+|||+|.
T Consensus       247 g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~-~-~~~~i~kV~VIGaG~  324 (715)
T 1wdk_A          247 PNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVYD-K-IAKDVKQAAVLGAGI  324 (715)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCSSEEEECCHH
T ss_pred             cCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhccccCCC-C-ccccCCEEEEECCCh
Confidence             6999999999999999999999999999999999999999999999999999988654211 2 346789999999999


Q ss_pred             hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCC
Q 009395          158 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIEN  237 (535)
Q Consensus       158 mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~  237 (535)
                      ||++||..++++|++|++||++++.++.+...+++.+++.+++|.+++.+.+..+++++.+++++.+++||+||+||||+
T Consensus       325 MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIeaV~e~  404 (715)
T 1wdk_A          325 MGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVEN  404 (715)
T ss_dssp             HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGCSEEEECCCSC
T ss_pred             hhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHCCCCEEEEcCCCC
Confidence            99999999999999999999999999998888999999999999999888888888898888888899999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHh
Q 009395          238 VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKK  317 (535)
Q Consensus       238 ~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~~  317 (535)
                      .++|+++++++.+++++++|++||||+++++++++.+.+|++++|+|||+|++.++++|+++++.|++++++.+.++++.
T Consensus       405 ~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~  484 (715)
T 1wdk_A          405 PKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKK  484 (715)
T ss_dssp             HHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             cCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCCC
Q 009395          318 IKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERT  397 (535)
Q Consensus       318 lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~  397 (535)
                      +|+.+++++|.+||++||++.++++|++.++++|+++++||.++.++|+|||||+++|.+|+|+++++++.+++.+++++
T Consensus       485 lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~~~id~~~~~~G~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~~~  564 (715)
T 1wdk_A          485 MGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRM  564 (715)
T ss_dssp             TTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHH
T ss_pred             hCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhhHHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999999888776


Q ss_pred             ccC--ccHHHHHHCCCCCccCCceeeeec-C--CC-CCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHHHHH
Q 009395          398 YKS--MIIPIMQEDKRAGETTRKGFYLYD-E--RR-KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVV  471 (535)
Q Consensus       398 ~~~--~~l~~~~~~G~~G~k~g~GFY~y~-~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~  471 (535)
                      .|+  +++++|+++|++|+|||+|||+|+ +  ++ +..+|+++..|+...+.     +   ...++.++|++|++.+++
T Consensus       565 ~~~~~~~l~~~v~~g~lG~k~g~GfY~y~~~~~g~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~i~~r~l~~~~  636 (715)
T 1wdk_A          565 KDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY-----E---QRDVTDEDIINWMMIPLC  636 (715)
T ss_dssp             CCSSCCHHHHHHHTTCCBTTTTBSSSEEC-------CEECCTHHHHHHGGGCC-----C---CCCCCHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHhCchhhhcCCcEEEecccCcCCCCcCCCCHHHHHHHhhhcc-----C---ccCCCHHHHHHHHHHHHH
Confidence            777  899999999999999999999996 3  33 34689998888753221     1   123678999999999999


Q ss_pred             HHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhh---cCcchHHHHHHHHHhHhc
Q 009395          472 NEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIH---RGFSKSSSCFKNLLCYFD  527 (535)
Q Consensus       472 ~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~---~G~~~~~~~~~~~~~~~~  527 (535)
                      ||+++|++|||+.+++|||.+|++|+|||+|+||||.+   +|++.++..++.+ ..++
T Consensus       637 nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g  694 (715)
T 1wdk_A          637 LETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELG  694 (715)
T ss_dssp             HHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGC
T ss_pred             HHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcC
Confidence            99999999999999999999999999999988888865   8999999999998 6665

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=100.00  E-value=3.2e-76  Score=616.17  Aligned_cols=394  Identities=29%  Similarity=0.480  Sum_probs=353.3

Q ss_pred             HHhhcccCCCCCCCCC----CCCCCCCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHH
Q 009395          124 IFFAQRGTSKVPGVTD----LGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVK  199 (535)
Q Consensus       124 aF~~kr~~~~~~~~~~----~~~~~~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~  199 (535)
                      +|.++|..+++..+..    ....+++++||+|||+|.||++||..++++|++|++||++++   ++...+++.+++.++
T Consensus        27 ~~~a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~  103 (460)
T 3k6j_A           27 LMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKS  103 (460)
T ss_dssp             HHHTTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHH
T ss_pred             HHhHHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHH
Confidence            4557788877765422    123457789999999999999999999999999999999998   455668888999999


Q ss_pred             cCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCc
Q 009395          200 KGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDR  279 (535)
Q Consensus       200 ~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r  279 (535)
                      +|.++.++.+..+++++++++++++++||+|||||||++++|+++|+++.+.+++++||+||||+++++++++.+.+|++
T Consensus       104 ~G~l~~~~~~~~~~~i~~t~dl~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r  183 (460)
T 3k6j_A          104 FKRLNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSN  183 (460)
T ss_dssp             TTSCCHHHHHHHHTTEEEESCGGGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGG
T ss_pred             cCCCCHHHHHHHhcceEEeCCHHHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcc
Confidence            99999988888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHH-HcCCCHHHHH
Q 009395          280 IVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLV-ERGTDLYLID  358 (535)
Q Consensus       280 ~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~-~~G~~~~~ID  358 (535)
                      |+|+|||+|++.++++|++++..|++++++.+.++++.+|+.+++++|.|||++||++.++++||+.++ ++|+++++||
T Consensus       184 ~iG~HffnPv~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID  263 (460)
T 3k6j_A          184 LVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQID  263 (460)
T ss_dssp             EEEEECCSSTTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             eEEEEecchhhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 6899999999


Q ss_pred             HHHHhcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCCCccCccHHHHHHCCCCCccCCceeeeecCCCC-CCCChhHHH
Q 009395          359 RAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFYLYDERRK-ASPDPEVKK  437 (535)
Q Consensus       359 ~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~~-~~~~~~~~~  437 (535)
                      ++++++|+|||||+++|.+|+|+++++++.+    .  ..+++++++|+++|++|+|||+|||+|+++++ ...++++..
T Consensus       264 ~a~~~~G~pmGPf~l~D~vGlD~~~~i~~~~----~--~~~~~~l~~~v~~G~lG~KtG~GFY~y~~~~~~~~~~~~~~~  337 (460)
T 3k6j_A          264 KIITNFGFLMGPMTVADMNGFDVMEKLKKEN----G--LEPNPIEKEMWRLKRYGRKTNKGFYKYDDKTQRKENDTEMEQ  337 (460)
T ss_dssp             HHHHHHTBSSCHHHHHHHHCTHHHHHHHHHS----C--CCCCHHHHHHHHTTCCBGGGTBSSSEECTTTCCEECCHHHHH
T ss_pred             HHHHHcCCCcCHHHHHHHhchHHHHHHHHHh----c--cCchHHHHHHHHCCCCeeecCCEEEECCCCCCCCCCCHHHHH
Confidence            9999999999999999999999999988764    2  23558999999999999999999999987553 578999888


Q ss_pred             HHHHHhhccCCcCCcccccCCHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhh---cCcch
Q 009395          438 FIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIH---RGFSK  514 (535)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~---~G~~~  514 (535)
                      ++...+...++.++    .+++++|.+|++.+++||+++|++|||+.+++|||.+|++|+|||+|+||||.+   +|++.
T Consensus       338 ~~~~~~~~~~~~~~----~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~  413 (460)
T 3k6j_A          338 IIRRVSQNAKSNIQ----IINDQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDK  413 (460)
T ss_dssp             HHHHC---CCCSSC----CCSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHH
T ss_pred             HHHHHHHhcCCCcc----cCChHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHH
Confidence            87654433333332    578899999999999999999999999988999999999999999999998865   89999


Q ss_pred             HHHHHHHHHhHhcCCC
Q 009395          515 SSSCFKNLLCYFDQGR  530 (535)
Q Consensus       515 ~~~~~~~~~~~~~~~~  530 (535)
                      ++..++.|...+++.+
T Consensus       414 ~~~~l~~l~~~~g~~~  429 (460)
T 3k6j_A          414 IANMLVHWSSLEPKES  429 (460)
T ss_dssp             HHHHHHHHHHHCTTCG
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            9999999998888664

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=100.00  E-value=1.4e-71  Score=590.12  Aligned_cols=382  Identities=30%  Similarity=0.466  Sum_probs=338.7

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +++||+|||+|+||++||..++++|++|++||++++.++.+.+.+.+.+++.+++|.++..+.+..+++++.++++++++
T Consensus         4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   83 (483)
T 3mog_A            4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHALA   83 (483)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGGG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHhc
Confidence            47899999999999999999999999999999999999999999999999999999999988888899999999998899


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~  305 (535)
                      +||+||+|||++.++|+++++++.+.+++++|++||||+++++++++.+.+|.+++|+|||+|++.++++|++++..|++
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts~  163 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAA  163 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCCH
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHH
Q 009395          306 QVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAI  383 (535)
Q Consensus       306 e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~  383 (535)
                      ++++.+.++++.+|+.+++++|.|||++||++.++++||+.++++|. |+++||++++ ++|||||||+++|.+|+|+.+
T Consensus       164 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~~  243 (483)
T 3mog_A          164 EVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNF  243 (483)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHHH
Confidence            99999999999999999999999999999999999999999999987 8999999999 899999999999999999999


Q ss_pred             HHHHHHHHhC-CCC-CccCccHHHHHHCCCCCccCCceeeeecCCCCCCC-----ChhHHHH------------------
Q 009395          384 ATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYDERRKASP-----DPEVKKF------------------  438 (535)
Q Consensus       384 ~~~~~l~~~~-~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y~~~~~~~~-----~~~~~~~------------------  438 (535)
                      ++++.+++.+ +++ +.|++++++|+++|++|+|||+|||+|+++++...     +++...+                  
T Consensus       244 ~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  323 (483)
T 3mog_A          244 AVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWRAEREAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLLI  323 (483)
T ss_dssp             HHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTTSCCCCCCCCCCCCGGGCCSCEEECSTTEEEETTEEEE
T ss_pred             HHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECCCCCCCcccccCCCchhHHHHHHHHhcccccccchhhc
Confidence            9999999886 343 45778899999999999999999999976321111     1211000                  


Q ss_pred             -----------------------------------------HHH---HhhccCCcCCcccccCCHHHHHHHHHHHHHHHH
Q 009395          439 -----------------------------------------IEK---ARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEA  474 (535)
Q Consensus       439 -----------------------------------------~~~---~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea  474 (535)
                                                               ++.   .-...+.++.  ...-+..+|+||++.+|+|||
T Consensus       324 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~--~~~d~~g~i~~Rll~~~~nEA  401 (483)
T 3mog_A          324 ETQGETAQALAIRLARPVVVIDKMAGKVVTIAAAAVNPDSATRKAIYYLQQQGKTVL--QIADYPGMLIWRTVAMIINEA  401 (483)
T ss_dssp             ECSSSCHHHHHHHHTSCEEEEECCSSSEEEEEECTTSCHHHHHHHHHHHHTTTCEEE--ECCCCTTTTHHHHHHHHHHHH
T ss_pred             ccCCcchHHHhhccccceeeeeccccceEEEecCCCCCHHHHHHHHHHHHHcCCcee--eecccccHHHHHHHHHHHHHH
Confidence                                                     000   0000011110  001134689999999999999


Q ss_pred             HHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395          475 CRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQGR  530 (535)
Q Consensus       475 ~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~  530 (535)
                      ++|++|||+ +++|||.+|++|+|||+||+.++|.+|+|+++.+++.|+..++++|
T Consensus       402 ~~~l~eGva-s~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~  456 (483)
T 3mog_A          402 LDALQKGVA-SEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEER  456 (483)
T ss_dssp             HHHHHTTSS-CHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHcCCC-CHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCC
Confidence            999999998 9999999999999999999999999999999999999999988754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=100.00  E-value=1.4e-70  Score=582.51  Aligned_cols=409  Identities=30%  Similarity=0.497  Sum_probs=348.6

Q ss_pred             cCHHHHHHHHHHhhcccCCCCCCC---CCCCCCCCCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          114 RSETCKSLVHIFFAQRGTSKVPGV---TDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       114 ~s~e~~~~i~aF~~kr~~~~~~~~---~~~~~~~~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      .|++++++++.|+.+|..+|.+.+   ...+..+++++||+|||+|.||++||..++++|++|++||++++.++.+.+.+
T Consensus         1 ~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i   80 (463)
T 1zcj_A            1 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKII   80 (463)
T ss_dssp             -CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence            489999999999999999985431   11233456789999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHH
Q 009395          191 RANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI  270 (535)
Q Consensus       191 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  270 (535)
                      ++.+...+++|.++..+.+....  ..+++++.+++||+||+|||++.++|+++++++.+++++++||+||||+++++++
T Consensus        81 ~~~l~~~~~~g~~~~~~~~~~~~--~i~~~~~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~l  158 (463)
T 1zcj_A           81 TFTLEKEASRAHQNGQASAKPKL--RFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI  158 (463)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCE--EEESCGGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHh--hhcCCHHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHH
Confidence            77777776665433221111112  2356777899999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHc
Q 009395          271 GERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVER  350 (535)
Q Consensus       271 ~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~  350 (535)
                      ++.+.+|.+++|+|||+|++.++++|+++++.|++++++.+.++++.+|+.++++++.+||++||++.++++|+++++++
T Consensus       159 a~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~  238 (463)
T 1zcj_A          159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEE  238 (463)
T ss_dssp             HTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHc
Confidence            99888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcCCChhHHHHHHHhchHHHHHHHHHHH---HhC-------CCC-CccCccHHHHHHCCCCCccCCce
Q 009395          351 GTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFI---ENF-------PER-TYKSMIIPIMQEDKRAGETTRKG  419 (535)
Q Consensus       351 G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~---~~~-------~~~-~~~~~~l~~~~~~G~~G~k~g~G  419 (535)
                      |+++++||.+++++|+|||||+++|.+|+|+.+++++.+.   +.+       .+. ..+++++++|+++|++|+|||+|
T Consensus       239 G~~~~~id~~~~~~g~p~Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG~k~g~G  318 (463)
T 1zcj_A          239 GSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKG  318 (463)
T ss_dssp             TCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCBGGGTBS
T ss_pred             CCCHHHHHHHHHHcCCCCcHHHHHHHcchHHHHHHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCeeecCCe
Confidence            9999999999999999999999999999999999998762   211       111 12368999999999999999999


Q ss_pred             eeeecC-CC-CCCCChhHHHHHHHHhhccCCcCCcccccCCHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhcc
Q 009395          420 FYLYDE-RR-KASPDPEVKKFIEKARSMSGVAIDPKFAKLSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGM  497 (535)
Q Consensus       420 FY~y~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~  497 (535)
                      ||+|++ ++ ....++++.+++.......+..+.    .++..+|+||++.+++|||++|++|||+++++|||.+|++|+
T Consensus       319 fy~y~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~  394 (463)
T 1zcj_A          319 WYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQR----TISKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGY  394 (463)
T ss_dssp             SEEESSTTCSCEEECHHHHHHHHHHHHHTTCCCC----CCCHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHS
T ss_pred             eccCCCCCCCCCCCCHHHHHHHHHHHHHcCCCcc----cCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence            999963 32 234688888877654433232222    356789999999999999999999999977999999999999


Q ss_pred             CCCCCcchhh---hhcCcchHHHHHHHHHhHhcC
Q 009395          498 GFPPYRFVTF---IHRGFSKSSSCFKNLLCYFDQ  528 (535)
Q Consensus       498 g~~~~~~g~~---~~~G~~~~~~~~~~~~~~~~~  528 (535)
                      |||+|++|||   |.+|+|+.+..++.|+..+++
T Consensus       395 G~p~~~gGP~~~~D~~Gl~~~~~~~~~l~~~~g~  428 (463)
T 1zcj_A          395 GWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPD  428 (463)
T ss_dssp             CCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTT
T ss_pred             CCCCCCcChHHHHHHhCHHHHHHHHHHHHHHhCC
Confidence            9999555555   669999999999999988877

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=100.00  E-value=6.2e-55  Score=436.04  Aligned_cols=268  Identities=22%  Similarity=0.340  Sum_probs=237.7

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcccccccCcc-c
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGVLDYE-S  223 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~  223 (535)
                      .+.||+|||+|+||++||..++.+|++|+++|++++.++++.+++++.+.+.+++|.++.. ..+..+++++.+++++ +
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            4679999999999999999999999999999999999999999999999999999988643 4566778899888985 5


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t  303 (535)
                      +++||+|||||||++++|+++|++|++++++++|++||||+++++++++.+.+|+||+|+|||||++.++|||+++++.|
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~T  164 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPET  164 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTC
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCceEEe-CCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCC---hhHHHHHHHh
Q 009395          304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMP---MGPFRLADLV  377 (535)
Q Consensus       304 s~e~~~~~~~l~~~lGk~~i~v-~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p---~GPf~~~D~~  377 (535)
                      ++++++.+.+|++.+|+.|+++ +|+|||++||++.++++||++++++|+ |+++||.+|+ |+|+|   ||||+++|.+
T Consensus       165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~  244 (319)
T 3ado_A          165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN  244 (319)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhc
Confidence            9999999999999999999866 799999999999999999999999997 9999999999 88876   9999999999


Q ss_pred             chHHHHHHHHHHHHhCCCCCccCccHHHHH-HCCCCCccCCceeeeec
Q 009395          378 GFGVAIATGMQFIENFPERTYKSMIIPIMQ-EDKRAGETTRKGFYLYD  424 (535)
Q Consensus       378 Gld~~~~~~~~l~~~~~~~~~~~~~l~~~~-~~G~~G~k~g~GFY~y~  424 (535)
                      |++.....- ++.          +.++.+. +.|+.+.++|+++|+|.
T Consensus       245 G~~~~~~~~-~~~----------~~~~~~~~~~~~~p~~~~~~~~k~~  281 (319)
T 3ado_A          245 AEGMLSYCD-RYS----------EGMKRVLKSFGSIPEFSGATVEKVN  281 (319)
T ss_dssp             TTSHHHHHH-HHH----------HHHHHHHHTCCCCCCCCHHHHHHHH
T ss_pred             CccHHHHHH-Hhh----------HhHHHHHHHcCcccccchHHHHHHH
Confidence            998765432 221          1222222 33666666666666654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=100.00  E-value=1.3e-54  Score=430.44  Aligned_cols=257  Identities=30%  Similarity=0.450  Sum_probs=238.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      -+||+|||+|+||++||..++ +|++|++||++++.++++.+.             +    .+..+++++.+++++++++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~-------------l----~~~~~~~i~~~~~~~~~~~   73 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ-------------I----PEELLSKIEFTTTLEKVKD   73 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-------------S----CGGGGGGEEEESSCTTGGG
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH-------------H----HHHHhCCeEEeCCHHHHcC
Confidence            478999999999999999999 999999999999998876543             0    1233456777778877999


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHH
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQ  306 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e  306 (535)
                      ||+||||+||+.++|+.+|+++.+.  +++|++|||||++++++++.+.+|.+++|+|||+|++.++++|+++++.|+++
T Consensus        74 aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~  151 (293)
T 1zej_A           74 CDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSK  151 (293)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHH
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHH
Confidence            9999999999999999999999887  89999999999999999998888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHH-hcCCCh---hHHHHHHHhchHHH
Q 009395          307 VIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAIT-KFGMPM---GPFRLADLVGFGVA  382 (535)
Q Consensus       307 ~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~  382 (535)
                      +++.++++++.+|+.+++++|.  |++||++.++++||+.++++|+++++||++++ ++|+|+   |||+++|.+|+|++
T Consensus       152 ~~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~  229 (293)
T 1zej_A          152 TVAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVA  229 (293)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHH
Confidence            9999999999999999999986  99999999999999999999999999999999 999999   99999999999999


Q ss_pred             HHHHHHHHHhCCC-CCccCccHHHHHHCCCCCccCCceeeeecC
Q 009395          383 IATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLYDE  425 (535)
Q Consensus       383 ~~~~~~l~~~~~~-~~~~~~~l~~~~~~G~~G~k~g~GFY~y~~  425 (535)
                      +++++.+++.+++ ++.|++++++|+++|++|+|||+|||+|++
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~  273 (293)
T 1zej_A          230 YYASLYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP  273 (293)
T ss_dssp             HHHHHHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred             HHHHHHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence            9999999999888 455789999999999999999999999964

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=100.00  E-value=3.6e-54  Score=429.45  Aligned_cols=275  Identities=27%  Similarity=0.413  Sum_probs=254.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHhhhcccccccCcc-c
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKG-KMTQEKFEKTISLLTGVLDYE-S  223 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~-~  223 (535)
                      .++||+|||+|.||++||..++++|++|++||++++.++.+.+.+.+.+...++.| .++..+.+....++..+++++ .
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            47899999999999999999999999999999999999999998988888888887 777777777777888888885 4


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQT  303 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~t  303 (535)
                      +++||+||+|+|+++++++.+++++.+.+++++|++||+|+++++++++.+.++.+++|+|||+|++.+++++++++..+
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t  162 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKT  162 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTS
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCC
Confidence            89999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCceEEe-CCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchH
Q 009395          304 SPQVIVDLLDIGKKIKKTPIVV-GNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFG  380 (535)
Q Consensus       304 s~e~~~~~~~l~~~lGk~~i~v-~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld  380 (535)
                      ++++++.++++++.+|+.++++ ++.|||++||++.++++||++++++|. +|++||++++ ++|+|||||+++|.+|||
T Consensus       163 ~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld  242 (283)
T 4e12_A          163 DPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLT  242 (283)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHH
T ss_pred             CHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHH
Confidence            9999999999999999999999 689999999999999999999999986 9999999999 999999999999999999


Q ss_pred             HHHHHHHHHHHhCCC-CCccCccHHHHHHCCCCCccCCceeeee
Q 009395          381 VAIATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTRKGFYLY  423 (535)
Q Consensus       381 ~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~G~~G~k~g~GFY~y  423 (535)
                      ++++++++   ..++ ++.|++++++|+++|++|+|||+|||+|
T Consensus       243 ~~~~~~~~---~~~~~~~~~~~~~~~~v~~g~lG~k~g~Gfy~y  283 (283)
T 4e12_A          243 TAYNISSV---SGPKQREFAAYLKENYIDKGKLGLATGEGFYRY  283 (283)
T ss_dssp             HHHHHHHT---SCHHHHHHHHHHHHHTGGGTCCBGGGTBSSSBC
T ss_pred             HHHHHHhc---cccCcccCchHHHHHHHHCCCCceeCCeEeecC
Confidence            99999873   2222 2346788999999999999999999998

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=100.00  E-value=9.4e-53  Score=423.42  Aligned_cols=282  Identities=34%  Similarity=0.536  Sum_probs=259.5

Q ss_pred             CCCCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-----HHHhhhccccc
Q 009395          143 APRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-----KFEKTISLLTG  217 (535)
Q Consensus       143 ~~~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-----~~~~~~~~i~~  217 (535)
                      +..+++||+|||+|.||.+||..|+++|++|++||+++++++.+.+.+.+.++..++.|.++..     .......+++.
T Consensus        11 ~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            3446789999999999999999999999999999999999999888888888888888887643     34444567777


Q ss_pred             ccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEE
Q 009395          218 VLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE  296 (535)
Q Consensus       218 ~~~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve  296 (535)
                      +++++ .+++||+||+|||++.++++.+++++.+.+++++||+||+|+++++++++.+.+|.+++|+||++|++.+++++
T Consensus        91 ~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~  170 (302)
T 1f0y_A           91 STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVE  170 (302)
T ss_dssp             ESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEE
T ss_pred             ecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEE
Confidence            77876 78999999999999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHH
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLA  374 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~  374 (535)
                      +++++.+++++++.+.++++.+|+.++++++.+||++||++.++++|+++++++|. ++++||.+++ ++|||+|||+++
T Consensus       171 i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~~  250 (302)
T 1f0y_A          171 VIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELL  250 (302)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHH
Confidence            99999999999999999999999999999988999999999999999999999885 9999999998 999999999999


Q ss_pred             HHhchHHHHHHHHHHHHhC-CCC-CccCccHHHHHHCCCCCccCCceeeeec
Q 009395          375 DLVGFGVAIATGMQFIENF-PER-TYKSMIIPIMQEDKRAGETTRKGFYLYD  424 (535)
Q Consensus       375 D~~Gld~~~~~~~~l~~~~-~~~-~~~~~~l~~~~~~G~~G~k~g~GFY~y~  424 (535)
                      |.+|+|+++++++.+++.+ +++ +.|++++++|+++|++|+|||+|||+|+
T Consensus       251 D~~Gld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~Gfy~y~  302 (302)
T 1f0y_A          251 DYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK  302 (302)
T ss_dssp             HHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHHHHHTTCCBTTTTBSSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCccCcCHHHHHHHHcCCCccccCcEeeeCC
Confidence            9999999999999999998 775 5688999999999999999999999994

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.90  E-value=4.5e-25  Score=186.70  Aligned_cols=103  Identities=19%  Similarity=0.171  Sum_probs=86.0

Q ss_pred             hcCCceE-EeCCcccchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHHHHHHHHHHhC
Q 009395          317 KIKKTPI-VVGNCTGFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENF  393 (535)
Q Consensus       317 ~lGk~~i-~v~d~~G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~  393 (535)
                      .++|.+| +++|.|||++||++.++++||++++++|+ ++++||.+++ ++|||+|||+++|.+|+|+++++++++++.+
T Consensus         3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~   82 (110)
T 3ctv_A            3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF   82 (110)
T ss_dssp             --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4688899 88899999999999999999999999997 9999999999 9999999999999999999999999999998


Q ss_pred             CC-CCccCccHHHHHHCCCCCccCCce
Q 009395          394 PE-RTYKSMIIPIMQEDKRAGETTRKG  419 (535)
Q Consensus       394 ~~-~~~~~~~l~~~~~~G~~G~k~g~G  419 (535)
                      ++ ++.|+++|++|+++|++|+|||+|
T Consensus        83 g~~~~~p~~~L~~~v~~G~lG~k~g~G  109 (110)
T 3ctv_A           83 GKKIFEPAKTLKEGKLEELLKAGKAEG  109 (110)
T ss_dssp             CCGGGSCCHHHHTTTHHHHHHHHHHC-
T ss_pred             CCCcCCCCHHHHHHHHcCCCCccCCCC
Confidence            88 566889999999999999999987

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.90  E-value=2.5e-23  Score=220.40  Aligned_cols=150  Identities=13%  Similarity=0.112  Sum_probs=134.1

Q ss_pred             CCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHH
Q 009395          262 TSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYT  341 (535)
Q Consensus       262 tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~  341 (535)
                      +++.+.++.  ...+|.++++.|+++    ++++|+++++.|++++++.+.++++.+|+.++.++|.|||++||++++++
T Consensus       325 ~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~~  398 (483)
T 3mog_A          325 TQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMII  398 (483)
T ss_dssp             CSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHHH
T ss_pred             cCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHHH
Confidence            455555555  334688999999987    68999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHHHHHHHHHHhCCC-CCccCccHHHHHHCCCCCccCC
Q 009395          342 QAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPE-RTYKSMIIPIMQEDKRAGETTR  417 (535)
Q Consensus       342 ~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~l~~~~~~G~~G~k~g  417 (535)
                      |||++++++|+ +++|||.+|+ |+|||+|||+++|.+|+|+++++++.|++.+++ ++.|+++|++|+++|++|...|
T Consensus       399 nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~p~~lL~~~v~~G~~~~~~~  477 (483)
T 3mog_A          399 NEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYRPCSLLRQRALLESGYESEG  477 (483)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHTCC----
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHcCCCCCCCC
Confidence            99999999998 9999999999 999999999999999999999999999999987 5669999999999987665433

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.84  E-value=2.4e-21  Score=195.43  Aligned_cols=201  Identities=17%  Similarity=0.240  Sum_probs=159.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+|||+|.||.+||..|+.+|+ +|++||+++++++.....+....            .......++..+++++++++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~t~d~~a~~~   72 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSM------------VMFGSTSKVIGTDDYADISG   72 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHH------------HHHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhh------------hhcCCCcEEEECCCHHHhCC
Confidence            589999999999999999999998 99999999887765322221110            00111235666677888999


Q ss_pred             CCEEEEec--------------cCChHHHHHHHHHHHhhcCCCcee--eecCCcCcHHHHHhhcCC-CCcEEeecccCCC
Q 009395          227 VDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYS-KDRIVGAHFFSPA  289 (535)
Q Consensus       227 aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~~-~~r~ig~h~~~P~  289 (535)
                      ||+||+|+              +++..+++++++++.++++ ++++  +||++.+....+++..+. |.|++|+      
T Consensus        73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~------  145 (317)
T 2ewd_A           73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM------  145 (317)
T ss_dssp             CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES------
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec------
Confidence            99999999              7888899999999999975 7766  788777777777776665 6788875      


Q ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhh---hHHHHHHHH-------HHHHHcCC-CHHHHH
Q 009395          290 HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNR---MFFPYTQAA-------FLLVERGT-DLYLID  358 (535)
Q Consensus       290 ~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nr---i~~~~~~ea-------~~l~~~G~-~~~~ID  358 (535)
                                  .|+.++......+.+.+|+.   .++.+||++|+   .+.++++++       ..++++|+ +++++|
T Consensus       146 ------------~t~ld~~r~~~~la~~lg~~---~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id  210 (317)
T 2ewd_A          146 ------------AGVLDSSRFRTFIAQHFGVN---ASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQID  210 (317)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHTSC---GGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHH
T ss_pred             ------------cCcHHHHHHHHHHHHHhCcC---hhhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHH
Confidence                        25778888888898999976   46889999999   888888998       88889985 999999


Q ss_pred             HHHHhcCCChhHHHHHHHhch-HHHHH
Q 009395          359 RAITKFGMPMGPFRLADLVGF-GVAIA  384 (535)
Q Consensus       359 ~a~~g~G~p~GPf~~~D~~Gl-d~~~~  384 (535)
                      .+++..  ++|||+++|..|. ++.+.
T Consensus       211 ~~~~~~--~~~~~ei~~~~g~g~~~~~  235 (317)
T 2ewd_A          211 EIVCHT--RIAWKEVADNLKTGTAYFA  235 (317)
T ss_dssp             HHHHHH--HHHHHHHHHHHSSSCCCHH
T ss_pred             HHHHHH--HhhHHHHHHhhcCCchHHH
Confidence            998832  7899999998887 54444

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.82  E-value=3.3e-19  Score=176.48  Aligned_cols=190  Identities=15%  Similarity=0.127  Sum_probs=144.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YE  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~  222 (535)
                      .+||+|||+|+||.+|+..|+++|+   +|++||+++++++.+.+.          .|             +..+++ .+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~----------~g-------------i~~~~~~~~   59 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK----------CG-------------VHTTQDNRQ   59 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT----------TC-------------CEEESCHHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH----------cC-------------CEEeCChHH
Confidence            4689999999999999999999999   999999999987665321          12             223333 35


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhh-cCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEE-EEeC
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRT  300 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~  300 (535)
                      .+++||+||+|||+  +.+.++++++.+. ++++++++|++++++++.+++.++.+.++++.||++|+..+..++ ++++
T Consensus        60 ~~~~aDvVilav~p--~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~  137 (280)
T 3tri_A           60 GALNADVVVLAVKP--HQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFAN  137 (280)
T ss_dssp             HHSSCSEEEECSCG--GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECC
T ss_pred             HHhcCCeEEEEeCH--HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeC
Confidence            68899999999974  5778999999998 889989999999999999999988788999999999998877665 5678


Q ss_pred             CCCCHHHHHHHHHHHHhcCCceEEeCCc--ccch-h----hhhHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 009395          301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC--TGFA-V----NRMFFPYTQAAFL--LVERGTDLYLIDRAIT  362 (535)
Q Consensus       301 ~~ts~e~~~~~~~l~~~lGk~~i~v~d~--~G~i-~----nri~~~~~~ea~~--l~~~G~~~~~ID~a~~  362 (535)
                      +.++++.++.+.++++.+|+.+++..+.  ..+. +    ..++ .++.|++.  .+..|+++++.-+++.
T Consensus       138 ~~~~~~~~~~v~~l~~~iG~~~~v~~E~~~d~~talsgsgpa~~-~~~~eal~~a~v~~Gl~~~~a~~l~~  207 (280)
T 3tri_A          138 ETVDKDQKNLAESIMRAVGLVIWVSSEDQIEKIAALSGSGPAYI-FLIMEALQEAAEQLGLTKETAELLTE  207 (280)
T ss_dssp             TTSCHHHHHHHHHHHGGGEEEEECSSHHHHHHHHHHTTSHHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCeEEECCHHHhhHHHHHhccHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            8899999999999999999844332321  0000 0    1111 22233332  2467888877776654

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.76  E-value=1.4e-18  Score=170.69  Aligned_cols=210  Identities=10%  Similarity=0.042  Sum_probs=152.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      +||+|||+|.||..+|..|+++|++ |++||++++.++...+.          .|             +..++++ +.++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~----------~g-------------~~~~~~~~~~~~   67 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQK----------VE-------------AEYTTDLAEVNP   67 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHH----------TT-------------CEEESCGGGSCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHH----------cC-------------CceeCCHHHHhc
Confidence            5899999999999999999999999 99999999887654321          01             2234455 4568


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC-----CCCEEEEEeC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH-----VMPLLEIVRT  300 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~-----~~~lveiv~~  300 (535)
                      +||+||+|+|++ . ..++++++.+.+++++++++++++++.+.+++.+..+   -..||++|..     .++.+.++- 
T Consensus        68 ~~Dvvi~av~~~-~-~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~v-  141 (266)
T 3d1l_A           68 YAKLYIVSLKDS-A-FAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHY---GVFYPMQTFSKQREVDFKEIPFFI-  141 (266)
T ss_dssp             CCSEEEECCCHH-H-HHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSE---EEEEECCCC---CCCCCTTCCEEE-
T ss_pred             CCCEEEEecCHH-H-HHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhc---cCcCCceecCCCchhhcCCCeEEE-
Confidence            999999999976 3 3788889988888999999999999887776655432   2357776532     122222221 


Q ss_pred             CCCCHHHHHHHHHHHHhcCCceEEeCCc--ccc-----hhhhhH--HHHHHHHHHHHHcCCCHHHHHHHH--------H-
Q 009395          301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC--TGF-----AVNRMF--FPYTQAAFLLVERGTDLYLIDRAI--------T-  362 (535)
Q Consensus       301 ~~ts~e~~~~~~~l~~~lGk~~i~v~d~--~G~-----i~nri~--~~~~~ea~~l~~~G~~~~~ID~a~--------~-  362 (535)
                      ..++++..+.+.++++.+|+.++.+++.  +++     ++|++.  ...+.|++. .+.|++++++..++        + 
T Consensus       142 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~-~~~Gl~~~~~~~l~~~~~~~~~~~  220 (266)
T 3d1l_A          142 EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL-KKYNLPFDVMLPLIDETARKVHEL  220 (266)
T ss_dssp             EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred             ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhc
Confidence            2357899999999999999999999853  355     677775  344566532 46799888874443        3 


Q ss_pred             hc-CCChhHHHHHHHhchHHHHHHHH
Q 009395          363 KF-GMPMGPFRLADLVGFGVAIATGM  387 (535)
Q Consensus       363 g~-G~p~GPf~~~D~~Gld~~~~~~~  387 (535)
                      +. +.++||+...|..|++.....++
T Consensus       221 ~~~~~~~GP~~r~d~~~l~~~l~~l~  246 (266)
T 3d1l_A          221 EPKTAQTGPAIRYDENVIGNHLRMLA  246 (266)
T ss_dssp             CHHHHCCSTTTTTCHHHHHHHHHHTT
T ss_pred             ChhhhCCCCCccCCHHHHHHHHHHHh
Confidence            32 45789999999999998877664

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.76  E-value=1.7e-17  Score=161.30  Aligned_cols=189  Identities=18%  Similarity=0.212  Sum_probs=143.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC----cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009395          148 KKVAILGGGLMGSGIATALILSNY----PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~----~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (535)
                      +||+|||+|.||.+|+..|+++|+    +|++||+++++++...+.          .|             +..+++. +
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~e   59 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEK----------YG-------------LTTTTDNNE   59 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHH----------HC-------------CEECSCHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHH----------hC-------------CEEeCChHH
Confidence            589999999999999999999998    999999999987665321          12             2233343 4


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCC-EEEEEeCC
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTN  301 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~~  301 (535)
                      .+++||+||+|+|  +....++++++.+.++++++++|++++++++.+++.++.+.++++.||++|+.... .+.+++++
T Consensus        60 ~~~~aDvVilav~--~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~  137 (247)
T 3gt0_A           60 VAKNADILILSIK--PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNE  137 (247)
T ss_dssp             HHHHCSEEEECSC--TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECT
T ss_pred             HHHhCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCC
Confidence            5788999999996  44678889999998999999999999999999988887778999999999998766 67788888


Q ss_pred             CCCHHHHHHHHHHHHhcCCceEEeCCc-ccch---hh--hhHHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 009395          302 QTSPQVIVDLLDIGKKIKKTPIVVGNC-TGFA---VN--RMFFPYTQAAFLL--VERGTDLYLIDRAIT  362 (535)
Q Consensus       302 ~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G~i---~n--ri~~~~~~ea~~l--~~~G~~~~~ID~a~~  362 (535)
                      .++++.++.++++++.+|+ ++.+.+. ...+   ..  ..+...+.|++..  ...|+++++..+++.
T Consensus       138 ~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~  205 (247)
T 3gt0_A          138 MVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAA  205 (247)
T ss_dssp             TCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            8999999999999999998 5555431 1111   00  1112234555444  457899988888776

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.74  E-value=8.1e-17  Score=161.77  Aligned_cols=162  Identities=14%  Similarity=0.158  Sum_probs=128.0

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  222 (535)
                      .++||+|||+|.||++||..|.++|+  +|++||++++.++.+.           +.|.++           ..+++++ 
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-----------~~G~~~-----------~~~~~~~~   89 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIAK   89 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCTTG
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-----------HCCCcc-----------hhcCCHHH
Confidence            45899999999999999999999999  9999999998876543           233221           1234444 


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc--HHHHHhhcCCCCcEEeecccCCCC---------
Q 009395          223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH---------  290 (535)
Q Consensus       223 -~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~---------  290 (535)
                       .+++||+||+|||++  ...++++++.+.++++++|++++|+..  ++.+.+.++  .+|++.||+.+..         
T Consensus        90 ~~~~~aDvVilavp~~--~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~~  165 (314)
T 3ggo_A           90 VEDFSPDFVMLSSPVR--TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLD  165 (314)
T ss_dssp             GGGGCCSEEEECSCGG--GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCCT
T ss_pred             HhhccCCEEEEeCCHH--HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhhh
Confidence             588999999999976  457889999999999999988777643  456666553  3899999998643         


Q ss_pred             ---CCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC-Ccccchh
Q 009395          291 ---VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG-NCTGFAV  333 (535)
Q Consensus       291 ---~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~-d~~G~i~  333 (535)
                         .+..+.+++++.++++.++.++++++.+|+.++.++ +..+.++
T Consensus       166 ~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~  212 (314)
T 3ggo_A          166 NLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVF  212 (314)
T ss_dssp             TTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHH
T ss_pred             hhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHH
Confidence               256888899988999999999999999999999886 3344443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.73  E-value=3.9e-17  Score=162.77  Aligned_cols=188  Identities=17%  Similarity=0.233  Sum_probs=136.8

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      .|+||+|||+|.||.+||.+|+++||+|++|||++++.+...           +.|.             +...++ +.+
T Consensus         2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~-----------~~Ga-------------~~a~s~~e~~   57 (300)
T 3obb_A            2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAGA-------------SAARSARDAV   57 (300)
T ss_dssp             -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTTC-------------EECSSHHHHH
T ss_pred             CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HcCC-------------EEcCCHHHHH
Confidence            368999999999999999999999999999999999887553           3332             123334 557


Q ss_pred             cCCCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeeccc-CCCCC-------
Q 009395          225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------  291 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~~-------  291 (535)
                      ++||+||.|+|.+.++...++.  .+.+.++++.+++. +||.+++   ++++.+..    .|.+|+ .|++.       
T Consensus        58 ~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId-~sT~~p~~~~~~a~~~~~----~G~~~lDaPVsGg~~~A~~  132 (300)
T 3obb_A           58 QGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARE----RGLAMLDAPVSGGTAGAAA  132 (300)
T ss_dssp             TTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEE-CSCCCHHHHHHHHHHHHT----TTCEEEECCEESCHHHHHH
T ss_pred             hcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCEEEecCCCCCHHHHHh
Confidence            8999999999977665444433  26667788888764 5556655   44444422    256665 35543       


Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-ccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      +.++.++.|   +++.++.++++++.+|+..+++++. .|.   ++|+++..    .+.|++.+.+ .|++++.+-+++.
T Consensus       133 G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~  209 (300)
T 3obb_A          133 GTLTFMVGG---DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMR  209 (300)
T ss_dssp             TCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            467777777   6899999999999999999999863 333   45665543    3689999986 7899999999987


Q ss_pred             -hcC
Q 009395          363 -KFG  365 (535)
Q Consensus       363 -g~G  365 (535)
                       +.+
T Consensus       210 ~~~~  213 (300)
T 3obb_A          210 RSSG  213 (300)
T ss_dssp             TSTT
T ss_pred             hCcc
Confidence             543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.69  E-value=4.8e-16  Score=155.64  Aligned_cols=188  Identities=15%  Similarity=0.166  Sum_probs=133.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++.+.           +.|.            ...++++ +.++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~------------~~~~~~~~e~~~   63 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLL-----------AEGA------------CGAAASAREFAG   63 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC------------SEEESSSTTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-----------HcCC------------ccccCCHHHHHh
Confidence            46899999999999999999999999999999999877643           2231            1113344 5578


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHhhcCCCceeeecCCcCcHH---HHHhhcC-CCCcEEeecccCCC----CCCCEE
Q 009395          226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSPA----HVMPLL  295 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P~----~~~~lv  295 (535)
                      +||+||+|+|++..++..++  +++.+.+++++++++.+ +.++.   .+.+.+. ....|+. ||+.+.    ....++
T Consensus        64 ~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~s-t~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~  141 (303)
T 3g0o_A           64 VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSS-TISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMT  141 (303)
T ss_dssp             TCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECS-CCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEE
T ss_pred             cCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecC-CCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeE
Confidence            99999999997655544333  66778888898887544 44443   3444442 2334555 444211    123556


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc--c---hhhhhHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G--~---i~nri~~----~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      .++.+   +++.++.++++++.+|+.++.+++.+|  .   ++|+++.    ..++|++.+.+ .|++++++..++.
T Consensus       142 ~~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~  215 (303)
T 3g0o_A          142 VMASG---SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVT  215 (303)
T ss_dssp             EEEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred             EEeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            66665   689999999999999999999886344  2   3444443    34799999876 6899999999987

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.68  E-value=4.3e-16  Score=156.51  Aligned_cols=189  Identities=15%  Similarity=0.149  Sum_probs=134.4

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .+++||+|||+|.||.++|..|+++|++|++||+++++++.+.           +.|             +..++++ +.
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~~~~~~   74 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV-----------EHG-------------ASVCESPAEV   74 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-----------HTT-------------CEECSSHHHH
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HCC-------------CeEcCCHHHH
Confidence            4578999999999999999999999999999999998876543           122             2234444 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHH---HHHHhhcCCCceeeecCCcCcHH---HHHhhcC-CCCcEEeecccCC----CCCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIF---ADLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSP----AHVM  292 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~---~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P----~~~~  292 (535)
                      +++||+||+|+|++..++ .++   .++.+.++++++|++.+ +.++.   .+.+.+. ....|+. ||+..    ....
T Consensus        75 ~~~aDvvi~~vp~~~~~~-~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g  151 (310)
T 3doj_A           75 IKKCKYTIAMLSDPCAAL-SVVFDKGGVLEQICEGKGYIDMS-TVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDG  151 (310)
T ss_dssp             HHHCSEEEECCSSHHHHH-HHHHSTTCGGGGCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHT
T ss_pred             HHhCCEEEEEcCCHHHHH-HHHhCchhhhhccCCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcC
Confidence            788999999999765554 445   67778888888887544 44443   3333332 2234444 33321    1124


Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc------chhhhhHH---HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG------FAVNRMFF---PYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G------~i~nri~~---~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      .++.++.+   +++.++.++++++.+|+.++.+++ +|      ++.|.++.   ..++|++.+.+ .|++++++..++.
T Consensus       152 ~l~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~  227 (310)
T 3doj_A          152 QLIILAAG---DKALFEESIPAFDVLGKRSFYLGQ-VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILD  227 (310)
T ss_dssp             CEEEEEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CeEEEEcC---CHHHHHHHHHHHHHhCCCEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            56667766   588999999999999999999986 34      23343332   34799999986 6899999999988


Q ss_pred             -hc
Q 009395          363 -KF  364 (535)
Q Consensus       363 -g~  364 (535)
                       +.
T Consensus       228 ~~~  230 (310)
T 3doj_A          228 LGA  230 (310)
T ss_dssp             HST
T ss_pred             hcc
Confidence             44

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.67  E-value=4.4e-16  Score=155.15  Aligned_cols=186  Identities=19%  Similarity=0.206  Sum_probs=128.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC-cccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD-YESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~~~  226 (535)
                      +||+|||+|.||.+||.+|+++||+|++||+++++.+.+.           +.|.             ....+ .+.+++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G~-------------~~~~s~~e~~~~   61 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLT-----------KLGA-------------TVVENAIDAITP   61 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTT-----------TTTC-------------EECSSGGGGCCT
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HcCC-------------eEeCCHHHHHhc
Confidence            4899999999999999999999999999999998865432           2221             22333 356789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeeccc-CCCCC-------CCEE
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAHV-------MPLL  295 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~~-------~~lv  295 (535)
                      ||+||.|+|.+..+...+...+.+.+.++.+++. +||.+++   ++++.+..    .|.+|. .|+..       ..+.
T Consensus        62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid-~sT~~p~~~~~~~~~~~~----~g~~~ldapVsGg~~~a~~g~l~  136 (297)
T 4gbj_A           62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVS-MSTISPETSRQLAQVHEW----YGAHYVGAPIFARPEAVRAKVGN  136 (297)
T ss_dssp             TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEE-CSCCCHHHHHHHHHHHHH----TTCEEEECCEECCHHHHHHTCCE
T ss_pred             CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEE-CCCCChHHHHHHHHHHHh----cCCceecCCcCCCccccccccce
Confidence            9999999998776665555778888888888764 4555554   34443321    144554 34432       3455


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc--c---hhhhhHH----HHHHHHHHHHH-cCCCHHHHHHHHH-hc
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG--F---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT-KF  364 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G--~---i~nri~~----~~~~ea~~l~~-~G~~~~~ID~a~~-g~  364 (535)
                      .++.+   +++.++.++++++.+|+..+++++.+|  .   ++|+++.    ..+.|++.+.+ .|++++.+-+++. +.
T Consensus       137 im~gG---~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~  213 (297)
T 4gbj_A          137 ICLSG---NAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTL  213 (297)
T ss_dssp             EEEEE---CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred             eeccc---chhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence            55555   689999999999999999999986544  2   4566554    34789999976 6999999999987 54


Q ss_pred             C
Q 009395          365 G  365 (535)
Q Consensus       365 G  365 (535)
                      +
T Consensus       214 ~  214 (297)
T 4gbj_A          214 F  214 (297)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.67  E-value=6.9e-16  Score=153.27  Aligned_cols=188  Identities=18%  Similarity=0.134  Sum_probs=134.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      +||+|||+|.||.++|..|+++|++|++||+++++++.+.+           .|             +..++++ +.+++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   57 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA-----------LG-------------AERAATPCEVVES   57 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhc
Confidence            58999999999999999999999999999999998765431           12             2334455 44688


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHhhcCCCceeeecCCcCcHH---HHHhhcC-CCCcEEeecccCCC----CCCCEEE
Q 009395          227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSPA----HVMPLLE  296 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P~----~~~~lve  296 (535)
                      ||+||+|+|++..++..++  +++.+.+++++++++. |+.++.   .+.+.+. ....|+. ||+.+.    ....++.
T Consensus        58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~  135 (287)
T 3pef_A           58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDM-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLII  135 (287)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEE
T ss_pred             CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeC-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEE
Confidence            9999999997655544433  7788889899888755 444443   3333332 2234555 443221    1245666


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-cccc---hhhhhHHH----HHHHHHHHHH-cCCCHHHHHHHHH-hc
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFFP----YTQAAFLLVE-RGTDLYLIDRAIT-KF  364 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~---i~nri~~~----~~~ea~~l~~-~G~~~~~ID~a~~-g~  364 (535)
                      ++.+   +++.++.++++++.+|+.++.+++ ..+.   ++|+++..    .++|++.+.+ .|++++++..++. +.
T Consensus       136 ~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~  210 (287)
T 3pef_A          136 LAAG---DRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGA  210 (287)
T ss_dssp             EEEE---CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred             EEeC---CHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            6665   588999999999999999999875 2332   34555433    5799999886 6899999999988 44

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.66  E-value=1.9e-16  Score=156.46  Aligned_cols=208  Identities=10%  Similarity=0.007  Sum_probs=140.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      +||+|||+|.||.+|+..|+++ ++| .+||++++.++.+.+.          .|            .  .+++++ .++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~----------~g------------~--~~~~~~~~~~   57 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEV----------YG------------G--KAATLEKHPE   57 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHH----------TC------------C--CCCSSCCCCC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHH----------cC------------C--ccCCHHHHHh
Confidence            5799999999999999999988 999 5999999887654311          11            1  233444 468


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccC-----CCCC---CCEEEE
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFS-----PAHV---MPLLEI  297 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~-----P~~~---~~lvei  297 (535)
                      +||+||+|+|++.  ..+++.++.   .++++|++.+++++.+.++..     .+.+.|+..     |...   ..+...
T Consensus        58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~  127 (276)
T 2i76_A           58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFG  127 (276)
T ss_dssp             ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred             cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEE
Confidence            8999999999764  467776654   577888876666777655432     456677532     2211   122223


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCceEEeCCc--cc-----chhhhhHHHHHHHHHHHHH-cCCCH----------HHHHH
Q 009395          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC--TG-----FAVNRMFFPYTQAAFLLVE-RGTDL----------YLIDR  359 (535)
Q Consensus       298 v~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~--~G-----~i~nri~~~~~~ea~~l~~-~G~~~----------~~ID~  359 (535)
                      +.+   +++.++.++++++.+|+.++.+++.  +.     .+.++.+..++.++..+.. .|++.          ..++.
T Consensus       128 ~~~---~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~~  204 (276)
T 2i76_A          128 LEG---DERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELLIHTLMKGVADN  204 (276)
T ss_dssp             ECC---CTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             EEe---ChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            333   4566899999999999988888732  21     2344566677788888877 78854          46777


Q ss_pred             HHH-h-cCCChhHHHHHHHhchHHHHHHHHHHHHhC
Q 009395          360 AIT-K-FGMPMGPFRLADLVGFGVAIATGMQFIENF  393 (535)
Q Consensus       360 a~~-g-~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~  393 (535)
                      +++ + .+.++||++..|..+++..++.++.+++.+
T Consensus       205 ~~~~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~~  240 (276)
T 2i76_A          205 IKKMRVECSLTGPVKRGDWQVVEEERREYEKIFGNT  240 (276)
T ss_dssp             HHHSCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSCC
T ss_pred             HHhcChHhhCCCCcccCCHHHHHHHHHHHhccCccH
Confidence            777 5 677899999999999999999998875443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.65  E-value=1.6e-15  Score=151.26  Aligned_cols=185  Identities=19%  Similarity=0.192  Sum_probs=130.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-ccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~  226 (535)
                      +||+|||+|.||.++|..|+++|++|++||+++++++.+.+           .|             +..++++++ ++ 
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~-   70 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE-----------AG-------------ATLADSVADVAA-   70 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH-----------TT-------------CEECSSHHHHTT-
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CEEcCCHHHHHh-
Confidence            58999999999999999999999999999999988765431           12             334555544 56 


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCC-CCcEEeecccCCC---CCCCEEEEEe
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS-KDRIVGAHFFSPA---HVMPLLEIVR  299 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~-~~r~ig~h~~~P~---~~~~lveiv~  299 (535)
                      ||+||+|+|++..+ +++++++.+.+++++++++.++ .++.   .+.+.+.. ...|+....+.++   ....++.++.
T Consensus        71 aDvvi~~vp~~~~~-~~v~~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g  148 (296)
T 3qha_A           71 ADLIHITVLDDAQV-REVVGELAGHAKPGTVIAIHST-ISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVG  148 (296)
T ss_dssp             SSEEEECCSSHHHH-HHHHHHHHTTCCTTCEEEECSC-CCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEE
T ss_pred             CCEEEEECCChHHH-HHHHHHHHHhcCCCCEEEEeCC-CCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEec
Confidence            99999999976554 5667889888999988875544 4333   34444422 2234432111111   1245666766


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCceEEeCC-cccc---hhhhhHH----HHHHHHHHHHH-cCCCHHHH------HHHHH
Q 009395          300 TNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLI------DRAIT  362 (535)
Q Consensus       300 ~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~---i~nri~~----~~~~ea~~l~~-~G~~~~~I------D~a~~  362 (535)
                      +   +++.++.++++++.+|+.++++++ ..|.   ++|+++.    ..++|++.+.+ .|++++++      ..++.
T Consensus       149 g---~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~  223 (296)
T 3qha_A          149 A---DREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALT  223 (296)
T ss_dssp             C---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHHHcCCeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHh
Confidence            6   689999999999999999999875 2222   3444443    34799999986 68999999      77776

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.65  E-value=4.3e-16  Score=156.59  Aligned_cols=186  Identities=14%  Similarity=0.104  Sum_probs=125.7

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNY-PVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      ..++||+|||+|.||.+||..|+++|+ +|++||++  ++..+.+.           +.|             +..+++.
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~-----------~~g-------------~~~~~~~   77 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE-----------ELG-------------VSCKASV   77 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH-----------HTT-------------CEECSCH
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH-----------HCC-------------CEEeCCH
Confidence            346799999999999999999999999 99999997  45554332           122             2233444


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--HHHhhcCCCCcEEeecccC-----C--CCC
Q 009395          222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYSKDRIVGAHFFS-----P--AHV  291 (535)
Q Consensus       222 -~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~~r~ig~h~~~-----P--~~~  291 (535)
                       +.+++||+||+|||++...  +++.++.+.++++++|++.+|..+..  .+.+.+.  .+++|.||++     |  ...
T Consensus        78 ~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~--~~~~g~~~vd~pv~g~~~~~~  153 (312)
T 3qsg_A           78 AEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVIS--RHRPSAQYAAVAVMSAVKPHG  153 (312)
T ss_dssp             HHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHH--HHCTTCEEEEEEECSCSTTTG
T ss_pred             HHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHH--hhcCCCeEEeccccCCchhhc
Confidence             4578999999999987654  46788999999999888665544332  3333331  1222344432     1  112


Q ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccc-----hhhhhHH----HHHHHHHHHHH-cCCCHHHHHHHH
Q 009395          292 MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAI  361 (535)
Q Consensus       292 ~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~-----i~nri~~----~~~~ea~~l~~-~G~~~~~ID~a~  361 (535)
                      ..+..++.++..     +.++++++.+|+.++++++.+|.     ++|+++.    ..++|++.+.+ .|++++-+ ..+
T Consensus       154 g~l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~-~~l  227 (312)
T 3qsg_A          154 HRVPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADRVL-ASL  227 (312)
T ss_dssp             GGSEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH-HHH
T ss_pred             CCEEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HHH
Confidence            357777887532     78899999999999999864453     3455544    55799999876 68988544 455


Q ss_pred             H-hc
Q 009395          362 T-KF  364 (535)
Q Consensus       362 ~-g~  364 (535)
                      . ++
T Consensus       228 ~~~~  231 (312)
T 3qsg_A          228 DASF  231 (312)
T ss_dssp             HHHS
T ss_pred             HhcC
Confidence            5 44

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.65  E-value=1.1e-15  Score=151.90  Aligned_cols=190  Identities=16%  Similarity=0.131  Sum_probs=131.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      |+||+|||+|.||.++|..|+++|++|++||+++++++.+.+           .|             +..+++. +.++
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~   56 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA-----------LG-------------ARQASSPAEVCA   56 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHH-----------HT-------------CEECSCHHHHHH
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC-------------CeecCCHHHHHH
Confidence            468999999999999999999999999999999998765432           12             2234444 4468


Q ss_pred             CCCEEEEeccCChHHHHHHH--HHHHhhcCCCceeeecCCcCcHH---HHHhhcC-CCCcEEeecccCCC---CCCCEEE
Q 009395          226 DVDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSPA---HVMPLLE  296 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P~---~~~~lve  296 (535)
                      +||+||+|+|++..++..++  +++.+.+++++++++.+ +.++.   .+.+.+. ...+|+....+.++   ....++.
T Consensus        57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~s-t~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~  135 (287)
T 3pdu_A           57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMS-TVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLII  135 (287)
T ss_dssp             HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEE
T ss_pred             cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECC-CCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEE
Confidence            89999999997655544333  66778888888876544 44443   3333332 22334443222111   1134555


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-cccc---hhhhhHH----HHHHHHHHHHH-cCCCHHHHHHHHH-hc
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT-KF  364 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~---i~nri~~----~~~~ea~~l~~-~G~~~~~ID~a~~-g~  364 (535)
                      ++.+   +++.++.++++++.+|+.++++++ ..|.   ++|+.+.    ..++|++.+.+ .|++++++..++. +.
T Consensus       136 ~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~  210 (287)
T 3pdu_A          136 LAAG---DQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGA  210 (287)
T ss_dssp             EEEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred             EEeC---CHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            6555   689999999999999999999986 2332   3344432    34799999876 6899999999998 54

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.64  E-value=2.2e-15  Score=149.57  Aligned_cols=189  Identities=16%  Similarity=0.089  Sum_probs=135.1

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      ++||+|||+ |.||.++|..|+++|++|++||++++.++.+.+           .|             +..++..+.++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g-------------~~~~~~~~~~~   66 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-----------MG-------------IPLTDGDGWID   66 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-----------TT-------------CCCCCSSGGGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-----------cC-------------CCcCCHHHHhc
Confidence            469999999 999999999999999999999999988765431           12             11233345678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC--------CC-C---
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--------VM-P---  293 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--------~~-~---  293 (535)
                      +||+||+|+|++.  ..++++++.+.++++++|++.+++.+++.+.+ +....++++.||+.|..        .. .   
T Consensus        67 ~aDvVi~av~~~~--~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~  143 (286)
T 3c24_A           67 EADVVVLALPDNI--IEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHG  143 (286)
T ss_dssp             TCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSS
T ss_pred             CCCEEEEcCCchH--HHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCccc
Confidence            9999999998654  57888999998999999988777676666654 33346899999998765        21 2   


Q ss_pred             ----EEEEEeCCCCCHHHHHHHHHHHHhcCC---ceEEeCC-cccch----hhhhHHHH---HHHHHHHH-H-cCCCHHH
Q 009395          294 ----LLEIVRTNQTSPQVIVDLLDIGKKIKK---TPIVVGN-CTGFA----VNRMFFPY---TQAAFLLV-E-RGTDLYL  356 (535)
Q Consensus       294 ----lveiv~~~~ts~e~~~~~~~l~~~lGk---~~i~v~d-~~G~i----~nri~~~~---~~ea~~l~-~-~G~~~~~  356 (535)
                          ...++....++++.++.+.++++.+|.   .++.+++ ..+.+    .|....++   +.|++... . .|+++++
T Consensus       144 ~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~  223 (286)
T 3c24_A          144 GIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQA  223 (286)
T ss_dssp             SSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             ccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence                233433333678999999999999999   7888863 22222    33333332   45554443 2 4888887


Q ss_pred             HHHHHH
Q 009395          357 IDRAIT  362 (535)
Q Consensus       357 ID~a~~  362 (535)
                      +-.++.
T Consensus       224 ~~~~~~  229 (286)
T 3c24_A          224 ALDFMI  229 (286)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.64  E-value=4.1e-15  Score=150.12  Aligned_cols=190  Identities=13%  Similarity=0.097  Sum_probs=135.2

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSN----YPVILKEVNEK--FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~--~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      .++||+|||+|.||.+||..|+++|    ++|++||++++  .++.+.           +.|             +..++
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~-----------~~G-------------~~~~~   76 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR-----------KMG-------------VKLTP   76 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH-----------HHT-------------CEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH-----------HcC-------------CEEeC
Confidence            3468999999999999999999999    89999999985  554432           112             22233


Q ss_pred             Cc-ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCC---CCcEEeecccCCCCCCCEE
Q 009395          220 DY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYS---KDRIVGAHFFSPAHVMPLL  295 (535)
Q Consensus       220 ~~-~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~---~~r~ig~h~~~P~~~~~lv  295 (535)
                      +. +.+++||+||+|||.  ....+++.++.+.++++++|++.+++++++.+.+.+..   ..++++.||+.|.......
T Consensus        77 ~~~e~~~~aDvVilav~~--~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~  154 (322)
T 2izz_A           77 HNKETVQHSDVLFLAVKP--HIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGA  154 (322)
T ss_dssp             CHHHHHHHCSEEEECSCG--GGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEE
T ss_pred             ChHHHhccCCEEEEEeCH--HHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCe
Confidence            33 457889999999983  46778899999889889999998888888877776643   4589999999888765444


Q ss_pred             EE-EeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc----c--hhhhhHHHHHHHHHH--HHHcCCCHHHHHHHHH
Q 009395          296 EI-VRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG----F--AVNRMFFPYTQAAFL--LVERGTDLYLIDRAIT  362 (535)
Q Consensus       296 ei-v~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G----~--i~nri~~~~~~ea~~--l~~~G~~~~~ID~a~~  362 (535)
                      .+ ++++.++++..+.+.++++.+|..+++..+...    .  ..+.+++ .+.|++.  ....|+++++...++.
T Consensus       155 ~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~gpa~~~-~~~eala~a~~~~Gl~~~~a~~l~~  229 (322)
T 2izz_A          155 TVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF-TALDALADGGVKMGLPRRLAVRLGA  229 (322)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHHHHTTTHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            44 477778899999999999999976544322111    1  1122222 2344433  2456888877666654

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.64  E-value=1.2e-15  Score=144.91  Aligned_cols=158  Identities=9%  Similarity=0.021  Sum_probs=125.3

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +.+||+|||+|.||+++|..|.++|++|++||+.                                          +++.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~~~~   42 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------EDIR   42 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------GGGG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------HHhc
Confidence            3468999999999999999999999999999972                                          1146


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCCH
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSP  305 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts~  305 (535)
                      +||  |.|+|.+  ...++++++.+.+++++++++.+++.+.+.+........+|++.||+...    ..-+.++   ++
T Consensus        43 ~aD--ilavP~~--ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~----~~~i~a~---d~  111 (232)
T 3dfu_A           43 DFE--LVVIDAH--GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQD----RWVASAL---DE  111 (232)
T ss_dssp             GCS--EEEECSS--CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETT----EEEEEES---SH
T ss_pred             cCC--EEEEcHH--HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCC----ceeeeCC---CH
Confidence            788  9999976  45788899999999999988766666655555544556789999998532    2223333   68


Q ss_pred             HHHHHHHHHHHhcCCceEEeCC--cccc----hhhhhHHHHHHHHHHHH---HcCC-CHHH
Q 009395          306 QVIVDLLDIGKKIKKTPIVVGN--CTGF----AVNRMFFPYTQAAFLLV---ERGT-DLYL  356 (535)
Q Consensus       306 e~~~~~~~l~~~lGk~~i~v~d--~~G~----i~nri~~~~~~ea~~l~---~~G~-~~~~  356 (535)
                      +.++.++++++.+|..++.+++  .+++    ..++.+.++.++|.+++   ++|+ +++|
T Consensus       112 ~a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d  172 (232)
T 3dfu_A          112 LGETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSD  172 (232)
T ss_dssp             HHHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh
Confidence            8999999999999999999863  4555    45778888999999999   7887 8888

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.62  E-value=4.1e-14  Score=138.49  Aligned_cols=149  Identities=16%  Similarity=0.130  Sum_probs=115.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      +||+|||+|.||.++|..|+++| ++|++||+++++++...+.          .|             +..+++. +.+ 
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~----------~g-------------~~~~~~~~~~~-   56 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------LG-------------VETSATLPELH-   56 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------TC-------------CEEESSCCCCC-
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh----------cC-------------CEEeCCHHHHh-
Confidence            47999999999999999999999 9999999999887654321          12             2233344 457 


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCC-EEEEEeCCCCC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQTS  304 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~~~ts  304 (535)
                      +||+||+|+|  +....+++.++.+  + +++|++.+++++++.+++.++.+.++++.+|..|..... .+.++++..++
T Consensus        57 ~~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~  131 (263)
T 1yqg_A           57 SDDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVS  131 (263)
T ss_dssp             TTSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSC
T ss_pred             cCCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCC
Confidence            9999999998  4455677766654  4 888999889999988888876656888886666665543 55677887789


Q ss_pred             HHHHHHHHHHHHhcCCceEEeC
Q 009395          305 PQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      ++.++.+.++++.+|+.+ .++
T Consensus       132 ~~~~~~~~~l~~~~g~~~-~~~  152 (263)
T 1yqg_A          132 ETDRRIADRIMKSVGLTV-WLD  152 (263)
T ss_dssp             HHHHHHHHHHHHTTEEEE-ECS
T ss_pred             HHHHHHHHHHHHhCCCEE-EeC
Confidence            999999999999999766 665

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.61  E-value=9.6e-15  Score=147.29  Aligned_cols=190  Identities=19%  Similarity=0.188  Sum_probs=132.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      ..+||+|||+|.||.++|..|+++|++|++||+++++++.+.           +.|             +..++++ +.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~~~~e~~   85 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLA-----------ALG-------------ATIHEQARAAA   85 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------TTT-------------CEEESSHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-----------HCC-------------CEeeCCHHHHH
Confidence            357999999999999999999999999999999999876543           112             2334455 457


Q ss_pred             cCCCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcHH---HHHhhcC-CCCcEEeecccCCC---CCCCEE
Q 009395          225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSPA---HVMPLL  295 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P~---~~~~lv  295 (535)
                      ++||+||+|+|++..+ +.++.  ++.+.++++++|++.++ .++.   .+.+.+. ...+|+....+.++   ..+.+.
T Consensus        86 ~~aDvVi~~vp~~~~~-~~v~~~~~~~~~l~~~~~vi~~st-~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~  163 (320)
T 4dll_A           86 RDADIVVSMLENGAVV-QDVLFAQGVAAAMKPGSLFLDMAS-ITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLV  163 (320)
T ss_dssp             TTCSEEEECCSSHHHH-HHHHTTTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEE
T ss_pred             hcCCEEEEECCCHHHH-HHHHcchhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCee
Confidence            8999999999976554 45554  67777888887765544 3333   3434332 22334443111111   124566


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-cccc---hhhhhHH----HHHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT-KFG  365 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~---i~nri~~----~~~~ea~~l~~-~G~~~~~ID~a~~-g~G  365 (535)
                      .++.+   ++++++.++++++.+ +.++++++ ..|.   ++++++.    ..++|++.+.+ .|++++++..++. +.+
T Consensus       164 i~~gg---~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~  239 (320)
T 4dll_A          164 IMAGG---KPADFERSLPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFA  239 (320)
T ss_dssp             EEEES---CHHHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTT
T ss_pred             EEeCC---CHHHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccc
Confidence            67766   688999999999999 88888875 2333   3444433    35799999886 6899999999987 543

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.58  E-value=1.2e-14  Score=146.92  Aligned_cols=152  Identities=14%  Similarity=0.196  Sum_probs=115.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc-
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF-  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~-  224 (535)
                      ++||+|||+|.||++||..|.++|++|++||++++.++.+.           +.|.             ..+++++ .+ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~-----------~~G~-------------~~~~~~~e~~~   63 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAV-----------DEGF-------------DVSADLEATLQ   63 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHH-----------HTTC-------------CEESCHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC-------------eeeCCHHHHHH
Confidence            57899999999999999999999999999999998876543           2232             1223332 23 


Q ss_pred             ---cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcCCCCcEEeecccCCCC---------
Q 009395          225 ---KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH---------  290 (535)
Q Consensus       225 ---~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~---------  290 (535)
                         .+||+||+|+|.  ....++++++.+. +++++|++.+|+.  .++.+.+.+. ..+|++.||+.+..         
T Consensus        64 ~a~~~aDlVilavP~--~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~~  139 (341)
T 3ktd_A           64 RAAAEDALIVLAVPM--TAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASMD  139 (341)
T ss_dssp             HHHHTTCEEEECSCH--HHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCCS
T ss_pred             hcccCCCEEEEeCCH--HHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhhh
Confidence               358999999994  4677889999886 7888887665543  2345554443 46899999987543         


Q ss_pred             ---CCCEEEEEeCCCCCHH--------HHHHHHHHHHhcCCceEEeC
Q 009395          291 ---VMPLLEIVRTNQTSPQ--------VIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       291 ---~~~lveiv~~~~ts~e--------~~~~~~~l~~~lGk~~i~v~  326 (535)
                         .+..+.+++++.++++        .++.+.++++.+|..++.++
T Consensus       140 ~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~  186 (341)
T 3ktd_A          140 GLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSR  186 (341)
T ss_dssp             STTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred             HHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeC
Confidence               1335778888888888        89999999999999999886

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.57  E-value=1.7e-14  Score=151.76  Aligned_cols=203  Identities=18%  Similarity=0.196  Sum_probs=137.2

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHH----HHHHHHHHH------HHHHHHHHHcCCCCHHHHHhhhc
Q 009395          146 RVKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEK----FLEAGIGRV------RANLQSRVKKGKMTQEKFEKTIS  213 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~----~~~~~~~~i------~~~~~~~~~~g~~~~~~~~~~~~  213 (535)
                      +++||+|||+|.||.++|..|+++ |+ +|++||++++    +++...+..      +..++..+++        ....+
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~--------~~~~g   88 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGK--------VVKAG   88 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHH--------HHHTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHh--------hcccC
Confidence            478999999999999999999999 99 9999999999    776654210      0001111100        00135


Q ss_pred             ccccccCcccccCCCEEEEeccCCh----------HHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHh-----hcC
Q 009395          214 LLTGVLDYESFKDVDMVIEAIIENV----------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGE-----RTY  275 (535)
Q Consensus       214 ~i~~~~~~~~~~~aDlVI~avpe~~----------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~-----~~~  275 (535)
                      ++.++++.+++++||+||+|||.+.          .......+.+.++++++++++ +.||+++.   ++..     ..+
T Consensus        89 ~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~ile~~~g  167 (478)
T 3g79_A           89 KFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQILEEESG  167 (478)
T ss_dssp             CEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHHHHHHC
T ss_pred             CeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHHHHhcC
Confidence            6778888888999999999998653          335666788999999999775 55676654   2322     111


Q ss_pred             CC--CcE-EeecccCCCCCCC---------EEEEEeCCCCCHHHHHHHHHHHHhc-CCceEEeCCc-cc---chhhhhHH
Q 009395          276 SK--DRI-VGAHFFSPAHVMP---------LLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGNC-TG---FAVNRMFF  338 (535)
Q Consensus       276 ~~--~r~-ig~h~~~P~~~~~---------lveiv~~~~ts~e~~~~~~~l~~~l-Gk~~i~v~d~-~G---~i~nri~~  338 (535)
                      ..  ..| +.   ++|....+         ...++.|  .+++..+.++++++.+ ++.++++++. .+   -++|+++.
T Consensus       168 ~~~~~d~~v~---~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~  242 (478)
T 3g79_A          168 LKAGEDFALA---HAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFR  242 (478)
T ss_dssp             CCBTTTBEEE---ECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHH
T ss_pred             CCcCCceeEE---eCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHH
Confidence            10  111 11   25543211         0124444  3688889999999999 8888888753 22   24555554


Q ss_pred             ----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          339 ----PYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       339 ----~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                          +++||+..+.+ .|+|++++-+++.
T Consensus       243 a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~  271 (478)
T 3g79_A          243 DLQIAAINQLALYCEAMGINVYDVRTGVD  271 (478)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHC
Confidence                45899999987 6999999999887

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.57  E-value=5.4e-14  Score=140.86  Aligned_cols=188  Identities=11%  Similarity=0.076  Sum_probs=129.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      ..+||+|||+|.||.+||..|+++|++|++||+++++++.+.+           .|             +...+++ +.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~   63 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVA-----------AG-------------AHLCESVKAAL   63 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HT-------------CEECSSHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHH
Confidence            3578999999999999999999999999999999998776431           12             1223344 457


Q ss_pred             cCCCEEEEeccCChHHHHHHHH--HHHhhcCCCceeeecCCcCcH--HHHHhhcC-CCCcEEeecccC-CCC--CCCEEE
Q 009395          225 KDVDMVIEAIIENVSLKQQIFA--DLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFS-PAH--VMPLLE  296 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~--~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~r~ig~h~~~-P~~--~~~lve  296 (535)
                      ++||+||+|+|++..+ +.++.  .+.. +.+++++++.+++.+.  ..+.+.+. ...+|+....+. |+.  ...++.
T Consensus        64 ~~aDvVi~~vp~~~~~-~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i  141 (306)
T 3l6d_A           64 SASPATIFVLLDNHAT-HEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHS  141 (306)
T ss_dssp             HHSSEEEECCSSHHHH-HHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEE
T ss_pred             hcCCEEEEEeCCHHHH-HHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEE
Confidence            8899999999976544 44555  5554 4567776644433222  24444332 234555542222 111  124555


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEe--CC--cccchhhhhHH---HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVV--GN--CTGFAVNRMFF---PYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v--~d--~~G~i~nri~~---~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      ++.+   +++.++.++++++.+|..++++  ++  ..|..++.++.   ..++|++.+.+ .|++++++..++.
T Consensus       142 ~~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~  212 (306)
T 3l6d_A          142 IHTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLL  212 (306)
T ss_dssp             EEEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             EEcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            5555   6899999999999998889999  74  45677773332   45789999876 6899999999887

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.56  E-value=2.4e-14  Score=151.61  Aligned_cols=206  Identities=14%  Similarity=0.160  Sum_probs=138.6

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHh--hhcccccccCcc-c
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK--TISLLTGVLDYE-S  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~~-~  223 (535)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++.+.+.....+    +.| + .+....  ..++++++++++ .
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~----e~g-l-~~~l~~~~~~~~l~~ttd~~~a   81 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIH----EPG-L-KEVIARNRSAGRLRFSTDIEAA   81 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSC----CTT-H-HHHHHHHHHTTCEEEECCHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcC----CCC-H-HHHHHHhcccCCEEEECCHHHH
Confidence            368999999999999999999999999999999999877653200000    000 0 000010  124577788874 6


Q ss_pred             ccCCCEEEEeccC--------ChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcC----CC---CcEEeecc
Q 009395          224 FKDVDMVIEAIIE--------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY----SK---DRIVGAHF  285 (535)
Q Consensus       224 ~~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~----~~---~r~ig~h~  285 (535)
                      +++||+||+|||.        |+..+.+++++|.++++++++|+ +.||+++.   .+.+.+.    .+   ..+  .+.
T Consensus        82 ~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV-~~STv~~gt~~~l~~~l~~~~~~g~~~~~~--~v~  158 (478)
T 2y0c_A           82 VAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIV-DKSTVPVGTAERVRAAVAEELAKRGGDQMF--SVV  158 (478)
T ss_dssp             HHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEE-ECSCCCTTHHHHHHHHHHHHHHHTTCCCCE--EEE
T ss_pred             hhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEE-EeCCcCCCchHHHHHHHHHHhcCCCCCccE--EEE
Confidence            8899999999987        44788899999999999999885 45676553   2222221    11   122  234


Q ss_pred             cCCCCCCCEE---------EEEeCCCCCH----HHHHHHHHHHHhcCC--ceEEeCCc-----ccchhhhhH---HHHHH
Q 009395          286 FSPAHVMPLL---------EIVRTNQTSP----QVIVDLLDIGKKIKK--TPIVVGNC-----TGFAVNRMF---FPYTQ  342 (535)
Q Consensus       286 ~~P~~~~~lv---------eiv~~~~ts~----e~~~~~~~l~~~lGk--~~i~v~d~-----~G~i~nri~---~~~~~  342 (535)
                      ++|....+..         .++.|. .++    +..+.+.++++.+++  .++.+.+.     .+++.|.++   .++++
T Consensus       159 ~~Pe~~~eG~~~~~~~~p~~iviG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~n  237 (478)
T 2y0c_A          159 SNPEFLKEGAAVDDFTRPDRIVIGC-DDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMN  237 (478)
T ss_dssp             ECCCCCCTTCHHHHHHSCSCEEEEC-CSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EChhhhcccceeeccCCCCEEEEEE-CCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5665432222         344443 234    788999999998775  56777652     345566655   35689


Q ss_pred             HHHHHHH-cCCCHHHHHHHHH
Q 009395          343 AAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       343 ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      |+..+.+ .|++++++..++.
T Consensus       238 E~~~la~~~Gid~~~v~~~i~  258 (478)
T 2y0c_A          238 ELANLADRFGADIEAVRRGIG  258 (478)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHh
Confidence            9999987 6899999998875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.56  E-value=1.3e-13  Score=138.69  Aligned_cols=192  Identities=14%  Similarity=0.130  Sum_probs=126.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCcccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~  224 (535)
                      ++||+|||+|.||.++|..|+++| ++|++||++++..++..+..    +...+.|             + .+ +..+.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~----~~~~~~g-------------~-~~~s~~e~~   85 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALR----ARAAELG-------------V-EPLDDVAGI   85 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHH----HHHHHTT-------------C-EEESSGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHH----HHHHHCC-------------C-CCCCHHHHH
Confidence            468999999999999999999999 99999999973211111100    0111222             1 23 334567


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcC-CCCcEEeecccCCC--CCCCEEEEE
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSPA--HVMPLLEIV  298 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P~--~~~~lveiv  298 (535)
                      ++||+||.|||++...  +.+.++.+.++++++|++.++ .++.   .+.+.+. ...+|+....+.|.  ....+..++
T Consensus        86 ~~aDvVi~avp~~~~~--~~~~~i~~~l~~~~ivv~~st-~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~v  162 (317)
T 4ezb_A           86 ACADVVLSLVVGAATK--AVAASAAPHLSDEAVFIDLNS-VGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILV  162 (317)
T ss_dssp             GGCSEEEECCCGGGHH--HHHHHHGGGCCTTCEEEECCS-CCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEE
T ss_pred             hcCCEEEEecCCHHHH--HHHHHHHhhcCCCCEEEECCC-CCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEE
Confidence            8999999999977554  455888889999998876554 4333   4444442 22345443222232  234566677


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCceEEeCCcccc-----hhhhhHH----HHHHHHHHHHH-cCCCHHHHHHHHHhc
Q 009395          299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAITKF  364 (535)
Q Consensus       299 ~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~-----i~nri~~----~~~~ea~~l~~-~G~~~~~ID~a~~g~  364 (535)
                      .++.   +  +.++++++.+|+.++.+++.+|.     ++++++.    ..++|++.+.+ .|++++.++.+..+.
T Consensus       163 gg~~---~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~  233 (317)
T 4ezb_A          163 AGRR---A--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETF  233 (317)
T ss_dssp             ESTT---H--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred             eCCh---H--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            7753   2  78899999999999999864442     3444433    45899999986 689986666555443

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.55  E-value=6.1e-14  Score=139.33  Aligned_cols=159  Identities=16%  Similarity=0.179  Sum_probs=120.4

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009395          145 RRVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-  221 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  221 (535)
                      ++++||+|||+|.||.++|..|+++  |++|++||++++.++.+.           +.|...           ..++++ 
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~~-----------~~~~~~~   61 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIAL-----------ERGIVD-----------EATADFK   61 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHH-----------HTTSCS-----------EEESCTT
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH-----------HcCCcc-----------cccCCHH
Confidence            3467999999999999999999988  679999999998876542           122210           123444 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhh-cCCCceeeecCCcCc--HHHHHhhcCC-CCcEEeeccc------CCCC-
Q 009395          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFF------SPAH-  290 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~------~P~~-  290 (535)
                      +.+++||+||+|+|..  ...+++.++.+. ++++++|++.+++..  .+.+.+.++. ..++++.||+      .|.. 
T Consensus        62 ~~~~~aDvVilavp~~--~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a  139 (290)
T 3b1f_A           62 VFAALADVIILAVPIK--KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAA  139 (290)
T ss_dssp             TTGGGCSEEEECSCHH--HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSC
T ss_pred             HhhcCCCEEEEcCCHH--HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHh
Confidence            4578999999999864  347888999888 888888875544322  2566666654 6789999998      4443 


Q ss_pred             -----CCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          291 -----VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       291 -----~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                           .+..+.+++...++++..+.+.++++.+|..++.+++
T Consensus       140 ~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~  181 (290)
T 3b1f_A          140 NVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA  181 (290)
T ss_dssp             CTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred             hHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence                 2456788888888899999999999999998888763

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.55  E-value=1.7e-13  Score=133.77  Aligned_cols=185  Identities=14%  Similarity=0.104  Sum_probs=129.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      ++||+|||+|.||..++..|.+.|++|++||+++++++...+.          .|             +...+++ +.++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~----------~g-------------~~~~~~~~~~~~   59 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------LA-------------LPYAMSHQDLID   59 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------HT-------------CCBCSSHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHH----------cC-------------CEeeCCHHHHHh
Confidence            3689999999999999999999999999999999887654321          02             1223344 3467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCC-EEEEEeCCCCC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQTS  304 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~~~ts  304 (535)
                      ++|+||+|+|..  ...+++.+    +.+++++++.+++++++.+.+.++...+++..||..|..... .+.++++..++
T Consensus        60 ~~D~Vi~~v~~~--~~~~v~~~----l~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~  133 (259)
T 2ahr_A           60 QVDLVILGIKPQ--LFETVLKP----LHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS  133 (259)
T ss_dssp             TCSEEEECSCGG--GHHHHHTT----SCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred             cCCEEEEEeCcH--hHHHHHHH----hccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence            999999999843  34455544    347778888888899988888776556888888887876544 56677888889


Q ss_pred             HHHHHHHHHHHHhcCCceEEeCCc-ccch------hhhhHHHHHHHHH--HHHHcCCCHHHHHHHHH
Q 009395          305 PQVIVDLLDIGKKIKKTPIVVGNC-TGFA------VNRMFFPYTQAAF--LLVERGTDLYLIDRAIT  362 (535)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~i~v~d~-~G~i------~nri~~~~~~ea~--~l~~~G~~~~~ID~a~~  362 (535)
                      ++.++.++++++.+| .++.+++. ...+      .+..++.+. +++  .+...|++++++-.++.
T Consensus       134 ~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~-~~la~~~~~~Gl~~~~~~~~~~  198 (259)
T 2ahr_A          134 QELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFI-EALAKAGVKNGIPKAKALEIVT  198 (259)
T ss_dssp             HHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHH-HHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHH
Confidence            999999999999999 56777642 1111      111222222 222  13456777777666654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.55  E-value=1.5e-13  Score=140.06  Aligned_cols=174  Identities=10%  Similarity=0.089  Sum_probs=120.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      .+||+|||+|.||.++|..|+++|++|++||+++++++.+.           +.|             +...++++ .++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~-----------~~g-------------~~~~~s~~e~~~   77 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALE-----------REG-------------IAGARSIEEFCA   77 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------TTT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------HCC-------------CEEeCCHHHHHh
Confidence            47899999999999999999999999999999999876543           122             22334443 356


Q ss_pred             CC---CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--HHHhhc-CCCCcEEeecccCCCC---CCCEEE
Q 009395          226 DV---DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERT-YSKDRIVGAHFFSPAH---VMPLLE  296 (535)
Q Consensus       226 ~a---DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~-~~~~r~ig~h~~~P~~---~~~lve  296 (535)
                      +|   |+||.|||.+  ...+++.++.+.++++++|++.+++.+..  .+.+.+ ....+|++...+.++.   .+. ..
T Consensus        78 ~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-~i  154 (358)
T 4e21_A           78 KLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CL  154 (358)
T ss_dssp             HSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC-EE
T ss_pred             cCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC-ee
Confidence            66   9999999987  45678899999999999988766655433  344444 2233455432222111   133 33


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcC--------------------CceEEeCC-cccch---hhhhHH----HHHHHHHHHH
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIK--------------------KTPIVVGN-CTGFA---VNRMFF----PYTQAAFLLV  348 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lG--------------------k~~i~v~d-~~G~i---~nri~~----~~~~ea~~l~  348 (535)
                      ++.+   +++.++.++++++.+|                    +.++++++ ..|..   +++.+.    ..++|++.+.
T Consensus       155 m~GG---~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la  231 (358)
T 4e21_A          155 MIGG---EKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNIL  231 (358)
T ss_dssp             EEES---CHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecC---CHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344   6899999999999999                    56778875 34543   344332    3478999998


Q ss_pred             Hc
Q 009395          349 ER  350 (535)
Q Consensus       349 ~~  350 (535)
                      +.
T Consensus       232 ~~  233 (358)
T 4e21_A          232 HH  233 (358)
T ss_dssp             HT
T ss_pred             Hh
Confidence            85

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.54  E-value=2.8e-13  Score=133.79  Aligned_cols=155  Identities=14%  Similarity=0.157  Sum_probs=115.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +||+|||+|.||.++|..|.++|++|++||++++.++.+.           +.|...           ..+++++++.+|
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g~~~-----------~~~~~~~~~~~~   58 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLVD-----------EAGQDLSLLQTA   58 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGGTTC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------hCCCCc-----------cccCCHHHhCCC
Confidence            4799999999999999999999999999999998876542           122110           123445444899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCC------C------CCCEE
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPA------H------VMPLL  295 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~------~------~~~lv  295 (535)
                      |+||+|+|.  ....+++.++.+.++++++|++. ++.+...+........++++.||+.+.      +      ....+
T Consensus        59 D~vi~av~~--~~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~  135 (279)
T 2f1k_A           59 KIIFLCTPI--QLILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY  135 (279)
T ss_dssp             SEEEECSCH--HHHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred             CEEEEECCH--HHHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcE
Confidence            999999985  35678889999989889988765 555544333322222389999987521      1      23467


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                      .+++++.++++..+.+.++++.+|..++.+++
T Consensus       136 ~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  167 (279)
T 2f1k_A          136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLCTP  167 (279)
T ss_dssp             EEEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            78888888999999999999999998888875

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.54  E-value=2.8e-14  Score=143.68  Aligned_cols=189  Identities=16%  Similarity=0.161  Sum_probs=133.7

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      .++||+|||+|.||..+|..|+++|++|++||++++.++...           +.|.             ...++. +.+
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g~-------------~~~~~~~~~~   84 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI-----------QEGA-------------RLGRTPAEVV   84 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHH-----------HTTC-------------EECSCHHHHH
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----------HcCC-------------EEcCCHHHHH
Confidence            357899999999999999999999999999999988765432           1121             122333 446


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHH---HhhcCCCceeeecCCcC--cHHHHHhhcC-CCCcEEeecccCCC---CCCCEE
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADL---EKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFFSPA---HVMPLL  295 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l---~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~r~ig~h~~~P~---~~~~lv  295 (535)
                      ++||+||+|+|+...+ +.++.++   .+.+.++++|++.+++.  ....+.+.+. .+.++++.+++.++   ..+.++
T Consensus        85 ~~~DvVi~av~~~~~~-~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~  163 (316)
T 2uyy_A           85 STCDITFACVSDPKAA-KDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLV  163 (316)
T ss_dssp             HHCSEEEECCSSHHHH-HHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEE
T ss_pred             hcCCEEEEeCCCHHHH-HHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEE
Confidence            7899999999965554 3444433   36677888776544332  2345666553 45678887665422   235566


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-cc----chhhhh---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TG----FAVNRM---FFPYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G----~i~nri---~~~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      .++.+   +++.++.+.++++.+|+.++++++. .+    .+.|.+   +..+++|++.+.+ .|+++++++.++.
T Consensus       164 ~~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~  236 (316)
T 2uyy_A          164 ILAAG---DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILN  236 (316)
T ss_dssp             EEEEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             EEeCC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            67666   5788999999999999988888652 22    244554   3456899999876 6899999998887

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.53  E-value=2.4e-14  Score=151.35  Aligned_cols=107  Identities=17%  Similarity=0.230  Sum_probs=97.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHH
Q 009395          302 QTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLAD  375 (535)
Q Consensus       302 ~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D  375 (535)
                      .+++++.+.+.++...+|+.++.+  .+|+++||++.++++||++++++|+  +++|||.+|+ |+|||+   |||+++|
T Consensus       331 ~~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D  408 (463)
T 1zcj_A          331 KPDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAA  408 (463)
T ss_dssp             EECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHH
Confidence            468899998888888888665543  3799999999999999999999998  5999999999 999998   9999999


Q ss_pred             HhchHHHHHHHHHHHHhCCC--CCccCccHHHHHHCC
Q 009395          376 LVGFGVAIATGMQFIENFPE--RTYKSMIIPIMQEDK  410 (535)
Q Consensus       376 ~~Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~~~~G  410 (535)
                      .+|+|+++++++.|++.+++  ++.|+++|++|+++|
T Consensus       409 ~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G  445 (463)
T 1zcj_A          409 SVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQG  445 (463)
T ss_dssp             HHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTT
T ss_pred             HhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcC
Confidence            99999999999999999998  677999999999997

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.53  E-value=4.9e-13  Score=132.16  Aligned_cols=155  Identities=15%  Similarity=0.163  Sum_probs=116.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      |+||+|||+|.||.++|..|.++|+  +|++||++++.++.+.           +.|...           ..++++ +.
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-----------~~g~~~-----------~~~~~~~~~   58 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIAKV   58 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGG
T ss_pred             CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-----------HCCCcc-----------cccCCHHHH
Confidence            3689999999999999999999999  9999999998876542           223210           123344 55


Q ss_pred             cc-CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc--HHHHHhhcCCCCcEEeecccCCCC----------
Q 009395          224 FK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH----------  290 (535)
Q Consensus       224 ~~-~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~----------  290 (535)
                      ++ +||+||+|+|..  ...+++.++.+.++++++|++.+++..  ...+.+.++.  ++++.||+.+..          
T Consensus        59 ~~~~aDvVilavp~~--~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~  134 (281)
T 2g5c_A           59 EDFSPDFVMLSSPVR--TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDN  134 (281)
T ss_dssp             GGTCCSEEEECSCHH--HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSS
T ss_pred             hcCCCCEEEEcCCHH--HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhH
Confidence            78 999999999865  446788888888988887765444332  3455665542  489999876421          


Q ss_pred             --CCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       291 --~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                        .+..+.++++..++++..+.+.++++.+|..++.+++
T Consensus       135 l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  173 (281)
T 2g5c_A          135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP  173 (281)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred             HhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence              2445778888788999999999999999998888874

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.52  E-value=8.2e-14  Score=139.10  Aligned_cols=187  Identities=17%  Similarity=0.153  Sum_probs=131.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      .+||+|||+|.||..++..|+++|++|++||++++.++...           +.|             +...+++ +.+.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~   59 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVV-----------AQG-------------AQACENNQKVAA   59 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------TTT-------------CEECSSHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HCC-------------CeecCCHHHHHh
Confidence            36899999999999999999999999999999998876542           112             2223344 3467


Q ss_pred             CCCEEEEeccCChHHHHHHHH---HHHhhcCCCceeeecCCcC--cHHHHHhhcCC-CCcEEeecccCCCC----CCCEE
Q 009395          226 DVDMVIEAIIENVSLKQQIFA---DLEKYCPPHCILASNTSTI--DLNLIGERTYS-KDRIVGAHFFSPAH----VMPLL  295 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~---~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~-~~r~ig~h~~~P~~----~~~lv  295 (535)
                      ++|+||+|+|.+..++ .++.   ++.+.++++++|++.+++.  +...+.+.+.. ..++++. |..+..    ...+.
T Consensus        60 ~~D~vi~~vp~~~~~~-~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~  137 (301)
T 3cky_A           60 ASDIIFTSLPNAGIVE-TVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAGTLT  137 (301)
T ss_dssp             HCSEEEECCSSHHHHH-HHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHTCEE
T ss_pred             CCCEEEEECCCHHHHH-HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeE
Confidence            8999999998765554 4443   7778888999988877766  34566665532 2344432 222111    12344


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-cccch----hhhh---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA----VNRM---FFPYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~i----~nri---~~~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      .++.+   +++.++.+.++++.+|..++++++ ..|..    .|.+   +...++|++.+.. .|+++++++.++.
T Consensus       138 ~~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  210 (301)
T 3cky_A          138 IMVGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIG  210 (301)
T ss_dssp             EEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             EEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            45554   688999999999999998887764 34432    4444   2346899988875 6899999988876

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=99.51  E-value=2e-14  Score=140.09  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=90.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.+++++++..+ |                                   
T Consensus       159 llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  202 (258)
T 4fzw_A          159 MVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHS-P-----------------------------------  202 (258)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             HHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+|+..
T Consensus       203 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  256 (258)
T 4fzw_A          203 LALQAAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFK  256 (258)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence            266679999999999999999999999999999999999999999999988653

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.51  E-value=1.9e-13  Score=133.58  Aligned_cols=147  Identities=16%  Similarity=0.160  Sum_probs=112.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC----CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009395          147 VKKVAILGGGLMGSGIATALILSN----YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-  221 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G----~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  221 (535)
                      .+||+|||+|.||+++|..|+++|    ++|++||++++.                 .|             +...++. 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~   53 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNE   53 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHH
Confidence            458999999999999999999999    799999998764                 11             1223333 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCC-EEEEEeC
Q 009395          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRT  300 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~  300 (535)
                      +.+++||+||+|+|+.  ...+++.++.+.+ +++++++.+++++++.+.+.++...+++...|..|..... ...++++
T Consensus        54 ~~~~~~D~vi~~v~~~--~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~  130 (262)
T 2rcy_A           54 ELARHCDIIVCAVKPD--IAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSN  130 (262)
T ss_dssp             HHHHHCSEEEECSCTT--THHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEEC
T ss_pred             HHHhcCCEEEEEeCHH--HHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeC
Confidence            4567899999999954  5678888888888 5667778899999988888775543555444444544433 4446678


Q ss_pred             CCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          301 NQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       301 ~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                      +.++++.++.+.++++.+|+ ++.+++
T Consensus       131 ~~~~~~~~~~~~~ll~~~G~-~~~~~~  156 (262)
T 2rcy_A          131 KNVNSTDKKYVNDIFNSCGI-IHEIKE  156 (262)
T ss_dssp             TTCCHHHHHHHHHHHHTSEE-EEECCG
T ss_pred             CCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence            77899999999999999997 777763

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=99.51  E-value=2.3e-14  Score=139.58  Aligned_cols=98  Identities=20%  Similarity=0.159  Sum_probs=90.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.+++++++..+ |                                   
T Consensus       155 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  198 (254)
T 3hrx_A          155 LLLLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGP-T-----------------------------------  198 (254)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HhhcCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccc-h-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.+...+++++++.|...|..++.|+|+++++++|++||+|+..
T Consensus       199 ~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  252 (254)
T 3hrx_A          199 RAYALTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQ  252 (254)
T ss_dssp             HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence            256678999999999999999999999999999999999999999999988653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.50  E-value=6.2e-13  Score=135.60  Aligned_cols=168  Identities=14%  Similarity=0.120  Sum_probs=115.4

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      ..+||+|||+|.||.++|..|+++|++|++||++++.++...+.-       .....+...   ....++..++++ +.+
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~-------~~~~~l~g~---~l~~~i~~t~d~~ea~   97 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEG-------VNNRYLPNY---PFPETLKAYCDLKASL   97 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHS-------SBTTTBTTC---CCCTTEEEESCHHHHH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC-------CCcccCCCC---ccCCCeEEECCHHHHH
Confidence            356899999999999999999999999999999999876654210       000000000   011245666677 467


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH------HHHhhcCCCCcEEeecccCCCC------CC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN------LIGERTYSKDRIVGAHFFSPAH------VM  292 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~------~l~~~~~~~~r~ig~h~~~P~~------~~  292 (535)
                      ++||+||+|||.  ...+++++++.+++++++++++.+.++.+.      .+.+.++. .++.-  ...|.+      ..
T Consensus        98 ~~aDvVilaVp~--~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~v--lsgP~~a~ev~~g~  172 (356)
T 3k96_A           98 EGVTDILIVVPS--FAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMAV--ISGPSLATEVAANL  172 (356)
T ss_dssp             TTCCEEEECCCH--HHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEEE--EESSCCHHHHHTTC
T ss_pred             hcCCEEEECCCH--HHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEEE--EECccHHHHHHcCC
Confidence            899999999985  467899999999999999999888877664      34444442 11110  113322      12


Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                      +...++.+  .+++..+.++++|...+..++...|..|
T Consensus       173 pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g  208 (356)
T 3k96_A          173 PTAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIG  208 (356)
T ss_dssp             CEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHH
T ss_pred             CeEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHH
Confidence            23223333  3688999999999999988888887544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.50  E-value=6.2e-14  Score=139.65  Aligned_cols=183  Identities=21%  Similarity=0.226  Sum_probs=126.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      +||+|||+|.||.++|..|+++|++|++||+++++++.+.           +.|             +..+++. +.+++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~   56 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQ-----------DAG-------------EQVVSSPADVAEK   56 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHH-----------TTT-------------CEECSSHHHHHHH
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CeecCCHHHHHhc
Confidence            3799999999999999999999999999999998776542           112             2233444 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHH---HHhhcCCCceeeecCCcCcHHHHHh---hcCCCCcEEeeccc-CCCCCC------C
Q 009395          227 VDMVIEAIIENVSLKQQIFAD---LEKYCPPHCILASNTSTIDLNLIGE---RTYSKDRIVGAHFF-SPAHVM------P  293 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~---l~~~~~~~~ii~s~tS~~~~~~l~~---~~~~~~r~ig~h~~-~P~~~~------~  293 (535)
                      ||+||+|+|.+..+ +.++.+   +.+.+++++++++ +|++++..+..   .+..  +  +.+|. .|...+      +
T Consensus        57 ~Dvvi~~vp~~~~~-~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~--~--g~~~~~~p~~~g~~~a~~~  130 (296)
T 2gf2_A           57 ADRIITMLPTSINA-IEAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEK--M--GAVFMDAPVSGGVGAARSG  130 (296)
T ss_dssp             CSEEEECCSSHHHH-HHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHH--T--TCEEEECCEESHHHHHHHT
T ss_pred             CCEEEEeCCCHHHH-HHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH--c--CCEEEEcCCCCChhHHhcC
Confidence            99999999865544 445554   3346678888888 88888765443   2321  1  22332 233211      2


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-cccc---hhhhhHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       294 lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~---i~nri~~----~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      .+.++.+  .+++.++.+.++++.+|+.++.+++ ..|.   +.|+.+.    .+++|++.+.. .|+++++++.++.
T Consensus       131 ~~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~  206 (296)
T 2gf2_A          131 NLTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN  206 (296)
T ss_dssp             CEEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             cEEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            2334443  3678899999999999998888765 2222   3455543    46899999876 6899999999877

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.49  E-value=8e-14  Score=132.82  Aligned_cols=154  Identities=18%  Similarity=0.249  Sum_probs=114.2

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      +.++||+|||+|.||.++|..|+++|++|++ +|+++++++...+.          .|.            ....++.+.
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~----------~g~------------~~~~~~~~~   78 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDR----------FGA------------SVKAVELKD   78 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHH----------HTT------------TEEECCHHH
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHH----------hCC------------CcccChHHH
Confidence            4568999999999999999999999999999 99999887654321          111            112344566


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--------------cHHHHHhhcCCCCcEEeecccCCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--------------DLNLIGERTYSKDRIVGAHFFSPA  289 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--------------~~~~l~~~~~~~~r~ig~h~~~P~  289 (535)
                      +.++|+||+|+|  +....++++++.+ + +++++++.+.++              +.+.+++.++ ..+++..+++.|.
T Consensus        79 ~~~aDvVilavp--~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~  153 (220)
T 4huj_A           79 ALQADVVILAVP--YDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPA  153 (220)
T ss_dssp             HTTSSEEEEESC--GGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCH
T ss_pred             HhcCCEEEEeCC--hHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCH
Confidence            889999999998  4466788887766 4 467888888776              4567777775 4578887766554


Q ss_pred             CC---------CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          290 HV---------MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       290 ~~---------~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                      ..         .+...++.+  .+++..+.++++++.+|+.++.+++
T Consensus       154 ~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G~  198 (220)
T 4huj_A          154 AVLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLGT  198 (220)
T ss_dssp             HHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             HHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeCC
Confidence            22         123344444  3689999999999999999999875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.49  E-value=3.1e-13  Score=141.41  Aligned_cols=204  Identities=15%  Similarity=0.152  Sum_probs=133.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHh--hhcccccccCc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEK--TISLLTGVLDY-ESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~--~~~~i~~~~~~-~~~  224 (535)
                      -+|+|||+|.||.++|.+|+++|++|++||+++++++...+.....+    +.| + .+-...  ..+++++++++ +.+
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~----epg-l-~~~~~~~~~~g~l~~ttd~~ea~   82 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIY----EPG-L-DALVASNVKAGRLSFTTDLAEGV   82 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSC----CTT-H-HHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCcc----CCC-H-HHHHHhhcccCCEEEECCHHHHH
Confidence            47999999999999999999999999999999998876543210000    000 0 000000  12467788888 578


Q ss_pred             cCCCEEEEeccCChH---------HHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcC--CC--CcEEeecccCC
Q 009395          225 KDVDMVIEAIIENVS---------LKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTY--SK--DRIVGAHFFSP  288 (535)
Q Consensus       225 ~~aDlVI~avpe~~~---------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~--~~--~r~ig~h~~~P  288 (535)
                      ++||+||.|||....         ..+++++.+.+.+++++++++ .||+++.   ++...+.  .+  .-.+..   +|
T Consensus        83 ~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~-~STv~pgtt~~l~~~l~e~~~~~d~~v~~---~P  158 (446)
T 4a7p_A           83 KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVT-KSTVPVGTGDEVERIIAEVAPNSGAKVVS---NP  158 (446)
T ss_dssp             TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEE-CSCCCTTHHHHHHHHHHHHSTTSCCEEEE---CC
T ss_pred             hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCCCchHHHHHHHHHHHhCCCCCceEEe---Cc
Confidence            999999999976542         467888999999999998875 4566654   3333221  11  111111   34


Q ss_pred             CCC--CC-------EEEEEeCCCCCHHHHHHHHHHHHhcCCc---eEEeCCcc-c---chhhhhHH----HHHHHHHHHH
Q 009395          289 AHV--MP-------LLEIVRTNQTSPQVIVDLLDIGKKIKKT---PIVVGNCT-G---FAVNRMFF----PYTQAAFLLV  348 (535)
Q Consensus       289 ~~~--~~-------lveiv~~~~ts~e~~~~~~~l~~~lGk~---~i~v~d~~-G---~i~nri~~----~~~~ea~~l~  348 (535)
                      ...  +.       ...++-|. .+++..+.++++++.+++.   ++.+++.. +   -++++++.    +++||+..+.
T Consensus       159 e~a~eG~a~~d~~~p~~ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~  237 (446)
T 4a7p_A          159 EFLREGAAIEDFKRPDRVVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLC  237 (446)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhccCCCEEEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322  11       11233331 3578899999999998875   57776532 2   24455544    4589999998


Q ss_pred             H-cCCCHHHHHHHHH
Q 009395          349 E-RGTDLYLIDRAIT  362 (535)
Q Consensus       349 ~-~G~~~~~ID~a~~  362 (535)
                      + .|++++++-.++.
T Consensus       238 ~~~GiD~~~v~~~~~  252 (446)
T 4a7p_A          238 EQVGADVQEVSRGIG  252 (446)
T ss_dssp             HHTTCCHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHh
Confidence            6 6999999999886

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=99.49  E-value=3.6e-14  Score=139.44  Aligned_cols=98  Identities=20%  Similarity=0.205  Sum_probs=88.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       175 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  218 (274)
T 4fzw_C          175 LALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQP-T-----------------------------------  218 (274)
T ss_dssp             HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             HHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+|+..
T Consensus       219 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f~  272 (274)
T 4fzw_C          219 FGLGLIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFT  272 (274)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCCC
T ss_pred             HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence            266679999999999999999999999999999999999999999999988753

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.49  E-value=2.2e-12  Score=129.33  Aligned_cols=168  Identities=17%  Similarity=0.209  Sum_probs=113.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc---
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES---  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---  223 (535)
                      ++||+|||+|.||..+|..|+++|++|++||++++.++...+           .|............++..+++.+.   
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~   71 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRK-----------NGLIADFNGEEVVANLPIFSPEEIDHQ   71 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------HCEEEEETTEEEEECCCEECGGGCCTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh-----------CCEEEEeCCCeeEecceeecchhhccc
Confidence            468999999999999999999999999999999988765432           111000000000011222222222   


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEEeecc-c-----CCCC---C-C
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHF-F-----SPAH---V-M  292 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h~-~-----~P~~---~-~  292 (535)
                      ++++|+||.|+|++  ...++++++.+.+++++++++.++++.. +.+++.++ +.++++.|. .     .|..   . .
T Consensus        72 ~~~~d~vi~~v~~~--~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~~  148 (316)
T 2ew2_A           72 NEQVDLIIALTKAQ--QLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLGD  148 (316)
T ss_dssp             SCCCSEEEECSCHH--HHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECSC
T ss_pred             CCCCCEEEEEeccc--cHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEecC
Confidence            34899999999854  4578889999999999999888888776 45666554 346774433 2     2211   1 1


Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC  328 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~  328 (535)
                      ..+.++.....+++..+.+.++++.+|..+.+++|.
T Consensus       149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~  184 (316)
T 2ew2_A          149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNV  184 (316)
T ss_dssp             CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTH
T ss_pred             CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhH
Confidence            234455555567899999999999999888777663

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.49  E-value=3.7e-13  Score=139.82  Aligned_cols=197  Identities=11%  Similarity=0.084  Sum_probs=132.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      .|..|||+|.||.++|.+|+++|++|++||+++++++...+.        +...+.+.+.            .+++.+++
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~------------~g~l~~tt   79 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLS------------SGKLKVST   79 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEEES
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcc------------cCceEEeC
Confidence            589999999999999999999999999999999998876532        1111111111            24566776


Q ss_pred             CcccccCCCEEEEeccCChH----------HHHHHHHHHHhhcCCCceeeecCCcCcHHH---HHhhc-C-CCCcE-Eee
Q 009395          220 DYESFKDVDMVIEAIIENVS----------LKQQIFADLEKYCPPHCILASNTSTIDLNL---IGERT-Y-SKDRI-VGA  283 (535)
Q Consensus       220 ~~~~~~~aDlVI~avpe~~~----------~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~---l~~~~-~-~~~r~-ig~  283 (535)
                      +   +++||+||.|||.+..          ......+.+.++++++++++ ..||+++..   +...+ . ...++ ...
T Consensus        80 d---~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV-~~STV~pgtt~~v~~~i~e~~g~~~~~d~  155 (431)
T 3ojo_A           80 T---PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTII-VESTIAPKTMDDFVKPVIENLGFTIGEDI  155 (431)
T ss_dssp             S---CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEE-ECSCCCTTHHHHTHHHHHHTTTCCBTTTE
T ss_pred             c---hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEE-EecCCChhHHHHHHHHHHHHcCCCcCCCe
Confidence            6   4589999999986542          34566778999999999776 456776643   22211 1 11110 001


Q ss_pred             cc-cCCCCCCC---------EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-ccc---hhhhhHH----HHHHHHH
Q 009395          284 HF-FSPAHVMP---------LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF---AVNRMFF----PYTQAAF  345 (535)
Q Consensus       284 h~-~~P~~~~~---------lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G~---i~nri~~----~~~~ea~  345 (535)
                      ++ ++|....+         ...++.|.  +++..+.++++++.+++.++++++. .+.   ++|+++.    +++||+.
T Consensus       156 ~v~~~Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~  233 (431)
T 3ojo_A          156 YLVHCPERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELT  233 (431)
T ss_dssp             EEEECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 25533211         11345443  6899999999999999888777642 232   4566654    4589999


Q ss_pred             HHHH-cCCCHHHHHHHHH
Q 009395          346 LLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       346 ~l~~-~G~~~~~ID~a~~  362 (535)
                      .+.+ .|+|++++-+++.
T Consensus       234 ~l~e~~GiD~~~v~~~~~  251 (431)
T 3ojo_A          234 KICNNLNINVLDVIEMAN  251 (431)
T ss_dssp             HHHHHTTCCHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHc
Confidence            9987 6999999998885

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.49  E-value=4e-13  Score=139.33  Aligned_cols=198  Identities=18%  Similarity=0.238  Sum_probs=131.6

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh----hcccccccC
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT----ISLLTGVLD  220 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~----~~~i~~~~~  220 (535)
                      ..++||+|||+|.||.++|..|++ |++|++||+++++++.+.+...          .+.....+..    ..+++++++
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~----------~i~e~~l~~ll~~~~~~l~~ttd  102 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKIS----------PIVDKEIQEYLAEKPLNFRATTD  102 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCC----------SSCCHHHHHHHHHSCCCEEEESC
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCC----------ccccccHHHHHhhccCCeEEEcC
Confidence            346799999999999999999998 9999999999999887653210          0111111111    135777888


Q ss_pred             c-ccccCCCEEEEeccCCh---------HHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeecccC
Q 009395          221 Y-ESFKDVDMVIEAIIENV---------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFFS  287 (535)
Q Consensus       221 ~-~~~~~aDlVI~avpe~~---------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~  287 (535)
                      + +.+++||+||+|||++.         .....+.+.+.+ ++++++++ ..||+++.   ++.+.+..  .  ++.| +
T Consensus       103 ~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV-~~STv~pgtt~~l~~~l~~--~--~v~~-s  175 (432)
T 3pid_A          103 KHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMI-IKSTIPVGFTRDIKERLGI--D--NVIF-S  175 (432)
T ss_dssp             HHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEE-ECSCCCTTHHHHHHHHHTC--C--CEEE-C
T ss_pred             HHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEE-EeCCCChHHHHHHHHHHhh--c--cEee-c
Confidence            7 56899999999999863         346677888888 88898876 46667654   44444432  2  2222 6


Q ss_pred             CCCCCCE------E---EEEeCCCCCHHHHHHHHHHHHh--cCC-ceEEeCCc-ccc---hhhhhHH----HHHHHHHHH
Q 009395          288 PAHVMPL------L---EIVRTNQTSPQVIVDLLDIGKK--IKK-TPIVVGNC-TGF---AVNRMFF----PYTQAAFLL  347 (535)
Q Consensus       288 P~~~~~l------v---eiv~~~~ts~e~~~~~~~l~~~--lGk-~~i~v~d~-~G~---i~nri~~----~~~~ea~~l  347 (535)
                      |....+.      +   .++.|.  +++..+.+.+++..  ++. .++.+.+. .+.   ++++++.    +++||+..+
T Consensus       176 Pe~~~~G~A~~~~l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~l  253 (432)
T 3pid_A          176 PEFLREGRALYDNLHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSY  253 (432)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCcchhhhcccCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6543211      1   234442  35677888888876  443 35555542 222   3455543    458999999


Q ss_pred             HH-cCCCHHHHHHHHH
Q 009395          348 VE-RGTDLYLIDRAIT  362 (535)
Q Consensus       348 ~~-~G~~~~~ID~a~~  362 (535)
                      .+ .|++++++-+++.
T Consensus       254 ae~~GiD~~~v~~~~~  269 (432)
T 3pid_A          254 AESQGLNSKQIIEGVC  269 (432)
T ss_dssp             HHHTTCCHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHc
Confidence            86 6999999999885

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.48  E-value=3.4e-13  Score=134.49  Aligned_cols=186  Identities=18%  Similarity=0.244  Sum_probs=128.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      +||+|||+|.||..++..|+++|++|++||++++.++...+           .|             +...+++ +.+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~   61 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ   61 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence            48999999999999999999999999999999988765431           12             2233444 34678


Q ss_pred             CCEEEEeccCChHHHHHHH---HHHHhhcCCCceeeecCCcCc--HHHHHhhcCC-CCcEEeecccC--CC-C-CCCEEE
Q 009395          227 VDMVIEAIIENVSLKQQIF---ADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFFS--PA-H-VMPLLE  296 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~---~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~~--P~-~-~~~lve  296 (535)
                      ||+||+|+|....++ .++   +++.+.++++++|++.+++.+  ...+.+.+.. ...++.. |+.  |+ . ...+..
T Consensus        62 ~D~vi~~v~~~~~~~-~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-pv~~~~~~~~~~~~~~  139 (299)
T 1vpd_A           62 CDVIITMLPNSPHVK-EVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDA-PVSGGEPKAIDGTLSV  139 (299)
T ss_dssp             CSEEEECCSSHHHHH-HHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEEC-CEESHHHHHHHTCEEE
T ss_pred             CCEEEEECCCHHHHH-HHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEe-cCCCCHhHHhcCCEEE
Confidence            999999999655444 445   567788889998876655543  2456665532 2234333 211  11 0 123344


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-cccch---hhhhHH----HHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGFA---VNRMFF----PYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~i---~nri~~----~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      ++.+   +++.++.+.++++.+|..++++++ ..|..   +++.+.    ..++|++.+.+ .|+++++++.++.
T Consensus       140 ~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  211 (299)
T 1vpd_A          140 MVGG---DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIR  211 (299)
T ss_dssp             EEES---CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred             EeCC---CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4444   688999999999999998888864 34443   344443    46789988865 6899999998876

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.47  E-value=3.2e-14  Score=119.86  Aligned_cols=70  Identities=23%  Similarity=0.248  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCC
Q 009395          459 EKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQG  529 (535)
Q Consensus       459 ~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~  529 (535)
                      ..+|+||++.+++|||++|++||++ +++|||.+|++|+|||+|||.++|++|+|+++++++.++..++++
T Consensus        16 ~gfi~nRll~~~~~eA~~ll~eGva-~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~   85 (110)
T 3ctv_A           16 DKINPMDFTFVEINEAVKLVEMGVA-TPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQFGKK   85 (110)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCG
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3589999999999999999999999 999999999999999999999999999999999999999888764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.47  E-value=1e-12  Score=138.19  Aligned_cols=202  Identities=14%  Similarity=0.117  Sum_probs=133.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHh--hhcccccccCccc-
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK-FEK--TISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~--~~~~i~~~~~~~~-  223 (535)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+.....+    +.|   -.+ ...  ..+++++++++++ 
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~----e~g---l~~~l~~~~~~~~l~~t~d~~ea   75 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIY----EPG---LEKMIARNVKAGRLRFGTEIEQA   75 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCC----STT---HHHHHHHHHHTTSEEEESCHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCccc----CCC---HHHHHHhhcccCcEEEECCHHHH
Confidence            58999999999999999999999999999999998876543210000    000   000 000  0245677778764 


Q ss_pred             ccCCCEEEEeccCCh--------HHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCC--C-----C-cEEeec
Q 009395          224 FKDVDMVIEAIIENV--------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--K-----D-RIVGAH  284 (535)
Q Consensus       224 ~~~aDlVI~avpe~~--------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~--~-----~-r~ig~h  284 (535)
                      +++||+||.|||...        ....++++++.++++++++|++. ||+++.   ++...+..  +     . -.+.  
T Consensus        76 ~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~-STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~--  152 (450)
T 3gg2_A           76 VPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTK-STVPVGSYRLIRKAIQEELDKREVLIDFDIA--  152 (450)
T ss_dssp             GGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC-SCCCTTHHHHHHHHHHHHHHHTTCCCCEEEE--
T ss_pred             HhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEe-eeCCCcchHHHHHHHHHhccccCcCcceeEE--
Confidence            899999999998754        26778889999999999988654 455543   33332211  0     0 1111  


Q ss_pred             ccCCCCCC--CE--------EEEEeCCCCCHHHHHHHHHHHHhcCC--ceEEeCCccc-c---hhhhhHH----HHHHHH
Q 009395          285 FFSPAHVM--PL--------LEIVRTNQTSPQVIVDLLDIGKKIKK--TPIVVGNCTG-F---AVNRMFF----PYTQAA  344 (535)
Q Consensus       285 ~~~P~~~~--~l--------veiv~~~~ts~e~~~~~~~l~~~lGk--~~i~v~d~~G-~---i~nri~~----~~~~ea  344 (535)
                       ++|....  ..        ..++.+  .+++..+.++++++.+++  .++.+.+..+ .   ++++.+.    +++||+
T Consensus       153 -~~Pe~a~eG~~~~~~~~p~~ivvG~--~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~  229 (450)
T 3gg2_A          153 -SNPEFLKEGNAIDDFMKPDRVVVGV--DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDV  229 (450)
T ss_dssp             -ECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -echhhhcccchhhhccCCCEEEEEc--CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1443321  11        123333  268899999999999987  3666665322 1   3444433    458999


Q ss_pred             HHHHH-cCCCHHHHHHHHH
Q 009395          345 FLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       345 ~~l~~-~G~~~~~ID~a~~  362 (535)
                      ..+.+ .|++++++-.++.
T Consensus       230 ~~l~~~~Gid~~~v~~~~~  248 (450)
T 3gg2_A          230 ANLCERVGADVSMVRLGIG  248 (450)
T ss_dssp             HHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHc
Confidence            99986 6999999999986

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.45  E-value=7.7e-13  Score=139.39  Aligned_cols=192  Identities=13%  Similarity=0.095  Sum_probs=129.9

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc--
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES--  223 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--  223 (535)
                      ++++|+|||+|.||.+||..|+++|++|++||+++++++.+.+           .+...        .++..++++++  
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g~~g--------~~i~~~~s~~e~v   63 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAKG--------TKVVGAQSLKEMV   63 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTTT--------SSCEECSSHHHHH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------cccCC--------CceeccCCHHHHH
Confidence            4578999999999999999999999999999999998776542           11100        12333344433  


Q ss_pred             --ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--HHHhhc-CCCCcEEeecccC--C--CCCCCE
Q 009395          224 --FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERT-YSKDRIVGAHFFS--P--AHVMPL  294 (535)
Q Consensus       224 --~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~-~~~~r~ig~h~~~--P--~~~~~l  294 (535)
                        ++++|+||.|||....+ ++++.++.+.++++.+|++.+++.+.+  .+.+.+ ....+|++. |+.  |  +..++ 
T Consensus        64 ~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~-pVsGg~~gA~~G~-  140 (484)
T 4gwg_A           64 SKLKKPRRIILLVKAGQAV-DDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGS-GVSGGEEGARYGP-  140 (484)
T ss_dssp             HTBCSSCEEEECSCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE-EEESHHHHHHHCC-
T ss_pred             hhccCCCEEEEecCChHHH-HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccC-CccCCHHHHhcCC-
Confidence              34699999999976544 567899999999999888766665433  333333 222345553 221  1  11233 


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcCCce-------EEeCC-cccc---hhhhh-HH---HHHHHHHHHHHc--CCCHHHH
Q 009395          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTP-------IVVGN-CTGF---AVNRM-FF---PYTQAAFLLVER--GTDLYLI  357 (535)
Q Consensus       295 veiv~~~~ts~e~~~~~~~l~~~lGk~~-------i~v~d-~~G~---i~nri-~~---~~~~ea~~l~~~--G~~~~~I  357 (535)
                      ..++.+   +++.++.++++++.+|..+       +++++ ..|.   ++++. .+   ..++|++.+.+.  |++++++
T Consensus       141 ~im~GG---~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l  217 (484)
T 4gwg_A          141 SLMPGG---NKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEM  217 (484)
T ss_dssp             EEEEEE---CGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred             eeecCC---CHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            333344   5789999999999999876       56653 2332   23443 33   357999999875  8899999


Q ss_pred             HHHHH
Q 009395          358 DRAIT  362 (535)
Q Consensus       358 D~a~~  362 (535)
                      -.++.
T Consensus       218 ~~v~~  222 (484)
T 4gwg_A          218 AQAFE  222 (484)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88864

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.45  E-value=1.5e-13  Score=136.78  Aligned_cols=183  Identities=16%  Similarity=0.204  Sum_probs=127.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      ++||+|||+|.||..+|..|+++|++|++|| +++.++...           +.|             +...+++ +.++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~   57 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELL-----------SLG-------------AVNVETARQVTE   57 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHH-----------TTT-------------CBCCSSHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHH-----------HcC-------------CcccCCHHHHHh
Confidence            3689999999999999999999999999999 887665432           112             1223344 3478


Q ss_pred             CCCEEEEeccCChHHHHHHHH---HHHhhcCCCceeeecCCcCc--HHHHHhhcCCCCcEEeecccC-CCC-------CC
Q 009395          226 DVDMVIEAIIENVSLKQQIFA---DLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFS-PAH-------VM  292 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~---~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~-P~~-------~~  292 (535)
                      +||+||+|+|.+..+ ..++.   ++.+.++++++|++.+++.+  ...+.+.+...    |.||++ |..       ..
T Consensus        58 ~~D~vi~~vp~~~~~-~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g  132 (295)
T 1yb4_A           58 FADIIFIMVPDTPQV-EDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM----GADYLDAPVSGGEIGAREG  132 (295)
T ss_dssp             TCSEEEECCSSHHHH-HHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHT
T ss_pred             cCCEEEEECCCHHHH-HHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcC
Confidence            999999999976544 34554   67777888998886665532  34566655331    444442 322       12


Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC-cccc---hhhhhH----HHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN-CTGF---AVNRMF----FPYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d-~~G~---i~nri~----~~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      .++.++.+   +++.++.+.++++.+|..++++++ ..|.   ++++++    ...++|+..+.+ .|+++++++.++.
T Consensus       133 ~~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~  208 (295)
T 1yb4_A          133 TLSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALM  208 (295)
T ss_dssp             CEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred             CeEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            44555555   688999999999999998888864 3342   233332    246789998876 6899999998886

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=99.45  E-value=1.1e-13  Score=135.37  Aligned_cols=97  Identities=21%  Similarity=0.313  Sum_probs=89.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.|.++|++++..+ |                                   
T Consensus       166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  209 (265)
T 3kqf_A          166 LIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNG-P-----------------------------------  209 (265)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       210 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  262 (265)
T 3kqf_A          210 IAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMY  262 (265)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence            26778999999999899999999999999999999999999999999998765

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=99.44  E-value=1.1e-13  Score=135.16  Aligned_cols=98  Identities=20%  Similarity=0.280  Sum_probs=89.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       164 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  207 (263)
T 3moy_A          164 LCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMS-R-----------------------------------  207 (263)
T ss_dssp             HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++..
T Consensus       208 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~  261 (263)
T 3moy_A          208 PAGRAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFT  261 (263)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence            267789999999988899999999999999999999999999999999887653

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.44  E-value=5.5e-13  Score=141.72  Aligned_cols=191  Identities=14%  Similarity=0.121  Sum_probs=130.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-ccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~  226 (535)
                      .+|+|||+|.||.+||..|+++|++|++||+++++++...+..        ..+           ..+..++++++ +++
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~--------~~~-----------~gi~~~~s~~e~v~~   71 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANE--------AKG-----------KSIIGATSIEDFISK   71 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTT--------TTT-----------SSEECCSSHHHHHHT
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHccc--------ccC-----------CCeEEeCCHHHHHhc
Confidence            5799999999999999999999999999999999877654200        000           12334455543 444


Q ss_pred             ---CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--HHHHhhcCC-CCcEEeecccCCCC---CCCEEEE
Q 009395          227 ---VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPAH---VMPLLEI  297 (535)
Q Consensus       227 ---aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~P~~---~~~lvei  297 (535)
                         ||+||.|||....+ +++++++.+.++++++|++.+++.+.  ..+.+.+.. ..+++++..+.++.   .++  .+
T Consensus        72 l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~--~i  148 (497)
T 2p4q_A           72 LKRPRKVMLLVKAGAPV-DALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP--SL  148 (497)
T ss_dssp             SCSSCEEEECCCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             CCCCCEEEEEcCChHHH-HHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC--eE
Confidence               99999999976544 56778999999999988876665543  345554422 23455542222111   123  24


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCc------eEEeC-Ccccc----hhhhhH---HHHHHHHHHHHHc--CCCHHHHHHHH
Q 009395          298 VRTNQTSPQVIVDLLDIGKKIKKT------PIVVG-NCTGF----AVNRMF---FPYTQAAFLLVER--GTDLYLIDRAI  361 (535)
Q Consensus       298 v~~~~ts~e~~~~~~~l~~~lGk~------~i~v~-d~~G~----i~nri~---~~~~~ea~~l~~~--G~~~~~ID~a~  361 (535)
                      +.+.  +++.++.++++++.+|..      ++.++ ...|.    +.|.+.   ...++|++.+...  |++++++..++
T Consensus       149 m~gg--~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~  226 (497)
T 2p4q_A          149 MPGG--SEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVF  226 (497)
T ss_dssp             EEEE--CGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             EecC--CHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence            4432  678899999999999987      55665 33443    345554   3558999999875  89999999887


Q ss_pred             H
Q 009395          362 T  362 (535)
Q Consensus       362 ~  362 (535)
                      .
T Consensus       227 ~  227 (497)
T 2p4q_A          227 A  227 (497)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.44  E-value=6.8e-13  Score=132.33  Aligned_cols=139  Identities=21%  Similarity=0.217  Sum_probs=106.7

Q ss_pred             cceEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          147 VKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       147 ~~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      ++||+||| +|.||+++|..|+++|++|++||++++.                                    +..+.+.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~~   64 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESILA   64 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHHT
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHhc
Confidence            46899999 9999999999999999999999988642                                    0113367


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcCCCCcEEeecccCCCC----CCCEEEEEe
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAH----VMPLLEIVR  299 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~----~~~lveiv~  299 (535)
                      +||+||+|||..  ...++++++.+.++++++|++.+|+.  .++.+...+  +.++++.||+.++.    .+..+.+++
T Consensus        65 ~aDvVilavp~~--~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~~  140 (298)
T 2pv7_A           65 NADVVIVSVPIN--LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRCD  140 (298)
T ss_dssp             TCSEEEECSCGG--GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEEE
T ss_pred             CCCEEEEeCCHH--HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEec
Confidence            899999999965  46788999999899999876654432  233444443  46899999975432    244566667


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          300 TNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       300 ~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                      +.  +++.++.+.++++.+|..++.+++
T Consensus       141 ~~--~~~~~~~v~~l~~~~G~~~~~~~~  166 (298)
T 2pv7_A          141 GR--FPERYEWLLEQIQIWGAKIYQTNA  166 (298)
T ss_dssp             EE--CGGGTHHHHHHHHHTTCEEEECCH
T ss_pred             CC--CHHHHHHHHHHHHHcCCEEEECCH
Confidence            54  678899999999999998888763

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.44  E-value=9.9e-13  Score=138.16  Aligned_cols=202  Identities=14%  Similarity=0.099  Sum_probs=129.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhh------hcccccccCc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKT------ISLLTGVLDY  221 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~------~~~i~~~~~~  221 (535)
                      +||+|||+|.||.++|..|+++|++|++||+++++++...+...          .+.....+..      .+++..++++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~----------~i~e~~l~~~~~~~~~~g~l~~t~~~   70 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKS----------PIVEPGLEALLQQGRQTGRLSGTTDF   70 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCC----------SSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCC----------CcCCCCHHHHHHhhcccCceEEeCCH
Confidence            48999999999999999999999999999999998876542100          0000000110      2346677777


Q ss_pred             c-cccCCCEEEEeccCChH--------HHHHHHHHHHhhcCC---CceeeecCCcCcHH----HHHhhcCC--CCcE-Ee
Q 009395          222 E-SFKDVDMVIEAIIENVS--------LKQQIFADLEKYCPP---HCILASNTSTIDLN----LIGERTYS--KDRI-VG  282 (535)
Q Consensus       222 ~-~~~~aDlVI~avpe~~~--------~k~~v~~~l~~~~~~---~~ii~s~tS~~~~~----~l~~~~~~--~~r~-ig  282 (535)
                      + .+++||+||+|||....        ...++++++.+.+++   +++|++ .|+.++.    .+...+..  ..++ +.
T Consensus        71 ~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~t~~~l~~~l~~~~g~~~~~~  149 (436)
T 1mv8_A           71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAGVD  149 (436)
T ss_dssp             HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred             HHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE-eCCcCCCchHHHHHHHHHHhcCcccCCc
Confidence            5 58899999999987543        145677889988888   887764 4444432    23333321  1111 00


Q ss_pred             ec-ccCCCCCCCEE---------EEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc-----ccchhhhhH---HHHHHHH
Q 009395          283 AH-FFSPAHVMPLL---------EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC-----TGFAVNRMF---FPYTQAA  344 (535)
Q Consensus       283 ~h-~~~P~~~~~lv---------eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~-----~G~i~nri~---~~~~~ea  344 (535)
                      .+ .++|....+..         .++.+. .+++..+.+.++++.+|.. +.+.+.     ..++.|.+.   .++++|+
T Consensus       150 ~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~-v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~  227 (436)
T 1mv8_A          150 FGVGTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAP-IIRKTVEVAEMIKYTCNVWHAAKVTFANEI  227 (436)
T ss_dssp             BEEEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSC-EEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCC-EEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 12443322111         233332 3688999999999999984 444442     234455443   4678999


Q ss_pred             HHHHH-cCCCHHHHHHHHH
Q 009395          345 FLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       345 ~~l~~-~G~~~~~ID~a~~  362 (535)
                      ..+.+ .|+++++++.++.
T Consensus       228 ~~l~~~~Gid~~~v~~~~~  246 (436)
T 1mv8_A          228 GNIAKAVGVDGREVMDVIC  246 (436)
T ss_dssp             HHHHHHTTSCHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHhc
Confidence            99986 5899999999886

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=99.44  E-value=1.7e-13  Score=133.34  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=89.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.|.++|++++..+ |                                   
T Consensus       157 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  200 (256)
T 3trr_A          157 LALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANG-P-----------------------------------  200 (256)
T ss_dssp             HHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++..
T Consensus       201 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  254 (256)
T 3trr_A          201 LAVAATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQ  254 (256)
T ss_dssp             HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence            266679999999998999999999999999999999999999999999987653

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=99.43  E-value=1.4e-13  Score=135.34  Aligned_cols=97  Identities=24%  Similarity=0.308  Sum_probs=89.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       179 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  222 (278)
T 3h81_A          179 LILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMS-A-----------------------------------  222 (278)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       223 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f  275 (278)
T 3h81_A          223 SAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQF  275 (278)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence            26778999999999889999999999999999999999999999999988765

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.43  E-value=1.6e-12  Score=122.88  Aligned_cols=157  Identities=19%  Similarity=0.226  Sum_probs=115.1

Q ss_pred             ceEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       148 ~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      +||+||| +|.||..++..|+++|++|+++|++++..+...+.+..    .+..            ..+.. +++ +.++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~   63 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAE   63 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHh
Confidence            4799999 99999999999999999999999999887654432110    1110            11222 233 4468


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc--------------HHHHHhhcCCCCcEEeecccCCCC-
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--------------LNLIGERTYSKDRIVGAHFFSPAH-  290 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--------------~~~l~~~~~~~~r~ig~h~~~P~~-  290 (535)
                      +||+||.|+|++  ...+++.++.+.++ ++++++.+++++              .+++++.++ ..+++..|+..|.. 
T Consensus        64 ~~D~Vi~~~~~~--~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~v~~~~~~~~~~  139 (212)
T 1jay_A           64 ACDIAVLTIPWE--HAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE-SEKVVSALHTIPAAR  139 (212)
T ss_dssp             HCSEEEECSCHH--HHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT-CSCEEECCTTCCHHH
T ss_pred             cCCEEEEeCChh--hHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC-CCeEEEEccchHHHH
Confidence            899999999853  34578888877774 888888888776              577877775 36788876554322 


Q ss_pred             ------CCCEEEEEeCCCCCHHHHHHHHHHHHhc-CCceEEeCC
Q 009395          291 ------VMPLLEIVRTNQTSPQVIVDLLDIGKKI-KKTPIVVGN  327 (535)
Q Consensus       291 ------~~~lveiv~~~~ts~e~~~~~~~l~~~l-Gk~~i~v~d  327 (535)
                            ...+..+++++  +++..+.+.++++.+ |+.++.+++
T Consensus       140 ~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~  181 (212)
T 1jay_A          140 FANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP  181 (212)
T ss_dssp             HHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             hhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence                  23466677775  689999999999999 999988875

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.43  E-value=1.9e-12  Score=137.15  Aligned_cols=191  Identities=14%  Similarity=0.129  Sum_probs=131.3

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (535)
                      .-++|+|||+|.||.+||..|+++|++|++||+++++++...+..         .+           ..+..++++++ +
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~---------~~-----------~gi~~~~s~~e~v   73 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN---------PG-----------KKLVPYYTVKEFV   73 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS---------TT-----------SCEEECSSHHHHH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC---------CC-----------CCeEEeCCHHHHH
Confidence            346899999999999999999999999999999999877654210         00           12334455533 4


Q ss_pred             cC---CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--HHHHhhcC-CCCcEEeecccC--CC--CCCCE
Q 009395          225 KD---VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFS--PA--HVMPL  294 (535)
Q Consensus       225 ~~---aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~r~ig~h~~~--P~--~~~~l  294 (535)
                      ++   ||+||.|||.... .+++++++.+.++++++|++.+++.+.  ..+.+.+. ...+++++ |+.  |.  ..++ 
T Consensus        74 ~~l~~aDvVil~Vp~~~~-v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~-pv~gg~~~a~~g~-  150 (480)
T 2zyd_A           74 ESLETPRRILLMVKAGAG-TDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGT-GVSGGEEGALKGP-  150 (480)
T ss_dssp             HTBCSSCEEEECSCSSSH-HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE-EEESHHHHHHHCC-
T ss_pred             hCCCCCCEEEEECCCHHH-HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCC-ccccCHhHHhcCC-
Confidence            44   9999999997544 457788999999999988877766643  34555443 23455554 221  11  1234 


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcCCc-------eEEeCC-cccc----hhhhhH---HHHHHHHHHHHHc--CCCHHHH
Q 009395          295 LEIVRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGF----AVNRMF---FPYTQAAFLLVER--GTDLYLI  357 (535)
Q Consensus       295 veiv~~~~ts~e~~~~~~~l~~~lGk~-------~i~v~d-~~G~----i~nri~---~~~~~ea~~l~~~--G~~~~~I  357 (535)
                      . ++.+.  +++..+.++++++.+|..       +..+++ ..|.    +.|.+.   ...+.|+..+...  |++++++
T Consensus       151 ~-i~~gg--~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~  227 (480)
T 2zyd_A          151 S-IMPGG--QKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEEL  227 (480)
T ss_dssp             E-EEEES--CHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             e-EEecC--CHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            3 44442  589999999999999987       556653 2332    234443   3457999999875  9999998


Q ss_pred             HHHHH
Q 009395          358 DRAIT  362 (535)
Q Consensus       358 D~a~~  362 (535)
                      ..++.
T Consensus       228 ~~l~~  232 (480)
T 2zyd_A          228 AQTFT  232 (480)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=99.43  E-value=2.4e-13  Score=132.32  Aligned_cols=97  Identities=12%  Similarity=0.099  Sum_probs=88.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.+.++|++++..+ |                                   
T Consensus       156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  199 (255)
T 3p5m_A          156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGP-T-----------------------------------  199 (255)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       200 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  252 (255)
T 3p5m_A          200 LAFGWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNF  252 (255)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence            26678999999988889999999999999999999999999999999998764

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=99.43  E-value=2.3e-13  Score=133.22  Aligned_cols=97  Identities=24%  Similarity=0.281  Sum_probs=89.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  209 (265)
T 3swx_A          166 WMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQA-P-----------------------------------  209 (265)
T ss_dssp             HHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++.+|++||+++.
T Consensus       210 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  262 (265)
T 3swx_A          210 LGVQATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAEF  262 (265)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence            26678999999988889999999999999999999999999999999998764

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.43  E-value=5e-13  Score=141.58  Aligned_cols=203  Identities=15%  Similarity=0.214  Sum_probs=133.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHhhh-----ccccc
Q 009395          147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEKFEKTI-----SLLTG  217 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~~-----~~i~~  217 (535)
                      ++||+|||+|.||.++|..|+++  |++|++||+++++++...+            |...  ....+..+     .++..
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~------------g~~~i~e~~l~~~~~~~~~~~~~~   72 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNS------------PTLPIYEPGLKEVVESCRGKNLFF   72 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS------------SSCSSCCTTHHHHHHHHBTTTEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhC------------CCCCcCCCCHHHHHHHhhcCCEEE
Confidence            57999999999999999999999  8999999999998775421            1100  00000011     24556


Q ss_pred             ccCc-ccccCCCEEEEeccCChHH-------------HHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCC-c
Q 009395          218 VLDY-ESFKDVDMVIEAIIENVSL-------------KQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKD-R  279 (535)
Q Consensus       218 ~~~~-~~~~~aDlVI~avpe~~~~-------------k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~-r  279 (535)
                      ++++ +.+++||+||.|||.....             ...+++++.+.++++++|+ ++|++++.   .+...+.... .
T Consensus        73 t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~~g~~~~l~~~l~~~~~~  151 (467)
T 2q3e_A           73 STNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVT-EKSTVPVRAAESIRRIFDANTKP  151 (467)
T ss_dssp             ESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEE-ECSCCCTTHHHHHHHHHHHTCCT
T ss_pred             ECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEE-ECCcCCchHHHHHHHHHHHhCCC
Confidence            6666 4578999999999865432             4567788888888888775 45555443   3444332211 1


Q ss_pred             EEeec-ccCCCCCCC--EE--------EEEeCCC--CCHHHHHHHHHHHHhc-CCceEEeCCc-----ccchhhhhH---
Q 009395          280 IVGAH-FFSPAHVMP--LL--------EIVRTNQ--TSPQVIVDLLDIGKKI-KKTPIVVGNC-----TGFAVNRMF---  337 (535)
Q Consensus       280 ~ig~h-~~~P~~~~~--lv--------eiv~~~~--ts~e~~~~~~~l~~~l-Gk~~i~v~d~-----~G~i~nri~---  337 (535)
                      .+..+ .++|....+  .+        .++.++.  .+++..+.+.++++.+ |+.++++++.     .+++.|.+.   
T Consensus       152 ~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~  231 (467)
T 2q3e_A          152 NLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQR  231 (467)
T ss_dssp             TCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHH
Confidence            11111 234543322  11        2344433  3788899999999998 7777777652     334556553   


Q ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          338 FPYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       338 ~~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      .++++|+..+.+ .|++++++..++.
T Consensus       232 ia~~nE~~~l~~~~Gid~~~v~~~~~  257 (467)
T 2q3e_A          232 ISSINSISALCEATGADVEEVATAIG  257 (467)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence            356899999987 5899999999987

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=99.42  E-value=2.7e-13  Score=132.67  Aligned_cols=97  Identities=22%  Similarity=0.217  Sum_probs=89.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  209 (265)
T 3rsi_A          166 MILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNG-P-----------------------------------  209 (265)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++||+++.
T Consensus       210 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  262 (265)
T 3rsi_A          210 LAVRNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREARF  262 (265)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence            26678999999998889999999999999999999999999999999988764

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.42  E-value=1.4e-12  Score=129.24  Aligned_cols=184  Identities=15%  Similarity=0.117  Sum_probs=125.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +||+|||+|.||..+|..|++ |++|++||++++..+...+           .|.             ...+..+.+.+|
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~-----------~g~-------------~~~~~~~~~~~~   56 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQE-----------EFG-------------SEAVPLERVAEA   56 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHH-----------HHC-------------CEECCGGGGGGC
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHH-----------CCC-------------cccCHHHHHhCC
Confidence            589999999999999999999 9999999999988765431           111             112222447899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcCC-CCcEEeecccCC-CC---CCCEEEEEeC
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFFSP-AH---VMPLLEIVRT  300 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~~P-~~---~~~lveiv~~  300 (535)
                      |+||+|+|.+..+ ..+++++.+.+++++++++.++.  .....+.+.+.. ..++++. |+.+ +.   ...+..++.+
T Consensus        57 D~vi~~v~~~~~~-~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~~  134 (289)
T 2cvz_A           57 RVIFTCLPTTREV-YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLGG  134 (289)
T ss_dssp             SEEEECCSSHHHH-HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEES
T ss_pred             CEEEEeCCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEECC
Confidence            9999999965444 45678888888888888744332  233456665543 2345554 3321 11   1334444443


Q ss_pred             CCCCHHHHHHHHHHHHhcCCceEEeCCc-ccc----hhhhh---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          301 NQTSPQVIVDLLDIGKKIKKTPIVVGNC-TGF----AVNRM---FFPYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       301 ~~ts~e~~~~~~~l~~~lGk~~i~v~d~-~G~----i~nri---~~~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                         +++..+.+.+++ .+|..++++++. .+.    ..|.+   +...++|+..+.. .|++++++..++.
T Consensus       135 ---~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~  201 (289)
T 2cvz_A          135 ---PEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVIN  201 (289)
T ss_dssp             ---CHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred             ---CHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHH
Confidence               688999999999 999888887753 332    23433   2356789988875 6899999988876

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=99.41  E-value=9.6e-14  Score=136.33  Aligned_cols=98  Identities=14%  Similarity=0.201  Sum_probs=89.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       170 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~-p-----------------------------------  213 (275)
T 3hin_A          170 MMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNA-P-----------------------------------  213 (275)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.+...+++++++.|...+..++.|+|+++++++|++||+++..
T Consensus       214 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~  267 (275)
T 3hin_A          214 LTNFAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVR  267 (275)
T ss_dssp             HHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            266788999999988899999999999999999999999999999999988764

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=99.41  E-value=1.2e-13  Score=134.85  Aligned_cols=97  Identities=30%  Similarity=0.419  Sum_probs=88.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       162 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  205 (261)
T 3pea_A          162 MMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKS-P-----------------------------------  205 (261)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       206 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f  258 (261)
T 3pea_A          206 ATARAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPSF  258 (261)
T ss_dssp             HHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence            26778999999988888999999999999999999999999999999998765

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=99.41  E-value=3.2e-13  Score=133.25  Aligned_cols=98  Identities=15%  Similarity=0.183  Sum_probs=89.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.|.++|++++..+ |                                   
T Consensus       178 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  221 (279)
T 3g64_A          178 LLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGP-A-----------------------------------  221 (279)
T ss_dssp             HHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.+...+++++++.|...|..++.|+|+++++++|++||+++..
T Consensus       222 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~  275 (279)
T 3g64_A          222 LAHAQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQ  275 (279)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence            266678999999988899999999999999999999999999999999887654

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=99.41  E-value=2.4e-13  Score=134.30  Aligned_cols=99  Identities=17%  Similarity=0.207  Sum_probs=90.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.|.++|++++..+ |                                   
T Consensus       182 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  225 (286)
T 3myb_A          182 MLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKP-R-----------------------------------  225 (286)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP  135 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~  135 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++..+
T Consensus       226 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~g  280 (286)
T 3myb_A          226 AAVAMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWHT  280 (286)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCC
Confidence            2666789999999888999999999999999999999999999999999887653

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=99.41  E-value=2.8e-13  Score=132.48  Aligned_cols=97  Identities=18%  Similarity=0.218  Sum_probs=88.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.|.++|++++..+ |                                   
T Consensus       166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  209 (265)
T 3qxi_A          166 LALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANG-P-----------------------------------  209 (265)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....+++++++.|...|..++.|+|+++++++|++||+++.
T Consensus       210 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  262 (265)
T 3qxi_A          210 LAVAATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRW  262 (265)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence            26667999999998889999999999999999999999999999999998764

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=99.41  E-value=1.9e-13  Score=133.89  Aligned_cols=99  Identities=13%  Similarity=0.094  Sum_probs=88.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |                                   
T Consensus       162 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  205 (268)
T 3i47_A          162 LFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNA-P-----------------------------------  205 (268)
T ss_dssp             HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRA-GLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP  135 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~-~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~  135 (535)
                      .+...+|++++.+...++++ .++.|.+.|..++.|+|+++++.+|++||+++..+
T Consensus       206 ~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~  261 (268)
T 3i47_A          206 EAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWNE  261 (268)
T ss_dssp             HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC-
T ss_pred             HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence            26678999999988888887 68999999999999999999999999999887643

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=99.40  E-value=3.3e-13  Score=133.08  Aligned_cols=97  Identities=19%  Similarity=0.196  Sum_probs=89.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       179 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  222 (278)
T 4f47_A          179 LLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANG-P-----------------------------------  222 (278)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       223 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~f  275 (278)
T 4f47_A          223 LAVQAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNF  275 (278)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence            26678999999998889999999999999999999999999999999998764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.39  E-value=6.5e-13  Score=134.75  Aligned_cols=151  Identities=17%  Similarity=0.098  Sum_probs=109.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      .++|+|||+|.||.++|..|..+|++|+++|++++. .+.+.           +.|             +..+ +. +.+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~-----------~~G-------------~~~~-~~~e~~   70 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHG-------------LKVA-DVKTAV   70 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTT-------------CEEE-CHHHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHH-----------HCC-------------CEEc-cHHHHH
Confidence            468999999999999999999999999999998765 32221           122             1222 33 457


Q ss_pred             cCCCEEEEeccCChHHHHHHHH-HHHhhcCCCceeeecCCcCcHHHHHhhc-CCCCcEEeecccCCCCC---------CC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVGAHFFSPAHV---------MP  293 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig~h~~~P~~~---------~~  293 (535)
                      ++||+||+|+|+..  ...++. ++.+.++++++|++. +++.+ .+.... +...++++.||+.|.+.         +.
T Consensus        71 ~~aDvVilavp~~~--~~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~  146 (338)
T 1np3_A           71 AAADVVMILTPDEF--QGRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGI  146 (338)
T ss_dssp             HTCSEEEECSCHHH--HHHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCC
T ss_pred             hcCCEEEEeCCcHH--HHHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCC
Confidence            89999999999653  378888 898899999988865 45544 333322 22235999999877641         33


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhcCC-c--eEEeC
Q 009395          294 LLEIVRTNQTSPQVIVDLLDIGKKIKK-T--PIVVG  326 (535)
Q Consensus       294 lveiv~~~~ts~e~~~~~~~l~~~lGk-~--~i~v~  326 (535)
                      .+.++++..++++..+.+..+++.+|. .  ++.+.
T Consensus       147 ~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~  182 (338)
T 1np3_A          147 PDLIAIYQDASGNAKNVALSYACGVGGGRTGIIETT  182 (338)
T ss_dssp             CEEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEECC
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHcCCCccceEeec
Confidence            344567777788899999999999998 4  55553

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.39  E-value=2.6e-12  Score=136.32  Aligned_cols=205  Identities=15%  Similarity=0.175  Sum_probs=131.7

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHhh-----hccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEKFEKT-----ISLL  215 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~-----~~~i  215 (535)
                      +.++||+|||+|.||.++|..|+++  |++|++||+++++++...+            |...  ....+..     ..++
T Consensus         7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~------------g~~~i~e~gl~~~~~~~~~~~l   74 (481)
T 2o3j_A            7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNS------------DKLPIYEPGLDEIVFAARGRNL   74 (481)
T ss_dssp             CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS------------SSCSSCCTTHHHHHHHHBTTTE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHC------------CCCCcCCCCHHHHHHHhhcCCE
Confidence            3467999999999999999999998  7999999999999876532            1110  0001111     1246


Q ss_pred             ccccCc-ccccCCCEEEEeccCCh-------------HHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCC--
Q 009395          216 TGVLDY-ESFKDVDMVIEAIIENV-------------SLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--  276 (535)
Q Consensus       216 ~~~~~~-~~~~~aDlVI~avpe~~-------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~--  276 (535)
                      .+++++ +.+++||+||.|||...             ....++++.|.++++++++|+. .||+++.   .+...+..  
T Consensus        75 ~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~gt~~~l~~~l~~~~  153 (481)
T 2o3j_A           75 FFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE-KSTVPVKAAESIGCILREAQ  153 (481)
T ss_dssp             EEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHT
T ss_pred             EEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE-CCCCCCCHHHHHHHHHHHhh
Confidence            667776 56889999999997643             2467788899999999998764 4455543   33333321  


Q ss_pred             C----C-cEEeeccc--CCCCC-----CCEEEEEeCCC--CCHHHHHHHHHHHHhcCC-ceEEeCCc-----ccchhhhh
Q 009395          277 K----D-RIVGAHFF--SPAHV-----MPLLEIVRTNQ--TSPQVIVDLLDIGKKIKK-TPIVVGNC-----TGFAVNRM  336 (535)
Q Consensus       277 ~----~-r~ig~h~~--~P~~~-----~~lveiv~~~~--ts~e~~~~~~~l~~~lGk-~~i~v~d~-----~G~i~nri  336 (535)
                      .    . -.+..+|-  .|...     .+-..++.+..  .+++..+.++++++.+++ .++++.+.     ..++.|.+
T Consensus       154 ~~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~  233 (481)
T 2o3j_A          154 KNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAF  233 (481)
T ss_dssp             C----CCEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHH
T ss_pred             CcCcCCceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHH
Confidence            1    1 12333331  12110     01012233322  123678899999999996 67777642     12334443


Q ss_pred             ---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q 009395          337 ---FFPYTQAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       337 ---~~~~~~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                         ..++++|+..+.+ .|++++++..++.
T Consensus       234 ~a~~ia~~nE~~~la~~~Gid~~~v~~~~~  263 (481)
T 2o3j_A          234 LAQRISSINSISAVCEATGAEISEVAHAVG  263 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence               2356899999987 5999999999886

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=99.39  E-value=1.6e-13  Score=134.46  Aligned_cols=97  Identities=26%  Similarity=0.406  Sum_probs=88.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       165 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  208 (267)
T 3r9t_A          165 LLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNA-P-----------------------------------  208 (267)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCC-h-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHH---HHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDV---VEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~---i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++   ++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       209 ~a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f  264 (267)
T 3r9t_A          209 LSVQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPVW  264 (267)
T ss_dssp             HHHHHHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence            266678898   88888888999999999999999999999999999999998764

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=99.39  E-value=3.7e-13  Score=132.45  Aligned_cols=97  Identities=19%  Similarity=0.169  Sum_probs=89.0

Q ss_pred             CccCCC--CCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCC
Q 009395            1 MMLTSK--PVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAP   78 (535)
Q Consensus         1 mlltG~--~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (535)
                      |+|||+  +++|+||+++||||+|||++++++.|.++|++++..+ |                                 
T Consensus       173 l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~---------------------------------  218 (274)
T 3tlf_A          173 MALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNA-P---------------------------------  218 (274)
T ss_dssp             HHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H---------------------------------
T ss_pred             HHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCC-H---------------------------------
Confidence            478999  9999999999999999999999999999999999863 2                                 


Q ss_pred             CCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           79 NLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        79 ~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                        .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       219 --~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  271 (274)
T 3tlf_A          219 --LAVRGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPNW  271 (274)
T ss_dssp             --HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             --HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence              26778999999998889999999999999999999999999999999988764

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.38  E-value=8.9e-12  Score=121.85  Aligned_cols=178  Identities=14%  Similarity=0.106  Sum_probs=116.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      +||+|||+|.||.++|..|+++|++|++||+  +++.++...           +.|             +.  ++. +.+
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~-----------~~g-------------~~--~~~~~~~   54 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR-----------TVG-------------VT--ETSEEDV   54 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH-----------HHT-------------CE--ECCHHHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHH-----------HCC-------------Cc--CCHHHHH
Confidence            3799999999999999999999999999999  666654432           112             11  233 446


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH---HHHHhhcCCCCcEEeecccCCCC---CCCEEEEE
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL---NLIGERTYSKDRIVGAHFFSPAH---VMPLLEIV  298 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~---~~l~~~~~~~~r~ig~h~~~P~~---~~~lveiv  298 (535)
                      .+||+||+|+|++...+ . +.++.+.+++  ++++. |+..+   ..+++.+.... +++.+.+.++.   ...+ .++
T Consensus        55 ~~aDvvi~~v~~~~~~~-~-~~~~~~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~~  127 (264)
T 1i36_A           55 YSCPVVISAVTPGVALG-A-ARRAGRHVRG--IYVDI-NNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-IIA  127 (264)
T ss_dssp             HTSSEEEECSCGGGHHH-H-HHHHHTTCCS--EEEEC-SCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EEE
T ss_pred             hcCCEEEEECCCHHHHH-H-HHHHHHhcCc--EEEEc-cCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EEe
Confidence            89999999999765443 2 3567776766  55543 45543   35666665443 66655554332   2334 455


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCceEEeCCcccc-----hhhhhH----HHHHHHHHHHHH-cCCCHHHHHHHHH-hcC
Q 009395          299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF-----AVNRMF----FPYTQAAFLLVE-RGTDLYLIDRAIT-KFG  365 (535)
Q Consensus       299 ~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~-----i~nri~----~~~~~ea~~l~~-~G~~~~~ID~a~~-g~G  365 (535)
                      .++.   +  +.+.+ ++.+|+.++.+++.+|.     +.++.+    ...++|++.+.. .|++++ .-..+. .+|
T Consensus       128 ~g~~---~--~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g  198 (264)
T 1i36_A          128 SGRD---A--EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEG  198 (264)
T ss_dssp             ESTT---H--HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSC
T ss_pred             cCCc---H--HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcC
Confidence            5542   2  67778 99999988888754443     334433    345789988865 689876 444554 344

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.38  E-value=9e-12  Score=132.07  Aligned_cols=190  Identities=13%  Similarity=0.076  Sum_probs=130.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~  225 (535)
                      .++|+|||+|.||.++|..|+++|++|++||++++.++...+..        . +           ..+..++++++ +.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~--------~-~-----------~gi~~~~s~~e~v~   64 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEH--------Q-D-----------KNLVFTKTLEEFVG   64 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT--------T-T-----------SCEEECSSHHHHHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhC--------c-C-----------CCeEEeCCHHHHHh
Confidence            36899999999999999999999999999999999877654210        0 0           12334445543 34


Q ss_pred             ---CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--HHHHhhcCC-CCcEEeecccC-CC---CCCCEE
Q 009395          226 ---DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFS-PA---HVMPLL  295 (535)
Q Consensus       226 ---~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~-P~---~~~~lv  295 (535)
                         .+|+||+|||....+ ..+++++.+.++++++|++.+++.+.  ..+.+.+.. ..+++++ ++. ++   ..++ .
T Consensus        65 ~l~~aDvVilavp~~~~v-~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~-pv~gg~~~a~~g~-~  141 (474)
T 2iz1_A           65 SLEKPRRIMLMVQAGAAT-DATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGT-GVSGGEKGALLGP-S  141 (474)
T ss_dssp             TBCSSCEEEECCCTTHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEE-EECSHHHHHHHCC-C
T ss_pred             hccCCCEEEEEccCchHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECC-CCCCChhhhccCC-e
Confidence               499999999976544 56778899999989888876666543  456655532 3345543 322 11   1123 2


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCc--------eEEeCC-ccc----chhhhhH---HHHHHHHHHHHHc--CCCHHHH
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKT--------PIVVGN-CTG----FAVNRMF---FPYTQAAFLLVER--GTDLYLI  357 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~--------~i~v~d-~~G----~i~nri~---~~~~~ea~~l~~~--G~~~~~I  357 (535)
                       ++++.  +++..+.++++++.+|..        +.++++ ..|    ++.|.+.   ...++|+..+...  |++++++
T Consensus       142 -i~~gg--~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~  218 (474)
T 2iz1_A          142 -MMPGG--QKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEI  218 (474)
T ss_dssp             -EEEEE--CHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred             -EEecC--CHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence             33432  689999999999999987        355553 233    2345543   3458999999874  8999999


Q ss_pred             HHHHH
Q 009395          358 DRAIT  362 (535)
Q Consensus       358 D~a~~  362 (535)
                      ..++.
T Consensus       219 ~~l~~  223 (474)
T 2iz1_A          219 QAIFE  223 (474)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=99.38  E-value=2.6e-13  Score=132.81  Aligned_cols=98  Identities=18%  Similarity=0.273  Sum_probs=88.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhcc-CCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH-RRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++.. + |                                  
T Consensus       162 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~-p----------------------------------  206 (265)
T 3qxz_A          162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVA-P----------------------------------  206 (265)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSC-H----------------------------------
T ss_pred             HHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCC-H----------------------------------
Confidence            578999999999999999999999999999999999999985 3 2                                  


Q ss_pred             CCcHHHHHHHHHHhhcCChHHH--HHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           80 LTHPIVCIDVVEAGVVSGPRAG--LQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        80 ~~A~~~~~~~i~~~~~~~~~~~--l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                       .+...+|++++.....+++++  ++.|.+.|..++.|+|+++++++|++||+++..
T Consensus       207 -~a~~~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f~  262 (265)
T 3qxz_A          207 -ESAALTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRWA  262 (265)
T ss_dssp             -HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCCC
T ss_pred             -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCCC
Confidence             266678999999888888888  999999999999999999999999999988653

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=99.38  E-value=4e-13  Score=133.12  Aligned_cols=98  Identities=16%  Similarity=0.149  Sum_probs=89.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       188 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  231 (290)
T 3sll_A          188 IMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFS-R-----------------------------------  231 (290)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHh-cCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVV-SGPRAGLQKEAEDFQKLL-RSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~-~~~~~~l~~E~~~f~~~~-~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.+.. .+++++++.|...|..++ .|+|+++++.+|++||+++..
T Consensus       232 ~a~~~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f~  287 (290)
T 3sll_A          232 PGIELTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFR  287 (290)
T ss_dssp             HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence            266689999999988 899999999999999999 999999999999999887653

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=99.37  E-value=8.3e-13  Score=128.77  Aligned_cols=97  Identities=26%  Similarity=0.317  Sum_probs=88.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++++.++|++++..+ |                                   
T Consensus       159 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  202 (258)
T 2pbp_A          159 WLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQP-P-----------------------------------  202 (258)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       203 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  255 (258)
T 2pbp_A          203 LALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRF  255 (258)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence            26667899999988889999999999999999999999999999999987653

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.37  E-value=1e-11  Score=120.11  Aligned_cols=166  Identities=16%  Similarity=0.114  Sum_probs=104.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHH-HHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGI-GRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~-~~~~~-~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ..+||+|||+|.||.+||..|+++|++|++||++++. +.... ...          +.....+.....+.+..++..+.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~e~   87 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAM----------GAPPFSQWLPEHPHVHLAAFADV   87 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-----------------CCHHHHGGGSTTCEEEEHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhh----------cchhhhHHHhhcCceeccCHHHH
Confidence            3578999999999999999999999999999999886 11100 000          00000000001112223333456


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHH-HhhcCCCceeeecCCcC----------------cH-HHHHhhcCCCCcEEeecc
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADL-EKYCPPHCILASNTSTI----------------DL-NLIGERTYSKDRIVGAHF  285 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l-~~~~~~~~ii~s~tS~~----------------~~-~~l~~~~~~~~r~ig~h~  285 (535)
                      +++||+||.|||.+..  .+++.++ .+.+ ++++|++.+.++                .+ +.+++.++ ..+++...+
T Consensus        88 ~~~aDvVilavp~~~~--~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~-~~~vv~~~~  163 (245)
T 3dtt_A           88 AAGAELVVNATEGASS--IAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFP-EAKVVKTLN  163 (245)
T ss_dssp             HHHCSEEEECSCGGGH--HHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHST-TSEEEECST
T ss_pred             HhcCCEEEEccCcHHH--HHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCC-CCeEEEeec
Confidence            7899999999996543  4666677 6666 677777666321                22 35556564 356665444


Q ss_pred             cCCC-------C--CCCEEEEEeCCCCCHHHHHHHHHHHHhcCCc-eEEeCC
Q 009395          286 FSPA-------H--VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT-PIVVGN  327 (535)
Q Consensus       286 ~~P~-------~--~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~-~i~v~d  327 (535)
                      +.|.       .  ..++..++.++  +++..+.++++++.+|.. ++.+++
T Consensus       164 ~~~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~  213 (245)
T 3dtt_A          164 TMNASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGD  213 (245)
T ss_dssp             TSCHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             ccCHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCc
Confidence            3221       1  23444555553  689999999999999975 477775

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=99.37  E-value=8.3e-13  Score=128.85  Aligned_cols=97  Identities=21%  Similarity=0.241  Sum_probs=88.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       161 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  204 (260)
T 1mj3_A          161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNS-K-----------------------------------  204 (260)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       205 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~~  257 (260)
T 1mj3_A          205 IIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANF  257 (260)
T ss_dssp             HHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence            26668999999988889999999999999999999999999999999987654

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=99.36  E-value=1.1e-12  Score=128.52  Aligned_cols=97  Identities=21%  Similarity=0.224  Sum_probs=88.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++.|.+++++++..+ |                                   
T Consensus       166 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  209 (265)
T 2ppy_A          166 MNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSA-T-----------------------------------  209 (265)
T ss_dssp             HHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       210 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~  262 (265)
T 2ppy_A          210 YAVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNW  262 (265)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence            26667999999988889999999999999999999999999999999987754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.36  E-value=4.2e-12  Score=134.85  Aligned_cols=191  Identities=14%  Similarity=0.118  Sum_probs=128.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc---
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF---  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~---  224 (535)
                      ++|+|||+|.||..+|..|+++|++|++||++++.++...+.       . ..|           ..+..+++++++   
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-------~-~~g-----------~gi~~~~~~~e~v~~   63 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN-------E-AKG-----------TKVLGAHSLEEMVSK   63 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT-------T-TTT-----------SSCEECSSHHHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhc-------c-ccC-----------CCeEEeCCHHHHHhh
Confidence            479999999999999999999999999999999887765320       0 001           123345555442   


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--HHHHhhcC-CCCcEEeecccCCCC---CCCEEEE
Q 009395          225 -KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTY-SKDRIVGAHFFSPAH---VMPLLEI  297 (535)
Q Consensus       225 -~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~-~~~r~ig~h~~~P~~---~~~lvei  297 (535)
                       +++|+||+|||....+ ..++.++.+.++++++|++.+++.+.  ..+.+.+. ....++++..+.++.   ..+  .+
T Consensus        64 l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~--~i  140 (482)
T 2pgd_A           64 LKKPRRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP--SL  140 (482)
T ss_dssp             BCSSCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EE
T ss_pred             ccCCCEEEEeCCChHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC--eE
Confidence             5899999999976444 56778899999988888876666543  24544442 233555542222111   123  23


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCce-------EEeC-Cccc----chhhhhH---HHHHHHHHHHHH-c-CCCHHHHHHH
Q 009395          298 VRTNQTSPQVIVDLLDIGKKIKKTP-------IVVG-NCTG----FAVNRMF---FPYTQAAFLLVE-R-GTDLYLIDRA  360 (535)
Q Consensus       298 v~~~~ts~e~~~~~~~l~~~lGk~~-------i~v~-d~~G----~i~nri~---~~~~~ea~~l~~-~-G~~~~~ID~a  360 (535)
                      +++.  +++..+.++++++.+|..+       ++++ ...|    ++.|.+.   ...++|+..+.. . |++++++..+
T Consensus       141 ~~gg--~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~  218 (482)
T 2pgd_A          141 MPGG--NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKA  218 (482)
T ss_dssp             EEEE--CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             EeCC--CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence            4332  4678899999999999875       4443 2233    2345443   345899999986 5 8899999888


Q ss_pred             HH
Q 009395          361 IT  362 (535)
Q Consensus       361 ~~  362 (535)
                      +.
T Consensus       219 ~~  220 (482)
T 2pgd_A          219 FE  220 (482)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.35  E-value=1.6e-11  Score=130.19  Aligned_cols=194  Identities=12%  Similarity=0.073  Sum_probs=129.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc-
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK-  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~-  225 (535)
                      +||+|||+|.||..+|..|+++|++|++||+++++++...+.          .|... .     -..+..++++++ +. 
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~----------~g~~~-~-----~~~i~~~~~~~e~v~~   65 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA----------NASAP-F-----AGNLKAFETMEAFAAS   65 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------TTTST-T-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------cCCCC-C-----CCCeEEECCHHHHHhc
Confidence            479999999999999999999999999999999987765421          12110 0     012444555543 33 


Q ss_pred             --CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--HHHHhhcCC-CCcEEeecccCCC---CCCCEEEE
Q 009395          226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFSPA---HVMPLLEI  297 (535)
Q Consensus       226 --~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~P~---~~~~lvei  297 (535)
                        ++|+||+|||....+ ..+++++.+.++++++|++.+++.+.  ..+.+.+.. ...+++.....++   ..++ . +
T Consensus        66 l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~-i  142 (478)
T 1pgj_A           66 LKKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-A-F  142 (478)
T ss_dssp             BCSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-E-E
T ss_pred             ccCCCEEEEecCChHHH-HHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-e-E
Confidence              599999999976444 56778898999989888876655543  355555532 3345544222211   1233 2 3


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCc-------eEEeCC-cccc----hhhhhHH---HHHHHHHHHHH-cCCCHHHHHHHH
Q 009395          298 VRTNQTSPQVIVDLLDIGKKIKKT-------PIVVGN-CTGF----AVNRMFF---PYTQAAFLLVE-RGTDLYLIDRAI  361 (535)
Q Consensus       298 v~~~~ts~e~~~~~~~l~~~lGk~-------~i~v~d-~~G~----i~nri~~---~~~~ea~~l~~-~G~~~~~ID~a~  361 (535)
                      +.+.  +++..+.++++++.+|..       ++++++ ..|.    +.|.+.+   ..++|+..+.. .|++++++..++
T Consensus       143 ~~gg--~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~  220 (478)
T 1pgj_A          143 FPGG--TLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVL  220 (478)
T ss_dssp             EEEE--CHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             eccC--CHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            3332  588999999999999987       455553 2332    2344432   45899998876 688999998887


Q ss_pred             H
Q 009395          362 T  362 (535)
Q Consensus       362 ~  362 (535)
                      .
T Consensus       221 ~  221 (478)
T 1pgj_A          221 E  221 (478)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=99.34  E-value=1.1e-12  Score=127.47  Aligned_cols=96  Identities=22%  Similarity=0.314  Sum_probs=87.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       157 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  200 (253)
T 1uiy_A          157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNA-P-----------------------------------  200 (253)
T ss_dssp             HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++
T Consensus       201 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~  252 (253)
T 1uiy_A          201 TSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCC
Confidence            1566789999998888999999999999999999999999999999988764

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=99.34  E-value=1e-12  Score=127.97  Aligned_cols=97  Identities=19%  Similarity=0.157  Sum_probs=87.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  201 (257)
T 2ej5_A          158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMP-T-----------------------------------  201 (257)
T ss_dssp             HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       202 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~  254 (257)
T 2ej5_A          202 KAIGLIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLF  254 (257)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCCC
Confidence            15667899999988889999999999999999999999999999999987654

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=99.33  E-value=1e-12  Score=128.88  Aligned_cols=98  Identities=16%  Similarity=0.200  Sum_probs=88.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       164 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  207 (269)
T 1nzy_A          164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAP-T-----------------------------------  207 (269)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++..
T Consensus       208 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~  261 (269)
T 1nzy_A          208 HLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRP  261 (269)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCC
Confidence            156678999999888899999999999999999999999999999999887654

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=99.33  E-value=5.2e-13  Score=130.30  Aligned_cols=97  Identities=14%  Similarity=0.180  Sum_probs=79.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||+++++++|.+++++++..+ |                                   
T Consensus       163 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  206 (260)
T 1sg4_A          163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIP-D-----------------------------------  206 (260)
T ss_dssp             HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.....+++++++.|.+.|..++.|+|+++++++|++||+++|
T Consensus       207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~  259 (260)
T 1sg4_A          207 HARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEK  259 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC---------
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC
Confidence            15567888898887777888999999999999999999999999999998765

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=99.33  E-value=1.5e-12  Score=128.66  Aligned_cols=97  Identities=15%  Similarity=0.138  Sum_probs=87.6

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.+.++|++++..+ |                                   
T Consensus       189 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  232 (287)
T 2vx2_A          189 MLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLS-R-----------------------------------  232 (287)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       233 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f  285 (287)
T 2vx2_A          233 PVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVW  285 (287)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence            25667889999888888999999999999999999999999999999887653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.33  E-value=4e-12  Score=128.22  Aligned_cols=122  Identities=20%  Similarity=0.310  Sum_probs=90.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+|||+|.||.++|..++.+|+ +|++||+++++++.....+.+.....            ....+++.+++++++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al~~   82 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALI------------GSPAKIFGENNYEYLQN   82 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHH------------TCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhcc------------CCCCEEEECCCHHHHCC
Confidence            589999999999999999999999 99999999988875443333332111            11246777788888999


Q ss_pred             CCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCcee--eecCCcCcHHHHHhhcC--CCCcEEee
Q 009395          227 VDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY--SKDRIVGA  283 (535)
Q Consensus       227 aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~--~~~r~ig~  283 (535)
                      ||+||+++  |+            +..+++++++++.+++ +++++  +||++.+. +.+.....  .|.|++|+
T Consensus        83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~  155 (328)
T 2hjr_A           83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM  155 (328)
T ss_dssp             CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred             CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence            99999998  54            4567999999999998 55544  67766543 34443333  57788887

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=99.33  E-value=6.9e-13  Score=129.42  Aligned_cols=94  Identities=26%  Similarity=0.219  Sum_probs=71.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       165 l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  208 (262)
T 3r9q_A          165 LILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFP-Q-----------------------------------  208 (262)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.+...+++++++.|.+ +..++.| |+++++++|++|+++.
T Consensus       209 ~a~~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~  258 (262)
T 3r9q_A          209 QCVRADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRH  258 (262)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC-----------------
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCC
Confidence            266789999999998999999999999 9999999 9999999999998764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.33  E-value=1.2e-11  Score=116.61  Aligned_cols=135  Identities=11%  Similarity=0.070  Sum_probs=101.5

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +.+||+|||+|.||+++|..|+++|++|++||++++                                         .++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~   56 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATT   56 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhc
Confidence            357899999999999999999999999999998754                                         356


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc---------------HHHHHhhcCCCCcEEe-ecccC-C
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID---------------LNLIGERTYSKDRIVG-AHFFS-P  288 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~---------------~~~l~~~~~~~~r~ig-~h~~~-P  288 (535)
                      +||+||+|+|  ....+++++++.+.++ ++++++.+++++               .+.+++.++ ..++++ .|++. |
T Consensus        57 ~aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p  132 (209)
T 2raf_A           57 LGEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAA  132 (209)
T ss_dssp             CCSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHH
T ss_pred             cCCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHh
Confidence            8999999998  4455788888888888 888888777665               345666664 457887 66642 2


Q ss_pred             CC-----CC--CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          289 AH-----VM--PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       289 ~~-----~~--~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                      ..     ..  +...++.+  .+++..+.+.++++.+|..++.+++
T Consensus       133 ~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~  176 (209)
T 2raf_A          133 TLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK  176 (209)
T ss_dssp             HHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred             hccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence            11     11  22333444  3678999999999999998888876

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.33  E-value=2.7e-12  Score=141.82  Aligned_cols=120  Identities=15%  Similarity=0.168  Sum_probs=97.7

Q ss_pred             CHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHh
Q 009395          304 SPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLV  377 (535)
Q Consensus       304 s~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~  377 (535)
                      +++..+.+..+....+...-..  ....+..|++++++||+++++++|+  ++.|||.+|. |+|||.   |||+++|.+
T Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~--~~~ei~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~  689 (742)
T 3zwc_A          612 DPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASV  689 (742)
T ss_dssp             CHHHHHHHHHHHHHHTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHH
T ss_pred             ChHHHHHHHHHhhhcCCCcCCC--CHHHHHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHH
Confidence            4555444444444333221111  1234889999999999999999997  8999999999 999998   999999999


Q ss_pred             chHHHHHHHHHHHHhCCC--CCccCccHHHHHHCCCCCccCCceeeeecC
Q 009395          378 GFGVAIATGMQFIENFPE--RTYKSMIIPIMQEDKRAGETTRKGFYLYDE  425 (535)
Q Consensus       378 Gld~~~~~~~~l~~~~~~--~~~~~~~l~~~~~~G~~G~k~g~GFY~y~~  425 (535)
                      |++.+.+.++.++..+|+  ++.|++||.+|+++|....+.++|||.+.+
T Consensus       690 G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~~~f~~~~~~~~~~~  739 (742)
T 3zwc_A          690 GLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQSLAGPHG  739 (742)
T ss_dssp             CHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCGGGHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCCCcccccccccCCCC
Confidence            999999999999999997  567999999999999888888888887654

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=99.32  E-value=3.4e-13  Score=133.95  Aligned_cols=98  Identities=22%  Similarity=0.267  Sum_probs=54.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhcc-CCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH-RRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++.. + |                                  
T Consensus       194 llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~-p----------------------------------  238 (298)
T 3qre_A          194 LLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCS-P----------------------------------  238 (298)
T ss_dssp             HHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSC-H----------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCC-H----------------------------------
Confidence            578999999999999999999999999999999999999985 3 2                                  


Q ss_pred             CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                       .|...+|++++.+...++++++..|...|..++.|+|+++++.+|++||+++..
T Consensus       239 -~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f~  292 (298)
T 3qre_A          239 -SSMAVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFP  292 (298)
T ss_dssp             -HHHHHHHHHHHGGGGC--------------------------------------
T ss_pred             -HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence             266789999999988899999999999999999999999999999999988754

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=99.32  E-value=9.2e-13  Score=130.41  Aligned_cols=98  Identities=14%  Similarity=0.158  Sum_probs=81.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |                                   
T Consensus       183 l~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  226 (291)
T 2fbm_A          183 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYN-P-----------------------------------  226 (291)
T ss_dssp             HHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             HHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5799999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHH-hhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIF-FAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF-~~kr~~~~~  134 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++.+| ++||+++..
T Consensus       227 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f~  281 (291)
T 2fbm_A          227 IVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFP  281 (291)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC----------
T ss_pred             HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCC
Confidence            256678999998877788999999999999999999999999999 999887653

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=99.31  E-value=1.4e-12  Score=127.32  Aligned_cols=97  Identities=19%  Similarity=0.194  Sum_probs=87.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++.|.+++++++..+ |                                   
T Consensus       160 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  203 (261)
T 1ef8_A          160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P-----------------------------------  203 (261)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             HHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHH--HHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQ--KLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~--~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|.  .++.|+|+++++++|++||+++.
T Consensus       204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~~  258 (261)
T 1ef8_A          204 LAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNF  258 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCCC
Confidence            156678999998888888999999999999  99999999999999999987654

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=99.31  E-value=1.9e-12  Score=126.53  Aligned_cols=95  Identities=16%  Similarity=0.079  Sum_probs=85.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       168 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  211 (264)
T 1wz8_A          168 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGP-K-----------------------------------  211 (264)
T ss_dssp             HHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.+... ++++++.|.+.|..++.|+|+++++++|++||+++
T Consensus       212 ~a~~~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~  262 (264)
T 1wz8_A          212 EALHHTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPE  262 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCC
Confidence            1566788999988877 89999999999999999999999999999998765

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.30  E-value=1.2e-11  Score=127.07  Aligned_cols=168  Identities=14%  Similarity=0.059  Sum_probs=104.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      |+||+|||+|.||.++|..|+++|++|++||++++.++...+.-       .....+...   .....+..+++. +.++
T Consensus        15 M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~~   84 (366)
T 1evy_A           15 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKR-------ENVLFLKGV---QLASNITFTSDVEKAYN   84 (366)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHT-------BCTTTSTTC---BCCTTEEEESCHHHHHT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC-------ccccccccc---ccccceeeeCCHHHHHc
Confidence            44899999999999999999999999999999998876553210       000000000   000124444555 3478


Q ss_pred             CCCEEEEeccCChHHHHHHHHH----HHhhcCC-CceeeecCCcCcHH---HHHhhcCC--CC--cEEeecccCCC---C
Q 009395          226 DVDMVIEAIIENVSLKQQIFAD----LEKYCPP-HCILASNTSTIDLN---LIGERTYS--KD--RIVGAHFFSPA---H  290 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~----l~~~~~~-~~ii~s~tS~~~~~---~l~~~~~~--~~--r~ig~h~~~P~---~  290 (535)
                      +||+||+|||+  ....+++.+    +.+.+++ ++++++.+.++.+.   .+.+.+..  +.  ..+...|..+.   .
T Consensus        85 ~aDvVilav~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~  162 (366)
T 1evy_A           85 GAEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVAT  162 (366)
T ss_dssp             TCSSEEECCCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHT
T ss_pred             CCCEEEECCCh--HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHh
Confidence            99999999985  466788888    8888888 88888877676553   22232211  11  11111122111   1


Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhc--CCceEEeCCc
Q 009395          291 VMPLLEIVRTNQTSPQVIVDLLDIGKKI--KKTPIVVGNC  328 (535)
Q Consensus       291 ~~~lveiv~~~~ts~e~~~~~~~l~~~l--Gk~~i~v~d~  328 (535)
                      ..+...++.+  .+++..+.+.+++...  |..++..+|.
T Consensus       163 g~~~~~~~~~--~~~~~~~~v~~ll~~~g~g~~~~~~~di  200 (366)
T 1evy_A          163 GVFTCVSIAS--ADINVARRLQRIMSTGDRSFVCWATTDT  200 (366)
T ss_dssp             TCCEEEEEEC--SSHHHHHHHHHHHSCTTSSEEEEEESCH
T ss_pred             CCceEEEEec--CCHHHHHHHHHHhcCCCCeEEEEEcCCc
Confidence            1122222222  3678899999999999  7776666664

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=99.30  E-value=4.6e-13  Score=130.45  Aligned_cols=94  Identities=19%  Similarity=0.261  Sum_probs=51.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       163 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  206 (256)
T 3qmj_A          163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKP-I-----------------------------------  206 (256)
T ss_dssp             HHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~  130 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+
T Consensus       207 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  256 (256)
T 3qmj_A          207 SSLMAVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR  256 (256)
T ss_dssp             HHHHHHHHHHHCC-------------------------------------
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence            26678999999988888999999999999999999999999999999874

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=99.30  E-value=2.2e-12  Score=126.97  Aligned_cols=97  Identities=16%  Similarity=0.121  Sum_probs=87.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCC-CchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAP-NQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (535)
                      |+|||++++|+||+++||||+|||+ ++++++|.++|++++..+ |                                  
T Consensus       172 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~-p----------------------------------  216 (275)
T 1dci_A          172 LTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS-P----------------------------------  216 (275)
T ss_dssp             HHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC-H----------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence            5789999999999999999999999 999999999999999863 2                                  


Q ss_pred             CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc---ccCCC
Q 009395           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQ---RGTSK  133 (535)
Q Consensus        80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~k---r~~~~  133 (535)
                       .+...+|++++.+...+++++++.|.+.+..++.|+|+++++++|++|   |+++.
T Consensus       217 -~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f  272 (275)
T 1dci_A          217 -VAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITF  272 (275)
T ss_dssp             -HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCC
T ss_pred             -HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence             266678999999888899999999999999999999999999999998   76653

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=99.30  E-value=1.6e-12  Score=128.10  Aligned_cols=95  Identities=18%  Similarity=0.209  Sum_probs=75.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       185 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  228 (280)
T 2f6q_A          185 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLP-P-----------------------------------  228 (280)
T ss_dssp             HHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT  131 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~  131 (535)
                      .+...+|++++.....+++++++.|.+.|..++.|+|+++++++|++||++
T Consensus       229 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p  279 (280)
T 2f6q_A          229 NALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK  279 (280)
T ss_dssp             HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred             HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence            155678889988877778899999999999999999999999999999864

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=99.29  E-value=8.2e-12  Score=125.50  Aligned_cols=124  Identities=18%  Similarity=0.320  Sum_probs=90.7

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      +++||+|||+|.||.++|..++.+|+ +|+++|+++++++.....+.+.+...            ....+++.+++++++
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~------------~~~~~i~~t~d~~al   70 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMA------------YSNCKVSGSNTYDDL   70 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHH------------TCCCCEEEECCGGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhc------------CCCcEEEECCCHHHh
Confidence            35799999999999999999999998 99999999988875544443332210            112356677788889


Q ss_pred             cCCCEEEEec--cCCh-----------------HHHHHHHHHHHhhcCCCcee--eecCCcCcHHHHHhhcC--CCCcEE
Q 009395          225 KDVDMVIEAI--IENV-----------------SLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY--SKDRIV  281 (535)
Q Consensus       225 ~~aDlVI~av--pe~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~--~~~r~i  281 (535)
                      ++||+||+++  |+++                 .+++++++++.+++ +++++  +||.+++. +.+.....  .|.|++
T Consensus        71 ~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rvi  148 (322)
T 1t2d_A           71 AGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKII  148 (322)
T ss_dssp             TTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEE
T ss_pred             CCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEE
Confidence            9999999998  6532                 37899999999998 56643  67766554 34443333  467888


Q ss_pred             ee
Q 009395          282 GA  283 (535)
Q Consensus       282 g~  283 (535)
                      |+
T Consensus       149 G~  150 (322)
T 1t2d_A          149 GL  150 (322)
T ss_dssp             EC
T ss_pred             ec
Confidence            86

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=99.29  E-value=3.4e-12  Score=125.45  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=82.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       173 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  216 (275)
T 4eml_A          173 IWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKS-P-----------------------------------  216 (275)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++..... .....+.|.+.+..++.|+|+++++.+|++||+++..
T Consensus       217 ~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f~  269 (275)
T 4eml_A          217 LAIRCLKAAFNADCDG-QAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDFS  269 (275)
T ss_dssp             HHHHHHHHHHHHTTSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCT
T ss_pred             HHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence            2566788888876532 3344567888899999999999999999999988754

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=99.28  E-value=5.4e-12  Score=128.17  Aligned_cols=133  Identities=16%  Similarity=0.085  Sum_probs=88.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccC-------CCcchh---hcc-cCCCCCchHHHHHHHH-
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHR-------RPWVAT---LYK-TDKIEPLGEAREIFKF-   68 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~-------~p~~~~---~~~-~~~~~~~~~~~~~~~~-   68 (535)
                      |+|||++++|+||+++||||+|||+++|.+.+.+++.+.....       .|....   ... ...+..... ...+.. 
T Consensus       168 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~-~~i~~~L  246 (353)
T 4hdt_A          168 AALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTV-ADIIAAL  246 (353)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSH-HHHHHHH
T ss_pred             HHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCH-HHHHHHH
Confidence            5789999999999999999999999999999999887643310       000000   000 000000000 001110 


Q ss_pred             -------HHHHHHH-hCCCCCcHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHhcCHHHHHHHHHHh--hcccCCCC
Q 009395           69 -------ARAQARK-QAPNLTHPIVCIDVVEAGVVS-GPRAGLQKEAEDFQKLLRSETCKSLVHIFF--AQRGTSKV  134 (535)
Q Consensus        69 -------~~~~~~~-~~~~~~A~~~~~~~i~~~~~~-~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~--~kr~~~~~  134 (535)
                             +...... ..+++.++..+|++++++... +++++|+.|.+.+..++.|+|++||+++|+  +||+|+..
T Consensus       247 ~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~  323 (353)
T 4hdt_A          247 RAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWR  323 (353)
T ss_dssp             HHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCS
T ss_pred             HhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCC
Confidence                   1111111 234677899999999998875 799999999999999999999999999998  88887654

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=99.28  E-value=9.8e-13  Score=128.45  Aligned_cols=96  Identities=16%  Similarity=0.200  Sum_probs=86.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.+++++++..+ |                                   
T Consensus       165 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  208 (261)
T 2gtr_A          165 MLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCN-P-----------------------------------  208 (261)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999862 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.....+++++++.|.+.|..++.|+|+++++.+|++||+++
T Consensus       209 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~  260 (261)
T 2gtr_A          209 VVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDE  260 (261)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCC
Confidence            2566789999988777789999999999999999999999999999998764

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=99.28  E-value=2.2e-12  Score=126.24  Aligned_cols=96  Identities=20%  Similarity=0.212  Sum_probs=77.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||  +++++|.++|++++..+ |                                   
T Consensus       163 l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~-~-----------------------------------  204 (266)
T 3fdu_A          163 LLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALP-L-----------------------------------  204 (266)
T ss_dssp             HHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            578999999999999999999998  89999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP  135 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~  135 (535)
                      .|...+|++++.+. .+++++++.|.+.|..++.|+|+++++++|++||+++...
T Consensus       205 ~a~~~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~~~  258 (266)
T 3fdu_A          205 ASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQ  258 (266)
T ss_dssp             HHHHHHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence            26667888888765 4688999999999999999999999999999999887653

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=99.27  E-value=4.7e-12  Score=124.03  Aligned_cols=95  Identities=18%  Similarity=0.242  Sum_probs=85.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|  ++++++.|.+++++++..+ |                                   
T Consensus       171 l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~-~-----------------------------------  212 (267)
T 3oc7_A          171 YYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGS-P-----------------------------------  212 (267)
T ss_dssp             HHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999  8899999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       213 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f  265 (267)
T 3oc7_A          213 QGLAASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPNW  265 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence            26667899999988888999999999999999999999999999999988754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.27  E-value=1e-12  Score=137.19  Aligned_cols=91  Identities=18%  Similarity=0.297  Sum_probs=75.1

Q ss_pred             ccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCC--CccC
Q 009395          329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPER--TYKS  400 (535)
Q Consensus       329 ~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~  400 (535)
                      ...+.+|++++++||+++++++|+  ++.|||.++. |+|||.   |||+++|.+|++.+...++.|...+|++  +.|+
T Consensus       355 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~~~~~~p~  434 (460)
T 3k6j_A          355 DQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYIVA  434 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTTCGGGSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            457899999999999999999997  6999999999 999997   9999999999999999999999999998  6799


Q ss_pred             ccHHHHHHCCCCCccCCce
Q 009395          401 MIIPIMQEDKRAGETTRKG  419 (535)
Q Consensus       401 ~~l~~~~~~G~~G~k~g~G  419 (535)
                      ++|.+|+++|++|.|||.-
T Consensus       435 ~~L~~~a~~g~~~~~~~~~  453 (460)
T 3k6j_A          435 DALKTANVSTGSSGSSGGH  453 (460)
T ss_dssp             HHHHHHC------------
T ss_pred             HHHHHHHHcCCCccccCCC
Confidence            9999999999999999953

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.26  E-value=5.5e-12  Score=119.56  Aligned_cols=151  Identities=15%  Similarity=0.169  Sum_probs=102.3

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      ..+||+|||+|.||..++..|+++|++|+++|++++.++...           +.|             +..++..+.++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~-----------~~g-------------~~~~~~~~~~~   82 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLF-----------PSA-------------AQVTFQEEAVS   82 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHS-----------BTT-------------SEEEEHHHHTT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcC-------------CceecHHHHHh
Confidence            457899999999999999999999999999999988765431           111             12222224578


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHH----------hhcCCCCcEEee-ccc-----CC-
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG----------ERTYSKDRIVGA-HFF-----SP-  288 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----------~~~~~~~r~ig~-h~~-----~P-  288 (535)
                      +||+||.|+|..  ....+++ +.+.. +++++++.+++++.+.+.          +.++ ..++++. ++.     .+ 
T Consensus        83 ~~DvVi~av~~~--~~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~n~~~~~~~~~~  157 (215)
T 2vns_A           83 SPEVIFVAVFRE--HYSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAFNVISAWTLQAG  157 (215)
T ss_dssp             SCSEEEECSCGG--GSGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEECTTBCHHHHHTC
T ss_pred             CCCEEEECCChH--HHHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEeccccccHhHhccc
Confidence            999999999853  3345554 55555 788898989888776543          3343 2355543 111     11 


Q ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          289 AHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       289 ~~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                      +...+...++.+  .+++..+.++++++.+|+.++.+++
T Consensus       158 ~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~  194 (215)
T 2vns_A          158 PRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS  194 (215)
T ss_dssp             SCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             ccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence            111222223333  3789999999999999999999976

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.26  E-value=2.6e-11  Score=125.04  Aligned_cols=155  Identities=12%  Similarity=0.063  Sum_probs=111.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          147 VKKVAILGGGLMGSGIATALILS------NYPVILKEVNEK-FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      ++||+|||+|.||.++|..|.++      |++|++.+++.+ ..+.+.           +.|.....       . ...+
T Consensus        54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~-----------e~G~~v~d-------~-ta~s  114 (525)
T 3fr7_A           54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEAR-----------AAGFTEES-------G-TLGD  114 (525)
T ss_dssp             CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTTCCTTT-------T-CEEE
T ss_pred             CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHH-----------HCCCEEec-------C-CCCC
Confidence            37899999999999999999999      999987776533 222221           23321100       0 0122


Q ss_pred             CcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHh---hcCCCCcEEeecccCCCCC-----
Q 009395          220 DYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE---RTYSKDRIVGAHFFSPAHV-----  291 (535)
Q Consensus       220 ~~~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~---~~~~~~r~ig~h~~~P~~~-----  291 (535)
                      ..+.+++||+||.++|....  .+++.++.+.++++++| +.++++++..+.+   .++...+++.+||+.|.+.     
T Consensus       115 ~aEAa~~ADVVILaVP~~~~--~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y  191 (525)
T 3fr7_A          115 IWETVSGSDLVLLLISDAAQ--ADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLY  191 (525)
T ss_dssp             HHHHHHHCSEEEECSCHHHH--HHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHH
T ss_pred             HHHHHhcCCEEEECCChHHH--HHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHH
Confidence            23567899999999996533  46888999999999985 7888999888775   3344468999999999763     


Q ss_pred             --------CCEE-EEEeCCCCCHHHHHHHHHHHHhcCCceE
Q 009395          292 --------MPLL-EIVRTNQTSPQVIVDLLDIGKKIKKTPI  323 (535)
Q Consensus       292 --------~~lv-eiv~~~~ts~e~~~~~~~l~~~lGk~~i  323 (535)
                              .... -+..+...+.+..+.+..++..+|...+
T Consensus       192 ~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          192 VQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             hcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence                    1222 2344455677889999999999998754

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.26  E-value=1.3e-11  Score=124.72  Aligned_cols=123  Identities=22%  Similarity=0.306  Sum_probs=90.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  224 (535)
                      .+||+|||+|.||.++|..|+.+|+ +|++||+++++++.....+.+.....   +         ...+++.+++++ ++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~---~---------~~~~i~~t~d~~ea~   76 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSYEAAL   76 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc---C---------CCCEEEEeCCHHHHh
Confidence            4689999999999999999999998 99999999988876444444332211   1         123577778886 79


Q ss_pred             cCCCEEEEec--cCCh-----------------HHHHHHHHHHHhhcCCCcee--eecCCcCcHHHHH-hhcC-CCCcEE
Q 009395          225 KDVDMVIEAI--IENV-----------------SLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIG-ERTY-SKDRIV  281 (535)
Q Consensus       225 ~~aDlVI~av--pe~~-----------------~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~-~~~~-~~~r~i  281 (535)
                      ++||+||+++  |+++                 .+++++++++.+++ +++++  +||.+++. +.+. ...+ .|.|++
T Consensus        77 ~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rvi  154 (331)
T 1pzg_A           77 TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMIC  154 (331)
T ss_dssp             TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEE
T ss_pred             CCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEE
Confidence            9999999998  7554                 34889999999998 56654  57766654 3443 3333 467888


Q ss_pred             ee
Q 009395          282 GA  283 (535)
Q Consensus       282 g~  283 (535)
                      |+
T Consensus       155 G~  156 (331)
T 1pzg_A          155 GM  156 (331)
T ss_dssp             EC
T ss_pred             ec
Confidence            86

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=99.26  E-value=5.9e-12  Score=123.68  Aligned_cols=96  Identities=22%  Similarity=0.296  Sum_probs=83.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |                                   
T Consensus       171 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  214 (273)
T 2uzf_A          171 IWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHS-P-----------------------------------  214 (273)
T ss_dssp             HHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             HHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHH-HHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEA-EDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~-~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++  ...+++++++.|. +.|..++.|+|+++++++|++||+++..
T Consensus       215 ~a~~~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~f~  267 (273)
T 2uzf_A          215 TALRFLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFD  267 (273)
T ss_dssp             HHHHHHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCS
T ss_pred             HHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCCCC
Confidence            15556788887  3356888999999 9999999999999999999999887653

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=99.24  E-value=4.6e-12  Score=125.29  Aligned_cols=97  Identities=15%  Similarity=0.208  Sum_probs=82.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       187 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~-~-----------------------------------  230 (289)
T 3t89_A          187 IWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNS-P-----------------------------------  230 (289)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.... ........|.+.+..++.|+|+++++.+|++||+++..
T Consensus       231 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~  283 (289)
T 3t89_A          231 MALRCLKAALNADCD-GQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFS  283 (289)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCCT
T ss_pred             HHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence            256678888887653 23344557888899999999999999999999988754

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=99.24  E-value=6.9e-12  Score=123.11  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=82.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchH----HHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHh
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLV----STARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQ   76 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~----~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (535)
                      |+|||++++|+||+++||||+|||++++.    +.|.+++++++..+ |                               
T Consensus       169 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~-p-------------------------------  216 (272)
T 1hzd_A          169 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQG-P-------------------------------  216 (272)
T ss_dssp             HHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSC-H-------------------------------
T ss_pred             HHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCC-H-------------------------------
Confidence            57899999999999999999999998864    45666777666642 1                               


Q ss_pred             CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           77 APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        77 ~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                          .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++.
T Consensus       217 ----~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~  269 (272)
T 1hzd_A          217 ----VAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRY  269 (272)
T ss_dssp             ----HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCC
T ss_pred             ----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence                25667899999988889999999999999999999999999999999988754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.24  E-value=4.5e-11  Score=122.01  Aligned_cols=170  Identities=19%  Similarity=0.067  Sum_probs=108.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSN-------YPVILKEVNEK-----FLEAGIGRVRANLQSRVKKGKMTQEKFEKTIS  213 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G-------~~V~l~d~~~~-----~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~  213 (535)
                      ..+||+|||+|.||+++|..|+++|       ++|++||++++     ..+...+.       ..........   ....
T Consensus         7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~~~---~~~~   76 (354)
T 1x0v_A            7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQ-------HENVKYLPGH---KLPP   76 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHH-------SCCTTTSTTC---CCCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhc-------CcccccCCcc---cCcc
Confidence            3568999999999999999999999       99999999987     55443210       0000000000   0011


Q ss_pred             ccccccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--------HH-HHhhcCCCCcEEee
Q 009395          214 LLTGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--------NL-IGERTYSKDRIVGA  283 (535)
Q Consensus       214 ~i~~~~~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--------~~-l~~~~~~~~r~ig~  283 (535)
                      ++..+++.+ .+++||+||+|||+  ....++++++.+.+++++++++.++++.+        .+ +.+.++.+ ..+..
T Consensus        77 ~~~~~~~~~~~~~~aD~Vilav~~--~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v~~  153 (354)
T 1x0v_A           77 NVVAVPDVVQAAEDADILIFVVPH--QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP-MSVLM  153 (354)
T ss_dssp             TEEEESSHHHHHTTCSEEEECCCG--GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC-EEEEE
T ss_pred             CeEEEcCHHHHHcCCCEEEEeCCH--HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC-EEEEE
Confidence            344455653 47899999999986  36788999999999999999888877653        12 22223211 12222


Q ss_pred             cccCCCC---CCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395          284 HFFSPAH---VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       284 h~~~P~~---~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                      .|..+..   ..+...++.+  .+++..+.+.+++...|..+....|..+
T Consensus       154 gp~~a~~v~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~~~~~~~di~~  201 (354)
T 1x0v_A          154 GANIASEVADEKFCETTIGC--KDPAQGQLLKELMQTPNFRITVVQEVDT  201 (354)
T ss_dssp             CSCCHHHHHTTCCEEEEEEC--SSHHHHHHHHHHHCBTTEEEEEESCHHH
T ss_pred             CCCcHHHHHhcCCceEEEEE--CCHHHHHHHHHHhCCCCEEEEEcCCchH
Confidence            2322211   1122222222  4678899999999999988877776433

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.23  E-value=8.9e-11  Score=118.94  Aligned_cols=156  Identities=13%  Similarity=0.070  Sum_probs=95.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC---CCHHHHHhhhcccccccCcccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK---MTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~---~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      +||+|||+|.||+.+|..|+++|++|++||+++++++...+           .|.   ++..    .+ .+..+++.+++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~-----------~g~~~~~~~~----~~-~~~~~~~~~~~   78 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINV-----------SHTSPYVEES----KI-TVRATNDLEEI   78 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------HSCBTTBTTC----CC-CSEEESCGGGC
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------hCCcccCCCC----ee-eEEEeCCHHHh
Confidence            68999999999999999999999999999999988765432           120   0000    00 23445555448


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCC--C-CcEEeecccCCCC--CCCEEE
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYS--K-DRIVGAHFFSPAH--VMPLLE  296 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~--~-~r~ig~h~~~P~~--~~~lve  296 (535)
                      .++|+||.|||.  ....+++.++.+   +++++++.+.++++.   .+++.+..  + ...+...|..+..  .+....
T Consensus        79 ~~aDvVil~vk~--~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~  153 (335)
T 1z82_A           79 KKEDILVIAIPV--QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTA  153 (335)
T ss_dssp             CTTEEEEECSCG--GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEE
T ss_pred             cCCCEEEEECCH--HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceE
Confidence            899999999984  344566665544   677777766565442   23332210  1 1122222332221  122222


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC  328 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~  328 (535)
                      ++.+.. +   .+.+.+++...|..+....|.
T Consensus       154 ~~~g~~-~---~~~~~~ll~~~g~~~~~~~di  181 (335)
T 1z82_A          154 VTLAGE-N---SKELQKRISTEYFRVYTCEDV  181 (335)
T ss_dssp             EEEEET-T---HHHHHHHHCCSSEEEEEESCH
T ss_pred             EEEEeh-h---HHHHHHHhCCCCEEEEecCch
Confidence            222211 2   678889999999887777664

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=99.23  E-value=2.9e-12  Score=125.14  Aligned_cols=96  Identities=16%  Similarity=0.256  Sum_probs=81.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecC-CCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVA-PNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~-~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (535)
                      |++||++++|+||+++||||+||| +++++++|.++|++++..+ |                                  
T Consensus       165 l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~-~----------------------------------  209 (263)
T 3lke_A          165 LLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGY-V----------------------------------  209 (263)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSC-H----------------------------------
T ss_pred             HHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCC-H----------------------------------
Confidence            578999999999999999999999 9999999999999999963 2                                  


Q ss_pred             CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                       .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|.+++++.
T Consensus       210 -~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~  261 (263)
T 3lke_A          210 -PAIAATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHH  261 (263)
T ss_dssp             -HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC-------
T ss_pred             -HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCC
Confidence             2666789999988888899999999999999999999999999999988754

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=99.23  E-value=1.6e-12  Score=130.73  Aligned_cols=97  Identities=16%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++|+++|.++|++|+..+ |                                   
T Consensus       232 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~-p-----------------------------------  275 (334)
T 3t8b_A          232 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKS-P-----------------------------------  275 (334)
T ss_dssp             HHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999963 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .|...+|++++.... ++...+..|.+.+..++.|+|+++++.+|++||++...
T Consensus       276 ~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f~  328 (334)
T 3t8b_A          276 QAQRMLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWS  328 (334)
T ss_dssp             HHHHHHHHHHHHTCC-CC------------------------------------
T ss_pred             HHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence            266678899888754 45556677888899999999999999999999988654

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=99.22  E-value=2.1e-12  Score=125.38  Aligned_cols=94  Identities=10%  Similarity=0.074  Sum_probs=65.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       157 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  200 (250)
T 2a7k_A          157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYP-A-----------------------------------  200 (250)
T ss_dssp             HHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~  130 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+
T Consensus       201 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~  250 (250)
T 2a7k_A          201 SAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY  250 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred             HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence            25667889998887778899999999999999999999999999999873

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.21  E-value=3.2e-10  Score=117.58  Aligned_cols=200  Identities=17%  Similarity=0.188  Sum_probs=121.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhh----hcccccccCc-
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKT----ISLLTGVLDY-  221 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~----~~~i~~~~~~-  221 (535)
                      +||+|||+|.||..+|..|++ |++|++||+++++++...+.           +. +.....+..    ..++..++++ 
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~-----------~~~i~e~~l~~~~~~~~~~l~~t~~~~   68 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNG-----------LSPIQDEYIEYYLKSKQLSIKATLDSK   68 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTT-----------CCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcC-----------CCCcCCCCHHHHHHhccCcEEEeCCHH
Confidence            479999999999999999999 99999999999988765321           11 111111111    1245556665 


Q ss_pred             ccccCCCEEEEeccCCh---------HHHHHHHHHHHhhcCCCceeee-cCCcC-cHHHHHhhcCCCCcEEeecc--cCC
Q 009395          222 ESFKDVDMVIEAIIENV---------SLKQQIFADLEKYCPPHCILAS-NTSTI-DLNLIGERTYSKDRIVGAHF--FSP  288 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~---------~~k~~v~~~l~~~~~~~~ii~s-~tS~~-~~~~l~~~~~~~~r~ig~h~--~~P  288 (535)
                      +.+++||+||.|||...         ....++++.+.+ ++++++|+. .|.+. ....+.+.++..  .+...|  ..|
T Consensus        69 ~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~  145 (402)
T 1dlj_A           69 AAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRE  145 (402)
T ss_dssp             HHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCT
T ss_pred             HHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccC
Confidence            56789999999998753         146778888888 888887764 23222 223555555332  222222  122


Q ss_pred             CCC-----CCEEEEEeCCCC----CHHHHHHHHHHHHhcC-C-c-eEEeCCc-cc----chhhhhH---HHHHHHHHHHH
Q 009395          289 AHV-----MPLLEIVRTNQT----SPQVIVDLLDIGKKIK-K-T-PIVVGNC-TG----FAVNRMF---FPYTQAAFLLV  348 (535)
Q Consensus       289 ~~~-----~~lveiv~~~~t----s~e~~~~~~~l~~~lG-k-~-~i~v~d~-~G----~i~nri~---~~~~~ea~~l~  348 (535)
                      ...     .+--.++.+...    ..+..+.+.+++...+ + . ++++++. .+    ++.|-+.   .++++|+..+.
T Consensus       146 G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~  225 (402)
T 1dlj_A          146 SKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYA  225 (402)
T ss_dssp             TSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211     010122333221    1255677777776533 2 2 5666552 12    2334332   35689999888


Q ss_pred             H-cCCCHHHHHHHHH
Q 009395          349 E-RGTDLYLIDRAIT  362 (535)
Q Consensus       349 ~-~G~~~~~ID~a~~  362 (535)
                      + .|++++++..++.
T Consensus       226 ~~~Gid~~~v~~~~~  240 (402)
T 1dlj_A          226 ESRKLNSHMIIQGIS  240 (402)
T ss_dssp             HHTTCCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHhc
Confidence            6 6999999999885

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=99.21  E-value=8.7e-12  Score=122.49  Aligned_cols=91  Identities=21%  Similarity=0.184  Sum_probs=82.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+||  ++++++|.++|++++..+ |                                   
T Consensus       186 llltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~-~-----------------------------------  227 (276)
T 3rrv_A          186 YALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELP-Q-----------------------------------  227 (276)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            47899999999999999999999  899999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQR  129 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr  129 (535)
                      .+...+|++++.+...+++++++.|...+..++.|+|+++++.+|++||
T Consensus       228 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR  276 (276)
T 3rrv_A          228 QAVESTKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN  276 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence            2666789999988887899999999999999999999999999999986

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=99.21  E-value=6.2e-12  Score=124.22  Aligned_cols=91  Identities=15%  Similarity=0.162  Sum_probs=81.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       171 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~-p-----------------------------------  214 (287)
T 3gkb_A          171 VVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALP-D-----------------------------------  214 (287)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC-T-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~  130 (535)
                      .+...+|++++..   ..+++++.|.+.|..++.|+|+++++.+|++||+
T Consensus       215 ~a~~~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~  261 (287)
T 3gkb_A          215 GVIEAAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGA  261 (287)
T ss_dssp             THHHHHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence            3667788888764   3468999999999999999999999999999986

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.20  E-value=6.7e-11  Score=118.62  Aligned_cols=168  Identities=11%  Similarity=0.013  Sum_probs=106.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhC-----C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHhhhcccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILS-----N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE-KFEKTISLLTGV  218 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~-----G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~~i~~~  218 (535)
                      ..+||+|||+|.||+.+|..|+++     | ++|++||+ ++.++...+.          .|..... .-......+..+
T Consensus         7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~   75 (317)
T 2qyt_A            7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAA----------GGLRVVTPSRDFLARPTCVT   75 (317)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHH----------TSEEEECSSCEEEECCSEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhc----------CCeEEEeCCCCeEEecceEe
Confidence            346899999999999999999999     9 99999999 6666544310          1210000 000000012223


Q ss_pred             cCcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEEeecccCCCCC------
Q 009395          219 LDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHFFSPAHV------  291 (535)
Q Consensus       219 ~~~~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h~~~P~~~------  291 (535)
                      ++.+.+.++|+||.|||...  ..++++++.+.++++++|++.+.++.. +.+.+.++.. +++...++.++..      
T Consensus        76 ~~~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~-~v~~g~~~~~a~~~~pg~~  152 (317)
T 2qyt_A           76 DNPAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDT-VVWKGCVYISARKSAPGLI  152 (317)
T ss_dssp             SCHHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTT-TBCEEEEEEEEEEEETTEE
T ss_pred             cCccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCC-cEEEEEEEEEEEEcCCCEE
Confidence            44556789999999998754  378888999888888888887777776 4566655432 3333333322211      


Q ss_pred             ---CC-EEEEEe-C-CCCCHHHHHHHHHHHHhcCCceEEeCCc
Q 009395          292 ---MP-LLEIVR-T-NQTSPQVIVDLLDIGKKIKKTPIVVGNC  328 (535)
Q Consensus       292 ---~~-lveiv~-~-~~ts~e~~~~~~~l~~~lGk~~i~v~d~  328 (535)
                         .. .+.++. . +..+.+.. .+.++++..|....+++|.
T Consensus       153 ~~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di  194 (317)
T 2qyt_A          153 TLEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDI  194 (317)
T ss_dssp             EEEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCH
T ss_pred             EEcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHH
Confidence               11 122132 2 33456777 8899999999877776663

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=99.20  E-value=1e-11  Score=122.78  Aligned_cols=90  Identities=21%  Similarity=0.220  Sum_probs=82.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.|.++|++++..+ |                                   
T Consensus       168 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~-p-----------------------------------  211 (289)
T 3h0u_A          168 AVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFP-R-----------------------------------  211 (289)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFA  127 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~  127 (535)
                      .+...+|++++.+.. +++++++.|.+.|..++.|+|+++++++|++
T Consensus       212 ~a~~~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle  257 (289)
T 3h0u_A          212 DALIAAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK  257 (289)
T ss_dssp             HHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence            266788999998887 8999999999999999999999999999999

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=99.20  E-value=2.7e-11  Score=120.49  Aligned_cols=123  Identities=20%  Similarity=0.299  Sum_probs=83.7

Q ss_pred             CCCCCcceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          142 LAPRRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       142 ~~~~~~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      .+..+++||+|||+|.||.++|..++.+|+  +|+++|++++....+. .+.+     ..            ..+++.++
T Consensus         9 ~~~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~-dl~~-----~~------------~~~i~~t~   70 (303)
T 2i6t_A            9 HENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATM-DLEI-----FN------------LPNVEISK   70 (303)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHH-HHHH-----HT------------CTTEEEES
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHH-HHhh-----hc------------CCCeEEeC
Confidence            345567899999999999999999999999  9999999986322222 1111     00            02566667


Q ss_pred             CcccccCCCEEEEec-------------cCChHHHHHHHHHHHhhcCCCcee--eecCCcCcHHHHHhhcCC-CCcEEee
Q 009395          220 DYESFKDVDMVIEAI-------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYS-KDRIVGA  283 (535)
Q Consensus       220 ~~~~~~~aDlVI~av-------------pe~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~~-~~r~ig~  283 (535)
                      +++++++||+||+++             .++..+++++++++.+++ +++++  +||.+.+-...+...... |.|++|+
T Consensus        71 d~~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~  149 (303)
T 2i6t_A           71 DLSASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI  149 (303)
T ss_dssp             CGGGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CHHHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence            888999999999997             888999999999999998 55544  677554322222232222 5688887

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=99.20  E-value=1.1e-11  Score=121.49  Aligned_cols=94  Identities=17%  Similarity=0.137  Sum_probs=76.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  214 (272)
T 3qk8_A          171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGA-Q-----------------------------------  214 (272)
T ss_dssp             HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVV---SGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~---~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .|...+|++++....   .+++..++.|    ..++.|+|+++++++|++||+++..
T Consensus       215 ~a~~~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~f~  267 (272)
T 3qk8_A          215 NAIRWTKRSLNHWYRMFGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPARFT  267 (272)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCCC-
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCCCC
Confidence            256678888876543   2344444444    5788999999999999999988654

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=99.20  E-value=5.7e-12  Score=124.00  Aligned_cols=93  Identities=18%  Similarity=0.185  Sum_probs=68.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.++|++++..+ |                                   
T Consensus       170 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-p-----------------------------------  213 (276)
T 2j5i_A          170 YIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKN-P-----------------------------------  213 (276)
T ss_dssp             HHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHH--hcCH-HHHHHHHHHhhcc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKL--LRSE-TCKSLVHIFFAQR  129 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~--~~s~-e~~~~i~aF~~kr  129 (535)
                      .+...+|++++.+...+++++++.|.+.+..+  +.|+ |+++++.+|++||
T Consensus       214 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr  265 (276)
T 2j5i_A          214 VVLRAAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDK  265 (276)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcc
Confidence            26667899999988888999999998888776  6799 9999999999988

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.19  E-value=6.1e-11  Score=119.24  Aligned_cols=171  Identities=16%  Similarity=0.118  Sum_probs=114.0

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      ..+||+|||+|.||+.+|..|+++|++|++| ++++.++...+           .|......-......+..+++.+.+.
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~   85 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEA-----------TGLRLETQSFDEQVKVSASSDPSAVQ   85 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH-----------HCEEEECSSCEEEECCEEESCGGGGT
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh-----------CCeEEEcCCCcEEEeeeeeCCHHHcC
Confidence            4679999999999999999999999999999 99888765542           11100000000112344556677788


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HHHHhhcCCCCcEEeecc------cCCCCC---C-CE
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL-NLIGERTYSKDRIVGAHF------FSPAHV---M-PL  294 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~l~~~~~~~~r~ig~h~------~~P~~~---~-~l  294 (535)
                      ++|+||.|||..  ...++++++.+.++++++|++.+.++.. +.+.+.++  .++++...      ..|...   . ..
T Consensus        86 ~~D~vilavk~~--~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g~  161 (318)
T 3hwr_A           86 GADLVLFCVKST--DTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRGE  161 (318)
T ss_dssp             TCSEEEECCCGG--GHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEcccc--cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCce
Confidence            999999999875  4578899999999999999999999987 46666665  45554321      123221   1 11


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhH
Q 009395          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMF  337 (535)
Q Consensus       295 veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~  337 (535)
                      +. + +.   .+..+.+.++|...|.......|..+....-++
T Consensus       162 ~~-i-g~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~Kl~  199 (318)
T 3hwr_A          162 LV-I-EP---TSHGANLAAIFAAAGVPVETSDNVRGALWAKLI  199 (318)
T ss_dssp             EE-E-CC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHHHH
T ss_pred             EE-E-cC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHHHH
Confidence            11 2 22   234567788889888887777776665444443

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=99.19  E-value=7.3e-12  Score=122.00  Aligned_cols=90  Identities=23%  Similarity=0.304  Sum_probs=53.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       169 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  212 (258)
T 3lao_A          169 YILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAA-P-----------------------------------  212 (258)
T ss_dssp             HHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF  126 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~  126 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|+
T Consensus       213 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~  258 (258)
T 3lao_A          213 LAVRAALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV  258 (258)
T ss_dssp             HHHHHHHHHHHHHTC-------------------------------
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence            2667899999999888899999999999999999999999999995

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.19  E-value=1.7e-11  Score=121.42  Aligned_cols=166  Identities=13%  Similarity=-0.009  Sum_probs=107.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +||+|||+|.||+.+|..|+++|++|++||++++.++..           ...+... .   .....+. .++.+.++++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~~~-~---~~~~~~~-~~~~~~~~~~   64 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVETDG-S---IFNESLT-ANDPDFLATS   64 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECTTS-C---EEEEEEE-ESCHHHHHTC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcCCC-c---eeeeeee-ecCccccCCC
Confidence            479999999999999999999999999999997654321           0111000 0   0000111 2334567889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH-HHHhhcCCCCcEE-eeccc-----CCCCC----CCEEE
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIV-GAHFF-----SPAHV----MPLLE  296 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~i-g~h~~-----~P~~~----~~lve  296 (535)
                      |+||.|+|...  ..++++++.+.+++++++++.+.++... .+.+.++  . ++ |.+++     .| ..    ...+.
T Consensus        65 d~vi~~v~~~~--~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p-~~~~~~~g~~~  138 (291)
T 1ks9_A           65 DLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--P-LLMGTTTHAARRDGN-VIIHVANGITH  138 (291)
T ss_dssp             SEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--C-EEEEEECCEEEEETT-EEEEEECCCEE
T ss_pred             CEEEEEecHHh--HHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--C-eEEEEEeEccEEcCC-EEEEecccceE
Confidence            99999999763  4788899999999899888877777553 4444443  2 44 33322     34 11    11133


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhh
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM  336 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri  336 (535)
                      +.+.+ .+++..+.+.++++.+|..+.+++|..+...+.+
T Consensus       139 i~~~~-~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl  177 (291)
T 1ks9_A          139 IGPAR-QQDGDYSYLADILQTVLPDVAWHNNIRAELWRKL  177 (291)
T ss_dssp             EEESS-GGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHH
T ss_pred             EccCC-CCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHH
Confidence            33322 2456678899999999998888877544444433

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.18  E-value=1.1e-10  Score=120.11  Aligned_cols=169  Identities=12%  Similarity=-0.007  Sum_probs=107.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC-------CcEEEEeCCHH-----HHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc
Q 009395          147 VKKVAILGGGLMGSGIATALILSN-------YPVILKEVNEK-----FLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL  214 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G-------~~V~l~d~~~~-----~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~  214 (535)
                      ++||+|||+|.||++||..|+++|       ++|++||++++     .++...+.       ......+...   ....+
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~~~---~~~~~   90 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNK-------HENTKYLKGV---PLPHN   90 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHH-------CBCTTTSTTC---BCCTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhc-------CcccccCCcc---cCcCC
Confidence            468999999999999999999999       99999999987     54433210       0000000000   00123


Q ss_pred             cccccCcc-cccCCCEEEEeccCChHHHHHHHHHHHh----hcCCCceeeecCCcCcH-----HHH----HhhcCCCCcE
Q 009395          215 LTGVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEK----YCPPHCILASNTSTIDL-----NLI----GERTYSKDRI  280 (535)
Q Consensus       215 i~~~~~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~----~~~~~~ii~s~tS~~~~-----~~l----~~~~~~~~r~  280 (535)
                      +..+++.+ .+++||+||+|||+  ....+++.++.+    .++++++++|.++++++     ..+    .+.++.+ ..
T Consensus        91 i~~~~~~~ea~~~aDvVilav~~--~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~  167 (375)
T 1yj8_A           91 IVAHSDLASVINDADLLIFIVPC--QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIP-CS  167 (375)
T ss_dssp             EEEESSTHHHHTTCSEEEECCCH--HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSC-EE
T ss_pred             eEEECCHHHHHcCCCEEEEcCCH--HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCC-EE
Confidence            45555664 47899999999985  567889999988    88889999888877654     122    2222211 11


Q ss_pred             EeecccCCC---CCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395          281 VGAHFFSPA---HVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       281 ig~h~~~P~---~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                      +...|..+.   ...+...++.+  .+++..+.+.+++...|..+....|..|
T Consensus       168 v~~gp~~a~~v~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~~~~~~~di~~  218 (375)
T 1yj8_A          168 ALSGANIAMDVAMENFSEATIGG--NDKDSLVIWQRVFDLPYFKINCVNETIE  218 (375)
T ss_dssp             EEECSCCHHHHHTTCCEEEEEEC--SCHHHHHHHHHHHCBTTEEEEEESCSHH
T ss_pred             EEeCCchHHHHHhCCCeEEEEec--CCHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence            122222211   11222222232  3678899999999999988888877544

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.17  E-value=6.9e-10  Score=115.08  Aligned_cols=200  Identities=17%  Similarity=0.150  Sum_probs=127.2

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTG  217 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~  217 (535)
                      ++.+|+|||+|.+|..+|.+|+++|++|+.+|+|+++++...+.        +...+.+.++.            +++++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~------------g~l~~   87 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSS------------GRLSF   87 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT------------TCEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHc------------CCeeE
Confidence            57899999999999999999999999999999999998876532        12222222222            46777


Q ss_pred             ccCcc-cccCCCEEEEeccC--------ChHHHHHHHHHHHhhcC---CCceeeecCCcCcHH---HHH-hhc----CCC
Q 009395          218 VLDYE-SFKDVDMVIEAIIE--------NVSLKQQIFADLEKYCP---PHCILASNTSTIDLN---LIG-ERT----YSK  277 (535)
Q Consensus       218 ~~~~~-~~~~aDlVI~avpe--------~~~~k~~v~~~l~~~~~---~~~ii~s~tS~~~~~---~l~-~~~----~~~  277 (535)
                      +++.+ ++++||++|.|||.        |+.......+.|.++++   ++.+|+ .-||+++.   ++. ..+    +..
T Consensus        88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV-~eSTVppGtte~~~~~~l~~~~~~~  166 (444)
T 3vtf_A           88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVV-VKSTVPPGTTEGLVARAVAEEAGGV  166 (444)
T ss_dssp             CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEE-ECSCCCTTTTTTHHHHHHHTTTTTC
T ss_pred             EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEE-EeCCCCCchHHHHHHHHHHHhCCCC
Confidence            88875 58999999999963        44556677777777764   455554 45555553   221 111    111


Q ss_pred             CcEEeecccCCCCCCC---------EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc---chhhhhHH----HHH
Q 009395          278 DRIVGAHFFSPAHVMP---------LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG---FAVNRMFF----PYT  341 (535)
Q Consensus       278 ~r~ig~h~~~P~~~~~---------lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G---~i~nri~~----~~~  341 (535)
                      .-.++.   +|-...+         .--++-| ..++...+.+.++++.+....++++-...   -++.+.+.    +++
T Consensus       167 ~f~v~~---~PErl~eG~a~~d~~~~~riViG-~~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~  242 (444)
T 3vtf_A          167 KFSVAS---NPEFLREGSALEDFFKPDRIVIG-AGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFA  242 (444)
T ss_dssp             CCEEEE---CCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cceeec---CcccccCCccccccccCCcEEEc-CCCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHH
Confidence            111221   3322110         0012222 13677888889999888766555442112   13333332    568


Q ss_pred             HHHHHHHH-cCCCHHHHHHHHH
Q 009395          342 QAAFLLVE-RGTDLYLIDRAIT  362 (535)
Q Consensus       342 ~ea~~l~~-~G~~~~~ID~a~~  362 (535)
                      ||...+.+ .|++..+|-+++.
T Consensus       243 NEla~ice~~GiDv~eV~~a~~  264 (444)
T 3vtf_A          243 NEVGLLAKRLGVDTYRVFEAVG  264 (444)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHhc
Confidence            99988887 6999999888874

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=99.16  E-value=1.1e-11  Score=121.09  Aligned_cols=91  Identities=11%  Similarity=0.058  Sum_probs=71.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.|.++|++++..+ |                                   
T Consensus       167 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  210 (263)
T 3l3s_A          167 MALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARN-Q-----------------------------------  210 (263)
T ss_dssp             HHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFA  127 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~  127 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+|+++++++|.+
T Consensus       211 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~  257 (263)
T 3l3s_A          211 APLRRGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEG  257 (263)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc
Confidence            26678999999999889999999999999999999999999999965

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.16  E-value=1.8e-10  Score=116.40  Aligned_cols=163  Identities=13%  Similarity=0.067  Sum_probs=104.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhccccccc--Cc-
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEV--NEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVL--DY-  221 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~--~~-  221 (535)
                      +||+|||+|.||..+|..|+++|++|++||+  +++.++...           +.|. +.. .. . +..+..++  ++ 
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~-g~-~-~~~~~~~~~~~~~   66 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIS-----------AGREHPRL-GV-K-LNGVEIFWPEQLE   66 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHH-----------TTCCBTTT-TB-C-CCSEEEECGGGHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHH-----------HhCcCccc-Cc-c-ccceEEecHHhHH
Confidence            4799999999999999999999999999999  888776543           1221 000 00 0 01223343  44 


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC------cHHHHHhhcCC--CCcEEeecccCCCCC--
Q 009395          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI------DLNLIGERTYS--KDRIVGAHFFSPAHV--  291 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~------~~~~l~~~~~~--~~r~ig~h~~~P~~~--  291 (535)
                      +.+++||+||.|+|..  ...+++.++.+ +++++++++.+.++      ....+.+.++.  +..........|...  
T Consensus        67 ~~~~~~D~vi~~v~~~--~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~  143 (335)
T 1txg_A           67 KCLENAEVVLLGVSTD--GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIARE  143 (335)
T ss_dssp             HHHTTCSEEEECSCGG--GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHH
T ss_pred             HHHhcCCEEEEcCChH--HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHH
Confidence            3478999999999865  45788889988 88888888776565      33455555532  110000111123221  


Q ss_pred             ---CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCc
Q 009395          292 ---MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNC  328 (535)
Q Consensus       292 ---~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~  328 (535)
                         .....++.+. .+++..+.+.++++..|..+.++.|.
T Consensus       144 ~~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di  182 (335)
T 1txg_A          144 VAKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDI  182 (335)
T ss_dssp             HHTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCH
T ss_pred             HHccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCch
Confidence               1112233332 36788999999999999877777764

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=99.16  E-value=2.5e-11  Score=118.63  Aligned_cols=96  Identities=15%  Similarity=0.085  Sum_probs=78.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+.+  +.+.+++++++..+ |                                   
T Consensus       163 llltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~-p-----------------------------------  204 (267)
T 3hp0_A          163 MTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLN-K-----------------------------------  204 (267)
T ss_dssp             HHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCC-H-----------------------------------
Confidence            578999999999999999999998654  34678888888852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP  135 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~  135 (535)
                      .|...+|++++... ...+++++.|.+.+..++.|+|+++++.+|++||++++.+
T Consensus       205 ~a~~~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~~  258 (267)
T 3hp0_A          205 KGIAHYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWED  258 (267)
T ss_dssp             HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC----
T ss_pred             HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence            26667889888864 3467788899999999999999999999999999987653

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=99.14  E-value=2.6e-11  Score=118.17  Aligned_cols=92  Identities=17%  Similarity=0.209  Sum_probs=78.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|++    ++++.++|++++..+ |                                   
T Consensus       171 llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~-p-----------------------------------  210 (264)
T 3he2_A          171 MLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLA-P-----------------------------------  210 (264)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCC-H-----------------------------------
Confidence            578999999999999999999986    478899999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++..  .+++++++.|.+.|..++.|+|+++++.+|++||+++..
T Consensus       211 ~a~~~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~  262 (264)
T 3he2_A          211 LAIQHAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQ  262 (264)
T ss_dssp             HHHHHHHHHHHTS--SCSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence            2666788888876  356778889999999999999999999999999988653

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=99.13  E-value=1.1e-11  Score=120.37  Aligned_cols=96  Identities=21%  Similarity=0.196  Sum_probs=68.4

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  199 (256)
T 3pe8_A          156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNN-Q-----------------------------------  199 (256)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHH---hcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKL---LRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~---~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.+...+++++++.|...|...   ..++|.++++.+|++|+++.
T Consensus       200 ~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~  254 (256)
T 3pe8_A          200 KAVRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQ  254 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCcc
Confidence            26677899999988888999999999998765   55667799999999998875

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=99.12  E-value=3.2e-10  Score=113.93  Aligned_cols=140  Identities=21%  Similarity=0.244  Sum_probs=94.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.||.++|..|+.+|+  +|+++|+++++++.....+.+...    ..  .       ..++.. ++.++++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~----~~--~-------~~~i~~-~d~~~~~   66 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP----FT--R-------RANIYA-GDYADLK   66 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG----GS--C-------CCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh----hc--C-------CcEEEe-CCHHHhC
Confidence            489999999999999999999999  999999999887654433222211    00  0       113333 3577899


Q ss_pred             CCCEEEEeccCC--------------hHHHHHHHHHHHhhcCCCcee--eecCCcCcHHHHH-hhcC-CCCcEEeecccC
Q 009395          226 DVDMVIEAIIEN--------------VSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIG-ERTY-SKDRIVGAHFFS  287 (535)
Q Consensus       226 ~aDlVI~avpe~--------------~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~-~~~~-~~~r~ig~h~~~  287 (535)
                      +||+||+|++..              ..+++++++.+.++++ ++++  +||.++.. +.+. .... .|.|++|+    
T Consensus        67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~-~~~~~~~~~~~~~rviG~----  140 (319)
T 1a5z_A           67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVTNPVDVL-TYFFLKESGMDPRKVFGS----  140 (319)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHH-HHHHHHHHTCCTTTEEEC----
T ss_pred             CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeCCcHHHH-HHHHHHHhCCChhhEEee----
Confidence            999999999752              2457888899998864 5543  45554432 3333 3222 46788876    


Q ss_pred             CCCCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCc
Q 009395          288 PAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKT  321 (535)
Q Consensus       288 P~~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~  321 (535)
                                    .|..++......+.+.+|..
T Consensus       141 --------------~t~ld~~r~~~~la~~lgv~  160 (319)
T 1a5z_A          141 --------------GTVLDTARLRTLIAQHCGFS  160 (319)
T ss_dssp             --------------TTHHHHHHHHHHHHHHHTCC
T ss_pred             --------------CccHHHHHHHHHHHHHhCcC
Confidence                          24556666666677777743

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=99.10  E-value=3.8e-11  Score=116.64  Aligned_cols=91  Identities=13%  Similarity=0.135  Sum_probs=72.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++.+.+.+++++++..+ |                                   
T Consensus       159 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  202 (254)
T 3isa_A          159 ILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALD-P-----------------------------------  202 (254)
T ss_dssp             HHTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             HHHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|+++.       +..++.|.+.|..++.|+|+++++.+|++||+++..
T Consensus       203 ~a~~~~K~~l~-------~~~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~  249 (254)
T 3isa_A          203 ATRATLHRVLR-------DDHDDADLAALARSAAQPGFKARIRDYLAQPAAEGH  249 (254)
T ss_dssp             HHHHHHHHHHS-------CCCHHHHHHHHHHHHHSTTHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHh-------hhhHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCC
Confidence            14445666663       234567888999999999999999999999988754

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.09  E-value=1e-10  Score=129.86  Aligned_cols=87  Identities=16%  Similarity=0.120  Sum_probs=81.3

Q ss_pred             ccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccCcc
Q 009395          329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI  402 (535)
Q Consensus       329 ~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  402 (535)
                      .+.+.+|++.+++||+++++++|+  +++|||.+|. |+|||.   |||+++|.+|++.+.+.++.++..+|+++.|+++
T Consensus       624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~p~~~  703 (725)
T 2wtb_A          624 EKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFKPCAF  703 (725)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCGGGCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCCCCCCCHH
Confidence            457899999999999999999997  9999999999 999999   9999999999999999999999999988889999


Q ss_pred             HHHHHHCCCCCccCCceeee
Q 009395          403 IPIMQEDKRAGETTRKGFYL  422 (535)
Q Consensus       403 l~~~~~~G~~G~k~g~GFY~  422 (535)
                      |.+|+++|       ++||.
T Consensus       704 l~~~~~~g-------~~f~~  716 (725)
T 2wtb_A          704 LAERGSKG-------VLLSA  716 (725)
T ss_dssp             HHHHHHHT-------CCSSS
T ss_pred             HHHHHHcC-------CCccc
Confidence            99999986       67985

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=118.92  Aligned_cols=131  Identities=15%  Similarity=0.118  Sum_probs=83.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHH--------------HhhccC-------CCcchhhccc-CCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWAL--------------DILEHR-------RPWVATLYKT-DKIEP   58 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~--------------~la~~~-------~p~~~~~~~~-~~~~~   58 (535)
                      |+|||++++|+||+++||||+|||++++.+.+..+++              .+....       .......... ..+..
T Consensus       165 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f~~  244 (363)
T 3bpt_A          165 LALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSA  244 (363)
T ss_dssp             HHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHTTS
T ss_pred             HHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHhCC
Confidence            5789999999999999999999999998765544322              111000       0000000000 00000


Q ss_pred             chHHHHHHH--------HHHHHHHHh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHh-hc
Q 009395           59 LGEAREIFK--------FARAQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF-AQ  128 (535)
Q Consensus        59 ~~~~~~~~~--------~~~~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~-~k  128 (535)
                      . .....++        ++++...+- .+++.+...+|++++.+...+++++++.|...+..++.|+|+++++++|+ +|
T Consensus       245 ~-~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl~eK  323 (363)
T 3bpt_A          245 N-TVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDK  323 (363)
T ss_dssp             S-SHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHTTSC
T ss_pred             C-CHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhheeeCC
Confidence            0 0011111        111222222 23556888999999999888999999999999999999999999999999 67


Q ss_pred             -ccCC
Q 009395          129 -RGTS  132 (535)
Q Consensus       129 -r~~~  132 (535)
                       |+++
T Consensus       324 ~r~P~  328 (363)
T 3bpt_A          324 DQSPK  328 (363)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence             5554

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.08  E-value=1.3e-10  Score=128.91  Aligned_cols=86  Identities=19%  Similarity=0.299  Sum_probs=79.9

Q ss_pred             ccchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccCcc
Q 009395          329 TGFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMI  402 (535)
Q Consensus       329 ~G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~  402 (535)
                      .+.+.+|++.+++||+++++++|+  +++|||.+|. |+|||.   |||+++|.+|++.+.+.++.+ ..+|+++.|+++
T Consensus       624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~~~~p~~~  702 (715)
T 1wdk_A          624 DEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAK  702 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCCCCCCCHH
Confidence            567999999999999999999997  9999999999 999999   999999999999999999999 889988889999


Q ss_pred             HHHHHHCCCCCccCCceeee
Q 009395          403 IPIMQEDKRAGETTRKGFYL  422 (535)
Q Consensus       403 l~~~~~~G~~G~k~g~GFY~  422 (535)
                      |.+|+++|       ++||+
T Consensus       703 l~~~~~~g-------~~f~~  715 (715)
T 1wdk_A          703 LREMAKNG-------QSFFG  715 (715)
T ss_dssp             HHHHHHTT-------CCSCC
T ss_pred             HHHHHHcC-------CCCCC
Confidence            99999986       67873

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.07  E-value=3.1e-10  Score=114.89  Aligned_cols=169  Identities=14%  Similarity=0.151  Sum_probs=107.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++||+|||+|.||+.+|..|+++|++|++||++ +..+...           +.|......-......+..+++.+++.+
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~-----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~   70 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQ-----------TAGLRLTEDGATHTLPVRATHDAAALGE   70 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHH-----------HTCEEEEETTEEEEECCEEESCHHHHCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHH-----------HCCCEEecCCCeEEEeeeEECCHHHcCC
Confidence            568999999999999999999999999999995 4444322           1221000000000112334556666789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc-------------------H-HHHHhhcCCCCcEEeec-c
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-------------------L-NLIGERTYSKDRIVGAH-F  285 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-------------------~-~~l~~~~~~~~r~ig~h-~  285 (535)
                      +|+||.|||..  ...++++++.+.++++++|++.+.+++                   . +.+.+.++. .++++.. +
T Consensus        71 ~D~Vilavk~~--~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~-~~v~~gv~~  147 (335)
T 3ghy_A           71 QDVVIVAVKAP--ALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPT-RHVLGCVVH  147 (335)
T ss_dssp             CSEEEECCCHH--HHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCG-GGEEEEEEC
T ss_pred             CCEEEEeCCch--hHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCc-ccEEEEEEE
Confidence            99999999863  456888889888999998888887753                   1 245555542 3554332 1


Q ss_pred             -----cCCCCC----CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCccc
Q 009395          286 -----FSPAHV----MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTG  330 (535)
Q Consensus       286 -----~~P~~~----~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G  330 (535)
                           ..|...    ...+.+-..+..+.+..+.+.+++...|.......|..+
T Consensus       148 ~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~  201 (335)
T 3ghy_A          148 LTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQR  201 (335)
T ss_dssp             CCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHH
T ss_pred             EEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHH
Confidence                 123211    112223222233457778888999999987777777555

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.64  E-value=1.5e-11  Score=115.19  Aligned_cols=149  Identities=16%  Similarity=0.239  Sum_probs=102.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      .+||+|||+|.||..+|..|.++|++|++||++++ .+...           ..|             +...+..+.+++
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~-----------~~g-------------~~~~~~~~~~~~   73 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLL-----------PRG-------------AEVLCYSEAASR   73 (201)
Confidence            35799999999999999999999999999999876 32211           111             111222345789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--------HHHHhhcCCCCcEEeecccCCCCCCC--E--
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--------NLIGERTYSKDRIVGAHFFSPAHVMP--L--  294 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--------~~l~~~~~~~~r~ig~h~~~P~~~~~--l--  294 (535)
                      ||+||.|+|.. . ...++ ++.. ..++++|++.+++++.        +.+.+.++. .+++...++.|+....  .  
T Consensus        74 aDvVilav~~~-~-~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~  148 (201)
T 2yjz_A           74 SDVIVLAVHRE-H-YDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLD  148 (201)
Confidence            99999999864 3 34555 4543 3467788887777753        455554432 4677777777765422  1  


Q ss_pred             ---EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          295 ---LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       295 ---veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                         ..++.+.  +++..+.+.++++.+|+.++.+++
T Consensus       149 g~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~G~  182 (201)
T 2yjz_A          149 ASRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQGS  182 (201)
Confidence               1344443  578889999999999999998875

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=99.06  E-value=4.8e-11  Score=115.08  Aligned_cols=90  Identities=19%  Similarity=0.196  Sum_probs=80.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++++.+++++++..+ |                                   
T Consensus       154 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  197 (243)
T 2q35_A          154 MIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSP-R-----------------------------------  197 (243)
T ss_dssp             HHHHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFF  126 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~  126 (535)
                      .+...+|++++.....+++++++.|.+.+..++.|+|+++++.+||
T Consensus       198 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~  243 (243)
T 2q35_A          198 LSLVALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF  243 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence            1566788999888777788999999999999999999999999885

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=99.05  E-value=4.3e-10  Score=112.39  Aligned_cols=123  Identities=20%  Similarity=0.302  Sum_probs=82.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+...            ......+++.+++++++++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~------------~~~~~~~i~~t~d~~a~~~   70 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP------------IEGFDVRVTGTNNYADTAN   70 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHh------------hcCCCeEEEECCCHHHHCC
Confidence            589999999999999999999997 999999998877643222211110            0111235666678888999


Q ss_pred             CCEEEEec--------------cCChHHHHHHHHHHHhhcCCCcee--eecCCcCcHHHHHhhcC-CCCcEEee
Q 009395          227 VDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTY-SKDRIVGA  283 (535)
Q Consensus       227 aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~-~~~r~ig~  283 (535)
                      ||+||+++              .++..+++++++.+.+++ +++++  +||........+....+ .|.|++|+
T Consensus        71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNPv~~~t~~~~~~~~~~~~rviG~  143 (309)
T 1ur5_A           71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNPLDAMTYLAAEVSGFPKERVIGQ  143 (309)
T ss_dssp             CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCCchHHHHHHHHHHcCCCHHHEEEC
Confidence            99999997              344578888999999887 56644  44433222112222222 25678886

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.03  E-value=5e-09  Score=104.92  Aligned_cols=170  Identities=13%  Similarity=0.054  Sum_probs=110.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+|||+|.||+.+|..|+++|++|++|++++  .+...           +.|.. ....-...+..+..+++.+.+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~-----------~~g~~~~~~~g~~~~~~~~~~~~~~~~~~   69 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIA-----------GNGLKVFSINGDFTLPHVKGYRAPEEIGP   69 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHH-----------HTCEEEEETTCCEEESCCCEESCHHHHCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHH-----------hCCCEEEcCCCeEEEeeceeecCHHHcCC
Confidence            589999999999999999999999999999985  23221           12210 00000000012333456666789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc-HHHHHhhcCCCCcEEeecc------cCCCC---CC-CEE
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAHF------FSPAH---VM-PLL  295 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~ig~h~------~~P~~---~~-~lv  295 (535)
                      +|+||.|||..  ...++++++.+.++++++|++...++. .+.+++.++. .++++...      ..|-.   .. ..+
T Consensus        70 ~D~vilavk~~--~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~  146 (312)
T 3hn2_A           70 MDLVLVGLKTF--ANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRI  146 (312)
T ss_dssp             CSEEEECCCGG--GGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEE
T ss_pred             CCEEEEecCCC--CcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeE
Confidence            99999999854  345889999999999999999999986 4567776643 35554322      12321   11 122


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchh
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAV  333 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~  333 (535)
                      .+-..+..+.+..+.+.+++...|.......|..+..+
T Consensus       147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w  184 (312)
T 3hn2_A          147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDLKRARW  184 (312)
T ss_dssp             EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCHHHHHH
T ss_pred             EEecCCCCccHHHHHHHHHHHhCCCCcEEChHHHHHHH
Confidence            33333344567788899999999987777666544433

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=99.01  E-value=2.2e-10  Score=118.22  Aligned_cols=130  Identities=9%  Similarity=-0.013  Sum_probs=85.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHH---H----------------HHHHHHHhhccCC---Ccchh---hcccC-
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVS---T----------------ARQWALDILEHRR---PWVAT---LYKTD-   54 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~---~----------------a~~~a~~la~~~~---p~~~~---~~~~~-   54 (535)
                      |+|||++|+|+||+++||||+|||++++.+   +                +.++++++.....   |...-   ....+ 
T Consensus       205 l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~~~~I~~  284 (407)
T 3ju1_A          205 LGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAESQEMIDR  284 (407)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHTHHHHHH
T ss_pred             HHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHHHHHHHH
Confidence            578999999999999999999999999877   3                4444433322110   00000   00000 


Q ss_pred             CCCCchHHHHHHH----------HHHHHHHH-hCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHH
Q 009395           55 KIEPLGEAREIFK----------FARAQARK-QAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVH  123 (535)
Q Consensus        55 ~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~  123 (535)
                      .+. . ....++.          +++....+ ..+++.+...+|++++++...+++++++.|...+..++.++|++++++
T Consensus       285 ~f~-~-sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGvr  362 (407)
T 3ju1_A          285 LMA-G-SLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGDFCEGVR  362 (407)
T ss_dssp             HTC-S-CHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSSHHHHHH
T ss_pred             Hhc-C-CHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            000 0 0000110          11100111 124677899999999999999999999999999999999999999999


Q ss_pred             HHh-hc-ccCC
Q 009395          124 IFF-AQ-RGTS  132 (535)
Q Consensus       124 aF~-~k-r~~~  132 (535)
                      +|+ +| |+++
T Consensus       363 AflidKdr~P~  373 (407)
T 3ju1_A          363 ALLIDKDKQPK  373 (407)
T ss_dssp             HHTTSCCCCCC
T ss_pred             HHHhcCCcCCC
Confidence            998 77 5544

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=99.00  E-value=1.4e-09  Score=108.55  Aligned_cols=120  Identities=19%  Similarity=0.303  Sum_probs=81.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.||.++|..++.+|+  +|+++|+++++++.....+        .... .   . ....++.. +++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l--------~~~~-~---~-~~~~~i~~-~~~~a~~   66 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDI--------AHAA-P---V-SHGTRVWH-GGHSELA   66 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHH--------TTSC-C---T-TSCCEEEE-ECGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhh--------hhhh-h---h-cCCeEEEE-CCHHHhC
Confidence            489999999999999999999999  9999999988765322111        1110 0   0 00012332 4678899


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCcee--eecCCcCcHHHHHhhcCCCCcEEee
Q 009395          226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCIL--ASNTSTIDLNLIGERTYSKDRIVGA  283 (535)
Q Consensus       226 ~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii--~s~tS~~~~~~l~~~~~~~~r~ig~  283 (535)
                      +||+||+++  |.            +..+++++++++.++. +++++  +||.+.+....+++.. .|.|++|+
T Consensus        67 ~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~  138 (304)
T 2v6b_A           67 DAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS  138 (304)
T ss_dssp             TCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred             CCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence            999999999  32            4457789999999985 56544  4666554444444444 67788886

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=98.97  E-value=2.5e-10  Score=112.03  Aligned_cols=86  Identities=22%  Similarity=0.349  Sum_probs=75.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       179 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  222 (277)
T 4di1_A          179 LVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECP-P-----------------------------------  222 (277)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.+...+++++++.|.+.|..++.|+          +||+++
T Consensus       223 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~----------ekR~P~  264 (277)
T 4di1_A          223 RALAAAKAVINDVFELEATERAAAERRRYVELFAAG----------QRGPDG  264 (277)
T ss_dssp             HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG----------GC----
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc----------ccCCCc
Confidence            267789999999999999999999999999999998          777776

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.93  E-value=2.7e-09  Score=106.46  Aligned_cols=118  Identities=17%  Similarity=0.305  Sum_probs=81.1

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      ||+|||+|.||.+++..++.+|+ +|+++|+++++++.....+.+....   .+         ...+++.+++++++++|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~---~~---------~~~~i~~t~d~~a~~~a   68 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAE---LG---------VDIRISGSNSYEDMRGS   68 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHH---HT---------CCCCEEEESCGGGGTTC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhh---cC---------CCeEEEECCCHHHhCCC
Confidence            69999999999999999998898 7999999988776433222221100   00         11246666778899999


Q ss_pred             CEEEEec--------------cCChHHHHHHHHHHHhhcCCCc--eeeecCCcCcHHHHHhhc----CC-CCcEEee
Q 009395          228 DMVIEAI--------------IENVSLKQQIFADLEKYCPPHC--ILASNTSTIDLNLIGERT----YS-KDRIVGA  283 (535)
Q Consensus       228 DlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~--ii~s~tS~~~~~~l~~~~----~~-~~r~ig~  283 (535)
                      |+||++.              ..+..+++++.+++.+++ +++  |++||    |++.+...+    +. |.|++|+
T Consensus        69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN----Pv~~~t~~~~k~~~~p~~rviG~  140 (308)
T 2d4a_B           69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTN----PVDAMTYVMYKKTGFPRERVIGF  140 (308)
T ss_dssp             SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS----SHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC----chHHHHHHHHHhcCCChhhEEEe
Confidence            9999994              445667889999999987 555  33344    444433322    22 4677776

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.92  E-value=6.7e-09  Score=103.62  Aligned_cols=103  Identities=22%  Similarity=0.315  Sum_probs=71.4

Q ss_pred             CCCcceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          144 PRRVKKVAILGGGLMGSGIATALILSNY-PVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       144 ~~~~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      .++.+||+|||+|.||.++|..++.+|+ +|+++|++  ++.++.....+.+..            .......++..+++
T Consensus         5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~------------~~~~~~~~i~~t~d   72 (315)
T 3tl2_A            5 TIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEAS------------PVQGFDANIIGTSD   72 (315)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHH------------HHHTCCCCEEEESC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhh------------hhccCCCEEEEcCC
Confidence            3456799999999999999999999999 99999999  554443222222111            01111235666778


Q ss_pred             cccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          221 YESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       221 ~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      ++++++||+||+++  |.            +..+.+++.+.+.++.+ +++++
T Consensus        73 ~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vl  124 (315)
T 3tl2_A           73 YADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSP-NAIIV  124 (315)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEE
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEE
Confidence            89999999999997  21            33456777778888764 55443

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=98.91  E-value=3.9e-10  Score=116.54  Aligned_cols=91  Identities=16%  Similarity=0.103  Sum_probs=72.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++|+|+||+++||||+|||++++.+++.+++++++.                                       
T Consensus       347 llLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~---------------------------------------  387 (440)
T 2np9_A          347 VILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG---------------------------------------  387 (440)
T ss_dssp             HHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---------------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---------------------------------------
Confidence            57899999999999999999999999999999998887643                                       


Q ss_pred             CcHHHHHHHHHHhhcCChH---HHHHHHHHHHHHHhcCHHHHHHHHHHhhcccC
Q 009395           81 THPIVCIDVVEAGVVSGPR---AGLQKEAEDFQKLLRSETCKSLVHIFFAQRGT  131 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~---~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~  131 (535)
                      .++..+|++++.+.. +.+   +.+..|...+..++.|+|+++++.+|++||++
T Consensus       388 ~Av~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~a  440 (440)
T 2np9_A          388 DAVLANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPPA  440 (440)
T ss_dssp             HHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC-----
T ss_pred             HHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCC
Confidence            155678888887754 443   45667778899999999999999999999863

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.91  E-value=1.6e-08  Score=101.62  Aligned_cols=168  Identities=14%  Similarity=0.082  Sum_probs=108.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCH-HHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQ-EKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~-~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.||+.+|..|+++|++|++|++++.  +...           +.|. +.. ..-...+..+..+++.+++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~-----------~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~   69 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVK-----------AKGIRIRSATLGDYTFRPAAVVRSAAELE   69 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHH-----------HHCEEEEETTTCCEEECCSCEESCGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHH-----------hCCcEEeecCCCcEEEeeeeeECCHHHcC
Confidence            5899999999999999999999999999999862  3222           1111 000 00000001233445666554


Q ss_pred             -CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc-HHHHHhhcCCCCcEEeec-cc-----CCCCC---C-C
Q 009395          226 -DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID-LNLIGERTYSKDRIVGAH-FF-----SPAHV---M-P  293 (535)
Q Consensus       226 -~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~~l~~~~~~~~r~ig~h-~~-----~P~~~---~-~  293 (535)
                       ++|+||.|||...  ..++++++.+.++++++|++...++. .+.+++.++.. ++++.- ++     .|-..   . .
T Consensus        70 ~~~DlVilavK~~~--~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~~  146 (320)
T 3i83_A           70 TKPDCTLLCIKVVE--GADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAYG  146 (320)
T ss_dssp             SCCSEEEECCCCCT--TCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEecCCCC--hHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCCC
Confidence             8999999998653  34788899999999998888888886 46677776543 454432 21     22211   1 1


Q ss_pred             EEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccc
Q 009395          294 LLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGF  331 (535)
Q Consensus       294 lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~  331 (535)
                      .+.+-..+..+.+..+.+.+++...|.......|..+.
T Consensus       147 ~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~  184 (320)
T 3i83_A          147 RLMLGNYPGGVSERVKTLAAAFEEAGIDGIATENITTA  184 (320)
T ss_dssp             EEEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHHHH
T ss_pred             EEEEecCCCCccHHHHHHHHHHHhCCCCceECHHHHHH
Confidence            22232323344577888899999988887777775443

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=98.90  E-value=9.2e-10  Score=107.18  Aligned_cols=83  Identities=11%  Similarity=0.081  Sum_probs=69.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||+++++++|.+++++++..+ |                                   
T Consensus       181 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  224 (263)
T 2j5g_A          181 FLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQP-T-----------------------------------  224 (263)
T ss_dssp             HHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            5789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~  130 (535)
                      .+...+|++++.....++++++..|.           ..+++++|++||.
T Consensus       225 ~a~~~~K~~l~~~~~~~l~~~l~~e~-----------~~eg~~af~~~~~  263 (263)
T 2j5g_A          225 LNLRYTRVALTQRLKRLVNEGIGYGL-----------ALEGITATDLRNT  263 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhhhhccHHHHHHHHH-----------HHhhHHHHHhccC
Confidence            25667889988877666666666654           4599999999874

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.90  E-value=5.5e-09  Score=104.60  Aligned_cols=127  Identities=21%  Similarity=0.295  Sum_probs=82.3

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ++.+||+|||+|.||.++|..++.+|+ +|+++|+++++++.....+.+.... .  +         ...++..++++++
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~-~--~---------~~~~v~~t~d~~a   72 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPV-D--G---------FDAKFTGANDYAA   72 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHH-H--T---------CCCCEEEESSGGG
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhh-c--C---------CCCEEEEeCCHHH
Confidence            446799999999999999999999999 9999999998865433333222110 0  0         0124556678899


Q ss_pred             ccCCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCceee--ecCCcCcHHHHHhhcCC-CCcEEeec
Q 009395          224 FKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTYS-KDRIVGAH  284 (535)
Q Consensus       224 ~~~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~~~-~~r~ig~h  284 (535)
                      +++||+||.+..  .            +..+.+++.+.+.++. ++++++  ||........+.+..+. +.|++|+.
T Consensus        73 ~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~  149 (324)
T 3gvi_A           73 IEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNPLDAMVWALQKFSGLPAHKVVGMA  149 (324)
T ss_dssp             GTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred             HCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeec
Confidence            999999999862  1            3345667777888887 555443  44332222222333333 36777763

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.90  E-value=3.7e-09  Score=105.62  Aligned_cols=101  Identities=19%  Similarity=0.277  Sum_probs=75.8

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      ++.+||+|||+|.||.++|..++.+|+  +|+++|++++.++.....+.+..    ...         ...++..+++++
T Consensus        19 ~~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~----~~~---------~~~~i~~t~d~~   85 (330)
T 3ldh_A           19 RSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGS----LFL---------HTAKIVSGKDYS   85 (330)
T ss_dssp             CCCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHG----GGS---------CCSEEEEESSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhh----hcc---------cCCeEEEcCCHH
Confidence            356899999999999999999999998  99999999988765443333321    000         123566678898


Q ss_pred             cccCCCEEEEec--------------cCChHHHHHHHHHHHhhcCCCceee
Q 009395          223 SFKDVDMVIEAI--------------IENVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       223 ~~~~aDlVI~av--------------pe~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      ++++||+||.+.              ..+..+++++.+++.++. ++++++
T Consensus        86 ~~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~il  135 (330)
T 3ldh_A           86 VSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKE  135 (330)
T ss_dssp             SCSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEE
T ss_pred             HhCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEE
Confidence            999999999874              345678888889999985 555443

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=98.89  E-value=1e-09  Score=109.27  Aligned_cols=95  Identities=16%  Similarity=0.060  Sum_probs=81.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++. + |.                                  
T Consensus       204 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~-p~----------------------------------  247 (305)
T 3m6n_A          204 IMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR-T-PH----------------------------------  247 (305)
T ss_dssp             HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT-C-HH----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh-C-hH----------------------------------
Confidence            57899999999999999999999999999999999999975 2 31                                  


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                       +...+|++++.....+++++++.|.+.|..++.|+|....+..++.+...+
T Consensus       248 -a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q~~  298 (305)
T 3m6n_A          248 -AWAAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSR  298 (305)
T ss_dssp             -HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-
T ss_pred             -HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHhh
Confidence             667899999999999999999999999999999999877666555444433

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.88  E-value=5.4e-09  Score=104.65  Aligned_cols=127  Identities=20%  Similarity=0.344  Sum_probs=81.8

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ++.+||+|||+|.||.++|..++.+|+ +|+++|+++++++.....+.+...            ......++..++++++
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~------------~~~~~~~v~~t~d~~a   70 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCP------------IEGVDFKVRGTNDYKD   70 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCCEEEESCGGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhh------------hcCCCcEEEEcCCHHH
Confidence            346799999999999999999999998 999999999876533322221110            0000124555677899


Q ss_pred             ccCCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCceee--ecCCcCcHHHHHhhcCC-CCcEEeec
Q 009395          224 FKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTYS-KDRIVGAH  284 (535)
Q Consensus       224 ~~~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~~~-~~r~ig~h  284 (535)
                      +++||+||.+..  .            +..+.+++.+.+.+++ |+++++  ||........+.+..+. +.|++|+.
T Consensus        71 ~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~~  147 (321)
T 3p7m_A           71 LENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMA  147 (321)
T ss_dssp             GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred             HCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCchHHHHHHHHHhcCCCHHHEEeec
Confidence            999999999862  1            3456677778888887 455443  33322222222333333 36777763

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.86  E-value=2.3e-08  Score=99.99  Aligned_cols=120  Identities=20%  Similarity=0.321  Sum_probs=78.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCcccc
Q 009395          148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~  224 (535)
                      +||+|||+|.||.++|..|+.+|  ++|+++|+++++++.....+.+...   ..+           ..+.. +++++++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~---~~~-----------~~~~~~~~d~~~~   67 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA---NLE-----------AHGNIVINDWAAL   67 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---GSS-----------SCCEEEESCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh---hcC-----------CCeEEEeCCHHHh
Confidence            68999999999999999999999  7999999999887654432221110   000           11222 3566789


Q ss_pred             cCCCEEEEeccCCh------------------HHHHHHHHHHHhhcCCCceee--ecCCcCcHHHHHhhc--CCCCcEEe
Q 009395          225 KDVDMVIEAIIENV------------------SLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERT--YSKDRIVG  282 (535)
Q Consensus       225 ~~aDlVI~avpe~~------------------~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~--~~~~r~ig  282 (535)
                      ++||+||+|++...                  .+++++++++.++.+ +++++  ||.... ++.+....  -.+.|++|
T Consensus        68 ~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~-~~~~~~~~~~~~~~rvig  145 (309)
T 1hyh_A           68 ADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDV-ITALFQHVTGFPAHKVIG  145 (309)
T ss_dssp             TTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHH-HHHHHHHHHCCCGGGEEE
T ss_pred             CCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHH-HHHHHHHhcCCCHHHEee
Confidence            99999999998643                  246788888888775 55443  333222 12222221  23567887


Q ss_pred             e
Q 009395          283 A  283 (535)
Q Consensus       283 ~  283 (535)
                      +
T Consensus       146 ~  146 (309)
T 1hyh_A          146 T  146 (309)
T ss_dssp             C
T ss_pred             c
Confidence            7

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.82  E-value=2.3e-08  Score=99.97  Aligned_cols=97  Identities=18%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.||.++|..|+.+  |++|+++|+++++++.....+.+...            ......++..++++++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~------------~~~~~~~i~~t~d~~~l~   68 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTA   68 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhh------------cccCCcEEEECCCHHHHC
Confidence            4899999999999999999986  78999999998877643211111100            000123466667887899


Q ss_pred             CCCEEEEeccCC--------------hHHHHHHHHHHHhhcCCCc
Q 009395          226 DVDMVIEAIIEN--------------VSLKQQIFADLEKYCPPHC  256 (535)
Q Consensus       226 ~aDlVI~avpe~--------------~~~k~~v~~~l~~~~~~~~  256 (535)
                      +||+||+|+|..              ..+.+++.+.+.++.++..
T Consensus        69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~  113 (310)
T 1guz_A           69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPI  113 (310)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence            999999999532              1455677778888864443

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.82  E-value=2.7e-09  Score=108.29  Aligned_cols=117  Identities=14%  Similarity=0.021  Sum_probs=82.1

Q ss_pred             ceEEEEeCChhhHHHHHHHH-hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      ++|+|||+|.||.++|..+. ..|++|++||++++..+...           +.|             +...++++ .++
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~  219 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK-----------ALG-------------AERVDSLEELAR  219 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHh-----------hcC-------------cEEeCCHHHHhc
Confidence            58999999999999999999 99999999999876543221           111             11223443 478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcCCC-CcEEeecccCC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSK-DRIVGAHFFSP  288 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~~-~r~ig~h~~~P  288 (535)
                      +||+|++++|...+.+.-+.+++.+.+++++++++.+++  .....+.+.+... ....|+++|.+
T Consensus       220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~  285 (348)
T 2w2k_A          220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEF  285 (348)
T ss_dssp             HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred             cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence            999999999987765544445666788999988754444  3445677776432 23367888863

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.80  E-value=4.2e-08  Score=98.43  Aligned_cols=123  Identities=24%  Similarity=0.378  Sum_probs=80.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      ++||+|||+|.||..+|..|+.+|+  +|+++|++++.++.....+.+.+    .   +..      ..++..+++.+++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~----~---~~~------~~~v~~~~~~~~~   73 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS----S---FYP------TVSIDGSDDPEIC   73 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG----G---GST------TCEEEEESCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhh----h---hcC------CeEEEeCCCHHHh
Confidence            4699999999999999999999999  99999999877652111111110    0   000      0234444467788


Q ss_pred             cCCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCceeeecCCcCcHH-HHHhh-cC-CCCcEEee
Q 009395          225 KDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGER-TY-SKDRIVGA  283 (535)
Q Consensus       225 ~~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~-~~-~~~r~ig~  283 (535)
                      ++||+||.++.  .            +..+++++++++.++ .+++++++.+-++... .+... .. .+.+++|.
T Consensus        74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~  148 (319)
T 1lld_A           74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGS  148 (319)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCCCHHHEeec
Confidence            99999999993  2            235667888888886 5777776555444432 23321 12 23577765

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=98.79  E-value=3.1e-09  Score=107.15  Aligned_cols=118  Identities=16%  Similarity=0.075  Sum_probs=81.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      -++|+|||+|.||..+|..+...|++|++||++++..+...           +.|             +... +++ .++
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~e~l~  209 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-----------EFQ-------------AEFV-STPELAA  209 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-----------TTT-------------CEEC-CHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-----------hcC-------------ceeC-CHHHHHh
Confidence            36899999999999999999999999999999876443221           111             1222 443 478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcCC-CCcEEeecccCCC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFFSPA  289 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~~P~  289 (535)
                      +||+||+++|...+.+.-+-+++.+.+++++++++.+++  .....+.+.+.. .....++++|.|.
T Consensus       210 ~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e  276 (330)
T 2gcg_A          210 QSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE  276 (330)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred             hCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence            999999999987654433335666778999988754444  344567666632 3345778887653

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=98.75  E-value=3.7e-09  Score=104.07  Aligned_cols=86  Identities=6%  Similarity=0.043  Sum_probs=65.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCC-----chHHHHH-HHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHH
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPN-----QLVSTAR-QWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQAR   74 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~-----~l~~~a~-~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (535)
                      |+|||++++|+||+++||||+|||++     ++++++. +++++++..+ |                             
T Consensus       177 llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~-~-----------------------------  226 (280)
T 1pjh_A          177 CLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLY-L-----------------------------  226 (280)
T ss_dssp             HHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCC-H-----------------------------
T ss_pred             HHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCC-H-----------------------------
Confidence            57899999999999999999999986     7888885 8999999853 2                             


Q ss_pred             HhCCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           75 KQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        75 ~~~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                            .+...+|++++....    ..++        ...++|+++++.+|.+||.+..+
T Consensus       227 ------~a~~~~K~~l~~~~~----~~l~--------~~~~~d~~e~~~af~~kr~~e~~  268 (280)
T 1pjh_A          227 ------PSCLGMKKLLKSNHI----DAFN--------KANSVEVNESLKYWVDGEPLKRF  268 (280)
T ss_dssp             ------HHHHHHHHHHHTTTH----HHHH--------HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             ------HHHHHHHHHHHHhHH----HHHH--------HhhhHHHHHHHHHHhCCccHHHH
Confidence                  155678888876542    2222        12578888888888888776333

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.74  E-value=4e-08  Score=100.05  Aligned_cols=105  Identities=18%  Similarity=0.182  Sum_probs=72.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc-ccccCccc-c
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL-TGVLDYES-F  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i-~~~~~~~~-~  224 (535)
                      ++||+|||+|.||..+|..|+++|++|++||++++.++...+..  .+  .+.....+      ...++ ..++++++ +
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~--~~--~~~~~~~~------~~~~~~~~~~~~~~~~   73 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG--AI--IAEGPGLA------GTAHPDLLTSDIGLAV   73 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT--SE--EEESSSCC------EEECCSEEESCHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcC--Ce--EEeccccc------cccccceecCCHHHHH
Confidence            46899999999999999999999999999999998876543210  00  00000000      00112 23445543 7


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      .++|+||.|+|....  .++++++.+.+++++++++..+
T Consensus        74 ~~~D~vi~~v~~~~~--~~~~~~l~~~l~~~~~vv~~~~  110 (359)
T 1bg6_A           74 KDADVILIVVPAIHH--ASIAANIASYISEGQLIILNPG  110 (359)
T ss_dssp             TTCSEEEECSCGGGH--HHHHHHHGGGCCTTCEEEESSC
T ss_pred             hcCCEEEEeCCchHH--HHHHHHHHHhCCCCCEEEEcCC
Confidence            899999999997643  6888999999999987766533

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=98.74  E-value=4.1e-09  Score=100.79  Aligned_cols=73  Identities=16%  Similarity=0.193  Sum_probs=65.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       159 l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  202 (232)
T 3ot6_A          159 SVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKIN-M-----------------------------------  202 (232)
T ss_dssp             HHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             HHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDF  109 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f  109 (535)
                      .+...+|++++.+...+++++++.|.+.|
T Consensus       203 ~a~~~~K~~l~~~~~~~l~~~l~~E~~~~  231 (232)
T 3ot6_A          203 NAHKKTKLKVRKGLLDTLDAAIEQDRQHM  231 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHhc
Confidence            26678999999998888999999998765

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.74  E-value=2e-08  Score=100.58  Aligned_cols=122  Identities=16%  Similarity=0.221  Sum_probs=78.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      +++||+|||+|.||.++|..++.+|.  +|+++|++++.++.....+.+.    ..  .+.      ..-++. ++++++
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~----~~--~~~------~~~~i~-~~~~~a   71 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG----KV--FAP------KPVDIW-HGDYDD   71 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH----TT--SSS------SCCEEE-ECCGGG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHH----hh--hcC------CCeEEE-cCcHHH
Confidence            45799999999999999999998886  8999999988554322222211    00  000      001222 345678


Q ss_pred             ccCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhc----CC-CCcEEee
Q 009395          224 FKDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YS-KDRIVGA  283 (535)
Q Consensus       224 ~~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~~-~~r~ig~  283 (535)
                      +++||+||++++              ++..+++++.+.+.++++ +++++..  +-|++.+...+    +. +.|++|+
T Consensus        72 l~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~~iv~--tNPv~~~~~~~~~~s~~p~~rviG~  147 (316)
T 1ldn_A           72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGF-QGLFLVA--TNPVDILTYATWKFSGLPHERVIGS  147 (316)
T ss_dssp             TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTC-CSEEEEC--SSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCC-CCEEEEe--CCchHHHHHHHHHHhCCCHHHEEec
Confidence            999999999953              334788899999999875 4433222  22444333322    22 4677776

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.73  E-value=5.9e-09  Score=104.92  Aligned_cols=111  Identities=15%  Similarity=0.084  Sum_probs=79.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||+|.||.++|..+...|++|++||++++..+                |             .....+++ .+++
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell~~  215 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELASN  215 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHHhc
Confidence            5899999999999999999999999999999865321                1             11233453 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--HHHHhhcCC-CCcEEeecccC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFS  287 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~  287 (535)
                      ||+|+.++|...+.+.-+-+++.+.+++++++++.+++..+  ..+.+.+.. ..+..++++|.
T Consensus       216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~  279 (333)
T 3ba1_A          216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE  279 (333)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred             CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence            99999999987654433324555677889988755554333  466666643 34667888875

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.72  E-value=2.3e-08  Score=103.72  Aligned_cols=108  Identities=15%  Similarity=0.152  Sum_probs=76.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHh-CCCcEEEEe---CCHHHHHHHHHHHHHHHHHHHHcCC------CCHHHHHhhhcccc-
Q 009395          148 KKVAILGGGLMGSGIATALIL-SNYPVILKE---VNEKFLEAGIGRVRANLQSRVKKGK------MTQEKFEKTISLLT-  216 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~-~G~~V~l~d---~~~~~~~~~~~~i~~~~~~~~~~g~------~~~~~~~~~~~~i~-  216 (535)
                      +||+|||+|.||..+|..|++ +|++|++||   ++++.++.+.+          +.|.      ..... .....++. 
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~----------~~g~~~~~~~~~~~~-~~~~~~~~~   71 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALG----------ADELTVIVNEKDGTQ-TEVKSRPKV   71 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHT----------TSCEEEEEECSSSCE-EEEEECCSE
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHh----------hccceeeeecCCCcc-ceeeccceE
Confidence            689999999999999999988 599999999   87777654321          1110      00000 00011233 


Q ss_pred             cccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH
Q 009395          217 GVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN  268 (535)
Q Consensus       217 ~~~~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  268 (535)
                      .+++++ .+.+||+||+|||...  ..++++++.++++++++|++++++..++
T Consensus        72 ~~~~~~~a~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~ivv~~~~~~G~~  122 (404)
T 3c7a_A           72 ITKDPEIAISGADVVILTVPAFA--HEGYFQAMAPYVQDSALIVGLPSQAGFE  122 (404)
T ss_dssp             EESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCEEEETTCCTTHH
T ss_pred             EeCCHHHHhCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcEEEEcCCCccHH
Confidence            455664 4789999999999754  5789999999999999998876655533

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.72  E-value=4.5e-09  Score=106.09  Aligned_cols=115  Identities=17%  Similarity=0.089  Sum_probs=79.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||+|.||.++|..+...|++|++||++++. +...           +.|             +.. .++ +.++
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~~~l~  203 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVER-----------ELN-------------AEF-KPLEDLLR  203 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HHC-------------CEE-CCHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHh-----------hcC-------------ccc-CCHHHHHh
Confidence            468999999999999999999999999999998765 3221           112             112 244 3478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH--HHHhhcCC-CCcEEeecccC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN--LIGERTYS-KDRIVGAHFFS  287 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~-~~r~ig~h~~~  287 (535)
                      +||+|++|+|...+.+.-+.+++.+.+++++++++.+.+..++  .+.+.+.. .-...|+++|.
T Consensus       204 ~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~  268 (334)
T 2dbq_A          204 ESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFE  268 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCS
T ss_pred             hCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCC
Confidence            9999999999877544333356667789999886544443333  56665532 33447788886

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.70  E-value=6.9e-08  Score=95.34  Aligned_cols=102  Identities=17%  Similarity=0.226  Sum_probs=69.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.||.++|..++.+|+  +|++||++++.++.....+.+....   .+         ...++..+++.++++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~---~~---------~~~~i~~t~d~~a~~   68 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG---ID---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHT---TT---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhh---cC---------CCCEEEEeCCHHHhC
Confidence            489999999999999999999998  9999999998876322222221110   00         012456566788899


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       226 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      +||+||.+..-              +..+.+++.+.+.++. ++++++..|
T Consensus        69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvs  118 (294)
T 1oju_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVT  118 (294)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECS
T ss_pred             CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeC
Confidence            99999998731              2244556666777775 555554333

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=98.70  E-value=9.1e-09  Score=103.75  Aligned_cols=113  Identities=21%  Similarity=0.154  Sum_probs=77.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||+|.||.++|..+...|++|++||++++. +.+.           +.|             +... +++ .+++
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~e~l~~  200 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK-----------ELK-------------ARYM-DIDELLEK  200 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH-----------HHT-------------EEEC-CHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-----------hcC-------------ceec-CHHHHHhh
Confidence            68999999999999999999999999999998765 2211           111             1122 443 4689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--HHHHhhcCC-CCcEEeecccC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERTYS-KDRIVGAHFFS  287 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~~-~~r~ig~h~~~  287 (535)
                      ||+|++|+|...+.+.-+-+++.+.++++ ++++.+.+..+  ..+.+.+.. .....|+++|.
T Consensus       201 aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~  263 (333)
T 2d0i_A          201 SDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE  263 (333)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred             CCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence            99999999987655443334556678888 77544433333  345566543 34568889887

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.67  E-value=8.3e-08  Score=100.68  Aligned_cols=77  Identities=19%  Similarity=0.288  Sum_probs=55.7

Q ss_pred             cceEEEEeCChh--hHHHHHHHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          147 VKKVAILGGGLM--GSGIATALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       147 ~~kV~vIG~G~m--G~~iA~~l~~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      .+||+|||+|.|  |.++|..++..    |.+|++||+++++++.........    .....        ...+++.++|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~----l~~~~--------~~~~I~~ttD   70 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKY----VEEVG--------ADLKFEKTMN   70 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHH----HHHTT--------CCCEEEEESC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHH----hccCC--------CCcEEEEECC
Confidence            358999999997  56667788754    889999999999887754332221    11111        1246777888


Q ss_pred             c-ccccCCCEEEEecc
Q 009395          221 Y-ESFKDVDMVIEAII  235 (535)
Q Consensus       221 ~-~~~~~aDlVI~avp  235 (535)
                      + +++++||+||++++
T Consensus        71 ~~eal~dAD~VIiaag   86 (480)
T 1obb_A           71 LDDVIIDADFVINTAM   86 (480)
T ss_dssp             HHHHHTTCSEEEECCC
T ss_pred             HHHHhCCCCEEEECCC
Confidence            7 67999999999995

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=98.66  E-value=2.2e-08  Score=100.90  Aligned_cols=94  Identities=14%  Similarity=0.152  Sum_probs=68.7

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||+++++++|.++|++|+..+ |                                   
T Consensus       218 llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~-~-----------------------------------  261 (333)
T 3njd_A          218 LLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMP-V-----------------------------------  261 (333)
T ss_dssp             HHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            5799999999999999999999999999999999999999963 2                                   


Q ss_pred             CcHHHHHHHHHHhhcC-ChHHHHH------------HHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVS-GPRAGLQ------------KEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~-~~~~~l~------------~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|++++.+... ++.....            .|.+.|...    ..++++.+|++||.+...
T Consensus       262 ~al~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~f~~~----~~~~g~~a~~ekR~~~f~  324 (333)
T 3njd_A          262 NQLIMAKLACNTALLNQGVATSQMVSTVFDGIARHTPEGHAFVAT----AREHGFREAVRRRDEPMG  324 (333)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTTSHHHHHHHHH----HHHHCHHHHHHHHHGGGT
T ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChHHHHHHHH----hhhHHHHHHHHhcCCCCC
Confidence            2556678888776543 3332211            233333333    235667888999988654

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=98.64  E-value=6.7e-09  Score=99.37  Aligned_cols=74  Identities=20%  Similarity=0.212  Sum_probs=65.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++.++|.++|++++..+ |                                   
T Consensus       159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  202 (233)
T 3r6h_A          159 AAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLN-Q-----------------------------------  202 (233)
T ss_dssp             HHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQ  110 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~  110 (535)
                      .+...+|++++.....+++++++.|...|.
T Consensus       203 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~f~  232 (233)
T 3r6h_A          203 QAHNATKLRARAEALKAIRAGIDGIEAEFG  232 (233)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTSHHHHC
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence            266678999999888889999999988774

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.62  E-value=2.5e-08  Score=106.85  Aligned_cols=148  Identities=8%  Similarity=0.063  Sum_probs=96.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||+|.||+++|..+...|++|++||++... +.+.           +.|.             ... ++ +.++
T Consensus       142 g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g~-------------~~~-~l~e~~~  195 (529)
T 1ygy_A          142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAA-----------QLGI-------------ELL-SLDDLLA  195 (529)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHH-----------HHTC-------------EEC-CHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcCc-------------EEc-CHHHHHh
Confidence            368999999999999999999999999999997642 2111           1121             112 34 3478


Q ss_pred             CCCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCcHH--HHHhhcCCC------CcEEeecccC--CCCCCCE
Q 009395          226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDLN--LIGERTYSK------DRIVGAHFFS--PAHVMPL  294 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~~--~l~~~~~~~------~r~ig~h~~~--P~~~~~l  294 (535)
                      +||+|+.|+|...+.. .++ +++.+.+++++++++.+.+-.++  .+.+.+...      ..|++.||..  |-...+-
T Consensus       196 ~aDvV~l~~P~~~~t~-~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~  274 (529)
T 1ygy_A          196 RADFISVHLPKTPETA-GLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQ  274 (529)
T ss_dssp             HCSEEEECCCCSTTTT-TCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTT
T ss_pred             cCCEEEECCCCchHHH-HHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCC
Confidence            8999999999765443 333 34667789999887665544333  455555321      2355556642  2233566


Q ss_pred             EEEEeCCC-CCHHHHHH-----HHHHHHhcCCc
Q 009395          295 LEIVRTNQ-TSPQVIVD-----LLDIGKKIKKT  321 (535)
Q Consensus       295 veiv~~~~-ts~e~~~~-----~~~l~~~lGk~  321 (535)
                      +.++|+.. ++++..+.     +.++...++..
T Consensus       275 vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~  307 (529)
T 1ygy_A          275 VVVTPHLGASTAEAQDRAGTDVAESVRLALAGE  307 (529)
T ss_dssp             EEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEccccCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            77888877 77777664     55565555543

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.61  E-value=8.5e-09  Score=101.54  Aligned_cols=124  Identities=13%  Similarity=-0.020  Sum_probs=83.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.||.++|..+...|++|+.||++++..+.                             ....++++ .+++
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~~  173 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFRQ  173 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHHH
T ss_pred             chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhhc
Confidence            68999999999999999999999999999998654210                             11233443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcC-CCCcEEeeccc-----CCCCCCCEEEEE
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY-SKDRIVGAHFF-----SPAHVMPLLEIV  298 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~-~~~r~ig~h~~-----~P~~~~~lveiv  298 (535)
                      ||+|+.++|...+...-+-++..+.++++++++..+++-  ....+.+.+. ......++-.|     .|....+-+.++
T Consensus       174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nvilT  253 (290)
T 3gvx_A          174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNAILS  253 (290)
T ss_dssp             CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSEEEC
T ss_pred             cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhhhcC
Confidence            999999999766654444466778899999887544443  3446666553 22233444333     333445556677


Q ss_pred             eC
Q 009395          299 RT  300 (535)
Q Consensus       299 ~~  300 (535)
                      |+
T Consensus       254 PH  255 (290)
T 3gvx_A          254 PH  255 (290)
T ss_dssp             CS
T ss_pred             cc
Confidence            76

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.61  E-value=1.7e-07  Score=93.41  Aligned_cols=99  Identities=17%  Similarity=0.258  Sum_probs=66.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.||.++|..++.+|+  +|+++|+++++++.....+.+..... ..           -.++..++++++++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~-~~-----------~~~v~~~~~~~a~~   68 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIH-GF-----------DTRVTGTNDYGPTE   68 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHH-TC-----------CCEEEEESSSGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccccc-CC-----------CcEEEECCCHHHhC
Confidence            589999999999999999999997  99999999987654332332211000 00           01344456788999


Q ss_pred             CCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          226 DVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       226 ~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      +||+||.+...              +..+.+++.+.+.++. |+++++
T Consensus        69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vi  115 (314)
T 3nep_X           69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTII  115 (314)
T ss_dssp             TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEE
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEE
Confidence            99999998732              2234555566677775 455443

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.60  E-value=1.1e-07  Score=95.24  Aligned_cols=101  Identities=21%  Similarity=0.330  Sum_probs=71.0

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      .+.+||+|||+|.||.++|..++.+|+  +|+++|+++++++....++.+..    ...         ....+..+++++
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~----~~~---------~~~~i~~~~d~~   83 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGS----LFL---------KTPKIVSSKDYS   83 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG----GGC---------SCCEEEECSSGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhh----hcc---------CCCeEEEcCCHH
Confidence            456799999999999999999999998  89999999887765443332211    000         012344567888


Q ss_pred             cccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          223 SFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       223 ~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      ++++||+||.+.  |.            +..+.+++.+.+.+++ |+++++
T Consensus        84 ~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~-p~a~vl  133 (331)
T 4aj2_A           84 VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS-PQCKLL  133 (331)
T ss_dssp             GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEE
T ss_pred             HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEE
Confidence            999999999886  21            2346667777888885 455443

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.60  E-value=2.4e-07  Score=92.43  Aligned_cols=117  Identities=17%  Similarity=0.104  Sum_probs=76.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +||+|||+|.||+.+|..|+ +|++|++|+++++.++...+           .|......-......+  +.+.+....+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~-----------~G~~~~~~~~~~~~~~--~~~~~~~~~~   68 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQS-----------EGIRLYKGGEEFRADC--SADTSINSDF   68 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHH-----------HCEEEEETTEEEEECC--EEESSCCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHh-----------CCceEecCCCeecccc--cccccccCCC
Confidence            58999999999999999999 99999999999987665432           1210000000000001  1112346789


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH-HHHhhcCCCCcEEee
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN-LIGERTYSKDRIVGA  283 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~-~l~~~~~~~~r~ig~  283 (535)
                      |+||.||+..  ...++++.+.+. ++++ |+|...++... .+.+.++. .++++.
T Consensus        69 D~vilavK~~--~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~~-~~vl~g  120 (307)
T 3ego_A           69 DLLVVTVKQH--QLQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHVG-HSIYVG  120 (307)
T ss_dssp             SEEEECCCGG--GHHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCCS-CEEEEE
T ss_pred             CEEEEEeCHH--HHHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCCC-CcEEEE
Confidence            9999999743  456777887764 6677 77888888875 45554443 355443

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.59  E-value=3.7e-08  Score=98.10  Aligned_cols=69  Identities=23%  Similarity=0.304  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHh-cCC
Q 009395          460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYF-DQG  529 (535)
Q Consensus       460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~-~~~  529 (535)
                      .++.||++.+++||+++++++|++ ++++||.++..|+|||+||+.++|.+|+|+.+++++.++..+ ++.
T Consensus       204 g~i~nr~l~~~~~Ea~~l~~~g~~-~~~~id~~~~~g~g~p~GP~~~~D~~Gld~~~~~~~~l~~~~~~~~  273 (302)
T 1f0y_A          204 GFIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENP  273 (302)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCG
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            589999999999999999999998 999999999999999999999999999999999999998877 543

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.58  E-value=2.2e-07  Score=93.04  Aligned_cols=100  Identities=23%  Similarity=0.290  Sum_probs=68.2

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc-cccCc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT-GVLDY  221 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~  221 (535)
                      ++.+||+|||+|.||.++|..++..|+  +|+++|+++++++....++++.. ....             ..+. .++++
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~-~~~~-------------~~v~i~~~~~   68 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGK-AFAP-------------QPVKTSYGTY   68 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTG-GGSS-------------SCCEEEEECG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcc-cccc-------------CCeEEEeCcH
Confidence            346799999999999999999999997  89999999988765443333221 0000             1111 24567


Q ss_pred             ccccCCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          222 ESFKDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       222 ~~~~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      +++++||+||.++..              +..+.+++.+.+.++++ +++++
T Consensus        69 ~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vl  119 (326)
T 3pqe_A           69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFL  119 (326)
T ss_dssp             GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEE
T ss_pred             HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEE
Confidence            889999999998731              12344566667777765 55444

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.56  E-value=4.3e-08  Score=96.62  Aligned_cols=61  Identities=20%  Similarity=0.361  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHH
Q 009395          460 KDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKN  521 (535)
Q Consensus       460 ~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~  521 (535)
                      .+++||++.++++||++++++|++ ++++||.++..|+|+|+||+.++|++|||+.++++++
T Consensus       190 g~i~nr~~~~~~~ea~~l~~~g~~-~~~~id~~~~~~~g~~~Gp~~~~D~~Gld~~~~~~~~  250 (283)
T 4e12_A          190 GYVLNSLLVPLLDAAAELLVDGIA-DPETIDKTWRIGTGAPKGPFEIFDIVGLTTAYNISSV  250 (283)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHT
T ss_pred             CEEehHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCcCHHHHHHhccHHHHHHHHhc
Confidence            479999999999999999999998 9999999999999999999999999999999998873

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.55  E-value=2.3e-08  Score=98.63  Aligned_cols=68  Identities=21%  Similarity=0.213  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCC---CcchhhhhcCcchHHHHHHHHHhHhcCCC
Q 009395          461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPP---YRFVTFIHRGFSKSSSCFKNLLCYFDQGR  530 (535)
Q Consensus       461 ~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~---~~~g~~~~~G~~~~~~~~~~~~~~~~~~~  530 (535)
                      +++||++.++++||+.++++|+  ++++||.++..|+|+|+   |||.++|++|+|+..++++.+++.+++++
T Consensus       174 fi~Nrll~~~~~EA~~l~~~Gv--~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~~~~~~~l~~~~~~~~  244 (293)
T 1zej_A          174 SLVNRFNAAVLSEASRMIEEGV--RAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGDEK  244 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCGG
T ss_pred             ccHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCc
Confidence            8999999999999999999988  89999999999999999   99999999999999999999998887653

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.54  E-value=1.9e-08  Score=102.70  Aligned_cols=110  Identities=20%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC--------cEEEEeCCHHHHHH-HHHHHHHHHHHHHHc-CCCCHHHHHhhhcccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY--------PVILKEVNEKFLEA-GIGRVRANLQSRVKK-GKMTQEKFEKTISLLT  216 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~--------~V~l~d~~~~~~~~-~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~i~  216 (535)
                      ..||+|||+|.||+++|..|+++|+        +|++|.++++.... ..+.|+    ...+. ..++..   ....++.
T Consensus        34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in----~~~~N~~YLpgv---~Lp~~i~  106 (391)
T 4fgw_A           34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIIN----TRHQNVKYLPGI---TLPDNLV  106 (391)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHT----TTCCBTTTBTTC---CCCSSEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHH----hcCcCcccCCCC---cCCCCcE
Confidence            4589999999999999999999875        49999998653110 111111    00000 011110   1124677


Q ss_pred             cccCcc-cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC
Q 009395          217 GVLDYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (535)
Q Consensus       217 ~~~~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  265 (535)
                      .++|++ .+++||+||.+||.  +..+.+++++.+++++++++++.+-++
T Consensus       107 ~t~dl~~al~~ad~ii~avPs--~~~r~~l~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          107 ANPDLIDSVKDVDIIVFNIPH--QFLPRICSQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             EESCHHHHHTTCSEEEECSCG--GGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred             EeCCHHHHHhcCCEEEEECCh--hhhHHHHHHhccccCCCceeEEecccc
Confidence            788884 58999999999995  477899999999999999888877665

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.54  E-value=2.9e-07  Score=96.56  Aligned_cols=77  Identities=21%  Similarity=0.191  Sum_probs=55.7

Q ss_pred             ceEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          148 KKVAILGGGLM-GSGIATALILS-----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       148 ~kV~vIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      +||+|||+|.+ |.++|..|+.+     +.+|++||+++++++... .+...+....  +         ...++..++|+
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~-~~~~~~l~~~--~---------~~~~I~~t~D~   96 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA-GACDVFIREK--A---------PDIEFAATTDP   96 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHH-HHHHHHHHHH--C---------TTSEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHH-HHHHHHhccC--C---------CCCEEEEECCH
Confidence            59999999998 66688788887     668999999999877643 3322221111  1         11356777787


Q ss_pred             -ccccCCCEEEEeccC
Q 009395          222 -ESFKDVDMVIEAIIE  236 (535)
Q Consensus       222 -~~~~~aDlVI~avpe  236 (535)
                       +++++||+||.++|.
T Consensus        97 ~eal~~AD~VViaag~  112 (472)
T 1u8x_X           97 EEAFTDVDFVMAHIRV  112 (472)
T ss_dssp             HHHHSSCSEEEECCCT
T ss_pred             HHHHcCCCEEEEcCCC
Confidence             679999999999975

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.53  E-value=2.8e-08  Score=98.54  Aligned_cols=160  Identities=14%  Similarity=0.070  Sum_probs=102.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-cC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-KD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~  226 (535)
                      +||+|||+|.||+.+|..|+++|++|++|+++++.++..           ...|..+        ..+. .++.+.+ .+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~-----------~~~g~~~--------~~~~-~~~~~~~~~~   62 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYY-----------TVPHAPA--------QDIV-VKGYEDVTNT   62 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE-----------SSTTSCC--------EEEE-EEEGGGCCSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE-----------ecCCeec--------ccee-cCchHhcCCC
Confidence            589999999999999999999999999999996543210           0111110        1111 2233444 78


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecc------cCCCCCC-CEEEEEe
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHF------FSPAHVM-PLLEIVR  299 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~------~~P~~~~-~lveiv~  299 (535)
                      +|+||.||+..  ...++++++.+.++++++|++...++...+.   ++ ..++++.-.      ..|.... ....+.-
T Consensus        63 ~D~vilavk~~--~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~-~~~v~~g~~~~~a~~~~pg~v~~~~~~~~~  136 (294)
T 3g17_A           63 FDVIIIAVKTH--QLDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IP-FKNVCQAVVYISGQKKGDVVTHFRDYQLRI  136 (294)
T ss_dssp             EEEEEECSCGG--GHHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CC-CSCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEEEeCCcc--CHHHHHHHHHHhhCCCCEEEEeccCcccHhh---CC-CCcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence            99999999754  4578889999999999988888888876554   33 234444321      1232110 0111111


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhh
Q 009395          300 TNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRM  336 (535)
Q Consensus       300 ~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri  336 (535)
                      +   +.+..+.+.+++...|.......|..+..+.-+
T Consensus       137 ~---~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl  170 (294)
T 3g17_A          137 Q---DNALTRQFRDLVQDSQIDIVLEANIQQAIWYKL  170 (294)
T ss_dssp             E---CSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHH
T ss_pred             C---ccHHHHHHHHHHHhCCCceEEChHHHHHHHHHH
Confidence            2   245677788888888877777777555444333

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.53  E-value=3.8e-08  Score=98.00  Aligned_cols=60  Identities=23%  Similarity=0.364  Sum_probs=55.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCC---CCcchhhhhcCcchHHHH
Q 009395          458 SEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFP---PYRFVTFIHRGFSKSSSC  518 (535)
Q Consensus       458 ~~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~---~~~~g~~~~~G~~~~~~~  518 (535)
                      ..-||+||++.++++||+++++||++ |++|||.+|..|+|+|   +|||.++|+.|+|....+
T Consensus       190 ~pGFi~NRl~~~~~~EA~~lv~eGva-s~edID~~~~~g~g~~~a~mGPf~~~Dl~G~~~~~~~  252 (319)
T 3ado_A          190 IDGFVLNRLQYAIISEAWRLVEEGIV-SPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLSYC  252 (319)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHTTHHHHHTTSCHHHHHHHTTTSHHHHH
T ss_pred             CCCEeHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCCcchhhhhhhcCccHHHHH
Confidence            34699999999999999999999999 9999999999999988   899999999999876554

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.53  E-value=2.1e-07  Score=93.28  Aligned_cols=103  Identities=12%  Similarity=-0.000  Sum_probs=71.6

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEV-NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~-~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      -++|+|||.|.||.++|..+...|++|++||+ +++.. .+.           +.|             +....++ +.+
T Consensus       146 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-----------~~g-------------~~~~~~l~ell  200 (320)
T 1gdh_A          146 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-----------SYQ-------------ATFHDSLDSLL  200 (320)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-----------HHT-------------CEECSSHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-----------hcC-------------cEEcCCHHHHH
Confidence            36899999999999999999999999999999 76542 111           112             1122234 346


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhc
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT  274 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~  274 (535)
                      ++||+|+.++|..++...-+-++..+.+++++++++.+++  +....+.+.+
T Consensus       201 ~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL  252 (320)
T 1gdh_A          201 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAAL  252 (320)
T ss_dssp             HHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             hhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHH
Confidence            8999999999976554322224566778999988766555  3444666655

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=98.51  E-value=3.2e-08  Score=95.98  Aligned_cols=83  Identities=17%  Similarity=0.128  Sum_probs=66.5

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||+++++++|.++|++++..+ |                                   
T Consensus       172 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  215 (257)
T 1szo_A          172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKP-L-----------------------------------  215 (257)
T ss_dssp             HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccc
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRG  130 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~  130 (535)
                      .+...+|++++.....+++++++.|.+.           +++.+|-.+.+
T Consensus       216 ~a~~~~K~~l~~~~~~~l~~~l~~~~~~-----------eg~~a~~~~~~  254 (257)
T 1szo_A          216 LARRYARKVLTRQLRRVMEADLSLGLAH-----------EALAAIDLGME  254 (257)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHHHHHHHHH-----------HHHHHHHHC--
T ss_pred             HHHHHHHHHHHhhhhccHHHHHHHHHHH-----------hhhhhhhcccc
Confidence            2566788888887776777777766533           66788876543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.51  E-value=4.1e-07  Score=89.57  Aligned_cols=97  Identities=16%  Similarity=0.247  Sum_probs=67.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.+|+++|..++.++.  ++.++|++++..+.-..++.+...   -.+         ....+..++++++++
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~---~~~---------~~~~i~~~~d~~~~~   68 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA---GID---------KYPKIVGGADYSLLK   68 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHG---GGT---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccc---cCC---------CCCeEecCCCHHHhC
Confidence            589999999999999999998886  899999998776543333322110   000         012345567889999


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCc
Q 009395          226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHC  256 (535)
Q Consensus       226 ~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~  256 (535)
                      +||+||.+.  |-            +..+.+++.+++.++.++..
T Consensus        69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~ai  113 (294)
T 2x0j_A           69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESK  113 (294)
T ss_dssp             TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCE
T ss_pred             CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence            999999876  21            44566677777887765544

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.47  E-value=2.1e-07  Score=96.77  Aligned_cols=73  Identities=19%  Similarity=0.249  Sum_probs=54.8

Q ss_pred             cceEEEEeCChh--hHHHHHHHHh----CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          147 VKKVAILGGGLM--GSGIATALIL----SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       147 ~~kV~vIG~G~m--G~~iA~~l~~----~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      .+||+|||+|.|  |.+|+..++.    .| +|++||+++++++.... +.+.         +..     ...+++.|+|
T Consensus         5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~-~~~~---------l~~-----~~~~I~~TtD   68 (450)
T 3fef_A            5 QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV-IGNH---------SGN-----GRWRYEAVST   68 (450)
T ss_dssp             CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH-HHTT---------STT-----SCEEEEEESS
T ss_pred             CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH-HHHH---------Hhc-----cCCeEEEECC
Confidence            369999999997  6899988886    57 99999999998776432 1111         110     2246788888


Q ss_pred             c-ccccCCCEEEEecc
Q 009395          221 Y-ESFKDVDMVIEAII  235 (535)
Q Consensus       221 ~-~~~~~aDlVI~avp  235 (535)
                      + +++++||+||++++
T Consensus        69 ~~eAl~dADfVI~air   84 (450)
T 3fef_A           69 LKKALSAADIVIISIL   84 (450)
T ss_dssp             HHHHHTTCSEEEECCC
T ss_pred             HHHHhcCCCEEEeccc
Confidence            8 46899999999995

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.44  E-value=1.1e-06  Score=87.89  Aligned_cols=121  Identities=16%  Similarity=0.259  Sum_probs=76.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      .+||+|||+|.+|.+++..++.+|+  +|+++|+++++++.....+.+.. ...  +.         .-+++. ++.+++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~~--~~---------~~~v~~-~~~~a~   72 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PYS--PT---------TVRVKA-GEYSDC   72 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GGS--SS---------CCEEEE-CCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hhc--CC---------CeEEEe-CCHHHh
Confidence            4699999999999999999998885  89999999887764332222211 000  00         002332 457889


Q ss_pred             cCCCEEEEecc--CCh------------HHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhc----CC-CCcEEee
Q 009395          225 KDVDMVIEAII--ENV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT----YS-KDRIVGA  283 (535)
Q Consensus       225 ~~aDlVI~avp--e~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~----~~-~~r~ig~  283 (535)
                      ++||+||.+++  .++            .+.+++.+.+.++. ++++++..  |-|+..+...+    +. +.|++|+
T Consensus        73 ~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           73 HDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVA--TNPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEC--SSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHHHHHHHHhCCCHHHEEec
Confidence            99999999983  222            45566667777775 55554432  34554333322    22 3567765

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.44  E-value=2.7e-07  Score=93.28  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=72.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||..+|..+...|++|+.||+++...+...           +.|             +....++ +.+++
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~~l~ell~~  220 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEK-----------ETG-------------AKFVEDLNEMLPK  220 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHH-----------HHC-------------CEECSCHHHHGGG
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHH-----------hCC-------------CeEcCCHHHHHhc
Confidence            6899999999999999999999999999999854332221           111             1223344 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|-.++...-+-++..+.++++++++..+.+  +.-..+.+.+.
T Consensus       221 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  271 (351)
T 3jtm_A          221 CDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE  271 (351)
T ss_dssp             CSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHH
Confidence            99999999976555443445667788999988644433  33446666653

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.44  E-value=1.3e-07  Score=94.25  Aligned_cols=102  Identities=20%  Similarity=0.131  Sum_probs=70.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||.|.||.++|..+...|++|++||++++. +.+.           +.|.             ... ++ +.++
T Consensus       142 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g~-------------~~~-~l~ell~  195 (307)
T 1wwk_A          142 GKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-----------EVNG-------------KFV-DLETLLK  195 (307)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HTTC-------------EEC-CHHHHHH
T ss_pred             CceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-----------hcCc-------------ccc-CHHHHHh
Confidence            368999999999999999999999999999998765 2211           1121             111 34 3467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhc
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT  274 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~  274 (535)
                      +||+|+.++|...+.+.-+-++..+.++++++++..+++-  ....+.+.+
T Consensus       196 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL  246 (307)
T 1wwk_A          196 ESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKAL  246 (307)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             hCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence            8999999999766543322245566789999887655543  233555555

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.43  E-value=1.3e-07  Score=94.54  Aligned_cols=102  Identities=14%  Similarity=0.142  Sum_probs=70.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||.|.||.++|..+...|++|++||++++... +.           +.|.             ... ++ +.++
T Consensus       142 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g~-------------~~~-~l~ell~  195 (313)
T 2ekl_A          142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AE-----------KINA-------------KAV-SLEELLK  195 (313)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HH-----------HTTC-------------EEC-CHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HH-----------hcCc-------------eec-CHHHHHh
Confidence            36899999999999999999999999999999876531 11           1121             111 33 3467


Q ss_pred             CCCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcC--cHHHHHhhcC
Q 009395          226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTI--DLNLIGERTY  275 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~  275 (535)
                      +||+|+.++|...+.. .++ ++..+.+++++++++.+++-  ....+.+.+.
T Consensus       196 ~aDvVvl~~P~~~~t~-~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~  247 (313)
T 2ekl_A          196 NSDVISLHVTVSKDAK-PIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK  247 (313)
T ss_dssp             HCSEEEECCCCCTTSC-CSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred             hCCEEEEeccCChHHH-HhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence            8999999999765432 223 44556788999887655543  3345666663

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.42  E-value=2.2e-07  Score=92.95  Aligned_cols=102  Identities=11%  Similarity=0.094  Sum_probs=72.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||+++|..+...|++|+.||++++..+..                          .......++ +.+++
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  191 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF--------------------------HETVAFTATADALAT  191 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC--------------------------SEEEEGGGCHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH--------------------------hhccccCCHHHHHhh
Confidence            689999999999999999999999999999986542110                          011112234 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|...+...-+-++....++++++++..+.+  +.-..+.+.+.
T Consensus       192 aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~  242 (324)
T 3evt_A          192 ANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALD  242 (324)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHH
Confidence            99999999977665544446677788999988654443  34456666663

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.41  E-value=6.1e-07  Score=90.80  Aligned_cols=102  Identities=14%  Similarity=0.093  Sum_probs=71.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.||.++|..+...|++|+.||++... +.+.           +.|             +....+++ .+++
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~  215 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERAR-----------ADG-------------FAVAESKDALFEQ  215 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHH-----------HTT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHH-----------hcC-------------ceEeCCHHHHHhh
Confidence            68999999999999999999999999999998643 1111           112             12233443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~  274 (535)
                      ||+|+.++|-..+...-+-++..+.++++++++..+.+-  .-..+.+.+
T Consensus       216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL  265 (352)
T 3gg9_A          216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTAL  265 (352)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHH
T ss_pred             CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHH
Confidence            999999999776654444456677889999887544432  334565555

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.41  E-value=8.9e-07  Score=88.50  Aligned_cols=98  Identities=19%  Similarity=0.230  Sum_probs=66.6

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCcc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYE  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~  222 (535)
                      ..+||+|||+|.||.++|..++..|+  +|+++|+++++++.....+.+..               ..+..+.. +.+++
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~---------------~~~~~~~i~~~~~~   72 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL---------------PFTSPKKIYSAEYS   72 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG---------------GGSCCCEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh---------------hhcCCcEEEECcHH
Confidence            45799999999999999999999998  89999999987765443332211               00112222 44678


Q ss_pred             cccCCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          223 SFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       223 ~~~~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      ++++||+||.+..  .            +..+.+++.+.+.++++ +++++
T Consensus        73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~il  122 (326)
T 3vku_A           73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFL  122 (326)
T ss_dssp             GGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEE
T ss_pred             HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEE
Confidence            8999999999862  1            23445666677777765 55444

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.40  E-value=8e-07  Score=89.45  Aligned_cols=96  Identities=23%  Similarity=0.307  Sum_probs=69.0

Q ss_pred             CcceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-
Q 009395          146 RVKKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-  221 (535)
Q Consensus       146 ~~~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-  221 (535)
                      +.+||+|||+ |.+|.++|..++..|.  +|+++|+++++++.....+.+.        ...       ..++..++++ 
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~--------~~~-------~~~i~~t~d~~   71 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC--------GFE-------GLNLTFTSDIK   71 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHH--------CCT-------TCCCEEESCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhC--------cCC-------CCceEEcCCHH
Confidence            3579999998 9999999999999995  8999999998776544333321        010       1245556666 


Q ss_pred             ccccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCc
Q 009395          222 ESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHC  256 (535)
Q Consensus       222 ~~~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~  256 (535)
                      +++++||+||.+.  |            .+..+.+++.+.+.+++++..
T Consensus        72 ~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~  120 (343)
T 3fi9_A           72 EALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK  120 (343)
T ss_dssp             HHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence            5699999999985  2            234566777778888876554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.39  E-value=2.4e-07  Score=93.16  Aligned_cols=101  Identities=15%  Similarity=0.024  Sum_probs=70.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||.++|+.+...|++|+.||++++.. .+.           +.|.             .. .++ +.+++
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~-----------~~g~-------------~~-~~l~ell~~  219 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSA-----------SFGV-------------QQ-LPLEEIWPL  219 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHH-----------HTTC-------------EE-CCHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhh-----------hcCc-------------ee-CCHHHHHhc
Confidence            689999999999999999999999999999986542 111           1121             11 133 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--HHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~  274 (535)
                      ||+|+.++|...+...-+-++..+.++++++++..+++-.+  ..+.+.+
T Consensus       220 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL  269 (335)
T 2g76_A          220 CDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRAL  269 (335)
T ss_dssp             CSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHH
Confidence            99999999987654332225667788999988755554333  3555555

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=98.39  E-value=7.9e-08  Score=94.43  Aligned_cols=72  Identities=22%  Similarity=0.260  Sum_probs=58.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++.|.++|++++..+ |                                   
T Consensus       179 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  222 (279)
T 3t3w_A          179 ILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMP-P-----------------------------------  222 (279)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             HHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcC-ChHHHHHHHHHH
Q 009395           81 THPIVCIDVVEAGVVS-GPRAGLQKEAED  108 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~-~~~~~l~~E~~~  108 (535)
                      .+...+|++++.+... +++++++.|.+.
T Consensus       223 ~a~~~~K~~l~~~~~~~~~~~~~~~~~~~  251 (279)
T 3t3w_A          223 FALRQAKRAVNQTLDVQGFYAAIQSVFDI  251 (279)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHhhH
Confidence            2566788888877643 566666555443

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.37  E-value=2.8e-07  Score=92.70  Aligned_cols=99  Identities=14%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||+|.||.++|..+...|++|+.||++++..                .+             .....++ +.++
T Consensus       171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~----------------~~-------------~~~~~sl~ell~  221 (340)
T 4dgs_A          171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG----------------VD-------------WIAHQSPVDLAR  221 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT----------------SC-------------CEECSSHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc----------------cC-------------ceecCCHHHHHh
Confidence            3689999999999999999999999999999986531                01             1112344 4478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH--HHHHhhc
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL--NLIGERT  274 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~  274 (535)
                      +||+|+.++|..++...-+-++..+.++++++++..+.+-.+  ..+.+.+
T Consensus       222 ~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL  272 (340)
T 4dgs_A          222 DSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEAL  272 (340)
T ss_dssp             TCSEEEECC----------CHHHHHHTTTTCEEEECSCC------------
T ss_pred             cCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHH
Confidence            999999999977666544446777889999988755444333  3455555

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.34  E-value=6.6e-07  Score=88.79  Aligned_cols=110  Identities=14%  Similarity=0.048  Sum_probs=74.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||.|.||.++|..+...|++|++||++++  +.               +.             ....++ +.++
T Consensus       124 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~~-------------~~~~~l~ell~  173 (303)
T 1qp8_A          124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------PW-------------RFTNSLEEALR  173 (303)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------SS-------------CCBSCSHHHHT
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------Cc-------------ccCCCHHHHHh
Confidence            36899999999999999999999999999999764  10               10             012234 4478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc--HHHHHhhcCC-CCcEEeeccc
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYS-KDRIVGAHFF  286 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~-~~r~ig~h~~  286 (535)
                      .||+|+.++|...+...-+-++..+.++++++++..+++-.  ...+.+.+.. .-.-.|+.-|
T Consensus       174 ~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~  237 (303)
T 1qp8_A          174 EARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW  237 (303)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             hCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence            99999999997765433222466778899998875544432  2346655522 2233455544

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.34  E-value=2e-06  Score=85.92  Aligned_cols=118  Identities=16%  Similarity=0.183  Sum_probs=74.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCcccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~  224 (535)
                      +||+|||+|.+|.+++..++..++  +++++|+++++++.....+.+..    ..           ...++. ..+++++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~~-----------~~~~~v~~~~~~a~   70 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ----AF-----------TAPKKIYSGEYSDC   70 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG----GG-----------SCCCEEEECCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH----Hh-----------cCCeEEEECCHHHh
Confidence            689999999999999999998887  89999999988764333222111    00           011212 2467889


Q ss_pred             cCCCEEEEeccC--Ch------------HHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHh----hcCC-CCcEEee
Q 009395          225 KDVDMVIEAIIE--NV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE----RTYS-KDRIVGA  283 (535)
Q Consensus       225 ~~aDlVI~avpe--~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~----~~~~-~~r~ig~  283 (535)
                      ++||+||.+.+.  ++            .+.+++.+.+.++. ++++++..  |-|+..+..    ..+. +.|++|+
T Consensus        71 ~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~--tNPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVA--ANPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEEC--SSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe--CCcHHHHHHHHHHHcCCCHHHEEec
Confidence            999999998742  22            45666667777775 45544432  344443332    2222 3567665

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.33  E-value=1.2e-06  Score=88.28  Aligned_cols=101  Identities=16%  Similarity=0.104  Sum_probs=71.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.||.++|..+...|++|+.||+++...+..             .|             .....+++ .+++
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-------------~g-------------~~~~~~l~ell~~  227 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE-------------EG-------------AIYHDTLDSLLGA  227 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-------------TT-------------CEECSSHHHHHHT
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh-------------cC-------------CeEeCCHHHHHhh
Confidence            689999999999999999999999999999985432211             01             11223454 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~  274 (535)
                      ||+|+.++|-.++...-+-++..+.++++++++..+.+  +.-..+.+.+
T Consensus       228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  277 (345)
T 4g2n_A          228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEAL  277 (345)
T ss_dssp             CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence            99999999977665443435667788999988744433  3345666665

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.33  E-value=2.2e-06  Score=85.87  Aligned_cols=119  Identities=18%  Similarity=0.217  Sum_probs=74.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  223 (535)
                      -+||+|||+|.+|.+++..++..++  +|+++|+++++++.....+.+..    .           ....++. ..++++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~-----------~~~~~~i~~~~~~a   73 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL----P-----------FTSPKKIYSAEYSD   73 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG----G-----------GSCCCEEEECCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH----H-----------hcCCeEEEECCHHH
Confidence            4699999999999999999998886  89999999988764332222111    0           0011222 246788


Q ss_pred             ccCCCEEEEeccC--Ch------------HHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHh----hcCC-CCcEEee
Q 009395          224 FKDVDMVIEAIIE--NV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE----RTYS-KDRIVGA  283 (535)
Q Consensus       224 ~~~aDlVI~avpe--~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~----~~~~-~~r~ig~  283 (535)
                      +++||+||.+.+.  ++            .+.+++.+.+.++. ++++++..  |-|+..+..    ..+. +.|++|+
T Consensus        74 ~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~--tNPv~~~t~~~~k~s~~p~~rviG~  149 (326)
T 2zqz_A           74 AKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSG-FNGIFLVA--ANPVDILTYATWKLSGFPKNRVVGS  149 (326)
T ss_dssp             GGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHT-CCSEEEEC--SSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe--CCcHHHHHHHHHHHcCCCHHHEEEc
Confidence            9999999998742  22            45566667777776 45544332  344443332    2222 3567665

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.31  E-value=7.8e-07  Score=91.09  Aligned_cols=103  Identities=10%  Similarity=0.043  Sum_probs=71.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||.++|+.+...|++|+.||++....+...           +.|             +....++ +.+++
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~-----------~~G-------------~~~~~~l~ell~~  247 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------ELN-------------LTWHATREDMYPV  247 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HHT-------------CEECSSHHHHGGG
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHh-----------hcC-------------ceecCCHHHHHhc
Confidence            5899999999999999999999999999999864332211           111             1111234 34789


Q ss_pred             CCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcC--cHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTI--DLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~  275 (535)
                      ||+|+.++|-.++.. .++ ++..+.++++++++..+.+-  .-..+.+.+.
T Consensus       248 aDvV~l~~Plt~~t~-~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  298 (393)
T 2nac_A          248 CDVVTLNCPLHPETE-HMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE  298 (393)
T ss_dssp             CSEEEECSCCCTTTT-TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEecCCchHHH-HHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHH
Confidence            999999999765543 334 56667789999887555443  2335666663

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.31  E-value=3e-07  Score=91.69  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=71.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||+++|..+...|++|+.||++++..+..                          .......++ +.+++
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~  193 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLNQ  193 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHHT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHhh
Confidence            689999999999999999999999999999986532110                          000011233 34689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~  274 (535)
                      ||+|+.++|-..+...-+-++..+.++++++++..+.+  +.-..+.+.+
T Consensus       194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL  243 (315)
T 3pp8_A          194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAAL  243 (315)
T ss_dssp             CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHH
Confidence            99999999977665433336677788999988644433  3345666665

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.30  E-value=2e-06  Score=89.88  Aligned_cols=78  Identities=21%  Similarity=0.208  Sum_probs=55.3

Q ss_pred             cceEEEEeCChh-hHHHHHHHHhC-----CCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 009395          147 VKKVAILGGGLM-GSGIATALILS-----NYPVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV  218 (535)
Q Consensus       147 ~~kV~vIG~G~m-G~~iA~~l~~~-----G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~  218 (535)
                      .+||+|||+|.+ |.+++..|+.+     +.+|++||+++  ++++... .+...+...  .+.         -.+++.+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~-~~~~~~~~~--~~~---------~~~i~~t   74 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVG-ALAKRMVEK--AGV---------PIEIHLT   74 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHH-HHHHHHHHH--TTC---------CCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHH-HHHHHHHhh--cCC---------CcEEEEe
Confidence            358999999999 88888888874     56899999999  8876643 222222111  110         1256667


Q ss_pred             cCc-ccccCCCEEEEeccC
Q 009395          219 LDY-ESFKDVDMVIEAIIE  236 (535)
Q Consensus       219 ~~~-~~~~~aDlVI~avpe  236 (535)
                      +|+ +++++||+||.+++.
T Consensus        75 ~D~~eal~gAD~VVitagv   93 (450)
T 1s6y_A           75 LDRRRALDGADFVTTQFRV   93 (450)
T ss_dssp             SCHHHHHTTCSEEEECCCT
T ss_pred             CCHHHHhCCCCEEEEcCCC
Confidence            787 779999999999974

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.30  E-value=2.4e-06  Score=86.62  Aligned_cols=102  Identities=10%  Similarity=0.046  Sum_probs=70.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||.++|..+...|++|+.||++... +.+.           ..|             +.. .++ +.++.
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~ell~~  230 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLE-----------ENG-------------VEP-ASLEDVLTK  230 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHH-----------HTT-------------CEE-CCHHHHHHS
T ss_pred             CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHh-----------hcC-------------eee-CCHHHHHhc
Confidence            68999999999999999999999999999998532 1111           112             111 234 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|-..+...-+-++..+.++++++++..+.+  +.-..+.+.+.
T Consensus       231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  281 (365)
T 4hy3_A          231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVS  281 (365)
T ss_dssp             CSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHH
T ss_pred             CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHH
Confidence            99999999987766544446777789999988744433  33456666663

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.29  E-value=1.8e-06  Score=86.32  Aligned_cols=119  Identities=20%  Similarity=0.312  Sum_probs=72.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhcccccccCccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      .+||+|||+|.+|.+++..++..|+  +|+++|+++++++.....+        ..+. +.      .--++.. +++++
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl--------~~~~~~~------~~~~i~~-~~~~a   71 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDI--------NHGLPFM------GQMSLYA-GDYSD   71 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHH--------TTSCCCT------TCEEEC---CGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH--------HHhHHhc------CCeEEEE-CCHHH
Confidence            4689999999999999999999998  9999999987765322111        1110 00      0012332 46788


Q ss_pred             ccCCCEEEEeccCCh--------------HHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHh----hcCC-CCcEEee
Q 009395          224 FKDVDMVIEAIIENV--------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE----RTYS-KDRIVGA  283 (535)
Q Consensus       224 ~~~aDlVI~avpe~~--------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~----~~~~-~~r~ig~  283 (535)
                      +++||+||.+++...              .+.+++.+.+.++. ++++++..  |.|+..+..    ..+. +.|++|+
T Consensus        72 ~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           72 VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             hCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEecc
Confidence            999999999985321              22466677788875 55554432  445543332    2222 4577776

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.29  E-value=1.1e-06  Score=90.34  Aligned_cols=100  Identities=18%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.||+++|..+...|++|+.||+++...                .+            ......+++ .+++
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----------------~~------------~~~~~~sl~ell~~  208 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----------------YG------------NVKPAASLDELLKT  208 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----------------BT------------TBEECSSHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----------------cc------------CcEecCCHHHHHhh
Confidence            689999999999999999999999999999874311                00            111223443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|...+.+.-+-++....++++++++..+.+  +....+.+.+.
T Consensus       209 aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~  259 (416)
T 3k5p_A          209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQ  259 (416)
T ss_dssp             CSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence            99999999987665433335666778999988754443  34456766663

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.29  E-value=7.2e-07  Score=88.91  Aligned_cols=97  Identities=15%  Similarity=0.132  Sum_probs=69.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||+|.||.++|+.+...|++|++||++++..+                              +. ..++ +.++
T Consensus       144 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~  192 (311)
T 2cuk_A          144 GLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLK  192 (311)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHh
Confidence            36899999999999999999999999999999865321                              01 1233 3467


Q ss_pred             CCCEEEEeccCChHHHHHHH-HHHHhhcCCCceeeecCCcCcH--HHHHhhcC
Q 009395          226 DVDMVIEAIIENVSLKQQIF-ADLEKYCPPHCILASNTSTIDL--NLIGERTY  275 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~-~~l~~~~~~~~ii~s~tS~~~~--~~l~~~~~  275 (535)
                      +||+|+.++|...+... ++ ++..+.++++++++..+++-.+  ..+.+.+.
T Consensus       193 ~aDvV~l~~p~~~~t~~-li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~  244 (311)
T 2cuk_A          193 EADVVSLHTPLTPETHR-LLNRERLFAMKRGAILLNTARGALVDTEALVEALR  244 (311)
T ss_dssp             HCSEEEECCCCCTTTTT-CBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred             hCCEEEEeCCCChHHHh-hcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence            89999999997654332 33 3455678999988755554322  35666665

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.28  E-value=2.6e-07  Score=92.35  Aligned_cols=101  Identities=14%  Similarity=0.117  Sum_probs=69.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.||+++|..+...|++|+.||++++..+.                 .         .......+++ .+++
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------~---------~~~~~~~~l~ell~~  194 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAG-----------------F---------DQVYQLPALNKMLAQ  194 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTT-----------------C---------SEEECGGGHHHHHHT
T ss_pred             ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhh-----------------h---------hcccccCCHHHHHhh
Confidence            68999999999999999999999999999998643210                 0         0111123443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~  274 (535)
                      ||+|+.++|...+...-+-++....++++++++..+.+-  .-..+.+.+
T Consensus       195 aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL  244 (324)
T 3hg7_A          195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTAL  244 (324)
T ss_dssp             CSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHH
Confidence            999999999765543333345566788999887544432  334666666

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.27  E-value=3.4e-06  Score=83.99  Aligned_cols=119  Identities=21%  Similarity=0.273  Sum_probs=74.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.+|.+++..++..+  .+|+++|+++++++.....+.+..    ...  .       --+++. +++++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~----~~~--~-------~~~v~~-~~~~a~~   66 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHAT----PFA--H-------PVWVWA-GSYGDLE   66 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTG----GGS--C-------CCEEEE-CCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhH----hhc--C-------CeEEEE-CCHHHhC
Confidence            48999999999999999999987  489999999887764332222110    000  0       012332 4678899


Q ss_pred             CCCEEEEecc--CC------------hHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHH----hhcCC-CCcEEee
Q 009395          226 DVDMVIEAII--EN------------VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG----ERTYS-KDRIVGA  283 (535)
Q Consensus       226 ~aDlVI~avp--e~------------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~----~~~~~-~~r~ig~  283 (535)
                      +||+||.+.+  .+            ..+.+++.+.+.++.+ +++++..  |-|+..+.    +..+. +.|++|+
T Consensus        67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~--tNPv~~~t~~~~k~s~~p~~rviG~  140 (310)
T 2xxj_A           67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAP-EAVLLVA--TNPVDVMTQVAYALSGLPPGRVVGS  140 (310)
T ss_dssp             TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEEC--SSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEe--cCchHHHHHHHHHHcCCCHHHEEec
Confidence            9999999873  22            3456667777888855 4544332  33443332    22222 3577775

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.26  E-value=1e-06  Score=89.08  Aligned_cols=102  Identities=16%  Similarity=0.047  Sum_probs=69.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||..+|..+...|++|++||++.+... ..           ..|             +....++ +.++.
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g-------------~~~~~~l~ell~~  223 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ER-----------ALG-------------LQRVSTLQDLLFH  223 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HH-----------HHT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-Hh-----------hcC-------------CeecCCHHHHHhc
Confidence            5899999999999999999999999999998754311 00           111             1112234 34688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~  274 (535)
                      ||+|+.++|...+...-+-++..+.++++++++..+++-  ....+.+.+
T Consensus       224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  273 (347)
T 1mx3_A          224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQAL  273 (347)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHH
Confidence            999999999765543322255666789999887555443  334566655

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.25  E-value=1.1e-05  Score=70.20  Aligned_cols=105  Identities=13%  Similarity=0.120  Sum_probs=65.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc--cc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--SF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~  224 (535)
                      +++|.|+|+|.+|..+|..|.+.|++|+++|++++.++.+.+.   .  ..+-.|-.+..            ..++  .+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~---~--~~~~~gd~~~~------------~~l~~~~~   68 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE---G--FDAVIADPTDE------------SFYRSLDL   68 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT---T--CEEEECCTTCH------------HHHHHSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC---C--CcEEECCCCCH------------HHHHhCCc
Confidence            5689999999999999999999999999999999987654311   0  00000111100            0011  25


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHH
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI  270 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  270 (535)
                      .++|+||.++++ .+....+...+.+.. ...+++...+....+.+
T Consensus        69 ~~~d~vi~~~~~-~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l  112 (141)
T 3llv_A           69 EGVSAVLITGSD-DEFNLKILKALRSVS-DVYAIVRVSSPKKKEEF  112 (141)
T ss_dssp             TTCSEEEECCSC-HHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHH
T ss_pred             ccCCEEEEecCC-HHHHHHHHHHHHHhC-CceEEEEEcChhHHHHH
Confidence            689999999984 333334444444444 55566655554444444

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.24  E-value=3.2e-07  Score=92.19  Aligned_cols=103  Identities=20%  Similarity=0.206  Sum_probs=72.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||.|.||+++|+.+...|++|+.||+++...+...           ..|             +... ++ +.++
T Consensus       145 g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~ell~  199 (330)
T 4e5n_A          145 NATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQ-----------RLG-------------LRQV-ACSELFA  199 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHH-----------HHT-------------EEEC-CHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHH-----------hcC-------------ceeC-CHHHHHh
Confidence            36899999999999999999999999999999863322211           111             1112 34 3478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhc
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT  274 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~  274 (535)
                      +||+|+.++|..++...-+-++..+.++++++++..+.+  +....+.+.+
T Consensus       200 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL  250 (330)
T 4e5n_A          200 SSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAAL  250 (330)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             hCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence            899999999976665444445777889999988755444  3344666655

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.23  E-value=7.7e-07  Score=91.72  Aligned_cols=100  Identities=21%  Similarity=0.224  Sum_probs=70.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||+.+|..+...|++|+.||+++...                .+            ......++ +.+++
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~~------------~~~~~~~l~ell~~  197 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----------------LG------------NATQVQHLSDLLNM  197 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----------------CT------------TCEECSCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----------------cC------------CceecCCHHHHHhc
Confidence            689999999999999999999999999999965320                01            11122344 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~  275 (535)
                      ||+|+.++|...+.+.-+-++..+.++++++++..+.+-  ....+.+.+.
T Consensus       198 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~  248 (404)
T 1sc6_A          198 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA  248 (404)
T ss_dssp             CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             CCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHH
Confidence            999999999876654433355667789999887444432  3345666663

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.19  E-value=1.8e-05  Score=68.38  Aligned_cols=93  Identities=16%  Similarity=0.189  Sum_probs=61.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c--
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--  221 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--  221 (535)
                      ++|+|+|+|.||..++..|.+.|++|+++|++++.++...+.          .+.          ..+... ++   +  
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----------~~~----------~~~~~d~~~~~~l~~   64 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----------IDA----------LVINGDCTKIKTLED   64 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------CSS----------EEEESCTTSHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh----------cCc----------EEEEcCCCCHHHHHH
Confidence            589999999999999999999999999999999876543210          011          000000 01   1  


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ..+.++|+||.|+|.+. . ...+..+.+.++++.+++...
T Consensus        65 ~~~~~~d~vi~~~~~~~-~-~~~~~~~~~~~~~~~ii~~~~  103 (140)
T 1lss_A           65 AGIEDADMYIAVTGKEE-V-NLMSSLLAKSYGINKTIARIS  103 (140)
T ss_dssp             TTTTTCSEEEECCSCHH-H-HHHHHHHHHHTTCCCEEEECS
T ss_pred             cCcccCCEEEEeeCCch-H-HHHHHHHHHHcCCCEEEEEec
Confidence            12578999999998642 2 233444555566666665433

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.14  E-value=3.1e-06  Score=84.48  Aligned_cols=89  Identities=12%  Similarity=0.141  Sum_probs=63.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++|+|||+|.||..++..++.. |+ +|++||+++++.+...+.          .+.           .+...+++ +.
T Consensus       135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~----------~~~-----------~~~~~~~~~e~  193 (312)
T 2i99_A          135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADT----------VQG-----------EVRVCSSVQEA  193 (312)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHH----------SSS-----------CCEECSSHHHH
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH----------hhC-----------CeEEeCCHHHH
Confidence            35899999999999999999876 87 899999999987654321          010           12333455 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      +++||+||.|+|...    .++..  +.++++++|++.+
T Consensus       194 v~~aDiVi~atp~~~----~v~~~--~~l~~g~~vi~~g  226 (312)
T 2i99_A          194 VAGADVIITVTLATE----PILFG--EWVKPGAHINAVG  226 (312)
T ss_dssp             HTTCSEEEECCCCSS----CCBCG--GGSCTTCEEEECC
T ss_pred             HhcCCEEEEEeCCCC----cccCH--HHcCCCcEEEeCC
Confidence            789999999998532    33322  4678888776643

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.13  E-value=1e-06  Score=89.69  Aligned_cols=103  Identities=17%  Similarity=0.128  Sum_probs=71.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      ++|+|||.|.||..+|..+...|++ |++||+++...+...           +.|             +....+++ .++
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~l~ell~  220 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEE-----------KVG-------------ARRVENIEELVA  220 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHH-----------HTT-------------EEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHH-----------hcC-------------cEecCCHHHHHh
Confidence            6899999999999999999999998 999999864433211           111             11222443 468


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhc
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT  274 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~  274 (535)
                      +||+|+.++|...+...-+-++..+.++++++++..+.+  +.-..+.+.+
T Consensus       221 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL  271 (364)
T 2j6i_A          221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAAL  271 (364)
T ss_dssp             TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHH
Confidence            999999999976654333334566778999988755544  2334566665

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.12  E-value=1e-06  Score=88.63  Aligned_cols=99  Identities=20%  Similarity=0.130  Sum_probs=70.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||+++|..+...|++|+.||++++..   .           +.+             .... ++ +.+++
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~-----------~~~-------------~~~~-~l~ell~~  200 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---F-----------EPF-------------LTYT-DFDTVLKE  200 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---G-----------TTT-------------CEEC-CHHHHHHH
T ss_pred             CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---h-----------hcc-------------cccc-CHHHHHhc
Confidence            689999999999999999999999999999986531   0           001             1112 44 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~  274 (535)
                      ||+|+.++|-..+...-+-++..+.++++++++..+.+  +....+.+.+
T Consensus       201 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL  250 (343)
T 2yq5_A          201 ADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKAL  250 (343)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHH
Confidence            99999999976655444445667778999988754443  3344666655

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.09  E-value=1.7e-06  Score=87.06  Aligned_cols=101  Identities=11%  Similarity=0.038  Sum_probs=70.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||.|.||.++|+.+...|++|++||++++..  .. .           .             +....++ +.++
T Consensus       146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~-~-----------~-------------~~~~~~l~ell~  198 (333)
T 1j4a_A          146 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LE-K-----------K-------------GYYVDSLDDLYK  198 (333)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HH-H-----------T-------------TCBCSCHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HH-h-----------h-------------CeecCCHHHHHh
Confidence            3689999999999999999999999999999987643  10 0           0             1112234 3467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhc
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERT  274 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~  274 (535)
                      +||+|+.++|...+...-+-++..+.+++++++++.+++  +....+.+.+
T Consensus       199 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL  249 (333)
T 1j4a_A          199 QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGL  249 (333)
T ss_dssp             HCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred             hCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHH
Confidence            899999999977654332224555678899988755544  3345666665

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.03  E-value=1.3e-06  Score=88.67  Aligned_cols=110  Identities=15%  Similarity=0.094  Sum_probs=72.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||+++|..+...|++|++||++.+...               .+             . ...++ +.+++
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~---------------~~-------------~-~~~sl~ell~~  170 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG---------------DE-------------G-DFRTLDELVQE  170 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT---------------CC-------------S-CBCCHHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc---------------cC-------------c-ccCCHHHHHhh
Confidence            5899999999999999999999999999997543210               00             1 12234 34689


Q ss_pred             CCEEEEeccCChH----HHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcCC-CCcEEeeccc
Q 009395          227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYS-KDRIVGAHFF  286 (535)
Q Consensus       227 aDlVI~avpe~~~----~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~~-~~r~ig~h~~  286 (535)
                      ||+|+.++|-..+    ...-+-++....++++++++..+.+  +.-..+.+.+.. .....++--|
T Consensus       171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~  237 (381)
T 3oet_A          171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVW  237 (381)
T ss_dssp             CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCC
T ss_pred             CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeecc
Confidence            9999999986654    3333334566678999988644433  334566666632 2333444333

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.02  E-value=3.9e-06  Score=73.61  Aligned_cols=69  Identities=22%  Similarity=0.279  Sum_probs=51.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||+|.||..++..|...|++|+++|+++++.+...+.+          +           ..+...+++ +.+.+
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~----------~-----------~~~~~~~~~~~~~~~   80 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY----------E-----------YEYVLINDIDSLIKN   80 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH----------T-----------CEEEECSCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh----------C-----------CceEeecCHHHHhcC
Confidence            5899999999999999999999999999999999876543211          1           011122333 34688


Q ss_pred             CCEEEEeccCC
Q 009395          227 VDMVIEAIIEN  237 (535)
Q Consensus       227 aDlVI~avpe~  237 (535)
                      +|+||.|+|..
T Consensus        81 ~Divi~at~~~   91 (144)
T 3oj0_A           81 NDVIITATSSK   91 (144)
T ss_dssp             CSEEEECSCCS
T ss_pred             CCEEEEeCCCC
Confidence            99999999864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.02  E-value=7.9e-06  Score=79.96  Aligned_cols=91  Identities=15%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||+|.||.+++..|.+.|++|+++|+++++.+...+.          .|             +...+++ +.+++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~  186 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQK----------FP-------------LEVVNSPEEVIDK  186 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTT----------SC-------------EEECSCGGGTGGG
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH----------cC-------------CeeehhHHhhhcC
Confidence            589999999999999999999999999999998876543210          01             1222234 45789


Q ss_pred             CCEEEEeccCChHHH-HHHHHHHHhhcCCCceeeecCC
Q 009395          227 VDMVIEAIIENVSLK-QQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       227 aDlVI~avpe~~~~k-~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +|+||.|+|....-. ...+.  .+.+++++++++.++
T Consensus       187 aDiVi~atp~~~~~~~~~~i~--~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          187 VQVIVNTTSVGLKDEDPEIFN--YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             CSEEEECSSTTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred             CCEEEEeCCCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence            999999998653100 00111  245678888776655

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=97.96  E-value=2.2e-06  Score=87.35  Aligned_cols=99  Identities=10%  Similarity=0.103  Sum_probs=67.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||+++|..+...|++|++||++.+..               ..|.             . ..++ +.+++
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g~-------------~-~~~l~ell~~  167 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPDG-------------E-FVSLERLLAE  167 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STTS-------------C-CCCHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccCc-------------c-cCCHHHHHHh
Confidence            589999999999999999999999999999765421               0110             1 1234 34679


Q ss_pred             CCEEEEeccCChH----HHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcC
Q 009395          227 VDMVIEAIIENVS----LKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~----~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~  275 (535)
                      ||+|+.++|...+    ...-+-++..+.++++++++..+.+-  .-..+.+.+.
T Consensus       168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~  222 (380)
T 2o4c_A          168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLE  222 (380)
T ss_dssp             CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            9999999987654    32222245667789999886444332  3345666653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.95  E-value=5.7e-05  Score=65.75  Aligned_cols=92  Identities=18%  Similarity=0.259  Sum_probs=60.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---cc-
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---YE-  222 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~~-  222 (535)
                      .+|.|+|+|.+|..+|..|...|++|+++|++++.++.+.+           .|.          ..+... ++   ++ 
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-----------~g~----------~~i~gd~~~~~~l~~   66 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE-----------RGV----------RAVLGNAANEEIMQL   66 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-----------TTC----------EEEESCTTSHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-----------cCC----------CEEECCCCCHHHHHh
Confidence            57999999999999999999999999999999998875531           121          001000 11   11 


Q ss_pred             -cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeec
Q 009395          223 -SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (535)
Q Consensus       223 -~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~  261 (535)
                       .+.++|+||.+++++.... .+...+....+...|++-.
T Consensus        67 a~i~~ad~vi~~~~~~~~n~-~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           67 AHLECAKWLILTIPNGYEAG-EIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             TTGGGCSEEEECCSCHHHHH-HHHHHHHHHCSSSEEEEEE
T ss_pred             cCcccCCEEEEECCChHHHH-HHHHHHHHHCCCCeEEEEE
Confidence             2578999999999765432 2333344433433455433

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.94  E-value=5e-05  Score=69.18  Aligned_cols=39  Identities=26%  Similarity=0.280  Sum_probs=35.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|+|+|.||..+|..|.+. |++|+++|+++++++.+
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~   79 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH   79 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence            4799999999999999999999 99999999999887654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=97.91  E-value=3.4e-06  Score=84.80  Aligned_cols=101  Identities=15%  Similarity=0.070  Sum_probs=70.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||.|.||..+|+.+...|++|++||++++..  .            +.             ..... ++ +.++
T Consensus       145 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~~-------------~~~~~-~l~ell~  196 (333)
T 1dxy_A          145 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D------------HP-------------DFDYV-SLEDLFK  196 (333)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C------------CT-------------TCEEC-CHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h------------Hh-------------ccccC-CHHHHHh
Confidence            3689999999999999999999999999999976431  0            00             01111 34 3468


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      +||+|+.++|...+...-+-++..+.++++++++..+++  +....+.+.+.
T Consensus       197 ~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~  248 (333)
T 1dxy_A          197 QSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK  248 (333)
T ss_dssp             HCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             cCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            999999999987665432324566778999988654443  23456666664

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.90  E-value=8.9e-05  Score=73.45  Aligned_cols=119  Identities=14%  Similarity=0.256  Sum_probs=72.3

Q ss_pred             ceEEEEe-CChhhHHHHHHHHhCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          148 KKVAILG-GGLMGSGIATALILSNY--PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       148 ~kV~vIG-~G~mG~~iA~~l~~~G~--~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +||+|+| +|.+|.+++..|+..|+  +++++|+  ++++++.....+.+...    .+.         --+++. ++.+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~----~~~---------~~~v~~-~~~~   66 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA----YDS---------NTRVRQ-GGYE   66 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT----TTC---------CCEEEE-CCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHh----hCC---------CcEEEe-CCHH
Confidence            4899999 99999999999998886  7999999  87765432222221110    000         012222 3567


Q ss_pred             cccCCCEEEEecc--CCh------------HHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHh----hcCC-CCcEEee
Q 009395          223 SFKDVDMVIEAII--ENV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE----RTYS-KDRIVGA  283 (535)
Q Consensus       223 ~~~~aDlVI~avp--e~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~----~~~~-~~r~ig~  283 (535)
                      ++++||+||.+..  ..+            ...+++.+.+.++.+ +.++..  +|-|+..+..    ..+. +.|++|+
T Consensus        67 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~~~viv--~SNPv~~~~~~~~~~~~~p~~rviG~  143 (303)
T 1o6z_A           67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLT--TSNPVDLLNRHLYEAGDRSREQVIGF  143 (303)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEE--CCSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred             HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEE--eCChHHHHHHHHHHHcCCCHHHeeec
Confidence            8999999999873  222            355666667777654 454432  2344443332    2222 4578776

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.88  E-value=4.9e-05  Score=67.32  Aligned_cols=39  Identities=31%  Similarity=0.337  Sum_probs=35.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA  185 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~  185 (535)
                      -++|.|+|+|.+|..++..|...|++|+++|++++.++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~   57 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR   57 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            368999999999999999999999999999999887643

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.88  E-value=4.5e-05  Score=66.32  Aligned_cols=89  Identities=16%  Similarity=0.207  Sum_probs=58.9

Q ss_pred             CCcceEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          145 RRVKKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       145 ~~~~kV~vIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      ...++|+|||+    |.||..++..+.+.|++|+.+|++.+.+                .             .+....+
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i----------------~-------------G~~~~~s   62 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI----------------E-------------GLKCYRS   62 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE----------------T-------------TEECBSS
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE----------------C-------------CeeecCC
Confidence            34578999999    9999999999999999866666543211                1             1223344


Q ss_pred             cccc-cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc
Q 009395          221 YESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (535)
Q Consensus       221 ~~~~-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  266 (535)
                      ++++ ..+|++|.++|.  +...+++.++.+ ...+.++. .+++..
T Consensus        63 ~~el~~~vDlvii~vp~--~~v~~v~~~~~~-~g~~~i~~-~~~~~~  105 (138)
T 1y81_A           63 VRELPKDVDVIVFVVPP--KVGLQVAKEAVE-AGFKKLWF-QPGAES  105 (138)
T ss_dssp             GGGSCTTCCEEEECSCH--HHHHHHHHHHHH-TTCCEEEE-CTTSCC
T ss_pred             HHHhCCCCCEEEEEeCH--HHHHHHHHHHHH-cCCCEEEE-cCccHH
Confidence            5443 579999999993  455677776655 34455554 455543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.86  E-value=4.2e-05  Score=63.85  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=36.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAG  186 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~  186 (535)
                      .++|+|+|+|.||..++..|.+.| ++|+++|+++++++..
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~   45 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL   45 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence            578999999999999999999999 9999999999887643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.85  E-value=4.9e-05  Score=65.83  Aligned_cols=99  Identities=21%  Similarity=0.172  Sum_probs=59.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc--cc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--SF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~  224 (535)
                      +++|.|+|+|.+|..++..|...|++|+++|++++.++.+.           +.+. .     .......-...++  .+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~-----------~~~~-~-----~~~~d~~~~~~l~~~~~   68 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-----------SYAT-H-----AVIANATEENELLSLGI   68 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT-----------TTCS-E-----EEECCTTCHHHHHTTTG
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HhCC-E-----EEEeCCCCHHHHHhcCC
Confidence            46799999999999999999999999999999988765321           1110 0     0000000000111  25


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      .++|+||.|++.+......+...+ ....+..+++..++
T Consensus        69 ~~~d~vi~~~~~~~~~~~~~~~~~-~~~~~~~ii~~~~~  106 (144)
T 2hmt_A           69 RNFEYVIVAIGANIQASTLTTLLL-KELDIPNIWVKAQN  106 (144)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHH-HHTTCSEEEEECCS
T ss_pred             CCCCEEEECCCCchHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence            789999999987643322333333 33445555554333

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.82  E-value=4.8e-05  Score=73.76  Aligned_cols=89  Identities=15%  Similarity=0.116  Sum_probs=60.8

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD  228 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  228 (535)
                      +|+|||+|.||.+++..|...|++|+++|+++++.+...+.          .|.             . .+++++++++|
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~----------~~~-------------~-~~~~~~~~~~D  173 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEE----------FGL-------------R-AVPLEKAREAR  173 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH----------HTC-------------E-ECCGGGGGGCS
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------hcc-------------c-hhhHhhccCCC
Confidence            79999999999999999999999999999999876544321          010             1 12332237899


Q ss_pred             EEEEeccCChH--HHHHHHHHHHhhcCCCceeeecCCc
Q 009395          229 MVIEAIIENVS--LKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       229 lVI~avpe~~~--~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      +||.|+|....  +. ..+.  .+.++++.++++.+.+
T Consensus       174 ivi~~tp~~~~~~~~-~~l~--~~~l~~g~~viD~~~~  208 (263)
T 2d5c_A          174 LLVNATRVGLEDPSA-SPLP--AELFPEEGAAVDLVYR  208 (263)
T ss_dssp             EEEECSSTTTTCTTC-CSSC--GGGSCSSSEEEESCCS
T ss_pred             EEEEccCCCCCCCCC-CCCC--HHHcCCCCEEEEeecC
Confidence            99999986631  10 1111  3456778877665443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.80  E-value=3.1e-05  Score=76.71  Aligned_cols=88  Identities=20%  Similarity=0.221  Sum_probs=59.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||+|.||..+|+.+...|.+|++||+++++.+.+.           +.|.          ..+. ..++ +.+++
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  215 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT-----------EMGL----------VPFH-TDELKEHVKD  215 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTC----------EEEE-GGGHHHHSTT
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HCCC----------eEEc-hhhHHHHhhC
Confidence            5899999999999999999999999999999987654321           1121          0001 1233 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ||+||.++|...--     ++..+.++++.++++.+
T Consensus       216 aDvVi~~~p~~~i~-----~~~~~~mk~g~~lin~a  246 (300)
T 2rir_A          216 IDICINTIPSMILN-----QTVLSSMTPKTLILDLA  246 (300)
T ss_dssp             CSEEEECCSSCCBC-----HHHHTTSCTTCEEEECS
T ss_pred             CCEEEECCChhhhC-----HHHHHhCCCCCEEEEEe
Confidence            99999999864211     12334567777665433

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=97.80  E-value=3.5e-06  Score=84.68  Aligned_cols=101  Identities=18%  Similarity=0.064  Sum_probs=69.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||.|.||..+|+.+...|++|++||++++..  .            +.             .+.. .++ +.++
T Consensus       146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~------------~~-------------~~~~-~~l~ell~  197 (331)
T 1xdw_A          146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I------------ED-------------YCTQ-VSLDEVLE  197 (331)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C------------TT-------------TCEE-CCHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H------------Hh-------------cccc-CCHHHHHh
Confidence            3689999999999999999999999999999976431  0            00             0111 134 3468


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      +||+|+.++|...+...-+-++..+.++++++++..+.+  +.-..+.+.+.
T Consensus       198 ~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~  249 (331)
T 1xdw_A          198 KSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVE  249 (331)
T ss_dssp             HCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             hCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHH
Confidence            899999999976544332224556678999988644433  33456666653

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.79  E-value=7.2e-05  Score=74.50  Aligned_cols=92  Identities=20%  Similarity=0.264  Sum_probs=61.7

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc---ccCc
Q 009395          148 KKVAILGG-GLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VLDY  221 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~  221 (535)
                      +||+|||+ |.+|.+++..|+..|  .+|+++|+++.  +.....+        .....        ..++..   ++++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~--~~~a~dL--------~~~~~--------~~~l~~~~~t~d~   62 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAADL--------SHIET--------RATVKGYLGPEQL   62 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHHHH--------TTSSS--------SCEEEEEESGGGH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCcc--HHHHHHH--------hccCc--------CceEEEecCCCCH
Confidence            48999998 999999999999998  68999999871  1111111        11110        013443   3567


Q ss_pred             c-cccCCCEEEEec--cCCh------------HHHHHHHHHHHhhcCCCce
Q 009395          222 E-SFKDVDMVIEAI--IENV------------SLKQQIFADLEKYCPPHCI  257 (535)
Q Consensus       222 ~-~~~~aDlVI~av--pe~~------------~~k~~v~~~l~~~~~~~~i  257 (535)
                      + ++++||+||.++  |..+            .+.+++.+.+.++.++..+
T Consensus        63 ~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~v  113 (314)
T 1mld_A           63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMI  113 (314)
T ss_dssp             HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred             HHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence            5 599999999987  3222            5677777788887754433

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.77  E-value=4.1e-05  Score=75.53  Aligned_cols=88  Identities=20%  Similarity=0.266  Sum_probs=59.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||+|.||..+|+.+...|.+|+++|++++..+.+.           +.|.          ..+. ..++ +.+++
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-----------~~g~----------~~~~-~~~l~~~l~~  213 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-----------EMGM----------EPFH-ISKAAQELRD  213 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HTTS----------EEEE-GGGHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-----------HCCC----------eecC-hhhHHHHhcC
Confidence            5899999999999999999999999999999987654321           1121          0010 1233 34789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ||+||.++|...-- .    +....++++.++++.+
T Consensus       214 aDvVi~~~p~~~i~-~----~~l~~mk~~~~lin~a  244 (293)
T 3d4o_A          214 VDVCINTIPALVVT-A----NVLAEMPSHTFVIDLA  244 (293)
T ss_dssp             CSEEEECCSSCCBC-H----HHHHHSCTTCEEEECS
T ss_pred             CCEEEECCChHHhC-H----HHHHhcCCCCEEEEec
Confidence            99999999864321 1    2233567777776443

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.74  E-value=6.5e-05  Score=65.88  Aligned_cols=101  Identities=15%  Similarity=0.068  Sum_probs=65.2

Q ss_pred             ceEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       148 ~kV~vIG~----G~mG~~iA~~l~~~G~~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      ++|+|||+    |.||..++..|.+.|++|+.+|++.  +.+                             ..+....++
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~sl   64 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYATL   64 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSST
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCCH
Confidence            57999999    8999999999999999977776654  211                             012233445


Q ss_pred             ccc-cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhc-CCCCcEEe
Q 009395          222 ESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVG  282 (535)
Q Consensus       222 ~~~-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig  282 (535)
                      +++ ..+|+||.|+|.  +...+++.++.+ ...+.+++. +++.. .++.+.+ ....+++|
T Consensus        65 ~el~~~~Dlvii~vp~--~~v~~v~~~~~~-~g~~~i~i~-~~~~~-~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           65 ADVPEKVDMVDVFRNS--EAAWGVAQEAIA-IGAKTLWLQ-LGVIN-EQAAVLAREAGLSVVM  122 (145)
T ss_dssp             TTCSSCCSEEECCSCS--THHHHHHHHHHH-HTCCEEECC-TTCCC-HHHHHHHHTTTCEEEC
T ss_pred             HHcCCCCCEEEEEeCH--HHHHHHHHHHHH-cCCCEEEEc-CChHH-HHHHHHHHHcCCEEEc
Confidence            443 578999999994  345677776665 344555543 45553 3444443 33456665

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.73  E-value=7.7e-06  Score=78.88  Aligned_cols=97  Identities=10%  Similarity=0.064  Sum_probs=61.9

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      +|+|||+|.||.+++..|++.|. +|+++||++++.+...+                      .++... ..++ +.+.+
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~----------------------~~~~~~-~~~~~~~~~~  166 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDF----------------------PVKIFS-LDQLDEVVKK  166 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCS----------------------SCEEEE-GGGHHHHHHT
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----------------------HcccCC-HHHHHhhhcC
Confidence            69999999999999999999998 99999999987653210                      001111 1222 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHH
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG  271 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  271 (535)
                      +|+||.|+|....-....+.  .+.++++.++++.... +..-+.
T Consensus       167 aDiVInatp~gm~p~~~~i~--~~~l~~~~~V~Divy~-~T~ll~  208 (253)
T 3u62_A          167 AKSLFNTTSVGMKGEELPVS--DDSLKNLSLVYDVIYF-DTPLVV  208 (253)
T ss_dssp             CSEEEECSSTTTTSCCCSCC--HHHHTTCSEEEECSSS-CCHHHH
T ss_pred             CCEEEECCCCCCCCCCCCCC--HHHhCcCCEEEEeeCC-CcHHHH
Confidence            99999999743210000010  1234677877776666 433333

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.71  E-value=0.00014  Score=72.80  Aligned_cols=102  Identities=19%  Similarity=0.268  Sum_probs=64.3

Q ss_pred             cceEEEEe-CChhhHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc---ccC
Q 009395          147 VKKVAILG-GGLMGSGIATALILSN--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VLD  220 (535)
Q Consensus       147 ~~kV~vIG-~G~mG~~iA~~l~~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~  220 (535)
                      .+||+|+| +|.+|.+++..|+..|  .+|+++|++++. ..+ ..+        .....        ...+..   +++
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~-~~~-~dL--------~~~~~--------~~~v~~~~~t~d   69 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP-GVT-ADI--------SHMDT--------GAVVRGFLGQQQ   69 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHH-HHH-HHH--------HTSCS--------SCEEEEEESHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcH-hHH-HHh--------hcccc--------cceEEEEeCCCC
Confidence            46899999 7999999999999999  799999998761 111 011        11000        012322   345


Q ss_pred             c-ccccCCCEEEEecc--CCh------------HHHHHHHHHHHhhcCCCceeeecCCcCcHHH
Q 009395          221 Y-ESFKDVDMVIEAII--ENV------------SLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (535)
Q Consensus       221 ~-~~~~~aDlVI~avp--e~~------------~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~  269 (535)
                      + +++++||+||.++.  ..+            ...+++.+.+.++.+ +.++..  +|.|+..
T Consensus        70 ~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p-~~~viv--~SNPv~~  130 (326)
T 1smk_A           70 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCP-RAIVNL--ISNPVNS  130 (326)
T ss_dssp             HHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCT-TSEEEE--CCSSHHH
T ss_pred             HHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEE--ECCchHH
Confidence            5 45899999999973  211            456667777777764 444432  2345444

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.67  E-value=0.00011  Score=72.84  Aligned_cols=94  Identities=18%  Similarity=0.259  Sum_probs=60.1

Q ss_pred             ceEEEEe-CChhhHHHHHHHHhC-C--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc---ccC
Q 009395          148 KKVAILG-GGLMGSGIATALILS-N--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG---VLD  220 (535)
Q Consensus       148 ~kV~vIG-~G~mG~~iA~~l~~~-G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~  220 (535)
                      +||+||| +|.+|.+++..|+.. +  .+++++|+++ .++.....+.        ....        ...+..   +++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~--------~~~~--------~~~v~~~~~~~~   63 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLS--------HIPT--------AVKIKGFSGEDA   63 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHH--------TSCS--------SEEEEEECSSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhh--------CCCC--------CceEEEecCCCc
Confidence            4899999 899999999999876 5  4899999987 3321111111        1100        012322   246


Q ss_pred             cccccCCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          221 YESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       221 ~~~~~~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      ++++++||+||.+..  .            +..+.+++.+.+.++.+ +++++
T Consensus        64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vl  115 (312)
T 3hhp_A           64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCP-KACIG  115 (312)
T ss_dssp             HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEE
T ss_pred             HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEE
Confidence            788999999999862  1            23455666667777765 45443

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.67  E-value=0.00027  Score=70.79  Aligned_cols=99  Identities=15%  Similarity=0.161  Sum_probs=64.4

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCC----HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEVN----EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL  214 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~----~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~  214 (535)
                      .+||+|+|+ |.+|.+++..|+..|+       +|+++|++    +++++.....+.        .+..      .....
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~--------~~~~------~~~~~   70 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEID--------DCAF------PLLAG   70 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHH--------TTTC------TTEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHh--------hhcc------cccCc
Confidence            468999998 9999999999999886       89999999    554432111111        1100      01124


Q ss_pred             cccccCc-ccccCCCEEEEecc--C------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          215 LTGVLDY-ESFKDVDMVIEAII--E------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       215 i~~~~~~-~~~~~aDlVI~avp--e------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      +..+++. +++++||+||.+..  .            +..+.+++.+.+.++..++++++
T Consensus        71 i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii  130 (329)
T 1b8p_A           71 MTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVL  130 (329)
T ss_dssp             EEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             EEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            4445554 56899999998762  1            22345667777888764555443

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.67  E-value=0.00021  Score=73.78  Aligned_cols=73  Identities=19%  Similarity=0.226  Sum_probs=47.8

Q ss_pred             cceEEEEeCChh-hHHHHHHHHh--C---CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          147 VKKVAILGGGLM-GSGIATALIL--S---NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       147 ~~kV~vIG~G~m-G~~iA~~l~~--~---G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      .+||+|||+|.. +.+++..|+.  .   +.+|+++|+++++++... .+...+   ...          . .+++.++|
T Consensus         2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~-~~~~~~---~~~----------~-~~v~~t~d   66 (417)
T 1up7_A            2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFVKRL---VKD----------R-FKVLISDT   66 (417)
T ss_dssp             CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHHHHH---HTT----------S-SEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHH-HHHHHH---hhC----------C-eEEEEeCC
Confidence            469999999884 2223334454  3   458999999999877532 222211   110          0 24666678


Q ss_pred             c-ccccCCCEEEEec
Q 009395          221 Y-ESFKDVDMVIEAI  234 (535)
Q Consensus       221 ~-~~~~~aDlVI~av  234 (535)
                      + +++++||+||.++
T Consensus        67 ~~~al~~AD~Viita   81 (417)
T 1up7_A           67 FEGAVVDAKYVIFQF   81 (417)
T ss_dssp             HHHHHTTCSEEEECC
T ss_pred             HHHHhCCCCEEEEcC
Confidence            6 7799999999998

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.67  E-value=0.00038  Score=65.21  Aligned_cols=94  Identities=16%  Similarity=0.210  Sum_probs=59.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc--cccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--ESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--~~~~  225 (535)
                      +||.|+|+|.+|..+|..|.+.|++|+++|++++.++...+.    ....+-.|-.+..            ..+  ..+.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~----~~~~~i~gd~~~~------------~~l~~a~i~   64 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK----LKATIIHGDGSHK------------EILRDAEVS   64 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH----SSSEEEESCTTSH------------HHHHHHTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----cCCeEEEcCCCCH------------HHHHhcCcc
Confidence            479999999999999999999999999999999987654311    0000000111000            011  1367


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhh-cCCCceee
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKY-CPPHCILA  259 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~-~~~~~ii~  259 (535)
                      +||+||.+++++..  ...+..+... .+...+++
T Consensus        65 ~ad~vi~~~~~d~~--n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           65 KNDVVVILTPRDEV--NLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             TTCEEEECCSCHHH--HHHHHHHHHHTSCCCEEEE
T ss_pred             cCCEEEEecCCcHH--HHHHHHHHHHHcCCCeEEE
Confidence            89999999986532  3334444443 44445554

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.61  E-value=0.00015  Score=69.14  Aligned_cols=88  Identities=18%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEE-EeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVIL-KEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l-~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      +|.||+|+|+|.||..++..+...+.+++. +|++.+.                ..             .+..+++++++
T Consensus         2 ~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~~-------------gv~v~~dl~~l   52 (243)
T 3qy9_A            2 ASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------TT-------------PYQQYQHIADV   52 (243)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------------------C-------------CSCBCSCTTTC
T ss_pred             CceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------cC-------------CCceeCCHHHH
Confidence            367999999999999999999988767554 7887552                01             12345566554


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHH
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~  269 (535)
                      .++|+||++..+  +   .+...+.  +..+.-+++.|++++.++
T Consensus        53 ~~~DVvIDft~p--~---a~~~~~~--l~~g~~vVigTTG~s~e~   90 (243)
T 3qy9_A           53 KGADVAIDFSNP--N---LLFPLLD--EDFHLPLVVATTGEKEKL   90 (243)
T ss_dssp             TTCSEEEECSCH--H---HHHHHHT--SCCCCCEEECCCSSHHHH
T ss_pred             hCCCEEEEeCCh--H---HHHHHHH--HhcCCceEeCCCCCCHHH
Confidence            499999987642  2   2233333  555554555666665543

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.53  E-value=0.0005  Score=68.36  Aligned_cols=98  Identities=19%  Similarity=0.208  Sum_probs=61.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC--
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD--  220 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--  220 (535)
                      +||+|+|+ |.+|..++..++..|+  ++.++|+  ++++++.....+.+.. .  ..+.         .-.+..+++  
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~--~~~~---------~~~i~~~~d~l   68 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-A--GTRS---------DANIYVESDEN   68 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-T--TSCC---------CCEEEEEETTC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-H--hcCC---------CeEEEeCCcch
Confidence            48999999 9999999999998885  6999999  7765543222222211 0  0000         002332333  


Q ss_pred             cccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          221 YESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       221 ~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      .+++++||+||.+.  |.            +..+.+++.+.+.++.  +.++.
T Consensus        69 ~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vl  119 (313)
T 1hye_A           69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIF  119 (313)
T ss_dssp             GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEE
T ss_pred             HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEE
Confidence            57899999999886  22            2234556666777776  44443

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.53  E-value=7.4e-05  Score=78.09  Aligned_cols=96  Identities=20%  Similarity=0.172  Sum_probs=65.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||.++|..+...|.+|++||+++.....+.           ..|.             .. .++ +.+++
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-----------~~g~-------------~~-~~l~ell~~  312 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-----------MEGF-------------NV-VTLDEIVDK  312 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-----------TTTC-------------EE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-----------HcCC-------------Ee-cCHHHHHhc
Confidence            5899999999999999999999999999999987643221           1121             11 234 44789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc---CcHHHHHh
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGE  272 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~  272 (535)
                      ||+||.+.. ...+   +-++..+.++++++|+..+++   +....+.+
T Consensus       313 aDiVi~~~~-t~~l---I~~~~l~~MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          313 GDFFITCTG-NVDV---IKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             CSEEEECCS-SSSS---BCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             CCEEEECCC-hhhh---cCHHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence            999999962 2221   113445568999988755443   23445555

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.51  E-value=7.8e-05  Score=78.20  Aligned_cols=88  Identities=19%  Similarity=0.141  Sum_probs=61.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.||.++|+.+...|.+|++||+++.....+.           ..|.             .. .++ +.+++
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-----------~~G~-------------~~-~~l~ell~~  332 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-----------MEGY-------------RV-VTMEYAADK  332 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-----------TTTC-------------EE-CCHHHHTTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-----------HcCC-------------Ee-CCHHHHHhc
Confidence            5899999999999999999999999999999987632211           1121             11 234 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      ||+||.++. ...+   +-++..+.++++++|+..+++
T Consensus       333 aDiVi~~~~-t~~l---I~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          333 ADIFVTATG-NYHV---INHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             CSEEEECSS-SSCS---BCHHHHHHCCTTEEEEECSSS
T ss_pred             CCEEEECCC-cccc---cCHHHHhhCCCCcEEEEcCCC
Confidence            999999983 2221   113455668999988755544

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.48  E-value=0.00029  Score=74.05  Aligned_cols=75  Identities=19%  Similarity=0.271  Sum_probs=48.5

Q ss_pred             ceEEEEeCChhhHH--HHHHHHh----C--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          148 KKVAILGGGLMGSG--IATALIL----S--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       148 ~kV~vIG~G~mG~~--iA~~l~~----~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      +||+|||+|..|..  +...++.    .  +.+|+++|+++++++.....+++.....   |.         --++..++
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~---~~---------~~~i~~t~   68 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEEL---NS---------PVKVVKTE   68 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHH---TC---------CCEEEEES
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHc---CC---------CeEEEEeC
Confidence            48999999998754  3333332    2  3479999999998765443333322111   10         12466778


Q ss_pred             Cc-ccccCCCEEEEec
Q 009395          220 DY-ESFKDVDMVIEAI  234 (535)
Q Consensus       220 ~~-~~~~~aDlVI~av  234 (535)
                      |. +++++||+||.++
T Consensus        69 d~~eAl~gAD~Vi~~~   84 (477)
T 3u95_A           69 SLDEAIEGADFIINTA   84 (477)
T ss_dssp             CHHHHHTTCSEEEECC
T ss_pred             CHHHHhCCCCEEEECc
Confidence            87 5589999999886

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.47  E-value=0.00015  Score=76.16  Aligned_cols=87  Identities=25%  Similarity=0.235  Sum_probs=62.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||+|.||..+|+.+...|.+|+++|+++++++.+.           +.|.             .. .++ +.+++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~-----------~~Ga-------------~~-~~l~e~l~~  329 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAM-----------MEGF-------------DV-VTVEEAIGD  329 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC-------------EE-CCHHHHGGG
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----------HcCC-------------EE-ecHHHHHhC
Confidence            5899999999999999999999999999999998865443           1221             00 122 34678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +|+||+|++...-+.    .+..+.++++.+++...+
T Consensus       330 aDvVi~atgt~~~i~----~~~l~~mk~ggilvnvG~  362 (494)
T 3ce6_A          330 ADIVVTATGNKDIIM----LEHIKAMKDHAILGNIGH  362 (494)
T ss_dssp             CSEEEECSSSSCSBC----HHHHHHSCTTCEEEECSS
T ss_pred             CCEEEECCCCHHHHH----HHHHHhcCCCcEEEEeCC
Confidence            999999986543221    244456788887764443

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.44  E-value=0.00044  Score=69.66  Aligned_cols=97  Identities=11%  Similarity=0.195  Sum_probs=62.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+                      .++ ....+++++ 
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------------------~~g-~~~~~~~~~~   60 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE----------------------ANG-AEAVASPDEV   60 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------------------TTT-CEEESSHHHH
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH----------------------HcC-CceeCCHHHH
Confidence            46899999999999999999876 67766 89999988665321                      011 223455544 


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHH
Q 009395          224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI  270 (535)
Q Consensus       224 ~~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  270 (535)
                      +.  ++|+|+.|+|.....  ++.....+.  ...+++....+.++++.
T Consensus        61 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~~  105 (344)
T 3euw_A           61 FARDDIDGIVIGSPTSTHV--DLITRAVER--GIPALCEKPIDLDIEMV  105 (344)
T ss_dssp             TTCSCCCEEEECSCGGGHH--HHHHHHHHT--TCCEEECSCSCSCHHHH
T ss_pred             hcCCCCCEEEEeCCchhhH--HHHHHHHHc--CCcEEEECCCCCCHHHH
Confidence            44  799999999976542  333332221  12355544445555543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.43  E-value=0.00043  Score=70.06  Aligned_cols=71  Identities=23%  Similarity=0.330  Sum_probs=52.7

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          146 RVKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      ++.||+|||+|.||..++..+.+.  +++++ ++|+++++++...+.          .|             +...++++
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----------~~-------------~~~~~~~~   68 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----------TG-------------ARGHASLT   68 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------HC-------------CEEESCHH
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----------cC-------------CceeCCHH
Confidence            457899999999999999999887  67755 899999987654321          01             23345665


Q ss_pred             c-c--cCCCEEEEeccCChH
Q 009395          223 S-F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       223 ~-~--~~aDlVI~avpe~~~  239 (535)
                      + +  .++|+|+.|+|....
T Consensus        69 ~ll~~~~~D~V~i~tp~~~h   88 (354)
T 3q2i_A           69 DMLAQTDADIVILTTPSGLH   88 (354)
T ss_dssp             HHHHHCCCSEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEECCCcHHH
Confidence            4 3  379999999997644

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.42  E-value=0.00011  Score=74.39  Aligned_cols=110  Identities=12%  Similarity=0.109  Sum_probs=64.4

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHH-H---HHHHc-CC---CCHHHHHhhhccccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANL-Q---SRVKK-GK---MTQEKFEKTISLLTG  217 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~-~---~~~~~-g~---~~~~~~~~~~~~i~~  217 (535)
                      +-.||+|||+|.||..+|+.+...|.+|+++|+++++++.+.+. -..+ .   ..... +.   ++.+....      .
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l-Ga~~~~l~~~~~~~~gya~~~~~~~~~~------~  255 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV-GAQWLDLGIDAAGEGGYARELSEAERAQ------Q  255 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT-TCEECCCC-------------CHHHHHH------H
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccchhhhhHHHHhh------h
Confidence            34689999999999999999999999999999999887665320 0000 0   00000 00   01110000      0


Q ss_pred             ccCc-ccccCCCEEEEec--cCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          218 VLDY-ESFKDVDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       218 ~~~~-~~~~~aDlVI~av--pe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ..++ +.+++||+||.++  |.... ..-+-++..+.++++.+|+..++
T Consensus       256 ~~~l~e~l~~aDIVI~tv~iPg~~a-p~Lvt~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          256 QQALEDAITKFDIVITTALVPGRPA-PRLVTAAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCC-CCCBCHHHHHTSCTTCEEEETTG
T ss_pred             HHHHHHHHhcCCEEEECCCCCCccc-ceeecHHHHhcCCCCcEEEEEeC
Confidence            1122 4578999999986  43111 00122455566788888876543

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.40  E-value=0.00012  Score=69.68  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=29.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcE-EEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPV-ILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V-~l~d~~~  180 (535)
                      +||+|||+|.||..++..+.+.|++| .+||+++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~   34 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG   34 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc
Confidence            37999999999999999999899997 6999884

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.40  E-value=7.1e-05  Score=75.08  Aligned_cols=101  Identities=16%  Similarity=0.145  Sum_probs=70.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      -++|+|||.|.+|..+|..+..-|.+|..||+.......             +.+             +. ..+++ .++
T Consensus       141 g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-------------~~~-------------~~-~~~l~ell~  193 (334)
T 3kb6_A          141 RLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLK-------------EKG-------------CV-YTSLDELLK  193 (334)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT-------------CE-ECCHHHHHH
T ss_pred             CcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhh-------------hcC-------------ce-ecCHHHHHh
Confidence            368999999999999999999999999999986543110             111             11 12343 478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc---CcHHHHHhhcC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGERTY  275 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~~~  275 (535)
                      .||+|+.++|-..+.+.-+=++....++++++++ |+|-   +.-+.|.+.+.
T Consensus       194 ~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~iVde~aL~~aL~  245 (334)
T 3kb6_A          194 ESDVISLHVPYTKETHHMINEERISLMKDGVYLI-NTARGKVVDTDALYRAYQ  245 (334)
T ss_dssp             HCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred             hCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEE-ecCccccccHHHHHHHHH
Confidence            9999999999776654333345666789999886 6653   34456767663

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.39  E-value=0.00066  Score=67.21  Aligned_cols=98  Identities=12%  Similarity=0.048  Sum_probs=61.8

Q ss_pred             CcceEEEEeCChhhHH-HHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          146 RVKKVAILGGGLMGSG-IATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~-iA~~l~~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +..||+|||+|.||.. ++..+.+ .+++++ ++|+++++.+...+.          .|             +...++++
T Consensus         5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~~-------------~~~~~~~~   61 (308)
T 3uuw_A            5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSD----------YR-------------IMPFDSIE   61 (308)
T ss_dssp             CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHH----------HT-------------CCBCSCHH
T ss_pred             ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC-------------CCCcCCHH
Confidence            4568999999999996 8887876 467777 899999987654321          11             11134454


Q ss_pred             c-ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHH
Q 009395          223 S-FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI  270 (535)
Q Consensus       223 ~-~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  270 (535)
                      + +.++|+|+.|+|.....  ++.....+.  ...+++.-..+.++++.
T Consensus        62 ~ll~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~~~  106 (308)
T 3uuw_A           62 SLAKKCDCIFLHSSTETHY--EIIKILLNL--GVHVYVDKPLASTVSQG  106 (308)
T ss_dssp             HHHTTCSEEEECCCGGGHH--HHHHHHHHT--TCEEEECSSSSSSHHHH
T ss_pred             HHHhcCCEEEEeCCcHhHH--HHHHHHHHC--CCcEEEcCCCCCCHHHH
Confidence            3 56899999999976542  333332221  12255544555665543

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.37  E-value=0.00046  Score=70.26  Aligned_cols=154  Identities=16%  Similarity=0.132  Sum_probs=93.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      =++|+|||.|..|.+-|..|..+|.+|++--|.....+..     +.+.+..+.|             +...+-.++++.
T Consensus        37 gK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~-----~S~~~A~~~G-------------f~v~~~~eA~~~   98 (491)
T 3ulk_A           37 GKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR-----ASWRKATENG-------------FKVGTYEELIPQ   98 (491)
T ss_dssp             TSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTC-----HHHHHHHHTT-------------CEEEEHHHHGGG
T ss_pred             CCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCccccc-----chHHHHHHCC-------------CEecCHHHHHHh
Confidence            3799999999999999999999999998876643211100     0111222333             223333467899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC----------CCCEEE
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH----------VMPLLE  296 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~----------~~~lve  296 (535)
                      ||+|+..+|+..  -.+++++|.++++++..+. -+.+..+..-.-..+....++-+-|-.|-+          ..|.+.
T Consensus        99 ADvV~~L~PD~~--q~~vy~~I~p~lk~G~~L~-faHGFnI~~~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~li  175 (491)
T 3ulk_A           99 ADLVINLTPDKQ--HSDVVRTVQPLMKDGAALG-YSHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLI  175 (491)
T ss_dssp             CSEEEECSCGGG--HHHHHHHHGGGSCTTCEEE-ESSCHHHHTTCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEeCChhh--HHHHHHHHHhhCCCCCEEE-ecCcccccccccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEE
Confidence            999999999754  4678899999999998775 355555432111111123344444433321          123332


Q ss_pred             EE-eCCCCCHHHHHHHHHHHHhcCCc
Q 009395          297 IV-RTNQTSPQVIVDLLDIGKKIKKT  321 (535)
Q Consensus       297 iv-~~~~ts~e~~~~~~~l~~~lGk~  321 (535)
                      -+ +....+-...+.+..+...+|..
T Consensus       176 AVhqeqD~sG~a~~~AlayA~aiG~~  201 (491)
T 3ulk_A          176 AVHPENDPKGEGMAIAKAWAAATGGH  201 (491)
T ss_dssp             EECGGGCTTSCHHHHHHHHHHHHTGG
T ss_pred             EEEeCCCCchhHHHHHHHHHHhcCCC
Confidence            23 22233445677788888888853

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.37  E-value=0.00018  Score=73.85  Aligned_cols=86  Identities=16%  Similarity=0.145  Sum_probs=59.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.+|.++|..+...|.+|+++|+++.....+.           ..|             ... .++ +.+++
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-----------~~G-------------~~~-~sL~eal~~  266 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-----------MEG-------------YQV-LLVEDVVEE  266 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEE-CCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-----------HhC-------------Cee-cCHHHHHhh
Confidence            5899999999999999999999999999999987654322           112             111 234 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ||+||.+.....-+.    ++..+.++++++|+..+
T Consensus       267 ADVVilt~gt~~iI~----~e~l~~MK~gAIVINvg  298 (436)
T 3h9u_A          267 AHIFVTTTGNDDIIT----SEHFPRMRDDAIVCNIG  298 (436)
T ss_dssp             CSEEEECSSCSCSBC----TTTGGGCCTTEEEEECS
T ss_pred             CCEEEECCCCcCccC----HHHHhhcCCCcEEEEeC
Confidence            999998653221111    23455678999886433

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.37  E-value=0.00011  Score=75.13  Aligned_cols=41  Identities=17%  Similarity=0.139  Sum_probs=37.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      -.||+|||+|.||..+++.+...|.+|+++|+++++++.+.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~  230 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVA  230 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            36899999999999999999999999999999998876553

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.36  E-value=0.00034  Score=70.12  Aligned_cols=99  Identities=10%  Similarity=-0.013  Sum_probs=62.3

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      +..||+|||+|.||..++..+.+. +++|+ ++|+++++.+...+.          .|.            ....+++++
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~~------------~~~~~~~~~   61 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKE----------LAI------------PVAYGSYEE   61 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHH----------TTC------------CCCBSSHHH
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH----------cCC------------CceeCCHHH
Confidence            356899999999999999999885 67766 789998876554321          111            123445544


Q ss_pred             -cc--CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHH
Q 009395          224 -FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI  270 (535)
Q Consensus       224 -~~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  270 (535)
                       +.  ++|+|+.|+|.....  ++.....+.  ...+++-...+.++++.
T Consensus        62 ll~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~vl~EKP~~~~~~e~  107 (330)
T 3e9m_A           62 LCKDETIDIIYIPTYNQGHY--SAAKLALSQ--GKPVLLEKPFTLNAAEA  107 (330)
T ss_dssp             HHHCTTCSEEEECCCGGGHH--HHHHHHHHT--TCCEEECSSCCSSHHHH
T ss_pred             HhcCCCCCEEEEcCCCHHHH--HHHHHHHHC--CCeEEEeCCCCCCHHHH
Confidence             33  799999999976542  333322221  12355544445565543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.35  E-value=0.00041  Score=69.04  Aligned_cols=96  Identities=9%  Similarity=0.037  Sum_probs=59.2

Q ss_pred             CcceEEEEeCChhhHH-HHHHHHh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          146 RVKKVAILGGGLMGSG-IATALIL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~-iA~~l~~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +..||+|||+|.||.. ++..+.+ .|++|+ ++|+++++.+...+.          .|             +...++++
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g-------------~~~~~~~~   60 (319)
T 1tlt_A            4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES----------WR-------------IPYADSLS   60 (319)
T ss_dssp             -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH----------HT-------------CCBCSSHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------cC-------------CCccCcHH
Confidence            3468999999999997 8888776 477766 899998876543211          11             11234444


Q ss_pred             cc-cCCCEEEEeccCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHH
Q 009395          223 SF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNL  269 (535)
Q Consensus       223 ~~-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  269 (535)
                      ++ .++|+|+.|+|.....  ++....   +..+. +++.-..+.++++
T Consensus        61 ~l~~~~D~V~i~tp~~~h~--~~~~~a---l~~G~~v~~eKP~~~~~~~  104 (319)
T 1tlt_A           61 SLAASCDAVFVHSSTASHF--DVVSTL---LNAGVHVCVDKPLAENLRD  104 (319)
T ss_dssp             HHHTTCSEEEECSCTTHHH--HHHHHH---HHTTCEEEEESSSCSSHHH
T ss_pred             HhhcCCCEEEEeCCchhHH--HHHHHH---HHcCCeEEEeCCCCCCHHH
Confidence            44 6799999999976432  222222   23343 5554344555554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.34  E-value=0.0012  Score=58.00  Aligned_cols=38  Identities=11%  Similarity=0.068  Sum_probs=33.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC-HHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN-EKFLEA  185 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~-~~~~~~  185 (535)
                      ++|.|+|+|.+|..++..|...|++|+++|++ ++.++.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~   42 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQ   42 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHH
Confidence            57999999999999999999999999999997 555443

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.33  E-value=0.00076  Score=67.26  Aligned_cols=70  Identities=21%  Similarity=0.145  Sum_probs=49.2

Q ss_pred             ceEEEEeCChhhH-HHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009395          148 KKVAILGGGLMGS-GIATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~-~iA~~l~~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  224 (535)
                      .||+|||+|.||. .++..+.+. +++|+++|+++++.+...+.          .|.           .....++.+.+ 
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~----------~g~-----------~~~~~~~~~~l~   61 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------YRV-----------SATCTDYRDVLQ   61 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------TTC-----------CCCCSSTTGGGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHH----------cCC-----------CccccCHHHHhh
Confidence            5899999999998 488888765 77888999999887654321          111           00022334455 


Q ss_pred             cCCCEEEEeccCCh
Q 009395          225 KDVDMVIEAIIENV  238 (535)
Q Consensus       225 ~~aDlVI~avpe~~  238 (535)
                      .++|+|+.|+|...
T Consensus        62 ~~~D~V~i~tp~~~   75 (323)
T 1xea_A           62 YGVDAVMIHAATDV   75 (323)
T ss_dssp             GCCSEEEECSCGGG
T ss_pred             cCCCEEEEECCchh
Confidence            68999999999654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.32  E-value=0.00034  Score=70.59  Aligned_cols=96  Identities=16%  Similarity=0.183  Sum_probs=60.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++|+|||+|.||..++..++.  ...+|++||+++++.++..+.+..      ..|.           .+...+++ +.
T Consensus       129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------~~g~-----------~~~~~~~~~ea  191 (350)
T 1x7d_A          129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSGL-----------TIRRASSVAEA  191 (350)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTTC-----------EEEECSSHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh------ccCc-----------eEEEeCCHHHH
Confidence            3589999999999999988753  346899999999988765432110      0010           12223444 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +++||+||.|+|....  ..++.  .+.+++++.+...+|
T Consensus       192 v~~aDiVi~aTps~~~--~pvl~--~~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          192 VKGVDIITTVTADKAY--ATIIT--PDMLEPGMHLNAVGG  227 (350)
T ss_dssp             HTTCSEEEECCCCSSE--EEEEC--GGGCCTTCEEEECSC
T ss_pred             HhcCCEEEEeccCCCC--Cceec--HHHcCCCCEEEECCC
Confidence            7899999999986410  01111  135667776654433

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.32  E-value=0.00074  Score=68.29  Aligned_cols=98  Identities=19%  Similarity=0.180  Sum_probs=62.6

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      ..||+|||+|.||..++..+.+. |++|+ ++|+++++.+...+.          .|             +...+++++ 
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----------~g-------------~~~~~~~~~~   61 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR----------YN-------------CAGDATMEAL   61 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH----------HT-------------CCCCSSHHHH
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------cC-------------CCCcCCHHHH
Confidence            35899999999999999999887 78855 889999887654321          11             112345543 


Q ss_pred             c--cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHH
Q 009395          224 F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG  271 (535)
Q Consensus       224 ~--~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  271 (535)
                      +  .++|+|+.|+|.....  ++.....+  ....+++-...+.++++..
T Consensus        62 l~~~~~D~V~i~tp~~~h~--~~~~~al~--~gk~vl~EKP~~~~~~~~~  107 (354)
T 3db2_A           62 LAREDVEMVIITVPNDKHA--EVIEQCAR--SGKHIYVEKPISVSLDHAQ  107 (354)
T ss_dssp             HHCSSCCEEEECSCTTSHH--HHHHHHHH--TTCEEEEESSSCSSHHHHH
T ss_pred             hcCCCCCEEEEeCChHHHH--HHHHHHHH--cCCEEEEccCCCCCHHHHH
Confidence            4  5799999999976543  22222222  1223565555556655433

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.28  E-value=0.0003  Score=68.12  Aligned_cols=65  Identities=20%  Similarity=0.207  Sum_probs=50.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      ++|.|||+|.||++++..|++.|.+|++++|++++.+... .+          +             +. ..+++++.++
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~----------~-------------~~-~~~~~~l~~~  173 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL----------G-------------CD-CFMEPPKSAF  173 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH----------T-------------CE-EESSCCSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC----------C-------------Ce-EecHHHhccC
Confidence            5899999999999999999999999999999988765432 11          1             11 1133445589


Q ss_pred             CEEEEeccCC
Q 009395          228 DMVIEAIIEN  237 (535)
Q Consensus       228 DlVI~avpe~  237 (535)
                      |+||.|+|..
T Consensus       174 DiVInaTp~G  183 (269)
T 3phh_A          174 DLIINATSAS  183 (269)
T ss_dssp             SEEEECCTTC
T ss_pred             CEEEEcccCC
Confidence            9999999854

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.27  E-value=0.0004  Score=69.75  Aligned_cols=100  Identities=13%  Similarity=0.185  Sum_probs=63.6

Q ss_pred             CcceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 009395          146 RVKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL  215 (535)
Q Consensus       146 ~~~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i  215 (535)
                      +--||+|+|+ |.+|.+++..++....       ++.++|+++..  ++....++..        ...      .....+
T Consensus        23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~--------~~~------~~~~~~   88 (345)
T 4h7p_A           23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELED--------CAF------PLLDKV   88 (345)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH--------TTC------TTEEEE
T ss_pred             CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhh--------cCc------cCCCcE
Confidence            3459999997 9999999999987754       79999997642  2211111110        000      011223


Q ss_pred             cccc-CcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceee
Q 009395          216 TGVL-DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       216 ~~~~-~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      ..++ +.+++++||+||.+.  |-            +..+.+++.+.|.++++++++++
T Consensus        89 ~~~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vl  147 (345)
T 4h7p_A           89 VVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVV  147 (345)
T ss_dssp             EEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             EEcCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEE
Confidence            3333 346799999999865  32            34466666677888888887544

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.27  E-value=0.0008  Score=67.32  Aligned_cols=96  Identities=17%  Similarity=0.242  Sum_probs=61.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      +.||+|||+|.||..++..+.+. +++|+ ++|+++++.+...+.          .|             +. .+++++ 
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~-------------~~-~~~~~~~   58 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA----------YG-------------CE-VRTIDAI   58 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TT-------------CE-ECCHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH----------hC-------------CC-cCCHHHH
Confidence            36899999999999999999875 77876 799999886654321          11             12 344443 


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHH
Q 009395          224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI  270 (535)
Q Consensus       224 ~~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  270 (535)
                      +.  ++|+|+.|+|.....  ++.....+.  ...+++-...+.++++.
T Consensus        59 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~~  103 (331)
T 4hkt_A           59 EAAADIDAVVICTPTDTHA--DLIERFARA--GKAIFCEKPIDLDAERV  103 (331)
T ss_dssp             HHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEECSCSCSSHHHH
T ss_pred             hcCCCCCEEEEeCCchhHH--HHHHHHHHc--CCcEEEecCCCCCHHHH
Confidence            33  799999999976542  333332221  22355544445666543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.27  E-value=0.00032  Score=69.17  Aligned_cols=40  Identities=18%  Similarity=0.231  Sum_probs=36.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|||+|.||.+++..|+..|. +|+++||++++++...
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la  182 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV  182 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            589999999999999999999998 9999999998876543

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.26  E-value=0.00022  Score=71.39  Aligned_cols=96  Identities=17%  Similarity=0.207  Sum_probs=62.7

Q ss_pred             cceEEEEe-CChhhHHHHHHHHhCCC--c-----EEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009395          147 VKKVAILG-GGLMGSGIATALILSNY--P-----VILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT  216 (535)
Q Consensus       147 ~~kV~vIG-~G~mG~~iA~~l~~~G~--~-----V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  216 (535)
                      ..||+|+| +|.+|.+++..|+..|.  +     ++++|+++  +.++.....+.+        ...      .....+.
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~--------~~~------~~~~~~~   68 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQD--------CAL------PLLKDVI   68 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH--------TCC------TTEEEEE
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHh--------hhh------cccCCEE
Confidence            36899999 69999999999999887  6     99999975  233322211111        000      0112233


Q ss_pred             ccc-CcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCc
Q 009395          217 GVL-DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHC  256 (535)
Q Consensus       217 ~~~-~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~  256 (535)
                      .++ +++++++||+||.+.  |.            +..+.+++.+.+.++.+++.
T Consensus        69 ~~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~  123 (333)
T 5mdh_A           69 ATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSV  123 (333)
T ss_dssp             EESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             EcCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence            333 357899999999875  21            33566777778888877764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.26  E-value=0.00015  Score=74.23  Aligned_cols=99  Identities=16%  Similarity=0.132  Sum_probs=61.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||+|.||..+++.+...|.+|+++|+++++++.+.+.          .|.--      .. ......++ +.++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~----------~g~~~------~~-~~~~~~~l~~~l~  230 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAE----------FCGRI------HT-RYSSAYELEGAVK  230 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TTTSS------EE-EECCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHh----------cCCee------Ee-ccCCHHHHHHHHc
Confidence            4789999999999999999999999999999999887654321          11100      00 00000112 2356


Q ss_pred             CCCEEEEeccCCh-HHHHHHHHHHHhhcCCCceeeecC
Q 009395          226 DVDMVIEAIIENV-SLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       226 ~aDlVI~avpe~~-~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ++|+||+|++... ....-+.++..+.++++.+|+..+
T Consensus       231 ~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          231 RADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             HCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            8999999884222 111111234445677777766443

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.25  E-value=0.00056  Score=68.28  Aligned_cols=70  Identities=17%  Similarity=0.105  Sum_probs=50.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALIL--SNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      ++|+|||+|.||..++..++.  ...+|.+||+++++.++..+.+..       .+ +          .+. .+++ +.+
T Consensus       126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e~v  186 (322)
T 1omo_A          126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEEAS  186 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHHHT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHHHh
Confidence            589999999999999998886  346899999999988766533211       01 0          122 3344 457


Q ss_pred             cCCCEEEEeccCC
Q 009395          225 KDVDMVIEAIIEN  237 (535)
Q Consensus       225 ~~aDlVI~avpe~  237 (535)
                       ++|+||.|+|..
T Consensus       187 -~aDvVi~aTp~~  198 (322)
T 1omo_A          187 -RCDVLVTTTPSR  198 (322)
T ss_dssp             -SSSEEEECCCCS
T ss_pred             -CCCEEEEeeCCC
Confidence             899999999854

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.24  E-value=0.00037  Score=69.20  Aligned_cols=91  Identities=14%  Similarity=0.167  Sum_probs=58.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++|+|||+|.||..++..+... + .+|++||++  +.+...+++...+      |.           .+... ++ +.
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~------g~-----------~~~~~-~~~ea  180 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRC------GV-----------PARMA-APADI  180 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHH------TS-----------CEEEC-CHHHH
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhc------CC-----------eEEEe-CHHHH
Confidence            35899999999999999988763 3 589999999  4333332221111      11           12223 44 45


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +++||+||.|+|....    ++.  .+.++++++|.+..|
T Consensus       181 v~~aDIVi~aT~s~~p----vl~--~~~l~~G~~V~~vGs  214 (313)
T 3hdj_A          181 AAQADIVVTATRSTTP----LFA--GQALRAGAFVGAIGS  214 (313)
T ss_dssp             HHHCSEEEECCCCSSC----SSC--GGGCCTTCEEEECCC
T ss_pred             HhhCCEEEEccCCCCc----ccC--HHHcCCCcEEEECCC
Confidence            7899999999986422    222  345778887765554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.22  E-value=0.00039  Score=67.70  Aligned_cols=70  Identities=21%  Similarity=0.301  Sum_probs=50.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc--c
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF--K  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~  225 (535)
                      ++|.|+|+|.||.+++..|++.|.+|++++|+.++.+...+.+.       ..+            .+.. .+++++  .
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~-------~~~------------~~~~-~~~~~~~~~  179 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQA-VSMDSIPLQ  179 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEE-EEGGGCCCS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcc-------ccC------------CeEE-eeHHHhccC
Confidence            58999999999999999999999999999999988765442211       000            1111 123344  3


Q ss_pred             CCCEEEEeccCC
Q 009395          226 DVDMVIEAIIEN  237 (535)
Q Consensus       226 ~aDlVI~avpe~  237 (535)
                      ++|+||.|+|..
T Consensus       180 ~~DivIn~t~~~  191 (272)
T 1p77_A          180 TYDLVINATSAG  191 (272)
T ss_dssp             CCSEEEECCCC-
T ss_pred             CCCEEEECCCCC
Confidence            899999999854

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.20  E-value=0.00089  Score=67.37  Aligned_cols=96  Identities=16%  Similarity=0.235  Sum_probs=60.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (535)
                      .||+|||+|.||..++..+.+. +++++ ++|+++++.+...+.          .|            .....+++++ +
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~----------~~------------~~~~~~~~~~ll   60 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK----------LG------------VEKAYKDPHELI   60 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH----------HT------------CSEEESSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----------hC------------CCceeCCHHHHh
Confidence            5899999999999999998875 67766 789999887654321          11            1123445544 3


Q ss_pred             c--CCCEEEEeccCChHHHHHHHHHHHhhcCCC-ceeeecCCcCcHHHH
Q 009395          225 K--DVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLI  270 (535)
Q Consensus       225 ~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l  270 (535)
                      .  ++|+|+.|+|.....  ++.....   ..+ .+++--..+.++.+.
T Consensus        61 ~~~~~D~V~i~tp~~~h~--~~~~~al---~~gk~v~~EKP~~~~~~e~  104 (344)
T 3ezy_A           61 EDPNVDAVLVCSSTNTHS--ELVIACA---KAKKHVFCEKPLSLNLADV  104 (344)
T ss_dssp             HCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEEESCSCSCHHHH
T ss_pred             cCCCCCEEEEcCCCcchH--HHHHHHH---hcCCeEEEECCCCCCHHHH
Confidence            3  799999999976442  2222222   223 355544445555543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.19  E-value=0.00079  Score=68.54  Aligned_cols=98  Identities=21%  Similarity=0.256  Sum_probs=59.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|+|+|.+|..++..+...|.+|+++|+++++++.+.+.          .|.-       .........++ +.+.+
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~----------~g~~-------~~~~~~~~~~l~~~~~~  229 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDV----------FGGR-------VITLTATEANIKKSVQH  229 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------TTTS-------EEEEECCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----------cCce-------EEEecCCHHHHHHHHhC
Confidence            789999999999999999999999999999999887654311          1110       00000000112 23568


Q ss_pred             CCEEEEeccCChH-HHHHHHHHHHhhcCCCceeeecC
Q 009395          227 VDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       227 aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      +|+||+|++.... ...-+.++..+.++++.+++..+
T Consensus       230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            9999999974321 10111344445566766665433

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.17  E-value=0.00063  Score=66.42  Aligned_cols=71  Identities=14%  Similarity=0.229  Sum_probs=51.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-c
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-K  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~  225 (535)
                      ++|.|+|+|.||.+++..|+..|. +|++++|++++.+...+.+.       ..+            .+... +++++ .
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~-------~~~------------~~~~~-~~~~l~~  186 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA-------AYG------------EVKAQ-AFEQLKQ  186 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEE-EGGGCCS
T ss_pred             CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh-------ccC------------CeeEe-eHHHhcC
Confidence            589999999999999999999997 99999999988765543211       001            11111 22322 6


Q ss_pred             CCCEEEEeccCCh
Q 009395          226 DVDMVIEAIIENV  238 (535)
Q Consensus       226 ~aDlVI~avpe~~  238 (535)
                      ++|+||.|+|...
T Consensus       187 ~aDiIInaTp~gm  199 (281)
T 3o8q_A          187 SYDVIINSTSASL  199 (281)
T ss_dssp             CEEEEEECSCCCC
T ss_pred             CCCEEEEcCcCCC
Confidence            8999999998653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.14  E-value=0.00084  Score=65.24  Aligned_cols=40  Identities=15%  Similarity=0.221  Sum_probs=36.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|+|+|.||.+++..|++.|.+|+++||++++++...
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la  159 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA  159 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            5799999999999999999999999999999998876543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.14  E-value=0.001  Score=68.36  Aligned_cols=88  Identities=20%  Similarity=0.242  Sum_probs=60.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+.           ..|.             .. .++ +.++.
T Consensus       248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-----------~~G~-------------~v-v~LeElL~~  302 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-----------MDGF-------------EV-VTLDDAAST  302 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTTC-------------EE-CCHHHHGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-----------hcCc-------------ee-ccHHHHHhh
Confidence            6899999999999999999999999999999987543221           1121             11 123 44789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI  265 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  265 (535)
                      ||+|+.+.... .+   +-++....++++++++ |++..
T Consensus       303 ADIVv~atgt~-~l---I~~e~l~~MK~GAILI-NvGRg  336 (464)
T 3n58_A          303 ADIVVTTTGNK-DV---ITIDHMRKMKDMCIVG-NIGHF  336 (464)
T ss_dssp             CSEEEECCSSS-SS---BCHHHHHHSCTTEEEE-ECSSS
T ss_pred             CCEEEECCCCc-cc---cCHHHHhcCCCCeEEE-EcCCC
Confidence            99999986422 11   1134455678999886 55543

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=97.13  E-value=0.00014  Score=76.25  Aligned_cols=121  Identities=21%  Similarity=0.212  Sum_probs=73.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchh--hcccCCCCC-c---h----HHHHHHHHHH
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT--LYKTDKIEP-L---G----EAREIFKFAR   70 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~--~~~~~~~~~-~---~----~~~~~~~~~~   70 (535)
                      |++||++++|+||+++||||+|||++++++.|.++|++++..+ |...+  ......+.. .   .    .....+..++
T Consensus       198 LlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~-p~Av~~K~l~~~~l~r~~~~~gl~y~~~~~ai~ra~  276 (556)
T 2w3p_A          198 FCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQS-DRPAHAQGVPLTRIERTDREDGLTYKTLDVTIDRAK  276 (556)
T ss_dssp             HTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTC-CCCTTCCCCCCCCCCCEEETTEEEETTEEEEEETTT
T ss_pred             HHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCC-hHHHhhhhhhcchhhhhhhhccccHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999864 32111  000000100 0   0    0000011111


Q ss_pred             HHHHHh-CCCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHH-HHHHHHHhhcccCCCC
Q 009395           71 AQARKQ-APNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETC-KSLVHIFFAQRGTSKV  134 (535)
Q Consensus        71 ~~~~~~-~~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~-~~~i~aF~~kr~~~~~  134 (535)
                      +.+... .++.+++.++++++..+.            ..|..+..++|. .+.++.|+.......+
T Consensus       277 r~a~~~~~g~~~a~~~~ld~i~aa~------------~~~~~l~~~~el~~All~l~~ne~~~~~~  330 (556)
T 2w3p_A          277 RIATFTAKAPQTEPPASIDAIVAAG------------ANWWPLKFAREFDDAILSMRTNELAVGTW  330 (556)
T ss_dssp             TEEEEEEECCSSCCCCSHHHHHHHG------------GGSHHHHHHHHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHHhcCCCCCchhhHHHHHHhh------------hcchhhhhhhHHHHHHHhhhhccHHHhHh
Confidence            111111 234667777777666543            444555555666 6788999887765443

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.11  E-value=0.0012  Score=67.66  Aligned_cols=86  Identities=22%  Similarity=0.290  Sum_probs=59.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|+|.|.+|..+|..+...|.+|+++|+++.....+.           ..|.             . ..++ +.++.
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~-----------~~G~-------------~-v~~Leeal~~  275 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQAC-----------MDGF-------------R-LVKLNEVIRQ  275 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTC-------------E-ECCHHHHTTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHH-----------HcCC-------------E-eccHHHHHhc
Confidence            6899999999999999999999999999999987543321           1121             1 1233 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ||+||.| +....+.   -++....++++++++...
T Consensus       276 ADIVi~a-tgt~~lI---~~e~l~~MK~gailINvg  307 (435)
T 3gvp_A          276 VDIVITC-TGNKNVV---TREHLDRMKNSCIVCNMG  307 (435)
T ss_dssp             CSEEEEC-SSCSCSB---CHHHHHHSCTTEEEEECS
T ss_pred             CCEEEEC-CCCcccC---CHHHHHhcCCCcEEEEec
Confidence            9999997 4432221   124445678888876443

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.10  E-value=0.0014  Score=66.17  Aligned_cols=98  Identities=17%  Similarity=0.068  Sum_probs=60.8

Q ss_pred             CCcceEEEEeCChhhH-HHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          145 RRVKKVAILGGGLMGS-GIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~-~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      ++..||+|||+|.||. .++..+.+. +++|+ ++|+++++.+...+.          .|             +...+++
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g-------------~~~~~~~   81 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER----------FG-------------GEPVEGY   81 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH----------HC-------------SEEEESH
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH----------cC-------------CCCcCCH
Confidence            4456899999999998 788888877 77765 889999876654321          11             1223455


Q ss_pred             cc-c--cCCCEEEEeccCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHHH
Q 009395          222 ES-F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI  270 (535)
Q Consensus       222 ~~-~--~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l  270 (535)
                      ++ +  .++|+|+.|+|.....  ++.....   ..+. +++--.-+.++++.
T Consensus        82 ~~ll~~~~~D~V~i~tp~~~h~--~~~~~al---~aGk~Vl~EKP~a~~~~ea  129 (350)
T 3rc1_A           82 PALLERDDVDAVYVPLPAVLHA--EWIDRAL---RAGKHVLAEKPLTTDRPQA  129 (350)
T ss_dssp             HHHHTCTTCSEEEECCCGGGHH--HHHHHHH---HTTCEEEEESSSCSSHHHH
T ss_pred             HHHhcCCCCCEEEECCCcHHHH--HHHHHHH---HCCCcEEEeCCCCCCHHHH
Confidence            44 3  3689999999976542  3333322   2232 55544445555543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.10  E-value=0.0015  Score=65.67  Aligned_cols=72  Identities=18%  Similarity=0.238  Sum_probs=49.9

Q ss_pred             CcceEEEEeCChhhHHHHHHHH-h-CCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          146 RVKKVAILGGGLMGSGIATALI-L-SNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~-~-~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +..||+|||+|.||..++..+. + .|++| .++|+++++++...+          +.|.            ....++++
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~----------~~g~------------~~~~~~~~   64 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKN----------ELGV------------ETTYTNYK   64 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHH----------TTCC------------SEEESCHH
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH----------HhCC------------CcccCCHH
Confidence            4568999999999999999987 4 47774 588999988654321          1111            01234454


Q ss_pred             c-cc--CCCEEEEeccCChH
Q 009395          223 S-FK--DVDMVIEAIIENVS  239 (535)
Q Consensus       223 ~-~~--~aDlVI~avpe~~~  239 (535)
                      + +.  ++|+|++|+|....
T Consensus        65 ~~l~~~~~D~V~i~tp~~~h   84 (346)
T 3cea_A           65 DMIDTENIDAIFIVAPTPFH   84 (346)
T ss_dssp             HHHTTSCCSEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEeCChHhH
Confidence            3 33  69999999997643

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.09  E-value=0.0012  Score=64.10  Aligned_cols=66  Identities=18%  Similarity=0.168  Sum_probs=49.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|.|||+|.||++++..|+..|. +|++++|+.++.+...+.+          +.             ....+++ +.+
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~----------~~-------------~~~~~~~-~~~  175 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY----------GY-------------AYINSLE-NQQ  175 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH----------TC-------------EEESCCT-TCC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC-------------ccchhhh-ccc
Confidence            579999999999999999999997 8999999998876543211          10             1111222 468


Q ss_pred             CCEEEEeccCC
Q 009395          227 VDMVIEAIIEN  237 (535)
Q Consensus       227 aDlVI~avpe~  237 (535)
                      +|+||.|+|..
T Consensus       176 ~DivInaTp~g  186 (271)
T 1npy_A          176 ADILVNVTSIG  186 (271)
T ss_dssp             CSEEEECSSTT
T ss_pred             CCEEEECCCCC
Confidence            99999999854

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.09  E-value=0.0013  Score=66.67  Aligned_cols=96  Identities=22%  Similarity=0.206  Sum_probs=60.2

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      +..||+|||+|.||...+..+.+. +++|+ ++|+++++.+.+.           +.|             +...+++++
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-----------~~g-------------~~~~~~~~~   59 (359)
T 3e18_A            4 KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-----------QKG-------------LKIYESYEA   59 (359)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-----------TTT-------------CCBCSCHHH
T ss_pred             CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------hcC-------------CceeCCHHH
Confidence            346899999999999999988876 67765 7899998764321           111             223455544


Q ss_pred             -cc--CCCEEEEeccCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHHH
Q 009395          224 -FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI  270 (535)
Q Consensus       224 -~~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l  270 (535)
                       +.  ++|+|+.|+|.....  ++.....   ..+. +++--..+.++++.
T Consensus        60 ll~~~~~D~V~i~tp~~~h~--~~~~~al---~aGkhVl~EKP~a~~~~ea  105 (359)
T 3e18_A           60 VLADEKVDAVLIATPNDSHK--ELAISAL---EAGKHVVCEKPVTMTSEDL  105 (359)
T ss_dssp             HHHCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEEESSCCSSHHHH
T ss_pred             HhcCCCCCEEEEcCCcHHHH--HHHHHHH---HCCCCEEeeCCCcCCHHHH
Confidence             33  799999999976542  2322222   2233 55544444555443

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.08  E-value=0.00059  Score=67.81  Aligned_cols=93  Identities=19%  Similarity=0.142  Sum_probs=59.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      ..||+|||+|.||..++..+.+. ++++ .++|+++++.+...+                         .+...+++++ 
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~-------------------------~~~~~~~~~~~   64 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP-------------------------GCVIESDWRSV   64 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT-------------------------TCEEESSTHHH
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh-------------------------hCcccCCHHHH
Confidence            46899999999999999999886 6764 589999887542210                         0223345544 


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHH
Q 009395          224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNL  269 (535)
Q Consensus       224 ~~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  269 (535)
                      ++  ++|+|+.|+|....  .++..+.   +..+. +++.-..+.++++
T Consensus        65 l~~~~~D~V~i~tp~~~h--~~~~~~a---l~~Gk~v~~eKP~~~~~~~  108 (315)
T 3c1a_A           65 VSAPEVEAVIIATPPATH--AEITLAA---IASGKAVLVEKPLTLDLAE  108 (315)
T ss_dssp             HTCTTCCEEEEESCGGGH--HHHHHHH---HHTTCEEEEESSSCSCHHH
T ss_pred             hhCCCCCEEEEeCChHHH--HHHHHHH---HHCCCcEEEcCCCcCCHHH
Confidence            43  79999999997643  2333332   22333 5544344555543

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.07  E-value=0.0017  Score=64.90  Aligned_cols=94  Identities=14%  Similarity=0.116  Sum_probs=58.0

Q ss_pred             eEEEEeCChhhHHH-HHHHHhCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-cc
Q 009395          149 KVAILGGGLMGSGI-ATALILSNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FK  225 (535)
Q Consensus       149 kV~vIG~G~mG~~i-A~~l~~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~  225 (535)
                      ||+|||+|.||..+ +..+.+.|++|+ ++|+++++.+...+.          .|.            ....+++++ +.
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~----------~g~------------~~~~~~~~~~l~   59 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATE----------NGI------------GKSVTSVEELVG   59 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------TTC------------SCCBSCHHHHHT
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHH----------cCC------------CcccCCHHHHhc
Confidence            79999999999998 777777788865 889999876543211          111            112344543 33


Q ss_pred             --CCCEEEEeccCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHH
Q 009395          226 --DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNL  269 (535)
Q Consensus       226 --~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  269 (535)
                        ++|+|+.|+|....  .++....   +..+. +++-...+.+..+
T Consensus        60 ~~~~D~V~i~tp~~~h--~~~~~~a---l~~Gk~v~~ekP~~~~~~~  101 (332)
T 2glx_A           60 DPDVDAVYVSTTNELH--REQTLAA---IRAGKHVLCEKPLAMTLED  101 (332)
T ss_dssp             CTTCCEEEECSCGGGH--HHHHHHH---HHTTCEEEECSSSCSSHHH
T ss_pred             CCCCCEEEEeCChhHh--HHHHHHH---HHCCCeEEEeCCCcCCHHH
Confidence              59999999996543  2333322   22344 4543334455554

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.06  E-value=0.0019  Score=65.00  Aligned_cols=97  Identities=11%  Similarity=0.135  Sum_probs=60.8

Q ss_pred             ceEEEEeCChhhHHHHHHHH-h-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          148 KKVAILGGGLMGSGIATALI-L-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~-~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      .||+|||+|.||..++..+. + .+++|+ ++|+++++.+...+.          .|.           .....+++++ 
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~----------~g~-----------~~~~~~~~~~l   61 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ----------YQL-----------NATVYPNDDSL   61 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH----------TTC-----------CCEEESSHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hCC-----------CCeeeCCHHHH
Confidence            58999999999999999998 4 477765 789999887654321          110           1223456654 


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHhhcCCC-ceeeecCCcCcHHHH
Q 009395          224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLI  270 (535)
Q Consensus       224 ~~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l  270 (535)
                      +.  ++|+|+.|+|.....  ++....   +..+ .+++--..+.++++.
T Consensus        62 l~~~~~D~V~i~tp~~~h~--~~~~~a---l~~Gk~vl~EKP~a~~~~e~  106 (344)
T 3mz0_A           62 LADENVDAVLVTSWGPAHE--SSVLKA---IKAQKYVFCEKPLATTAEGC  106 (344)
T ss_dssp             HHCTTCCEEEECSCGGGHH--HHHHHH---HHTTCEEEECSCSCSSHHHH
T ss_pred             hcCCCCCEEEECCCchhHH--HHHHHH---HHCCCcEEEcCCCCCCHHHH
Confidence            33  599999999976542  333222   2233 355544445555543

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.03  E-value=0.0017  Score=65.75  Aligned_cols=100  Identities=16%  Similarity=0.198  Sum_probs=61.6

Q ss_pred             CCcceEEEEeCChhhHHHHHHHH-h-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          145 RRVKKVAILGGGLMGSGIATALI-L-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~-~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      +...||+|||+|.||...+..+. . .|++|+ ++|+++++++...+.          .|.           .....+++
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~-----------~~~~~~~~   79 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK----------YAI-----------EAKDYNDY   79 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHH----------HTC-----------CCEEESSH
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHH----------hCC-----------CCeeeCCH
Confidence            34468999999999999999988 4 477766 799999887654321          110           12234555


Q ss_pred             cc-cc--CCCEEEEeccCChHHHHHHHHHHHhhcCCC-ceeeecCCcCcHHHH
Q 009395          222 ES-FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLI  270 (535)
Q Consensus       222 ~~-~~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l  270 (535)
                      ++ +.  ++|+|+.|+|.....  ++.....   ..+ .+++--.-+.++++.
T Consensus        80 ~~ll~~~~~D~V~i~tp~~~h~--~~~~~al---~aGk~Vl~EKPla~~~~e~  127 (357)
T 3ec7_A           80 HDLINDKDVEVVIITASNEAHA--DVAVAAL---NANKYVFCEKPLAVTAADC  127 (357)
T ss_dssp             HHHHHCTTCCEEEECSCGGGHH--HHHHHHH---HTTCEEEEESSSCSSHHHH
T ss_pred             HHHhcCCCCCEEEEcCCcHHHH--HHHHHHH---HCCCCEEeecCccCCHHHH
Confidence            44 33  689999999976542  3333322   223 355544445555543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.01  E-value=0.006  Score=57.19  Aligned_cols=129  Identities=13%  Similarity=0.182  Sum_probs=77.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|.|||+|.+|..-+..|+++|.+|++++.+... ++.           ..+.+.++         .+...-..+++.+
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~-----------l~~~~~i~---------~i~~~~~~~dL~~   91 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINE-----------WEAKGQLR---------VKRKKVGEEDLLN   91 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHH-----------HHHTTSCE---------EECSCCCGGGSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-----------HHHcCCcE---------EEECCCCHhHhCC
Confidence            68999999999999999999999999999876432 211           11222211         1111112356889


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC--CCCEEEEEeCCCCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQTS  304 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~ts  304 (535)
                      +|+||-|. ++.++-..+    ...+. ..|.+ |...-           |+   -..|+.|+-  .++++.-+...+.+
T Consensus        92 adLVIaAT-~d~~~N~~I----~~~ak-~gi~V-NvvD~-----------p~---~~~f~~Paiv~rg~l~iaIST~G~s  150 (223)
T 3dfz_A           92 VFFIVVAT-NDQAVNKFV----KQHIK-NDQLV-NMASS-----------FS---DGNIQIPAQFSRGRLSLAISTDGAS  150 (223)
T ss_dssp             CSEEEECC-CCTHHHHHH----HHHSC-TTCEE-EC-------------------CCSEECCEEEEETTEEEEEECTTSC
T ss_pred             CCEEEECC-CCHHHHHHH----HHHHh-CCCEE-EEeCC-----------cc---cCeEEEeeEEEeCCEEEEEECCCCC
Confidence            99999775 454443333    33344 33443 32211           11   112445542  36677777777788


Q ss_pred             HHHHHHHHHHHHh
Q 009395          305 PQVIVDLLDIGKK  317 (535)
Q Consensus       305 ~e~~~~~~~l~~~  317 (535)
                      |.....+++-++.
T Consensus       151 P~la~~iR~~ie~  163 (223)
T 3dfz_A          151 PLLTKRIKEDLSS  163 (223)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9888887777665

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.01  E-value=0.00016  Score=70.45  Aligned_cols=37  Identities=22%  Similarity=0.230  Sum_probs=34.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLE  184 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~  184 (535)
                      ++|.|||+|.||.+++..|++.|. +|++++|+.++.+
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~  155 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFN  155 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            579999999999999999999999 9999999987654

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.01  E-value=0.002  Score=65.09  Aligned_cols=106  Identities=14%  Similarity=0.125  Sum_probs=62.4

Q ss_pred             cceEEEEe-CChhhHHHHHHHHhCCC--c---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-cc
Q 009395          147 VKKVAILG-GGLMGSGIATALILSNY--P---VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VL  219 (535)
Q Consensus       147 ~~kV~vIG-~G~mG~~iA~~l~~~G~--~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~  219 (535)
                      ..||+||| +|.+|.+++..++..+.  +   +.++|.+.+..+...+...-   .+ ..+..      ..+..+.. +.
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~am---DL-~h~~~------p~~~~v~i~~~  101 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAM---EL-EDSLY------PLLREVSIGID  101 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHH---HH-HTTTC------TTEEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHH---hH-Hhhhh------hhcCCcEEecC
Confidence            46899999 79999999999998876  3   88876654332211111100   00 11110      01122333 34


Q ss_pred             CcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          220 DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       220 ~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      +++++++||+||.+.  |-            +..+.+.+...+.++..++++++..|
T Consensus       102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvs  158 (375)
T 7mdh_A          102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG  158 (375)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            578899999999864  22            22455555566777756677665444

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.99  E-value=0.0038  Score=64.42  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=36.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|+|.|.+|..++..|...|++|+++|.|++.++.+.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~   44 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLR   44 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            4799999999999999999999999999999999987653

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.99  E-value=0.0021  Score=55.82  Aligned_cols=103  Identities=15%  Similarity=0.098  Sum_probs=63.1

Q ss_pred             ceEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ++|+|||+    |.||..++..|.+.||+  +|++|+.....                         ....+....++++
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-------------------------~i~G~~~~~sl~e   66 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-------------------------ELFGEEAVASLLD   66 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-------------------------EETTEECBSSGGG
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-------------------------cCCCEEecCCHHH
Confidence            47999999    89999999999999997  67777663100                         0012233445555


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhc-CCCCcEEe
Q 009395          224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVG  282 (535)
Q Consensus       224 ~-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig  282 (535)
                      + ...|+++.++|.  +...++++++.+.-.. .++. ++++.. .++.+.. ...-+++|
T Consensus        67 l~~~vDlavi~vp~--~~~~~v~~~~~~~gi~-~i~~-~~g~~~-~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           67 LKEPVDILDVFRPP--SALMDHLPEVLALRPG-LVWL-QSGIRH-PEFEKALKEAGIPVVA  122 (140)
T ss_dssp             CCSCCSEEEECSCH--HHHTTTHHHHHHHCCS-CEEE-CTTCCC-HHHHHHHHHTTCCEEE
T ss_pred             CCCCCCEEEEEeCH--HHHHHHHHHHHHcCCC-EEEE-cCCcCH-HHHHHHHHHcCCEEEc
Confidence            4 469999999985  4556667766554333 4443 333333 3444433 22345555

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.97  E-value=0.0012  Score=64.48  Aligned_cols=42  Identities=19%  Similarity=0.270  Sum_probs=37.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~  189 (535)
                      +++.|+|+|.+|.+++..|+..|. +|++++|+.++.+...+.
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~  170 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV  170 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence            589999999999999999999999 699999999987765543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.96  E-value=0.0018  Score=62.89  Aligned_cols=41  Identities=15%  Similarity=0.135  Sum_probs=36.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      -+++.|+|+|.+|.+++..|++.|. +|++++|+.++.+...
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la  161 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR  161 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            3689999999999999999999996 9999999998876554

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.93  E-value=0.0023  Score=64.74  Aligned_cols=39  Identities=18%  Similarity=0.282  Sum_probs=35.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|+|+|+|.||..+|..|...|.+|+++|+++++++..
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~  212 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA  212 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            579999999999999999999999999999999876543

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.88  E-value=0.0016  Score=65.90  Aligned_cols=98  Identities=11%  Similarity=0.066  Sum_probs=60.2

Q ss_pred             CcceEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          146 RVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +..||+|||+|.||.. ++..+.+. +++|+ ++|+++++.+...+                      .++.....++++
T Consensus         4 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~----------------------~~~~~~~~~~~~   61 (359)
T 3m2t_A            4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHR----------------------FISDIPVLDNVP   61 (359)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGG----------------------TSCSCCEESSHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH----------------------hcCCCcccCCHH
Confidence            3468999999999985 88888766 67766 88999988654321                      111223345665


Q ss_pred             c-cc--CCCEEEEeccCChHHHHHHHHHHHhhcCCC-ceeeecCCcCcHHHH
Q 009395          223 S-FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLI  270 (535)
Q Consensus       223 ~-~~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l  270 (535)
                      + +.  +.|+|+.|+|....  .++....   +..+ .+++--..+.++++.
T Consensus        62 ~ll~~~~vD~V~i~tp~~~H--~~~~~~a---l~aGkhVl~EKPla~~~~e~  108 (359)
T 3m2t_A           62 AMLNQVPLDAVVMAGPPQLH--FEMGLLA---MSKGVNVFVEKPPCATLEEL  108 (359)
T ss_dssp             HHHHHSCCSEEEECSCHHHH--HHHHHHH---HHTTCEEEECSCSCSSHHHH
T ss_pred             HHhcCCCCCEEEEcCCcHHH--HHHHHHH---HHCCCeEEEECCCcCCHHHH
Confidence            4 33  56999999986543  2333332   2223 355544445555443

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.82  E-value=0.0012  Score=65.70  Aligned_cols=92  Identities=13%  Similarity=0.156  Sum_probs=58.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      ..||+|||+|.||..++..+.+. ++++ .++|++++. + .              +          . .+..+++++++
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~-~--------------~----------~-gv~~~~d~~~l   55 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-D-T--------------K----------T-PVFDVADVDKH   55 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-S-S--------------S----------S-CEEEGGGGGGT
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-h-h--------------c----------C-CCceeCCHHHH
Confidence            35899999999999999999877 5664 588988553 1 0              0          0 12234455543


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHHH
Q 009395          225 -KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI  270 (535)
Q Consensus       225 -~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l  270 (535)
                       .++|+||+|+|.... ...    +...+..+. ++++...+.++.++
T Consensus        56 l~~~DvViiatp~~~h-~~~----~~~al~aG~~Vv~ekp~~~~~~~~   98 (320)
T 1f06_A           56 ADDVDVLFLCMGSATD-IPE----QAPKFAQFACTVDTYDNHRDIPRH   98 (320)
T ss_dssp             TTTCSEEEECSCTTTH-HHH----HHHHHTTTSEEECCCCCGGGHHHH
T ss_pred             hcCCCEEEEcCCcHHH-HHH----HHHHHHCCCEEEECCCCcCCHHHH
Confidence             789999999987643 222    223333344 55555545555554

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.81  E-value=0.00084  Score=64.41  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      ++|.|||+|.+|+.+|..|++.|. +++++|.+.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            579999999999999999999998 899999986

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.79  E-value=0.0039  Score=60.46  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA  185 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~  185 (535)
                      ++||.|.|+|.+|+.++..|+++|++|++.+|+++..+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   43 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEA   43 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhh
Confidence            478999999999999999999999999999999876543

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.77  E-value=0.00095  Score=66.75  Aligned_cols=98  Identities=12%  Similarity=0.112  Sum_probs=58.9

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ++.||+|||+|.||..++..+.+. +.+|+ ++|+++++.+...+           .           .+.....+++++
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~-----------~-----------~~~~~~~~~~~~   61 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFAN-----------K-----------YHLPKAYDKLED   61 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC--------------C-----------CCCSCEESCHHH
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHH-----------H-----------cCCCcccCCHHH
Confidence            456899999999999999988765 45554 78999886543221           1           111123455544


Q ss_pred             -cc--CCCEEEEeccCChHHHHHHHHHHHhhcCCC-ceeeecCCcCcHHHH
Q 009395          224 -FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTSTIDLNLI  270 (535)
Q Consensus       224 -~~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~-~ii~s~tS~~~~~~l  270 (535)
                       +.  ++|+|+.|+|.....  ++....   +..+ .+++-..-+.++++.
T Consensus        62 ll~~~~~D~V~i~tp~~~h~--~~~~~a---l~aGk~Vl~EKP~a~~~~e~  107 (329)
T 3evn_A           62 MLADESIDVIYVATINQDHY--KVAKAA---LLAGKHVLVEKPFTLTYDQA  107 (329)
T ss_dssp             HHTCTTCCEEEECSCGGGHH--HHHHHH---HHTTCEEEEESSCCSSHHHH
T ss_pred             HhcCCCCCEEEECCCcHHHH--HHHHHH---HHCCCeEEEccCCcCCHHHH
Confidence             34  799999999976542  333222   2223 355554445555543

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.76  E-value=0.0037  Score=61.73  Aligned_cols=68  Identities=19%  Similarity=0.183  Sum_probs=43.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      ..||+|||+|.||..++..+.+. +++++ ++|+++++++.              .|.           .....+++.+.
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~-----------~~~~~~~l~~~   63 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQ-----------PFRVVSDIEQL   63 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCT-----------TSCEESSGGGS
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCC-----------CcCCHHHHHhC
Confidence            45899999999999999998874 67877 79999876431              121           01112333334


Q ss_pred             cCCCEEEEeccCChH
Q 009395          225 KDVDMVIEAIIENVS  239 (535)
Q Consensus       225 ~~aDlVI~avpe~~~  239 (535)
                      .++|+||+|+|....
T Consensus        64 ~~~DvViiatp~~~h   78 (304)
T 3bio_A           64 ESVDVALVCSPSREV   78 (304)
T ss_dssp             SSCCEEEECSCHHHH
T ss_pred             CCCCEEEECCCchhh
Confidence            789999999986543

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.76  E-value=0.0032  Score=61.60  Aligned_cols=75  Identities=21%  Similarity=0.146  Sum_probs=50.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      ++|.|+|+|.||.++|..|++.| +|++++|+.++++...+.+....      +. . ...     .+..++-.+.+.++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~------~~-~-~~~-----~~d~~~~~~~~~~~  194 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL------NK-K-FGE-----EVKFSGLDVDLDGV  194 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH------TC-C-HHH-----HEEEECTTCCCTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc------cc-c-cce-----eEEEeeHHHhhCCC
Confidence            57999999999999999999999 99999999988766544332110      00 0 000     01111113457889


Q ss_pred             CEEEEeccC
Q 009395          228 DMVIEAIIE  236 (535)
Q Consensus       228 DlVI~avpe  236 (535)
                      |+||.|++.
T Consensus       195 DilVn~ag~  203 (287)
T 1nvt_A          195 DIIINATPI  203 (287)
T ss_dssp             CEEEECSCT
T ss_pred             CEEEECCCC
Confidence            999999874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.76  E-value=0.0014  Score=66.43  Aligned_cols=40  Identities=30%  Similarity=0.336  Sum_probs=36.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|+|+|.+|..+++.+...|.+|+++|+++++++.+.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~  207 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE  207 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            7999999999999999999999999999999999876653

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.74  E-value=0.0016  Score=67.15  Aligned_cols=39  Identities=23%  Similarity=0.315  Sum_probs=35.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEA  185 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~  185 (535)
                      -++|+|||+|.||..++..+...|. +|+++|+++++.+.
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~  206 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVE  206 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence            3589999999999999999999998 89999999987643

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.74  E-value=0.0041  Score=64.85  Aligned_cols=86  Identities=21%  Similarity=0.228  Sum_probs=59.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|+|+|+|.+|.++|..|+..|.+|+++|+++.....+..           .|             ... .+. +.+..
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~-----------~g-------------~dv-~~lee~~~~  320 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATM-----------EG-------------LQV-LTLEDVVSE  320 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEE-CCGGGTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----------hC-------------Ccc-CCHHHHHHh
Confidence            57999999999999999999999999999999887654321           11             111 223 44678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      +|+|+++......+.    .+....++++.+|+...
T Consensus       321 aDvVi~atG~~~vl~----~e~l~~mk~gaiVvNaG  352 (488)
T 3ond_A          321 ADIFVTTTGNKDIIM----LDHMKKMKNNAIVCNIG  352 (488)
T ss_dssp             CSEEEECSSCSCSBC----HHHHTTSCTTEEEEESS
T ss_pred             cCEEEeCCCChhhhh----HHHHHhcCCCeEEEEcC
Confidence            999998864221121    22345578888776443

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.73  E-value=0.0077  Score=52.40  Aligned_cols=101  Identities=15%  Similarity=0.098  Sum_probs=61.8

Q ss_pred             ceEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ++|+|||+    |.+|..++..|.+.|++  +|++|+.. +.                          ...+....++++
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~--------------------------i~G~~~y~sl~~   73 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EE--------------------------VLGRKCYPSVLD   73 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SE--------------------------ETTEECBSSGGG
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-Ce--------------------------ECCeeccCCHHH
Confidence            47999999    79999999999999997  56666542 10                          011233345555


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhc-CCCCcEEe
Q 009395          224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERT-YSKDRIVG  282 (535)
Q Consensus       224 ~-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~-~~~~r~ig  282 (535)
                      + ..+|++|.++|.  +...+++.++.+.-. ..++.. ++ ..-.++.+.+ ....+++|
T Consensus        74 l~~~vDlvvi~vp~--~~~~~vv~~~~~~gi-~~i~~~-~g-~~~~~l~~~a~~~Gi~vvG  129 (144)
T 2d59_A           74 IPDKIEVVDLFVKP--KLTMEYVEQAIKKGA-KVVWFQ-YN-TYNREASKKADEAGLIIVA  129 (144)
T ss_dssp             CSSCCSEEEECSCH--HHHHHHHHHHHHHTC-SEEEEC-TT-CCCHHHHHHHHHTTCEEEE
T ss_pred             cCCCCCEEEEEeCH--HHHHHHHHHHHHcCC-CEEEEC-CC-chHHHHHHHHHHcCCEEEc
Confidence            4 469999999985  455677776655322 344432 33 3334444433 22345555

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.70  E-value=0.0066  Score=61.38  Aligned_cols=99  Identities=11%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      ..||+|||+|.||..++..+... ++++ .++|+++++.+...+.          .|. .        ......+++++ 
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~----------~~~-~--------~~~~~~~~~~~l   66 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATA----------NNY-P--------ESTKIHGSYESL   66 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH----------TTC-C--------TTCEEESSHHHH
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hCC-C--------CCCeeeCCHHHH
Confidence            46899999999999999988875 5665 5899999876543211          111 0        01223345554 


Q ss_pred             cc--CCCEEEEeccCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHH
Q 009395          224 FK--DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNL  269 (535)
Q Consensus       224 ~~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~  269 (535)
                      +.  ++|+|+.|+|....  .++...   .+..+. +++--..+.+.++
T Consensus        67 l~~~~~D~V~i~tp~~~h--~~~~~~---al~aGk~V~~EKP~a~~~~e  110 (362)
T 1ydw_A           67 LEDPEIDALYVPLPTSLH--VEWAIK---AAEKGKHILLEKPVAMNVTE  110 (362)
T ss_dssp             HHCTTCCEEEECCCGGGH--HHHHHH---HHTTTCEEEECSSCSSSHHH
T ss_pred             hcCCCCCEEEEcCChHHH--HHHHHH---HHHCCCeEEEecCCcCCHHH
Confidence            33  69999999997643  233222   334444 4443334455543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.67  E-value=0.002  Score=62.85  Aligned_cols=40  Identities=13%  Similarity=0.015  Sum_probs=35.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG  186 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~  186 (535)
                      -+++.|+|+|.+|.+++..|...|. +|++++|+.++.+..
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L  162 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI  162 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            3589999999999999999999998 899999999876543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.66  E-value=0.0073  Score=60.32  Aligned_cols=97  Identities=10%  Similarity=0.046  Sum_probs=59.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC---Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGGGLMGSGIATALILSN---YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G---~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      .||+|||+|.||..++..+...+   ++ |.++|+++++.+...+.          .|            .-...+++++
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~----------~~------------~~~~~~~~~~   60 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQK----------HD------------IPKAYGSYEE   60 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHH----------HT------------CSCEESSHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHH----------cC------------CCcccCCHHH
Confidence            58999999999999999887654   33 55789999887654321          11            1123455554


Q ss_pred             -c--cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHH
Q 009395          224 -F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI  270 (535)
Q Consensus       224 -~--~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  270 (535)
                       +  .++|+|+.|+|.....  ++..+..+.  ...+++--.-+.++++.
T Consensus        61 ll~~~~vD~V~i~tp~~~H~--~~~~~al~~--GkhVl~EKP~a~~~~e~  106 (334)
T 3ohs_X           61 LAKDPNVEVAYVGTQHPQHK--AAVMLCLAA--GKAVLCEKPMGVNAAEV  106 (334)
T ss_dssp             HHHCTTCCEEEECCCGGGHH--HHHHHHHHT--TCEEEEESSSSSSHHHH
T ss_pred             HhcCCCCCEEEECCCcHHHH--HHHHHHHhc--CCEEEEECCCCCCHHHH
Confidence             3  3699999999976542  322222221  12355544445555543

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.65  E-value=0.0012  Score=61.58  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=33.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE  184 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~  184 (535)
                      +||.|.|+ |.+|+.++..|+++|++|++++|+++.++
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~   38 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAA   38 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence            47999998 99999999999999999999999988764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.63  E-value=0.0041  Score=61.61  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=36.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~---~~~~~~~~~  188 (535)
                      +++.|+|+|.+|.+++..|+..|. +|++++|+   .++.+...+
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~  199 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVE  199 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHH
Confidence            589999999999999999999998 89999999   777665443

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.63  E-value=0.004  Score=62.29  Aligned_cols=71  Identities=13%  Similarity=0.026  Sum_probs=49.7

Q ss_pred             cceEEEEeCChhhH-HHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          147 VKKVAILGGGLMGS-GIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~-~iA~~l~~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      ..||+|||+|.||. .++..+...|++| .++|+++++.+...+.                      ++.....+++++ 
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~~l   61 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL----------------------FPSVPFAASAEQL   61 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH----------------------STTCCBCSCHHHH
T ss_pred             ccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHh----------------------cCCCcccCCHHHH
Confidence            45899999999996 6777777778885 6899998876543311                      111223455554 


Q ss_pred             cc--CCCEEEEeccCChH
Q 009395          224 FK--DVDMVIEAIIENVS  239 (535)
Q Consensus       224 ~~--~aDlVI~avpe~~~  239 (535)
                      +.  ++|+|+.|+|....
T Consensus        62 l~~~~~D~V~i~tp~~~h   79 (336)
T 2p2s_A           62 ITDASIDLIACAVIPCDR   79 (336)
T ss_dssp             HTCTTCCEEEECSCGGGH
T ss_pred             hhCCCCCEEEEeCChhhH
Confidence            33  69999999997654

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.58  E-value=0.0038  Score=61.72  Aligned_cols=40  Identities=18%  Similarity=0.141  Sum_probs=35.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC---HHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN---EKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~---~~~~~~~~  187 (535)
                      +++.|+|+|-+|.+++..|+..|. +|++++|+   .++.+...
T Consensus       149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la  192 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFA  192 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHH
Confidence            589999999999999999999998 89999999   66665544

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.57  E-value=0.0084  Score=62.28  Aligned_cols=77  Identities=16%  Similarity=0.116  Sum_probs=51.1

Q ss_pred             CCcceEEEEeCChhhH-HHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          145 RRVKKVAILGGGLMGS-GIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~-~iA~~l~~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      ++..||+|||+|.||. .++..+.+. +++| .++|+++++.+...+.          .|. ..       ..+...+++
T Consensus        81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~----------~g~-~~-------~~~~~~~~~  142 (433)
T 1h6d_A           81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE----------YGV-DP-------RKIYDYSNF  142 (433)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH----------TTC-CG-------GGEECSSSG
T ss_pred             CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH----------hCC-Cc-------ccccccCCH
Confidence            4456899999999997 898888765 5665 5899999876543211          111 00       012234556


Q ss_pred             cc-cc--CCCEEEEeccCChH
Q 009395          222 ES-FK--DVDMVIEAIIENVS  239 (535)
Q Consensus       222 ~~-~~--~aDlVI~avpe~~~  239 (535)
                      ++ +.  ++|+|++|+|....
T Consensus       143 ~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A          143 DKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             GGGGGCTTCCEEEECSCGGGH
T ss_pred             HHHhcCCCCCEEEEcCCchhH
Confidence            54 33  79999999997654

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.56  E-value=0.0027  Score=64.47  Aligned_cols=69  Identities=30%  Similarity=0.336  Sum_probs=48.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC---c-
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD---Y-  221 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~---~-  221 (535)
                      -+||.|||+|.+|+.+|..|++ .++|++.|++.+.++++.+.             .         ..+.. .+|   + 
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~-------------~---------~~~~~d~~d~~~l~   72 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF-------------A---------TPLKVDASNFDKLV   72 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT-------------S---------EEEECCTTCHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc-------------C---------CcEEEecCCHHHHH
Confidence            4589999999999999998865 58999999999887654210             0         01111 112   1 


Q ss_pred             ccccCCCEEEEeccCCh
Q 009395          222 ESFKDVDMVIEAIIENV  238 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~  238 (535)
                      +.++++|+||.|+|...
T Consensus        73 ~~~~~~DvVi~~~p~~~   89 (365)
T 3abi_A           73 EVMKEFELVIGALPGFL   89 (365)
T ss_dssp             HHHTTCSEEEECCCGGG
T ss_pred             HHHhCCCEEEEecCCcc
Confidence            23689999999998653

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.54  E-value=0.0054  Score=63.15  Aligned_cols=42  Identities=17%  Similarity=0.181  Sum_probs=36.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC---CcEEEEeCCHHHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSN---YPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G---~~V~l~d~~~~~~~~~~~  188 (535)
                      |+||+|+|+|.+|..++..|++.|   .+|+++|++.++++...+
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~   45 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQ   45 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHH
Confidence            468999999999999999999998   389999999998776543

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=96.49  E-value=0.03  Score=53.33  Aligned_cols=105  Identities=17%  Similarity=0.166  Sum_probs=76.1

Q ss_pred             ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhh---cCCC-CcEEeecccC-CCCCC
Q 009395          218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER---TYSK-DRIVGAHFFS-PAHVM  292 (535)
Q Consensus       218 ~~~~~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~---~~~~-~r~ig~h~~~-P~~~~  292 (535)
                      ++|.++++++|++|.-.|-.- .--++.+++.++++.++||+ ||.|+|+-.+...   +.+. -.+..+||-. |-..+
T Consensus       133 sDD~EAvk~AEi~IlftPfG~-~t~~Iakkii~~lpEgAII~-nTCTipp~~ly~~le~l~R~DvgIsS~HPaaVPgt~G  210 (358)
T 2b0j_A          133 SDDREAVEGADIVITWLPKGN-KQPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKG  210 (358)
T ss_dssp             SCHHHHHTTCSEEEECCTTCT-THHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCC
T ss_pred             cchHHHhcCCCEEEEecCCCC-CcHHHHHHHHhhCcCCCEEe-cccCCCHHHHHHHHHHhCcccCCeeccCCCCCCCCCC
Confidence            456688999999999998643 33578899999999999874 7778877655443   3433 3455666643 32223


Q ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          293 PLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       293 ~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      .  ....-...++|+++...++.+..|+.++.+.
T Consensus       211 q--~~~g~~yAtEEqIeklveLaksa~k~ay~vP  242 (358)
T 2b0j_A          211 Q--VYIAEGYASEEAVNKLYEIGKIARGKAFKMP  242 (358)
T ss_dssp             C--EEEEESSSCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred             c--cccccccCCHHHHHHHHHHHHHhCCCeEecc
Confidence            2  3344445689999999999999999999885

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.47  E-value=0.0022  Score=59.47  Aligned_cols=37  Identities=24%  Similarity=0.204  Sum_probs=33.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE  184 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~  184 (535)
                      +||.|+|+ |.+|+.++..|+++|++|++++|+++.++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~   38 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKIT   38 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhh
Confidence            47999996 99999999999999999999999987654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.41  E-value=0.0022  Score=65.92  Aligned_cols=40  Identities=20%  Similarity=0.125  Sum_probs=36.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      -.+|+|||+|.+|..++..+...|.+|+++|++++.++.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            3689999999999999999999999999999999876654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.40  E-value=0.0038  Score=65.41  Aligned_cols=41  Identities=24%  Similarity=0.348  Sum_probs=37.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      -|||.|+|+|.+|..+|..|...|++|+++|.|++.++.+.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~   43 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQ   43 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            36899999999999999999999999999999999987654

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.39  E-value=0.0067  Score=60.97  Aligned_cols=73  Identities=15%  Similarity=0.181  Sum_probs=50.0

Q ss_pred             CCcceEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          145 RRVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      ++|.||+|||+|.||.. .+..+... +.+|+ ++|+++++.+...++                      ++.-...+|+
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~d~   78 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADR----------------------FSVPHAFGSY   78 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHH----------------------HTCSEEESSH
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH----------------------cCCCeeeCCH
Confidence            45789999999999975 45566554 66765 789999987654321                      1111234566


Q ss_pred             cc-c--cCCCEEEEeccCChH
Q 009395          222 ES-F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       222 ~~-~--~~aDlVI~avpe~~~  239 (535)
                      ++ +  .+.|+|+.|+|....
T Consensus        79 ~ell~~~~iDaV~I~tP~~~H   99 (350)
T 4had_A           79 EEMLASDVIDAVYIPLPTSQH   99 (350)
T ss_dssp             HHHHHCSSCSEEEECSCGGGH
T ss_pred             HHHhcCCCCCEEEEeCCCchh
Confidence            55 3  468999999997654

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.39  E-value=0.0014  Score=63.59  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=29.0

Q ss_pred             CCcceEEEEe-CChhhHHHHHHHHhC-CCcEEE-EeCCHH
Q 009395          145 RRVKKVAILG-GGLMGSGIATALILS-NYPVIL-KEVNEK  181 (535)
Q Consensus       145 ~~~~kV~vIG-~G~mG~~iA~~l~~~-G~~V~l-~d~~~~  181 (535)
                      +++.||+|+| +|.||+.++..+... +++++. +|++..
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~   44 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGS   44 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTC
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCc
Confidence            4468999999 799999999988765 677665 688743

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.34  E-value=0.0065  Score=57.29  Aligned_cols=92  Identities=14%  Similarity=0.028  Sum_probs=58.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c-
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y-  221 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~-  221 (535)
                      .++|.|+|+|.+|..++..|...|+ |+++|++++.++.+.            .|.          ..+... ++   + 
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~------------~~~----------~~i~gd~~~~~~l~   65 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR------------SGA----------NFVHGDPTRVSDLE   65 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH------------TTC----------EEEESCTTCHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh------------cCC----------eEEEcCCCCHHHHH
Confidence            3589999999999999999999999 999999998765431            110          001110 11   1 


Q ss_pred             -ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCC-ceeeecCC
Q 009395          222 -ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPH-CILASNTS  263 (535)
Q Consensus       222 -~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~-~ii~s~tS  263 (535)
                       ..+.+||.||.+++++..  ........+.+.++ .|++-..+
T Consensus        66 ~a~i~~ad~vi~~~~~d~~--n~~~~~~a~~~~~~~~iia~~~~  107 (234)
T 2aef_A           66 KANVRGARAVIVDLESDSE--TIHCILGIRKIDESVRIIAEAER  107 (234)
T ss_dssp             HTTCTTCSEEEECCSCHHH--HHHHHHHHHHHCSSSEEEEECSS
T ss_pred             hcCcchhcEEEEcCCCcHH--HHHHHHHHHHHCCCCeEEEEECC
Confidence             126799999999986532  22223333444555 55554333

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.34  E-value=0.0093  Score=60.40  Aligned_cols=69  Identities=19%  Similarity=0.245  Sum_probs=47.2

Q ss_pred             CcceEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          146 RVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      ++.||+|||+|.||.. .+..+... +++|+ ++|+++++++.             ..            ......++++
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~   60 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-------------DL------------PDVTVIASPE   60 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-------------HC------------TTSEEESCHH
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hC------------CCCcEECCHH
Confidence            3468999999999997 66666655 67765 88999876431             01            1123345665


Q ss_pred             c-cc--CCCEEEEeccCChH
Q 009395          223 S-FK--DVDMVIEAIIENVS  239 (535)
Q Consensus       223 ~-~~--~aDlVI~avpe~~~  239 (535)
                      + +.  +.|+|+.|+|....
T Consensus        61 ~ll~~~~~D~V~i~tp~~~H   80 (364)
T 3e82_A           61 AAVQHPDVDLVVIASPNATH   80 (364)
T ss_dssp             HHHTCTTCSEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEeCChHHH
Confidence            4 33  79999999997654

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.29  E-value=0.01  Score=59.94  Aligned_cols=69  Identities=22%  Similarity=0.225  Sum_probs=47.2

Q ss_pred             CcceEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          146 RVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +..||+|||+|.||.. .+..+... +++|+ ++|+++++...             +.            ......++++
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~   58 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-------------DF------------PDAEVVHELE   58 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-------------HC------------TTSEEESSTH
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-------------hC------------CCCceECCHH
Confidence            3468999999999997 66666555 67764 78999865321             01            1223445665


Q ss_pred             c-cc--CCCEEEEeccCChH
Q 009395          223 S-FK--DVDMVIEAIIENVS  239 (535)
Q Consensus       223 ~-~~--~aDlVI~avpe~~~  239 (535)
                      + +.  +.|+|+.|+|....
T Consensus        59 ~ll~~~~vD~V~i~tp~~~H   78 (358)
T 3gdo_A           59 EITNDPAIELVIVTTPSGLH   78 (358)
T ss_dssp             HHHTCTTCCEEEECSCTTTH
T ss_pred             HHhcCCCCCEEEEcCCcHHH
Confidence            4 33  79999999997754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.23  E-value=0.0025  Score=65.13  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=35.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      -++|+|+|+|.+|..++..+...|.+|+++|+++++.+.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~  211 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV  211 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4689999999999999999999999999999998776544

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=96.22  E-value=0.017  Score=60.18  Aligned_cols=77  Identities=16%  Similarity=0.227  Sum_probs=51.6

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc----
Q 009395          146 RVKKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL----  219 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----  219 (535)
                      +..||+|||+|.||...+..+... |++| .++|+++++++...+.+.       +.|.          ......+    
T Consensus        19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~~   81 (444)
T 2ixa_A           19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGND   81 (444)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSSTT
T ss_pred             CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCCC
Confidence            446899999999999999888875 6775 588999998765543211       1111          0012233    


Q ss_pred             Cccc-cc--CCCEEEEeccCChH
Q 009395          220 DYES-FK--DVDMVIEAIIENVS  239 (535)
Q Consensus       220 ~~~~-~~--~aDlVI~avpe~~~  239 (535)
                      ++++ ++  +.|+|++|+|....
T Consensus        82 ~~~~ll~~~~vD~V~i~tp~~~h  104 (444)
T 2ixa_A           82 DYKNMLKDKNIDAVFVSSPWEWH  104 (444)
T ss_dssp             THHHHTTCTTCCEEEECCCGGGH
T ss_pred             CHHHHhcCCCCCEEEEcCCcHHH
Confidence            5544 43  68999999997654

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.21  E-value=0.0027  Score=66.35  Aligned_cols=39  Identities=21%  Similarity=0.175  Sum_probs=35.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEA  185 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~  185 (535)
                      .++|.|+|+|.||..++..|++.|++|+++|+++++++.
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~   41 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK   41 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHH
Confidence            468999999999999999999999999999999887654

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.14  E-value=0.018  Score=57.57  Aligned_cols=71  Identities=15%  Similarity=0.062  Sum_probs=50.4

Q ss_pred             cceEEEEeCC-hhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          147 VKKVAILGGG-LMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       147 ~~kV~vIG~G-~mG~~iA~~l~~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      ..||+|||+| .||...+..+.+.  +++| .++|+++++.+...++                      ++.....++++
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------------------~~~~~~~~~~~   75 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYE   75 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH----------------------hCCCcccCCHH
Confidence            4689999999 8999999988876  4565 5899999987654321                      11112345665


Q ss_pred             c-c--cCCCEEEEeccCChH
Q 009395          223 S-F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       223 ~-~--~~aDlVI~avpe~~~  239 (535)
                      + +  .+.|+|++|+|....
T Consensus        76 ~ll~~~~vD~V~i~tp~~~H   95 (340)
T 1zh8_A           76 ELLESGLVDAVDLTLPVELN   95 (340)
T ss_dssp             HHHHSSCCSEEEECCCGGGH
T ss_pred             HHhcCCCCCEEEEeCCchHH
Confidence            4 3  368999999997643

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.13  E-value=0.016  Score=57.63  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             CcceEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCH
Q 009395          146 RVKKVAILGGGLMGSG-IATALILSNYPVILKEVNE  180 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~-iA~~l~~~G~~V~l~d~~~  180 (535)
                      .++||.|||.|.+|.+ +|..|.+.|++|+++|.++
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4689999999999996 9999999999999999864

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.11  E-value=0.0047  Score=60.35  Aligned_cols=33  Identities=30%  Similarity=0.327  Sum_probs=30.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      .+|.|||+|..|+.++..|+++|. +++++|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            589999999999999999999997 899999875

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.11  E-value=0.017  Score=58.35  Aligned_cols=98  Identities=8%  Similarity=0.109  Sum_probs=59.5

Q ss_pred             cceEEEEeCChhhH-HHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          147 VKKVAILGGGLMGS-GIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~-~iA~~l~~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      ..||+|||+|.+|. .++..+...|++| .++|+++++.+...+.                      ++.....+++++ 
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~~~~~~~~~~~~l   83 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAV----------------------YADARRIATAEEI   83 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHH----------------------SSSCCEESCHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHH----------------------cCCCcccCCHHHH
Confidence            35899999999995 5677777788885 4889999987654321                      111233456654 


Q ss_pred             c--cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHH
Q 009395          224 F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLI  270 (535)
Q Consensus       224 ~--~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l  270 (535)
                      +  .+.|+|+.|+|....  .++.....+  ....+++--.-+.++++.
T Consensus        84 l~~~~vD~V~I~tp~~~H--~~~~~~al~--aGkhVl~EKPla~~~~ea  128 (361)
T 3u3x_A           84 LEDENIGLIVSAAVSSER--AELAIRAMQ--HGKDVLVDKPGMTSFDQL  128 (361)
T ss_dssp             HTCTTCCEEEECCCHHHH--HHHHHHHHH--TTCEEEEESCSCSSHHHH
T ss_pred             hcCCCCCEEEEeCChHHH--HHHHHHHHH--CCCeEEEeCCCCCCHHHH
Confidence            3  358999999986543  233322222  112355544444555543

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.09  E-value=0.016  Score=59.06  Aligned_cols=69  Identities=17%  Similarity=0.091  Sum_probs=49.1

Q ss_pred             ceEEEEeCC-hhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          148 KKVAILGGG-LMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~G-~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      .||+|||+| .||..++..+... +++|+ ++|+++++.+...+.          .|             +...+++++ 
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------~g-------------~~~~~~~~el   59 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKE----------YG-------------IPVFATLAEM   59 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHH----------HT-------------CCEESSHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH----------cC-------------CCeECCHHHH
Confidence            589999999 9999999888775 56655 789999887654321          01             223445554 


Q ss_pred             c--cCCCEEEEeccCChH
Q 009395          224 F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       224 ~--~~aDlVI~avpe~~~  239 (535)
                      +  .++|+|+.|+|....
T Consensus        60 l~~~~vD~V~i~tp~~~H   77 (387)
T 3moi_A           60 MQHVQMDAVYIASPHQFH   77 (387)
T ss_dssp             HHHSCCSEEEECSCGGGH
T ss_pred             HcCCCCCEEEEcCCcHHH
Confidence            3  369999999997654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.07  E-value=0.0047  Score=60.18  Aligned_cols=74  Identities=18%  Similarity=0.261  Sum_probs=53.5

Q ss_pred             ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +++.|||.|. +|.++|..|.+.|.+|+++++....++.                                   .+.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l-----------------------------------~~~~~~  210 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM-----------------------------------IDYLRT  210 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH-----------------------------------HHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh-----------------------------------hhhhcc
Confidence            5899999866 7999999999999999999974332210                                   022578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ||+||.+++...-+.       .+.+++++++++..+
T Consensus       211 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi  240 (300)
T 4a26_A          211 ADIVIAAMGQPGYVK-------GEWIKEGAAVVDVGT  240 (300)
T ss_dssp             CSEEEECSCCTTCBC-------GGGSCTTCEEEECCC
T ss_pred             CCEEEECCCCCCCCc-------HHhcCCCcEEEEEec
Confidence            999999997432222       234688888876554

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.02  E-value=0.018  Score=54.00  Aligned_cols=39  Identities=15%  Similarity=0.090  Sum_probs=35.2

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~  185 (535)
                      -++|.|.|+ |.+|..++..|++.|++|++++|+++.++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~   60 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE   60 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH
Confidence            468999998 999999999999999999999999887654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.02  E-value=0.012  Score=54.55  Aligned_cols=38  Identities=18%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             cceEEEEeC-ChhhHHHHHHHH-hCCCcEEEEeCCHH-HHH
Q 009395          147 VKKVAILGG-GLMGSGIATALI-LSNYPVILKEVNEK-FLE  184 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~-~~G~~V~l~d~~~~-~~~  184 (535)
                      +++|.|.|+ |.+|..++..|+ +.|++|++++|+++ .++
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~   45 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIP   45 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSC
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccch
Confidence            345999995 999999999999 89999999999988 654

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.01  E-value=0.021  Score=57.39  Aligned_cols=68  Identities=16%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             cceEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          147 VKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ..||+|||+|.||.. .+..+... +++|+ ++|+++++.+.             ..            ......+++++
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~~   61 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------DW------------PAIPVVSDPQM   61 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------TC------------SSCCEESCHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------hC------------CCCceECCHHH
Confidence            368999999999997 67777665 67765 88999886531             01            12233456654


Q ss_pred             -c--cCCCEEEEeccCChH
Q 009395          224 -F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       224 -~--~~aDlVI~avpe~~~  239 (535)
                       +  .+.|+|+.|+|....
T Consensus        62 ll~~~~vD~V~i~tp~~~H   80 (352)
T 3kux_A           62 LFNDPSIDLIVIPTPNDTH   80 (352)
T ss_dssp             HHHCSSCCEEEECSCTTTH
T ss_pred             HhcCCCCCEEEEeCChHHH
Confidence             3  359999999997755

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.00  E-value=0.0078  Score=58.37  Aligned_cols=35  Identities=29%  Similarity=0.319  Sum_probs=28.8

Q ss_pred             cceEEEEeC-ChhhHHHHHHHH-hCCCcEE-EEeCCHH
Q 009395          147 VKKVAILGG-GLMGSGIATALI-LSNYPVI-LKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~-~~G~~V~-l~d~~~~  181 (535)
                      .+||+|+|+ |.||..++..+. ..|++|+ ++|++++
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~   42 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS   42 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCch
Confidence            468999998 999999999877 4578876 7888764

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.99  E-value=0.023  Score=58.20  Aligned_cols=74  Identities=19%  Similarity=0.149  Sum_probs=50.7

Q ss_pred             CcceEEEEeCCh---hhHHHHHHHHhCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          146 RVKKVAILGGGL---MGSGIATALILSN-YPVI--LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       146 ~~~kV~vIG~G~---mG~~iA~~l~~~G-~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      +..||+|||+|.   ||...+..+...+ ++|+  ++|+++++.+...++          .|. .         .....+
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g~-~---------~~~~~~   70 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ----------LGV-D---------SERCYA   70 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH----------TTC-C---------GGGBCS
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH----------hCC-C---------cceeeC
Confidence            446899999999   9999988877665 6776  579999987654321          111 0         012345


Q ss_pred             Ccccc--------cCCCEEEEeccCChH
Q 009395          220 DYESF--------KDVDMVIEAIIENVS  239 (535)
Q Consensus       220 ~~~~~--------~~aDlVI~avpe~~~  239 (535)
                      +++++        .+.|+|+.|+|....
T Consensus        71 ~~~~ll~~~~~~~~~vD~V~i~tp~~~H   98 (398)
T 3dty_A           71 DYLSMFEQEARRADGIQAVSIATPNGTH   98 (398)
T ss_dssp             SHHHHHHHHTTCTTCCSEEEEESCGGGH
T ss_pred             CHHHHHhcccccCCCCCEEEECCCcHHH
Confidence            55542        248999999997654

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=95.99  E-value=0.023  Score=58.66  Aligned_cols=156  Identities=13%  Similarity=0.160  Sum_probs=81.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHhh--hcccccccCc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKFEKT--ISLLTGVLDY  221 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~--~~~i~~~~~~  221 (535)
                      .-||+|||+|.||..++..+.+. |.+ |.++|+++++.+...+..   +......... +..+....  .+....++|+
T Consensus        23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~---yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~   99 (446)
T 3upl_A           23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTA---YGDEENAREATTESAMTRAIEAGKIAVTDDN   99 (446)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHH---HSSSTTEEECSSHHHHHHHHHTTCEEEESCH
T ss_pred             ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh---cCCccccccccchhhhhhhhccCCceEECCH
Confidence            35899999999999999887654 555 457899998876554221   0000000000 11111111  1124456677


Q ss_pred             cc-c--cCCCEEEEeccCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHH---HHHhhcCCCCcEEeecccCCCCCCCE
Q 009395          222 ES-F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLN---LIGERTYSKDRIVGAHFFSPAHVMPL  294 (535)
Q Consensus       222 ~~-~--~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~~P~~~~~l  294 (535)
                      ++ +  .+.|+|++|+|.......-....+    ..+. +++.+. .....   +|.+.....    |.          .
T Consensus       100 eeLL~d~dIDaVviaTp~p~~H~e~a~~AL----~AGKHVv~~nk-~l~~~eg~eL~~~A~e~----Gv----------v  160 (446)
T 3upl_A          100 DLILSNPLIDVIIDATGIPEVGAETGIAAI----RNGKHLVMMNV-EADVTIGPYLKAQADKQ----GV----------I  160 (446)
T ss_dssp             HHHHTCTTCCEEEECSCCHHHHHHHHHHHH----HTTCEEEECCH-HHHHHHHHHHHHHHHHH----TC----------C
T ss_pred             HHHhcCCCCCEEEEcCCChHHHHHHHHHHH----HcCCcEEecCc-ccCHHHHHHHHHHHHHh----CC----------e
Confidence            54 3  368999999975322222222223    2333 443332 22222   222222111    11          1


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          295 LEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       295 veiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      +.+..+  -.+.....+.++.+.+|..++.++
T Consensus       161 l~~~~g--dqp~~~~eLv~~a~~~G~~~v~~G  190 (446)
T 3upl_A          161 YSLGAG--DEPSSCMELIEFVSALGYEVVSAG  190 (446)
T ss_dssp             EEECTT--SHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eeecCC--cchHHHHHHHHHHHhCCCeEEEec
Confidence            112222  236667788889999999999987

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.98  E-value=0.0035  Score=60.27  Aligned_cols=72  Identities=17%  Similarity=0.237  Sum_probs=52.7

Q ss_pred             ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +++.|||.| .+|.++|..|...|.+|+++++....++                                     +.+++
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~-------------------------------------~~~~~  193 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG-------------------------------------SMTRS  193 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH-------------------------------------Hhhcc
Confidence            589999987 5899999999999999999986432211                                     23678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ||+||.+++...-++       .+++++++++++..+
T Consensus       194 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi  223 (276)
T 3ngx_A          194 SKIVVVAVGRPGFLN-------REMVTPGSVVIDVGI  223 (276)
T ss_dssp             SSEEEECSSCTTCBC-------GGGCCTTCEEEECCC
T ss_pred             CCEEEECCCCCcccc-------HhhccCCcEEEEecc
Confidence            999999997432222       234688888876554

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.0055  Score=64.16  Aligned_cols=41  Identities=20%  Similarity=0.186  Sum_probs=36.0

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHH
Q 009395          146 RVKKVAILGGGLMGSGIATALILS-NYPVILKEVNEKFLEAG  186 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~-G~~V~l~d~~~~~~~~~  186 (535)
                      +.++|.|+|+|.+|++++..|++. |++|+++||++++++..
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l   63 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL   63 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence            457899999999999999999998 78999999998876543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.84  E-value=0.041  Score=55.46  Aligned_cols=32  Identities=25%  Similarity=0.242  Sum_probs=30.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~  179 (535)
                      .||.|+|+|.+|.++|+.+...|. +|+++|++
T Consensus       193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            589999999999999999999998 89999998

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=95.80  E-value=0.027  Score=56.08  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=30.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~  180 (535)
                      +||.|+|+ |.+|+.++..|+..|+       +|+++|+++
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence            58999997 9999999999999996       899999974

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.80  E-value=0.011  Score=55.16  Aligned_cols=37  Identities=22%  Similarity=0.434  Sum_probs=33.8

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      +++|.|.|+ |.+|+.++..|++.|++|++.+|+++..
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   41 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI   41 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence            578999996 9999999999999999999999997754

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.80  E-value=0.0066  Score=58.14  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=29.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            489999999999999999999998 789998763

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.76  E-value=0.0085  Score=58.33  Aligned_cols=72  Identities=15%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      ++|.|||.|. +|..+|..|...|..|++++....                                      ++ +.++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~--------------------------------------~L~~~~~  207 (301)
T 1a4i_A          166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA--------------------------------------HLDEEVN  207 (301)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------------------------------SHHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcc--------------------------------------cHHHHhc
Confidence            6899999995 799999999999999999985422                                      22 3468


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      +||+||.+++..--++.       +.+++++++++....
T Consensus       208 ~ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          208 KGDILVVATGQPEMVKG-------EWIKPGAIVIDCGIN  239 (301)
T ss_dssp             TCSEEEECCCCTTCBCG-------GGSCTTCEEEECCCB
T ss_pred             cCCEEEECCCCcccCCH-------HHcCCCcEEEEccCC
Confidence            89999999974321222       346788888766553

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.76  E-value=0.0095  Score=60.24  Aligned_cols=69  Identities=12%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             CcceEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          146 RVKKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +..||+|||+|.||.. .+..+... +++|+ ++|++++++..                         ........++++
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------------------~~~~~~~~~~~~   58 (362)
T 3fhl_A            4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------------------RYPQASIVRSFK   58 (362)
T ss_dssp             CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------------------TCTTSEEESCSH
T ss_pred             CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------------------hCCCCceECCHH
Confidence            4568999999999997 66666655 67765 78998765210                         011233445665


Q ss_pred             c-cc--CCCEEEEeccCChH
Q 009395          223 S-FK--DVDMVIEAIIENVS  239 (535)
Q Consensus       223 ~-~~--~aDlVI~avpe~~~  239 (535)
                      + +.  +.|+|+.|+|....
T Consensus        59 ~ll~~~~vD~V~i~tp~~~H   78 (362)
T 3fhl_A           59 ELTEDPEIDLIVVNTPDNTH   78 (362)
T ss_dssp             HHHTCTTCCEEEECSCGGGH
T ss_pred             HHhcCCCCCEEEEeCChHHH
Confidence            4 33  48999999997654

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.75  E-value=0.031  Score=57.65  Aligned_cols=100  Identities=15%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             CcceEEEEeCCh---hhHHHHHHHHhCC-CcEE--EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          146 RVKKVAILGGGL---MGSGIATALILSN-YPVI--LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       146 ~~~kV~vIG~G~---mG~~iA~~l~~~G-~~V~--l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      +..||+|||+|.   ||...+..+...+ ++|+  ++|+++++.+...++          .|. .         .....+
T Consensus        36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~----------~g~-~---------~~~~~~   95 (417)
T 3v5n_A           36 KRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRE----------LGL-D---------PSRVYS   95 (417)
T ss_dssp             CCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHH----------HTC-C---------GGGBCS
T ss_pred             CcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH----------cCC-C---------cccccC
Confidence            345899999999   9999888877765 6765  679999987654321          111 0         002344


Q ss_pred             Cccc-cc-------CCCEEEEeccCChHHHHHHHHHHHhhcCCCc-eeeecCCcCcHHHH
Q 009395          220 DYES-FK-------DVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTIDLNLI  270 (535)
Q Consensus       220 ~~~~-~~-------~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~~~~l  270 (535)
                      ++++ +.       +.|+|+.|+|.....  ++...   .+..+. +++--.-+.++++.
T Consensus        96 ~~~~ll~~~~~~~~~vD~V~I~tp~~~H~--~~~~~---al~aGkhVl~EKPla~~~~ea  150 (417)
T 3v5n_A           96 DFKEMAIREAKLKNGIEAVAIVTPNHVHY--AAAKE---FLKRGIHVICDKPLTSTLADA  150 (417)
T ss_dssp             CHHHHHHHHHHCTTCCSEEEECSCTTSHH--HHHHH---HHTTTCEEEEESSSCSSHHHH
T ss_pred             CHHHHHhcccccCCCCcEEEECCCcHHHH--HHHHH---HHhCCCeEEEECCCcCCHHHH
Confidence            5544 33       489999999977542  33222   233333 55544434555443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.74  E-value=0.023  Score=55.45  Aligned_cols=41  Identities=24%  Similarity=0.187  Sum_probs=36.2

Q ss_pred             ceEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|+| +|.+|.+++..|++.|.+|++++|+.++.+...+
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~  161 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD  161 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence            5799999 8999999999999999999999999887765543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.65  E-value=0.0075  Score=59.52  Aligned_cols=92  Identities=15%  Similarity=0.062  Sum_probs=58.4

Q ss_pred             cceEEEEeCChh-hHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-----c--
Q 009395          147 VKKVAILGGGLM-GSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-----V--  218 (535)
Q Consensus       147 ~~kV~vIG~G~m-G~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-----~--  218 (535)
                      -++|.|||.|.| |..+|..|+..|..|+++|++..++..-             ...+.     .  .....     +  
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~r-------------a~~la-----~--~~~~~t~~~~t~~  236 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTR-------------GESLK-----L--NKHHVEDLGEYSE  236 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEES-------------CCCSS-----C--CCCEEEEEEECCH
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhH-------------HHHHh-----h--hcccccccccccH
Confidence            368999999976 9999999999999999999984332100             00000     0  00011     1  


Q ss_pred             cCc-ccccCCCEEEEeccCChH-HHHHHHHHHHhhcCCCceeeecCCcC
Q 009395          219 LDY-ESFKDVDMVIEAIIENVS-LKQQIFADLEKYCPPHCILASNTSTI  265 (535)
Q Consensus       219 ~~~-~~~~~aDlVI~avpe~~~-~k~~v~~~l~~~~~~~~ii~s~tS~~  265 (535)
                      .++ +.+.+||+||-|++...- +..       +.+++++++++..+.-
T Consensus       237 ~~L~e~l~~ADIVIsAtg~p~~vI~~-------e~vk~GavVIDVgi~r  278 (320)
T 1edz_A          237 DLLKKCSLDSDVVITGVPSENYKFPT-------EYIKEGAVCINFACTK  278 (320)
T ss_dssp             HHHHHHHHHCSEEEECCCCTTCCBCT-------TTSCTTEEEEECSSSC
T ss_pred             hHHHHHhccCCEEEECCCCCcceeCH-------HHcCCCeEEEEcCCCc
Confidence            234 357899999999964311 222       2357788888776654

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.61  E-value=0.0082  Score=58.03  Aligned_cols=72  Identities=21%  Similarity=0.198  Sum_probs=52.8

Q ss_pred             ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +++.|||.|. +|.++|..|...|..|+++++....++                                     +.+++
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~-------------------------------------~~~~~  203 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ  203 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhhc
Confidence            6899999876 699999999999999999986432211                                     23688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ||+||.+++...-++       .+.+++++++++..+
T Consensus       204 ADIVI~Avg~p~~I~-------~~~vk~GavVIDVgi  233 (285)
T 3p2o_A          204 ADLIIVAAGCVNLLR-------SDMVKEGVIVVDVGI  233 (285)
T ss_dssp             CSEEEECSSCTTCBC-------GGGSCTTEEEEECCC
T ss_pred             CCEEEECCCCCCcCC-------HHHcCCCeEEEEecc
Confidence            999999997421122       245688888876554

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.56  E-value=0.0093  Score=57.66  Aligned_cols=72  Identities=11%  Similarity=0.103  Sum_probs=52.3

Q ss_pred             ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +++.|||.|. +|..+|..|...|..|+++++....++                                     +.+++
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  204 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK  204 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------Hhccc
Confidence            5899999876 799999999999999999975422111                                     23688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ||+||.+++...-++       .+.+++++++++..+
T Consensus       205 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi  234 (285)
T 3l07_A          205 ADILIVAVGKPNFIT-------ADMVKEGAVVIDVGI  234 (285)
T ss_dssp             CSEEEECCCCTTCBC-------GGGSCTTCEEEECCC
T ss_pred             CCEEEECCCCCCCCC-------HHHcCCCcEEEEecc
Confidence            999999997421122       235678888776554

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.55  E-value=0.006  Score=59.01  Aligned_cols=72  Identities=14%  Similarity=0.211  Sum_probs=52.5

Q ss_pred             ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|.|||.|. .|..+|..|...|..|++++.....+.                                     +.+++
T Consensus       160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~  202 (288)
T 1b0a_A          160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN  202 (288)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhcc
Confidence            6899999996 599999999999999999985443221                                     23578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ||+||.+++..--++.       +.+++++++++...
T Consensus       203 ADIVI~Avg~p~lI~~-------~~vk~GavVIDVgi  232 (288)
T 1b0a_A          203 ADLLIVAVGKPGFIPG-------DWIKEGAIVIDVGI  232 (288)
T ss_dssp             CSEEEECSCCTTCBCT-------TTSCTTCEEEECCC
T ss_pred             CCEEEECCCCcCcCCH-------HHcCCCcEEEEccC
Confidence            9999999974311221       23578888876554

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.50  E-value=0.03  Score=57.51  Aligned_cols=70  Identities=17%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC---------CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009395          148 KKVAILGGGLMGSGIATALILS---------NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG  217 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~---------G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  217 (535)
                      -||+|||+|.||...+..+.+.         +.+|+ ++|++++++++..++                      ++....
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~----------------------~~~~~~   84 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAK----------------------LGAEKA   84 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHH----------------------HTCSEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHH----------------------cCCCeE
Confidence            4799999999999888877654         34544 789999987665421                      111123


Q ss_pred             ccCccc-c--cCCCEEEEeccCChH
Q 009395          218 VLDYES-F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       218 ~~~~~~-~--~~aDlVI~avpe~~~  239 (535)
                      .+|+++ +  .+.|+|+.|+|....
T Consensus        85 y~d~~~ll~~~~vD~V~I~tp~~~H  109 (412)
T 4gqa_A           85 YGDWRELVNDPQVDVVDITSPNHLH  109 (412)
T ss_dssp             ESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             ECCHHHHhcCCCCCEEEECCCcHHH
Confidence            456654 3  468999999997654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.45  E-value=0.017  Score=54.39  Aligned_cols=41  Identities=12%  Similarity=0.177  Sum_probs=35.5

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      .++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~   44 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQE   44 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            356778877 89999999999999999999999998876554

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.43  E-value=0.0078  Score=56.71  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=34.2

Q ss_pred             CCCcceEEEEeC-ChhhHHHHHHHHhCC-CcEEEEeCCHHHH
Q 009395          144 PRRVKKVAILGG-GLMGSGIATALILSN-YPVILKEVNEKFL  183 (535)
Q Consensus       144 ~~~~~kV~vIG~-G~mG~~iA~~l~~~G-~~V~l~d~~~~~~  183 (535)
                      ++.+++|.|.|+ |.+|..++..|++.| ++|++++|+++.+
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~   61 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI   61 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence            345788999995 999999999999999 8999999998754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.42  E-value=0.061  Score=49.66  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=32.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      +||.|.|+ |.+|..++..|++.|++|++++|+++..
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~   37 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV   37 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence            37999995 9999999999999999999999998754

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.36  E-value=0.019  Score=55.90  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      |||.|.|+ |.+|+.++..|.++||+|++..|+++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            57999998 99999999999999999999998754

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=95.32  E-value=0.04  Score=51.58  Aligned_cols=43  Identities=28%  Similarity=0.274  Sum_probs=36.4

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      .++|.|.|+ |.+|..+|..|++.|++|++.+++.+.++...+.
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   45 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHE   45 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            356778876 8899999999999999999999999887765543

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.30  E-value=0.011  Score=57.19  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=51.9

Q ss_pred             ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +++.|||.|. +|.++|..|...|..|+++++....++                                     +.+++
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~-------------------------------------~~~~~  204 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA-------------------------------------DHVSR  204 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHT
T ss_pred             CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH-------------------------------------HHhcc
Confidence            5899999865 899999999999999999875322111                                     23678


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ||+||.+++...-++       .+.+++++++++..+
T Consensus       205 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi  234 (286)
T 4a5o_A          205 ADLVVVAAGKPGLVK-------GEWIKEGAIVIDVGI  234 (286)
T ss_dssp             CSEEEECCCCTTCBC-------GGGSCTTCEEEECCS
T ss_pred             CCEEEECCCCCCCCC-------HHHcCCCeEEEEecc
Confidence            999999997421122       235678888776544

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=95.28  E-value=0.01  Score=57.25  Aligned_cols=72  Identities=19%  Similarity=0.242  Sum_probs=52.2

Q ss_pred             ceEEEEeCChh-hHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          148 KKVAILGGGLM-GSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       148 ~kV~vIG~G~m-G~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      +++.|||.|.| |..+|..|...  |..|++++++...+.                                     +.+
T Consensus       159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~-------------------------------------~~~  201 (281)
T 2c2x_A          159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP-------------------------------------ALT  201 (281)
T ss_dssp             CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH-------------------------------------HHH
T ss_pred             CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH-------------------------------------HHH
Confidence            68999999976 99999999999  889999875432211                                     336


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ++||+||.|++..--++.       +.+++++++++...
T Consensus       202 ~~ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi  233 (281)
T 2c2x_A          202 RQADIVVAAVGVAHLLTA-------DMVRPGAAVIDVGV  233 (281)
T ss_dssp             TTCSEEEECSCCTTCBCG-------GGSCTTCEEEECCE
T ss_pred             hhCCEEEECCCCCcccCH-------HHcCCCcEEEEccC
Confidence            889999999963311222       23577887776544

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=95.23  E-value=0.052  Score=54.97  Aligned_cols=69  Identities=25%  Similarity=0.326  Sum_probs=44.7

Q ss_pred             eEEEEeCChhhHHHHHHHHh--------CCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          149 KVAILGGGLMGSGIATALIL--------SNYP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~--------~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      ||+|||+|.||..-+..+..        .+.+ |.++|+++++++...++                      ++.-...+
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~----------------------~g~~~~y~   84 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGE----------------------FGFEKATA   84 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHH----------------------HTCSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHH----------------------hCCCeecC
Confidence            79999999999877665533        2445 45789999887654321                      11112345


Q ss_pred             Cccc-c--cCCCEEEEeccCChH
Q 009395          220 DYES-F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       220 ~~~~-~--~~aDlVI~avpe~~~  239 (535)
                      |+++ +  .+.|+|+.|+|....
T Consensus        85 d~~ell~~~~iDaV~IatP~~~H  107 (393)
T 4fb5_A           85 DWRALIADPEVDVVSVTTPNQFH  107 (393)
T ss_dssp             CHHHHHHCTTCCEEEECSCGGGH
T ss_pred             CHHHHhcCCCCcEEEECCChHHH
Confidence            6654 3  468999999997655

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=95.21  E-value=0.045  Score=52.00  Aligned_cols=32  Identities=19%  Similarity=0.405  Sum_probs=26.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCC
Q 009395          148 KKVAILGG-GLMGSGIATALILS-NYPVI-LKEVN  179 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~  179 (535)
                      +||+|+|+ |.||+.++..+... |++|+ ++|++
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~   35 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG   35 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC
Confidence            37999997 99999999988765 89876 56654

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=95.20  E-value=0.069  Score=50.75  Aligned_cols=75  Identities=16%  Similarity=0.064  Sum_probs=49.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (535)
                      -++|++||+|.||..++..  . ++++ .+|+   ++.                 +.+          .+..++|+++ +
T Consensus        12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~-----------------gel----------gv~a~~d~d~ll   58 (253)
T 1j5p_A           12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RIS-----------------KDI----------PGVVRLDEFQVP   58 (253)
T ss_dssp             CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSC-----------------CCC----------SSSEECSSCCCC
T ss_pred             cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---ccc-----------------ccc----------CceeeCCHHHHh
Confidence            3689999999999999998  5 8886 4666   221                 111          2234566765 4


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      .++|+|+||.+.  +   .+-+.+.+.+..+.=++
T Consensus        59 a~pD~VVe~A~~--~---av~e~~~~iL~aG~dvv   88 (253)
T 1j5p_A           59 SDVSTVVECASP--E---AVKEYSLQILKNPVNYI   88 (253)
T ss_dssp             TTCCEEEECSCH--H---HHHHHHHHHTTSSSEEE
T ss_pred             hCCCEEEECCCH--H---HHHHHHHHHHHCCCCEE
Confidence            789999999852  2   22223566677766333

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.18  E-value=0.037  Score=58.15  Aligned_cols=74  Identities=20%  Similarity=0.160  Sum_probs=51.1

Q ss_pred             CcceEEEEeC----ChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc
Q 009395          146 RVKKVAILGG----GLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV  218 (535)
Q Consensus       146 ~~~kV~vIG~----G~mG~~iA~~l~~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~  218 (535)
                      +..||+|||+    |.||...+..+...  +++| .++|+++++.+...+.          .|.          ......
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~----------~g~----------~~~~~~   97 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQL----------KHATGF   97 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TTC----------TTCEEE
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC----------Ccceee
Confidence            3468999999    99999999998875  6775 4899999887654321          111          011234


Q ss_pred             cCccc-c--cCCCEEEEeccCChH
Q 009395          219 LDYES-F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       219 ~~~~~-~--~~aDlVI~avpe~~~  239 (535)
                      +++++ +  .++|+|++|+|....
T Consensus        98 ~d~~ell~~~~vD~V~I~tp~~~H  121 (479)
T 2nvw_A           98 DSLESFAQYKDIDMIVVSVKVPEH  121 (479)
T ss_dssp             SCHHHHHHCTTCSEEEECSCHHHH
T ss_pred             CCHHHHhcCCCCCEEEEcCCcHHH
Confidence            55654 3  379999999996543

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=95.18  E-value=0.04  Score=58.16  Aligned_cols=37  Identities=30%  Similarity=0.478  Sum_probs=32.2

Q ss_pred             CCcceEEEEeCChhhHH-HHHHHHhCCCcEEEEeCCHH
Q 009395          145 RRVKKVAILGGGLMGSG-IATALILSNYPVILKEVNEK  181 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~-iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ..+++|.|||.|..|.+ +|..|.+.|++|+++|.++.
T Consensus        20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            45789999999999996 99999999999999998754

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.16  E-value=0.013  Score=56.99  Aligned_cols=100  Identities=13%  Similarity=0.067  Sum_probs=54.5

Q ss_pred             cceEEEEe-CChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          147 VKKVAILG-GGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       147 ~~kV~vIG-~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      +.||+|+| +|.||+.++..+... +++++ ++|++..... .. .+.    ..  .|.-        ...+..++++++
T Consensus        21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~-G~-d~g----el--~G~~--------~~gv~v~~dl~~   84 (288)
T 3ijp_A           21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFV-DK-DAS----IL--IGSD--------FLGVRITDDPES   84 (288)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTT-TS-BGG----GG--TTCS--------CCSCBCBSCHHH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-cc-chH----Hh--hccC--------cCCceeeCCHHH
Confidence            35899999 899999999988754 67755 5688643210 00 000    00  0000        012334556654


Q ss_pred             -ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       224 -~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                       +.++|+||++.+.  +   ..+..+...+..+.-+++.|++++.
T Consensus        85 ll~~aDVvIDFT~p--~---a~~~~~~~~l~~Gv~vViGTTG~~~  124 (288)
T 3ijp_A           85 AFSNTEGILDFSQP--Q---ASVLYANYAAQKSLIHIIGTTGFSK  124 (288)
T ss_dssp             HTTSCSEEEECSCH--H---HHHHHHHHHHHHTCEEEECCCCCCH
T ss_pred             HhcCCCEEEEcCCH--H---HHHHHHHHHHHcCCCEEEECCCCCH
Confidence             6789999988753  2   2233333333344444444555543

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=95.14  E-value=0.017  Score=57.99  Aligned_cols=69  Identities=16%  Similarity=0.122  Sum_probs=44.5

Q ss_pred             ceEEEEeCChhhHHH-HHHH-Hh-CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGGGLMGSGI-ATAL-IL-SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~i-A~~l-~~-~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      .||+|||+|.||..+ +..+ .. .+++|+ ++|+++++.+...                       ....+...+++++
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-----------------------~~~~~~~~~~~~~   59 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAP-----------------------IYSHIHFTSDLDE   59 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSG-----------------------GGTTCEEESCTHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHH-----------------------hcCCCceECCHHH
Confidence            589999999999864 4413 32 367776 8999877542110                       0112334456654


Q ss_pred             -cc--CCCEEEEeccCChH
Q 009395          224 -FK--DVDMVIEAIIENVS  239 (535)
Q Consensus       224 -~~--~aDlVI~avpe~~~  239 (535)
                       +.  ++|+|+.|+|....
T Consensus        60 ll~~~~~D~V~i~tp~~~h   78 (345)
T 3f4l_A           60 VLNDPDVKLVVVCTHADSH   78 (345)
T ss_dssp             HHTCTTEEEEEECSCGGGH
T ss_pred             HhcCCCCCEEEEcCChHHH
Confidence             33  48999999997654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.14  E-value=0.016  Score=54.28  Aligned_cols=32  Identities=31%  Similarity=0.421  Sum_probs=30.1

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      .|+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            49999999999999999999999999999764

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.12  E-value=0.11  Score=51.83  Aligned_cols=107  Identities=17%  Similarity=0.158  Sum_probs=57.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCC-CHHHH-HhhhcccccccCc-c
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKM-TQEKF-EKTISLLTGVLDY-E  222 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~-~~~~~~i~~~~~~-~  222 (535)
                      .||+|+|+|.+|..+++.+..+ +++|+ +.|.+++......+.     +...-.|.+ ..... .-.-+.+....+. +
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~-----dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~   77 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVE-----KGYKLFVAIPDNERVKLFEDAGIPVEGTILD   77 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHH-----TTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh-----cCCccccccCCCceeecccCCeEEECCchHH
Confidence            5899999999999999998876 57765 456665544332211     000001221 11111 0001122222223 2


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      .+.++|+|++|.|.....  +...  ..++..++.++++.+
T Consensus        78 ~~~~vDiV~eatg~~~s~--~~a~--~~~l~aG~~VI~sap  114 (343)
T 2yyy_A           78 IIEDADIVVDGAPKKIGK--QNLE--NIYKPHKVKAILQGG  114 (343)
T ss_dssp             TGGGCSEEEECCCTTHHH--HHHH--HTTTTTTCEEEECTT
T ss_pred             hccCCCEEEECCCccccH--HHHH--HHHHHCCCEEEECCC
Confidence            346899999999865321  1111  356666776655444

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.10  E-value=0.031  Score=58.06  Aligned_cols=73  Identities=22%  Similarity=0.142  Sum_probs=50.6

Q ss_pred             cceEEEEeC----ChhhHHHHHHHHhC--CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          147 VKKVAILGG----GLMGSGIATALILS--NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       147 ~~kV~vIG~----G~mG~~iA~~l~~~--G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      ..||+|||+    |.||...+..+.+.  +++| .++|+++++.+...+.          .|.          ..+...+
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~----------~g~----------~~~~~~~   79 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQR----------LKL----------SNATAFP   79 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----------TTC----------TTCEEES
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHH----------cCC----------CcceeeC
Confidence            468999999    99999999999876  6775 5899999886654321          111          0112345


Q ss_pred             Cccc-c--cCCCEEEEeccCChH
Q 009395          220 DYES-F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       220 ~~~~-~--~~aDlVI~avpe~~~  239 (535)
                      ++++ +  .++|+|++|+|....
T Consensus        80 ~~~~ll~~~~vD~V~i~tp~~~H  102 (438)
T 3btv_A           80 TLESFASSSTIDMIVIAIQVASH  102 (438)
T ss_dssp             SHHHHHHCSSCSEEEECSCHHHH
T ss_pred             CHHHHhcCCCCCEEEEeCCcHHH
Confidence            5654 3  369999999996543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=95.08  E-value=0.046  Score=51.97  Aligned_cols=42  Identities=21%  Similarity=0.185  Sum_probs=35.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus        13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   55 (252)
T 3f1l_A           13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASH   55 (252)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            46777776 8999999999999999999999999887765543

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=95.07  E-value=0.041  Score=52.62  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=35.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (263)
T 3ai3_A            8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAAR   49 (263)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            46777776 899999999999999999999999887765543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=95.00  E-value=0.013  Score=59.55  Aligned_cols=34  Identities=29%  Similarity=0.408  Sum_probs=31.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      +||+|||+|.-|..+|..|+++|++|+++|++++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5899999999999999999999999999998643

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=94.99  E-value=0.044  Score=55.65  Aligned_cols=72  Identities=19%  Similarity=0.169  Sum_probs=47.6

Q ss_pred             CcceEEEEe-CChhhHH-HH----HHHHhCC-CcE----------EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 009395          146 RVKKVAILG-GGLMGSG-IA----TALILSN-YPV----------ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF  208 (535)
Q Consensus       146 ~~~kV~vIG-~G~mG~~-iA----~~l~~~G-~~V----------~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~  208 (535)
                      +..||+||| +|.||.. .+    ..+.+.+ ..+          .++|+++++.+...+.          .|       
T Consensus         5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~----------~~-------   67 (383)
T 3oqb_A            5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKR----------FN-------   67 (383)
T ss_dssp             EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHH----------TT-------
T ss_pred             ceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHH----------hC-------
Confidence            346899999 9999998 66    6665554 232          4999999887654321          11       


Q ss_pred             HhhhcccccccCccc-c--cCCCEEEEeccCChH
Q 009395          209 EKTISLLTGVLDYES-F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       209 ~~~~~~i~~~~~~~~-~--~~aDlVI~avpe~~~  239 (535)
                           .....+++++ +  .+.|+|+.|+|....
T Consensus        68 -----~~~~~~~~~~ll~~~~iD~V~i~tp~~~h   96 (383)
T 3oqb_A           68 -----IARWTTDLDAALADKNDTMFFDAATTQAR   96 (383)
T ss_dssp             -----CCCEESCHHHHHHCSSCCEEEECSCSSSS
T ss_pred             -----CCcccCCHHHHhcCCCCCEEEECCCchHH
Confidence                 1123456654 3  458999999997654

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.99  E-value=0.034  Score=55.93  Aligned_cols=33  Identities=33%  Similarity=0.504  Sum_probs=30.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      .+|.|||+|..|+.+|..|+.+|. +++++|.+.
T Consensus       119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            589999999999999999999998 799999863

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=94.99  E-value=0.047  Score=54.43  Aligned_cols=148  Identities=14%  Similarity=0.158  Sum_probs=74.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEEEE-eC--CHHHHHHHHHHHHHHHHHHHHcCCCC-HH-H--HHhhh----ccc
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVILK-EV--NEKFLEAGIGRVRANLQSRVKKGKMT-QE-K--FEKTI----SLL  215 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~l~-d~--~~~~~~~~~~~i~~~~~~~~~~g~~~-~~-~--~~~~~----~~i  215 (535)
                      .||+|+|+|.||+.+++.+..+ +++|+.+ |.  +.+......+     ++.  ..|.+. .. +  ....+    ..+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~-----yds--~~g~~~~~~v~~~~~~~l~~~g~~i   76 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFK-----YDT--VHGQWKHSDIKIKDSKTLLLGEKPV   76 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHH-----CCT--TTCCCCSSCEEESSSSEEEETTEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhc-----ccc--cCCCCCCCcEEeecCCeeEECCeEE
Confidence            4899999999999999998876 5676654 42  4444333211     011  112211 00 0  00000    011


Q ss_pred             ccc--cCcccc----cCCCEEEEeccCChHHHHHHHHHHHhhcCCCc--eeeecCCcCcHHHHHhhcCCCCcEEeecccC
Q 009395          216 TGV--LDYESF----KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC--ILASNTSTIDLNLIGERTYSKDRIVGAHFFS  287 (535)
Q Consensus       216 ~~~--~~~~~~----~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~--ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~  287 (535)
                      ...  .+.+.+    .++|+||+|.|....  .+..   ..++..++  +|+|..+. .         .|.-+-|   .|
T Consensus        77 ~v~~~~dp~~l~w~~~~vDvV~eaTg~~~~--~e~a---~~~l~aGak~VVIs~pa~-d---------~p~~V~g---vN  138 (337)
T 3e5r_O           77 TVFGIRNPDEIPWAEAGAEYVVESTGVFTD--KEKA---AAHLKGGAKKVVISAPSK-D---------APMFVCG---VN  138 (337)
T ss_dssp             EEECCSCGGGCCHHHHTCSEEEECSSSCCS--HHHH---THHHHTTCSEEEESSCCS-S---------SCBCCTT---TT
T ss_pred             EEEecCChHHccccccCCCEEEECCCchhh--HHHH---HHHHHcCCCEEEEecCCC-C---------CCEEEec---cC
Confidence            111  144444    489999999986543  2322   33344455  78777652 1         1211112   12


Q ss_pred             CCCCCCEEEEEeCCCCCHHHHHH-HHHHHHhcCC
Q 009395          288 PAHVMPLLEIVRTNQTSPQVIVD-LLDIGKKIKK  320 (535)
Q Consensus       288 P~~~~~lveiv~~~~ts~e~~~~-~~~l~~~lGk  320 (535)
                      +-...+-..++.++.+....+.. +..+.+..|-
T Consensus       139 ~~~~~~~~~iIsnpsCtt~~la~~lkpL~~~~gI  172 (337)
T 3e5r_O          139 EDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGI  172 (337)
T ss_dssp             GGGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCE
T ss_pred             HHHhCCCCcEEECCChHHHHHHHHHHHHHHhcCc
Confidence            21111112377777777666544 4445556664

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=94.95  E-value=0.026  Score=54.00  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=35.7

Q ss_pred             eEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       149 kV~vI--G~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      |++||  |++-+|.++|..|++.|.+|++.|++++.+++..+.+
T Consensus        10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l   53 (255)
T 4g81_D           10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTL   53 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            67777  5588999999999999999999999999887765443

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=94.93  E-value=0.17  Score=49.33  Aligned_cols=96  Identities=14%  Similarity=0.196  Sum_probs=61.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCcccc-
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYESF-  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-  224 (535)
                      -.+|..||+|..|.+........|.+|+.+|++++.++.+++.+.+       .|.          .++++. .|...+ 
T Consensus       123 g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~-------~gl----------~~v~~v~gDa~~l~  185 (298)
T 3fpf_A          123 GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG-------LGV----------DGVNVITGDETVID  185 (298)
T ss_dssp             TCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHH-------HTC----------CSEEEEESCGGGGG
T ss_pred             cCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHh-------cCC----------CCeEEEECchhhCC
Confidence            4689999999866443222223588999999999999988754332       111          122221 122112 


Q ss_pred             -cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeec
Q 009395          225 -KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (535)
Q Consensus       225 -~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~  261 (535)
                       ...|+|+.+..  ..-+..+++++...++|+..++..
T Consensus       186 d~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~  221 (298)
T 3fpf_A          186 GLEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYR  221 (298)
T ss_dssp             GCCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CCCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEE
Confidence             46799997653  223568899999999988766543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=94.88  E-value=0.035  Score=54.82  Aligned_cols=36  Identities=11%  Similarity=0.080  Sum_probs=30.5

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcE-EEEeCCHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPV-ILKEVNEKF  182 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V-~l~d~~~~~  182 (535)
                      +.||+|||+ |.||...+..+...+.++ .++|+++++
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNV   40 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            579999999 789999999999888764 578998765

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=94.82  E-value=0.031  Score=52.97  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=34.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus        12 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   52 (254)
T 2wsb_A           12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAA   52 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            56778876 99999999999999999999999988765543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=94.82  E-value=0.039  Score=53.49  Aligned_cols=42  Identities=31%  Similarity=0.517  Sum_probs=34.7

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus        34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   76 (281)
T 4dry_A           34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGE   76 (281)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            34556665 8999999999999999999999999887765543

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=94.81  E-value=0.036  Score=54.95  Aligned_cols=36  Identities=19%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCc-EEEEeCCHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYP-VILKEVNEKF  182 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~-V~l~d~~~~~  182 (535)
                      +.||+|||+ |.||...+..+...|.+ |.++|+++++
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~   40 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSV   40 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence            579999999 78999999999888876 4578988764

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.80  E-value=0.053  Score=51.72  Aligned_cols=41  Identities=24%  Similarity=0.225  Sum_probs=34.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (260)
T 2z1n_A            8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAAS   49 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46777776 899999999999999999999999887765443

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=94.79  E-value=0.019  Score=57.24  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=58.8

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhC-CCcEEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc--
Q 009395          147 VKKVAILGG-GLMGSGIATALILS-NYPVILKEVNE---KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL--  219 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~-G~~V~l~d~~~---~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~--  219 (535)
                      |.||+|+|+ |.+|..+...|..+ .+++..+..+.   ..-+..    ...+...  .|.          ..+....  
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~----~~~~p~~--~~~----------~~~~v~~~~   67 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI----SDLHPQL--KGI----------VELPLQPMS   67 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH----HHHCGGG--TTT----------CCCBEEEES
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch----HHhCccc--cCc----------cceeEeccC
Confidence            679999995 99999999998874 56777665433   210000    0000000  010          0122221  


Q ss_pred             Ccccc-cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          220 DYESF-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       220 ~~~~~-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      +.+.+ .++|+||+|+|..  .-+++..++   +..++.++++++...+
T Consensus        68 ~~~~~~~~~Dvvf~a~p~~--~s~~~~~~~---~~~g~~vIDlSa~fR~  111 (337)
T 3dr3_A           68 DISEFSPGVDVVFLATAHE--VSHDLAPQF---LEAGCVVFDLSGAFRV  111 (337)
T ss_dssp             SGGGTCTTCSEEEECSCHH--HHHHHHHHH---HHTTCEEEECSSTTSS
T ss_pred             CHHHHhcCCCEEEECCChH--HHHHHHHHH---HHCCCEEEEcCCcccc
Confidence            34455 8999999999854  223444443   3467888898887643

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=94.79  E-value=0.013  Score=54.49  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=25.6

Q ss_pred             ceEEEEeCChhhHHHHHH--HHhCCCcEE-EEeCCHHHH
Q 009395          148 KKVAILGGGLMGSGIATA--LILSNYPVI-LKEVNEKFL  183 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~--l~~~G~~V~-l~d~~~~~~  183 (535)
                      .+|+|||+|.+|..++..  +...|++++ ++|.+++..
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~  124 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKI  124 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTT
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHH
Confidence            579999999999999994  445578655 789998764

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=94.76  E-value=0.053  Score=52.09  Aligned_cols=41  Identities=22%  Similarity=0.274  Sum_probs=34.7

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        22 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   63 (267)
T 1vl8_A           22 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQ   63 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46777776 899999999999999999999999887765443

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.76  E-value=0.055  Score=56.34  Aligned_cols=34  Identities=26%  Similarity=0.196  Sum_probs=31.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      -+||.|||.|..|.+.|..|.+.|++|+++|.++
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4789999999999999999999999999999965

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=94.73  E-value=0.095  Score=44.00  Aligned_cols=93  Identities=16%  Similarity=0.033  Sum_probs=61.1

Q ss_pred             cceEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          147 VKKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       147 ~~kV~vIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      .++|+|||+    +..|..+...|.+.||+|+.++...+.+.                             ...+..+++
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~-----------------------------G~~~y~sl~   54 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVL-----------------------------GKTIINERP   54 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEET-----------------------------TEECBCSCC
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCC-----------------------------CeeccCChH
Confidence            468999998    56899999999999999999887533221                             123345666


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhh
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGER  273 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~  273 (535)
                      ++.+.|+++.++|.  +...++++++.+.-. ..++.  +++..-.++.+.
T Consensus        55 dlp~vDlavi~~p~--~~v~~~v~e~~~~g~-k~v~~--~~G~~~~e~~~~  100 (122)
T 3ff4_A           55 VIEGVDTVTLYINP--QNQLSEYNYILSLKP-KRVIF--NPGTENEELEEI  100 (122)
T ss_dssp             CCTTCCEEEECSCH--HHHGGGHHHHHHHCC-SEEEE--CTTCCCHHHHHH
T ss_pred             HCCCCCEEEEEeCH--HHHHHHHHHHHhcCC-CEEEE--CCCCChHHHHHH
Confidence            66559999999984  445566777655432 34543  334333344433

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=94.73  E-value=0.035  Score=52.82  Aligned_cols=42  Identities=26%  Similarity=0.269  Sum_probs=35.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      +++.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus         8 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   50 (250)
T 3nyw_A            8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDE   50 (250)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45667776 8999999999999999999999999887766543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.70  E-value=0.039  Score=53.26  Aligned_cols=40  Identities=20%  Similarity=0.230  Sum_probs=34.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus        33 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~   73 (279)
T 1xg5_A           33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELA   73 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHH
Confidence            56778876 99999999999999999999999988766543

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.66  E-value=0.037  Score=55.13  Aligned_cols=189  Identities=16%  Similarity=0.130  Sum_probs=94.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC---------CcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSN---------YPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG  217 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G---------~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  217 (535)
                      .||+|||+|.||+.++..+.+..         ++| .++|++.++.                ++ +.         ....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~----------------~~-~~---------~~~~   57 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP----------------RA-IP---------QELL   57 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC----------------CS-SC---------GGGE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh----------------hc-cC---------cccc
Confidence            58999999999999999887763         454 4678875431                11 11         1123


Q ss_pred             ccCcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcC--cHHHHHhhcCCCCcEEeecccCCCCCCCEE
Q 009395          218 VLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTI--DLNLIGERTYSKDRIVGAHFFSPAHVMPLL  295 (535)
Q Consensus       218 ~~~~~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~--~~~~l~~~~~~~~r~ig~h~~~P~~~~~lv  295 (535)
                      ++|++++-+.|+|++|+|.......-+.+-+..   ...+++.|-..+  ...+|.+.....    ... |... .+   
T Consensus        58 ~~d~~~ll~iDvVve~t~~~~~a~~~~~~AL~a---GKhVVtaNkkpla~~~~eL~~~A~~~----~~~-~Ea~-vg---  125 (332)
T 2ejw_A           58 RAEPFDLLEADLVVEAMGGVEAPLRLVLPALEA---GIPLITANKALLAEAWESLRPFAEEG----LIY-HEAS-VM---  125 (332)
T ss_dssp             ESSCCCCTTCSEEEECCCCSHHHHHHHHHHHHT---TCCEEECCHHHHHHSHHHHHHHHHTT----CEE-CGGG-TT---
T ss_pred             cCCHHHHhCCCEEEECCCCcHHHHHHHHHHHHc---CCeEEECCchhHHHHHHHHHHHHHhC----CeE-EEEE-cc---
Confidence            556655339999999998653222222222322   223454443211  122343333221    222 2211 11   


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCC-ChhHHHHH
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGM-PMGPFRLA  374 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~g~G~-p~GPf~~~  374 (535)
                           ... | .++.++ .+.  |.....+.   | +.|-    ..|..+.-.++|.+++++-.-....|| +.+|  ..
T Consensus       126 -----~gi-P-ii~~l~-~l~--~~~I~~I~---g-I~nG----T~nyil~~m~~g~~f~~~l~eAq~~GyaE~dP--~~  185 (332)
T 2ejw_A          126 -----AGT-P-ALSFLE-TLR--GSELLELH---G-ILNG----TTLYILQEMEKGRTYAEALLEAQRLGYAEADP--TL  185 (332)
T ss_dssp             -----TTS-S-SHHHHH-HHT--TSEEEEEE---E-ECCH----HHHHHHHHHHTTCCHHHHHHHHHHTTSSCSSC--HH
T ss_pred             -----cCC-H-HHHHHH-Hhc--CCCcceEE---E-EEec----ccccccCccccCCCHHHHHHHHHHCCCCCCCC--cc
Confidence                 001 1 234444 222  11221111   1 2222    223333333478888877665555676 3566  88


Q ss_pred             HHhchHHHHHHHHHHHHh-CCC
Q 009395          375 DLVGFGVAIATGMQFIEN-FPE  395 (535)
Q Consensus       375 D~~Gld~~~~~~~~l~~~-~~~  395 (535)
                      |.-|.|...++. -|... +|-
T Consensus       186 Dv~G~d~a~Kl~-iLa~~~~G~  206 (332)
T 2ejw_A          186 DVEGIDAAHKLT-LLARLLVDP  206 (332)
T ss_dssp             HHTTHHHHHHHH-HHHHHHTCT
T ss_pred             ccCchhHHHHHH-HHHHHHhCC
Confidence            999999876643 33343 553

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.64  E-value=0.17  Score=49.81  Aligned_cols=40  Identities=20%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      -++|.|.|+ |.+|+.++..|++.|++|++.+++.+..+..
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   51 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHH
Confidence            468999988 9999999999999999999999998765443

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=94.61  E-value=0.11  Score=52.03  Aligned_cols=151  Identities=11%  Similarity=0.102  Sum_probs=75.5

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhC-CCcEEEEeC---CHHHHHHHHHHHHHHHHHHHHcCCCCHHH-H-Hhhh----ccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILS-NYPVILKEV---NEKFLEAGIGRVRANLQSRVKKGKMTQEK-F-EKTI----SLL  215 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~-G~~V~l~d~---~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~-~~~~----~~i  215 (535)
                      .+.||+|+|+|.+|+-+.+.+..+ .++|+.++-   +.+.+....       ...--.|.+...- . ...+    ..+
T Consensus        16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll-------~~ds~hg~~~~~v~~~~~~l~v~g~~i   88 (354)
T 3cps_A           16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLL-------KYDSVHGNFNGTVEVSGKDLCINGKVV   88 (354)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHH-------HCCTTTCSCSSCEEECC-CEEETTEEE
T ss_pred             cceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhh-------cccccCCCCCCcEEEeCCEEEECCeEE
Confidence            356999999999999999998877 577776542   333222211       0000112221000 0 0000    012


Q ss_pred             ccc--cCcccc----cCCCEEEEeccCChHHHHHHHHHHHhhcCCCc--eeeecCCcCcHHHHHhhcCCCCcEEeecccC
Q 009395          216 TGV--LDYESF----KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC--ILASNTSTIDLNLIGERTYSKDRIVGAHFFS  287 (535)
Q Consensus       216 ~~~--~~~~~~----~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~--ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~  287 (535)
                      ...  .+.+.+    .++|+||+|.|-...  .   +....++..++  +|+|+++.-         ..|.-+.|   .|
T Consensus        89 ~v~~~~dp~~i~w~~~~vDvV~eatg~~~s--~---e~a~~~l~~GakkvVId~padd---------~~p~~V~G---VN  151 (354)
T 3cps_A           89 KVFQAKDPAEIPWGASGAQIVCESTGVFTT--E---EKASLHLKGGAKKVIISAPPKD---------NVPMYVMG---VN  151 (354)
T ss_dssp             EEECCSCGGGCCHHHHTCCEEEECSSSCCS--H---HHHGGGGTTTCSEEEESSCCSS---------CCCBCCTT---TT
T ss_pred             EEEecCChHHCCcccCCCCEEEECCCchhh--H---HHHHHHHHcCCcEEEEeCCCCC---------CCCEEEec---cC
Confidence            111  133333    579999999986543  1   23345666777  888877631         01111112   12


Q ss_pred             CCCCCCE-EEEEeCCCCCHHHHHH-HHHHHHhcCC
Q 009395          288 PAHVMPL-LEIVRTNQTSPQVIVD-LLDIGKKIKK  320 (535)
Q Consensus       288 P~~~~~l-veiv~~~~ts~e~~~~-~~~l~~~lGk  320 (535)
                      +-...+- ..++.++.+....+.. +..+.+..|-
T Consensus       152 ~~~~~~~~~~IISNpsCtTn~lap~lkpL~~~~gI  186 (354)
T 3cps_A          152 NTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGI  186 (354)
T ss_dssp             GGGCCTTTCSEEECCCHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHhCcCCCcEEECCCcHHHHHHHHHHHHHHhCCe
Confidence            2111111 2367777777666544 4445556664

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=94.61  E-value=0.031  Score=53.49  Aligned_cols=39  Identities=21%  Similarity=0.259  Sum_probs=33.8

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++..+..
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   47 (260)
T 1nff_A            8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAM   47 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46778876 8999999999999999999999998876543

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=94.61  E-value=0.15  Score=48.36  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~  185 (535)
                      +|.|-|+ +-+|.+||..|++.|.+|++.|++++.++.
T Consensus         4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~   41 (247)
T 3ged_A            4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSAD   41 (247)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3455565 889999999999999999999999887654

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.60  E-value=0.045  Score=51.90  Aligned_cols=40  Identities=25%  Similarity=0.151  Sum_probs=34.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      +++.|.|+ |.+|.++|..|++.|++|++.+++++.++...
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   48 (247)
T 2jah_A            8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALG   48 (247)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            46777776 89999999999999999999999988776544

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.59  E-value=0.042  Score=52.19  Aligned_cols=40  Identities=23%  Similarity=0.374  Sum_probs=34.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus        14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   54 (260)
T 3awd_A           14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAV   54 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            56888876 99999999999999999999999988765543

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.59  E-value=0.031  Score=55.20  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=28.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHh--CCCc-EEEEeCCHHH
Q 009395          147 VKKVAILGGGLMGSGIATALIL--SNYP-VILKEVNEKF  182 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~--~G~~-V~l~d~~~~~  182 (535)
                      ..||+|||+|.||..++..+.+  .+.+ |.++|+++++
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~   42 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS   42 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence            3589999999999999998865  3555 4578998765

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=94.58  E-value=0.061  Score=51.53  Aligned_cols=43  Identities=16%  Similarity=0.186  Sum_probs=35.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      +++.|.|+ |-+|.++|..|++.|++|++.+++++.++...+.+
T Consensus         9 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   52 (265)
T 3lf2_A            9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESAL   52 (265)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45667766 88999999999999999999999998877665443

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=94.58  E-value=0.046  Score=52.42  Aligned_cols=41  Identities=29%  Similarity=0.327  Sum_probs=34.8

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   55 (267)
T 1iy8_A           14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA   55 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46777776 899999999999999999999999987765543

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=94.58  E-value=0.051  Score=51.15  Aligned_cols=40  Identities=23%  Similarity=0.208  Sum_probs=34.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus         8 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   48 (248)
T 2pnf_A            8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVA   48 (248)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            45777766 99999999999999999999999988766543

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.58  E-value=0.04  Score=52.14  Aligned_cols=39  Identities=18%  Similarity=0.199  Sum_probs=33.8

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus         6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   45 (245)
T 1uls_A            6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA   45 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46778876 8999999999999999999999998876543

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.56  E-value=0.11  Score=50.14  Aligned_cols=33  Identities=21%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      ++|.|||+|..|..-+..|+..|.+|++++.+.
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            689999999999999999999999999998754

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=94.56  E-value=0.069  Score=52.03  Aligned_cols=42  Identities=24%  Similarity=0.285  Sum_probs=35.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.
T Consensus        27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~   69 (302)
T 1w6u_A           27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQ   69 (302)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            56888876 8999999999999999999999999877655443

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=94.55  E-value=0.028  Score=52.58  Aligned_cols=39  Identities=33%  Similarity=0.278  Sum_probs=33.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++..
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~   45 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQAL   45 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45777766 9999999999999999999999998876543

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.54  E-value=0.038  Score=53.82  Aligned_cols=34  Identities=29%  Similarity=0.327  Sum_probs=31.5

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            468999997 9999999999999999999999986

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.54  E-value=0.056  Score=54.77  Aligned_cols=68  Identities=15%  Similarity=0.100  Sum_probs=46.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC--CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          147 VKKVAILGGGLMGSGIATALILS--NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~--G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      -.||+|||+| +|.-.+..+.+.  +++++ ++|+++++.+...++          .|             +...+++++
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~----------~g-------------v~~~~~~~~   62 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA----------FG-------------IPLYTSPEQ   62 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH----------TT-------------CCEESSGGG
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH----------hC-------------CCEECCHHH
Confidence            3589999999 798877777665  56765 789999887654321          11             233456654


Q ss_pred             -ccCCCEEEEeccCCh
Q 009395          224 -FKDVDMVIEAIIENV  238 (535)
Q Consensus       224 -~~~aDlVI~avpe~~  238 (535)
                       +.+.|+|+.|+|...
T Consensus        63 l~~~~D~v~i~~p~~~   78 (372)
T 4gmf_A           63 ITGMPDIACIVVRSTV   78 (372)
T ss_dssp             CCSCCSEEEECCC--C
T ss_pred             HhcCCCEEEEECCCcc
Confidence             578999999998653

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.52  E-value=0.091  Score=52.30  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=31.3

Q ss_pred             CcceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       146 ~~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      ..++|.|+|+ |.+|+.++..|++.|++|++++|++
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3468999998 9999999999999999999999976

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.50  E-value=0.06  Score=51.77  Aligned_cols=40  Identities=23%  Similarity=0.188  Sum_probs=34.7

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus        32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~   72 (272)
T 1yb1_A           32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETA   72 (272)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHH
Confidence            57888876 89999999999999999999999988766543

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=94.49  E-value=0.048  Score=54.46  Aligned_cols=36  Identities=33%  Similarity=0.461  Sum_probs=28.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFL  183 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~  183 (535)
                      .||+|+|+|.||..+++.+.++ +++|+ +.|++++..
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~   39 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFE   39 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHH
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHH
Confidence            5899999999999999998874 56664 467765544

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.47  E-value=0.048  Score=53.93  Aligned_cols=43  Identities=14%  Similarity=0.400  Sum_probs=36.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+.+
T Consensus         9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l   52 (319)
T 3ioy_A            9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL   52 (319)
T ss_dssp             CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            46788877 89999999999999999999999999887665443

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=94.47  E-value=0.05  Score=51.76  Aligned_cols=40  Identities=23%  Similarity=0.320  Sum_probs=33.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   43 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVA   43 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            35677776 89999999999999999999999988766544

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=94.47  E-value=0.032  Score=53.73  Aligned_cols=39  Identities=31%  Similarity=0.356  Sum_probs=33.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus        10 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   49 (270)
T 1yde_A           10 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL   49 (270)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46777776 8999999999999999999999998876543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=94.46  E-value=0.038  Score=55.44  Aligned_cols=32  Identities=31%  Similarity=0.517  Sum_probs=30.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      ..|+|||+|.+|.++|..|+++|++|+++|..
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            57999999999999999999999999999975

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=94.45  E-value=0.079  Score=52.95  Aligned_cols=37  Identities=22%  Similarity=0.418  Sum_probs=28.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLE  184 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~  184 (535)
                      .||+|+|+|.||..+++.+.++ +++|+ +.|++++...
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~   40 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEA   40 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHH
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHH
Confidence            4899999999999999998876 45654 6677755443

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=94.44  E-value=0.024  Score=56.38  Aligned_cols=200  Identities=18%  Similarity=0.144  Sum_probs=92.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC---------CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009395          147 VKKVAILGGGLMGSGIATALILS---------NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT  216 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~---------G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  216 (535)
                      +.||+|||+|.||+.++..+.+.         +++|+ ++|++.+..+. . .+.+.+......+.            +.
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~-i-d~~~~~~~~~~~~~------------~~   67 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD-F-SLVEALRMKRETGM------------LR   67 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS-C-CHHHHHHHHHHHSS------------CS
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc-c-CHHHHHhhhccCcc------------cc
Confidence            46899999999999999988875         45544 56777543221 0 00000000001111            10


Q ss_pred             cccCccc-c--cCCCEEEEeccCChHHHHHHHHHHHhhcCCCc-eeeecCCcCc--HHHHHhhcCCCCcEEeecccCCCC
Q 009395          217 GVLDYES-F--KDVDMVIEAIIENVSLKQQIFADLEKYCPPHC-ILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH  290 (535)
Q Consensus       217 ~~~~~~~-~--~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~-ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~  290 (535)
                      ...++++ +  .+.|+|++|+|.+..... ..+.+...+..+. +++.|...+.  ..+|.+.....    |.+++...+
T Consensus        68 ~~~d~~~ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~----g~~~~~ea~  142 (327)
T 3do5_A           68 DDAKAIEVVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERN----GVRLMYEAT  142 (327)
T ss_dssp             BCCCHHHHHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHT----TCCEECGGG
T ss_pred             CCCCHHHHhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhh----CCcEEEEEE
Confidence            0124443 2  468999999997643111 2233334444554 5555443222  12333332111    222221111


Q ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEeCCcccchhhhhHHHHHHHHHH-HHHcCCCHHHHHHHHHhcCCChh
Q 009395          291 VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVVGNCTGFAVNRMFFPYTQAAFL-LVERGTDLYLIDRAITKFGMPMG  369 (535)
Q Consensus       291 ~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~G~i~nri~~~~~~ea~~-l~~~G~~~~~ID~a~~g~G~p~G  369 (535)
                      .+.      +    -..+..+++++.  |.....+.   | ++|-.    .|+.+. +.++|.+.+++-.-....||.- 
T Consensus       143 v~~------g----~Pii~~l~~~l~--~~~I~~I~---G-IlnGT----~nyilt~m~~~g~~f~~~l~~Aq~~GyaE-  201 (327)
T 3do5_A          143 VGG------A----MPVVKLAKRYLA--LCEIESVK---G-IFNGT----CNYILSRMEEERLPYEHILKEAQELGYAE-  201 (327)
T ss_dssp             SST------T----SCCHHHHHTTTT--TSCEEEEE---E-ECCHH----HHHHHHHHHHHCCCHHHHHHHHHHTTSSC-
T ss_pred             eee------c----CHHHHHHHHHhh--CCCccEEE---E-EECCC----cCcchhhcCcCCcCHHHHHHHHHHcCCCC-
Confidence            110      0    012344444432  22222211   1 22222    222222 2257888888776666566621 


Q ss_pred             HHHHHHHhchHHHHHHH
Q 009395          370 PFRLADLVGFGVAIATG  386 (535)
Q Consensus       370 Pf~~~D~~Gld~~~~~~  386 (535)
                      |==..|.-|+|...+..
T Consensus       202 ~DP~~Dv~G~D~a~Kl~  218 (327)
T 3do5_A          202 ADPSYDVEGIDAALKLV  218 (327)
T ss_dssp             SSCHHHHTSHHHHHHHH
T ss_pred             CCchhhcCChhHHHHHH
Confidence            11157999999988754

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=94.43  E-value=0.071  Score=51.45  Aligned_cols=42  Identities=17%  Similarity=0.176  Sum_probs=35.1

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      +++.|.|+ |.+|.++|..|++.|++|++.+++.+.++...+.
T Consensus        28 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   70 (277)
T 4fc7_A           28 KVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARK   70 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            45667776 7899999999999999999999999887665543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.43  E-value=0.057  Score=53.76  Aligned_cols=35  Identities=29%  Similarity=0.255  Sum_probs=31.6

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      .++|.|.|+ |.+|+.++..|++.|++|++++++..
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   60 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST   60 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            468999996 99999999999999999999999644

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=94.41  E-value=0.096  Score=54.17  Aligned_cols=65  Identities=26%  Similarity=0.171  Sum_probs=43.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHh----------CCCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 009395          147 VKKVAILGGGLMGSGIATALIL----------SNYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL  215 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~----------~G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i  215 (535)
                      ..||+|||+|.||+.++..+.+          .+++| .++|+++++.+...                         ...
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-------------------------~~~   64 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-------------------------GGL   64 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-------------------------TTC
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-------------------------ccC
Confidence            3589999999999999887753          23444 46788887643210                         012


Q ss_pred             ccccCccc-c--cCCCEEEEeccC
Q 009395          216 TGVLDYES-F--KDVDMVIEAIIE  236 (535)
Q Consensus       216 ~~~~~~~~-~--~~aDlVI~avpe  236 (535)
                      ..++|+++ +  .+.|+|++|+|.
T Consensus        65 ~~~~d~~ell~d~diDvVve~tp~   88 (444)
T 3mtj_A           65 PLTTNPFDVVDDPEIDIVVELIGG   88 (444)
T ss_dssp             CEESCTHHHHTCTTCCEEEECCCS
T ss_pred             cccCCHHHHhcCCCCCEEEEcCCC
Confidence            23556654 3  368999999985

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=94.39  E-value=0.055  Score=52.27  Aligned_cols=41  Identities=20%  Similarity=0.158  Sum_probs=34.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   64 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLK   64 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46777766 899999999999999999999999987765443

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.39  E-value=0.052  Score=53.33  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=31.5

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      +++|.|+|+ |.+|+.++..|++.|++|++.+|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            568999996 9999999999999999999999985

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.37  E-value=0.036  Score=53.61  Aligned_cols=41  Identities=22%  Similarity=0.418  Sum_probs=35.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   53 (281)
T 3svt_A           12 RTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQ   53 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46777776 899999999999999999999999988766543

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=94.34  E-value=0.085  Score=52.60  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=48.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH--HHHhhhcccccccCccc
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQE--KFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~--~~~~~~~~i~~~~~~~~  223 (535)
                      .||+|+|+|.||..+++.+... +.+| .+.|++++.+....+..     ..--.|.+...  ....  ..+....++++
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~-----g~~~~~~~~~~v~~~~~--~~~~v~~d~~~   75 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKEL-----GIPVYAASEEFIPRFEK--EGFEVAGTLND   75 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHT-----TCCEEESSGGGHHHHHH--HTCCCSCBHHH
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhc-----CccccccccccceeccC--CceEEcCcHHH
Confidence            5899999999999999998876 4565 45688766554332110     00000000000  0000  11223334443


Q ss_pred             -ccCCCEEEEeccCChH
Q 009395          224 -FKDVDMVIEAIIENVS  239 (535)
Q Consensus       224 -~~~aDlVI~avpe~~~  239 (535)
                       +.++|+|++|.|....
T Consensus        76 l~~~vDvV~~aTp~~~h   92 (334)
T 2czc_A           76 LLEKVDIIVDATPGGIG   92 (334)
T ss_dssp             HHTTCSEEEECCSTTHH
T ss_pred             hccCCCEEEECCCcccc
Confidence             4689999999997643

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.34  E-value=0.053  Score=51.94  Aligned_cols=42  Identities=21%  Similarity=0.168  Sum_probs=35.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      +++.|.|+ |.+|.++|..|++.|++|++.+++.+.++...+.
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   54 (264)
T 3ucx_A           12 KVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQ   54 (264)
T ss_dssp             CEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH
Confidence            45777776 7899999999999999999999999887765543

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=94.31  E-value=0.037  Score=52.55  Aligned_cols=40  Identities=25%  Similarity=0.132  Sum_probs=33.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      +++.|.|+ |-+|.++|..|++.|++|++.+++++.++...
T Consensus        10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~   50 (248)
T 3op4_A           10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAIS   50 (248)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            45666665 89999999999999999999999988776543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=94.28  E-value=0.2  Score=48.36  Aligned_cols=39  Identities=23%  Similarity=0.411  Sum_probs=33.5

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ||+|| |+ +-+|.++|..|++.|.+|++.|++++.++...
T Consensus        30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~   70 (273)
T 4fgs_A           30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAI   70 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            56666 55 78999999999999999999999999887654

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=94.27  E-value=0.13  Score=51.22  Aligned_cols=38  Identities=18%  Similarity=0.268  Sum_probs=28.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEEE-EeC--CHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVIL-KEV--NEKFLEA  185 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~l-~d~--~~~~~~~  185 (535)
                      .||+|+|+|.+|+.+++.+..+ +++|+. .|+  +.+.+..
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~   45 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVY   45 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            5899999999999999988765 577664 453  5655443

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=94.27  E-value=0.045  Score=55.42  Aligned_cols=69  Identities=19%  Similarity=0.254  Sum_probs=47.4

Q ss_pred             eEEEEeCChhhHHHHHHHHhCC--------Cc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          149 KVAILGGGLMGSGIATALILSN--------YP-VILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G--------~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      ||+|||+|.||...+..+....        .+ |.++|+++++++...++          .|            .-...+
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~----------~g------------~~~~~~   65 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGK----------LG------------WSTTET   65 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHH----------HT------------CSEEES
T ss_pred             cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHH----------cC------------CCcccC
Confidence            7999999999998877765432        24 45789999987654321          11            112345


Q ss_pred             Cccc-c--cCCCEEEEeccCChH
Q 009395          220 DYES-F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       220 ~~~~-~--~~aDlVI~avpe~~~  239 (535)
                      |+++ +  .+.|+|+.|+|....
T Consensus        66 d~~~ll~~~~iDaV~I~tP~~~H   88 (390)
T 4h3v_A           66 DWRTLLERDDVQLVDVCTPGDSH   88 (390)
T ss_dssp             CHHHHTTCTTCSEEEECSCGGGH
T ss_pred             CHHHHhcCCCCCEEEEeCChHHH
Confidence            6654 3  468999999997655

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=94.26  E-value=0.041  Score=52.15  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=34.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |-+|.++|..|++.|++|++.+++++.++...
T Consensus         7 k~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~   47 (247)
T 3rwb_A            7 KTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAA   47 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            46777776 89999999999999999999999998876543

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.25  E-value=0.18  Score=49.15  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=31.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ++|.|.|+ |.+|+.++..|+++|++|++.++++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIG   37 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            68999995 99999999999999999999999844

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=94.23  E-value=0.028  Score=59.17  Aligned_cols=35  Identities=31%  Similarity=0.549  Sum_probs=31.6

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      |++|+|||+|.-|.+-|..|+++|++|++++.++.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~   35 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK   35 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence            67899999999999999999999999999998754

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.22  E-value=0.054  Score=52.46  Aligned_cols=40  Identities=23%  Similarity=0.269  Sum_probs=34.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++.++...
T Consensus        29 k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~   69 (286)
T 1xu9_A           29 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVV   69 (286)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            56777877 89999999999999999999999998876544

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.22  E-value=0.032  Score=53.92  Aligned_cols=36  Identities=22%  Similarity=0.199  Sum_probs=33.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      +++|.|.|+|.+|+.++..|+++|++|++++++++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            568999999999999999999999999999998654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.20  E-value=0.042  Score=53.76  Aligned_cols=41  Identities=27%  Similarity=0.246  Sum_probs=33.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        27 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~   68 (297)
T 1xhl_A           27 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQ   68 (297)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            35556665 899999999999999999999999987765543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.20  E-value=0.034  Score=53.30  Aligned_cols=41  Identities=24%  Similarity=0.362  Sum_probs=34.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+
T Consensus        11 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~   52 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVA   52 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45556665 899999999999999999999999988766543

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=94.19  E-value=0.088  Score=53.02  Aligned_cols=99  Identities=16%  Similarity=0.261  Sum_probs=56.0

Q ss_pred             cceEEEEe-CChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          147 VKKVAILG-GGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       147 ~~kV~vIG-~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      ..||+|+| .|.+|..+.+.|.++. ++++.+....+.-.    .+...+...  .+.+        ...+.... .+.+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~----~~~~~~~~~--~~~v--------~~dl~~~~-~~~~   80 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQ----SMESVFPHL--RAQK--------LPTLVSVK-DADF   80 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTS----CHHHHCGGG--TTSC--------CCCCBCGG-GCCG
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCC----CHHHhCchh--cCcc--------cccceecc-hhHh
Confidence            35899999 7999999999998875 37776654322110    000000000  0100        00111111 2235


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  266 (535)
                      .++|+||+|+|.....  +   ....+ ..++.++++++...
T Consensus        81 ~~vDvVf~atp~~~s~--~---~a~~~-~aG~~VId~sa~~R  116 (359)
T 1xyg_A           81 STVDAVFCCLPHGTTQ--E---IIKEL-PTALKIVDLSADFR  116 (359)
T ss_dssp             GGCSEEEECCCTTTHH--H---HHHTS-CTTCEEEECSSTTT
T ss_pred             cCCCEEEEcCCchhHH--H---HHHHH-hCCCEEEECCcccc
Confidence            6899999999866442  2   22334 66788888888653

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=94.18  E-value=0.07  Score=53.47  Aligned_cols=98  Identities=17%  Similarity=0.185  Sum_probs=55.0

Q ss_pred             cceEEEEe-CChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          147 VKKVAILG-GGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       147 ~~kV~vIG-~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      +.||+|+| .|.+|..+.+.|..+.. +++.+......-..        ++..  .+.+..      ...+... +.+++
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~--------~~~~--~~~~~g------~~~~~~~-~~~~~   66 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEP--------VHFV--HPNLRG------RTNLKFV-PPEKL   66 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSB--------GGGT--CGGGTT------TCCCBCB-CGGGC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCch--------hHHh--CchhcC------ccccccc-chhHh
Confidence            46899999 69999999999987753 76665443221000        0000  000000      0011111 12235


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  266 (535)
                      .++|+||+|+|....  .++...   ++..++.++++++...
T Consensus        67 ~~vDvV~~a~g~~~s--~~~a~~---~~~aG~~VId~Sa~~r  103 (345)
T 2ozp_A           67 EPADILVLALPHGVF--AREFDR---YSALAPVLVDLSADFR  103 (345)
T ss_dssp             CCCSEEEECCCTTHH--HHTHHH---HHTTCSEEEECSSTTS
T ss_pred             cCCCEEEEcCCcHHH--HHHHHH---HHHCCCEEEEcCcccc
Confidence            789999999986643  333333   3456777778877543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=94.12  E-value=0.077  Score=50.70  Aligned_cols=41  Identities=29%  Similarity=0.363  Sum_probs=34.3

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      |+++| |+ +-+|.++|..|++.|..|+++|++++.++...+.
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~   50 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQE   50 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence            55555 55 7899999999999999999999999988766543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.12  E-value=0.038  Score=53.42  Aligned_cols=41  Identities=20%  Similarity=0.187  Sum_probs=34.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+
T Consensus        33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   74 (276)
T 3r1i_A           33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVAD   74 (276)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45667776 899999999999999999999999887765543

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=94.11  E-value=0.051  Score=51.59  Aligned_cols=39  Identities=21%  Similarity=0.175  Sum_probs=32.9

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   41 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK   41 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4556665 89999999999999999999999988776543

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=94.08  E-value=0.042  Score=52.67  Aligned_cols=40  Identities=25%  Similarity=0.184  Sum_probs=34.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++.+++++..+...
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   48 (267)
T 2gdz_A            8 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCK   48 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            46778876 89999999999999999999999988765443

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.04  E-value=0.041  Score=53.23  Aligned_cols=40  Identities=23%  Similarity=0.190  Sum_probs=33.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus         7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   47 (280)
T 1xkq_A            7 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETR   47 (280)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            35666665 89999999999999999999999998776543

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=94.01  E-value=0.064  Score=53.35  Aligned_cols=65  Identities=12%  Similarity=0.128  Sum_probs=44.5

Q ss_pred             CCCcceEEEEeCChhhH-HHHHHHHhC-CCcE-EEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          144 PRRVKKVAILGGGLMGS-GIATALILS-NYPV-ILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       144 ~~~~~kV~vIG~G~mG~-~iA~~l~~~-G~~V-~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      .++..||+|||+|.||. ..+..+... +++| .++|+++++                 .             .+...++
T Consensus        22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~-----------------~-------------g~~~~~~   71 (330)
T 4ew6_A           22 SMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV-----------------E-------------GVNSYTT   71 (330)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC-----------------T-------------TSEEESS
T ss_pred             cCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh-----------------c-------------CCCccCC
Confidence            34456899999999998 678877765 6675 478888542                 0             1223445


Q ss_pred             ccc-c---cCCCEEEEeccCCh
Q 009395          221 YES-F---KDVDMVIEAIIENV  238 (535)
Q Consensus       221 ~~~-~---~~aDlVI~avpe~~  238 (535)
                      +++ +   .+.|+|+.|+|...
T Consensus        72 ~~~ll~~~~~vD~V~i~tp~~~   93 (330)
T 4ew6_A           72 IEAMLDAEPSIDAVSLCMPPQY   93 (330)
T ss_dssp             HHHHHHHCTTCCEEEECSCHHH
T ss_pred             HHHHHhCCCCCCEEEEeCCcHH
Confidence            544 2   46899999998543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.00  E-value=0.06  Score=52.70  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=35.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus        32 k~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~   74 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNG   74 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            46777776 8899999999999999999999999887765543

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=93.99  E-value=0.055  Score=51.91  Aligned_cols=43  Identities=23%  Similarity=0.285  Sum_probs=35.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.+
T Consensus        21 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   64 (266)
T 4egf_A           21 KRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRAL   64 (266)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45566665 89999999999999999999999998887665443

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=93.99  E-value=0.053  Score=50.92  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=33.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILK-EVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~-d~~~~~~~~~  186 (535)
                      ++|.|.|+ |.+|..++..|++.|++|++. +++++..+..
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~   42 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEV   42 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            46777776 999999999999999999998 8998876544

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=93.98  E-value=0.048  Score=52.65  Aligned_cols=40  Identities=20%  Similarity=0.254  Sum_probs=33.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~   62 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALA   62 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            45666666 89999999999999999999999988776544

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.96  E-value=0.073  Score=50.17  Aligned_cols=40  Identities=20%  Similarity=0.104  Sum_probs=34.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++..+...
T Consensus         6 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~   46 (247)
T 3lyl_A            6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFE   46 (247)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            45667776 89999999999999999999999998876554

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.96  E-value=0.057  Score=52.01  Aligned_cols=41  Identities=22%  Similarity=0.064  Sum_probs=33.6

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      +|.|.|+ |-+|.++|..|++.|++|++.+++++.++...+.
T Consensus        30 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   71 (270)
T 3ftp_A           30 VAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAA   71 (270)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            4445555 8999999999999999999999999887665443

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=93.95  E-value=0.042  Score=54.01  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ++|.|+|+ |.+|+.++..|++.|++|++++|+++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            47999996 99999999999999999999999874

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=93.95  E-value=0.067  Score=56.71  Aligned_cols=36  Identities=31%  Similarity=0.314  Sum_probs=32.7

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      .+||.|.|+ |.+|+.++..|++.|++|+++++++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            568999995 999999999999999999999998654

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=93.93  E-value=0.041  Score=52.71  Aligned_cols=36  Identities=22%  Similarity=0.174  Sum_probs=31.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+++++..
T Consensus        28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~   64 (260)
T 3gem_A           28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEHAS   64 (260)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence            45667776 8999999999999999999999998764

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.91  E-value=0.053  Score=51.62  Aligned_cols=35  Identities=29%  Similarity=0.300  Sum_probs=31.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.
T Consensus         7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   42 (256)
T 2d1y_A            7 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG   42 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH
Confidence            46778876 899999999999999999999999876

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=93.90  E-value=0.12  Score=51.38  Aligned_cols=37  Identities=19%  Similarity=0.032  Sum_probs=33.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLE  184 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~  184 (535)
                      .++|.|+|.|..|..++..|.+.|+ |+++|.|++.++
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~  151 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK  151 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh
Confidence            3579999999999999999999999 999999999876

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=93.84  E-value=0.087  Score=50.67  Aligned_cols=37  Identities=19%  Similarity=0.220  Sum_probs=32.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhC--CCcEEEEeCCHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILS--NYPVILKEVNEKFLE  184 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~  184 (535)
                      ++|.|.|+ |.+|+.++..|++.  |++|++.+++++..+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~   40 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS   40 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh
Confidence            46889987 99999999999998  999999999876543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=93.84  E-value=0.059  Score=52.06  Aligned_cols=40  Identities=18%  Similarity=0.202  Sum_probs=34.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...
T Consensus        30 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~   70 (276)
T 2b4q_A           30 RIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTA   70 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            56777776 89999999999999999999999988766543

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=93.82  E-value=0.019  Score=58.23  Aligned_cols=82  Identities=16%  Similarity=0.214  Sum_probs=56.1

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      .||.|||+ |..|.+-+..+..-|.   .|++||+++..                 +|.                 .++.
T Consensus       215 ~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~-----------------~g~-----------------~~~~  260 (394)
T 2qrj_A          215 PTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS-----------------RGG-----------------PFDE  260 (394)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT-----------------TCS-----------------CCTH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc-----------------cCC-----------------chhh
Confidence            47999999 9999999999999998   89999987631                 121                 1245


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhc-CCCceeeecCC
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYC-PPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~-~~~~ii~s~tS  263 (535)
                      +.++|+||.|+.-....-+-+-++..+.+ +++.+|++.+.
T Consensus       261 i~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA~  301 (394)
T 2qrj_A          261 IPQADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVSA  301 (394)
T ss_dssp             HHHSSEEEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETTC
T ss_pred             HhhCCEEEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEec
Confidence            77999999999621100001122333446 78888877654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=93.80  E-value=0.041  Score=54.74  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=31.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHh---CCCcEEEEeCCH
Q 009395          147 VKKVAILGGGLMGSGIATALIL---SNYPVILKEVNE  180 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~---~G~~V~l~d~~~  180 (535)
                      |++|+|||+|..|.+.|..|++   +|++|+++|.+.
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~   37 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKAD   37 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCC
Confidence            3589999999999999999999   999999999764

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=93.77  E-value=0.13  Score=51.41  Aligned_cols=35  Identities=14%  Similarity=0.258  Sum_probs=32.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      ++|+|+|.|++|...|..+...|.+|+++|+++++
T Consensus       176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            68999999999999999999999999999999764

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=93.70  E-value=0.083  Score=52.24  Aligned_cols=39  Identities=23%  Similarity=0.415  Sum_probs=33.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|.|+ |.+|+.++..|++.|++|++.+++.+.....
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~   45 (341)
T 3enk_A            6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREA   45 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHH
T ss_pred             cEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHH
Confidence            58999986 9999999999999999999999986654433

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=93.70  E-value=0.066  Score=47.72  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      .+|+|||+|..|..+|..|++.|.+|+++++++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999999875

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=93.70  E-value=0.026  Score=55.06  Aligned_cols=93  Identities=13%  Similarity=-0.052  Sum_probs=56.2

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc-
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF-  224 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-  224 (535)
                      ..||+|+|+ |.||..++..+.+.|++ .++.+++...                 |.       .. ..+....+++++ 
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~-----------------g~-------~~-~G~~vy~sl~el~   60 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKG-----------------GT-------TH-LGLPVFNTVREAV   60 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCT-----------------TC-------EE-TTEEEESSHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcc-----------------cc-------ee-CCeeccCCHHHHh
Confidence            468999998 99999999999888988 4556665421                 00       00 112233455443 


Q ss_pred             c--CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHH
Q 009395          225 K--DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNL  269 (535)
Q Consensus       225 ~--~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~  269 (535)
                      .  ++|++|.++|...  -.+++.+..+. .-+.++ ..+++++.++
T Consensus        61 ~~~~~D~viI~tP~~~--~~~~~~ea~~~-Gi~~iV-i~t~G~~~~~  103 (288)
T 2nu8_A           61 AATGATASVIYVPAPF--CKDSILEAIDA-GIKLII-TITEGIPTLD  103 (288)
T ss_dssp             HHHCCCEEEECCCGGG--HHHHHHHHHHT-TCSEEE-ECCCCCCHHH
T ss_pred             hcCCCCEEEEecCHHH--HHHHHHHHHHC-CCCEEE-EECCCCCHHH
Confidence            4  7999999998653  34555544332 223333 3455666653

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=93.68  E-value=0.038  Score=55.60  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      -|+|||+|.-|.+.|..|+++|++|+++|+.++
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            399999999999999999999999999998653

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.66  E-value=0.52  Score=45.48  Aligned_cols=40  Identities=20%  Similarity=0.067  Sum_probs=34.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+++.+.++...
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   69 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVA   69 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            45667776 88999999999999999999999998776543

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=93.61  E-value=0.075  Score=50.66  Aligned_cols=40  Identities=28%  Similarity=0.352  Sum_probs=32.7

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF-LEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~-~~~~~  187 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++. ++...
T Consensus         5 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   46 (260)
T 1x1t_A            5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVR   46 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHH
Confidence            35666665 899999999999999999999999776 55443

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=93.60  E-value=0.063  Score=51.14  Aligned_cols=42  Identities=17%  Similarity=0.215  Sum_probs=34.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      +++.|.|+ |-+|.++|..|++.|++|++.+++.+.++...+.
T Consensus        13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~   55 (256)
T 3gaf_A           13 AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAA   55 (256)
T ss_dssp             CEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            45666666 8999999999999999999999999887665443

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=93.57  E-value=0.048  Score=51.87  Aligned_cols=39  Identities=21%  Similarity=0.232  Sum_probs=33.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++..
T Consensus         7 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~   46 (253)
T 1hxh_A            7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQL   46 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            45666666 8999999999999999999999998876544

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=93.51  E-value=0.1  Score=48.64  Aligned_cols=41  Identities=17%  Similarity=0.157  Sum_probs=34.3

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      |++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~   42 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVT   42 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            356778877 89999999999999999999999998876543

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.49  E-value=0.057  Score=52.04  Aligned_cols=42  Identities=10%  Similarity=0.270  Sum_probs=34.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      ++|.|.|+ |.+|.++|..|++.|++|++.+++++.++...+.
T Consensus        27 k~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~   69 (271)
T 4ibo_A           27 RTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQE   69 (271)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            34555565 8999999999999999999999999887765543

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=93.47  E-value=0.5  Score=44.23  Aligned_cols=41  Identities=20%  Similarity=0.187  Sum_probs=34.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++|.|.|+ |.+|..+|..|++.|++|++.+++++.++...+
T Consensus        15 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   56 (247)
T 3i1j_A           15 RVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSD   56 (247)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHH
Confidence            45667776 899999999999999999999999988766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	535
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	7e-37
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	2e-33
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	8e-20
d1wdka1	124	a.100.1.3 (A:497-620) Fatty oxidation complex alph	1e-19
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	4e-14
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	6e-12
d1wdka2	95	a.100.1.3 (A:621-715) Fatty oxidation complex alph	4e-09
d1wdka2	95	a.100.1.3 (A:621-715) Fatty oxidation complex alph	8e-04
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	4e-05
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	0.002
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	0.003
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	0.004
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	0.004

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score =  132 bits (333), Expect = 7e-37
 Identities = 70/184 (38%), Positives = 112/184 (60%)

Query: 145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT 204
           + VK+ A+LG G+MG GIA        P+++K++NE  +E G+      L  RV KG+MT
Sbjct: 2   KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMT 61

Query: 205 QEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST 264
             K  + ++ +   L Y  F +VD+V+EA++EN  +KQ + A++E +     ILASNTST
Sbjct: 62  PAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST 121

Query: 265 IDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV 324
           I ++L+ +     +  VG HFF+P H+MPL+E++R  ++S   +   +   KK+ K PIV
Sbjct: 122 ISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181

Query: 325 VGNC 328
           V +C
Sbjct: 182 VNDC 185

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 2e-33
 Identities = 65/188 (34%), Positives = 100/188 (53%), Gaps = 6/188 (3%)

Query: 147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGK---- 202
           VK V ++GGGLMG+GIA     + + V+L +  E  L      +  +L+   KK      
Sbjct: 4   VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63

Query: 203 -MTQEKFEKTISLLTGVLDYES-FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS 260
               E  EKT+S +    D  S     D+V+EAI+EN+ +K ++F  L+K+   H I AS
Sbjct: 64  KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123

Query: 261 NTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKK 320
           NTS++ +  I   T  +DR  G HFF+P  VM L+E+++T  TS +    L+D  K + K
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 183

Query: 321 TPIVVGNC 328
            P+   + 
Sbjct: 184 HPVSCKDT 191

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 88.2 bits (217), Expect = 8e-20
 Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 3/142 (2%)

Query: 1   MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVAT---LYKTDKIE 57
            + + K  + E+A  +  VDAVV  ++L + A       +     + A      +  K+ 
Sbjct: 167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLN 226

Query: 58  PLGEAREIFKFARAQARKQAPNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSET 117
            + +           A +  PN   P+  I  ++     G    L+ EA  F KL ++  
Sbjct: 227 AIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSA 286

Query: 118 CKSLVHIFFAQRGTSKVPGVTD 139
              L+ +F   +   K   V D
Sbjct: 287 SNCLIGLFLNDQELKKKAKVYD 308

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 82.5 bits (203), Expect = 1e-19
 Identities = 41/114 (35%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQF 389
           GF VNR+ FPY      LV  G D   ID+ + KFG PMGP  L D+VG           
Sbjct: 1   GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVM 60

Query: 390 IENFPERTYKS--MIIPIMQEDKRAGETTRKGFYLYDERRKASPDPEVKKFIEK 441
            E FP+R        I  + E KR G+   KGFY Y+  +K      V   + +
Sbjct: 61  AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLE 114

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 4e-14
 Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFG--MPMGPFRLADLVGFGVAIATGM 387
           GF VNR+  PY   A  L ERG           K G   PMGPF L D VG         
Sbjct: 1   GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60

Query: 388 QFIENFPE--RTYKSMIIPIMQEDKRAGETTRKGFYLY 423
            + E   E      S  +  +  + + G+ T +GFY Y
Sbjct: 61  GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKY 98

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 63.4 bits (154), Expect = 6e-12
 Identities = 28/227 (12%), Positives = 61/227 (26%), Gaps = 33/227 (14%)

Query: 125 FFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALIL--------SNYPVILK 176
           F      +K  G  ++ L           G  L+        ++            V++ 
Sbjct: 22  FMRACEVAKEVGKPEIAL----THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVID 77

Query: 177 EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY--------------- 221
           E + K +               K  ++ + K ++        +                 
Sbjct: 78  EFDPKEVMEAHLSGNPE-SIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDR 136

Query: 222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTYSKD- 278
           E+ +  D+VI  +    + +  I        P   I+    +        I +    +D 
Sbjct: 137 EAVEGADIVITWL-PKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDL 195

Query: 279 RIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV 325
            I   H      +   + I      S + +  L +IGK  +     +
Sbjct: 196 NITSYHPGCVPEMKGQVYIAE-GYASEEAVNKLYEIGKIARGKAFKM 241

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 51.8 bits (124), Expect = 4e-09
 Identities = 16/51 (31%), Positives = 28/51 (54%)

Query: 457 LSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTF 507
           ++++DI+  +  P+  E  R   +GI   AA+ D+  V G+GFP +R    
Sbjct: 2   VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGAL 52

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 36.7 bits (85), Expect = 8e-04
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 14/95 (14%)

Query: 333 VNRMFFPYTQAAFLLVERGTDLYLIDR---AITKFGMPM---GPFRLADLVGFGVAIATG 386
           +N M  P        +E G      +     +   G P+   G  R  D +G    +A  
Sbjct: 8   INWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVAL- 66

Query: 387 MQFIENFPERTYKSMIIPIMQEDKRAGETTRKGFY 421
                      + +     ++E  + G    + F+
Sbjct: 67  ADQYAELGALYHPT---AKLREMAKNG----QSFF 94

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 21/145 (14%), Positives = 45/145 (31%), Gaps = 14/145 (9%)

Query: 148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEK 207
           K  A+LG G  G   A  L L    V+  +++ + ++         +Q R          
Sbjct: 2   KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIK--------EIQDRGAIIAEGPGL 53

Query: 208 FEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL----ASNTS 263
                  L       + KD D+++  +         I A++  Y     ++     +   
Sbjct: 54  AGTAHPDLLTSDIGLAVKDADVILIVVPAIH--HASIAANIASYISEGQLIILNPGATGG 111

Query: 264 TIDLNLIGERTYSKDRIVGAHFFSP 288
            ++   I     + +  +G      
Sbjct: 112 ALEFRKILRENGAPEVTIGETSSML 136

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 28/150 (18%)

Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKF 208
           K+ I+G G +GS  A AL++  +   +  ++          V            +    F
Sbjct: 2   KIGIVGLGRVGSSTAFALLMKGFAREMVLID----------VDKKRAEGDALDLIHGTPF 51

Query: 209 EKTISLLTGVLDYESFKDVDMVIEAII--------------ENVSLKQQIFADLEKYCP- 253
            +  ++  G  DY   K  D+VI A                 N  + ++I  ++ KY P 
Sbjct: 52  TRRANIYAG--DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPD 109

Query: 254 PHCILASNTSTIDLNLIGERT-YSKDRIVG 282
              I+ +N   +      + +     ++ G
Sbjct: 110 SIVIVVTNPVDVLTYFFLKESGMDPRKVFG 139

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKF 182
           K+ ++G GL+G+ +A  L    + +I     +  
Sbjct: 2   KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQST 35

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 17/142 (11%), Positives = 49/142 (34%), Gaps = 9/142 (6%)

Query: 148 KKVAILGGGLMGSGIATALILSNYP--VILKEVNEKFLEAG---IGRVRANLQSRVKKGK 202
            +V ++G G +G+    AL+       ++L + NE             +      V    
Sbjct: 7   ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66

Query: 203 MTQEKFEKTISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCP-PHCILASN 261
              +       ++      +   +  + +  + +N+++ + I   +         ++A+N
Sbjct: 67  GDYDDCRDADLVVICAGANQKPGETRLDL--VDKNIAIFRSIVESVMASGFQGLFLVATN 124

Query: 262 TSTIDLNLIGERT-YSKDRIVG 282
              I      + +    +R++G
Sbjct: 125 PVDILTYATWKFSGLPHERVIG 146

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 9/144 (6%)

Query: 148 KKVAILGGGLMGSGIATALILSNYP--VILKEVNEKFLEAG---IGRVRANLQSRVKKGK 202
           +K+ I+G G +G+ +A  LI        +  + NE  ++A         ANL++      
Sbjct: 2   RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 203 MTQEKFEKT--ISLLTGVLDYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL-A 259
                      +    G +  +           +    S+ Q +  +L++      ++  
Sbjct: 62  NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121

Query: 260 SNTSTIDLNLIGERT-YSKDRIVG 282
           SN   +   L    T +   +++G
Sbjct: 122 SNPVDVITALFQHVTGFPAHKVIG 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	535
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	100.0
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	100.0
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.94
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.93
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.79
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.73
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.72
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.7
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.68
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	99.62
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.6
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.58
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.54
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.54
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.52
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.44
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	99.4
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	99.36
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	99.34
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	99.3
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	99.3
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.28
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.28
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	99.23
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.23
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.22
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.22
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	99.21
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	99.19
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.18
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.17
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.11
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.01
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.01
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.95
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.94
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	98.94
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.91
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.91
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.91
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.8
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.79
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.79
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.78
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	98.71
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.68
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.65
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.65
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.65
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.63
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.61
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.42
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	98.35
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.33
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.33
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.3
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.24
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	98.19
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.18
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.1
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.07
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.04
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.96
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.91
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.9
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.85
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.81
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.77
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.73
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.67
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.64
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.63
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.58
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.57
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.53
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.52
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.51
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	97.5
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.45
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.29
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	97.21
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.19
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.19
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.18
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.15
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.14
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.11
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.05
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.0
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.0
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.99
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.9
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.87
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.85
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.82
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.81
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.74
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.73
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.72
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.71
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.6
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.59
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.55
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.5
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.49
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.46
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.45
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.4
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.36
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.33
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.3
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.3
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.2
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.18
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.11
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.98
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.98
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.94
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.93
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.91
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.89
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.88
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.88
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.85
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.83
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.81
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.79
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.75
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.69
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.63
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.62
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.62
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.55
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.54
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.53
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.52
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.51
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.48
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.46
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.43
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.43
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.38
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.37
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.35
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.32
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.26
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.24
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.22
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.2
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.19
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.1
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.06
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.95
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.94
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.91
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.9
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.9
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.84
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.83
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.8
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.7
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.69
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.69
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.64
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.62
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.62
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.59
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	94.58
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	94.57
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.55
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.55
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.53
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.5
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.46
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	94.44
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.44
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.42
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.41
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.39
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.37
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.34
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.28
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.18
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	94.15
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.13
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.1
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	94.09
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.05
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.05
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.02
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.97
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.85
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.82
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.76
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.76
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.72
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.68
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.65
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.63
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.6
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.58
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	93.56
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	93.52
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.41
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.39
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.35
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.33
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.22
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.19
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	93.08
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	93.07
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.95
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.9
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.8
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	92.67
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	92.67
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.63
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.61
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	92.56
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	92.54
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.49
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.34
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.2
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.19
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.11
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.03
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.03
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.93
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.92
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	91.92
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.81
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.79
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	91.79
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.72
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	91.72
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	91.68
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	91.55
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.52
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.48
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.22
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.16
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.08
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.99
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.9
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	90.8
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.7
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	90.62
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.61
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	90.49
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.43
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.38
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	90.34
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.21
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.9
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	89.86
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.65
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	89.59
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	89.55
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.53
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.4
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	89.36
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.16
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.05
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	88.95
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	88.87
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	88.71
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	88.5
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	88.44
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.4
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	88.39
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	88.39
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	88.36
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	88.3
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	88.3
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	88.05
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	88.05
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.04
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.03
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.97
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	87.94
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	87.84
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	87.79
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	87.4
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	87.2
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	87.04
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.76
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	86.68
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	86.33
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	86.31
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	86.24
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.13
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.11
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	86.08
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	85.89
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	85.75
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	85.6
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	85.59
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	85.49
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	85.47
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	85.46
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	85.14
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	85.03
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	84.64
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	84.42
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	84.35
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	84.34
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	84.28
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	84.1
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	83.89
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	83.89
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	83.83
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.83
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	83.73
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	83.3
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	83.24
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	83.2
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	82.9
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	82.84
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	82.7
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	82.43
d1e5da1	152	Rubredoxin oxygen:oxidoreductase (ROO), C-terminal	82.22
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	81.65
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	80.88
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	80.73
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	80.45
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	80.32
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	80.27
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.19
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	80.11
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	80.04
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	80.01

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=1.5e-39  Score=300.54  Aligned_cols=185  Identities=38%  Similarity=0.674  Sum_probs=179.9

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      +.|+||+|||+|.||++||..++++|++|++||++++.++++.+++.+.+.+.+.++.+++...+..++++..+++++++
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF   81 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEEeCCCCC
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIVRTNQTS  304 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv~~~~ts  304 (535)
                      .+||+||||+||++++|+++|++|++++++++||+||||+++++++++.+.+|+||+|+|||+|++.++++|+++++.|+
T Consensus        82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~  161 (186)
T d1wdka3          82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS  161 (186)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred             cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCceEEeCCcc
Q 009395          305 PQVIVDLLDIGKKIKKTPIVVGNCT  329 (535)
Q Consensus       305 ~e~~~~~~~l~~~lGk~~i~v~d~~  329 (535)
                      +++++.+..|++.+|+.|++++|.|
T Consensus       162 ~~~~~~~~~~~~~lgk~pv~v~d~P  186 (186)
T d1wdka3         162 DLAVATTVAYAKKMGKNPIVVNDCP  186 (186)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeccC
Confidence            9999999999999999999999876

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-39  Score=297.95  Aligned_cols=185  Identities=35%  Similarity=0.559  Sum_probs=173.7

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-----HHHHHhhhccccccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT-----QEKFEKTISLLTGVL  219 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-----~~~~~~~~~~i~~~~  219 (535)
                      +.|+||+|||+|.||++||..++++|++|++||++++.++.+.+++++.+...++++...     ....+..++++..++
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            458999999999999999999999999999999999999999999999999999988764     334556678888888


Q ss_pred             Ccc-cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEEEE
Q 009395          220 DYE-SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLEIV  298 (535)
Q Consensus       220 ~~~-~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lveiv  298 (535)
                      +++ .+++||+||||+||++++|+++|+++++.+++++|++||||++++++++..+.+|+||+|+|||||++.+++||++
T Consensus        82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv  161 (192)
T d1f0ya2          82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI  161 (192)
T ss_dssp             CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEE
T ss_pred             hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEc
Confidence            874 5899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCceEEeCCcc
Q 009395          299 RTNQTSPQVIVDLLDIGKKIKKTPIVVGNCT  329 (535)
Q Consensus       299 ~~~~ts~e~~~~~~~l~~~lGk~~i~v~d~~  329 (535)
                      +++.|++++++.+.+|++.+|+.|++++|.|
T Consensus       162 ~g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P  192 (192)
T d1f0ya2         162 KTPMTSQKTFESLVDFSKALGKHPVSCKDTP  192 (192)
T ss_dssp             CCTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence            9999999999999999999999999999876

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.94  E-value=4.9e-27  Score=200.35  Aligned_cols=110  Identities=38%  Similarity=0.646  Sum_probs=95.6

Q ss_pred             cchhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCC--CccCccHHHHH
Q 009395          330 GFAVNRMFFPYTQAAFLLVERGTDLYLIDRAITKFGMPMGPFRLADLVGFGVAIATGMQFIENFPER--TYKSMIIPIMQ  407 (535)
Q Consensus       330 G~i~nri~~~~~~ea~~l~~~G~~~~~ID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~~~  407 (535)
                      ||++||++.++++||++++++|++|++||.+++++|+|||||+++|.+|||+++++++.+++.++++  ..+++++++|+
T Consensus         1 GFi~NRi~~~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~mv   80 (124)
T d1wdka1           1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALY   80 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999988764  34678999999


Q ss_pred             HCCCCCccCCceeeeecCCCC----CCCChhHHHHH
Q 009395          408 EDKRAGETTRKGFYLYDERRK----ASPDPEVKKFI  439 (535)
Q Consensus       408 ~~G~~G~k~g~GFY~y~~~~~----~~~~~~~~~~~  439 (535)
                      ++|++|+|||+|||+|+++++    ...|+++.+.+
T Consensus        81 ~~g~lG~Ktg~GFY~y~~~~~~~~~~~~d~~~~~~~  116 (124)
T d1wdka1          81 EAKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVL  116 (124)
T ss_dssp             HTTCCBTTTTBSSSEEC-------CEECCTHHHHHH
T ss_pred             HcCCccccCCcEeeEcCCCCCCCCCCCCCHHHHHHH
Confidence            999999999999999986543    24466655544

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-26  Score=190.44  Aligned_cols=95  Identities=36%  Similarity=0.535  Sum_probs=89.7

Q ss_pred             cchhhhhHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCChhHHHHHHHhchHHHHHHHHHHHHhCCCC--CccCccHHH
Q 009395          330 GFAVNRMFFPYTQAAFLLVERGT-DLYLIDRAIT-KFGMPMGPFRLADLVGFGVAIATGMQFIENFPER--TYKSMIIPI  405 (535)
Q Consensus       330 G~i~nri~~~~~~ea~~l~~~G~-~~~~ID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~~~~--~~~~~~l~~  405 (535)
                      ||++||++.++++||++++++|+ ||++||.+++ ++|+|+|||+++|.+|+|++.++++.+.+..++.  +.|++++++
T Consensus         1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~~~~~l~~   80 (99)
T d1f0ya1           1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNK   80 (99)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGCCCHHHHH
T ss_pred             CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccCCCHHHHH
Confidence            89999999999999999999997 9999999998 8999999999999999999999999999987763  467889999


Q ss_pred             HHHCCCCCccCCceeeeec
Q 009395          406 MQEDKRAGETTRKGFYLYD  424 (535)
Q Consensus       406 ~~~~G~~G~k~g~GFY~y~  424 (535)
                      |+++|++|+|||+|||+|.
T Consensus        81 mv~~g~lG~ksg~GfY~Y~   99 (99)
T d1f0ya1          81 LVAENKFGKKTGEGFYKYK   99 (99)
T ss_dssp             HHHTTCCBTTTTBSSSBCC
T ss_pred             HHHcCCCcccCCCcccccC
Confidence            9999999999999999994

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.79  E-value=2.6e-18  Score=154.29  Aligned_cols=153  Identities=14%  Similarity=0.153  Sum_probs=118.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +||+|||+|.||++||..|.++|++|++||++++.++.+.           +.|.+.           ...++.+.+++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~-----------~~~~~~-----------~~~~~~~~~~~~   58 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-----------ERQLVD-----------EAGQDLSLLQTA   58 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGGTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHH-----------Hhhccc-----------eeeeeccccccc
Confidence            5899999999999999999999999999999999877654           233221           234567889999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC------------CCCEE
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH------------VMPLL  295 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~------------~~~lv  295 (535)
                      |+||.|+|.  ....++++++.+.+++++++++.+|.. ............++++.||+.++.            ....+
T Consensus        59 DiIilavp~--~~~~~vl~~l~~~l~~~~iv~~~~s~~-~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~  135 (165)
T d2f1ka2          59 KIIFLCTPI--QLILPTLEKLIPHLSPTAIVTDVASVK-TAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY  135 (165)
T ss_dssp             SEEEECSCH--HHHHHHHHHHGGGSCTTCEEEECCSCC-HHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred             ccccccCcH--hhhhhhhhhhhhhcccccceeeccccc-hHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeE
Confidence            999999984  467889999999999999887665543 322222222234789999986432            13456


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEEe
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIVV  325 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~v  325 (535)
                      .+++...++++.++.+.++++.+|.+++.|
T Consensus       136 il~~~~~~~~~~~~~v~~l~~~lG~~v~~c  165 (165)
T d2f1ka2         136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLC  165 (165)
T ss_dssp             EEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence            688888999999999999999999987764

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.73  E-value=2.4e-18  Score=138.28  Aligned_cols=84  Identities=19%  Similarity=0.324  Sum_probs=77.6

Q ss_pred             cchhhhhHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCh---hHHHHHHHhchHHHHHHHHHHHHhCCCCCccCccH
Q 009395          330 GFAVNRMFFPYTQAAFLLVERGT--DLYLIDRAIT-KFGMPM---GPFRLADLVGFGVAIATGMQFIENFPERTYKSMII  403 (535)
Q Consensus       330 G~i~nri~~~~~~ea~~l~~~G~--~~~~ID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~~~~~~~~~~l  403 (535)
                      ..|+||++++++|||++++++|+  +++|||.++. ++|||+   |||+++|.+|++++.++++.+ .++++++.|+++|
T Consensus         5 ~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l-~~~g~r~~p~~~L   83 (95)
T d1wdka2           5 EDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYHPTAKL   83 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHH-HhhCCCCCCCHHH
Confidence            34899999999999999999996  8999999999 999999   999999999999999999887 5688888899999


Q ss_pred             HHHHHCCCCCccCCceee
Q 009395          404 PIMQEDKRAGETTRKGFY  421 (535)
Q Consensus       404 ~~~~~~G~~G~k~g~GFY  421 (535)
                      ++|+++       |+|||
T Consensus        84 ~~~~~~-------g~~Fy   94 (95)
T d1wdka2          84 REMAKN-------GQSFF   94 (95)
T ss_dssp             HHHHHT-------TCCSC
T ss_pred             HHHHHh-------CcCCC
Confidence            999866       47999

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.72  E-value=9.7e-17  Score=144.63  Aligned_cols=152  Identities=15%  Similarity=0.160  Sum_probs=116.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc--
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--  222 (535)
                      |+||+|||+|.||++||+.|.++|+  +|+.||++++.++.+.           +.+.+.           ...++.+  
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~-----------~~~~~~-----------~~~~~~~~~   58 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-----------DLGIID-----------EGTTSIAKV   58 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-----------HTTSCS-----------EEESCGGGG
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH-----------Hhhcch-----------hhhhhhhhh
Confidence            5689999999999999999999996  7899999999887654           233221           1122322  


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc--HHHHHhhcCCCCcEEeecccCCCC----------
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH----------  290 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~----------  290 (535)
                      ...++|+||.|+|.  ....+++.++.+++++++++++.+|+..  ...+...+  +.+|++.||+....          
T Consensus        59 ~~~~~dlIila~p~--~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~  134 (171)
T d2g5ca2          59 EDFSPDFVMLSSPV--RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDN  134 (171)
T ss_dssp             GGTCCSEEEECSCH--HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSS
T ss_pred             hccccccccccCCc--hhhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHH
Confidence            34589999999984  4567889999999999999988887543  23444444  45899999985321          


Q ss_pred             --CCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEE
Q 009395          291 --VMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV  324 (535)
Q Consensus       291 --~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~  324 (535)
                        .+..+.+++...++++.++.+++|++.+|..++.
T Consensus       135 Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~  170 (171)
T d2g5ca2         135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY  170 (171)
T ss_dssp             TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence              2456778899999999999999999999987764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.70  E-value=1.1e-16  Score=141.51  Aligned_cols=147  Identities=15%  Similarity=0.102  Sum_probs=119.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+|||+|+||.+|+..|.++| ++|.+||+++++++...++          .             .+...++.+++.+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~----------~-------------~~~~~~~~~~v~~   57 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE----------L-------------GVETSATLPELHS   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH----------T-------------CCEEESSCCCCCT
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh----------c-------------ccccccccccccc
Confidence            58999999999999999998887 8999999999987665321          1             2344567788899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCCEEE-EEeCCCCCH
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMPLLE-IVRTNQTSP  305 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~lve-iv~~~~ts~  305 (535)
                      ||+||.||+  +....++++++   .+.+.+++|..++++++.+++.++...++++.+|+.|......+. ++.+...++
T Consensus        58 ~Div~lavk--P~~~~~v~~~l---~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~  132 (152)
T d1yqga2          58 DDVLILAVK--PQDMEAACKNI---RTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE  132 (152)
T ss_dssp             TSEEEECSC--HHHHHHHHTTC---CCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred             cceEEEecC--HHHHHHhHHHH---hhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence            999999996  44445555444   345778899999999999999988778899999999998776555 557777899


Q ss_pred             HHHHHHHHHHHhcCCce
Q 009395          306 QVIVDLLDIGKKIKKTP  322 (535)
Q Consensus       306 e~~~~~~~l~~~lGk~~  322 (535)
                      +..+.+.+++..+|+..
T Consensus       133 ~~~~~v~~l~~~~G~~~  149 (152)
T d1yqga2         133 TDRRIADRIMKSVGLTV  149 (152)
T ss_dssp             HHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHhCCCEE
Confidence            99999999999999654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.68  E-value=1.9e-16  Score=139.72  Aligned_cols=145  Identities=17%  Similarity=0.121  Sum_probs=116.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      +||+|||+|+||++|+..|.++|++|++|++++++.+...+.          .|             +..+.+. +.+++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~~~~~~   57 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ----------LA-------------LPYAMSHQDLIDQ   57 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH----------HT-------------CCBCSSHHHHHHT
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccc----------cc-------------eeeechhhhhhhc
Confidence            589999999999999999999999999999999887654321          11             2233344 45789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCCCCC-EEEEEeCCCCCH
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAHVMP-LLEIVRTNQTSP  305 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~~~~-lveiv~~~~ts~  305 (535)
                      ||+||.||++  +...++    .+.+.++.+++|.+++++++++.+.++...+++..||+.|+.... ...+..+..+++
T Consensus        58 ~dvIilavkp--~~~~~v----l~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~  131 (152)
T d2ahra2          58 VDLVILGIKP--QLFETV----LKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ  131 (152)
T ss_dssp             CSEEEECSCG--GGHHHH----HTTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred             cceeeeecch--HhHHHH----hhhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence            9999999963  343444    445678888999999999999999887777899999988877654 455667888899


Q ss_pred             HHHHHHHHHHHhcCCc
Q 009395          306 QVIVDLLDIGKKIKKT  321 (535)
Q Consensus       306 e~~~~~~~l~~~lGk~  321 (535)
                      +..+.++++++.+|+.
T Consensus       132 ~~~~~v~~l~~~~G~~  147 (152)
T d2ahra2         132 ELQARVRDLTDSFGST  147 (152)
T ss_dssp             HHHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHHhCCCE
Confidence            9999999999999964

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.62  E-value=2.6e-16  Score=155.30  Aligned_cols=135  Identities=22%  Similarity=0.307  Sum_probs=108.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcc-cCCCC-CchHHHHHHHHHHHHHHHh-C
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYK-TDKIE-PLGEAREIFKFARAQARKQ-A   77 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~-~   77 (535)
                      |+|+|++++|+||+++||||+|||+++|++.+.+++++++..+.++.+.... ..... +.......+...++.+.++ .
T Consensus       167 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (310)
T d1wdka4         167 WIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAG  246 (310)
T ss_dssp             HHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhhhhhhhcc
Confidence            5789999999999999999999999999999999999999864333222211 11111 1112233455566666665 4


Q ss_pred             CCCCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCC
Q 009395           78 PNLTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP  135 (535)
Q Consensus        78 ~~~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~  135 (535)
                      ++|||+.+++++|+.+...+++++|+.|++.|.+++.|+++++++++|++||.++|..
T Consensus       247 ~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~a  304 (310)
T d1wdka4         247 PNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKA  304 (310)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCC
Confidence            5899999999999999999999999999999999999999999999999999888753

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.60  E-value=1.8e-15  Score=134.87  Aligned_cols=151  Identities=17%  Similarity=0.224  Sum_probs=107.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      +||+|||+|.||.+||..|+++|++|++||+++++++...           +.+             .....+. +.+++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~-----------~~~-------------~~~~~~~~e~~~~   56 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-----------AAG-------------AETASTAKAIAEQ   56 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEECSSHHHHHHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHH-----------Hhh-------------hhhcccHHHHHhC
Confidence            5899999999999999999999999999999999877653           222             1122333 45789


Q ss_pred             CCEEEEeccCChHHHHHHH--HHHHhhcCCCceeeecCCcCcHH---HHHhhc-CCCCcEEeecccC-C--CCCCCEEEE
Q 009395          227 VDMVIEAIIENVSLKQQIF--ADLEKYCPPHCILASNTSTIDLN---LIGERT-YSKDRIVGAHFFS-P--AHVMPLLEI  297 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~--~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~-~~~~r~ig~h~~~-P--~~~~~lvei  297 (535)
                      ||+||.|||++.++...++  ..+.+.+.+++++++.++ .+++   ++++.+ ....+|+...... |  +..+.+..+
T Consensus        57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT-~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~  135 (161)
T d1vpda2          57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSS-IAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVM  135 (161)
T ss_dssp             CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCC-CCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEE
Confidence            9999999997766554444  347888889998876444 4444   334444 2234555543332 1  123567767


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       298 v~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      +.+   +++.++.++++++.+|+..++++
T Consensus       136 ~gG---~~~~~~~~~~il~~~~~~i~~~G  161 (161)
T d1vpda2         136 VGG---DKAIFDKYYDLMKAMAGSVVHTG  161 (161)
T ss_dssp             EES---CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             EcC---CHHHHHHHHHHHHHhcCceEECC
Confidence            776   68999999999999999888764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.58  E-value=1e-14  Score=128.56  Aligned_cols=140  Identities=21%  Similarity=0.219  Sum_probs=107.1

Q ss_pred             CCCCcceEEEEe-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          143 APRRVKKVAILG-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       143 ~~~~~~kV~vIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      ++..++||+||| +|.||++||..|.++||+|++||++++....                                    
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~------------------------------------   48 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE------------------------------------   48 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH------------------------------------
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc------------------------------------
Confidence            345689999999 8999999999999999999999998654221                                    


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc--HHHHHhhcCCCCcEEeecccCCCC----CCCEE
Q 009395          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID--LNLIGERTYSKDRIVGAHFFSPAH----VMPLL  295 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~--~~~l~~~~~~~~r~ig~h~~~P~~----~~~lv  295 (535)
                      +.+.++|+++.++|..  ....++.++.+.+++++++++.+|+.+  ...+.+.  .+.+|++.||+..+.    ....+
T Consensus        49 ~~~~~~~~v~~~~~~~--~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g~~~  124 (152)
T d2pv7a2          49 SILANADVVIVSVPIN--LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAKQVV  124 (152)
T ss_dssp             HHHTTCSEEEECSCGG--GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTTCEE
T ss_pred             hhhhhccccccccchh--hheeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCCcEE
Confidence            1246789999999854  456788999999999999887666432  2334343  356899999986443    24566


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCceEE
Q 009395          296 EIVRTNQTSPQVIVDLLDIGKKIKKTPIV  324 (535)
Q Consensus       296 eiv~~~~ts~e~~~~~~~l~~~lGk~~i~  324 (535)
                      .++++.  +++.++.+.++++.+|.+++.
T Consensus       125 v~~~g~--~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         125 VRCDGR--FPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             EEEEEE--CGGGTHHHHHHHHHTTCEEEE
T ss_pred             EEecCC--CHHHHHHHHHHHHHhCCEEEe
Confidence            666663  567789999999999988764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.54  E-value=2.2e-14  Score=127.76  Aligned_cols=152  Identities=16%  Similarity=0.212  Sum_probs=106.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      |+||+|||+|.||++||.+|+++||+|.+||+++++.+.+.           +.+.            ....+..+.+..
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~-----------~~~~------------~~~~~~~e~~~~   57 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLV-----------AAGA------------SAARSARDAVQG   57 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTTC------------EECSSHHHHHTS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhh-----------hhhc------------cccchhhhhccc
Confidence            57899999999999999999999999999999999876543           2221            112222356889


Q ss_pred             CCEEEEeccCChHHHHHHHH---HHHhhcCCCceeeecCCcCcHH---HHHhhc-CCCCcEEeecccC-CC--CCCCEEE
Q 009395          227 VDMVIEAIIENVSLKQQIFA---DLEKYCPPHCILASNTSTIDLN---LIGERT-YSKDRIVGAHFFS-PA--HVMPLLE  296 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~---~l~~~~~~~~ii~s~tS~~~~~---~l~~~~-~~~~r~ig~h~~~-P~--~~~~lve  296 (535)
                      +|+|+.|+|.+... ++++.   .+.+.+.++.+++. +|+..++   ++++.+ ....+|+..+... |.  ..+.++-
T Consensus        58 ~diii~~v~~~~~~-~~v~~~~~~~~~~l~~g~iiid-~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~  135 (162)
T d3cuma2          58 ADVVISMLPASQHV-EGLYLDDDGLLAHIAPGTLVLE-CSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTF  135 (162)
T ss_dssp             CSEEEECCSCHHHH-HHHHHSTTCHHHHSCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEE
T ss_pred             cCeeeecccchhhH-HHHHhccccccccCCCCCEEEE-CCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEE
Confidence            99999999976554 45554   36677888887764 4455554   344444 2234555543322 21  2356777


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      ++.|   ++++++.++++++.+|+..++++
T Consensus       136 ~~gG---~~~~~~~~~~il~~~~~~v~~~G  162 (162)
T d3cuma2         136 MVGG---DAEALEKARPLFEAMGRNIFHAG  162 (162)
T ss_dssp             EEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             EecC---CHHHHHHHHHHHHHHcCccEECc
Confidence            7776   68899999999999999888764

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.54  E-value=3.5e-15  Score=119.55  Aligned_cols=68  Identities=25%  Similarity=0.457  Sum_probs=61.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhh---hhcCcchHHHHHHHHHh
Q 009395          457 LSEKDIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTF---IHRGFSKSSSCFKNLLC  524 (535)
Q Consensus       457 ~~~~~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~---~~~G~~~~~~~~~~~~~  524 (535)
                      +++++|+||++.+++|||++|++|||+.+++|||.++++|+|||+++|||+   |.+|+|+++++++.+.+
T Consensus         2 ~~d~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~~   72 (95)
T d1wdka2           2 VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAE   72 (95)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHHh
Confidence            578999999999999999999999998899999999999999999666666   56999999999998743

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.52  E-value=4.4e-16  Score=146.06  Aligned_cols=203  Identities=15%  Similarity=0.132  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeCCh--hhHHHHH------HHHhCCCcEEEEeCCHHHH-HHH
Q 009395          116 ETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGL--MGSGIAT------ALILSNYPVILKEVNEKFL-EAG  186 (535)
Q Consensus       116 ~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~G~--mG~~iA~------~l~~~G~~V~l~d~~~~~~-~~~  186 (535)
                      .++..++..|..-....|..+.+.    .....++.++|+|+  ||.+|+.      +|++.|+.|++.|.+++.. +..
T Consensus        13 ~~~a~gi~~f~~~~~~~~~~~~~~----~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~   88 (242)
T d2b0ja2          13 THAAAGITNFMRACEVAKEVGKPE----IALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAH   88 (242)
T ss_dssp             HHHHHSSCCCHHHHHHHHHHTCGG----GGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHH
T ss_pred             chhhhccHHHHHHHhhhccCCCCc----cceeeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHH
Confidence            345566666654433333222111    12245688999997  8989988      7899999999999997764 433


Q ss_pred             HHH----HHHHH----HHHHHcCCCCHHHHH----hhhcccccccCc-ccccCCCEEEEeccCChHHHHHHHHHHHhhcC
Q 009395          187 IGR----VRANL----QSRVKKGKMTQEKFE----KTISLLTGVLDY-ESFKDVDMVIEAIIENVSLKQQIFADLEKYCP  253 (535)
Q Consensus       187 ~~~----i~~~~----~~~~~~g~~~~~~~~----~~~~~i~~~~~~-~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~  253 (535)
                      .+.    +...+    .+..+....++...-    ..-..++.++|. +.+++||+||+|+|+. +.+.+++++|.++++
T Consensus        89 ~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I~~~l~  167 (242)
T d2b0ja2          89 LSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKFADAIP  167 (242)
T ss_dssp             HTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHHGGGSC
T ss_pred             hcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHHHhhCC
Confidence            321    22222    222232221110000    000113334444 6789999999999965 667899999999999


Q ss_pred             CCceeeecCCcCcHH---HHHhhcC-CCCcEEeecccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEEe
Q 009395          254 PHCILASNTSTIDLN---LIGERTY-SKDRIVGAHFFSPAHVMPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIVV  325 (535)
Q Consensus       254 ~~~ii~s~tS~~~~~---~l~~~~~-~~~r~ig~h~~~P~~~~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~v  325 (535)
                      +++|+++.+ |+++.   ++.+.+. .+.++++.||++++.......++.+ ..++|.++.+.++++.+|+.++++
T Consensus       168 ~g~Iiid~S-Ti~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         168 EGAIVTHAC-TIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             TTCEEEECS-SSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCcEEEecC-CCcHHHHHHHHHhcccCCCEEECCCccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence            999886544 44443   4555554 3568999999998776555554433 578999999999999999998876

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.7e-14  Score=115.26  Aligned_cols=68  Identities=24%  Similarity=0.314  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcCC
Q 009395          461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQG  529 (535)
Q Consensus       461 ~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~  529 (535)
                      +|+||++.+++|||++|++||++ +|+|||.+++.++|||++|+.++|.+|+|+..++++++.+..+++
T Consensus         2 Fi~NRil~~~~~ea~~ll~eG~a-~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~   69 (99)
T d1f0ya1           2 FIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAEN   69 (99)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTC
T ss_pred             eehHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccc
Confidence            58999999999999999999998 999999999999999999999999999999999999998877654

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.3e-13  Score=132.30  Aligned_cols=96  Identities=14%  Similarity=0.170  Sum_probs=87.6

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|++|+++||||+|||++++.+++.+++++++..+ |                                   
T Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~-~-----------------------------------  205 (258)
T d2fw2a1         162 MLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYN-A-----------------------------------  205 (258)
T ss_dssp             HHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             hhccCcccccccccccccccccccccccccccchhhhhhhhhh-H-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.....+++++++.|.+.|..++.|+|+++++.+|++||+|+
T Consensus       206 ~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~  257 (258)
T d2fw2a1         206 IVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDE  257 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence            1566788999988888899999999999999999999999999999999875

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=99.36  E-value=3e-13  Score=130.54  Aligned_cols=99  Identities=16%  Similarity=0.198  Sum_probs=90.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||+.++|+||+++||||+|||++++.+.|.++|++++..+ |                                   
T Consensus       164 l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  207 (269)
T d1nzya_         164 LMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAP-T-----------------------------------  207 (269)
T ss_dssp             HHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             ccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhh-H-----------------------------------
Confidence            4789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKVP  135 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~~  135 (535)
                      .+...+|+.++++...+++++++.|.+.+..++.++++++++.+|++||++++.+
T Consensus       208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~  262 (269)
T d1nzya_         208 HLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQ  262 (269)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCC
Confidence            2566789999999889999999999999999999999999999999999997743

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=5.4e-13  Score=127.47  Aligned_cols=96  Identities=22%  Similarity=0.314  Sum_probs=88.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|+|++++.+.+.+++++++..+ |                                   
T Consensus       157 l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~-~-----------------------------------  200 (253)
T d1uiya_         157 LLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNA-P-----------------------------------  200 (253)
T ss_dssp             HHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HhhcCcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccc-h-----------------------------------
Confidence            5789999999999999999999999999999999999998853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTS  132 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~  132 (535)
                      .+...+|++++.....++++++..|...+..++.|+|+++++++|++||+|+
T Consensus       201 ~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~  252 (253)
T d1uiya_         201 TSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPR  252 (253)
T ss_dssp             HHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCC
Confidence            2666789999999999999999999999999999999999999999998775

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.6e-13  Score=128.33  Aligned_cols=102  Identities=20%  Similarity=0.243  Sum_probs=84.2

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++.+++.++|.++++.-..                                .++
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~--------------------------------~~p  210 (266)
T d1hzda_         163 LIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLP--------------------------------QGP  210 (266)
T ss_dssp             HHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTT--------------------------------SCH
T ss_pred             hhccCCccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhccc--------------------------------CCh
Confidence            478999999999999999999999988776666666554442000                                111


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .|...+|++++.+...+++++++.|.+.|..++.|+|+++++.+|++||+|+..
T Consensus       211 ~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~  264 (266)
T d1hzda_         211 VAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK  264 (266)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence            367789999999998999999999999999999999999999999999987653

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=1.4e-12  Score=124.96  Aligned_cols=97  Identities=21%  Similarity=0.241  Sum_probs=89.3

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|++++++.+.+.+++.+++..+ |                                   
T Consensus       161 l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~-~-----------------------------------  204 (260)
T d1mj3a_         161 MVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNS-K-----------------------------------  204 (260)
T ss_dssp             HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSC-H-----------------------------------
T ss_pred             HHHcCcccCchhhccCCCceeeecccccccccccccccccchh-h-----------------------------------
Confidence            5789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .|...+|++++.....+++++++.|.+.|..++.|+|+++++++|++||+|+.
T Consensus       205 ~a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f  257 (260)
T d1mj3a_         205 IIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANF  257 (260)
T ss_dssp             HHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence            26678999999999999999999999999999999999999999999998765

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=1.3e-12  Score=125.55  Aligned_cols=96  Identities=16%  Similarity=0.062  Sum_probs=83.9

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|||++++++.+.++|++++..+ |                                   
T Consensus       167 l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  210 (263)
T d1wz8a1         167 HLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGP-K-----------------------------------  210 (263)
T ss_dssp             HHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             hcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccH-H-----------------------------------
Confidence            5789999999999999999999999999999999999999863 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .+...+|++++....... ..++.|...+..++.|+|+++++++|++||+|+.
T Consensus       211 ~al~~~K~~l~~~~~~~~-~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~f  262 (263)
T d1wz8a1         211 EALHHTKHALNHWYRSFL-PHFELSLALEFLGFSGKELEEGLKALKEKRPPEF  262 (263)
T ss_dssp             HHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCCC
Confidence            256678888888776544 5688999999999999999999999999998763

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=2.7e-12  Score=112.66  Aligned_cols=142  Identities=7%  Similarity=-0.065  Sum_probs=91.9

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCCE
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVDM  229 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl  229 (535)
                      |+|||+|+||.+|+..|.+.++.+.+|+|++++++...+           .+           + ....+..+.++.||+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~-----------~~-----------~-~~~~~~~~~~~~~Di   58 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAE-----------VY-----------G-GKAATLEKHPELNGV   58 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHH-----------HT-----------C-CCCCSSCCCCC---C
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhh-----------cc-----------c-ccccchhhhhccCcE
Confidence            789999999999999886655556799999999876542           11           1 123344567899999


Q ss_pred             EEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHhhcCCCCcEEeecccCCCC--------CCCEEEEEeCC
Q 009395          230 VIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGERTYSKDRIVGAHFFSPAH--------VMPLLEIVRTN  301 (535)
Q Consensus       230 VI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~~~~~~~r~ig~h~~~P~~--------~~~lveiv~~~  301 (535)
                      ||.|||++  ...+++.++   ..++.++++.+++.+.+.+..     ....+.||+.+..        ....+..+.+ 
T Consensus        59 Vil~v~d~--~i~~v~~~l---~~~~~ivi~~s~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-  127 (153)
T d2i76a2          59 VFVIVPDR--YIKTVANHL---NLGDAVLVHCSGFLSSEIFKK-----SGRASIHPNFSFSSLEKALEMKDQIVFGLEG-  127 (153)
T ss_dssp             EEECSCTT--THHHHHTTT---CCSSCCEEECCSSSCGGGGCS-----SSEEEEEECSCC--CTTGGGCGGGCCEEECC-
T ss_pred             EEEeccch--hhhHHHhhh---cccceeeeecccchhhhhhhh-----hccccceeeeecccccchhhhccCcEEEEeC-
Confidence            99999965  234454443   246788888777777655432     3346778764221        1223334444 


Q ss_pred             CCCHHHHHHHHHHHHhcCCceEEeCC
Q 009395          302 QTSPQVIVDLLDIGKKIKKTPIVVGN  327 (535)
Q Consensus       302 ~ts~e~~~~~~~l~~~lGk~~i~v~d  327 (535)
                        +++.++.++++++.+|..++.+.+
T Consensus       128 --d~~~~~~~~~l~~~lG~~~~~i~~  151 (153)
T d2i76a2         128 --DERGLPIVKKIAEEISGKYFVIPS  151 (153)
T ss_dssp             --CTTTHHHHHHHHHHHCSCEEECCG
T ss_pred             --CHHHHHHHHHHHHHHCCcEEEeCC
Confidence              567889999999999998888763

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.28  E-value=7.2e-12  Score=112.68  Aligned_cols=154  Identities=10%  Similarity=0.026  Sum_probs=99.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      .+|+|||+|.||.+||..|+++||+|++|||++++++...+           .+....    .........+..+.+.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~~~~~~----~~~~a~~~~~~~~~~~~~   67 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA-----------NEAKGT----KVLGAHSLEEMVSKLKKP   67 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH-----------TTTTTS----SCEECSSHHHHHHHBCSS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------hccccc----cccchhhhhhhhhhhccc
Confidence            47999999999999999999999999999999999876542           111000    000000011122457889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhc-CCCCcEEeecccCC---CCCCCEEEEEeC
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERT-YSKDRIVGAHFFSP---AHVMPLLEIVRT  300 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~-~~~~r~ig~h~~~P---~~~~~lveiv~~  300 (535)
                      |.+|.++|....+ .+++..+.+.++++.+++..+ |..+.   ++++.+ ....+++.......   +..+. ..++.|
T Consensus        68 ~~ii~~~~~~~~v-~~v~~~l~~~~~~g~iiid~s-T~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG  144 (176)
T d2pgda2          68 RRIILLVKAGQAV-DNFIEKLVPLLDIGDIIIDGG-NSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGG  144 (176)
T ss_dssp             CEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEECS-CCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEE
T ss_pred             ceEEEecCchHHH-HHHHHHHHhccccCcEEEecC-cchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCC
Confidence            9999999977554 567888999999999887544 44443   333333 22233443322111   11133 334455


Q ss_pred             CCCCHHHHHHHHHHHHhcCCce
Q 009395          301 NQTSPQVIVDLLDIGKKIKKTP  322 (535)
Q Consensus       301 ~~ts~e~~~~~~~l~~~lGk~~  322 (535)
                         +++.++.++++++.++...
T Consensus       145 ---~~~~~~~~~~il~~~~~kv  163 (176)
T d2pgda2         145 ---NKEAWPHIKAIFQGIAAKV  163 (176)
T ss_dssp             ---CTTTHHHHHHHHHHHSCBC
T ss_pred             ---CHHHHHHHHHHHHHHhccc
Confidence               5678899999999999764

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=3e-12  Score=123.81  Aligned_cols=97  Identities=16%  Similarity=0.137  Sum_probs=85.0

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCc-hHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQ-LVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPN   79 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~-l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (535)
                      |+++|++++|+||+++||||+|+|+++ +.+++.+++.+++..+ |                                  
T Consensus       172 ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~-p----------------------------------  216 (275)
T d1dcia_         172 LTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS-P----------------------------------  216 (275)
T ss_dssp             HHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC-H----------------------------------
T ss_pred             ccccccccchhhhccCCCceeeeehhhhhhhccccccccccccc-H----------------------------------
Confidence            467899999999999999999998765 5677788999999863 2                                  


Q ss_pred             CCcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           80 LTHPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        80 ~~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                       .|...+|+.++.+...+++++++.|...+..++.|+|+++++++|++||+++-
T Consensus       217 -~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~  269 (275)
T d1dcia_         217 -VAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKS  269 (275)
T ss_dssp             -HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGG
T ss_pred             -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence             26667899999999889999999999999999999999999999999987653

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.23  E-value=1e-11  Score=108.94  Aligned_cols=148  Identities=14%  Similarity=0.076  Sum_probs=92.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +||+|||+|.||.+||..|+++|++|++||+++.........         ..+             + ..+..+.+++|
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~---------~~~-------------~-~~~~~e~~~~~   57 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR---------TVG-------------V-TETSEEDVYSC   57 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH---------HHT-------------C-EECCHHHHHTS
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh---------ccc-------------c-cccHHHHHhhc
Confidence            589999999999999999999999999999887665433210         000             1 11223557899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC--CcCcHHHHHhhcCCCCcEEeecccCCCC--CCCEEEEEeCCCC
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT--STIDLNLIGERTYSKDRIVGAHFFSPAH--VMPLLEIVRTNQT  303 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t--S~~~~~~l~~~~~~~~r~ig~h~~~P~~--~~~lveiv~~~~t  303 (535)
                      |+||.|||.+..  .+++.++.....  .+++..+  +.-...++++.+. ..+++....+.++.  ......++.|+. 
T Consensus        58 diIi~~v~~~~~--~~~~~~~~~~~~--~~~id~st~~p~~~~~l~~~~~-~~~~~d~~v~g~~~~~~~~~~~~~~G~~-  131 (152)
T d1i36a2          58 PVVISAVTPGVA--LGAARRAGRHVR--GIYVDINNISPETVRMASSLIE-KGGFVDAAIMGSVRRKGADIRIIASGRD-  131 (152)
T ss_dssp             SEEEECSCGGGH--HHHHHHHHTTCC--SEEEECSCCCHHHHHHHHHHCS-SSEEEEEEECSCHHHHGGGCEEEEESTT-
T ss_pred             CeEEEEecCchH--HHHHHhhcccCC--ceeeccCcCCHHHHHHHHHHHh-ccCCCcccccCCcccccCCcEEEEECCC-
Confidence            999999997643  355556665543  3343322  2223346666664 34577666655432  122334566653 


Q ss_pred             CHHHHHHHHHHHHhcCCceEEeCCcc
Q 009395          304 SPQVIVDLLDIGKKIKKTPIVVGNCT  329 (535)
Q Consensus       304 s~e~~~~~~~l~~~lGk~~i~v~d~~  329 (535)
                       .+.++    .+..+|.....+++.|
T Consensus       132 -~~~~~----~l~~~g~~i~~~G~~P  152 (152)
T d1i36a2         132 -AEEFM----KLNRYGLNIEVRGREP  152 (152)
T ss_dssp             -HHHHH----GGGGGTCEEEECSSST
T ss_pred             -HHHHH----HHHHcCCeeeEcCCCC
Confidence             34333    3688998888887655

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.22  E-value=5.3e-11  Score=107.02  Aligned_cols=154  Identities=13%  Similarity=0.082  Sum_probs=101.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc----cc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY----ES  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----~~  223 (535)
                      +||+|||+|.||.+||..|+++||+|++||+++++.+...+           .+.....     ........+.    ..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~-----------~~~~~~~-----~~~~~~~~~~~~~~~~   65 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMK-----------ANASAPF-----AGNLKAFETMEAFAAS   65 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-----------HTTTSTT-----GGGEEECSCHHHHHHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cCCcccc-----ccchhhhhhhhHHHHh
Confidence            57999999999999999999999999999999999876542           2211100     0011111111    23


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhc-CCCCcEEeecccCCC---CCCCEEE
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERT-YSKDRIVGAHFFSPA---HVMPLLE  296 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~-~~~~r~ig~h~~~P~---~~~~lve  296 (535)
                      +..++.++++++....+ ..++..+...+.++.+++..+ +..+.   .+++.+ .....++....+..+   .... ..
T Consensus        66 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iii~~s-t~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~  142 (178)
T d1pgja2          66 LKKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTG-NAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AF  142 (178)
T ss_dssp             BCSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECC-CCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EE
T ss_pred             cccceEEEEeecCcchh-hhhhhhhhhhccccceecccC-ccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EE
Confidence            56788899998876544 466677888888888776544 44433   344444 334456655443321   1222 33


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCceE
Q 009395          297 IVRTNQTSPQVIVDLLDIGKKIKKTPI  323 (535)
Q Consensus       297 iv~~~~ts~e~~~~~~~l~~~lGk~~i  323 (535)
                      ++.|   ++++++.++++++.+++.+.
T Consensus       143 mvgG---~~~~~~~v~pil~~~~~~~~  166 (178)
T d1pgja2         143 FPGG---TLSVWEEIRPIVEAAAAKAD  166 (178)
T ss_dssp             EEEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred             EeeC---CHHHHHHHHHHHHHHhcccc
Confidence            5555   68999999999999998765

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=2e-11  Score=107.50  Aligned_cols=143  Identities=15%  Similarity=0.160  Sum_probs=100.0

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDVD  228 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aD  228 (535)
                      ||+|||+|.||.+||.+|+++|+.| +|+++.++.....+.          .+              ......+.+.++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~----------~~--------------~~~~~~~~~~~~~   56 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEE----------FG--------------SEAVPLERVAEAR   56 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHH----------HC--------------CEECCGGGGGGCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHH----------cC--------------Cccccccccccee
Confidence            7999999999999999999999865 677777665443211          01              1123456678899


Q ss_pred             EEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH---HHHhhcCCCCcEEeeccc-CCCC-------CCCEEEE
Q 009395          229 MVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN---LIGERTYSKDRIVGAHFF-SPAH-------VMPLLEI  297 (535)
Q Consensus       229 lVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~---~l~~~~~~~~r~ig~h~~-~P~~-------~~~lvei  297 (535)
                      ++|.++|.+.++ ..+...+.+...++.+++. +||.+++   ++++.+..    .|.+|. .|+.       .+.|..+
T Consensus        57 ~~i~~~~~~~~v-~~~~~~l~~~~~~~~~iid-~sT~~p~~~~~~~~~~~~----~gi~~ldapVsGg~~~A~~G~L~~~  130 (156)
T d2cvza2          57 VIFTCLPTTREV-YEVAEALYPYLREGTYWVD-ATSGEPEASRRLAERLRE----KGVTYLDAPVSGGTSGAEAGTLTVM  130 (156)
T ss_dssp             EEEECCSSHHHH-HHHHHHHTTTCCTTEEEEE-CSCCCHHHHHHHHHHHHT----TTEEEEECCEESHHHHHHHTCEEEE
T ss_pred             EEEecccchhhh-hhhhccccccccccccccc-cccCCHHHHHHHHHHHHH----cCCeEEeccccCchhhhccCCEEEE
Confidence            999999976554 4566778888888887764 5555554   44444422    144444 2432       3567777


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCceEEeC
Q 009395          298 VRTNQTSPQVIVDLLDIGKKIKKTPIVVG  326 (535)
Q Consensus       298 v~~~~ts~e~~~~~~~l~~~lGk~~i~v~  326 (535)
                      +.|   ++++++.+++++ .+++.+++++
T Consensus       131 vgG---~~~~~~~~~p~L-~~~~~v~~~G  155 (156)
T d2cvza2         131 LGG---PEEAVERVRPFL-AYAKKVVHVG  155 (156)
T ss_dssp             EES---CHHHHHHHGGGC-TTEEEEEEEE
T ss_pred             EeC---CHHHHHHHHHHH-HhcCcCEEeC
Confidence            777   689999999998 4888888875

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=4.7e-12  Score=121.37  Aligned_cols=98  Identities=18%  Similarity=0.228  Sum_probs=81.6

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|+.++|+||+++||||+|||++++.+.+.++|++++..+ |                                   
T Consensus       160 ~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~-~-----------------------------------  203 (261)
T d1ef8a_         160 LIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKA-P-----------------------------------  203 (261)
T ss_dssp             HHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             ccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcC-c-----------------------------------
Confidence            4789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChH--HHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCCC
Q 009395           81 THPIVCIDVVEAGVVSGPR--AGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSKV  134 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~--~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~~  134 (535)
                      .+...+|+.++........  ..++.+...+..++.|+|+++++.+|++||+|+..
T Consensus       204 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~f~  259 (261)
T d1ef8a_         204 LAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFV  259 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCcCC
Confidence            2566788888887665443  34555567788899999999999999999987643

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=9.1e-12  Score=121.66  Aligned_cols=96  Identities=17%  Similarity=0.187  Sum_probs=81.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|+||+++||||+|||++++++.+.+++++++..+ |                                   
T Consensus       195 llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~-~-----------------------------------  238 (297)
T d1q52a_         195 IFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKS-P-----------------------------------  238 (297)
T ss_dssp             HHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             ccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999852 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcccCCC
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVHIFFAQRGTSK  133 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~aF~~kr~~~~  133 (535)
                      .|...+|++++... .++.+....|.+.+..++.|+|++|++++|++||+|+.
T Consensus       239 ~a~~~~K~~~~~~~-~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f  290 (297)
T d1q52a_         239 QAQRMLKFAFNLLD-DGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDW  290 (297)
T ss_dssp             HHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHhh-cChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCC
Confidence            15556788877644 34555566788889999999999999999999988765

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.18  E-value=4.7e-12  Score=106.56  Aligned_cols=65  Identities=14%  Similarity=0.187  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcCCChhHHHHHHHhccCCCCCcchhhhhcCcchHHHHHHHHHhHhcC
Q 009395          461 DIVEMIFFPVVNEACRVFAEGIAVKAADLDIASVMGMGFPPYRFVTFIHRGFSKSSSCFKNLLCYFDQ  528 (535)
Q Consensus       461 ~i~~r~~~~~~~ea~~~~~~gv~~~~~diD~~~~~g~g~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~  528 (535)
                      ||+|||+.++++||++++++|+  ++++||.++. ++|||++|+.++|++|||+..++.+.+++.+++
T Consensus         2 Fi~NRi~~~~~~ea~~ll~eG~--~~~~ID~a~~-~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~   66 (124)
T d1wdka1           2 FLVNRVLFPYFGGFAKLVSAGV--DFVRIDKVME-KFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPD   66 (124)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHH-HHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHH
T ss_pred             chHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHh-hccCCCCHHHHHHhcchHHHHHHHHHHHHhcCc
Confidence            6899999999999999999996  5999999986 899999999999999999999999999876654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.17  E-value=2.6e-11  Score=110.02  Aligned_cols=155  Identities=15%  Similarity=0.100  Sum_probs=97.0

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHHhhhcccccccCccc
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKK-GKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      +.|+||+|||+|.||.++|..|+++|++|++|+++++.++...+.        ... -.++..   ....++..++++++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~--------~~n~~yl~~~---~l~~~i~~t~~l~~   73 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK--------RENVLFLKGV---QLASNITFTSDVEK   73 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH--------TBCTTTSTTC---BCCTTEEEESCHHH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc--------cccccccccc---ccccccccchhhhh
Confidence            457899999999999999999999999999999999987655421        000 001100   11246777788754


Q ss_pred             -ccCCCEEEEeccCChHHHHHHHHHHHhh-----cCCCceeeecCCcCc------HHHHH-hhcCCCCcEEeecccCCCC
Q 009395          224 -FKDVDMVIEAIIENVSLKQQIFADLEKY-----CPPHCILASNTSTID------LNLIG-ERTYSKDRIVGAHFFSPAH  290 (535)
Q Consensus       224 -~~~aDlVI~avpe~~~~k~~v~~~l~~~-----~~~~~ii~s~tS~~~------~~~l~-~~~~~~~r~ig~h~~~P~~  290 (535)
                       +++||+||.|||.  ...+.+++++.+.     ..++.++++.+-++.      ++++- +.++. .++ +. .-.|..
T Consensus        74 a~~~ad~iiiavPs--~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~-~~~-~v-lsGP~~  148 (189)
T d1n1ea2          74 AYNGAEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPS-PLL-SV-LAGPSF  148 (189)
T ss_dssp             HHTTCSCEEECSCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCG-GGE-EE-EESSCC
T ss_pred             ccCCCCEEEEcCcH--HHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcc-cce-EE-EecCCc
Confidence             7899999999984  4667888877653     345666666655543      33332 22321 121 11 012321


Q ss_pred             ------CCCEEEEEeCCCCCHHHHHHHHHHHHh
Q 009395          291 ------VMPLLEIVRTNQTSPQVIVDLLDIGKK  317 (535)
Q Consensus       291 ------~~~lveiv~~~~ts~e~~~~~~~l~~~  317 (535)
                            ..+...++.+  .+.+..+.+++++..
T Consensus       149 A~Ev~~~~pt~~viAs--~~~~~a~~i~~lfst  179 (189)
T d1n1ea2         149 AIEVATGVFTCVSIAS--ADINVARRLQRIMST  179 (189)
T ss_dssp             HHHHHTTCCEEEEEEC--SSHHHHHHHHHHHSC
T ss_pred             HHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCC
Confidence                  1233334444  367777888887764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.11  E-value=4e-11  Score=108.09  Aligned_cols=100  Identities=20%  Similarity=0.216  Sum_probs=72.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHhhhcccccccCc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMT--QEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~--~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      +||+|||+|.||.++|..|+++|++|++||++++.++...+.           +...  .............+++. +.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~e~~   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR-----------GAIIAEGPGLAGTAHPDLLTSDIGLAV   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-----------TSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-----------CCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence            689999999999999999999999999999999987765421           1000  00000000111223444 458


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeee
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS  260 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s  260 (535)
                      ++||+||.|+|..  ....+++++.+++.++++++.
T Consensus        71 ~~aD~iii~v~~~--~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          71 KDADVILIVVPAI--HHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             TTCSEEEECSCGG--GHHHHHHHHGGGCCTTCEEEE
T ss_pred             cCCCEEEEEEchh--HHHHHHHHhhhccCCCCEEEE
Confidence            9999999999865  457899999999999997654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.01  E-value=4.5e-09  Score=96.13  Aligned_cols=162  Identities=17%  Similarity=0.160  Sum_probs=95.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH--------HHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR--------VRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~--------i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      |||+|||+|.+|.++|.+|+++|++|++||.|++.++...+.        ....+....            ...++..++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~------------~~~~~~~~~   68 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR------------QTGRLSGTT   68 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH------------HTTCEEEES
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhh------------cccccccCC
Confidence            589999999999999999999999999999999988765421        111111111            123456677


Q ss_pred             Ccc-cccCCCEEEEeccCC--------hHHHHHHHHHHHhh---cCCCceeeecCCcCcHHHHH--------hhcCC---
Q 009395          220 DYE-SFKDVDMVIEAIIEN--------VSLKQQIFADLEKY---CPPHCILASNTSTIDLNLIG--------ERTYS---  276 (535)
Q Consensus       220 ~~~-~~~~aDlVI~avpe~--------~~~k~~v~~~l~~~---~~~~~ii~s~tS~~~~~~l~--------~~~~~---  276 (535)
                      +++ .+.+||+++.|||..        ......+...+...   ..++++++. .||+++....        .....   
T Consensus        69 ~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii-~STv~pGtt~~~~~~~l~~~~~~~~~  147 (202)
T d1mv8a2          69 DFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAG  147 (202)
T ss_dssp             CHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBT
T ss_pred             CHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceee-ccccCCcchhhhhhhhhhcccccccc
Confidence            764 489999999999752        33334555554443   446665553 4445443211        11111   


Q ss_pred             CCcEEeecc--cCCCCC-----CCEEEEEeCCCCCHHHHHHHHHHHHhcCCceEE
Q 009395          277 KDRIVGAHF--FSPAHV-----MPLLEIVRTNQTSPQVIVDLLDIGKKIKKTPIV  324 (535)
Q Consensus       277 ~~r~ig~h~--~~P~~~-----~~lveiv~~~~ts~e~~~~~~~l~~~lGk~~i~  324 (535)
                      ..-.+...|  ..|-..     .+-..++.+  .+++..+.++++++.+....+.
T Consensus       148 ~~~~~~~~PE~~~~G~a~~d~~~~~~iViG~--~~~~~~~~~~~ly~~i~~~ii~  200 (202)
T d1mv8a2         148 VDFGVGTNPEFLRESTAIKDYDFPPMTVIGE--LDKQTGDLLEEIYRELDAPIIR  200 (202)
T ss_dssp             TTBEEEECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTSSSCEEE
T ss_pred             ccccchhhhhhhcccchhhhhcCCCeEEEEe--CCHHHHHHHHHHHHhcCCCeEe
Confidence            111122211  111110     011123343  3688999999999998765543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.01  E-value=1.6e-10  Score=104.05  Aligned_cols=101  Identities=15%  Similarity=0.187  Sum_probs=70.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN--EKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~--~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  224 (535)
                      |||+|||+|.||.++|..|+++|++|++|.|+  ++.++.....        .....+.   .......+..+++++ .+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~--------~~~~~~~---~~~~~~~i~~~~~~~~~~   69 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAG--------REHPRLG---VKLNGVEIFWPEQLEKCL   69 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTT--------CCBTTTT---BCCCSEEEECGGGHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhh--------hhhhhhc---chhccccccccccHHHHH
Confidence            58999999999999999999999999999884  4434332110        0000000   000012344566664 58


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeec
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASN  261 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~  261 (535)
                      ++||+||.|||.  ...+.+++++.++++++.++...
T Consensus        70 ~~ad~Ii~avps--~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          70 ENAEVVLLGVST--DGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             TTCSEEEECSCG--GGHHHHHHHHTTTCCSCEEEECC
T ss_pred             hccchhhcccch--hhhHHHHHhhccccccceecccc
Confidence            999999999984  46789999999999887766543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.95  E-value=1.2e-09  Score=94.24  Aligned_cols=123  Identities=18%  Similarity=0.183  Sum_probs=79.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      -+||+|||+|.+|.++|..++.+|.  +|+++|++++..+....++++.   ....+           .....+.+++++
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a---~~~~~-----------~~~~~~~d~~~~   70 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA---QAFTA-----------PKKIYSGEYSDC   70 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG---GGGSC-----------CCEEEECCGGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc---ccccC-----------CceEeeccHHHh
Confidence            4699999999999999999999984  8999999998764332222111   00011           123345688999


Q ss_pred             cCCCEEEEeccC--------------ChHHHHHHHHHHHhhcCCCce-eeecCCcCcHHHHHhhcCC-CCcEEee
Q 009395          225 KDVDMVIEAIIE--------------NVSLKQQIFADLEKYCPPHCI-LASNTSTIDLNLIGERTYS-KDRIVGA  283 (535)
Q Consensus       225 ~~aDlVI~avpe--------------~~~~k~~v~~~l~~~~~~~~i-i~s~tS~~~~~~l~~~~~~-~~r~ig~  283 (535)
                      ++||+||.+...              +..+.+++..++.++.++..+ ++||...+....++...+. +.|++|+
T Consensus        71 ~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          71 KDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             TTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence            999999998621              234566777788877655443 2344332222233444444 4678875

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.94  E-value=1.1e-09  Score=94.89  Aligned_cols=124  Identities=18%  Similarity=0.195  Sum_probs=80.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      -+||+|||+|.+|.++|..++.+|+  +++++|++++.++.....+.+..    ..  .       .......+.+++++
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~----~~--~-------~~~~~~~~~d~~~l   72 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGK----VF--A-------PKPVDIWHGDYDDC   72 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHT----TS--S-------SSCCEEEECCGGGT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCc----cc--c-------CCCeEEEECCHHHh
Confidence            3589999999999999999999986  89999999988654333332210    00  0       00112235678999


Q ss_pred             cCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCcee-eecCCcCcHHHHHhhcCC-CCcEEee
Q 009395          225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNLIGERTYS-KDRIVGA  283 (535)
Q Consensus       225 ~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii-~s~tS~~~~~~l~~~~~~-~~r~ig~  283 (535)
                      ++||+||.+.-              .+..+.+++.++|.++.++..++ +||...+-...+++..+. |.|++|+
T Consensus        73 ~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          73 RDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             TTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             ccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHHHHHHCcChhheecC
Confidence            99999998762              23556777788888887655432 343332222233333343 4788885

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.9e-10  Score=107.51  Aligned_cols=84  Identities=18%  Similarity=0.188  Sum_probs=75.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+++|++++|+||+++||||+|||++++++++.++|++++..+ |                                   
T Consensus       162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~-~-----------------------------------  205 (245)
T d2f6qa1         162 MLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLP-P-----------------------------------  205 (245)
T ss_dssp             HHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSC-H-----------------------------------
T ss_pred             hcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHH
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKS  120 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~  120 (535)
                      .+...+|++++.....++++.++.|.+.|..++.|+|+++
T Consensus       206 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~n  245 (245)
T d2f6qa1         206 NALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN  245 (245)
T ss_dssp             HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC
T ss_pred             HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccCC
Confidence            2566789999988888899999999999999999999974

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.91  E-value=2.5e-09  Score=91.83  Aligned_cols=123  Identities=24%  Similarity=0.325  Sum_probs=80.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      .||+|||+|.+|+++|..++.+|+  +++++|++++.++.-..++++...   -.+          ...+..++++++++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~---~~~----------~~~i~~~~~~~~~~   68 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS---FYP----------TVSIDGSDDPEICR   68 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG---GST----------TCEEEEESCGGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccc---cCC----------CceeecCCCHHHhh
Confidence            589999999999999999999987  899999999876543322322100   000          12344567789999


Q ss_pred             CCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCce-eeecCCcCcHHHHHhhcCC-CCcEEee
Q 009395          226 DVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCI-LASNTSTIDLNLIGERTYS-KDRIVGA  283 (535)
Q Consensus       226 ~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~i-i~s~tS~~~~~~l~~~~~~-~~r~ig~  283 (535)
                      +||+||.+.  |            .+..+.+++..++.++.+...+ ++||..-.-...+.+..+. +.|++|+
T Consensus        69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred             CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHHHHHHCCChhhccCC
Confidence            999999876  1            2455777777888888765543 2343322222222333333 5688885

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.91  E-value=2.3e-09  Score=92.24  Aligned_cols=123  Identities=21%  Similarity=0.250  Sum_probs=78.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.+|.++|..++..|.  +++++|++++..+.....+.....            ......++..++++++++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~------------~~~~~~~i~~~~~~~~~~   68 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP------------VGLFDTKVTGSNDYADTA   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH------------HHTCCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc------------hhcccceEEecCCHHHhc
Confidence            589999999999999999999985  899999998876543322211110            001112455567888999


Q ss_pred             CCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceee--ecCCcCcHHHHHhhcCC-CCcEEee
Q 009395          226 DVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILA--SNTSTIDLNLIGERTYS-KDRIVGA  283 (535)
Q Consensus       226 ~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~--s~tS~~~~~~l~~~~~~-~~r~ig~  283 (535)
                      +||+||.+.  |.            +..+.+++.+.+.++.+ +++++  ||....-...+....+. +.|++|+
T Consensus        69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtNPvd~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIVVSNPLDIMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEECCSSHHHHHHHHHHHHCSCGGGEEEE
T ss_pred             CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC-CeEEEEecCChHHHHHHHHHHhCCChHhEeeC
Confidence            999999986  22            33456677778888875 44443  33221111122233333 4688875

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.91  E-value=3.2e-09  Score=91.11  Aligned_cols=123  Identities=15%  Similarity=0.267  Sum_probs=78.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.+|+++|..++.+|.  ++.++|++++..+.-..++++....   .+         ...++..++++++++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~---~~---------~~~~i~~~~d~~~~~   68 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG---ID---------KYPKIVGGADYSLLK   68 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHT---TT---------CCCEEEEESCGGGGT
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccc---cC---------CCCccccCCCHHHhc
Confidence            589999999999999999998886  7999999998865433333322110   00         112455667899999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeeecCCcCcH-H-HHHhhcCC-CCcEEee
Q 009395          226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDL-N-LIGERTYS-KDRIVGA  283 (535)
Q Consensus       226 ~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~-~l~~~~~~-~~r~ig~  283 (535)
                      +||+||.+.-              .+..+.+++..++.++.+ +++++..|-...+ + .+.+..+. +.|++|+
T Consensus        69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-ESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTST-TCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred             cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCC-CcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence            9999998762              133455566666777654 5555443432221 1 22333333 5678875

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.80  E-value=8.9e-09  Score=89.81  Aligned_cols=122  Identities=20%  Similarity=0.263  Sum_probs=77.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.+|+++|..++..|+  ++.++|++++..+.-..++++.   ....+          ...+....++++++
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~---~~~~~----------~~~~~~~~d~~~~~   87 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG---SLFLQ----------TPKIVADKDYSVTA   87 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT---GGGCC----------CSEEEECSSGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc---ccccC----------CCeEEeccchhhcc
Confidence            599999999999999999999998  8999999988765433333221   00001          01233456789999


Q ss_pred             CCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCce-eeecCCcCcHHHHHhhcCCC-CcEEe
Q 009395          226 DVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCI-LASNTSTIDLNLIGERTYSK-DRIVG  282 (535)
Q Consensus       226 ~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~i-i~s~tS~~~~~~l~~~~~~~-~r~ig  282 (535)
                      +||+||.+.-              .+..+.+++..++.+..++..+ ++||..-+-..-+.+..+.| .|++|
T Consensus        88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            9999998761              1344667777778887655442 23333222222233334443 67766

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.79  E-value=8.9e-09  Score=88.64  Aligned_cols=122  Identities=20%  Similarity=0.303  Sum_probs=75.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|||+|.+|+++|..++..|.  +++++|++++.++....++.+..   ...+          ......+.++++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~---~~~~----------~~~~~~~~d~~~l~   68 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM---ANLE----------AHGNIVINDWAALA   68 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---GGSS----------SCCEEEESCGGGGT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc---cccC----------CccceeccCHHHhc
Confidence            699999999999999999998885  89999999987654333332211   0000          01122356788999


Q ss_pred             CCCEEEEeccC------------------ChHHHHHHHHHHHhhcCCCceeeecCCcCc-HH-HHHhhcCC-CCcEEee
Q 009395          226 DVDMVIEAIIE------------------NVSLKQQIFADLEKYCPPHCILASNTSTID-LN-LIGERTYS-KDRIVGA  283 (535)
Q Consensus       226 ~aDlVI~avpe------------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~-~l~~~~~~-~~r~ig~  283 (535)
                      +||+||.+...                  +..+.+++.+.+.++. |+++++..|-... ++ .+.+..+. +.|++|.
T Consensus        69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViGt  146 (146)
T d1hyha1          69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQHVTGFPAHKVIGT  146 (146)
T ss_dssp             TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEecCcHHHHHHHHHHHhCCCccceeCc
Confidence            99999987521                  2234556666677765 4555543332221 12 22333343 4677773

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.79  E-value=8.6e-09  Score=88.46  Aligned_cols=100  Identities=18%  Similarity=0.272  Sum_probs=68.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||+|||+|.+|.++|..++.++. ++.++|++++..+.....+....            .......++..+.+++++++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~------------~~~~~~~~i~~~~d~~~~~~   69 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEAS------------PIEGFDVRVTGTNNYADTAN   69 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTH------------HHHTCCCCEEEESCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccc------------cccCCCCEEEecCcHHHhcC
Confidence            589999999999999999998886 99999999887654333222111            11111124556778999999


Q ss_pred             CCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeee
Q 009395          227 VDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILAS  260 (535)
Q Consensus       227 aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s  260 (535)
                      ||+||.+..              .+..+.+++..++.++.++ ++++.
T Consensus        70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~-aiviv  116 (142)
T d1uxja1          70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPN-AVIIM  116 (142)
T ss_dssp             CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTT-CEEEE
T ss_pred             CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCC-ceEEE
Confidence            999999872              1233556677777777654 44443

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.78  E-value=1.5e-08  Score=86.61  Aligned_cols=121  Identities=22%  Similarity=0.307  Sum_probs=75.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc-cccccCcccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL-LTGVLDYESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~~  224 (535)
                      +||+|||+|.+|.++|..++.+|.  ++.++|++++.++.....+.+..               ..... ...+.+++++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~---------------~~~~~~~~~~~~~~~~   65 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGT---------------PFTRRANIYAGDYADL   65 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---------------GGSCCCEEEECCGGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccc---------------cccccccccCCcHHHh
Confidence            589999999999999999998885  89999999987654332222211               00111 1234578899


Q ss_pred             cCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCcee-eecCCcCcHHHHHhhcCC-CCcEEee
Q 009395          225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCIL-ASNTSTIDLNLIGERTYS-KDRIVGA  283 (535)
Q Consensus       225 ~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii-~s~tS~~~~~~l~~~~~~-~~r~ig~  283 (535)
                      ++||+||.+.-              .+..+.+++.+.+.++.++..++ +||-...-...+.+..+. |.|++|.
T Consensus        66 ~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~~k~sg~p~~rViGt  140 (140)
T d1a5za1          66 KGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (140)
T ss_dssp             TTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             cCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHHHHHHCcCccceeCc
Confidence            99999999861              14445667777888877654433 233221111122233333 4678773

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.71  E-value=4.1e-09  Score=99.63  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=76.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |++||++++|++|+++||||+|||++++.+.+.+++++++..+ |                                   
T Consensus       162 lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~-~-----------------------------------  205 (249)
T d1sg4a1         162 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIP-D-----------------------------------  205 (249)
T ss_dssp             HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             cccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            4789999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhcCHHHHHHHH
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAEDFQKLLRSETCKSLVH  123 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~~f~~~~~s~e~~~~i~  123 (535)
                      .+...+|+.++......+.+.++.|.+.|..+..+++.++++.
T Consensus       206 ~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le  248 (249)
T d1sg4a1         206 HARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ  248 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence            2556788888888877888999999999999999999998764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.68  E-value=3.6e-08  Score=85.69  Aligned_cols=126  Identities=23%  Similarity=0.340  Sum_probs=78.3

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (535)
                      ++-+||+|||+|.+|+.+|..++..|+ +++++|++++.++.....+.+.....   +         ....+..++++ +
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~---~---------~~~~~~~~~~~~~   72 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D---------TNVSVRAEYSYEA   72 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T---------CCCCEEEECSHHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhcccc---C---------CeeEEeccCchhh
Confidence            345799999999999999999998886 89999999887665444333321110   0         01123344555 4


Q ss_pred             cccCCCEEEEecc------------C-------ChHHHHHHHHHHHhhcCCCceeeecCCcCc-HH-HHHhhcCC-CCcE
Q 009395          223 SFKDVDMVIEAII------------E-------NVSLKQQIFADLEKYCPPHCILASNTSTID-LN-LIGERTYS-KDRI  280 (535)
Q Consensus       223 ~~~~aDlVI~avp------------e-------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~-~~-~l~~~~~~-~~r~  280 (535)
                      ++++||+||.+..            .       +..+.+++.+++.++.++.. ++..|.... +. .+.+..+. +.|+
T Consensus        73 ~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~ai-viivsNPvd~lt~~~~~~sg~p~~rV  151 (154)
T d1pzga1          73 ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF-IIVVTNPLDCMVKVMCEASGVPTNMI  151 (154)
T ss_dssp             HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCE-EEECCSSHHHHHHHHHHHHCCCGGGE
T ss_pred             hhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcE-EEEeCCcHHHHHHHHHHHhCcChhcE
Confidence            6899999999762            1       22356677777888776544 433333221 12 23333343 4688


Q ss_pred             Eee
Q 009395          281 VGA  283 (535)
Q Consensus       281 ig~  283 (535)
                      +|+
T Consensus       152 iG~  154 (154)
T d1pzga1         152 CGM  154 (154)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            875

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.65  E-value=1.4e-08  Score=87.07  Aligned_cols=121  Identities=22%  Similarity=0.327  Sum_probs=71.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc-cccccCcccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISL-LTGVLDYESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~-i~~~~~~~~~  224 (535)
                      +||+|||+|.+|+++|..++.+|+  +++++|++++.++....++.        ... +      .... ...+.+++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~--------~~~-~------~~~~~~~~~~~~~~~   66 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDIN--------HGL-P------FMGQMSLYAGDYSDV   66 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHT--------TSC-C------CTTCEEEC--CGGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeec--------cCc-c------cCCCeeEeeCcHHHh
Confidence            489999999999999999999987  89999999986543221111        100 0      0011 1224567889


Q ss_pred             cCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCce-eeecCCcCcHHHHHhhcCC-CCcEEee
Q 009395          225 KDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCI-LASNTSTIDLNLIGERTYS-KDRIVGA  283 (535)
Q Consensus       225 ~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~i-i~s~tS~~~~~~l~~~~~~-~~r~ig~  283 (535)
                      ++||+||.+.  +            .+..+.+++.+++.++.++..+ ++||-...-...+++..+. +.|++|+
T Consensus        67 ~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          67 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHHHHHHCCCccceecC
Confidence            9999999885  2            1344566677778777755432 2333222211223334344 4688885

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=2.9e-09  Score=93.87  Aligned_cols=103  Identities=13%  Similarity=-0.024  Sum_probs=72.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      |||+|||+|.||+.+|..|+++|++|++++++++..+...           ..+.-.     .........++.+.+..+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~~~   64 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-----------LVETDG-----SIFNESLTANDPDFLATS   64 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-----------EECTTS-----CEEEEEEEESCHHHHHTC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc-----------cccCCc-----cccccccccchhhhhccc
Confidence            6899999999999999999999999999999876432110           000000     000111223344567899


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN  268 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  268 (535)
                      |+||.|++..  -..++++.+.+.+.++++|++...++...
T Consensus        65 D~iii~vka~--~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          65 DLLLVTLKAW--QVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             SEEEECSCGG--GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             ceEEEeeccc--chHHHHHhhccccCcccEEeeccCcccHH
Confidence            9999999753  34678889999999998887766666443

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.65  E-value=3.4e-08  Score=84.74  Aligned_cols=100  Identities=19%  Similarity=0.232  Sum_probs=63.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +||+|||+ |.+|.++|..++..|.  ++.++|++++.  ++.....+.+..   ...+.-.       .-.+..+.+++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~---~~~~~~~-------~~~~~~~~d~~   70 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL---AGTRSDA-------NIYVESDENLR   70 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH---TTSCCCC-------EEEEEETTCGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcc---cccccCC-------ccccCCcchHH
Confidence            58999996 9999999999999995  99999998643  222222222211   0000000       00122345788


Q ss_pred             cccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCcee
Q 009395          223 SFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCIL  258 (535)
Q Consensus       223 ~~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii  258 (535)
                      ++++||+||.+.  |            .+..+.+++...+.++.+. .++
T Consensus        71 ~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~-~ii  119 (145)
T d1hyea1          71 IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDT-KIF  119 (145)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCC-EEE
T ss_pred             HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCC-eEE
Confidence            999999999985  2            1344566677778888654 444

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.63  E-value=1e-07  Score=82.17  Aligned_cols=123  Identities=20%  Similarity=0.347  Sum_probs=76.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      .||+|||+|.+|+++|..++..+. +++++|++++..+.....+++....            ......+..+.+++++++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~------------~~~~~~v~~~~~~~~~~~   71 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVM------------AYSNCKVSGSNTYDDLAG   71 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHH------------HTCCCCEEEECCGGGGTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccc------------cCCCcEEEecccccccCC
Confidence            589999999999999999888886 8999999988765444333322100            001113444567889999


Q ss_pred             CCEEEEecc--C-----------------ChHHHHHHHHHHHhhcCCCceeeecCCcCcH-HH-HHhhcCC-CCcEEee
Q 009395          227 VDMVIEAII--E-----------------NVSLKQQIFADLEKYCPPHCILASNTSTIDL-NL-IGERTYS-KDRIVGA  283 (535)
Q Consensus       227 aDlVI~avp--e-----------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~~-l~~~~~~-~~r~ig~  283 (535)
                      ||+||.+.-  .                 +..+.+++..++.++.+ +++++..|-...+ +. +++..+. +.|++|+
T Consensus        72 advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence            999998862  1                 12255666667777765 5554433322211 22 2233333 5788875

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=3.7e-08  Score=85.75  Aligned_cols=122  Identities=17%  Similarity=0.261  Sum_probs=75.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      -.||+|||+|.+|..+|..++..|+  +++++|++++.+.....++++.   ....+          ...+..+.+++++
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~---~~~~~----------~~~~~~~~d~~~~   85 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHG---SLFLS----------TPKIVFGKDYNVS   85 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHT---TTTCS----------CCEEEEESSGGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCc---chhcC----------CCeEEeccchhhh
Confidence            3589999999999999999999987  8999999998765433333211   00001          0123345678999


Q ss_pred             cCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeeecCCcCcH-H-HHHhhcCC-CCcEEe
Q 009395          225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTSTIDL-N-LIGERTYS-KDRIVG  282 (535)
Q Consensus       225 ~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~-~-~l~~~~~~-~~r~ig  282 (535)
                      ++||+||.+.-              .+..+.+++...+.++.+ +.+++..|....+ + .+.+..+. |.|++|
T Consensus        86 ~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p-~~ivivvtNPvDv~t~~~~k~sg~p~~rV~G  159 (159)
T d2ldxa1          86 ANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSP-DCKIIVVTNPVDILTYVVWKISGFPVGRVIG  159 (159)
T ss_dssp             TTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHST-TCEEEECSSSHHHHHHHHHHHHCSCTTTEEE
T ss_pred             ccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCC-CeEEEEeCCcHHHHHHHHHHHHCcCcccccC
Confidence            99999998761              133455555556666654 5544433332211 1 22333333 456665

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.42  E-value=2e-06  Score=77.49  Aligned_cols=112  Identities=20%  Similarity=0.282  Sum_probs=68.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV----RANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i----~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (535)
                      |||+|||+|.+|.++|.+++ .|++|+.||.|++.++......    +..++...+.          ...++..+++. .
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~----------~~~~~~~~~~~~~   69 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS----------KQLSIKATLDSKA   69 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH----------SCCCEEEESCHHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhh----------hhhhhhccchhhh
Confidence            58999999999999998775 6999999999999987664321    0111111111          11223333333 4


Q ss_pred             cccCCCEEEEeccCC---------hHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHh
Q 009395          223 SFKDVDMVIEAIIEN---------VSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE  272 (535)
Q Consensus       223 ~~~~aDlVI~avpe~---------~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~  272 (535)
                      ...++|+++.|+|..         ........+.+... .++.+++. .|++++....+
T Consensus        70 ~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~iii-~Stv~pgt~~~  126 (196)
T d1dlja2          70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLII-KSTIPIGFITE  126 (196)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHH-CSSCEEEE-CSCCCTTHHHH
T ss_pred             hhhccccccccCCccccccCCCcceeEEeehhhhhhhc-ccceeEEe-eeecCceeeee
Confidence            468999999999742         22334444445444 44555543 55565554433

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=98.35  E-value=7.2e-08  Score=89.69  Aligned_cols=71  Identities=13%  Similarity=0.083  Sum_probs=59.6

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhccCCCcchhhcccCCCCCchHHHHHHHHHHHHHHHhCCCC
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEHRRPWVATLYKTDKIEPLGEAREIFKFARAQARKQAPNL   80 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (535)
                      |+|||++++|+||+++||||+|||++++++++.+++++++..+ |                                   
T Consensus       157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~-~-----------------------------------  200 (230)
T d2a7ka1         157 IIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYP-A-----------------------------------  200 (230)
T ss_dssp             HHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSC-H-----------------------------------
T ss_pred             cccccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCC-H-----------------------------------
Confidence            4689999999999999999999999999999999999999853 2                                   


Q ss_pred             CcHHHHHHHHHHhhcCChHHHHHHHHH
Q 009395           81 THPIVCIDVVEAGVVSGPRAGLQKEAE  107 (535)
Q Consensus        81 ~A~~~~~~~i~~~~~~~~~~~l~~E~~  107 (535)
                      .+...+|+.+++.....+++.++.|..
T Consensus       201 ~a~~~~K~~l~~~~~~~l~~~~~~~~a  227 (230)
T d2a7ka1         201 SAFINTKRAVNKPFIHLLEQTRDASKA  227 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            256678899988777677777766643

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=1.6e-06  Score=76.35  Aligned_cols=76  Identities=20%  Similarity=0.278  Sum_probs=50.1

Q ss_pred             cceEEEEeCChhhHHHHH--HHHhC----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          147 VKKVAILGGGLMGSGIAT--ALILS----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~--~l~~~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      -+||+|||+|..|...+.  .++..    +.+++++|+++++++.....+++.....   +.         --++..++|
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~---~~---------~~~i~~~td   69 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEV---GA---------DLKFEKTMN   69 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHT---TC---------CCEEEEESC
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhc---CC---------CeEEEEeCC
Confidence            359999999999976443  23332    4599999999998875544333332211   10         024555666


Q ss_pred             c-ccccCCCEEEEec
Q 009395          221 Y-ESFKDVDMVIEAI  234 (535)
Q Consensus       221 ~-~~~~~aDlVI~av  234 (535)
                      . +++++||+||.++
T Consensus        70 ~~eaL~dad~Vv~~~   84 (171)
T d1obba1          70 LDDVIIDADFVINTA   84 (171)
T ss_dssp             HHHHHTTCSEEEECC
T ss_pred             hhhcccCCCeEeeec
Confidence            5 5689999999875

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.33  E-value=8.8e-07  Score=75.31  Aligned_cols=99  Identities=15%  Similarity=0.240  Sum_probs=63.0

Q ss_pred             ceEEEEe-CChhhHHHHHHHHhCCC--cEEEEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          148 KKVAILG-GGLMGSGIATALILSNY--PVILKEVNE--KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       148 ~kV~vIG-~G~mG~~iA~~l~~~G~--~V~l~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      .||+||| +|.+|+++|..++.+|+  ++.++|++.  +..+....++.+..    ...  +       ...+ .+.+++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~----~~~--~-------~~~i-~~~~~~   66 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI----AYD--S-------NTRV-RQGGYE   66 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH----TTT--C-------CCEE-EECCGG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcc----ccc--C-------CceE-eeCCHH
Confidence            4899999 69999999999999987  899999753  33322122222211    000  0       0122 245788


Q ss_pred             cccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeec
Q 009395          223 SFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASN  261 (535)
Q Consensus       223 ~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~  261 (535)
                      ++++||+||.+.  |.            +..+.+++..+|.++.++ .+++..
T Consensus        67 ~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~-~i~ivv  118 (142)
T d1o6za1          67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDD-YISLTT  118 (142)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSC-CEEEEC
T ss_pred             HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCC-ceEEEe
Confidence            899999999875  11            345666677777777654 444433

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.24  E-value=1.7e-06  Score=73.72  Aligned_cols=101  Identities=19%  Similarity=0.215  Sum_probs=63.8

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      .||+|||+ |.+|+++|..++.+|+  +++++|+++...+. . ++      . ......     .....+..+++++++
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a-~-Dl------~-~~~~~~-----~~~~~~~~~~~~~~~   66 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA-A-DL------S-HIETRA-----TVKGYLGPEQLPDCL   66 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH-H-HH------T-TSSSSC-----EEEEEESGGGHHHHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh-H-HH------h-hhhhhc-----CCCeEEcCCChHHHh
Confidence            38999995 9999999999999987  79999998654221 1 11      0 000000     000122223345678


Q ss_pred             cCCCEEEEecc--------------CChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          225 KDVDMVIEAII--------------ENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       225 ~~aDlVI~avp--------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      ++||+||.+.-              .+..+.+++..++.++.+ +++++..|.
T Consensus        67 ~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-~~iiivvtN  118 (144)
T d1mlda1          67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIISN  118 (144)
T ss_dssp             TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSS
T ss_pred             CCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC-CeEEEEecC
Confidence            99999998752              244566777778888854 555544443

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=98.19  E-value=1.8e-07  Score=88.00  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=40.1

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHHHHHHHhhcc
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTARQWALDILEH   42 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~la~~   42 (535)
                      |+|||++++|+||+++||||+|||++++.+.+.+++++++..
T Consensus       169 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~  210 (249)
T d1szoa_         169 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEK  210 (249)
T ss_dssp             HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTS
T ss_pred             ecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcC
Confidence            478999999999999999999999999999999999999986

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=3.6e-07  Score=78.18  Aligned_cols=101  Identities=20%  Similarity=0.275  Sum_probs=62.5

Q ss_pred             ceEEEEe-CChhhHHHHHHHHhC-C--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILG-GGLMGSGIATALILS-N--YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG-~G~mG~~iA~~l~~~-G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      +||+||| +|.+|+++|..++.+ +  .++.++|+++.. +....++.+       .....      ....+..++++++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~-~g~a~Dl~h-------~~~~~------~~~~~~~~~~~~~   66 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT-PGVAVDLSH-------IPTAV------KIKGFSGEDATPA   66 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTH-HHHHHHHHT-------SCSSC------EEEEECSSCCHHH
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccc-hhHHHHHHC-------Ccccc------CCcEEEcCCCccc
Confidence            5899999 599999999987643 4  599999987543 211111111       00000      0112233556788


Q ss_pred             ccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCceeeecCC
Q 009395          224 FKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNTS  263 (535)
Q Consensus       224 ~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~tS  263 (535)
                      +++||+||.+.  |            .+..+.+++.+++.++.++.. ++..|.
T Consensus        67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~ai-vivvtN  119 (145)
T d2cmda1          67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC-IGIITN  119 (145)
T ss_dssp             HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSE-EEECSS
T ss_pred             cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcE-EEEccC
Confidence            99999999876  2            144566777778888876554 443333

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.10  E-value=1.9e-06  Score=76.81  Aligned_cols=44  Identities=30%  Similarity=0.412  Sum_probs=39.2

Q ss_pred             ceEEEE-eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Q 009395          148 KKVAIL-GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR  191 (535)
Q Consensus       148 ~kV~vI-G~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~  191 (535)
                      +||+|| |+|.||.+||..|+++|++|++|+|++++++...+.+.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            589999 78999999999999999999999999999887765443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.07  E-value=1.5e-06  Score=77.11  Aligned_cols=98  Identities=14%  Similarity=0.050  Sum_probs=72.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.+|..+|..+..-|.+|..||+++...                              ......+++ .+++
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~------------------------------~~~~~~~l~ell~~   92 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG------------------------------PWRFTNSLEEALRE   92 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS------------------------------SSCCBSCSHHHHTT
T ss_pred             ceEEEeccccccccceeeeecccccccccccccccc------------------------------ceeeeechhhhhhc
Confidence            689999999999999999999999999999874310                              011223454 4899


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|-+++.+.-+=++..+.++++++++..+-+  +.-+.+.+.+.
T Consensus        93 sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~  143 (181)
T d1qp8a1          93 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILK  143 (181)
T ss_dssp             CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred             cchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcc
Confidence            99999999987765544445677788999988754433  45566666663

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.04  E-value=1.3e-05  Score=69.83  Aligned_cols=76  Identities=20%  Similarity=0.205  Sum_probs=48.3

Q ss_pred             cceEEEEeCChhhHHHHH-HHHh-C-C---CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          147 VKKVAILGGGLMGSGIAT-ALIL-S-N---YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~-~l~~-~-G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      -.||+|||+|..|.+.+. .++. . .   -+++++|+++++++.....+.......   +         .-.++..++|
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~d   70 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREK---A---------PDIEFAATTD   70 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHH---C---------TTSEEEEESC
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHh---C---------CCcceEecCC
Confidence            358999999999876443 2222 2 2   389999999998764433332221111   1         0123445556


Q ss_pred             c-ccccCCCEEEEec
Q 009395          221 Y-ESFKDVDMVIEAI  234 (535)
Q Consensus       221 ~-~~~~~aDlVI~av  234 (535)
                      . +++++||+||.++
T Consensus        71 ~~eal~~AD~Vvita   85 (167)
T d1u8xx1          71 PEEAFTDVDFVMAHI   85 (167)
T ss_dssp             HHHHHSSCSEEEECC
T ss_pred             hhhccCCCCEEEECC
Confidence            5 6799999999987

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.96  E-value=6.4e-06  Score=69.12  Aligned_cols=95  Identities=22%  Similarity=0.195  Sum_probs=62.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc--ccc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--SFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~  225 (535)
                      |++.|+|+|.+|..+|..|.+.|++|+++|.|++.++.+.           ..|..      ...+...-...++  .+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~-----------~~~~~------~~~gd~~~~~~l~~a~i~   63 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA-----------SYATH------AVIANATEENELLSLGIR   63 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT-----------TTCSE------EEECCTTCTTHHHHHTGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH-----------HhCCc------ceeeecccchhhhccCCc
Confidence            4789999999999999999999999999999999987653           11110      0000000000111  267


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeee
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILAS  260 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s  260 (535)
                      +||.||.+++++... ..+...+.+..+...+++-
T Consensus        64 ~a~~vi~~~~~~~~~-~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          64 NFEYVIVAIGANIQA-STLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             GCSEEEECCCSCHHH-HHHHHHHHHHTTCSEEEEE
T ss_pred             cccEEEEEcCchHHh-HHHHHHHHHHcCCCcEEee
Confidence            899999999977543 2333445555555556553

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=6.8e-06  Score=71.51  Aligned_cols=72  Identities=19%  Similarity=0.119  Sum_probs=46.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHh--C----CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC
Q 009395          148 KKVAILGGGLMGSGIATALIL--S----NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD  220 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~--~----G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~  220 (535)
                      +||+|||+|..|.+.+.....  .    +.+++++|+++++++... .+.+   ......           ..+..+ ++
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~-d~~~---~~~~~~-----------~~~~~t~~~   65 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVV-DFVK---RLVKDR-----------FKVLISDTF   65 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHH-HHHH---HHHTTS-----------SEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHH-HHHH---hhhccC-----------ceEEEecCc
Confidence            589999999999888854332  1    358999999999876432 2111   111111           123333 34


Q ss_pred             cccccCCCEEEEec
Q 009395          221 YESFKDVDMVIEAI  234 (535)
Q Consensus       221 ~~~~~~aDlVI~av  234 (535)
                      .+++++||+||.+.
T Consensus        66 ~~~l~~aDvVVita   79 (162)
T d1up7a1          66 EGAVVDAKYVIFQF   79 (162)
T ss_dssp             HHHHTTCSEEEECC
T ss_pred             ccccCCCCEEEEec
Confidence            57799999999986

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.90  E-value=6.4e-05  Score=62.66  Aligned_cols=93  Identities=16%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC---c--
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD---Y--  221 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~---~--  221 (535)
                      +||.|+|+|.+|..+|..|.+.|++|+++|.|++.++.+.+.          .+.          .-+... ++   +  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~----------~~~----------~vi~Gd~~~~~~l~~   60 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----------IDA----------LVINGDCTKIKTLED   60 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------CSS----------EEEESCTTSHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh----------hhh----------hhccCcccchhhhhh
Confidence            589999999999999999999999999999999988765421          010          001100 11   1  


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ..+.++|.++.+++++..  .-+...+.+.+.+..+++...
T Consensus        61 ~~i~~a~~vv~~t~~d~~--N~~~~~~~k~~~~~~iI~~~~   99 (132)
T d1lssa_          61 AGIEDADMYIAVTGKEEV--NLMSSLLAKSYGINKTIARIS   99 (132)
T ss_dssp             TTTTTCSEEEECCSCHHH--HHHHHHHHHHTTCCCEEEECS
T ss_pred             cChhhhhhhcccCCcHHH--HHHHHHHHHHcCCceEEEEec
Confidence            136789999988876532  223344445555666665433

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.85  E-value=4.3e-05  Score=66.74  Aligned_cols=122  Identities=20%  Similarity=0.263  Sum_probs=66.4

Q ss_pred             ceEEEEeCChhhHH--HHHHHHhC----CCcEEEEeCCHHHHHHH-HHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          148 KKVAILGGGLMGSG--IATALILS----NYPVILKEVNEKFLEAG-IGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       148 ~kV~vIG~G~mG~~--iA~~l~~~----G~~V~l~d~~~~~~~~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      +||+|||+|..|.+  ++..+...    +-+++++|++++..+.. .......+  ....+.         .-++..++|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~--~~~~~~---------~~~~~~~td   70 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRM--VEKAGV---------PIEIHLTLD   70 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHH--HHHTTC---------CCEEEEESC
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHH--HHhcCC---------CceeeecCC
Confidence            58999999987753  44444432    13899999987652211 11111100  001110         013344555


Q ss_pred             c-ccccCCCEEEEeccC----------------------------------ChHHHHHHHHHHHhhcCCCceeeecCCcC
Q 009395          221 Y-ESFKDVDMVIEAIIE----------------------------------NVSLKQQIFADLEKYCPPHCILASNTSTI  265 (535)
Q Consensus       221 ~-~~~~~aDlVI~avpe----------------------------------~~~~k~~v~~~l~~~~~~~~ii~s~tS~~  265 (535)
                      . +++++||+||.++.-                                  +..+.+++.+++.+++ |++++...|  -
T Consensus        71 ~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vt--N  147 (169)
T d1s6ya1          71 RRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFT--N  147 (169)
T ss_dssp             HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECS--S
T ss_pred             chhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeC--C
Confidence            4 678999999999841                                  2334577778888886 455554333  3


Q ss_pred             cHHHH---HhhcCCCCcEEee
Q 009395          266 DLNLI---GERTYSKDRIVGA  283 (535)
Q Consensus       266 ~~~~l---~~~~~~~~r~ig~  283 (535)
                      |++.+   ......+.|++|+
T Consensus       148 Pvdv~t~~~~k~~p~~kviGl  168 (169)
T d1s6ya1         148 PAGMVTEAVLRYTKQEKVVGL  168 (169)
T ss_dssp             SHHHHHHHHHHHCCCCCEEEC
T ss_pred             hHHHHHHHHHHHCCCCCEEee
Confidence            33322   2222234678775

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.81  E-value=1.1e-05  Score=70.82  Aligned_cols=41  Identities=20%  Similarity=0.116  Sum_probs=37.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      -++|.|||+|.||..+|..|+++|++|+++||+.++++...
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~   42 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLS   42 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHH
Confidence            36899999999999999999999999999999999887543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.77  E-value=4.8e-06  Score=74.58  Aligned_cols=102  Identities=17%  Similarity=0.060  Sum_probs=71.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-ccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-FKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~~  226 (535)
                      ++|+|||.|.+|..+|..+..-|.+|..||+....-...            ..             .+....++++ ++.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~------------~~-------------~~~~~~~l~~ll~~  104 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER------------AL-------------GLQRVSTLQDLLFH  104 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH------------HH-------------TCEECSSHHHHHHH
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCcccccchh------------hh-------------ccccccchhhcccc
Confidence            589999999999999999999999999999864321100            00             1222345544 689


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|-..+.+.-+=++....++++++++ |+| +  +.-+.+.+.+.
T Consensus       105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL~  155 (193)
T d1mx3a1         105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLV-NTARGGLVDEKALAQALK  155 (193)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred             CCEEEEeecccccchhhhhHHHHhccCCCCeEE-ecCCceEEcHHHHHHHHH
Confidence            999999999766654444456667789999886 554 3  34556666663

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.73  E-value=9.3e-06  Score=72.89  Aligned_cols=99  Identities=16%  Similarity=0.142  Sum_probs=70.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.+|..+|..+..-|.+|..||+.......             ..+             . ...+++ .++.
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~-------------~~~-------------~-~~~~l~~~l~~   96 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE-------------KKG-------------Y-YVDSLDDLYKQ   96 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------HTT-------------C-BCSCHHHHHHH
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCcccccccc-------------cce-------------e-eeccccccccc
Confidence            68999999999999999999999999999976443111             001             1 123443 4789


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERT  274 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~  274 (535)
                      ||+|+.++|-..+.+.-+=++....++++++++ |+| +  +.-..+.+.+
T Consensus        97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL  146 (197)
T d1j4aa1          97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIV-NVSRGPLVDTDAVIRGL  146 (197)
T ss_dssp             CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEE-ECSCGGGBCHHHHHHHH
T ss_pred             cccccccCCccccccccccHHHHhhhCCccEEE-ecCchhhhhhHHHHHHH
Confidence            999999999776655444356667789999886 554 2  4455666655

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.67  E-value=4.7e-05  Score=65.72  Aligned_cols=94  Identities=14%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      -++|.|||+|.||..++..|...|+ +|++++|+.++.+.....+          |.           ......++ +.+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----------~~-----------~~~~~~~~~~~l   82 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------GG-----------EAVRFDELVDHL   82 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------TC-----------EECCGGGHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----------hc-----------ccccchhHHHHh
Confidence            4689999999999999999999998 6999999988876543211          10           11111222 457


Q ss_pred             cCCCEEEEeccCC-hHHHHHHHHHHHhhcCC--Cceeeec
Q 009395          225 KDVDMVIEAIIEN-VSLKQQIFADLEKYCPP--HCILASN  261 (535)
Q Consensus       225 ~~aDlVI~avpe~-~~~k~~v~~~l~~~~~~--~~ii~s~  261 (535)
                      .++|+||.|++.+ +-+.++.++...+.-+.  ..+|++.
T Consensus        83 ~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDl  122 (159)
T d1gpja2          83 ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDI  122 (159)
T ss_dssp             HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred             ccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence            8999999999633 23445556554433322  2355553

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=4.8e-05  Score=65.25  Aligned_cols=98  Identities=17%  Similarity=0.130  Sum_probs=67.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      ++|+|+|.|.+|.++|..+...|..|+++|++|-..-++.           -.|             .....-.+.+..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-----------~dG-------------~~v~~~~~a~~~a   80 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA-----------MEG-------------YEVTTMDEACQEG   80 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------HTT-------------CEECCHHHHTTTC
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh-----------cCc-------------eEeeehhhhhhhc
Confidence            5799999999999999999999999999999985432211           111             2222223557889


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc---CcHHHHHhh
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST---IDLNLIGER  273 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~---~~~~~l~~~  273 (535)
                      |+||.|.-..-.+    -.+-.+.+++++|+++.++.   +.+..|.+.
T Consensus        81 divvtaTGn~~vI----~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~  125 (163)
T d1li4a1          81 NIFVTTTGCIDII----LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNEN  125 (163)
T ss_dssp             SEEEECSSCSCSB----CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHH
T ss_pred             cEEEecCCCccch----hHHHHHhccCCeEEEEeccccceecHHHHhhc
Confidence            9999887542222    23445568999999765542   566666553

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.63  E-value=2.9e-05  Score=69.25  Aligned_cols=103  Identities=14%  Similarity=0.027  Sum_probs=71.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      -++|+|||.|.+|..+|..+..-|.+|..||+.........           ..             ......+++ .++
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------~~-------------~~~~~~~l~~ll~  102 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEA-----------SY-------------QATFHDSLDSLLS  102 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHH-----------HH-------------TCEECSSHHHHHH
T ss_pred             ccceEEeecccchHHHHHHHHhhccccccccccccccchhh-----------cc-------------cccccCCHHHHHh
Confidence            37899999999999999999999999999998644221110           00             111223443 478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhc
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERT  274 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~  274 (535)
                      .||+|+.++|-.++.+.-+=++....++++++++ |+| +  +.-+.+.+.+
T Consensus       103 ~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lI-N~sRG~ivde~aL~~aL  153 (191)
T d1gdha1         103 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVV-NTARGDLVDNELVVAAL  153 (191)
T ss_dssp             HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHH
T ss_pred             hCCeEEecCCCCchHhheecHHHhhCcCCccEEE-ecCCccchhhHHHHHHH
Confidence            9999999999877655444456777899999886 555 3  3445666665

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.58  E-value=2.8e-05  Score=69.24  Aligned_cols=104  Identities=13%  Similarity=0.042  Sum_probs=72.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||.|.+|..+|..+..-|.+|..||+.........           ..             .+....++ +.++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------~~-------------~~~~~~~l~~~l~   99 (188)
T d2naca1          44 AMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEK-----------EL-------------NLTWHATREDMYP   99 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHH-----------HH-------------TCEECSSHHHHGG
T ss_pred             ccceeeccccccchhhhhhhhccCceEEEEeeccccccccc-----------cc-------------cccccCCHHHHHH
Confidence            36899999999999999999999999999998532211100           00             11223344 4579


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY  275 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  275 (535)
                      +||+|+.++|-+.+.+.-+=++..+.++++++++ |+| +  +..+.|.+.+.
T Consensus       100 ~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lI-N~aRG~ivd~~aL~~aL~  151 (188)
T d2naca1         100 VCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV-NTARGKLCDRDAVARALE  151 (188)
T ss_dssp             GCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEE-ECSCGGGBCHHHHHHHHH
T ss_pred             hccchhhcccccccchhhhHHHHHHhCCCCCEEE-ecCchhhhhHHHHHHHHh
Confidence            9999999999776654444466777889999886 554 2  45567777663

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.57  E-value=7.6e-05  Score=64.04  Aligned_cols=99  Identities=16%  Similarity=0.145  Sum_probs=60.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      .||+|||+ |.+|.++|..|++.+.       +++++|.+..... +. .+    +........      .....+..++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~-~~-~l----~~~~~~~~~------~~~~~~~~~~   71 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGV-LD-GV----LMELQDCAL------PLLKDVIATD   71 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHH-HH-HH----HHHHHHTCC------TTEEEEEEES
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhh-hh-hh----hhhhccccc------ccccccccCc
Confidence            58999995 9999999999987653       5778887654321 11 10    000010000      0112233333


Q ss_pred             -CcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCcee
Q 009395          220 -DYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCIL  258 (535)
Q Consensus       220 -~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii  258 (535)
                       +++++++||+||.+.  |.            +..+.+++..++.++++.+.++
T Consensus        72 ~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~i  125 (154)
T d5mdha1          72 KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKV  125 (154)
T ss_dssp             CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred             ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEE
Confidence             356799999999876  21            2356677777888888877643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.53  E-value=9.6e-05  Score=64.68  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=63.8

Q ss_pred             CcceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccc
Q 009395          146 RVKKVAILGG-GLMGSGIATALILSNY-------PVILKEVNEKF--LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLL  215 (535)
Q Consensus       146 ~~~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i  215 (535)
                      +..||+|+|+ |.+|.+++..|++...       ++.++|++...  ++...-.    +    .....      .....+
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~md----l----~d~a~------~~~~~~   88 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAME----L----EDSLY------PLLREV   88 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH----H----HTTTC------TTEEEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhh----h----ccccc------ccccCc
Confidence            3568999996 9999999999987542       56777776542  2211100    0    11100      011233


Q ss_pred             cc-ccCcccccCCCEEEEec--c------------CChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          216 TG-VLDYESFKDVDMVIEAI--I------------ENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       216 ~~-~~~~~~~~~aDlVI~av--p------------e~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      .. ++++++++++|+||...  |            .+..+.+++.+.+.++++++++|+..+
T Consensus        89 ~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~  150 (175)
T d7mdha1          89 SIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG  150 (175)
T ss_dssp             EEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence            33 34467899999999876  2            234456777778888888888554333

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=2.2e-05  Score=69.65  Aligned_cols=102  Identities=15%  Similarity=0.130  Sum_probs=72.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~  225 (535)
                      -++|+|||.|.+|..+|..+..-|.+|..||+.........            .             .+. ..++ +.++
T Consensus        44 ~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~------------~-------------~~~-~~~l~ell~   97 (184)
T d1ygya1          44 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ------------L-------------GIE-LLSLDDLLA   97 (184)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH------------H-------------TCE-ECCHHHHHH
T ss_pred             ceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh------------c-------------Cce-eccHHHHHh
Confidence            46899999999999999999999999999998754322110            0             111 1234 3478


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY  275 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  275 (535)
                      .||+|+.++|-..+.+.-+=++....++++++++ |+| +  +.-+.+.+.+.
T Consensus        98 ~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lI-N~sRG~iVde~aL~~aL~  149 (184)
T d1ygya1          98 RADFISVHLPKTPETAGLIDKEALAKTKPGVIIV-NAARGGLVDEAALADAIT  149 (184)
T ss_dssp             HCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred             hCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEE-EecchhhhhhHHHHHHHh
Confidence            9999999999877654433356777889999886 554 2  45567777664

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.51  E-value=1.6e-05  Score=71.42  Aligned_cols=99  Identities=17%  Similarity=0.098  Sum_probs=70.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-cccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  226 (535)
                      ++|+|||.|.+|..+|..+..-|.+|+.||+......                  .         ..+.. .+++ .++.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~------------------~---------~~~~~-~~l~~l~~~   97 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD------------------H---------PDFDY-VSLEDLFKQ   97 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC------------------C---------TTCEE-CCHHHHHHH
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchhh------------------h---------cchhH-HHHHHHHHh
Confidence            6899999999999999999999999999998643210                  0         01111 2343 3688


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCC-c--CcHHHHHhhcC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTS-T--IDLNLIGERTY  275 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS-~--~~~~~l~~~~~  275 (535)
                      ||+|+.++|-..+.+.-+=++....++++++++ |+| +  +.-+.+.+.+.
T Consensus        98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~aRG~vvde~aL~~aL~  148 (199)
T d1dxya1          98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVI-NTARPNLIDTQAMLSNLK  148 (199)
T ss_dssp             CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEE-ECSCTTSBCHHHHHHHHH
T ss_pred             cccceeeecccccccccccHHHhhccCCceEEE-ecccHhhhhhHHHHHHHh
Confidence            999999999877755444456667789999886 555 2  34456666663

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=2e-05  Score=74.30  Aligned_cols=41  Identities=15%  Similarity=0.105  Sum_probs=30.8

Q ss_pred             CccCCCCCChhHHHhCCCcceecCCCchHHHHH--HHHHHhhc
Q 009395            1 MMLTSKPVKGEEAHSLGLVDAVVAPNQLVSTAR--QWALDILE   41 (535)
Q Consensus         1 mlltG~~i~A~eA~~~GLvd~vv~~~~l~~~a~--~~a~~la~   41 (535)
                      |++||++++|+||+++||||+||+++++...+.  ++++++++
T Consensus       173 llltg~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~~~~~l~~  215 (266)
T d1pjha_         173 CLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELRE  215 (266)
T ss_dssp             HHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             hhccCCcCCHHHHHHCCCEeEeeCchhhhHHHHHHHHHHHHHH
Confidence            578999999999999999999998766543332  34444443

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=2.6e-05  Score=69.41  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=71.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-ccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-SFK  225 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  225 (535)
                      -++|+|||.|.+|..+|..+...|.+|..||+......                            .......+++ .++
T Consensus        44 ~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------~~~~~~~~l~ell~   95 (188)
T d1sc6a1          44 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------GNATQVQHLSDLLN   95 (188)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----------------------------TTCEECSCHHHHHH
T ss_pred             ceEEEEeecccchhhhhhhcccccceEeeccccccchh----------------------------hhhhhhhhHHHHHh
Confidence            46899999999999999999999999999998643210                            0011123443 368


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc--CcHHHHHhhcC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST--IDLNLIGERTY  275 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~--~~~~~l~~~~~  275 (535)
                      .||+|+.++|-..+.+.-+=++..+.++++++++..+-+  +.-++|.+.+.
T Consensus        96 ~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~  147 (188)
T d1sc6a1          96 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA  147 (188)
T ss_dssp             HCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred             hccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHH
Confidence            899999999977765544446777788999988643333  45567777663

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.29  E-value=0.0001  Score=63.24  Aligned_cols=102  Identities=17%  Similarity=0.118  Sum_probs=60.5

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCC-------cEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccc
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNY-------PVILKEV--NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLT  216 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~-------~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~  216 (535)
                      ..||+|||+ |.+|..+|..|+..++       ...+++.  +.+.++.....        ......      .....+.
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~------~~~~~~~   69 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME--------LEDCAF------PLLAGLE   69 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH--------HHTTTC------TTEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh--------hhcccc------ccccccc
Confidence            458999997 9999999999998764       1334443  33333222110        011000      0011222


Q ss_pred             c-ccCcccccCCCEEEEec--cC------------ChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          217 G-VLDYESFKDVDMVIEAI--IE------------NVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       217 ~-~~~~~~~~~aDlVI~av--pe------------~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      . +.+++++++||+||.+.  |.            +..+.+++...+.++++++++++..|
T Consensus        70 ~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs  130 (154)
T d1y7ta1          70 ATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG  130 (154)
T ss_dssp             EESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cCCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence            2 33457899999999876  21            34566677778888888877554333

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.21  E-value=0.00031  Score=60.23  Aligned_cols=92  Identities=21%  Similarity=0.194  Sum_probs=66.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF-LEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|+|||.|.-|.+-|..|..+|++|++--+.... .+++           .+.|             +...+-.|+++.
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A-----------~~~G-------------f~v~~~~eA~~~   72 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKA-----------EAHG-------------LKVADVKTAVAA   72 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHH-----------HHTT-------------CEEECHHHHHHT
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHH-----------hhhc-------------cccccHHHHhhh
Confidence            68999999999999999999999999987775432 2222           1233             222223366899


Q ss_pred             CCEEEEeccCChHHHHHHHH-HHHhhcCCCceeeecCCcCc
Q 009395          227 VDMVIEAIIENVSLKQQIFA-DLEKYCPPHCILASNTSTID  266 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~-~l~~~~~~~~ii~s~tS~~~  266 (535)
                      +|+|...+|+.  .-.++++ +|.++++++..+. -+.++.
T Consensus        73 aDiim~L~PD~--~q~~vy~~~I~p~lk~g~~L~-FaHGfn  110 (182)
T d1np3a2          73 ADVVMILTPDE--FQGRLYKEEIEPNLKKGATLA-FAHGFS  110 (182)
T ss_dssp             CSEEEECSCHH--HHHHHHHHHTGGGCCTTCEEE-ESCCHH
T ss_pred             cCeeeeecchH--HHHHHHHHhhhhhcCCCcEEE-Eeccce
Confidence            99999999954  4467885 7999999998664 233443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.19  E-value=0.00031  Score=59.79  Aligned_cols=87  Identities=16%  Similarity=0.067  Sum_probs=62.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      +++.|+|.|..|.++|..+...|..|+++++||-..-++                        .++-....+-.++++.+
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA------------------------~mdGf~v~~~~~a~~~a   79 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA------------------------VMEGFNVVTLDEIVDKG   79 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH------------------------HTTTCEECCHHHHTTTC
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH------------------------HhcCCccCchhHccccC
Confidence            689999999999999999999999999999999653221                        11222222223568999


Q ss_pred             CEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          228 DMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      |++|.+......+    -.+-...+++++|++...
T Consensus        80 Di~vTaTGn~~vI----~~~h~~~MKdgaIl~N~G  110 (163)
T d1v8ba1          80 DFFITCTGNVDVI----KLEHLLKMKNNAVVGNIG  110 (163)
T ss_dssp             SEEEECCSSSSSB----CHHHHTTCCTTCEEEECS
T ss_pred             cEEEEcCCCCccc----cHHHHHHhhCCeEEEecc
Confidence            9999998653222    234455689999887544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.19  E-value=0.00029  Score=60.45  Aligned_cols=99  Identities=20%  Similarity=0.200  Sum_probs=64.9

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      +..||.|||+|..|..-++...+-|.+|+++|.+.+++++...    .+...++.-..+             ...+ +.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~----~~~~~~~~~~~~-------------~~~l~~~~   93 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET----LFGSRVELLYSN-------------SAEIETAV   93 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HHGGGSEEEECC-------------HHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHH----hhcccceeehhh-------------hhhHHHhh
Confidence            3468999999999999999999999999999999998865432    221111110000             1112 347


Q ss_pred             cCCCEEEEec--cCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          225 KDVDMVIEAI--IENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       225 ~~aDlVI~av--pe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ++||+||-++  |-... -+-+-++..+.++++.+|++.+
T Consensus        94 ~~aDivI~aalipG~~a-P~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1          94 AEADLLIGAVLVPGRRA-PILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             HTCSEEEECCCCTTSSC-CCCBCHHHHTTSCTTCEEEETT
T ss_pred             ccCcEEEEeeecCCccc-CeeecHHHHhhcCCCcEEEEee
Confidence            8999999987  22111 0112245566789999887654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=0.00036  Score=60.78  Aligned_cols=71  Identities=23%  Similarity=0.300  Sum_probs=51.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCcccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~~  226 (535)
                      ++|.|+|+|-++.+++..|...+.+|++++|+.++++...+.+.       ..+            .+... .+...+.+
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~~------------~~~~~~~~~~~~~~   79 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQAVSMDSIPLQT   79 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEEEGGGCCCSC
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hcc------------ccchhhhccccccc
Confidence            57999999999999999999888899999999988776543221       111            11111 12224678


Q ss_pred             CCEEEEeccCC
Q 009395          227 VDMVIEAIIEN  237 (535)
Q Consensus       227 aDlVI~avpe~  237 (535)
                      +|+||.|+|-.
T Consensus        80 ~diiIN~tp~g   90 (171)
T d1p77a1          80 YDLVINATSAG   90 (171)
T ss_dssp             CSEEEECCCC-
T ss_pred             cceeeeccccc
Confidence            99999999854

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=6e-05  Score=67.81  Aligned_cols=39  Identities=28%  Similarity=0.373  Sum_probs=35.6

Q ss_pred             CCcceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          145 RRVKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       145 ~~~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      +.++||.|+|+ |.+|+.++..|+++|++|++++|+++++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~   40 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL   40 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence            35889999995 9999999999999999999999998864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00052  Score=59.59  Aligned_cols=40  Identities=15%  Similarity=0.221  Sum_probs=36.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|+|+|-.+++++..|.+.|.+|++++|+.++.+...
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~   58 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA   58 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHH
Confidence            6899999999999999999999999999999999876544

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.11  E-value=0.00054  Score=59.31  Aligned_cols=39  Identities=23%  Similarity=0.202  Sum_probs=35.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~  186 (535)
                      ++|.|||+|-++.+++..|.+.|. +|++++|+.++.+..
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L   57 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYL   57 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHH
Confidence            579999999999999999999997 899999999987654

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.00055  Score=56.37  Aligned_cols=79  Identities=22%  Similarity=0.229  Sum_probs=54.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILK-EVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      +||+|+|+ |.||+.|+..+...|+++... |.+                                        ..+.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~----------------------------------------~~~~~~   40 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN----------------------------------------GVEELD   40 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT----------------------------------------EEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC----------------------------------------cHHHhc
Confidence            48999996 999999999999999987642 321                                        124467


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHH
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG  271 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  271 (535)
                      ++|+||+-..+  +...+.++...   ..+..+++.|++++-+++.
T Consensus        41 ~~DVvIDFS~p--~~~~~~l~~~~---~~~~p~ViGTTG~~~~~~~   81 (128)
T d1vm6a3          41 SPDVVIDFSSP--EALPKTVDLCK---KYRAGLVLGTTALKEEHLQ   81 (128)
T ss_dssp             CCSEEEECSCG--GGHHHHHHHHH---HHTCEEEECCCSCCHHHHH
T ss_pred             cCCEEEEecCH--HHHHHHHHHHH---hcCCCEEEEcCCCCHHHHH
Confidence            89999987643  33344444333   3355567788888776544

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.00  E-value=0.00055  Score=60.76  Aligned_cols=99  Identities=17%  Similarity=0.125  Sum_probs=65.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC------CcEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSN------YPVILKEVNE-KFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVL  219 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G------~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~  219 (535)
                      ++||+|||.|..|.+-|..|..+|      ..|++-=+.. ...+++.           +.|.-.        ......+
T Consensus        44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~-----------~dGf~v--------~~~~v~~  104 (226)
T d1qmga2          44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR-----------AAGFSE--------ENGTLGD  104 (226)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH-----------HTTCCG--------GGTCEEE
T ss_pred             CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH-----------HcCCcc--------CCCcccC
Confidence            589999999999999999999955      5566543322 2222222           333210        0001112


Q ss_pred             CcccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          220 DYESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       220 ~~~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      -.|+++.+|+|+..+|+.  .-.+++++|.++++++..+.- +-++.+
T Consensus       105 v~EAv~~ADiVmiLlPDe--~Q~~vy~~I~p~Lk~G~~L~F-aHGFnI  149 (226)
T d1qmga2         105 MWETISGSDLVLLLISDS--AQADNYEKVFSHMKPNSILGL-SHGFLL  149 (226)
T ss_dssp             HHHHHHTCSEEEECSCHH--HHHHHHHHHHHHSCTTCEEEE-SSSHHH
T ss_pred             HHHHHhhCCEEEEecchH--HHHHHHHHHHHhcCCCceeee-cchhhh
Confidence            235688999999999964  446788999999999987643 334544

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.00  E-value=0.0012  Score=51.33  Aligned_cols=37  Identities=32%  Similarity=0.564  Sum_probs=32.8

Q ss_pred             CCcceEEEEeCChhh-HHHHHHHHhCCCcEEEEeCCHH
Q 009395          145 RRVKKVAILGGGLMG-SGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG-~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ..+++|-|||.|-+| +++|..|...|++|+.+|....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            457899999999999 7779999999999999998743

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.99  E-value=0.002  Score=55.34  Aligned_cols=70  Identities=23%  Similarity=0.254  Sum_probs=47.1

Q ss_pred             ceEEEEeCChhhHH-HHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-c
Q 009395          148 KKVAILGGGLMGSG-IATALILS-NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-F  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~-iA~~l~~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~  224 (535)
                      .||+|||+|.||.. ....+.+. +.+++++|.+++..+...+.                      ++.....+++++ +
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~----------------------~~~~~~~~~~~~ll   59 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATR----------------------YRVSATCTDYRDVL   59 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHH----------------------TTCCCCCSSTTGGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh----------------------cccccccccHHHhc
Confidence            48999999999976 55566555 56888999999887654321                      111112345443 2


Q ss_pred             -cCCCEEEEeccCChH
Q 009395          225 -KDVDMVIEAIIENVS  239 (535)
Q Consensus       225 -~~aDlVI~avpe~~~  239 (535)
                       .+.|+|+.|+|.+..
T Consensus        60 ~~~iD~V~I~tp~~~H   75 (167)
T d1xeaa1          60 QYGVDAVMIHAATDVH   75 (167)
T ss_dssp             GGCCSEEEECSCGGGH
T ss_pred             ccccceeccccccccc
Confidence             368999999987644

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.90  E-value=0.0019  Score=49.27  Aligned_cols=65  Identities=22%  Similarity=0.182  Sum_probs=46.1

Q ss_pred             ceEEEEeCChhhH-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGLMGS-GIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~-~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      +||-|||.|-+|. ++|..|.++|++|...|+++...-.          .+.+.|.           .+....+.+.+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~----------~L~~~Gi-----------~i~~gh~~~~i~~   60 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTA----------YLRKLGI-----------PIFVPHSADNWYD   60 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHH----------HHHHTTC-----------CEESSCCTTSCCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHH----------HHHHCCC-----------eEEeeecccccCC
Confidence            5899999999987 7899999999999999998643221          1223342           1222344556788


Q ss_pred             CCEEEEe
Q 009395          227 VDMVIEA  233 (535)
Q Consensus       227 aDlVI~a  233 (535)
                      +|+||.+
T Consensus        61 ~d~vV~S   67 (89)
T d1j6ua1          61 PDLVIKT   67 (89)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEe
Confidence            9999875

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.87  E-value=0.001  Score=58.04  Aligned_cols=75  Identities=20%  Similarity=0.229  Sum_probs=51.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccccC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  226 (535)
                      ++|.|||+|-++++++..|.+.| +|++++|+.++.+...+.+...+....       .      ..+.. .++ ....+
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~-------~------~~~~~-~~~~~~~~~   83 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF-------G------EEVKF-SGLDVDLDG   83 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH-------H------HHEEE-ECTTCCCTT
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhh-------h------hhhhh-hhhhhccch
Confidence            57999999999999999998777 999999999998876655433221000       0      00111 222 23577


Q ss_pred             CCEEEEeccCC
Q 009395          227 VDMVIEAIIEN  237 (535)
Q Consensus       227 aDlVI~avpe~  237 (535)
                      +|+||.|+|-.
T Consensus        84 ~dliIn~tp~g   94 (177)
T d1nvta1          84 VDIIINATPIG   94 (177)
T ss_dssp             CCEEEECSCTT
T ss_pred             hhhhccCCccc
Confidence            89999998743

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.82  E-value=0.0026  Score=55.63  Aligned_cols=72  Identities=13%  Similarity=0.156  Sum_probs=48.9

Q ss_pred             eEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc--
Q 009395          149 KVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF--  224 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--  224 (535)
                      ||+|||+|.||...+..+... +++|+ ++|+++++.+...+          +.+. .        ...+..++++++  
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~----------~~~~-~--------~~~~~~~~~~~ll~   63 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFAT----------ANNY-P--------ESTKIHGSYESLLE   63 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH----------HTTC-C--------TTCEEESSHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchh----------cccc-c--------cceeecCcHHHhhh
Confidence            799999999999999888766 56766 67999987654431          1111 0        112234455442  


Q ss_pred             -cCCCEEEEeccCChH
Q 009395          225 -KDVDMVIEAIIENVS  239 (535)
Q Consensus       225 -~~aDlVI~avpe~~~  239 (535)
                       .+.|+|+.|.|....
T Consensus        64 ~~~iD~v~I~tp~~~h   79 (184)
T d1ydwa1          64 DPEIDALYVPLPTSLH   79 (184)
T ss_dssp             CTTCCEEEECCCGGGH
T ss_pred             ccccceeeecccchhh
Confidence             468999999987654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.81  E-value=0.00073  Score=62.78  Aligned_cols=42  Identities=24%  Similarity=0.262  Sum_probs=36.1

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      ||++| |+ +-||.++|..|++.|++|++.|++++.++...+.+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l   46 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL   46 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            68777 44 78999999999999999999999999988776554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.74  E-value=0.00083  Score=54.73  Aligned_cols=36  Identities=25%  Similarity=0.492  Sum_probs=33.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      ++|+|||+|.+|.-+|..|++.|.+|+++++++.-+
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM   66 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence            589999999999999999999999999999987644

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.73  E-value=0.0032  Score=50.29  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=52.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKDV  227 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~a  227 (535)
                      ++|.|||+|.+|..-|+.|++.|.+|++++.....-..          ...+.+.++         .+.-.-+.+++.++
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~~i~---------~~~~~~~~~dl~~~   73 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEGMLT---------LVEGPFDETLLDSC   73 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTTSCE---------EEESSCCGGGGTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcCCce---------eeccCCCHHHhCCC
Confidence            68999999999999999999999999999876542111          111222211         11111123568899


Q ss_pred             CEEEEeccCChHHHHHHHHH
Q 009395          228 DMVIEAIIENVSLKQQIFAD  247 (535)
Q Consensus       228 DlVI~avpe~~~~k~~v~~~  247 (535)
                      ++|+.|.. +..+...+.+.
T Consensus        74 ~lv~~at~-d~~~n~~i~~~   92 (113)
T d1pjqa1          74 WLAIAATD-DDTVNQRVSDA   92 (113)
T ss_dssp             SEEEECCS-CHHHHHHHHHH
T ss_pred             cEEeecCC-CHHHHHHHHHH
Confidence            99998864 45555555544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.72  E-value=0.01  Score=50.73  Aligned_cols=40  Identities=20%  Similarity=0.168  Sum_probs=36.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~   67 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK   67 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence            4799999999999999999999999999999999987664

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.71  E-value=0.00072  Score=61.91  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.8

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      +.+||+|||+|.+|.+.|..|+++|++|+++|++
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4578999999999999999999999999999985

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.60  E-value=0.0015  Score=57.74  Aligned_cols=43  Identities=28%  Similarity=0.262  Sum_probs=37.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      ++|.|.|+ |.+|..+|..|++.|.+|++.+|+.++++...+.+
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~   67 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV   67 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHH
Confidence            57888884 99999999999999999999999999987766544

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0008  Score=52.01  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=31.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      +||+|+|+|..|.++|..|.+.|.+|+++|.+..
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            5799999999999999999999999999998644

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.0019  Score=56.51  Aligned_cols=40  Identities=18%  Similarity=0.375  Sum_probs=35.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|||+|-+|.+++..|...|. ++++++|+++.++++.
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~   59 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKAL   59 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHH
Confidence            689999999999999999999997 7999999988777654

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0039  Score=53.30  Aligned_cols=69  Identities=9%  Similarity=-0.016  Sum_probs=45.5

Q ss_pred             ceEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          148 KKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      .||+|||+|.||.. ....+... +++++ ++|+++++.+...+.    +                   .+...+++++ 
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~----~-------------------~~~~~~~~~~l   58 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES----W-------------------RIPYADSLSSL   58 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH----H-------------------TCCBCSSHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhc----c-------------------cccccccchhh
Confidence            37999999999986 45555544 66654 789998876544321    0                   1122344443 


Q ss_pred             ccCCCEEEEeccCChH
Q 009395          224 FKDVDMVIEAIIENVS  239 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~  239 (535)
                      +.+.|+|+.|+|.+..
T Consensus        59 ~~~~D~V~I~tp~~~h   74 (164)
T d1tlta1          59 AASCDAVFVHSSTASH   74 (164)
T ss_dssp             HTTCSEEEECSCTTHH
T ss_pred             hhhcccccccccchhc
Confidence            4789999999987644

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.029  Score=48.44  Aligned_cols=40  Identities=23%  Similarity=0.091  Sum_probs=35.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~   70 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE   70 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccccccccc
Confidence            479999999999999999989997 7999999999987654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.46  E-value=0.0091  Score=51.81  Aligned_cols=70  Identities=16%  Similarity=0.132  Sum_probs=45.0

Q ss_pred             ceEEEEeCChhhHH-HHHHHHhCC--CcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGGGLMGSG-IATALILSN--YPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~-iA~~l~~~G--~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      .||+|||+|.||.. ....+.+.+  ++|+ ++|+++++.+...+.                      .+.....+++++
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~----------------------~~~~~~~~~~~e   61 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM----------------------VGNPAVFDSYEE   61 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH----------------------HSSCEEESCHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc----------------------ccccceeeeeec
Confidence            47999999999987 466666543  4555 789999886554321                      111223345544


Q ss_pred             -c--cCCCEEEEeccCChH
Q 009395          224 -F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       224 -~--~~aDlVI~avpe~~~  239 (535)
                       +  .+.|+|+.|+|.+..
T Consensus        62 ll~~~~id~v~I~tp~~~h   80 (181)
T d1zh8a1          62 LLESGLVDAVDLTLPVELN   80 (181)
T ss_dssp             HHHSSCCSEEEECCCGGGH
T ss_pred             cccccccceeecccccccc
Confidence             2  467889988886543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.45  E-value=0.00062  Score=59.16  Aligned_cols=41  Identities=17%  Similarity=0.121  Sum_probs=36.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      .-||.|||+|..|..-+.....-|..|+++|++++++++..
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~   69 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE   69 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence            46899999999999999999999999999999998876654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.40  E-value=0.0018  Score=59.89  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=36.6

Q ss_pred             ceEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       148 ~kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      |||++| |+ +-+|.++|..|++.|++|++.|++++.++...+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   45 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI   45 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            578766 55 77999999999999999999999999887766544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.36  E-value=0.00068  Score=54.68  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=31.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ++++|||+|..|.-+|..|.+.|.+|+++++.+.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            6899999999999999999999999999998754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.33  E-value=0.0012  Score=60.85  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      +.+||+|||+|.-|...|..|+++|++|+++|++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457999999999999999999999999999998754

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.30  E-value=0.016  Score=51.92  Aligned_cols=74  Identities=14%  Similarity=0.106  Sum_probs=47.0

Q ss_pred             ceEEEEeCChhhHH-HHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc-
Q 009395          148 KKVAILGGGLMGSG-IATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES-  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~-iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-  223 (535)
                      -||+|||+|.||.. +...+... +++|+ ++|+++++++...+.          .| +..       ..+...+|+++ 
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~----------~~-i~~-------~~~~~~~d~~el   95 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE----------YG-VDP-------RKIYDYSNFDKI   95 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH----------TT-CCG-------GGEECSSSGGGG
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh----------hc-ccc-------ccccccCchhhh
Confidence            47999999999975 44555444 66766 889999987654321          11 110       11222355554 


Q ss_pred             c--cCCCEEEEeccCChH
Q 009395          224 F--KDVDMVIEAIIENVS  239 (535)
Q Consensus       224 ~--~~aDlVI~avpe~~~  239 (535)
                      +  .+.|+|+.|+|....
T Consensus        96 l~~~~iD~V~I~tp~~~H  113 (221)
T d1h6da1          96 AKDPKIDAVYIILPNSLH  113 (221)
T ss_dssp             GGCTTCCEEEECSCGGGH
T ss_pred             cccccceeeeeccchhhh
Confidence            3  368999999986543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0019  Score=54.34  Aligned_cols=98  Identities=14%  Similarity=0.271  Sum_probs=56.1

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          147 VKKVAILGG-GLMGSGIATALILS-NY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~-G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      |+||+|||+ |..|.-+...|+.+ .+   +++.+..+...-.                 .+..   ...........+.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~-----------------~~~~---~~~~~~~~~~~~~   60 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQA-----------------APSF---GGTTGTLQDAFDL   60 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSB-----------------CCGG---GTCCCBCEETTCH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccc-----------------cccc---cCCceeeecccch
Confidence            569999999 99999999866654 33   5666654432110                 0000   0000001111233


Q ss_pred             ccccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          222 ESFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       222 ~~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      +.+.++|++|.|+|.+.  -+++..++.+ ...++++++++|..-.
T Consensus        61 ~~~~~~DivF~a~~~~~--s~~~~~~~~~-~g~~~~VID~Ss~fR~  103 (146)
T d1t4ba1          61 EALKALDIIVTCQGGDY--TNEIYPKLRE-SGWQGYWIDAASSLRM  103 (146)
T ss_dssp             HHHHTCSEEEECSCHHH--HHHHHHHHHH-TTCCCEEEECSSTTTT
T ss_pred             hhhhcCcEEEEecCchH--HHHhhHHHHh-cCCCeecccCCccccc
Confidence            45789999999998543  3444444433 2344678899986543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0019  Score=56.33  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=33.1

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      +-+||+|||+|..|..-|..++++||+|+++|.++.
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            357999999999999999999999999999998764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.18  E-value=0.0026  Score=60.12  Aligned_cols=59  Identities=20%  Similarity=0.252  Sum_probs=44.1

Q ss_pred             HHHhcCHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          110 QKLLRSETCKSLVHIFFAQRGTSKVPGVTDLGLAPRRVKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       110 ~~~~~s~e~~~~i~aF~~kr~~~~~~~~~~~~~~~~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      ..|+..++..+.++-....-++            +...+||+|||+|..|.+.|..|+++|++|+++|.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~------------~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1           5 AECFQENDYEEFLEIARNGLKA------------TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             GGGGCCTTHHHHHHHHHHCSCC------------CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             HhhcCCccHHHHHHHHhcCCCC------------CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4577778776665543321111            1234689999999999999999999999999999764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0015  Score=48.34  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=32.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      +++|+|||+|..|+.++....+-|++|.++|.+++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            57999999999999999999999999999998654

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.98  E-value=0.0066  Score=57.95  Aligned_cols=90  Identities=13%  Similarity=0.095  Sum_probs=57.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          148 KKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      ++++|||+|.++...+..++.. .+ +|.+|++++++.+...+...       ..+.            ....++.+++.
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~-------~~~~------------~~~~~~~~a~~  186 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE-------DRGI------------SASVQPAEEAS  186 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHH-------HTTC------------CEEECCHHHHT
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHH-------hcCC------------ccccchhhhhc
Confidence            4799999999999998877643 33 89999999998876654322       1110            11123345678


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      +||+|+.|++....+..      .+.+++++.|....
T Consensus       187 ~aDiV~taT~s~~P~~~------~~~l~~G~hv~~iG  217 (320)
T d1omoa_         187 RCDVLVTTTPSRKPVVK------AEWVEEGTHINAIG  217 (320)
T ss_dssp             SSSEEEECCCCSSCCBC------GGGCCTTCEEEECS
T ss_pred             cccEEEEeccCcccccc------hhhcCCCCeEeecC
Confidence            99999998875433211      13456666554433

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.98  E-value=0.0027  Score=55.49  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~  181 (535)
                      +||+|||+|..|...|..|+++|+ +|+++++++.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            689999999999999999999999 5999998754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.048  Score=46.36  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=35.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|. +|++.|+++++++.+.
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~   68 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK   68 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence            479999999999999999999998 7999999999987654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.93  E-value=0.0098  Score=52.58  Aligned_cols=39  Identities=13%  Similarity=0.245  Sum_probs=35.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++|+|-|.|.+|..+|..|.+.|..|+++|.+++.+...
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~   66 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA   66 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence            589999999999999999999999999999999887643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.91  E-value=0.0022  Score=51.76  Aligned_cols=35  Identities=14%  Similarity=0.263  Sum_probs=32.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      .+||+|||+|.+|.-+|..|++.|.+|+++++.+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            36899999999999999999999999999998643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.022  Score=47.69  Aligned_cols=36  Identities=8%  Similarity=-0.061  Sum_probs=33.2

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKFLE  184 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~  184 (535)
                      +|.|+|.|.+|..++..|...|++|+++|.+++...
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~   40 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDI   40 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHH
Confidence            699999999999999999999999999999987643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.88  E-value=0.0028  Score=58.72  Aligned_cols=32  Identities=34%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      .|.|||+|.+|.++|..|+++|++|+++|+++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            39999999999999999999999999999864

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.88  E-value=0.0022  Score=51.64  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=32.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      ++|+|||+|.+|.-+|..+.+.|.+|+++++.+.-
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            68999999999999999999999999999987653

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0019  Score=52.05  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      +||+|||+|..|.-+|..|.+.|.+|+++++.+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            5899999999999999999999999999999754

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.83  E-value=0.01  Score=50.27  Aligned_cols=98  Identities=19%  Similarity=0.255  Sum_probs=53.9

Q ss_pred             ceEEEEeCChhhHHH-HHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHhhhcccccccCccc
Q 009395          148 KKVAILGGGLMGSGI-ATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMT-QEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~G~mG~~i-A~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~  223 (535)
                      .||+|||+|.+|+.+ ...+... ..+++ +.+++++......         ..+.|.-. ....+..       .+..+
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~---------a~~~~i~~~~~~~d~l-------~~~~~   68 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLAR---------AQRMGVTTTYAGVEGL-------IKLPE   68 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHH---------HHHTTCCEESSHHHHH-------HHSGG
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhh---------hhhcCCcccccceeee-------eeccc
Confidence            489999999999864 5555444 34555 4588765321110         01122100 0000000       01113


Q ss_pred             ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          224 FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       224 ~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      ..+.|+|+.|+|..........   ...++.++.+++++|.
T Consensus        69 ~~~iDiVf~ATpag~h~~~~~~---~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          69 FADIDFVFDATSASAHVQNEAL---LRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             GGGEEEEEECSCHHHHHHHHHH---HHHHCTTCEEEECSTT
T ss_pred             ccccCEEEEcCCchhHHHhHHH---HHHHHcCCEEEEcccc
Confidence            4679999999986555443332   2335778889999883

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.002  Score=52.38  Aligned_cols=34  Identities=24%  Similarity=0.477  Sum_probs=32.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ++++|||+|.+|.-+|..|++.|.+|+++++++.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            6899999999999999999999999999998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.79  E-value=0.0041  Score=50.51  Aligned_cols=35  Identities=23%  Similarity=0.449  Sum_probs=32.3

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      .++|+|||+|.+|.-+|..|++.|.+|+++++.+.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            46899999999999999999999999999998754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0054  Score=56.65  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=35.5

Q ss_pred             eEE-EEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Q 009395          149 KVA-ILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVR  191 (535)
Q Consensus       149 kV~-vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~  191 (535)
                      |++ |.|+ +.+|.++|..|++.|++|+++++++++++.+.+.++
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~   55 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK   55 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            455 5555 899999999999999999999999999887765443

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.032  Score=52.34  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=34.2

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      .+.|.|+ +-+|.++|..|++.|++|++.|++.+.++...+.
T Consensus        14 valITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~e   55 (297)
T d1yxma1          14 VAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADE   55 (297)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            4445565 7899999999999999999999999988776543

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.63  E-value=0.006  Score=52.48  Aligned_cols=64  Identities=17%  Similarity=0.255  Sum_probs=43.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-ccc
Q 009395          148 KKVAILGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ESF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~  224 (535)
                      .||+|||+|.||+..+..+... +++++ ++|++++....                           .......+. +..
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~   56 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHA   56 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTT
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhc
Confidence            4799999999999999988765 56654 67887553210                           011222333 335


Q ss_pred             cCCCEEEEeccCCh
Q 009395          225 KDVDMVIEAIIENV  238 (535)
Q Consensus       225 ~~aDlVI~avpe~~  238 (535)
                      .+.|+|++|.|...
T Consensus        57 ~~~D~Vvi~tp~~~   70 (170)
T d1f06a1          57 DDVDVLFLCMGSAT   70 (170)
T ss_dssp             TTCSEEEECSCTTT
T ss_pred             cccceEEEeCCCcc
Confidence            78999999998764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.62  E-value=0.0057  Score=56.68  Aligned_cols=42  Identities=21%  Similarity=0.234  Sum_probs=35.8

Q ss_pred             eEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       149 kV~vI--G~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      ||++|  |++-+|.++|..|++.|++|++.|++++.+++..+.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l   49 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   49 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            67777  4589999999999999999999999999987765443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.62  E-value=0.099  Score=48.51  Aligned_cols=42  Identities=26%  Similarity=0.395  Sum_probs=35.3

Q ss_pred             eEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       149 kV~vI-G-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      |++|| | +|.+|.++|..|+++|++|++.|++.+.++...+.+
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l   69 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI   69 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            55555 4 599999999999999999999999999887766544

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.55  E-value=0.005  Score=58.63  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=32.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      .+||+|||+|.-|.+.|..|+++|++|++++.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            47999999999999999999999999999997643

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0052  Score=48.90  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      ..||+|||+|..|..++....+-|++|.++|.+++.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            358999999999999999999999999999998764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.53  E-value=0.0039  Score=57.77  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=31.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      |||+|||+|.-|.+-|..|+++|++|+++|.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            689999999999999999999999999999754

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.52  E-value=0.011  Score=54.21  Aligned_cols=42  Identities=21%  Similarity=0.282  Sum_probs=35.0

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      .+.|.|+ +-||.++|..|++.|++|++.|++++.++...+.+
T Consensus         7 ~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l   49 (251)
T d1vl8a_           7 VALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL   49 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4555566 78999999999999999999999999887765544

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.51  E-value=0.0091  Score=55.06  Aligned_cols=41  Identities=29%  Similarity=0.301  Sum_probs=34.1

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      .+.|.|+ +-||.++|..|++.|++|++.|++++.++...+.
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~   47 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAA   47 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            3444466 7899999999999999999999999988776544

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0089  Score=51.13  Aligned_cols=40  Identities=25%  Similarity=0.125  Sum_probs=34.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|.+|++.|.++++.+.+.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~   71 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK   71 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHh
Confidence            4799999999999999888889999999999998876543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.46  E-value=0.0048  Score=57.03  Aligned_cols=33  Identities=30%  Similarity=0.470  Sum_probs=30.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      ++|+|||+|.-|.+.|..|+++|++|++++.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            479999999999999999999999999999764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0076  Score=55.09  Aligned_cols=40  Identities=28%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      |++|| |+ +-||.++|..|++.|++|++.|++++.++...+
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~   46 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD   46 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            56666 55 789999999999999999999999998876543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.43  E-value=0.023  Score=46.68  Aligned_cols=82  Identities=11%  Similarity=0.158  Sum_probs=49.9

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccccc
Q 009395          149 KVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFK  225 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~  225 (535)
                      ||+|+|+ |.||..++..+.+. ++++. .+|+.... .                                    .....
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~-~------------------------------------~~~~~   43 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL-S------------------------------------LLTDG   43 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT-H------------------------------------HHHTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch-h------------------------------------hhccc
Confidence            7999995 99999999876654 66655 34532110 0                                    00124


Q ss_pred             CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHHh
Q 009395          226 DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIGE  272 (535)
Q Consensus       226 ~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~~  272 (535)
                      ++|+||+-..++  ...+.++   ..+..+..+++-|++++.+++..
T Consensus        44 ~~DvvIDFS~p~--~~~~~~~---~~~~~~~~~ViGTTG~~~~~~~~   85 (135)
T d1yl7a1          44 NTEVVIDFTHPD--VVMGNLE---FLIDNGIHAVVGTTGFTAERFQQ   85 (135)
T ss_dssp             TCSEEEECCCTT--THHHHHH---HHHHTTCEEEECCCCCCHHHHHH
T ss_pred             cCCEEEEcccHH--HHHHHHH---HHHhcCCCEEEeccccchhHHHH
Confidence            689999976432  2233333   33345666777888888665443

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.38  E-value=0.0038  Score=50.42  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=31.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ++|+|||+|.+|.-+|..|++.|.+|+++.+++.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            6899999999999999999999999999998754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.37  E-value=0.0084  Score=48.51  Aligned_cols=32  Identities=16%  Similarity=0.078  Sum_probs=30.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      ++++|||+|.+|.-+|..|.+.|.+|+++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999999876

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.011  Score=53.99  Aligned_cols=41  Identities=22%  Similarity=0.199  Sum_probs=34.1

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      .|.|.|+ +-+|.++|..|+++|.+|+++|++++.++...+.
T Consensus         9 v~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~   50 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAK   50 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            3444466 6699999999999999999999999998776543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.32  E-value=0.0065  Score=49.14  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=31.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ++|+|||+|.+|.-+|..|++.|++|+++++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            5799999999999999999999999999998754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.26  E-value=0.0044  Score=57.81  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      +|+|||+|.-|..+|..|+++|++|+++|++++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            6999999999999999999999999999998653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0047  Score=50.29  Aligned_cols=34  Identities=21%  Similarity=0.241  Sum_probs=31.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ++|+|||+|.+|.-+|..|.+.|.+|+++++++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            6899999999999999999999999999999753

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.22  E-value=0.073  Score=48.40  Aligned_cols=40  Identities=30%  Similarity=0.286  Sum_probs=34.4

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ||++| |+ +-+|.++|..|++.|++|+++|++++.++...+
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~   52 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVD   52 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            66666 65 789999999999999999999999998876654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.20  E-value=0.0079  Score=49.47  Aligned_cols=36  Identities=28%  Similarity=0.577  Sum_probs=32.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      ++|+|||+|.+|.-+|..+++.|.+|+++++.+.-+
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL   71 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence            589999999999999999999999999999976543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.19  E-value=0.036  Score=50.66  Aligned_cols=39  Identities=26%  Similarity=0.322  Sum_probs=32.9

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      |++|| |+ +-||.++|..|++.|++|++.|++++.++...
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~   47 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA   47 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            45555 55 78999999999999999999999998876654

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.10  E-value=0.048  Score=49.53  Aligned_cols=39  Identities=18%  Similarity=0.225  Sum_probs=32.4

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      .+.|.|+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         8 ~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   47 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA   47 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            3444466 78999999999999999999999998876543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.06  E-value=0.0086  Score=57.25  Aligned_cols=36  Identities=33%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCC--CcEEEEeCCHH
Q 009395          146 RVKKVAILGGGLMGSGIATALILSN--YPVILKEVNEK  181 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G--~~V~l~d~~~~  181 (535)
                      .|+||+|||+|.-|...|..|++.|  ++|++++++..
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            5889999999999999999998876  59999999853

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.01  Score=55.60  Aligned_cols=35  Identities=31%  Similarity=0.406  Sum_probs=31.7

Q ss_pred             CcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          146 RVKKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       146 ~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      +-.||+|||+|.-|.+-|..|+++|++|++++.+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34689999999999999999999999999999753

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.068  Score=48.67  Aligned_cols=40  Identities=30%  Similarity=0.282  Sum_probs=33.7

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      |+++| |+ +-+|.++|..|++.|.+|++.|++.+.++...+
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   45 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKA   45 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45555 66 789999999999999999999999998876654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.064  Score=49.30  Aligned_cols=41  Identities=22%  Similarity=0.266  Sum_probs=34.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      +++.|.|+ +-||.++|..|++.|++|++.+|+++.++...+
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45556676 679999999999999999999999999877653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.90  E-value=0.0086  Score=47.99  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=28.9

Q ss_pred             ceEEEEeCChhhHHHHHHHH---hCCCcEEEEeCCHHHH
Q 009395          148 KKVAILGGGLMGSGIATALI---LSNYPVILKEVNEKFL  183 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~---~~G~~V~l~d~~~~~~  183 (535)
                      ++|+|||+|.+|.-+|..+.   .+|.+|+++++.+.-+
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            68999999999999996554   4567899999875443

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.90  E-value=0.011  Score=51.17  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=27.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC-CcEEEE-eCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSN-YPVILK-EVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~-d~~~~  181 (535)
                      |-||+|.|.|.||+.+++.+..+. ++|+.+ |.++.
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~   37 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPN   37 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCS
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCc
Confidence            458999999999999999998764 676654 55544

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.84  E-value=0.0095  Score=55.84  Aligned_cols=32  Identities=19%  Similarity=0.594  Sum_probs=29.5

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      +|.|||+|.+|.++|..|++.|. +|+++|+++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            69999999999999999999996 799999863

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.83  E-value=0.01  Score=47.62  Aligned_cols=36  Identities=11%  Similarity=0.136  Sum_probs=32.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      -++|+|||+|.+|.-+|..|++.|.+|+++++.+.-
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            368999999999999999999999999999987643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.80  E-value=0.12  Score=47.15  Aligned_cols=41  Identities=24%  Similarity=0.201  Sum_probs=35.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      |++.|.|+ +-||.++|..|++.|++|++.+++++.++.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~   48 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE   48 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45677775 889999999999999999999999988876653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.054  Score=49.32  Aligned_cols=38  Identities=29%  Similarity=0.337  Sum_probs=32.3

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      .+.|.|+ +-||.++|..|++.|++|++.|++++.++..
T Consensus         8 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~   46 (250)
T d1ydea1           8 VVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL   46 (250)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4555565 8999999999999999999999999887654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.69  E-value=0.023  Score=52.22  Aligned_cols=42  Identities=24%  Similarity=0.230  Sum_probs=34.9

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      .+.|.|+ +-||.++|..|++.|++|++.|++++.++...+.+
T Consensus        10 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~   52 (259)
T d2ae2a_          10 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW   52 (259)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4455566 77999999999999999999999999987765443

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.69  E-value=0.005  Score=49.97  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=32.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      ++++|||+|.+|.-+|..+.+.|.+|+++.+++.-
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            68999999999999999999999999999987654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.64  E-value=0.1  Score=44.50  Aligned_cols=40  Identities=20%  Similarity=0.132  Sum_probs=35.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|. +|++.|.++++++.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~   69 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK   69 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence            369999999999999999988897 7999999999887654

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.013  Score=49.94  Aligned_cols=104  Identities=17%  Similarity=0.052  Sum_probs=58.0

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc-
Q 009395          147 VKKVAILGG-GLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE-  222 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-  222 (535)
                      ..||+|+|+ |.||+.++..+.+. +++++ .+|+.....-.            ...|.+..    .....+..+.+++ 
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g------------~d~~~~~~----~~~~~~~~~~~~~~   67 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELAG----AGKTGVTVQSSLDA   67 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSSS----SSCCSCCEESCSTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhcc------------chhhhhhc----cccCCceeeccHHH
Confidence            468999996 99999999988766 56654 45553221000            00010000    0001123344554 


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHHHHH
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLNLIG  271 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~~l~  271 (535)
                      .+..+|+||+-..  ++...+.   +......+.-+++-|++++-+++.
T Consensus        68 ~~~~~DViIDFs~--p~~~~~~---~~~a~~~~~~~ViGTTG~~~~~~~  111 (162)
T d1diha1          68 VKDDFDVFIDFTR--PEGTLNH---LAFCRQHGKGMVIGTTGFDEAGKQ  111 (162)
T ss_dssp             TTTSCSEEEECSC--HHHHHHH---HHHHHHTTCEEEECCCCCCHHHHH
T ss_pred             HhcccceEEEecc--HHHHHHH---HHHHHhccceeEEecCCCcHHHHH
Confidence            3678999998764  3333333   333344566677788888766543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.62  E-value=0.018  Score=52.33  Aligned_cols=40  Identities=18%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      |++.|.|+ +-+|.++|..|++.|++|++.|++++.++...
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~   46 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAA   46 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            34555566 77999999999999999999999998876553

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.59  E-value=0.012  Score=52.86  Aligned_cols=32  Identities=22%  Similarity=0.452  Sum_probs=29.6

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      ||+|||+|.-|.+.|..|+++|+ +|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            79999999999999999999997 799999864

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.58  E-value=0.05  Score=43.28  Aligned_cols=73  Identities=18%  Similarity=0.240  Sum_probs=52.4

Q ss_pred             ceEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ++|+|||+    +..|..+...|.+.||+|+.++.+.+.+                             ..+.+..++++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~~   52 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVRE   52 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----------------------------cCccccccchh
Confidence            57999995    6789999999999999988887654322                             12334455666


Q ss_pred             cc-CCCEEEEeccCChHHHHHHHHHHHhh
Q 009395          224 FK-DVDMVIEAIIENVSLKQQIFADLEKY  251 (535)
Q Consensus       224 ~~-~aDlVI~avpe~~~~k~~v~~~l~~~  251 (535)
                      +. ..|+++.++|.  +...+++++..+.
T Consensus        53 lp~~~D~vvi~vp~--~~~~~~l~~~~~~   79 (116)
T d1y81a1          53 LPKDVDVIVFVVPP--KVGLQVAKEAVEA   79 (116)
T ss_dssp             SCTTCCEEEECSCH--HHHHHHHHHHHHT
T ss_pred             ccccceEEEEEeCH--HHHHHHHHHHHhc
Confidence            64 56999999984  4556777776543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=94.57  E-value=0.028  Score=51.60  Aligned_cols=41  Identities=32%  Similarity=0.377  Sum_probs=32.2

Q ss_pred             eEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHHHHH
Q 009395          149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVN-EKFLEAGIGR  189 (535)
Q Consensus       149 kV~vI-G-~G~mG~~iA~~l~~~G~~V~l~d~~-~~~~~~~~~~  189 (535)
                      |+++| | ++-||.++|..|++.|++|++.+++ .+.++...+.
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~   48 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAG   48 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH
Confidence            56666 4 4779999999999999999999997 5556555433

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.55  E-value=0.064  Score=50.97  Aligned_cols=40  Identities=20%  Similarity=0.196  Sum_probs=35.0

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      -++|.|.|+ |.+|+.++..|+++|++|+...|+.+..+..
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~   51 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL   51 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH
Confidence            478999987 9999999999999999999999998765443

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.55  E-value=0.013  Score=54.14  Aligned_cols=30  Identities=23%  Similarity=0.351  Sum_probs=28.9

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      |.|||+|.+|.+.|..|+++|++|+++|..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            899999999999999999999999999975

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.53  E-value=0.0028  Score=57.24  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=25.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEE
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVIL  175 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l  175 (535)
                      +||+|||+|.+|.+.|..|+++|++|++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v   28 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQ   28 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceE
Confidence            5899999999999999999999986543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.026  Score=51.68  Aligned_cols=42  Identities=24%  Similarity=0.434  Sum_probs=35.4

Q ss_pred             eEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       149 kV~vI-G-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      |++|| | ++-+|.++|..|++.|++|++.+++++.+++..+.+
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l   55 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI   55 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            56666 4 488999999999999999999999999887766544

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.46  E-value=0.026  Score=51.91  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=34.3

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      .+.|.|+ +-+|.++|..|++.|++|++.|++++.++...+.
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEAS   48 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            4455566 7799999999999999999999999988776544

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=94.44  E-value=0.036  Score=46.08  Aligned_cols=97  Identities=19%  Similarity=0.307  Sum_probs=55.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhC-CC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          148 KKVAILGG-GLMGSGIATALILS-NY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~-G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      +||+|||+ |..|.-+.+.|..+ .|   ++..+.-+...                  |....  .......+....+.+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~------------------gk~~~--~~~~~~~~~~~~~~~   60 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG------------------VPAPN--FGKDAGMLHDAFDIE   60 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS------------------SBCCC--SSSCCCBCEETTCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc------------------ccccc--cCCcceeeecccchh
Confidence            48999998 99999999877654 34   45544433211                  11100  000000111112334


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      .++++|+||.|+|..  +-+++..++.+. ..++++++++|..-+
T Consensus        61 ~~~~~DvvF~alp~~--~s~~~~~~l~~~-g~~~~VIDlSsdfR~  102 (147)
T d1mb4a1          61 SLKQLDAVITCQGGS--YTEKVYPALRQA-GWKGYWIDAASTLRM  102 (147)
T ss_dssp             HHTTCSEEEECSCHH--HHHHHHHHHHHT-TCCSEEEESSSTTTT
T ss_pred             hhccccEEEEecCch--HHHHHhHHHHHc-CCceEEEeCCccccc
Confidence            578999999999865  335555555432 334678899987643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.44  E-value=0.015  Score=53.74  Aligned_cols=40  Identities=18%  Similarity=0.282  Sum_probs=33.2

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      .+.|.|+ +-+|.++|..|++.|++|++.|++++.+++..+
T Consensus         8 valITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   48 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCN   48 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            3444465 789999999999999999999999998876553

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.42  E-value=0.098  Score=42.91  Aligned_cols=87  Identities=13%  Similarity=0.040  Sum_probs=60.0

Q ss_pred             cceEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc
Q 009395          147 VKKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE  222 (535)
Q Consensus       147 ~~kV~vIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  222 (535)
                      .++|+|||+    +..|..++..|.++||+|+.++...+.+                             ..+.+..+++
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----------------------------~G~~~~~sl~   69 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----------------------------LGRKCYPSVL   69 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----------------------------CCCccccccc
Confidence            468999997    5789999999999999998888653322                             1123345566


Q ss_pred             ccc-CCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc
Q 009395          223 SFK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (535)
Q Consensus       223 ~~~-~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  266 (535)
                      ++. ..|+|+.++|  ++...++++++.+.- ...++ ...++..
T Consensus        70 dlp~~iD~v~i~vp--~~~~~~~~~e~~~~g-~k~v~-~~~G~~~  110 (139)
T d2d59a1          70 DIPDKIEVVDLFVK--PKLTMEYVEQAIKKG-AKVVW-FQYNTYN  110 (139)
T ss_dssp             GCSSCCSEEEECSC--HHHHHHHHHHHHHHT-CSEEE-ECTTCCC
T ss_pred             ccCccceEEEEEeC--HHHHHHHHHHHHHhC-CCEEE-EeccccC
Confidence            654 6899999997  456678888776643 33443 3454444

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.014  Score=54.89  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=31.6

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      |..|.|||+|.-|.++|..|+++|++|++++.+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            45799999999999999999999999999997643

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.39  E-value=0.027  Score=48.30  Aligned_cols=35  Identities=31%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCC-CcEEEE-eCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSN-YPVILK-EVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G-~~V~l~-d~~~~  181 (535)
                      |+||+|-|.|.+|+.+.+.+...+ ++|+.+ |+++.
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~   37 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD   37 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH
Confidence            579999999999999999887775 566644 55543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.37  E-value=0.017  Score=53.22  Aligned_cols=42  Identities=14%  Similarity=0.109  Sum_probs=34.1

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      ++.|.|+ +-+|.++|..|++.|++|++.|++.+.+++..+.+
T Consensus        11 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~   53 (260)
T d1h5qa_          11 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV   53 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            3445565 77999999999999999999999988877665544

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.34  E-value=0.026  Score=52.25  Aligned_cols=41  Identities=20%  Similarity=0.170  Sum_probs=34.5

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      |++|| |+ +-||.++|..|++.|++|++.|++++.++...+.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~   48 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQI   48 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45555 55 8899999999999999999999999988776544

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.28  E-value=0.032  Score=51.65  Aligned_cols=42  Identities=24%  Similarity=0.280  Sum_probs=34.8

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      |++|| |+ +-+|.++|..|++.|++|++.|++++.++...+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i   48 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI   48 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            45555 55 78999999999999999999999999887766543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.18  E-value=0.11  Score=46.85  Aligned_cols=39  Identities=13%  Similarity=0.262  Sum_probs=32.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      |++.|.|+ +.+|.++|..|+++|++|++.+++.+.++..
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   45 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   45 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            34556676 6799999999999999999999999877544

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=94.15  E-value=0.04  Score=52.55  Aligned_cols=72  Identities=17%  Similarity=0.211  Sum_probs=48.7

Q ss_pred             cceEEEEeCChhhHHHHHHHH-hCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-cc
Q 009395          147 VKKVAILGGGLMGSGIATALI-LSNY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-ES  223 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~-~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~  223 (535)
                      .++++|||+|.++..-+..+. ..++ +|.+||+++++.++..+++..      ..|.           .+....+. ++
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~------~~g~-----------~v~~~~s~~ea  190 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSGL-----------TIRRASSVAEA  190 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTTC-----------EEEECSSHHHH
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhh------ccCC-----------CceecCCHHHH
Confidence            357999999999998877664 3355 899999999988766533210      0010           23334455 45


Q ss_pred             ccCCCEEEEecc
Q 009395          224 FKDVDMVIEAII  235 (535)
Q Consensus       224 ~~~aDlVI~avp  235 (535)
                      +++||+|+.|.+
T Consensus       191 v~~ADIi~t~Ta  202 (340)
T d1x7da_         191 VKGVDIITTVTA  202 (340)
T ss_dssp             HTTCSEEEECCC
T ss_pred             HhcCCceeeccc
Confidence            788999988774

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.13  E-value=0.018  Score=51.88  Aligned_cols=37  Identities=38%  Similarity=0.524  Sum_probs=33.6

Q ss_pred             CCcceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          145 RRVKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ..-++|+|||+|.-|...|..+++.|++|++++.+++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            3457999999999999999999999999999998764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.10  E-value=0.0095  Score=48.40  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=32.5

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      .++++|||+|.+|.-+|..+.+.|.+|+++++.+.-
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            368999999999999999999999999999987543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.09  E-value=0.11  Score=47.28  Aligned_cols=40  Identities=20%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      ++.|.|+ +-+|.++|..|++.|++|++.|++++.++...+
T Consensus         7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (256)
T d1k2wa_           7 TALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAA   47 (256)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            3445565 889999999999999999999999988776543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.05  E-value=0.05  Score=46.48  Aligned_cols=40  Identities=20%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCc-EEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYP-VILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~-V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|.. |++.|.++++++.+.
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~   70 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK   70 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence            5799999999999999988888885 556799999887654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.05  E-value=0.049  Score=46.02  Aligned_cols=40  Identities=23%  Similarity=0.143  Sum_probs=35.9

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|.+|+..|+++++++.++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~   68 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR   68 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence            4799999999999999998899999999999999887553

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.02  E-value=0.038  Score=50.68  Aligned_cols=41  Identities=20%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      |+++| |+ +-+|.++|..|++.|++|++.+++++.++...+.
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~   51 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSK   51 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45555 55 7899999999999999999999999988776543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.97  E-value=0.14  Score=46.59  Aligned_cols=39  Identities=28%  Similarity=0.313  Sum_probs=33.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      |++.|.|+ +-||.++|..|++.|++|++.|++++.++..
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~   45 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT   45 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            35666666 6799999999999999999999999887654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.85  E-value=0.023  Score=50.48  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=29.8

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      |.|||+|.-|...|..|+++|++|+++|.++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            8999999999999999999999999999975

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.21  Score=42.21  Aligned_cols=40  Identities=13%  Similarity=0.080  Sum_probs=34.5

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+ |.+|....+.+...|.+|+..+.++++.+.++
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~   70 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL   70 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEeccccccccccccccccCccccccccccccccccc
Confidence            47999996 99999999988889999999999988776543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.76  E-value=0.019  Score=49.42  Aligned_cols=40  Identities=15%  Similarity=0.230  Sum_probs=35.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|. .|++.|+++++++.+.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~   70 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK   70 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence            479999999999999999999997 6888999999877654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.72  E-value=0.042  Score=50.09  Aligned_cols=39  Identities=28%  Similarity=0.302  Sum_probs=33.3

Q ss_pred             eEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       149 kV~vI-G-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      |+++| | ++-||.++|..|++.|++|++.|++++.++...
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~   47 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAA   47 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            56666 5 488999999999999999999999998877654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.68  E-value=0.11  Score=44.41  Aligned_cols=40  Identities=15%  Similarity=0.224  Sum_probs=36.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      ..|+|+|+|.+|...++.+...|. +|++.|+++++++.+.
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak   71 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM   71 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHH
Confidence            469999999999999999999995 7999999999988765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.65  E-value=0.024  Score=48.30  Aligned_cols=40  Identities=23%  Similarity=0.127  Sum_probs=35.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|.+|+++|+++++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~   68 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM   68 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence            5799999999999988888788999999999999887654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.63  E-value=0.021  Score=52.25  Aligned_cols=34  Identities=29%  Similarity=0.329  Sum_probs=31.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~  181 (535)
                      .+|+|||+|.-|...|..|.++|+ +|++++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            479999999999999999999996 8999999764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.05  Score=49.34  Aligned_cols=41  Identities=20%  Similarity=0.265  Sum_probs=34.7

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      |++.|.|+ +-+|.++|..|++.|++|++.|++++.++...+
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~   49 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR   49 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            45666676 889999999999999999999999998876543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.58  E-value=0.19  Score=40.19  Aligned_cols=37  Identities=16%  Similarity=0.071  Sum_probs=31.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      +.|.|+|.|.+|..++..|  +|++|+++|.+++..+..
T Consensus         1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~   37 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKV   37 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHH
Confidence            4689999999999999987  577899999999887654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.027  Score=51.21  Aligned_cols=39  Identities=26%  Similarity=0.288  Sum_probs=32.9

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ||+|| |+ +.+|.++|..|++.|++|++.|++.+.++...
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   46 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQA   46 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            56655 55 78999999999999999999999988876554

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.52  E-value=0.063  Score=43.52  Aligned_cols=81  Identities=11%  Similarity=0.146  Sum_probs=55.7

Q ss_pred             cceEEEEeC----ChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          147 VKKVAILGG----GLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       147 ~~kV~vIG~----G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      .++|+|||+    |.+|..+.+.|...| .+|+.++...+.+.                             .+.+..++
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~-----------------------------G~~~y~sl   58 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQ-----------------------------GVKAYKSV   58 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEET-----------------------------TEECBSST
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccC-----------------------------CeEeecch
Confidence            468999997    888999999887766 58888887643321                             23345566


Q ss_pred             cccc-CCCEEEEeccCChHHHHHHHHHHHhhcCCCcee
Q 009395          222 ESFK-DVDMVIEAIIENVSLKQQIFADLEKYCPPHCIL  258 (535)
Q Consensus       222 ~~~~-~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii  258 (535)
                      +++. ..|+++.++|  .+...+++++..+.--+..++
T Consensus        59 ~dlp~~vDlvvi~vp--~~~~~~~~~~~~~~g~~~~vi   94 (129)
T d2csua1          59 KDIPDEIDLAIIVVP--KRFVKDTLIQCGEKGVKGVVI   94 (129)
T ss_dssp             TSCSSCCSEEEECSC--HHHHHHHHHHHHHHTCCEEEE
T ss_pred             hhcCCCCceEEEecC--hHHhHHHHHHHHHcCCCEEEE
Confidence            6664 5899999998  445567777766544344444

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.41  E-value=0.021  Score=51.12  Aligned_cols=33  Identities=21%  Similarity=0.217  Sum_probs=29.7

Q ss_pred             eEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHH
Q 009395          149 KVAILGGGLMGSGIATALILS--NYPVILKEVNEK  181 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~  181 (535)
                      ||+|||+|.-|.+-|..|+++  |++|+++|..+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            899999999999999988765  789999998764

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.39  E-value=0.13  Score=45.97  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=36.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|+|-|.|++|..+|..|...|..|+..|.++..++...
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~   79 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAV   79 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHH
Confidence            5899999999999999999999999999999998876543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.35  E-value=0.16  Score=46.76  Aligned_cols=38  Identities=18%  Similarity=0.258  Sum_probs=32.4

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      ++.|.|+ +-||.++|..|++.|++|++.|++++.++..
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~   45 (276)
T d1bdba_           7 AVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAEL   45 (276)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4555565 8999999999999999999999999887654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.33  E-value=0.046  Score=50.17  Aligned_cols=39  Identities=15%  Similarity=0.257  Sum_probs=30.7

Q ss_pred             eEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHH-HHHHHH
Q 009395          149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVNEK-FLEAGI  187 (535)
Q Consensus       149 kV~vI-G-~G~mG~~iA~~l~~~G~~V~l~d~~~~-~~~~~~  187 (535)
                      |++|| | ++-+|.++|..|++.|++|++.+++.+ .++...
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~   49 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVL   49 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence            55655 5 588999999999999999999999854 444433

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.027  Score=47.76  Aligned_cols=71  Identities=14%  Similarity=0.223  Sum_probs=51.1

Q ss_pred             ceEEEEeCCh-hhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGGL-MGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G~-mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|+|||-+. +|.+++..|.+.|..|++++.....+.                                     +.+++
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~-------------------------------------~~~~~   80 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN   80 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred             ceEEEEeccccccHHHHHHHHHhhccccccccccchhH-------------------------------------HHHhh
Confidence            5899999965 899999999999999999886433221                                     22577


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecC
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNT  262 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~t  262 (535)
                      ||+||.|+.-.--++       .+.+++++++++..
T Consensus        81 ADivI~a~G~p~~i~-------~~~vk~g~vvIDvG  109 (166)
T d1b0aa1          81 ADLLIVAVGKPGFIP-------GDWIKEGAIVIDVG  109 (166)
T ss_dssp             CSEEEECSCCTTCBC-------TTTSCTTCEEEECC
T ss_pred             hhHhhhhccCccccc-------ccccCCCcEEEecC
Confidence            999999985221121       23567888877654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.047  Score=46.50  Aligned_cols=73  Identities=16%  Similarity=0.284  Sum_probs=53.9

Q ss_pred             ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccccC
Q 009395          148 KKVAILGGG-LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESFKD  226 (535)
Q Consensus       148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  226 (535)
                      ++|+|||-+ ..|.++|..|.+.|..|++++.....+.                                     +.+++
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~   82 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK   82 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred             ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence            579999995 5799999999999999999986543221                                     23578


Q ss_pred             CCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          227 VDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       227 aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      +|+||.++...--++       ...+++++++++...+
T Consensus        83 aDivi~a~G~~~~i~-------~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          83 GDILVVATGQPEMVK-------GEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             CSEEEECCCCTTCBC-------GGGSCTTCEEEECCCB
T ss_pred             ccchhhccccccccc-------cccccCCCeEeccCcc
Confidence            999999986432222       3467889988876544

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.08  E-value=0.02  Score=47.69  Aligned_cols=92  Identities=18%  Similarity=0.206  Sum_probs=55.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCcc
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYE  222 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~  222 (535)
                      .||+|||+ |..|.-+.+.|.+.+|   ++..+.-+...-+            .+...          ...+.. ..+.+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk------------~i~~~----------~~~~~~~~~~~~   60 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ------------RMGFA----------ESSLRVGDVDSF   60 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC------------EEEET----------TEEEECEEGGGC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc------------ceeec----------cccchhccchhh
Confidence            57999998 9999999999986654   6666543322100            00000          001111 12234


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCc
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTID  266 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~  266 (535)
                      .+.++|+++.|+|...  -.++..++   ...++++++++|..-
T Consensus        61 ~~~~~d~vf~a~p~~~--s~~~~~~~---~~~g~~VID~Ss~fR   99 (144)
T d2hjsa1          61 DFSSVGLAFFAAAAEV--SRAHAERA---RAAGCSVIDLSGALE   99 (144)
T ss_dssp             CGGGCSEEEECSCHHH--HHHHHHHH---HHTTCEEEETTCTTT
T ss_pred             hhccceEEEecCCcch--hhhhcccc---ccCCceEEeechhhc
Confidence            5789999999998542  23444433   346788889888654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.07  E-value=0.082  Score=48.19  Aligned_cols=43  Identities=19%  Similarity=0.240  Sum_probs=36.1

Q ss_pred             ceEEEE-eC-ChhhHHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHH
Q 009395          148 KKVAIL-GG-GLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       148 ~kV~vI-G~-G~mG~~iA~~l~~---~G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      .||+|| |+ +-+|.++|..|++   +|+.|++.+|+++.++...+.+
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l   53 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL   53 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHH
Confidence            478888 55 6899999999986   7999999999999988776544

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.95  E-value=0.056  Score=45.11  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=29.3

Q ss_pred             eEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       149 kV~vI--G~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      .|.|+  |+|.||..+|..|++.|.+|+++++.+.-
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            45555  99999999999999999999999987543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.059  Score=49.68  Aligned_cols=43  Identities=21%  Similarity=0.217  Sum_probs=36.4

Q ss_pred             ceEEEE--eCChhhHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHH
Q 009395          148 KKVAIL--GGGLMGSGIATALILS-NYPVILKEVNEKFLEAGIGRV  190 (535)
Q Consensus       148 ~kV~vI--G~G~mG~~iA~~l~~~-G~~V~l~d~~~~~~~~~~~~i  190 (535)
                      ++|+||  |.+-+|.++|..|++. |..|++.+|++++++.+.+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l   48 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL   48 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence            579988  6689999999999975 899999999999988766443

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.80  E-value=0.066  Score=45.73  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=27.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCC-CcEE-EEeCCHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSN-YPVI-LKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G-~~V~-l~d~~~~~  182 (535)
                      .||+|.|.|.||+.+.+.+.... ++|+ +-|.++..
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~   39 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF   39 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChH
Confidence            48999999999999999887664 5655 45666543

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=92.67  E-value=0.14  Score=41.74  Aligned_cols=82  Identities=16%  Similarity=0.062  Sum_probs=56.7

Q ss_pred             ceEEEEeC----ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCccc
Q 009395          148 KKVAILGG----GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYES  223 (535)
Q Consensus       148 ~kV~vIG~----G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  223 (535)
                      ++|+|||+    +..|..+...|.+.||++..+..++..-+                           .....+..++.+
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~---------------------------i~g~~~~~~l~~   66 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---------------------------LFGEEAVASLLD   66 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---------------------------ETTEECBSSGGG
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce---------------------------eeceecccchhh
Confidence            57999998    78999999999999999999988653210                           012334455666


Q ss_pred             c-cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 009395          224 F-KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       224 ~-~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      + ...|+|+.++|  ++...+++++..+.- ...++.
T Consensus        67 i~~~iD~v~v~~p--~~~v~~~v~~~~~~g-~k~i~~  100 (136)
T d1iuka_          67 LKEPVDILDVFRP--PSALMDHLPEVLALR-PGLVWL  100 (136)
T ss_dssp             CCSCCSEEEECSC--HHHHTTTHHHHHHHC-CSCEEE
T ss_pred             ccCCCceEEEecc--HHHHHHHHHHHHhhC-CCeEEE
Confidence            6 45799999997  345556777765543 344443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=92.67  E-value=0.14  Score=46.74  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=29.6

Q ss_pred             ceEEEEeC-C--hhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          148 KKVAILGG-G--LMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~-G--~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      |++.|.|+ |  -||.++|..|++.|++|++.+++++.
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~   43 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL   43 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            45777786 5  49999999999999999999999643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.63  E-value=0.086  Score=47.64  Aligned_cols=41  Identities=17%  Similarity=0.081  Sum_probs=34.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      |++.|.|+ +-+|.++|..|++.|++|++.|++++.++...+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK   47 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            35566676 789999999999999999999999988766543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.043  Score=51.58  Aligned_cols=31  Identities=32%  Similarity=0.519  Sum_probs=29.3

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      |+|||+|.-|.+.|..|+++|++|+++|.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            8999999999999999999999999999754

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.051  Score=49.34  Aligned_cols=37  Identities=32%  Similarity=0.368  Sum_probs=31.9

Q ss_pred             eEEEE--eCChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395          149 KVAIL--GGGLMGSGIATALILSNYPVILKEVNEKFLEA  185 (535)
Q Consensus       149 kV~vI--G~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~  185 (535)
                      |+++|  |++.+|.+||+.|++.|++|++.|++++.++.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~   45 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE   45 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            56666  55999999999999999999999999887654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.54  E-value=0.27  Score=44.04  Aligned_cols=40  Identities=20%  Similarity=0.235  Sum_probs=33.7

Q ss_pred             ceEEEE-eC-ChhhHHHHHHHHhCCCc-------EEEEeCCHHHHHHHH
Q 009395          148 KKVAIL-GG-GLMGSGIATALILSNYP-------VILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vI-G~-G~mG~~iA~~l~~~G~~-------V~l~d~~~~~~~~~~  187 (535)
                      |+|++| |+ +-+|.++|..|+++|++       |++++++++.++...
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~   49 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKIS   49 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHH
Confidence            466655 66 77999999999999987       999999999887654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.49  E-value=0.049  Score=50.03  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=32.4

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      -+||.|+|+ |.+|+.++..|+++|++|++++|++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            468999997 999999999999999999999997544

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.34  E-value=0.045  Score=46.75  Aligned_cols=40  Identities=15%  Similarity=0.197  Sum_probs=35.0

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...+..+...|. .|+..|+++++.+.+.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~   70 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHH
Confidence            479999999999999999998885 8999999999887654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.20  E-value=0.23  Score=44.99  Aligned_cols=36  Identities=17%  Similarity=0.121  Sum_probs=31.0

Q ss_pred             ceEEEEeC-Ch--hhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          148 KKVAILGG-GL--MGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       148 ~kV~vIG~-G~--mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      |+|.|.|+ |.  ||.+||+.|++.|.+|++.+++.+++
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence            46777785 55  99999999999999999999987764

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.19  E-value=0.056  Score=48.60  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      |.|||+|..|...|..|+++|++|+++|.++.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            89999999999999999999999999998754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.11  E-value=0.16  Score=42.91  Aligned_cols=40  Identities=15%  Similarity=0.206  Sum_probs=33.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|. .|+..|.++++++.++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak   70 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK   70 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence            479999999999988888888886 6778889988876554

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.03  E-value=0.06  Score=49.75  Aligned_cols=35  Identities=31%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      -+||.|+|+ |.+|+.++..|+++|++|++.+|++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            467999996 99999999999999999999998754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.03  E-value=0.044  Score=46.30  Aligned_cols=33  Identities=36%  Similarity=0.506  Sum_probs=29.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC--cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY--PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~--~V~l~d~~~  180 (535)
                      +||.|||+|..|..+|..|.+.|.  +|+++++++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            589999999999999999999885  799999876

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.93  E-value=0.03  Score=50.00  Aligned_cols=34  Identities=24%  Similarity=0.177  Sum_probs=30.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-------cEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-------PVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-------~V~l~d~~~~  181 (535)
                      .||+|||+|.-|-+-|..|+++||       +|++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            489999999999999999999984       7999998764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.92  E-value=0.51  Score=42.90  Aligned_cols=38  Identities=32%  Similarity=0.342  Sum_probs=29.9

Q ss_pred             eEEEE-e-CChhhHHHHHHHHhCCCcEEEEeCC-HHHHHHH
Q 009395          149 KVAIL-G-GGLMGSGIATALILSNYPVILKEVN-EKFLEAG  186 (535)
Q Consensus       149 kV~vI-G-~G~mG~~iA~~l~~~G~~V~l~d~~-~~~~~~~  186 (535)
                      |+++| | ++.+|.+||..|++.|++|++.+++ ++.++..
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            55555 5 5999999999999999999999887 4444443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=91.92  E-value=0.052  Score=49.25  Aligned_cols=32  Identities=22%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~  179 (535)
                      .||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            489999999999999999999998 89999975

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.81  E-value=0.1  Score=46.85  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=32.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEA  185 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~  185 (535)
                      |++.|.|+ +-||.++|..|++.|++|++.|++++.++.
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR   43 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence            45667776 779999999999999999999999887653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.79  E-value=0.06  Score=50.41  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=31.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      --.|+|||+|.-|..+|..|.+.|++|+++|.+++
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            34699999999999999999999999999998754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=91.79  E-value=0.046  Score=51.70  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.6

Q ss_pred             cceEEEEeCChhhHHHHHHHH-----hCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALI-----LSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~-----~~G~~V~l~d~~~~  181 (535)
                      .--|.|||+|..|..+|..|+     ++|++|+++|+++.
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            346999999999999999996     58999999998754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.72  E-value=0.16  Score=42.59  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=35.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...+..+...|.+|++.+.++++++.+.
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k   68 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK   68 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhh
Confidence            4799999999999988888889999999999999877553

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=91.72  E-value=0.08  Score=48.07  Aligned_cols=36  Identities=28%  Similarity=0.276  Sum_probs=30.1

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE  184 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~  184 (535)
                      .+.|.|+ +-||.++|..|++.|++|++.|++++..+
T Consensus         7 ~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~   43 (248)
T d2d1ya1           7 GVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE   43 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            4445564 89999999999999999999999987643

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=91.68  E-value=0.49  Score=42.12  Aligned_cols=75  Identities=25%  Similarity=0.239  Sum_probs=45.0

Q ss_pred             CCcceEEEEeCChhhHHHHH----HHHh--CCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc
Q 009395          145 RRVKKVAILGGGLMGSGIAT----ALIL--SNYPVI-LKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG  217 (535)
Q Consensus       145 ~~~~kV~vIG~G~mG~~iA~----~l~~--~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~  217 (535)
                      .+..||+|||+|.+|+-++.    .+.+  .+++|+ ++|++++..+...+.          .+.          .....
T Consensus        14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~----------~~~----------~~~~~   73 (237)
T d2nvwa1          14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQ----------LQL----------KHATG   73 (237)
T ss_dssp             GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHH----------TTC----------TTCEE
T ss_pred             CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHh----------ccc----------cccee
Confidence            34468999999987654443    3433  356766 799999887654321          110          01112


Q ss_pred             ccCcccc---cCCCEEEEeccCChH
Q 009395          218 VLDYESF---KDVDMVIEAIIENVS  239 (535)
Q Consensus       218 ~~~~~~~---~~aDlVI~avpe~~~  239 (535)
                      .++++++   .+.|+|+.|+|....
T Consensus        74 ~~~~~~l~~~~~iD~V~i~tp~~~h   98 (237)
T d2nvwa1          74 FDSLESFAQYKDIDMIVVSVKVPEH   98 (237)
T ss_dssp             ESCHHHHHHCTTCSEEEECSCHHHH
T ss_pred             ecchhhcccccccceeeccCCCcch
Confidence            2345442   468999999986543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.55  E-value=0.14  Score=46.25  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=31.6

Q ss_pred             eEEEE--eCChhhHHHHHHHHhCCCcEEEEe-CCHHHHHHHHHH
Q 009395          149 KVAIL--GGGLMGSGIATALILSNYPVILKE-VNEKFLEAGIGR  189 (535)
Q Consensus       149 kV~vI--G~G~mG~~iA~~l~~~G~~V~l~d-~~~~~~~~~~~~  189 (535)
                      +|++|  |++-+|.++|..|++.|++|++.+ ++++.++...+.
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~   45 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQ   45 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH
Confidence            36666  458899999999999999999865 567766655443

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.52  E-value=0.052  Score=49.26  Aligned_cols=34  Identities=9%  Similarity=0.227  Sum_probs=28.4

Q ss_pred             ceEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAIL-GG-GLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      +||+|| |+ +-+|.++|..|++.|++|++.|++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            355555 65 78999999999999999999999764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.48  E-value=0.059  Score=51.28  Aligned_cols=37  Identities=22%  Similarity=0.208  Sum_probs=32.9

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      -++|.|+|+ |.+|+.++..|+++|++|++..|+++..
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~   40 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   40 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence            368999987 9999999999999999999999876653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.22  E-value=0.47  Score=42.68  Aligned_cols=37  Identities=27%  Similarity=0.278  Sum_probs=30.2

Q ss_pred             ceEEEEeCC---hhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009395          148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLE  184 (535)
Q Consensus       148 ~kV~vIG~G---~mG~~iA~~l~~~G~~V~l~d~~~~~~~  184 (535)
                      |++.|.|++   -+|.++|..|++.|++|++.+++++..+
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~   48 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRP   48 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence            456677864   4999999999999999999999866544

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.16  E-value=0.05  Score=43.16  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=28.7

Q ss_pred             ceEEEEeCChhhHHHHHHHH---hCCCcEEEEeCCHH
Q 009395          148 KKVAILGGGLMGSGIATALI---LSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~---~~G~~V~l~d~~~~  181 (535)
                      ++|+|||+|..|.-+|..+.   ..|.+|+++++++.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            68999999999999997654   34889999998754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.08  E-value=0.79  Score=38.32  Aligned_cols=40  Identities=30%  Similarity=0.264  Sum_probs=33.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|. .|++.|.++++++.++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~   74 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE   74 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh
Confidence            479999999999998888777775 7788999999877654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.99  E-value=0.36  Score=40.63  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=34.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...+..++..|- .|+..|+++++++.+.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~   70 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK   70 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence            479999999999999988888876 6999999999887654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.90  E-value=0.25  Score=44.46  Aligned_cols=34  Identities=21%  Similarity=0.399  Sum_probs=28.4

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      |+++| |+ +-||.++|..|++.|++|++.|++++.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            45555 65 789999999999999999999998653

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=90.80  E-value=0.29  Score=44.06  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=30.1

Q ss_pred             ceEEEEeCC---hhhHHHHHHHHhCCCcEEEEeCCHHHHHH
Q 009395          148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLEA  185 (535)
Q Consensus       148 ~kV~vIG~G---~mG~~iA~~l~~~G~~V~l~d~~~~~~~~  185 (535)
                      |+|.|.|++   -+|.++|..|++.|++|++.+++++..+.
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~   46 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR   46 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            456666764   37899999999999999999999664443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.70  E-value=0.18  Score=45.87  Aligned_cols=40  Identities=30%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEE-eCCHHHHHHHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILK-EVNEKFLEAGIG  188 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~-d~~~~~~~~~~~  188 (535)
                      |+++| |+ +-+|.++|..|++.|++|++. +++++.++...+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~   49 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVA   49 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHH
Confidence            45555 54 789999999999999999985 567766665543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.62  E-value=0.17  Score=44.32  Aligned_cols=38  Identities=13%  Similarity=0.068  Sum_probs=31.2

Q ss_pred             CcceEEEEeC-ChhhHHHHHHHHhCCCcEEE--EeCCHHHH
Q 009395          146 RVKKVAILGG-GLMGSGIATALILSNYPVIL--KEVNEKFL  183 (535)
Q Consensus       146 ~~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l--~d~~~~~~  183 (535)
                      .|++|.|.|+ |.+|+.++..|+++|++|.+  ..|+++..
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~   42 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK   42 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHH
Confidence            3779999995 99999999999999987554  55777654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.61  E-value=0.85  Score=37.91  Aligned_cols=40  Identities=23%  Similarity=0.265  Sum_probs=34.1

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+ |.+|...++.+...|. +|++.++++++++.+.
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~   70 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK   70 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence            57999995 9999998888888885 8999999999877654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.49  E-value=0.076  Score=48.38  Aligned_cols=33  Identities=33%  Similarity=0.457  Sum_probs=30.3

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      |||.|+|+ |.+|+.++..|..+|++|+..|+++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            57999998 9999999999999999999999863

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.43  E-value=0.058  Score=46.37  Aligned_cols=104  Identities=14%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhC-CCcEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc-c
Q 009395          147 VKKVAILGG-GLMGSGIATALILS-NYPVILKE-VNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY-E  222 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~-G~~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  222 (535)
                      |.||+|||+ |..|.-+.+.|.++ .+++.-.. .+.+...  -+.+.......  .+...        .......+. .
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~a--Gk~~~~~~~~~--~~~~~--------~~~~~~~~~~~   68 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDA--GKLISDLHPQL--KGIVD--------LPLQPMSDVRD   68 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTT--TCBHHHHCGGG--TTTCC--------CBEEEESCGGG
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccc--ccccccccccc--ccccc--------cccccchhhhh
Confidence            579999997 99999999999987 56665432 2211100  00000000000  00000        001111122 2


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      ...++|+|+.|+|...  -.++...+   ...++.++++++...+
T Consensus        69 ~~~~~dvvf~alp~~~--s~~~~~~~---~~~~~~vIDlSadfRl  108 (179)
T d2g17a1          69 FSADVDVVFLATAHEV--SHDLAPQF---LQAGCVVFDLSGAFRV  108 (179)
T ss_dssp             TCTTCCEEEECSCHHH--HHHHHHHH---HHTTCEEEECSSTTSS
T ss_pred             hhcccceeeccccchh--HHHHhhhh---hhcCceeecccccccc
Confidence            3578999999998542  23333333   3467778888876544

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.38  E-value=0.091  Score=47.47  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=31.8

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      ..|.|||+|..|...|..++++|++|+++|.++..
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            45999999999999999999999999999998643

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=90.34  E-value=0.097  Score=44.82  Aligned_cols=40  Identities=20%  Similarity=0.096  Sum_probs=34.3

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGR  189 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~  189 (535)
                      .+|..||+|. | ..+..|+++|++|+.+|+|++.++.+.++
T Consensus        22 ~rvLd~GCG~-G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          22 ARVLVPLCGK-S-QDMSWLSGQGYHVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             CEEEETTTCC-S-HHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred             CEEEEecCcC-C-HHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence            5899999998 3 46778899999999999999999887643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.21  E-value=0.11  Score=49.58  Aligned_cols=34  Identities=29%  Similarity=0.341  Sum_probs=30.3

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      -+||.|.|+ |.+|+.|+..|.++|++|+++|+..
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            467999986 9999999999999999999998753

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=89.90  E-value=0.12  Score=48.92  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=28.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      |||.|+|+ |.+|+.++..|++.|++|+++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            57999987 99999999999999999999986

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.86  E-value=0.1  Score=43.64  Aligned_cols=32  Identities=31%  Similarity=0.445  Sum_probs=27.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      .||+|||+|..|..+|..|. .+.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~-~~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLS-QTYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHH-cCCCEEEEeccc
Confidence            38999999999999999885 478999998753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.65  E-value=0.11  Score=44.88  Aligned_cols=33  Identities=18%  Similarity=0.132  Sum_probs=30.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      .++|+|||+|.-|..-|..+++.|.+|+++|..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            478999999999999999999999999999853

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.59  E-value=0.095  Score=43.79  Aligned_cols=91  Identities=19%  Similarity=0.180  Sum_probs=53.5

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHhhhccccc-ccCcc
Q 009395          149 KVAILGG-GLMGSGIATALILSNY---PVILKEVNEKFLEAGIGRVRANLQSRVKKGK-MTQEKFEKTISLLTG-VLDYE  222 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~~i~~-~~~~~  222 (535)
                      ||+|||+ |..|.-+.+.|.++.+   ++..+.-+ +.                 .|. +.     ........ .....
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-~s-----------------~G~~~~-----~~~~~~~~~~~~~~   59 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RS-----------------AGKSLK-----FKDQDITIEETTET   59 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-GG-----------------TTCEEE-----ETTEEEEEEECCTT
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-cc-----------------cccccc-----ccCCcccccccchh
Confidence            7999999 9999999999988865   33333322 11                 111 00     00001111 11223


Q ss_pred             cccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcH
Q 009395          223 SFKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDL  267 (535)
Q Consensus       223 ~~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~  267 (535)
                      ...++|+++.|.|....  .+...   +....++.|++++|....
T Consensus        60 ~~~~~d~~f~~~~~~~s--~~~~~---~~~~~~~~VIDlSsdfR~   99 (154)
T d2gz1a1          60 AFEGVDIALFSAGSSTS--AKYAP---YAVKAGVVVVDNTSYFRQ   99 (154)
T ss_dssp             TTTTCSEEEECSCHHHH--HHHHH---HHHHTTCEEEECSSTTTT
T ss_pred             hhhhhhhhhhccCccch--hhHHh---hhccccceehhcChhhhc
Confidence            46789999999985433  22222   234568889999987653

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.55  E-value=0.29  Score=44.15  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=28.7

Q ss_pred             EEEE-e-CChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          150 VAIL-G-GGLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       150 V~vI-G-~G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      |+|| | ++-+|.++|..|+++|++|++.+++.+..
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            5666 4 47799999999999999999999986543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.53  E-value=0.086  Score=44.77  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=30.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      -++|+|||+|..|..+|..|.+.|.+|+++.+.++
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            35899999999999999999999999887766543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.40  E-value=0.14  Score=44.01  Aligned_cols=33  Identities=27%  Similarity=0.220  Sum_probs=30.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      -++|+|||+|..|..-|..+++.|.+|+++++.
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            468999999999999999999999999999864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=89.36  E-value=0.14  Score=48.44  Aligned_cols=35  Identities=20%  Similarity=0.149  Sum_probs=32.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      +||.|.|+ |.+|+.++..|+++|++|+++|++...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            68999986 999999999999999999999997654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.16  E-value=0.13  Score=44.37  Aligned_cols=33  Identities=21%  Similarity=0.216  Sum_probs=28.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILS--NYPVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~  180 (535)
                      +||+|||+|..|..+|..|.+.  +.+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999876  45899998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.05  E-value=0.31  Score=42.13  Aligned_cols=40  Identities=25%  Similarity=0.278  Sum_probs=33.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...+..+...|. .|++.|.++++++.+.
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~   67 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK   67 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence            479999999999888877767776 7899999999987664

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.95  E-value=0.12  Score=44.18  Aligned_cols=97  Identities=12%  Similarity=0.123  Sum_probs=54.7

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCC-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCccc
Q 009395          147 VKKVAILGG-GLMGSGIATALILSN-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYES  223 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~  223 (535)
                      |.||+|+|+ |..|.-+.+.|.++- +++..+--+...-+    .+....    .          ........ ..+.+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~----~i~~~~----p----------~~~~~~~~~~~~~~~   62 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGK----KLEEIF----P----------STLENSILSEFDPEK   62 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTS----BHHHHC----G----------GGCCCCBCBCCCHHH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCC----cccccC----c----------hhhccccccccCHhH
Confidence            569999998 999999999998764 35555432211100    010000    0          00011111 122233


Q ss_pred             -ccCCCEEEEeccCChHHHHHHHHHHHhhcCCCceeeecCCcCcHH
Q 009395          224 -FKDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILASNTSTIDLN  268 (535)
Q Consensus       224 -~~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~s~tS~~~~~  268 (535)
                       ..++|+|+.|+|....  +++    .+.. .++.|+++++..-++
T Consensus        63 ~~~~~dvvf~a~p~~~s--~~~----~~~~-~~~~VIDlSadfRl~  101 (176)
T d1vkna1          63 VSKNCDVLFTALPAGAS--YDL----VREL-KGVKIIDLGADFRFD  101 (176)
T ss_dssp             HHHHCSEEEECCSTTHH--HHH----HTTC-CSCEEEESSSTTTCS
T ss_pred             hccccceEEEccccHHH--HHH----HHhh-ccceEEecCcccccc
Confidence             3579999999997643  222    2222 567888999876554

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.87  E-value=0.14  Score=42.28  Aligned_cols=31  Identities=23%  Similarity=0.393  Sum_probs=29.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      ++|.|||+|.+|..-+..|+++|.+|+++..
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            6899999999999999999999999999954

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=88.71  E-value=0.44  Score=40.70  Aligned_cols=31  Identities=23%  Similarity=0.438  Sum_probs=24.6

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhC-CCcEEEEe
Q 009395          147 VKKVAILGG-GLMGSGIATALILS-NYPVILKE  177 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~-G~~V~l~d  177 (535)
                      --||+|||+ |..|.-+.+.|.++ .+++....
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            357999998 99999999999876 34665553

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.50  E-value=0.17  Score=47.17  Aligned_cols=31  Identities=29%  Similarity=0.594  Sum_probs=29.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      +||.|.|+ |.+|+.++..|+++|++|+.+|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            68999987 99999999999999999999986

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.44  E-value=0.13  Score=43.70  Aligned_cols=40  Identities=15%  Similarity=0.201  Sum_probs=33.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|....+.+...|.+|+..+.++++.+.+.
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~   69 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL   69 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH
T ss_pred             CEEEEEeccccchhhhhhhhccccccccccccccccccccc
Confidence            47999996 99999998888888999999999988776543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.40  E-value=0.18  Score=47.55  Aligned_cols=31  Identities=29%  Similarity=0.525  Sum_probs=28.8

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      +||.|.|+ |.+|+.++..|+++|++|+++|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            68999987 99999999999999999999984

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=88.39  E-value=0.1  Score=49.44  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=28.3

Q ss_pred             CcceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009395          146 RVKKVAILGG-GLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       146 ~~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      +||||.|.|+ |.+|+.++..|.++|++|.++.+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            4789999986 99999999999999998665544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=88.39  E-value=0.26  Score=41.79  Aligned_cols=40  Identities=15%  Similarity=0.134  Sum_probs=35.4

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~  187 (535)
                      .+|.|+|+|.+|...++.+...|. +|+..|+++++++.+.
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~   69 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI   69 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence            479999999999999999888886 7999999999987664

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.36  E-value=0.069  Score=48.14  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=29.6

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFL  183 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~  183 (535)
                      |++.|.|+ +-||.++|..|++.|++|++.+++.+..
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            34555566 6799999999999999999999987653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.30  E-value=0.1  Score=46.59  Aligned_cols=34  Identities=26%  Similarity=0.447  Sum_probs=29.0

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      |++|| |+ +-+|.++|..|++.|++|++.|++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            45555 55 899999999999999999999998764

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=88.30  E-value=0.19  Score=47.08  Aligned_cols=104  Identities=14%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cCc-c
Q 009395          147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LDY-E  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~  222 (535)
                      .++|.|||+|.-  +++..+++.  ..+|+++|++++-++.+.+.+........+.            .+++.. .|. +
T Consensus        78 pk~VLiiG~G~G--~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d------------~rv~i~~~Da~~  143 (312)
T d1uira_          78 PKRVLIVGGGEG--ATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDD------------PRAVLVIDDARA  143 (312)
T ss_dssp             CCEEEEEECTTS--HHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC------------TTEEEEESCHHH
T ss_pred             cceEEEeCCCch--HHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCC------------CceEEEEchHHH
Confidence            468999999963  344555544  3489999999999887765432111111111            111111 111 1


Q ss_pred             c----ccCCCEEEEeccCC-----h---HHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          223 S----FKDVDMVIEAIIEN-----V---SLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       223 ~----~~~aDlVI~avpe~-----~---~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      -    -+.-|+||.-+++.     +   -.-++.++.+...++++-+++.++++
T Consensus       144 ~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s  197 (312)
T d1uira_         144 YLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (312)
T ss_dssp             HHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             HhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence            1    13579998765321     1   12367888999999999888877643

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.05  E-value=1.1  Score=39.60  Aligned_cols=93  Identities=16%  Similarity=0.188  Sum_probs=58.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccCcccc-
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLDYESF-  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-  224 (535)
                      .++|.=||+|+ | .++..|+++|.+|+++|.+++.++.+.+....       .+.           ++.. ..+.+.+ 
T Consensus        42 ~~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~-------~~~-----------~i~~~~~d~~~l~  101 (251)
T d1wzna1          42 VRRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKE-------RNL-----------KIEFLQGDVLEIA  101 (251)
T ss_dssp             CCEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TTC-----------CCEEEESCGGGCC
T ss_pred             CCEEEEeCCCC-C-ccchhhcccceEEEEEeecccccccccccccc-------ccc-----------cchheehhhhhcc
Confidence            35899999998 4 44567889999999999999998877654221       110           1111 1122221 


Q ss_pred             --cCCCEEEEec----cCChHHHHHHHHHHHhhcCCCceee
Q 009395          225 --KDVDMVIEAI----IENVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       225 --~~aDlVI~av----pe~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                        ...|+|+.+-    .-+..-.+.+++++..+++|+.+++
T Consensus       102 ~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         102 FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence              3468777531    1122334678999999998887554

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.05  E-value=0.13  Score=46.07  Aligned_cols=34  Identities=29%  Similarity=0.522  Sum_probs=30.8

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      .||.|.|+ +-+|.++|..|+++|++|++.|++++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            47888877 89999999999999999999999864

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.04  E-value=0.22  Score=43.43  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=29.1

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      -|.|||+|.-|...|..+++.|.+|++++.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            3899999999999999999999999999975

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=0.18  Score=49.40  Aligned_cols=33  Identities=24%  Similarity=0.502  Sum_probs=30.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCH
Q 009395          148 KKVAILGGGLMGSGIATALILSNY-PVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~  180 (535)
                      .||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            489999999999999999999998 899999863

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.97  E-value=0.17  Score=46.25  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=29.7

Q ss_pred             eEEEEeCChhhHHHHHHHHh-CCCcEEEEeCCHH
Q 009395          149 KVAILGGGLMGSGIATALIL-SNYPVILKEVNEK  181 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~-~G~~V~l~d~~~~  181 (535)
                      -|.|||+|.-|...|..|++ .|++|+++|..+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            49999999999999999987 5999999998753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.94  E-value=0.16  Score=45.05  Aligned_cols=39  Identities=13%  Similarity=-0.101  Sum_probs=33.6

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIG  188 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~  188 (535)
                      .+|..+|+|. | ..+..|++.|++|+.+|.+++.++.+.+
T Consensus        47 ~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          47 LRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             CEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            4799999998 4 5677889999999999999999987654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=87.84  E-value=0.68  Score=41.96  Aligned_cols=38  Identities=29%  Similarity=0.305  Sum_probs=29.8

Q ss_pred             EEEE-e-CChhhHHHHHHHHhCCCcEEEEeC-CHHHHHHHH
Q 009395          150 VAIL-G-GGLMGSGIATALILSNYPVILKEV-NEKFLEAGI  187 (535)
Q Consensus       150 V~vI-G-~G~mG~~iA~~l~~~G~~V~l~d~-~~~~~~~~~  187 (535)
                      |+|| | ++-+|.++|..|++.|++|++.++ +++.++...
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~   44 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS   44 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence            7777 4 478999999999999999998765 455555444

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.79  E-value=0.17  Score=46.79  Aligned_cols=32  Identities=31%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      -|.|||+|.-|.+.|..++++|.+|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            49999999999999999999999999999753

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.40  E-value=0.2  Score=48.17  Aligned_cols=30  Identities=33%  Similarity=0.569  Sum_probs=28.4

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEe
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKE  177 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d  177 (535)
                      +||.|.|+ |.+|+.++..|++.|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            58999987 9999999999999999999998

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=87.20  E-value=0.55  Score=42.31  Aligned_cols=37  Identities=16%  Similarity=0.136  Sum_probs=28.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLE  184 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~  184 (535)
                      |.|.|.|+ +-+|.++|..|++.|.+|++.+++.+..+
T Consensus         6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~   43 (254)
T d1sbya1           6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT   43 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH
Confidence            34566666 67999999999999999988877655443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.04  E-value=0.25  Score=45.86  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=30.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      ++|.|.|+ |.+|+.++..|+++|++|+.+|+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            57889987 9999999999999999999999864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.76  E-value=0.29  Score=41.27  Aligned_cols=31  Identities=23%  Similarity=0.170  Sum_probs=28.5

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      -|.|||+|..|...|..+++.|.+|++++.+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3899999999999999999999999999864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.68  E-value=0.84  Score=42.19  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=27.9

Q ss_pred             eEEEE-eC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          149 KVAIL-GG-GLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       149 kV~vI-G~-G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      |++|| |+ +-||.++|..|++.|++|++.|++.+
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            56666 55 78999999999999999999988654

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.33  E-value=0.14  Score=46.48  Aligned_cols=37  Identities=16%  Similarity=0.011  Sum_probs=30.5

Q ss_pred             EEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHH
Q 009395          150 VAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       150 V~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~  186 (535)
                      +.|-|+ +-+|.++|..|++.|++|++.|++.+.++..
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~   40 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL   40 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            345566 6699999999999999999999998876543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=86.31  E-value=0.67  Score=41.76  Aligned_cols=91  Identities=16%  Similarity=0.174  Sum_probs=58.1

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc---cc
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE---SF  224 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~~  224 (535)
                      ++|.=+|+|. | .++..+++.|.+|+.+|+|++.++.+++..+.       .| ++        .++. ..+.+   .-
T Consensus       122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~-------n~-~~--------~~~~-~~d~~~~~~~  182 (254)
T d2nxca1         122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKR-------NG-VR--------PRFL-EGSLEAALPF  182 (254)
T ss_dssp             CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH-------TT-CC--------CEEE-ESCHHHHGGG
T ss_pred             CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHH-------cC-Cc--------eeEE-eccccccccc
Confidence            4788999997 4 34556778899999999999999887654321       11 11        0111 11111   12


Q ss_pred             cCCCEEEEeccCChHHHHHHHHHHHhhcCCCceee
Q 009395          225 KDVDMVIEAIIENVSLKQQIFADLEKYCPPHCILA  259 (535)
Q Consensus       225 ~~aDlVI~avpe~~~~k~~v~~~l~~~~~~~~ii~  259 (535)
                      ...|+|+-.+.  .....++++++...++|+..++
T Consensus       183 ~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~li  215 (254)
T d2nxca1         183 GPFDLLVANLY--AELHAALAPRYREALVPGGRAL  215 (254)
T ss_dssp             CCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccchhhhccc--cccHHHHHHHHHHhcCCCcEEE
Confidence            46788887664  3455677788888888876543

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=86.24  E-value=0.28  Score=46.57  Aligned_cols=29  Identities=17%  Similarity=0.201  Sum_probs=27.9

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      |.|||+|.-|+.+|..|+++|++|+++++
T Consensus         5 VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           5 AVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             EEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            88999999999999999999999999986

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.13  E-value=0.23  Score=40.25  Aligned_cols=35  Identities=34%  Similarity=0.407  Sum_probs=29.5

Q ss_pred             ceEEEEeCChhhHHHHHHHHh----CCCcEEEEeCCHHH
Q 009395          148 KKVAILGGGLMGSGIATALIL----SNYPVILKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~----~G~~V~l~d~~~~~  182 (535)
                      ++|+|||+|..|.-+|..|++    .|.+|++++.++.-
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            479999999999999988853    58999999986643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.11  E-value=0.27  Score=43.33  Aligned_cols=32  Identities=31%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      -|.|||+|.-|.+-|..+++.|++|+++|.++
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            48999999999999999999999999999764

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.08  E-value=0.32  Score=42.55  Aligned_cols=32  Identities=25%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      -|+|||+|.-|..-|..+++.|.+|+++|..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            38999999999999999999999999999754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=85.89  E-value=0.27  Score=42.84  Aligned_cols=31  Identities=26%  Similarity=0.246  Sum_probs=29.1

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      |.|||+|.-|...|..+++.|.+|+++|.++
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            8999999999999999999999999999753

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=85.75  E-value=0.26  Score=46.02  Aligned_cols=32  Identities=31%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      -|.|||+|.-|.+.|..++++|++|++++..+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999999754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.60  E-value=0.44  Score=37.52  Aligned_cols=37  Identities=27%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             CcceEEEEeCCh-----------hhHHHHHHHHhCCCcEEEEeCCHHH
Q 009395          146 RVKKVAILGGGL-----------MGSGIATALILSNYPVILKEVNEKF  182 (535)
Q Consensus       146 ~~~kV~vIG~G~-----------mG~~iA~~l~~~G~~V~l~d~~~~~  182 (535)
                      ..+||.|||+|.           .+...++.|.+.|+++++++-||+.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            367999999984           5667788889999999999999885

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=85.59  E-value=0.28  Score=46.28  Aligned_cols=30  Identities=30%  Similarity=0.556  Sum_probs=28.5

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      -|.|||+|.-|..+|..|+++|++|.+++.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            489999999999999999999999999986

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.49  E-value=0.27  Score=46.20  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             cceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009395          147 VKKVAILGG-GLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      .++|.|.|+ |.+|+.++..|.+.|++|+++|+
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            467888877 99999999999999999999986

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.47  E-value=0.49  Score=43.64  Aligned_cols=106  Identities=13%  Similarity=0.171  Sum_probs=63.9

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-CC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcc--
Q 009395          147 VKKVAILGGGLMGSGIATALILS-NY-PVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYE--  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--  222 (535)
                      .++|.|||+|.-+  +++.+++. +. +|+++|++++.++.+++..... ....+..++          ++...+..+  
T Consensus        81 pk~VLiiGgG~G~--~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~-~~~~~~~r~----------~i~~~Da~~~l  147 (290)
T d1xj5a_          81 PKKVLVIGGGDGG--VLREVARHASIEQIDMCEIDKMVVDVSKQFFPDV-AIGYEDPRV----------NLVIGDGVAFL  147 (290)
T ss_dssp             CCEEEEETCSSSH--HHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH-HGGGGSTTE----------EEEESCHHHHH
T ss_pred             CcceEEecCCchH--HHHHHHhcccceeeEEecCCHHHHHHHHHhchhh-hccccCCCc----------EEEEccHHHHH
Confidence            4689999999744  45555655 44 7999999999998776543211 111111110          111111111  


Q ss_pred             -cc--cCCCEEEEeccCC-----hHHHHHHHHHHHhhcCCCceeeecCCcC
Q 009395          223 -SF--KDVDMVIEAIIEN-----VSLKQQIFADLEKYCPPHCILASNTSTI  265 (535)
Q Consensus       223 -~~--~~aDlVI~avpe~-----~~~k~~v~~~l~~~~~~~~ii~s~tS~~  265 (535)
                       ..  +.-|+||.-+++.     .-.-++.++.+...++++.+++.++.+.
T Consensus       148 ~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         148 KNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             HTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             hhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence             11  2479888655431     1234678889999999999998887653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.46  E-value=0.3  Score=45.81  Aligned_cols=33  Identities=33%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             ceEE-EEeC-ChhhHHHHHHHHhCCCcEEEEeCCH
Q 009395          148 KKVA-ILGG-GLMGSGIATALILSNYPVILKEVNE  180 (535)
Q Consensus       148 ~kV~-vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~  180 (535)
                      +||+ |.|+ |.+|+.++..|.++||+|+.+|+..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5894 6666 9999999999999999999999864

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.14  E-value=0.66  Score=42.81  Aligned_cols=105  Identities=17%  Similarity=0.208  Sum_probs=61.8

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCcccc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDYESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  224 (535)
                      .++|.|||+|.-  ++++.+++. + .+|+++|++++-++.+.+...... ......++          ++...+-.+-+
T Consensus        90 pk~VLiiGgG~G--~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~-~~~~d~rv----------~v~~~Da~~~l  156 (295)
T d1inla_          90 PKKVLIIGGGDG--GTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS-CGFDDPRA----------EIVIANGAEYV  156 (295)
T ss_dssp             CCEEEEEECTTC--HHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTE----------EEEESCHHHHG
T ss_pred             CceEEEecCCch--HHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhc-ccccCCCc----------EEEhhhHHHHH
Confidence            368999999874  445666655 3 479999999999887765432111 11111110          11111111111


Q ss_pred             ----cCCCEEEEeccCCh------HHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          225 ----KDVDMVIEAIIENV------SLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       225 ----~~aDlVI~avpe~~------~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                          +.-|+||.-.++..      -.-++.++.+...++++-+++.++.+
T Consensus       157 ~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         157 RKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             GGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             hcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence                34799997654321      12467888999999999998887765

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.03  E-value=0.34  Score=46.58  Aligned_cols=33  Identities=33%  Similarity=0.379  Sum_probs=29.9

Q ss_pred             eEEEEeCChhhHHHHHHHHh------CCCcEEEEeCCHH
Q 009395          149 KVAILGGGLMGSGIATALIL------SNYPVILKEVNEK  181 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~------~G~~V~l~d~~~~  181 (535)
                      -|.|||+|.-|.+.|..|++      +|++|.++|+..+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            49999999999999999997      8999999998643

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.64  E-value=0.4  Score=42.61  Aligned_cols=34  Identities=32%  Similarity=0.482  Sum_probs=30.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      |+|.|.|+ |.+|.++|..|+++|++|.+.|+++.
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            57888887 78999999999999999999998654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=84.42  E-value=1.3  Score=37.17  Aligned_cols=40  Identities=15%  Similarity=0.126  Sum_probs=33.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|.|+ |.+|...++.....|.+|+..++++++.+.+.
T Consensus        31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~   71 (182)
T d1v3va2          31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK   71 (182)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHH
Confidence            46888888 66888888888888999999999998876553

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=84.35  E-value=0.37  Score=45.74  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=28.1

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      -|.|||+|.-|..+|..|+++|++|+++++
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            488999999999999999999999999986

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=84.34  E-value=0.37  Score=44.65  Aligned_cols=30  Identities=30%  Similarity=0.536  Sum_probs=27.6

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      ||.|.|+ |.+|+.++..|+++|++|+++|.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            7888877 99999999999999999999984

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.28  E-value=0.4  Score=44.65  Aligned_cols=32  Identities=28%  Similarity=0.139  Sum_probs=27.9

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      +++.|.|+ |.+|+.++..|+++||+|+.+|+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            35566676 999999999999999999999984

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=84.10  E-value=0.13  Score=43.88  Aligned_cols=30  Identities=27%  Similarity=0.462  Sum_probs=26.1

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      +|+|||+|..|..+|..|.+.|.+|.+..+
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~   34 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVV   34 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEE
Confidence            599999999999999999999987666554

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.89  E-value=0.48  Score=41.07  Aligned_cols=31  Identities=19%  Similarity=0.144  Sum_probs=28.9

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      -|.|||+|..|...|..+++.|.+|++++..
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            3899999999999999999999999999875

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.89  E-value=4.4  Score=33.25  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=44.3

Q ss_pred             ceEEEEeCC-hhhHHHHHHHHhCCCcEEEEeC-----CHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccCc
Q 009395          148 KKVAILGGG-LMGSGIATALILSNYPVILKEV-----NEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLDY  221 (535)
Q Consensus       148 ~kV~vIG~G-~mG~~iA~~l~~~G~~V~l~d~-----~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~  221 (535)
                      .||++||-| ++..|++..+..-|.+|+++..     +++.++.+.+.                  .......+..+++.
T Consensus         5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~d~   66 (163)
T d1pvva2           5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQN------------------AAESGGSFELLHDP   66 (163)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHH------------------HHHHTCEEEEESCH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHh------------------hhcccceEEEecCH
Confidence            489999984 4678888888889999999865     33333332211                  00111244555565


Q ss_pred             -ccccCCCEEEEec
Q 009395          222 -ESFKDVDMVIEAI  234 (535)
Q Consensus       222 -~~~~~aDlVI~av  234 (535)
                       +++.++|+|..-.
T Consensus        67 ~ea~~~adviy~~~   80 (163)
T d1pvva2          67 VKAVKDADVIYTDV   80 (163)
T ss_dssp             HHHTTTCSEEEECC
T ss_pred             HHHhhhccEEeecc
Confidence             5689999998643

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=83.83  E-value=0.36  Score=42.10  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=29.3

Q ss_pred             eEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          149 KVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      .|.|||+|..|...|..+++.|.+|++++.+
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4999999999999999999999999999975

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.83  E-value=0.48  Score=41.12  Aligned_cols=30  Identities=20%  Similarity=0.182  Sum_probs=28.4

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      |.|||+|..|...|..+++.|.+|+++|..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            889999999999999999999999999864

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.73  E-value=0.65  Score=42.63  Aligned_cols=103  Identities=17%  Similarity=0.233  Sum_probs=61.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD-YE  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~-~~  222 (535)
                      .++|.|||+|.-  ++++.+++.  ..+|+++|++++-++.+++...... ...+..            +++.. .| .+
T Consensus        79 pk~vLiiGgG~G--~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~-~~~~d~------------rv~i~~~Da~~  143 (285)
T d2o07a1          79 PRKVLIIGGGDG--GVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA-IGYSSS------------KLTLHVGDGFE  143 (285)
T ss_dssp             CCEEEEEECTTS--HHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-GGGGCT------------TEEEEESCHHH
T ss_pred             cCeEEEeCCCch--HHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhc-cccCCC------------CceEEEccHHH
Confidence            368999999873  455666665  3589999999999987765432211 111111            22111 11 11


Q ss_pred             cc----cCCCEEEEeccCChH-----HHHHHHHHHHhhcCCCceeeecCCc
Q 009395          223 SF----KDVDMVIEAIIENVS-----LKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       223 ~~----~~aDlVI~avpe~~~-----~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      -+    +.-|+||.-++++..     ..++.++.+...++++.+++.++.+
T Consensus       144 ~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         144 FMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             HHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            11    346999976643221     3346678889999999988887654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=83.30  E-value=0.28  Score=45.32  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=28.8

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      +||.|.|+ |.+|+.++..|+++|+.|++.+..
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            58999987 999999999999999999888754

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=83.24  E-value=0.47  Score=44.33  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCC-cEEEEeCCHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNY-PVILKEVNEKF  182 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~-~V~l~d~~~~~  182 (535)
                      |||.|.|+ |.+|+.++..|++.|+ +|+++|+....
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~   37 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA   37 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc
Confidence            48999987 9999999999999995 89999986543

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.20  E-value=0.41  Score=42.84  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=33.7

Q ss_pred             cceEEEEeC-ChhhHHHHHHHH---hCCCcEEEEeCCHHHHHHH
Q 009395          147 VKKVAILGG-GLMGSGIATALI---LSNYPVILKEVNEKFLEAG  186 (535)
Q Consensus       147 ~~kV~vIG~-G~mG~~iA~~l~---~~G~~V~l~d~~~~~~~~~  186 (535)
                      ||+|.|.|+ .-+|.++|..|+   +.|+.|++.+|+++.++.+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~   45 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL   45 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            678988888 789999998886   5799999999998876543

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=82.90  E-value=1.2  Score=39.59  Aligned_cols=30  Identities=37%  Similarity=0.209  Sum_probs=27.2

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEe
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKE  177 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d  177 (535)
                      ++|+|=|.|++|...|+.|.+.|..|+.++
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            589999999999999999999999987654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.84  E-value=0.47  Score=41.67  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      |.|||+|.-|.+-|..+++.|.+|.++|..
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            899999999999999999999999999943

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.70  E-value=1.2  Score=40.47  Aligned_cols=106  Identities=16%  Similarity=0.270  Sum_probs=61.0

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHH---HHHHHHHHcCCCCHHHHHhhhcccccc-cCc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNY-PVILKEVNEKFLEAGIGRVR---ANLQSRVKKGKMTQEKFEKTISLLTGV-LDY  221 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~-~V~l~d~~~~~~~~~~~~i~---~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~  221 (535)
                      .++|.|||+|.-+.  +..+++.+. +|+++|+|++-++.+++...   ..++... ..         .-.+++.. .|.
T Consensus        73 p~~vLiiG~G~G~~--~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~-~~---------~d~rv~i~~~Da  140 (276)
T d1mjfa_          73 PKRVLVIGGGDGGT--VREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAML-NG---------KHEKAKLTIGDG  140 (276)
T ss_dssp             CCEEEEEECTTSHH--HHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHH-TT---------CCSSEEEEESCH
T ss_pred             CceEEEecCCchHH--HHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhh-cc---------CCCCceEEEChH
Confidence            35899999997443  344455543 79999999999887654210   0000000 00         00122211 111


Q ss_pred             ----ccccCCCEEEEeccCChH-----HHHHHHHHHHhhcCCCceeeecCCc
Q 009395          222 ----ESFKDVDMVIEAIIENVS-----LKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       222 ----~~~~~aDlVI~avpe~~~-----~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                          ..-+.-|+||.-+++...     ..++.++.+.+.++++-++++++.+
T Consensus       141 ~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         141 FEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             HHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence                112567999875543221     1257788999999999988877644

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=82.43  E-value=3.2  Score=34.38  Aligned_cols=40  Identities=8%  Similarity=-0.060  Sum_probs=33.0

Q ss_pred             ceEEEEeC-ChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Q 009395          148 KKVAILGG-GLMGSGIATALILSNYPVILKEVNEKFLEAGI  187 (535)
Q Consensus       148 ~kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~  187 (535)
                      ++|.|+|+ |.+|....+.+...|.+|+..++++++.+.+.
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~   70 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL   70 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred             CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH
Confidence            47999966 55888888888888999999999999876553

>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=82.22  E-value=1.4  Score=35.72  Aligned_cols=76  Identities=14%  Similarity=0.078  Sum_probs=47.6

Q ss_pred             cceEEEE-eC--C---hhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccccC
Q 009395          147 VKKVAIL-GG--G---LMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGVLD  220 (535)
Q Consensus       147 ~~kV~vI-G~--G---~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  220 (535)
                      -+||.|| +.  |   .|...|+..+...|++|.++|.+....+..                                  
T Consensus         2 ~~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~~----------------------------------   47 (152)
T d1e5da1           2 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQI----------------------------------   47 (152)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHH----------------------------------
T ss_pred             CCeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhhh----------------------------------
Confidence            3577777 32  3   467778888889999999999864322211                                  


Q ss_pred             cccccCCCEEEEeccCC----hHHHHHHHHHHHhhcCCCc
Q 009395          221 YESFKDVDMVIEAIIEN----VSLKQQIFADLEKYCPPHC  256 (535)
Q Consensus       221 ~~~~~~aDlVI~avpe~----~~~k~~v~~~l~~~~~~~~  256 (535)
                      ...+.++|+||...|..    +...+.++..+...-.++.
T Consensus        48 ~~~l~~~d~vi~Gspt~~~~~~~~~~~~l~~~~~~~~~~k   87 (152)
T d1e5da1          48 MSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKGLRPQNK   87 (152)
T ss_dssp             HHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHTCCCSC
T ss_pred             ccchhhCCEEEEeccccCCccCchhHHHHHHhhccCCCCC
Confidence            12357799999988752    2234566666554333333

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=81.65  E-value=0.5  Score=43.17  Aligned_cols=103  Identities=17%  Similarity=0.281  Sum_probs=62.1

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhcccccc-cC-cc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTGV-LD-YE  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~-~~  222 (535)
                      .++|.|||+|.-  ++++.+++. + -+|+++|++++-++.+.+.....      .+....       .++... .| .+
T Consensus        76 p~~vLiiGgG~G--~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~------~~~~~d-------~r~~i~~~D~~~  140 (274)
T d1iy9a_          76 PEHVLVVGGGDG--GVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI------AGKLDD-------PRVDVQVDDGFM  140 (274)
T ss_dssp             CCEEEEESCTTC--HHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHH------HTTTTS-------TTEEEEESCSHH
T ss_pred             cceEEecCCCCc--HHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhh------cccccC-------CCeEEEechHHH
Confidence            358999999873  344555554 4 48999999999988766432211      111110       122111 11 11


Q ss_pred             cc----cCCCEEEEeccCCh-----HHHHHHHHHHHhhcCCCceeeecCCc
Q 009395          223 SF----KDVDMVIEAIIENV-----SLKQQIFADLEKYCPPHCILASNTST  264 (535)
Q Consensus       223 ~~----~~aDlVI~avpe~~-----~~k~~v~~~l~~~~~~~~ii~s~tS~  264 (535)
                      -+    +.-|+||.-.++..     -.-++.++.+...++++.+++.++.+
T Consensus       141 ~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         141 HIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             HHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             HHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            11    34799986654321     12468888999999999999887654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.88  E-value=0.77  Score=41.94  Aligned_cols=37  Identities=16%  Similarity=0.118  Sum_probs=31.1

Q ss_pred             ceEEEEeCC---hhhHHHHHHHHhCCCcEEEEeCCHHHHH
Q 009395          148 KKVAILGGG---LMGSGIATALILSNYPVILKEVNEKFLE  184 (535)
Q Consensus       148 ~kV~vIG~G---~mG~~iA~~l~~~G~~V~l~d~~~~~~~  184 (535)
                      |++.|.|++   -+|.+||..|++.|.+|++.+++++...
T Consensus         9 K~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~   48 (297)
T d1d7oa_           9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNI   48 (297)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhh
Confidence            567777985   5999999999999999999999876543

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=80.73  E-value=0.62  Score=44.19  Aligned_cols=30  Identities=30%  Similarity=0.240  Sum_probs=28.1

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      +.|||+|.-|+-+|..|+++|++|.++++-
T Consensus         5 ~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           5 YIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            789999999999999999999999999864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.45  E-value=0.69  Score=42.97  Aligned_cols=104  Identities=19%  Similarity=0.237  Sum_probs=58.7

Q ss_pred             cceEEEEeCChhhHHHHHHHHhC-C-CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc--ccCcc
Q 009395          147 VKKVAILGGGLMGSGIATALILS-N-YPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG--VLDYE  222 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~-G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~--~~~~~  222 (535)
                      .++|.|||+|.-  ++++.+++. + -+|+++|++++.++.+.+..... ......            .+++.  .+-.+
T Consensus       107 pk~VLIiGgG~G--~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~-~~~~~d------------prv~i~i~Da~~  171 (312)
T d2b2ca1         107 PKRVLIIGGGDG--GILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGM-SCGFSH------------PKLDLFCGDGFE  171 (312)
T ss_dssp             CCEEEEESCTTS--HHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTT-SGGGGC------------TTEEEECSCHHH
T ss_pred             CCeEEEeCCCch--HHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhh-ccccCC------------CCeEEEEchHHH
Confidence            468999999973  445556664 3 47999999999988765432100 000000            11111  11111


Q ss_pred             ----cccCCCEEEEeccCC-----hHHHHHHHHHHHhhcCCCceeeecCCcC
Q 009395          223 ----SFKDVDMVIEAIIEN-----VSLKQQIFADLEKYCPPHCILASNTSTI  265 (535)
Q Consensus       223 ----~~~~aDlVI~avpe~-----~~~k~~v~~~l~~~~~~~~ii~s~tS~~  265 (535)
                          .-+.-|+||.-+++.     .-.-++.++.+...++++-++++++.+.
T Consensus       172 ~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         172 FLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             HHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             HHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence                123479999655432     1244677888999999999998887543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.32  E-value=0.46  Score=44.10  Aligned_cols=32  Identities=25%  Similarity=0.299  Sum_probs=29.7

Q ss_pred             ceEEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          148 KKVAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       148 ~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      .-|.|||+|.-|.+.|..++++|.+|++++..
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            45999999999999999999999999999975

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.27  E-value=0.51  Score=43.69  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             eEEEEeCChhhHHHHHHHHh--CCCcEEEEeCCHH
Q 009395          149 KVAILGGGLMGSGIATALIL--SNYPVILKEVNEK  181 (535)
Q Consensus       149 kV~vIG~G~mG~~iA~~l~~--~G~~V~l~d~~~~  181 (535)
                      .|+|||+|.-|.+.|..|++  .|++|+++|.++.
T Consensus        52 ~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            59999999999999999985  4999999998643

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.19  E-value=0.67  Score=43.42  Aligned_cols=30  Identities=30%  Similarity=0.553  Sum_probs=26.7

Q ss_pred             eEEEEeC-ChhhHHHHHHHHhCCCcEEEEeC
Q 009395          149 KVAILGG-GLMGSGIATALILSNYPVILKEV  178 (535)
Q Consensus       149 kV~vIG~-G~mG~~iA~~l~~~G~~V~l~d~  178 (535)
                      .|.|.|+ |.+|+.++..|+++|++|+++|+
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            4667766 99999999999999999999985

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.11  E-value=2.2  Score=36.12  Aligned_cols=95  Identities=13%  Similarity=0.143  Sum_probs=57.2

Q ss_pred             cceEEEEeCChhhHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHhhhccccc-ccC-cccc
Q 009395          147 VKKVAILGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVRANLQSRVKKGKMTQEKFEKTISLLTG-VLD-YESF  224 (535)
Q Consensus       147 ~~kV~vIG~G~mG~~iA~~l~~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~-~~~~  224 (535)
                      -++|.=||+|.=  .++..+++.+.+|+++|.|+..++.+.+.++.       .+ ++.       .++.. ..| .+.+
T Consensus        53 ~~~VLDiGcG~G--~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~-------~~-l~~-------~~i~~~~~d~~~~~  115 (194)
T d1dusa_          53 DDDILDLGCGYG--VIGIALADEVKSTTMADINRRAIKLAKENIKL-------NN-LDN-------YDIRVVHSDLYENV  115 (194)
T ss_dssp             TCEEEEETCTTS--HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-------TT-CTT-------SCEEEEECSTTTTC
T ss_pred             CCeEEEEeecCC--hhHHHHHhhccccceeeeccccchhHHHHHHH-------hC-Ccc-------ceEEEEEcchhhhh
Confidence            357999999874  33455677888999999999998877644321       11 110       01221 112 2222


Q ss_pred             --cCCCEEEEeccC--ChHHHHHHHHHHHhhcCCCcee
Q 009395          225 --KDVDMVIEAIIE--NVSLKQQIFADLEKYCPPHCIL  258 (535)
Q Consensus       225 --~~aDlVI~avpe--~~~~k~~v~~~l~~~~~~~~ii  258 (535)
                        ...|+|+...|-  ..+....+++++...++++-++
T Consensus       116 ~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l  153 (194)
T d1dusa_         116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEI  153 (194)
T ss_dssp             TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEE
Confidence              357988865442  2334456778888888877543

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=80.04  E-value=0.65  Score=43.85  Aligned_cols=33  Identities=36%  Similarity=0.334  Sum_probs=26.9

Q ss_pred             eEE-EEe-CChhhHHHHHHHHhCCCcEEEEeCCHH
Q 009395          149 KVA-ILG-GGLMGSGIATALILSNYPVILKEVNEK  181 (535)
Q Consensus       149 kV~-vIG-~G~mG~~iA~~l~~~G~~V~l~d~~~~  181 (535)
                      ||+ |.| +|.+|+.++..|+++|++|+++|+...
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~   36 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            455 777 599999999999999999999999654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.01  E-value=0.64  Score=40.20  Aligned_cols=30  Identities=23%  Similarity=0.149  Sum_probs=28.4

Q ss_pred             EEEEeCChhhHHHHHHHHhCCCcEEEEeCC
Q 009395          150 VAILGGGLMGSGIATALILSNYPVILKEVN  179 (535)
Q Consensus       150 V~vIG~G~mG~~iA~~l~~~G~~V~l~d~~  179 (535)
                      |.|||+|.-|..-|..+++.|.+|.++|..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            899999999999999999999999999964