Citrus Sinensis ID: 009399

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
MAFPSSYILSLLLILLLSSASRTNSDSVEDSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPLPLQQG
ccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHccccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHcccccccccEEccccccccccccccccHHHHHccccccEEEEEEEEEccccEEEccccccccEEEEEccccccEEEEEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccEEEEEEEEEEEccHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHEHHHHHHHcccEEEEEcccccccccEEEEcccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHHHHHHHHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccc
MAFPSSYILSLLLILLLSsasrtnsdsveDSFIHclnsnsdlsvpfstfcdqtnssfGSILQSSAQNLryltpsmpkpefiftplyesHVQAAVICSKQLGIHLRvrsgghdyeglsyvseietPFIIVDLARLRAISVdiesnsawvQTGATIGEVYYRIAEkskihgfpaglctslgvgghitggaYGSMMrkyglgadnvldarivdangkildreamGEDLFWAirggggasfGIILSWKiklvpvpetVTVFTVTKTLEQGATKILYRWQQVADKLDEDLFIRVIIQAAeiperkgqrtisTSYNALFLGGVDRLLQVMQESfpelgltqkdcietswIKSVLYIagypsntppevllqgKSTFKNYFKAksdfvrepipetALEGLWKRfleeegplsiwnpyggmmskiaesaipfphrngtlfkIQYVTNWQDGDKNMAKHMEWIRRLYNYMapyvsmlpraayvnyrdldlgmnnksntSFIQAtawgsryfkdNFMRLVRVKtkvdpdnffrheqsipplplqqg
MAFPSSYILSLLLILLLSSASRTNSDSVEDSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVdiesnsawvqtGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYRWQQVADKLDEDLFIRVIIQaaeiperkgqrtiSTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKvdpdnffrheqsipplplqqg
MAFPssyilslllilllssasRTNSDSVEDSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLvpvpetvtvftvtktLEQGATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPLPLQQG
*****SYILSLLLILLLSS**********DSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFF**************
***PSSYILSLLLILLLSSASRTNSDSVEDSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSI*PL*****
MAFPSSYILSLLLILLLSSASRTNSDSVEDSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPLPLQQG
**FPSSYILSLLLILLLSSASRTNSDSVEDSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPL*****
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAFPSSYILSLLLILLLSSASRTNSDSVEDSFIHCLNSNSDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLEQGATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPLPLQQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query535 2.2.26 [Sep-21-2011]
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.977 0.959 0.454 1e-137
A6P6W1545 Cannabidiolic acid syntha N/A no 0.971 0.954 0.456 1e-136
A6P6W0545 Cannabidiolic acid syntha N/A no 0.971 0.954 0.456 1e-135
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.975 0.957 0.457 1e-135
A6P6V9544 Cannabidiolic acid syntha N/A no 0.928 0.913 0.454 1e-133
Q9SVG4570 Reticuline oxidase-like p no no 0.940 0.882 0.478 1e-128
P93479535 Reticuline oxidase OS=Pap N/A no 0.945 0.945 0.419 1e-105
P30986538 Reticuline oxidase OS=Esc N/A no 0.891 0.886 0.418 1e-101
Q796Y5451 Uncharacterized FAD-linke yes no 0.723 0.858 0.271 2e-24
O06997447 Uncharacterized FAD-linke no no 0.719 0.861 0.293 3e-24
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function desciption
 Score =  488 bits (1256), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/539 (45%), Positives = 365/539 (67%), Gaps = 16/539 (2%)

Query: 5   SSYILSLLLILLLSSASRTNSDSVEDSFIHCLNSN--SDLSVPFSTFCDQTNSSFGSILQ 62
           S + +  ++   LS   + +  +  ++F+ C + +  ++++ P   +  Q +  + SIL 
Sbjct: 7   SFWFVCKIIFFFLSFHIQISIANPRENFLKCFSKHIPNNVANPKLVYT-QHDQLYMSILN 65

Query: 63  SSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEI 122
           S+ QNLR+++ + PKP  I TP   SH+QA ++CSK++G+ +R RSGGHD EG+SY+S++
Sbjct: 66  STIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV 125

Query: 123 ETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGG 182
             PF++VDL  + +I +D+ S +AWV+ GAT+GEVYY I EK++   FP G C ++GVGG
Sbjct: 126 --PFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGG 183

Query: 183 HITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILS 242
           H +GG YG++MR YGL ADN++DA +V+ +GK+LDR++MGEDLFWAIRGGGG +FGII +
Sbjct: 184 HFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAA 243

Query: 243 WKIKLVPVPETVTVFTVTKTLE-QGATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKG 301
           WKIKLV VP   T+F+V K +E  G  K+  +WQ +A K D+DL +        I +  G
Sbjct: 244 WKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHG 303

Query: 302 QR--TISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGY----PS 355
           +   T+   ++++F GGVD L+ +M +SFPELG+ + DC E SWI + ++ +G      +
Sbjct: 304 KNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTA 363

Query: 356 NTPPEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEE--GPLSIWNPYGGMM 413
           N   E+LL   +  K  F  K D+V++PIPETA+  + ++  EE+    + +  PYGG+M
Sbjct: 364 NFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIM 423

Query: 414 SKIAESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYV 473
            +I+ESAIPFPHR G ++++ Y  +W+  + N  KH+ W+R +YN+  PYVS  PR AY+
Sbjct: 424 EEISESAIPFPHRAGIMYELWYTASWEKQEDN-EKHINWVRSVYNFTTPYVSQNPRLAYL 482

Query: 474 NYRDLDLG-MNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPLP 531
           NYRDLDLG  N+ S  ++ QA  WG +YF  NF RLV+VKTKVDP+NFFR+EQSIPPLP
Sbjct: 483 NYRDLDLGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 541
Catalyzes the oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing delta(9)-tetrahydrocannabinolate (THCA), the major cannabioid in drug-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 7
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
356533127543 PREDICTED: reticuline oxidase-like prote 0.986 0.972 0.771 0.0
356533129540 PREDICTED: reticuline oxidase-like prote 0.958 0.95 0.786 0.0
255564335548 Reticuline oxidase precursor, putative [ 0.936 0.914 0.815 0.0
356555926543 PREDICTED: reticuline oxidase-like prote 0.986 0.972 0.761 0.0
225444135539 PREDICTED: reticuline oxidase-like prote 0.985 0.977 0.761 0.0
147846530539 hypothetical protein VITISV_003756 [Viti 0.979 0.972 0.763 0.0
449433537549 PREDICTED: reticuline oxidase-like prote 0.985 0.959 0.769 0.0
449506753549 PREDICTED: reticuline oxidase-like prote 0.985 0.959 0.767 0.0
255564331548 Reticuline oxidase precursor, putative [ 0.949 0.927 0.805 0.0
356512143531 PREDICTED: reticuline oxidase-like prote 0.973 0.981 0.762 0.0
>gi|356533127|ref|XP_003535119.1| PREDICTED: reticuline oxidase-like protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/533 (77%), Positives = 471/533 (88%), Gaps = 5/533 (0%)

Query: 1   MAFPSSYILSLLLILLLSSASRTNSDSVEDSFIHCLNSNSDLSVPF-STFCDQTNSSFGS 59
           M  P S++++L+L+L +S A+   S S+E++F+ CL+  SD + PF ++     N+SF  
Sbjct: 1   MVSPISHLVTLILLLSVSLAA---SASLEENFVQCLSFYSDKAAPFYASIYTPQNASFNK 57

Query: 60  ILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYV 119
           IL+SSAQNLRYL PS PKPE IFTPL +SHVQ AV CSK+LGIHLR+RSGGHDYEGLSYV
Sbjct: 58  ILESSAQNLRYLVPSAPKPELIFTPLTDSHVQVAVTCSKKLGIHLRIRSGGHDYEGLSYV 117

Query: 120 SEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLG 179
           SE+E+PFIIVDL++LRAI VDIE N+AW+Q GATIGEVYYRI EKS +HGFPAGLCTSLG
Sbjct: 118 SEVESPFIIVDLSKLRAIDVDIEDNTAWIQAGATIGEVYYRIYEKSSVHGFPAGLCTSLG 177

Query: 180 VGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGI 239
           VGGHITGGAYGSMMRKYGLGADNV+DARIVDANG+ILDREAMGEDLFWAIRGGGGASFGI
Sbjct: 178 VGGHITGGAYGSMMRKYGLGADNVVDARIVDANGQILDREAMGEDLFWAIRGGGGASFGI 237

Query: 240 ILSWKIKLVPVPETVTVFTVTKTLEQGATKILYRWQQVADKLDEDLFIRVIIQAAEIPER 299
           +L WKIKLVPVPETVTVFTVT++LEQ ATKIL+RWQ+VA  +DEDLFIRVIIQ A +   
Sbjct: 238 LLWWKIKLVPVPETVTVFTVTRSLEQDATKILHRWQEVAPYIDEDLFIRVIIQPATV-GN 296

Query: 300 KGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPP 359
           K +RTI+TSYNA FLGG DRLLQVM+ESFPELGLT+KDC+ETSWIKSVLYIAGYP++TPP
Sbjct: 297 KTERTITTSYNAQFLGGADRLLQVMKESFPELGLTKKDCLETSWIKSVLYIAGYPNDTPP 356

Query: 360 EVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAES 419
           EVLLQGKSTFKNYFKAKSDFVR+PIPET LEGLW+R LEE+ PL IWNPYGGMMSK +ES
Sbjct: 357 EVLLQGKSTFKNYFKAKSDFVRDPIPETGLEGLWQRLLEEDSPLMIWNPYGGMMSKFSES 416

Query: 420 AIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLD 479
            IPFPHRNGTL+KIQY+T WQDGDKN +KH +WIR+LYNYM PYVS  PR AYVNYRDLD
Sbjct: 417 DIPFPHRNGTLYKIQYLTLWQDGDKNASKHEDWIRKLYNYMTPYVSKFPREAYVNYRDLD 476

Query: 480 LGMNNKSNTSFIQATAWGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPLPL 532
           LGMN K++TS+IQATAWG+ YFKDNF RLV++KTKVDPDN FRHEQSIPPLP+
Sbjct: 477 LGMNKKNSTSYIQATAWGNMYFKDNFNRLVKIKTKVDPDNVFRHEQSIPPLPV 529

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356533129|ref|XP_003535120.1| PREDICTED: reticuline oxidase-like protein-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|255564335|ref|XP_002523164.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537571|gb|EEF39195.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356555926|ref|XP_003546280.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|225444135|ref|XP_002268361.1| PREDICTED: reticuline oxidase-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|147846530|emb|CAN81654.1| hypothetical protein VITISV_003756 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449433537|ref|XP_004134554.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449506753|ref|XP_004162839.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255564331|ref|XP_002523162.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537569|gb|EEF39193.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356512143|ref|XP_003524780.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.928 0.930 0.697 7.5e-192
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.936 0.941 0.667 3e-188
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.936 0.932 0.639 2.7e-180
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.945 0.935 0.6 1.2e-170
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.947 0.935 0.608 1.2e-170
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.930 0.936 0.512 1.1e-137
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.945 0.960 0.492 2e-136
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.934 0.943 0.496 2.5e-136
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.915 0.921 0.489 2.2e-130
TAIR|locus:2197935530 AT1G26390 [Arabidopsis thalian 0.921 0.930 0.481 1.1e-128
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1859 (659.5 bits), Expect = 7.5e-192, P = 7.5e-192
 Identities = 353/506 (69%), Positives = 409/506 (80%)

Query:    27 SVEDSFIHCLNSNSDLSVPF-STFC--DQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFT 83
             +++  F+ CL  NSD S P  S+F   D   SSF   L++SAQNLRYL PS PKPEFIF 
Sbjct:    30 TIQQDFVMCLVDNSDASFPMDSSFFTHDLNASSFKLALETSAQNLRYLMPSNPKPEFIFE 89

Query:    84 PLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIES 143
             PLYE+HVQAAV+C+K+L +HLR+RSGGHDYEGLSYVSE+ET F+IVDL++LR ISVDIES
Sbjct:    90 PLYETHVQAAVLCAKKLKLHLRLRSGGHDYEGLSYVSEMETAFVIVDLSKLRQISVDIES 149

Query:   144 NSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNV 203
             NSAWV  GA+IGEVYYRI EKSKIHGFPAGLCTSLG+GGHI GGAYGSMMRK+GLGADNV
Sbjct:   150 NSAWVHAGASIGEVYYRIQEKSKIHGFPAGLCTSLGIGGHIIGGAYGSMMRKFGLGADNV 209

Query:   204 LDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXL 263
             LDARIVDA+GKIL+R AMGED+FWAIRGGGG SFG+IL+WKIKL               L
Sbjct:   210 LDARIVDADGKILNRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPVPEIVTVFTVTRTL 269

Query:   264 EQGATKILYRWQQVADKLDEDLFIRVIIQ-AAEIPERKGQRTISTSYNALFLGGVDRLLQ 322
             EQ  TK+LY+WQQVADKLDEDLFIRVIIQ  ++ P+ K +RTISTSY   FLG  +RLLQ
Sbjct:   270 EQDGTKLLYKWQQVADKLDEDLFIRVIIQPTSKTPKSK-ERTISTSYQGQFLGDANRLLQ 328

Query:   323 VMQESFPELGLTQKDCIETSWIKSVLYIAGYPSNTPPEVLLQGKSTFKNYFKAKSDFVRE 382
             VMQ SFP+LGLT+KDC+ETSWIKSV+YIAG+PS  P E LL GKS FKNYFKAKSD+V E
Sbjct:   329 VMQRSFPQLGLTKKDCLETSWIKSVMYIAGFPSTAPSEALLDGKSLFKNYFKAKSDYVEE 388

Query:   383 PIPETALEGLWKRFLEEEGPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTNWQDG 442
             PIP   LEGLW++ LEE+ PL+IWNPYGGMM+KI E+  PFPHR+GTLFKIQ++T WQDG
Sbjct:   389 PIPVEGLEGLWEKLLEEDSPLTIWNPYGGMMAKIPETETPFPHRSGTLFKIQWLTLWQDG 448

Query:   443 DKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNNKSNTSFIQATAWGSRYFK 502
               + AKHM W+R +Y+YM  YVS  PR+AYVNYRDLDLGMN K +     A  WG+RYFK
Sbjct:   449 KTSEAKHMGWMREMYSYMEQYVSKSPRSAYVNYRDLDLGMNGKGS----DAREWGNRYFK 504

Query:   503 DNFMRLVRVKTKVDPDNFFRHEQSIP 528
              NF RLV +K K DP+NFFRHEQSIP
Sbjct:   505 GNFERLVEIKAKFDPENFFRHEQSIP 530
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197935 AT1G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029820001
SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (539 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 4e-28
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 1e-27
pfam0803145 pfam08031, BBE, Berberine and berberine like 1e-20
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 1e-06
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 1e-06
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 0.002
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  108 bits (273), Expect = 4e-28
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 78  PEFIFTPLYESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI 137
           P  +  P  E  V A V  + + G+ + VR GG    G + +    T  +++DL+RL  I
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVL----TGGVVLDLSRLNGI 56

Query: 138 -SVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKY 196
             +D E  +A V+ G T+G++   +A K  + G   G      VGG I     G    +Y
Sbjct: 57  LEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERY 116

Query: 197 GLGADNVLDARIVDANGKILD 217
           GL  DNVL   +V A+G+++ 
Sbjct: 117 GLTRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 535
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK11183564 D-lactate dehydrogenase; Provisional 99.92
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.91
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
KOG1232511 consensus Proteins containing the FAD binding doma 99.89
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.85
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.84
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.84
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.83
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.81
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.8
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.7
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.67
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.65
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.62
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.6
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.56
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.47
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.4
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.1
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.49
PRK09799258 putative oxidoreductase; Provisional 94.61
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 93.97
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.58
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 92.36
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 90.46
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 90.46
PLN00107257 FAD-dependent oxidoreductase; Provisional 90.19
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 89.32
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 86.73
PLN02906 1319 xanthine dehydrogenase 82.84
PLN00192 1344 aldehyde oxidase 82.67
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 82.34
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 81.46
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-38  Score=339.29  Aligned_cols=190  Identities=22%  Similarity=0.286  Sum_probs=169.8

Q ss_pred             cccCCCCCCCCceEEEEcCCHHHHHHHHHHHH--hcCCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCC------e-
Q 009399           67 NLRYLTPSMPKPEFIFTPLYESHVQAAVICSK--QLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRA------I-  137 (535)
Q Consensus        67 n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~--~~~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~------i-  137 (535)
                      ..+|.......|.+|++|+|++||+++|++|+  +++++|++||+|||+.|.+...++    ++|||++||+      + 
T Consensus        54 s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~G----ivIdms~Ln~i~~~~~ii  129 (525)
T PLN02441         54 SKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPGG----VVVDMRSLRGGVRGPPVI  129 (525)
T ss_pred             hcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCCe----EEEECCCCCCcCccCceE
Confidence            34677767789999999999999999999997  669999999999999988877554    9999999999      4 


Q ss_pred             EEcCCCCeEEEeCCCcHHHHHHHHHHcCCceeec-CCCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcEe
Q 009399          138 SVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFP-AGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKIL  216 (535)
Q Consensus       138 ~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i~  216 (535)
                      ++|.+..+|+|++|++|.++.+++.++|  ++.+ .+.+..++|||.+++||.|..+.+||..+|+|++++||+++|+++
T Consensus       130 ~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv  207 (525)
T PLN02441        130 VVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVV  207 (525)
T ss_pred             EEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEE
Confidence            7888999999999999999999999986  4433 366778999999999999999999999999999999999999999


Q ss_pred             c-ccCCCcchHHHhhcCCCCCcEEEEEEEEEEeecCceEEEEEEEecc
Q 009399          217 D-REAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTL  263 (535)
Q Consensus       217 ~-~~~~~~dLf~a~rG~~~g~~GiVt~~~~k~~p~~~~~~~~~~~~~~  263 (535)
                      + +..+|+|||||++||+ |+|||||++++|++|+|+.+.++.+.+..
T Consensus       208 ~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~  254 (525)
T PLN02441        208 TCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD  254 (525)
T ss_pred             EeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence            7 6678999999999998 89999999999999999977776666654

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-132
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-123
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-113
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-94
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 4e-94
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-94
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-94
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 6e-93
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 6e-93
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 7e-93
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 4e-22
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 2e-19
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 7e-19
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 4e-16
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 1e-15
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 9e-13
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 6e-10
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 1e-08
3pm9_A476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 3e-06
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  468 bits (1203), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/514 (45%), Positives = 346/514 (67%), Gaps = 16/514 (3%)
Query: 30  DSFIHCLNSN--SDLSVPFSTFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYE 87
           ++F+ C + +  ++++ P   +  Q +  + SIL S+ QNLR+++ + PKP  I TP   
Sbjct: 5   ENFLKCFSKHIPNNVANPKLVYT-QHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 63
Query: 88  SHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAW 147
           SH+QA ++CSK++G+ +R RSGGHD EG+SY+S++  PF++VDL  + +I +D+ S +AW
Sbjct: 64  SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQTAW 121
Query: 148 VQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDAR 207
           V+ GAT+GEVYY I EK++   FP G C ++GVGGH +GG YG++MR YGL ADN++DA 
Sbjct: 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 181
Query: 208 IVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLXXXXXXXXXXXXXXXLE-QG 266
           +V+ +GK+LDR++MGEDLFWAIRGGGG +FGII +WKIKL               +E  G
Sbjct: 182 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 241
Query: 267 ATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQR--TISTSYNALFLGGVDRLLQVM 324
             K+  +WQ +A K D+DL +        I +  G+   T+   ++++F GGVD L+ +M
Sbjct: 242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 301
Query: 325 QESFPELGLTQKDCIETSWIKSVLYIAGY----PSNTPPEVLLQGKSTFKNYFKAKSDFV 380
            +SFPELG+ + DC E SWI + ++ +G      +N   E+LL   +  K  F  K D+V
Sbjct: 302 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 361
Query: 381 REPIPETALEGLWKRFLEEE--GPLSIWNPYGGMMSKIAESAIPFPHRNGTLFKIQYVTN 438
           ++PIPETA+  + ++  EE+    + +  PYGG+M +I+ESAIPFPHR G ++++ Y  +
Sbjct: 362 KKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTAS 421
Query: 439 WQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLG-MNNKSNTSFIQATAWG 497
           W+  + N  KH+ W+R +YN+  PYVS  PR AY+NYRDLDLG  N+ S  ++ QA  WG
Sbjct: 422 WEKQEDN-EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWG 480
Query: 498 SRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPLP 531
            +YF  NF RLV+VKTKVDP+NFFR+EQSIPPLP
Sbjct: 481 EKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 0.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 0.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 0.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-179
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-177
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-172
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-124
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 3e-47
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 3e-38
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 3e-18
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 4e-17
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 1e-13
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 7e-09
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 6e-08
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 2e-07
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 9e-05
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 2e-04
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 5e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  613 bits (1581), Expect = 0.0
 Identities = 242/519 (46%), Positives = 349/519 (67%), Gaps = 14/519 (2%)

Query: 27  SVEDSFIHCLNSNSDLSVPFSTFC-DQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPL 85
           +  ++F+ C + +   +V        Q +  + SIL S+ QNLR+++ + PKP  I TP 
Sbjct: 2   NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61

Query: 86  YESHVQAAVICSKQLGIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNS 145
             SH+QA ++CSK++G+ +R RSGGHD EG+SY+S+   PF++VDL  + +I +D+ S +
Sbjct: 62  NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQ--VPFVVVDLRNMHSIKIDVHSQT 119

Query: 146 AWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVLD 205
           AWV+ GAT+GEVYY I EK++   FP G C ++GVGGH +GG YG++MR YGL ADN++D
Sbjct: 120 AWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179

Query: 206 ARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLE- 264
           A +V+ +GK+LDR++MGEDLFWAIRGGGG +FGII +WKIKLV VP   T+F+V K +E 
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239

Query: 265 QGATKILYRWQQVADKLDEDLFIRVIIQAAEIPERKGQ--RTISTSYNALFLGGVDRLLQ 322
            G  K+  +WQ +A K D+DL +        I +  G+   T+   ++++F GGVD L+ 
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVD 299

Query: 323 VMQESFPELGLTQKDCIETSWIKSVLYIAGY----PSNTPPEVLLQGKSTFKNYFKAKSD 378
           +M +SFPELG+ + DC E SWI + ++ +G      +N   E+LL   +  K  F  K D
Sbjct: 300 LMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLD 359

Query: 379 FVREPIPETALEGLWKRFLEEEGPLS--IWNPYGGMMSKIAESAIPFPHRNGTLFKIQYV 436
           +V++PIPETA+  + ++  EE+      +  PYGG+M +I+ESAIPFPHR G ++++ Y 
Sbjct: 360 YVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYT 419

Query: 437 TNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLGMNN-KSNTSFIQATA 495
            +W+  + N  KH+ W+R +YN+  PYVS  PR AY+NYRDLDLG  N  S  ++ QA  
Sbjct: 420 ASWEKQEDN-EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI 478

Query: 496 WGSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPLPLQQ 534
           WG +YF  NF RLV+VKTKVDP+NFFR+EQSIPPLP   
Sbjct: 479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPHH 517
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.96
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.91
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.91
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.9
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.89
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.85
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.79
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.1
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.38
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 96.96
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 94.25
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 94.24
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 93.21
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 91.77
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 89.38
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 84.06
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 81.19
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=9.3e-88  Score=723.69  Aligned_cols=502  Identities=48%  Similarity=0.945  Sum_probs=424.2

Q ss_pred             CcccHHHHhccCCCCCCCCc-eeecCCCCChhhHhhhccccccCCCCCCCCceEEEEcCCHHHHHHHHHHHHhcCCeEEE
Q 009399           28 VEDSFIHCLNSNSDLSVPFS-TFCDQTNSSFGSILQSSAQNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQLGIHLRV  106 (535)
Q Consensus        28 ~~~~~~~cl~~~~~~~~~~~-~~~~~~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v  106 (535)
                      +.++|.+||+.....+.|.+ .|++|++++|++.+.++.+|.||+....++|.+||+|+|++||+++|++|+++++||+|
T Consensus         3 ~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v   82 (518)
T 3vte_A            3 PRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRT   82 (518)
T ss_dssp             HHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEE
T ss_pred             hhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEE
Confidence            34689999998765555544 46899999999998888999999988889999999999999999999999999999999


Q ss_pred             EeCCCCCCCCccccCCCCCeEEEEcCCCCCeEEcCCCCeEEEeCCCcHHHHHHHHHHcCCceeecCCCCCcccccccccC
Q 009399          107 RSGGHDYEGLSYVSEIETPFIIVDLARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITG  186 (535)
Q Consensus       107 ~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~g  186 (535)
                      ||||||+.+.+.....  ++++|||++||+|++|+++++++||||+++++|+++|.++|.++.+++|.|+++||||+++|
T Consensus        83 rggGh~~~g~~~~~~~--~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~g  160 (518)
T 3vte_A           83 RSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSG  160 (518)
T ss_dssp             ESSCCCTTCTTTCCSS--SEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHT
T ss_pred             ECCCcCCCCCccCCCC--CeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCC
Confidence            9999999887743221  35999999999999999999999999999999999999998789999999999999999999


Q ss_pred             CCCCCCcccCCccccceeEEEEEecCCcEecccCCCcchHHHhhcCCCCCcEEEEEEEEEEeecCceEEEEEEEecch-h
Q 009399          187 GAYGSMMRKYGLGADNVLDARIVDANGKILDREAMGEDLFWAIRGGGGASFGIILSWKIKLVPVPETVTVFTVTKTLE-Q  265 (535)
Q Consensus       187 gg~g~~s~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~~~g~~GiVt~~~~k~~p~~~~~~~~~~~~~~~-~  265 (535)
                      ||+|+++++||+++|+|++++||++||++++.+.+++|||||+|||++|+|||||+++||++|.|+.++.|.+.+..+ +
T Consensus       161 Gg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~  240 (518)
T 3vte_A          161 GGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIH  240 (518)
T ss_dssp             CCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHH
T ss_pred             CCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHH
Confidence            999999999999999999999999999999755568999999999855899999999999999999888888877654 5


Q ss_pred             hHHHHHHHHHHHhhcCCccceeEEEEeeccCCc--cCCCceEEEEEEEEEeCCHhHHHHHHhhhCccCCCCcccceecCh
Q 009399          266 GATKILYRWQQVADKLDEDLFIRVIIQAAEIPE--RKGQRTISTSYNALFLGGVDRLLQVMQESFPELGLTQKDCIETSW  343 (535)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~l~~~~~~~~~~~~  343 (535)
                      ++.+++.+|+++.+++|+++++.+.+...++.+  ..++..+.+.+.++|+|+.+++.+.|.+.+++++....++.+++|
T Consensus       241 ~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w  320 (518)
T 3vte_A          241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSW  320 (518)
T ss_dssp             HHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECH
T ss_pred             HHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecch
Confidence            578899999999999999999988876532100  112223567788999999999999998888888776677889999


Q ss_pred             HHHHHHHhCCCCC-CC---ccccccCCCCCcccceeccccccCCCCHHHHHHHHHHHhhC--CCcEEEEeecCCCCCCCC
Q 009399          344 IKSVLYIAGYPSN-TP---PEVLLQGKSTFKNYFKAKSDFVREPIPETALEGLWKRFLEE--EGPLSIWNPYGGMMSKIA  417 (535)
Q Consensus       344 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~fk~~s~~~~~~l~~~~l~~~~~~~~~~--~~~~i~~~~~GG~i~~~~  417 (535)
                      ++++.+++.++.+ .+   .+.++++....+.+||.||+|+.++++++.++.+++++.+.  +.+.+.++++||++++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~  400 (518)
T 3vte_A          321 IDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEIS  400 (518)
T ss_dssp             HHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSC
T ss_pred             hhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCC
Confidence            9999888766543 34   45555554445567899999999899999999999988763  347889999999999999


Q ss_pred             CCCCCCccCCCceeEEEEEeeeCCChhhHHHHHHHHHHHHHhccccccCCCCcccccccCcccC-CCCCCCchhhhhhhh
Q 009399          418 ESAIPFPHRNGTLFKIQYVTNWQDGDKNMAKHMEWIRRLYNYMAPYVSMLPRAAYVNYRDLDLG-MNNKSNTSFIQATAW  496 (535)
Q Consensus       418 ~~ataf~~R~~~~~~~~~~~~w~~~~~~~~~~~~wi~~~~~~~~~~~~~~~~g~YvNy~d~dl~-~~~~~~~~~~~~~~~  496 (535)
                      .++|||+||++++|.+++.+.|++. +.++++.+|++++++.+.|+.++.++++|+||.|.|++ .+...+.++..+..|
T Consensus       401 ~~~TAf~hR~~~~~~~~~~~~w~~~-~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~w  479 (518)
T 3vte_A          401 ESAIPFPHRAGIMYELWYTASWEKQ-EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIW  479 (518)
T ss_dssp             TTSSSCCCCTTCCEEEEEEEEECCT-TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHHH
T ss_pred             CCCCcccccCcceEEEEEEEecCCc-chhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhhH
Confidence            9999999999558999999999543 35577889999999999999776678999999999876 211122334556679


Q ss_pred             hhhhhhhhHHHHHHhHhhcCCCCCcccCCCCCCCCC
Q 009399          497 GSRYFKDNFMRLVRVKTKVDPDNFFRHEQSIPPLPL  532 (535)
Q Consensus       497 ~~~yyG~n~~RL~~IK~kyDP~~vF~~~q~i~~~~~  532 (535)
                      ++.|||+||+||++||+||||+|||+++|||+|.+-
T Consensus       480 ~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          480 GEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             HHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            999999999999999999999999999999998753
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 535
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-16
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 5e-15
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 5e-05
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 3e-04
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 0.001
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 75.7 bits (185), Expect = 2e-16
 Identities = 33/179 (18%), Positives = 63/179 (35%), Gaps = 8/179 (4%)

Query: 77  KPEFIFTPLYESHVQAAV-IC--SKQLGIHLRVRSGGHDYEGLSYVSE--IETPFIIVDL 131
            P  +  P     + A +     +      +  R  GH   G ++     +     + D 
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 132 ARLRAISVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPAGLCTSLGVGGHITGGAYGS 191
           A    I+V  +             +V      +             L VGG ++      
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGISG 147

Query: 192 MMRKYGLGADNVLDARIVDANGKILD-REAMGEDLFWAIRGGGGASFGIILSWKIKLVP 249
              ++G    NVL+  ++  +G+++   + +  DLF A+ GG G  FG+I   +I + P
Sbjct: 148 QAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.98
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.84
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.84
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.83
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 94.92
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 94.09
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 94.03
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.6
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.59
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 93.1
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=4.9e-37  Score=291.24  Aligned_cols=178  Identities=18%  Similarity=0.275  Sum_probs=159.9

Q ss_pred             ccccCCCCCCCCceEEEEcCCHHHHHHHHHHHHhc---CCeEEEEeCCCCCCCCccccCCCCCeEEEEcCCCCCe-----
Q 009399           66 QNLRYLTPSMPKPEFIFTPLYESHVQAAVICSKQL---GIHLRVRSGGHDYEGLSYVSEIETPFIIVDLARLRAI-----  137 (535)
Q Consensus        66 ~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~---~~~v~v~ggGh~~~g~~~~~~~~~~~ivIdl~~~~~i-----  137 (535)
                      +..+|.......|.+|++|+|++||+++|++|+++   ++||++||+||++.+.+...++    |+|||++||+|     
T Consensus        18 ~~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~~----ividl~~l~~i~~~~~   93 (206)
T d1w1oa2          18 ASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGG----VVVNMASLGDAAAPPR   93 (206)
T ss_dssp             TSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTTS----EEEEGGGGGCSSSSCS
T ss_pred             hEECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCCC----Eeeeccccceeeecee
Confidence            34456555567999999999999999999999997   6899999999999988776655    99999999986     


Q ss_pred             -EEcCCCCeEEEeCCCcHHHHHHHHHHcCCceeecC-CCCCcccccccccCCCCCCCcccCCccccceeEEEEEecCCcE
Q 009399          138 -SVDIESNSAWVQTGATIGEVYYRIAEKSKIHGFPA-GLCTSLGVGGHITGGAYGSMMRKYGLGADNVLDARIVDANGKI  215 (535)
Q Consensus       138 -~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~-g~~~~vgigG~~~ggg~g~~s~~~G~~~d~v~~~~vV~~~G~i  215 (535)
                       ++|++..+++||||+++.||.++|.++|  +.++. +....++|||++++||+|..+++||..+|+|+++|+|++||++
T Consensus        94 ~~id~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~  171 (206)
T d1w1oa2          94 INVSADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEM  171 (206)
T ss_dssp             EEECTTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCE
T ss_pred             EEEecCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcE
Confidence             6899999999999999999999999986  54443 5667889999999999999999999999999999999999999


Q ss_pred             ec-ccCCCcchHHHhhcCCCCCcEEEEEEEEEEeec
Q 009399          216 LD-REAMGEDLFWAIRGGGGASFGIILSWKIKLVPV  250 (535)
Q Consensus       216 ~~-~~~~~~dLf~a~rG~~~g~~GiVt~~~~k~~p~  250 (535)
                      ++ +..+|+||||++||++ |+|||||+++||++|+
T Consensus       172 ~~~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         172 VTCSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEEESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             EEECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            97 5667999999999998 8999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure