Citrus Sinensis ID: 009416

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
Protein Sequence
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYKKQLIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKSLSITEDGELQHDVRSYYCFEGGEDIFEKIDDLSEVV
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHccccHHHHHHHHHHcccHHHHccccccEEEcccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccEEEEEEEEEcccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEEccccccEEEEEccccccEEEEEEccccEEEEEEcccccEEEEEEEEEccEEEEccccccccEEEccccccHHHHHHHcccccccccEEEEccccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEcccccccccccccccEEEEEEccccccEEEEEEHHHHHHHHHHHcccEEEEEEEEcccEEEEcccccccccccccEEcEEEEEEccccccEEcEEEccccccHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEccccccccccHEEEcccEEEEEEEcEEccccccccccHHHcEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccEEEEEEccccEEEEEEEcccccEEEEEccccEEEEEEccccccccEEEEEcccEEEEEEEccccccHHHccccccccHHEEEEccccccccEEEcccccEEEEEEEcccccEEEEccccccEEEEEcccccccccccccccccEEEccccccHcHHHHHHHHHHHHHHHHcccEEEEEEEcccEEEEEcHHccccccccccHHHEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHcccccEEEEEcccccccHHEEEEHHEHcccccccccccccccccHHHcccccEEccccccEEEEEEEEEccccEEEEEcccHHHHHHHHcHHccc
Coil and Loop (DISEMBL)
MMRIGVLEvdgistlpepilhhilsflpFKEVAQTCLLSKRWKQVWQtfpdvevggmftnprksKEILTSLEPALLNRQRKMISIKKFSLEldlinspenaslAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYcklqqpsenvklfSLRKLALREVCADDQAIASLIsgcplieyleirsceglesldlvnlsnLKEIILVNTSDIKRVEIKTSNVNALAIHQtylfpievnvsscgnlkclkfdflpiedewlcngisklplleylsmtkchkltsvrisspclKTLILECCDKLIQVeietpnlsifkyhgdlisfssnalslsetslcfsshlMVNIEWVVEYFEILAMFQKFSKVLNLqcregenvivpqelrqiqsppltsvkklnysvrtdswdfsVANVRARSSRFSIANVLDgllwtsphaemvsiehghlhkfsFQISYKkqliydgeiprccqslpvscwqhCINEVKvehtkslsitedgelqhDVRSYycfeggedIFEKIDDLSEVV
Flexible Loop (DISEMBL)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTfpdvevggmftnprkskeiLTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIlvntsdikrveIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVivpqelrqiqsppltsvkklnysvrtdswdfsVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYKKQLIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKslsitedgelqhDVRSYYCFEGGEDIFEKIDDLSEVV
Low Complexity Region (SEG)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYKKQLIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKSLSITEDGELQHDVRSYYCFEGGEDIFEKIDDLSEVV
Disordered region (IsUnstruct)
***IGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRK*KEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYKKQLIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKSLSITEDGELQHDVRSYYCFEGGEDIFEKI*******
Disordered Region (DISOPRED)
***********ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYKKQLIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKSLSITEDGELQHDVRSYYCFEGGEDIFEKIDDLSEVV
Disordered Region (DISEMBL)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYKKQLIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKSLSITEDGELQHDVRSYYCFEGGEDIFEKIDDLSEVV
Disordered Region (DISPRO)
*********DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYKKQLIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKSLSITEDGELQHDVRSYYCFEGGEDIFEKIDDLS***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYKKQLIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKSLSITEDGELQHDVRSYYCFEGGEDIFEKIDDLSEVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	535	2.2.26 [Sep-21-2011]
Q9LZ15	456	Putative F-box/LRR-repeat	yes	no	0.390	0.458	0.298	3e-16
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.394	0.453	0.297	1e-15
Q1PE04	258	F-box/LRR-repeat protein	no	no	0.340	0.705	0.319	1e-14
Q9LV26	456	Putative F-box/LRR-repeat	no	no	0.336	0.394	0.318	5e-14
Q501G5	307	F-box protein At5g03100 O	no	no	0.347	0.605	0.331	5e-14
Q9LYZ2	469	Putative F-box/LRR-repeat	no	no	0.342	0.390	0.291	7e-14
Q3EA38	427	Putative F-box/FBD/LRR-re	no	no	0.342	0.428	0.310	9e-14
Q9C7M1	422	Putative FBD-associated F	no	no	0.446	0.566	0.274	1e-13
Q9SMU0	443	Putative F-box/FBD/LRR-re	no	no	0.330	0.399	0.321	8e-12
Q84W80	481	F-box/LRR-repeat protein	no	no	0.347	0.386	0.305	1e-11

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 87.0 bits (214), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 112/241 (46%), Gaps = 32/241 (13%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEV----GGMFTNPRKS 64
            D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P +++    G M       
Sbjct: 26  ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDITLKHGAM------- 78

Query: 65  KEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL---VL 121
            + LTS    +         I  F L +DL  +          +  A+   V+ L   V 
Sbjct: 79  NQTLTSYTAPI---------ITSFKLVMDL--NSNTVPQVDSWIEFALSRNVQNLSVFVR 127

Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIAS 180
               S+    P+I +   SL +L+++       P+  V   SLR L LR     D++I +
Sbjct: 128 DFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHN 187

Query: 181 LISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY 240
           ++SGCP++E L + +C  LE LDL    NL+ +      DI +   +T  V  +A H  Y
Sbjct: 188 ILSGCPILESLTLDTCRLLERLDLSKSPNLRRL------DINQQYRRTGPVAIVAPHIYY 241

Query: 241 L 241
           L
Sbjct: 242 L 242

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 28/239 (11%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP--DVEVGGMFTNPRKSKE 66
            D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P  D+++    TN     +
Sbjct: 27  ADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIKLKHGETN-----Q 81

Query: 67  ILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL---VLVH 123
            LTS    +         I  F L +DL  +          +  A+   V+ L   V   
Sbjct: 82  TLTSYTAPI---------ITSFKLVMDL--NDNTVPQVDSWIEFALSRNVQNLSVFVRDF 130

Query: 124 WRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLI 182
             ++    P+I +   SL  L+++       P+  V   SLR L LR     D+++ +++
Sbjct: 131 TYTKTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNIL 190

Query: 183 SGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
           SGCP++E L + +C  LE LDL    NL+ +      DI R   +T  +  +A H  YL
Sbjct: 191 SGCPILESLTLDTCRLLERLDLSKSPNLRRL------DINRQYRRTGPIAIVAPHIYYL 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PE04|FBL25_ARATH F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana GN=FBL25 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 93/197 (47%), Gaps = 15/197 (7%)

Query: 10  DGISTLPEPILHHILSFLPFKE-VAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
           D IS LP+ ILHHILSF+P    V +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct: 28  DSISNLPDEILHHILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTL 87

Query: 69  TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSER 128
            S   + +       S   +S E   ++S          +  A+   V  L L       
Sbjct: 88  ASYTASKITSFHLCTS---YSYEAGHVHS---------SIEFAMSHNVDNLSLAFSSFPP 135

Query: 129 RN-LPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
            N  P+  +   SL  +EL    L  PS  V   SLR L+L      D++   ++SGCP+
Sbjct: 136 CNKFPDFFYTSSSLKRVELRSASLT-PSCIVSWTSLRDLSLTRCNLSDKSFLKILSGCPI 194

Query: 188 IEYLEIRSCEGLESLDL 204
           +E L ++ CE L+ LDL
Sbjct: 195 LESLSLKFCESLKYLDL 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 79.7 bits (195), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 18/198 (9%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
           VD IS+LP+ IL HILSF+P K    T LLSKRW+ VW   P +             E L
Sbjct: 30  VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDETL 89

Query: 69  TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR--S 126
           T    +      KM+   +F L   LIN   N       +  A+   V  L L  W   +
Sbjct: 90  TRYTAS------KMM---RFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVA 137

Query: 127 ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCP 186
            +   P+      SL  L +    +   S+ +    L+KL L      D+++A+++ GCP
Sbjct: 138 NKFKFPDFFHINSSLKQLTV----VLDFSDTMIAICLKKLYLSTCLLSDESMANILFGCP 193

Query: 187 LIEYLEIRSCEGLESLDL 204
           ++E L +  C GL  LDL
Sbjct: 194 ILESLTLDHCGGLRVLDL 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q501G5|FB250_ARATH F-box protein At5g03100 OS=Arabidopsis thaliana GN=At5g03100 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 97/208 (46%), Gaps = 22/208 (10%)

Query: 1   MMRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN 60
           M R G   VD IS+LP+ ILHHIL+  P K   +T +LSKRWK VW   P + +     +
Sbjct: 1   MKRAGG-GVDFISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVD 59

Query: 61  PRKSKEILTSLEPALLNRQRKMISIKKFSLELDL-INSPENASLAGRCLGLAIESEVKEL 119
           P    + L+S              IK F + +   +  PE  +     L L+ ++E   L
Sbjct: 60  PDSLNKTLSSYSTP---------KIKSFDVTISRDVTVPEIDTWIN--LALSRKAENVSL 108

Query: 120 VLV-HWRSERRNLPEIIFYVESLHVLELS--YCKLQQPSENVKLFSLRKLALREVCADDQ 176
               H+R       +  F   SL  L L+  YC L  P   V   SLR L+L      D 
Sbjct: 109 RFTSHYR-----FRDTFFINSSLKQLSLTLVYCIL-NPKCVVSWSSLRNLSLNRCKVSDD 162

Query: 177 AIASLISGCPLIEYLEIRSCEGLESLDL 204
           +IA +++GC L+E L +  C+ L  LDL
Sbjct: 163 SIAKILTGCSLLESLTLNLCDRLNDLDL 190

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1

 Score = 79.3 bits (194), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 16/199 (8%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
           VD IS LP+ +L HI S++P +   +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct: 27  VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLKVSPKLINKTL 86

Query: 69  TSLEPALLNRQRKMISIKKFSLELDL--INSPENASLAGRCLGLAIESEVKELVLVHWR- 125
            S   +   + +      ++S E D   +NS          +  A+   V +L L   R 
Sbjct: 87  ASYTAS---KIKSFHLCTRYSYEADTHHVNS---------SIEFAMSHNVDDLSLAFRRC 134

Query: 126 SERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGC 185
           S   N  +  +   SL  +EL Y  L  P   V   SL+ L+L +    D++   ++SGC
Sbjct: 135 SPFYNFDDCFYTNSSLKRVELRYVDL-MPRCMVSWTSLKNLSLTDCTMSDESFLEILSGC 193

Query: 186 PLIEYLEIRSCEGLESLDL 204
           P++E L ++ C  L+ L+L
Sbjct: 194 PILESLSLKFCMSLKYLNL 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EA38|FDL48_ARATH Putative F-box/FBD/LRR-repeat protein At4g13965 OS=Arabidopsis thaliana GN=At4g13965 PE=4 SV=2

 Score = 79.0 bits (193), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 5   GVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKS 64
           G++  D IS LPE ++  ILS LP +    T +LSK+W+ +W+  P +    +     + 
Sbjct: 9   GIVNADRISQLPEALIIQILSLLPTEVAVTTSVLSKQWQFLWKMLPKLNFDSL-DQRHEF 67

Query: 65  KEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHW 124
           K    +++ ALL+ +  ++      + L L NS   A L    +G+A    +++LVL   
Sbjct: 68  KTFSKNVKRALLSHKAPVLHSLHLIVHLHLCNSMNTAKL----IGIAFACNLRKLVL-EV 122

Query: 125 RSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLIS 183
              R ++PE ++  E+L  LEL Y  L     ++ L SLR L L  V   D+++  +L+S
Sbjct: 123 DGGRFSIPESLYNCETLDTLELKYSILMDVPSSICLKSLRTLHLHYVDFKDNESALNLLS 182

Query: 184 GCPLIEYLEI 193
           GCP +E L +
Sbjct: 183 GCPNLENLVV 192

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7M1|FBD2_ARATH Putative FBD-associated F-box protein At1g55030 OS=Arabidopsis thaliana GN=At1g55030 PE=4 SV=1

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 125/270 (46%), Gaps = 31/270 (11%)

Query: 10  DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
           D IS LPEP++  IL  LP K    T +LSK+W+  W+  P +E           +  L 
Sbjct: 9   DMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFL-----RRLDLE 63

Query: 70  SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL-VHWRSER 128
           ++   LL+ +  ++      + LD  N   NA   G  +G+A+   V++LVL V++    
Sbjct: 64  NVTKCLLSHKAPVLQTFSLKVRLDRRN---NAVDIGCLIGIAMTRNVRKLVLEVYFHRGT 120

Query: 129 RNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLISGCPL 187
              P  +++ E+L  LEL    +     +V L SL+ L L  V   DD+++ +L+SGCP 
Sbjct: 121 FTFPRSLYHCETLETLELILNVVMDVPPSVYLKSLKTLYLLAVDFKDDESVINLLSGCPN 180

Query: 188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVN 247
           ++             DLV   N       ++S++K   I   ++  LAIH     P    
Sbjct: 181 LQ-------------DLVMRRN-------SSSNVKTFTIAVPSLQRLAIHNGSGTPQHCG 220

Query: 248 VS-SCGNLKCLKFDFLPIEDEWLCNGISKL 276
            + +  +LK LK +     + ++   +S+L
Sbjct: 221 YTINTPSLKYLKLEGSKAFESFMVENVSEL 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMU0|FDL18_ARATH Putative F-box/FBD/LRR-repeat protein At3g49030 OS=Arabidopsis thaliana GN=At3g49030 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 102/190 (53%), Gaps = 13/190 (6%)

Query: 10  DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
           D IS LPE +L  ILS +P + V  T +LSKRW+ +W+  P++     F +P+  +    
Sbjct: 21  DRISELPEDLLLQILSDIPTENVIATSVLSKRWRSLWKMVPNLTFDFTF-DPKYHQTFSE 79

Query: 70  SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHW---RS 126
           +L  +L + +  ++     SL+L+     +  ++ G  +  A    V++LVLV +   R 
Sbjct: 80  NLYRSLTSHEASVLE----SLQLNFTRGIDGLNI-GMWIATAYVRHVRKLVLVSFGDVRD 134

Query: 127 ERRNLPEIIF-YVESLHVLEL-SYCKLQQPSENVKLFSLRKLALREVCADDQA-IASLIS 183
           +R      +F + ++L +LE+  Y  L  PS  V L SLR+L L EV   D+A + +L+ 
Sbjct: 135 KRARFRSALFNFNDTLDILEIQDYILLDLPSP-VCLKSLRELRLYEVHFKDEASVCNLLC 193

Query: 184 GCPLIEYLEI 193
           GCP +E L +
Sbjct: 194 GCPSLEVLSV 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 17/203 (8%)

Query: 10  DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
           D IS LP+ IL  ILS+LP +   +T +LS+RW+ VW     +     F   R     + 
Sbjct: 37  DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLS----FHRDRPDAPCIN 92

Query: 70  SLEPALLNRQR--KMISIKKFS-LELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS 126
                +L+R R  KM+S +  S      I+ P+  +     +  A+   V+ L L +   
Sbjct: 93  R----ILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVENLSL-YLDE 147

Query: 127 ERRNLPEIIFYVESLHVLELSY-CKLQ----QPSENVKLFSLRKLALREVCADDQAIASL 181
           ++ ++PE ++   SL  L L + CK       P  +V   SL+ L+L      D++IA +
Sbjct: 148 DKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCNISDESIAII 207

Query: 182 ISGCPLIEYLEIRSCEGLESLDL 204
           +SGCP++E L +  C+ L+ LDL
Sbjct: 208 LSGCPILESLLLFFCKKLKVLDL 230

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.792	0.904	0.354	1e-63
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.792	0.904	0.354	2e-63
147833276	521	hypothetical protein VITISV_011919 [Viti	0.865	0.888	0.313	7e-42
297743071	552	unnamed protein product [Vitis vinifera]	0.876	0.849	0.322	8e-42
225442254	520	PREDICTED: putative F-box protein At3g44	0.872	0.898	0.323	1e-41
224119688	563	f-box family protein [Populus trichocarp	0.897	0.852	0.276	1e-33
224121624	528	predicted protein [Populus trichocarpa]	0.885	0.897	0.280	2e-33
357454743	761	Agglutinin alpha chain [Medicago truncat	0.852	0.599	0.271	2e-29
224124628	524	f-box family protein [Populus trichocarp	0.770	0.786	0.274	3e-29
449458245	575	PREDICTED: uncharacterized protein LOC10	0.852	0.793	0.256	2e-27

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 160/451 (35%), Positives = 247/451 (54%), Gaps = 27/451 (5%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN-----PRK 63
           +D IS LP+PIL HILSFL  K++ QT +LSKRW  +W TFP  E    F +       K
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 64  SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL--VL 121
              ++  +E  L    +++  ++KF L  D    P +  +  R +   +ES V+EL  V+
Sbjct: 61  RFHLINFVEQTL----KQLKCLRKFKLHTDF-PEPNSMVVVDRWIDYVLESGVQELEIVV 115

Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL 181
                +R NLP+ +F  +SL VL +  CKL    +  KL S++ ++L  V A+D+ +  L
Sbjct: 116 TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDETVKRL 175

Query: 182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
           +S CP I+++++ SC GL +L L   + L  + + N S +     K  N+ A      + 
Sbjct: 176 VSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQFQ 235

Query: 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
            P  +N+SSC NLK LK   + I D+W     S+ PLLE L+++ CH L S+RISS  LK
Sbjct: 236 -PCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLK 294

Query: 302 TLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEY 361
             IL  C+ + +V+I+TP LS  ++ GD+ISFS NA +LS+  +  S  +  N  WVV+ 
Sbjct: 295 KFILCGCESVTRVDIDTPCLSGLEFSGDVISFSLNAPALSQADIELSPRIFDN-PWVVKQ 353

Query: 362 FEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANV 421
            E LA F    K L LQ + G++V++PQELR+    PL  VK L   +           +
Sbjct: 354 IEFLAHFNHL-KSLTLQSQTGKSVVIPQELRETFGSPLYGVKHLKLRI-----------I 401

Query: 422 RARSSRFSIANVLDGLLWTSPHAEMVSIEHG 452
           +   S  S+ +++  LLW +P  + +++E G
Sbjct: 402 KPLFSP-SLKDLVKALLWIAPQPQTIAVESG 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 160/451 (35%), Positives = 246/451 (54%), Gaps = 27/451 (5%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTN-----PRK 63
           +D IS LP+PIL HILSFL  K++ QT +LSKRW  +W TFP  E    F +       K
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIESKLQNK 60

Query: 64  SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL--VL 121
              ++  +E  L    +++  ++KF L  D    P +  +  R +   +ES V+EL  V+
Sbjct: 61  RFHLINFVEQTL----KQLKCLRKFKLHTDF-PEPNSMVVVDRWIDYVLESGVQELEIVV 115

Query: 122 VHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL 181
                +R NLP+ +F  +SL VL +  CKL    +  KL S++ ++L  V A+D+ +  L
Sbjct: 116 TVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLLSMKSVSLLGVFAEDETVKRL 175

Query: 182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
           +S CP I+++++ SC GL SL L   + L  + + N S +     K  N+ A      + 
Sbjct: 176 VSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNSGLYEFGTKAMNLQAFEFRGQFQ 235

Query: 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
            P  +N+SSC NLK LK   + I D+W     S+ PLLE L+++ CH L S+RISS  LK
Sbjct: 236 -PCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCHMLESLRISSSHLK 294

Query: 302 TLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEY 361
             IL  C+ + +V+I+ P LS  ++ GD+ISFS NA +LS+  +  S  +  N  WVV+ 
Sbjct: 295 KFILCGCESVTRVDIDAPCLSGLEFSGDVISFSLNAPALSQADIELSPRIFDN-PWVVKQ 353

Query: 362 FEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANV 421
            E LA F    K L LQ + G++V++PQELR+    PL  VK L   +           +
Sbjct: 354 IEFLAHFNHL-KSLTLQSQTGKSVVIPQELRETFGSPLYGVKHLKLRI-----------I 401

Query: 422 RARSSRFSIANVLDGLLWTSPHAEMVSIEHG 452
           +   S  S+ +++  LLW +P  + +++E G
Sbjct: 402 KPLFSP-SLKDLVKALLWIAPQPQTIAVESG 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (451), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 161/514 (31%), Positives = 264/514 (51%), Gaps = 51/514 (9%)

Query: 8   EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP------ 61
           E D IS LP+ IL  IL  LP K+VA++ LLS+ W+++           MF  P      
Sbjct: 4   EQDRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKLSPFS--SLSLLMFQCPDFLESC 61

Query: 62  RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKE 118
           RK+ ++   + +++ +L  R  K +++ +  L LDL +  E+ SL    +  A+E +VKE
Sbjct: 62  RKNTDVSSFINAIDSSLRLRP-KDVNLARLRLHLDL-DDIESESLIDSWIDAALERKVKE 119

Query: 119 LVL-VHWRSERR--NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADD 175
           L L +  RS  +   LP  IF   ++ VL L  C+L+    ++ L +LRKL LR++  D+
Sbjct: 120 LDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQCRLEI-CGDIDLPALRKLCLRQIRCDE 178

Query: 176 QAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALA 235
           QAI  LIS CPLIE L+I SC GL+ L +  L+NL  + ++   +++R+EI   ++  L 
Sbjct: 179 QAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVICCYNLRRIEIDAPSLQHLV 238

Query: 236 IHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI 295
            H   L P ++ ++ C  L+ L      I +++L N  S  P LE L +    +L  + I
Sbjct: 239 YHCGRL-PCDMVLTPCEFLRELILHDPHITNDFLQNLDSGFPNLERLEIDST-RLQRIEI 296

Query: 296 SSPCLKTLILECC--DKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSL-------- 345
           S   LK L L+     K  +++I+ PNL  F Y G  +  +S   S++ +SL        
Sbjct: 297 SHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSGYRMPLTSTISSMNTSSLREAEIHFR 356

Query: 346 CFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKL 405
            ++ +    I  + E+FE      K  +V+NL  +  E +I+P++LR I SPP+  +K L
Sbjct: 357 NYNDYSHFFIPQLKEFFEK----SKNCQVINLLIKSKEELIIPRKLRPILSPPVYDIKHL 412

Query: 406 NYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYKK 465
              V             +  SRF    ++D +LW   H + +SI  G   +F  ++ Y K
Sbjct: 413 YLRV-------------SYCSRFQY--IIDRMLWMC-HPQTLSILSGTNVRF-LKVLYNK 455

Query: 466 QLIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKS 499
                 E P+CC S  + CW+H + +V+++  +S
Sbjct: 456 -FRNKEENPKCCTSCSIKCWRHYLKDVQIDSDES 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 166/515 (32%), Positives = 262/515 (50%), Gaps = 46/515 (8%)

Query: 4   IGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP-- 61
           + V E D IS LP+ IL  ILS LP KE+A+T LLSK W+++   F  + V  MF +P  
Sbjct: 32  VMVEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKL-SPFSSLSVL-MFQSPDF 89

Query: 62  ----RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIES 114
               RK+ ++   + +++ +L  RQ K +S+ +  L L L N  E+ SL    +  A+E 
Sbjct: 90  FHSRRKNFDVSSFINAIDSSLRLRQ-KDVSLARLQLRLHL-NDIESESLIDSWIDAALER 147

Query: 115 EVKEL---VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV 171
           +VKEL   +L     E   LP  IF   ++ VL L  C+L+    +V L +LRKL LR++
Sbjct: 148 KVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLE-ICGDVDLPALRKLCLRKI 206

Query: 172 CADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNV 231
             D+QAI  LIS CPLIE L+I SC  L+ L +  L+NL  +++    +++R+EI   ++
Sbjct: 207 LCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSL 266

Query: 232 NALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291
                        +V  +    L+ L      I ++ L N +S +P LE L +    +L 
Sbjct: 267 QYFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDST-RLQ 325

Query: 292 SVRISSPCLKTLILECCD--KLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349
            + IS   LK L L   +  +  +++I+ PNL  F Y G  +  +S   S++ +SL  + 
Sbjct: 326 RIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMISSMNTSSLREAE 385

Query: 350 HLMVNIEWVVEYFEILAMFQKFSK-----VLNLQCREGENVIVPQELRQIQSPPLTSVKK 404
               N      +F IL + + F K     V+NL  +  E +I+P++LR I SPP+  +K 
Sbjct: 386 IHFRNCNDYSHFF-ILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLRPIPSPPVYDIKH 444

Query: 405 LNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYK 464
           L+  V                SRF    ++D +LW   H + +SIE     KF  ++ Y 
Sbjct: 445 LHLIV-------------YYCSRFQY--IIDRMLWMC-HPQTLSIETS--AKF-LKVLYN 485

Query: 465 KQLIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKS 499
           K      E P+CC S P  CW+H + +V+++  +S
Sbjct: 486 K-FSNKEENPKCCTSCPTKCWRHYLEDVQIDGDES 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 166/513 (32%), Positives = 261/513 (50%), Gaps = 46/513 (8%)

Query: 6   VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP---- 61
           V E D IS LP+ IL  ILS LP KE+A+T LLSK W+++   F  + V  MF +P    
Sbjct: 2   VEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKL-SPFSSLSVL-MFQSPDFFH 59

Query: 62  --RKSKEI---LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEV 116
             RK+ ++   + +++ +L  RQ K +S+ +  L L L N  E+ SL    +  A+E +V
Sbjct: 60  SRRKNFDVSSFINAIDSSLRLRQ-KDVSLARLQLRLHL-NDIESESLIDSWIDAALERKV 117

Query: 117 KEL---VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA 173
           KEL   +L     E   LP  IF   ++ VL L  C+L+    +V L +LRKL LR++  
Sbjct: 118 KELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLE-ICGDVDLPALRKLCLRKILC 176

Query: 174 DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNA 233
           D+QAI  LIS CPLIE L+I SC  L+ L +  L+NL  +++    +++R+EI   ++  
Sbjct: 177 DEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNLRRIEIDAPSLQY 236

Query: 234 LAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293
                      +V  +    L+ L      I ++ L N +S +P LE L +    +L  +
Sbjct: 237 FMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDST-RLQRI 295

Query: 294 RISSPCLKTLILECCD--KLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHL 351
            IS   LK L L   +  +  +++I+ PNL  F Y G  +  +S   S++ +SL  +   
Sbjct: 296 EISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMISSMNTSSLREAEIH 355

Query: 352 MVNIEWVVEYFEILAMFQKFSK-----VLNLQCREGENVIVPQELRQIQSPPLTSVKKLN 406
             N      +F IL + + F K     V+NL  +  E +I+P++LR I SPP+  +K L+
Sbjct: 356 FRNCNDYSHFF-ILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLRPIPSPPVYDIKHLH 414

Query: 407 YSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYKKQ 466
             V                SRF    ++D +LW   H + +SIE     KF  ++ Y K 
Sbjct: 415 LIV-------------YYCSRFQY--IIDRMLWMC-HPQTLSIETS--AKF-LKVLYNK- 454

Query: 467 LIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKS 499
                E P+CC S P  CW+H + +V+++  +S
Sbjct: 455 FSNKEENPKCCTSCPTKCWRHYLEDVQIDGDES 487

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 143/518 (27%), Positives = 249/518 (48%), Gaps = 38/518 (7%)

Query: 2   MRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVE-------V 54
           M I V   D IS LP+ +LH+ILS+L  + V +  +LSK W ++  +FP  +       +
Sbjct: 27  MGIRVDASDRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPVSDFSEDVLLL 86

Query: 55  GGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLIN-SPENASLAGRCLGLAIE 113
           G  +       + +  ++ +LL +        KF L +DL +  P+  S A   L LA +
Sbjct: 87  GKRYEIQDWKNKFIDFVQDSLLAQHHHNTRSHKFRLSMDLDSYDPQLTSRADHLLELATK 146

Query: 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELS-YCKLQQPSENVKLFSLRKLALREVC 172
             V E  L         LP  +   E + VL L+   KL  P + +   SLR L+L  V 
Sbjct: 147 CGVYEFDLNFQNISHYCLPRALLSAEEITVLRLNGNYKLSLPRDAINWPSLRVLSLMNVR 206

Query: 173 ADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSD--IKRVEIKTSN 230
            D+  + +LI GCPLIE L +  C G++S+ +     LKE + VN  D  ++R+EI   +
Sbjct: 207 VDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKE-VEVNEGDSVLERMEIHVPS 265

Query: 231 VNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIED---EWLCNGISKLPLLEYLSMT 285
           +     + T L      ++++ C NL+ LK  F  I +   +   + I++ P L+ L++ 
Sbjct: 266 LRTFC-YTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQVFQDLIAQFPALKVLALN 324

Query: 286 KCH--KLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKY--HGDLISFSSNALSLS 341
            C+   ++ ++IS+P L+ L L     L +V I +P+L  FK+  +G   +FS +  SL 
Sbjct: 325 -CYATSVSRIKISNPQLEKLQL-WSSALTKVTITSPSLHSFKHFTYGFPSAFSLDQSSLQ 382

Query: 342 ETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVI--VPQELRQIQSPPL 399
           + +L    H+     +  ++ ++      F+++  L  R     I  +P+ L  I  P L
Sbjct: 383 KATL----HVHKGALYSSDFLQLREYLGNFNQIRRLTLRINYVGIRFIPETLNNISIPAL 438

Query: 400 TSVKKLNYSV-RTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFS 458
             +K L   +  +     S+AN++         +++DGLLW   H E + +  G   +  
Sbjct: 439 PDIKHLKLKICPSTGASGSLANLK------DYRDIVDGLLWVC-HPETILLISGWSSENL 491

Query: 459 FQISYKKQLIYDGEIPRCCQSLPVSCWQHCINEVKVEH 496
           F     ++L+  GE   CC S  + CW+H + ++++EH
Sbjct: 492 FIQILCEKLMQGGEKQHCCTSSHIKCWRHDLKDIQIEH 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 150/535 (28%), Positives = 256/535 (47%), Gaps = 61/535 (11%)

Query: 9   VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEV-----GGMFTNPRK 63
           +D IS  P+ +LHHILSFLP K+V +T +LSKRWK V  T+P ++       G  ++   
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60

Query: 64  S-------KEILTSL----EPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAI 112
           S       +++LT      + ++    +   S++KF L L ++   E +S   + +   I
Sbjct: 61  SENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFL-VLPDLELSSHLDKWVQKVI 119

Query: 113 ESEVKELVL-------VHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLR 164
           E+  KE+         +H++ +  ++P+ IF  +S+ VL+L  C ++ + S  +KL SL+
Sbjct: 120 ENGAKEVDFGIDLPGYLHFK-KPYSMPDAIFAAKSVTVLKLFGCNVKLEESFCIKLHSLQ 178

Query: 165 KLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKR 223
           KLAL+EV  DD  +  +++ CPL+E + +R C GL+ + +  L  LK+  I  + S  + 
Sbjct: 179 KLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSHLSKPES 238

Query: 224 VEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281
           VEIK+ ++ +     T   + PI V+V +C  LK L      + +  L + + K  +LE 
Sbjct: 239 VEIKSPSLESFHCSFTVRSVKPI-VSVDACQGLKSLILSGSFVTELLLQDLVPKFHVLES 297

Query: 282 LSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLS 341
           L +  C  L  V+ISS  LK+L +  C+ ++ +EI TPNL   KY G ++  S       
Sbjct: 298 LRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVPVSLINAPSC 357

Query: 342 ETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVP----QELRQIQSP 397
              + FS    ++I W +   E LA   K ++++ L        I+     ++L    SP
Sbjct: 358 HWQVEFSLMNTLDILWYMTLKEFLA---KLNQLVYLHVYVYLTTIMSSLNLEDLSNNASP 414

Query: 398 PLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTS-PHAEMVSIEHGHLHK 456
            +               D  V  V + S   + AN +DGL + S P    +         
Sbjct: 415 YVV--------------DNVVLTVHSASPIMTYANFMDGLFFFSRPKNLFIRSTDEQKRY 460

Query: 457 FSFQISYKKQLIYDGEIPRCCQSLPVSCWQHCINEVKVEHTKSLSITEDGELQHD 511
             +   + K+ +       CC    V CW+H + EVK+    S   + DG + ++
Sbjct: 461 VEYLCGFSKRAL------SCCNHRKVKCWRHDLKEVKL---GSFVESADGMVDYN 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 245/520 (47%), Gaps = 64/520 (12%)

Query: 6   VLEVDGISTLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFPDV------EVGGMF 58
           V  VD IS LP+ +++HILSFL   ++  +T  LSKRW+ +W ++  +         G+ 
Sbjct: 38  VESVDRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAALIFYEQKFAAGIG 97

Query: 59  TNPRKSKE------ILTSLEPALLNRQRKMISIKKFSLEL---DLINSPENASLAGRCLG 109
                +KE      +  SL   L N     + I+K  L +   DL ++P    L    L 
Sbjct: 98  PEDGSNKENLFRQHVADSLHTYLANN----LQIQKLLLHMMSFDLTDAP----LVDSWLT 149

Query: 110 LAIESEVKELVL-VHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLA 167
            A+  +++E+ L + ++   R  LPE++   E+L  L LS C L++   N+ L  L+KL 
Sbjct: 150 SAVSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCILRR-CGNIMLPRLQKLY 208

Query: 168 LREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIK 227
           LR+V   +Q + +LIS CP IE L    C GL+ L  ++  +L  + + N + +K   I 
Sbjct: 209 LRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFL-YIHCDSLSRLEIHNCNQLKTAYIF 267

Query: 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287
             N++          P +VN+  C +LK L  +   +  ++  N  +K PLLE L +   
Sbjct: 268 APNLDTFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRDFCENQFNKFPLLEKLDLCIA 327

Query: 288 HKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISF---------SSNAL 338
            K+ S+ I + CL+ ++L+ C KL  V+I  P L  F+  G+ + +         +   +
Sbjct: 328 DKMKSITIFNRCLQRIVLKGCKKLTYVQIYAPKLVSFELKGETMPYFDFVTPFLLTDAKI 387

Query: 339 SLSETSLCFSSHLMVNIEWVVEYF-EILAMFQKFSKVLNLQCREGENVIVPQELRQIQSP 397
           SLS  +      L   + +++  F  +    + F  +++      +++I+ ++L  I+ P
Sbjct: 388 SLSTATESRDVGLGNQLWFMMRPFISLFFPVEGFKMIMH----SSKHIIIHEDLSSIKCP 443

Query: 398 PLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKF 457
           PL               D +   +++ +    + ++L GLL T  H E VSI     +KF
Sbjct: 444 PLH--------------DLTFEIIKSSA---CVEDILYGLLRTL-HPESVSIISSSGNKF 485

Query: 458 SFQISYKKQLIYDGEIPRCC--QSLPVSCWQHCINEVKVE 495
              + Y+   I D + P CC        CW+H + +VK E
Sbjct: 486 HESV-YEMIKIKDDD-PVCCIYNISKNKCWRHFLKDVKSE 523

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124628|ref|XP_002319379.1| f-box family protein [Populus trichocarpa] gi|222857755|gb|EEE95302.1| f-box family protein [Populus trichocarpa]

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 212/466 (45%), Gaps = 54/466 (11%)

Query: 6   VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDV---EVGGM----- 57
           + EVD IS LP+PI+ HI+S LP+K+ A+  +LSKR+   W +FP +   E   M     
Sbjct: 16  IQEVDLISELPDPIIQHIMSSLPYKDAARMSILSKRFASAWTSFPIIFLDETLNMGSCLE 75

Query: 58  FTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLA-GRCLGLAIESEV 116
            T  +K    L+ +  A L+R+R  +S++KFS    L NS E  +      +  AIE+ V
Sbjct: 76  LTGKQKLNSFLSYV-GAFLSRRRLDVSLEKFSFCFCLNNSSEQPNGGIENAICYAIENNV 134

Query: 117 KELVLVHWRSERR-----NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV 171
           KEL L       +     +LP  +   +S+ VL L    L+ P                 
Sbjct: 135 KELELDFVGKSFKCMAHYSLPMKVLSAQSVMVLSLKGFMLEPPQ---------------- 178

Query: 172 CADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNV 231
                   +L+   P I+ L +  C+G+++L  V+   LK ++L +   +++VEI  SN+
Sbjct: 179 --------NLVLDFPFIKELRLEKCKGMQTLS-VSSQTLKIVVLESCQRLEKVEIDASNL 229

Query: 232 NALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291
            + +          V++++C +L+ L      I DEW+ + +++   LE   +  C  L 
Sbjct: 230 ESFSFGGGANSSCSVDITACKSLEYLSLKNAEITDEWIKHEVAQFLRLEVFKVVGCRLLE 289

Query: 292 SVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLS-ETSLCFSSH 350
           +  +S+  LKT+ L  C  L ++EI + +L+ F Y G L+       S S    +  S  
Sbjct: 290 NFHVSNANLKTVELSDCSNLQKIEIYSRSLNTFVYGGQLMPSQVFIYSPSFHAKVSLSVD 349

Query: 351 LMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVR 410
             +  +W   + + L+ F    K L + C     +IVP + R    PPL  +K L     
Sbjct: 350 HPLPHDWFSSFRDFLSCFDH-CKELEIACSIEMALIVPIDSRDSLLPPLYDLKYLKV--- 405

Query: 411 TDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHK 456
                  VA    +S    +  +LD LLW +P   ++S   G   K
Sbjct: 406 -------VAKFPTKSE--DLVGLLDSLLWFAPRLTVLSFVSGSKEK 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus]

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 230/502 (45%), Gaps = 46/502 (9%)

Query: 9   VDGISTLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFP----------DVEVGGM 57
           VD IS LPE  +HHILSFL   KE A+T +LSK+W+  W++F             EVG  
Sbjct: 53  VDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYLKAEVG-- 110

Query: 58  FTNPRKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVK 117
             + ++ ++ + S++ +L +   + + I K  L +    +PE  S   R + +A E+ + 
Sbjct: 111 LNSDKQRQKFIDSIDNSLQSHLTQNLGIYKLVLRI----TPELVSHLKRWVDMAGENGLG 166

Query: 118 EL-VLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQ 176
           EL + V    +R  +P  +  +++L  L L         E ++  +L+KL LR +  D Q
Sbjct: 167 ELDIHVETTRKRCKVPLCMHSIKTLSGLRLQGL-YWSSFEALEFNNLQKLYLRRLHVDPQ 225

Query: 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAI 236
            I  L+S CPL+  L I  C GL +L +     L+ + L     ++RVE++  ++     
Sbjct: 226 LIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQCHFLRRVELQVPSLKTFWY 285

Query: 237 HQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRIS 296
                   ++N+ SC +LK L  +   + + +    +   P+LE L++++C KL  + I+
Sbjct: 286 CAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLLVSFPVLEKLNLSRCDKLQIIGIA 345

Query: 297 SPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIE 356
           +  L++L L CC +L  +++++       YHG  +  +   L L E  +   S    +  
Sbjct: 346 NVELQSLGLRCCKRLKHIDVDSLKPCSLDYHGREMVHAFGCLPLKEAKISLVSKKKEDPS 405

Query: 357 -WVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWD 415
            +      I +   +  K   +     +NVI+  E++ I  P L ++K       T++ D
Sbjct: 406 AFPTRNVFIRSFLGRHCKGFKIIVWFCKNVIIHDEIKDIFLPSLPNLKFHAIKPSTNAKD 465

Query: 416 FSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISYKKQLIYDGEIPR 475
                            +L+ LL T  H E + +       FS ++ +    I  GE+  
Sbjct: 466 -----------------LLEDLL-TKEHPERIIVASS----FSSEVPHALHKI-KGEVET 502

Query: 476 CCQSLPVS---CWQHCINEVKV 494
            C S   S   CW+H + + KV
Sbjct: 503 SCCSYINSNRKCWRHFLKDTKV 524

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
TAIR|locus:2151246	258	AT5G02920 "AT5G02920" [Arabido	0.4	0.829	0.3	8.9e-17
TAIR|locus:2143463	307	AT5G03100 "AT5G03100" [Arabido	0.528	0.921	0.295	1.8e-15
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.396	0.464	0.309	1.5e-14
TAIR|locus:2151231	458	AT5G02910 "AT5G02910" [Arabido	0.532	0.622	0.272	1.9e-14
TAIR|locus:2151261	469	AT5G02930 "AT5G02930" [Arabido	0.405	0.462	0.282	2e-14
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.491	0.576	0.288	5.3e-14
TAIR|locus:2088882	465	AT3G28410 "AT3G28410" [Arabido	0.396	0.455	0.292	9.3e-14
TAIR|locus:2101308	443	AT3G49030 "AT3G49030" [Arabido	0.343	0.415	0.323	1.1e-13
TAIR|locus:2010950	422	AT1G55030 "AT1G55030" [Arabido	0.375	0.476	0.303	1.2e-13
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.530	0.590	0.259	2.8e-13

TAIR|locus:2151246 AT5G02920 "AT5G02920" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 8.9e-17, P = 8.9e-17
 Identities = 69/230 (30%), Positives = 105/230 (45%)

Query:    10 DGISTLPEPILHHILSFLPFKE-VAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             D IS LP+ ILHHILSF+P    V +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct:    28 DSISNLPDEILHHILSFIPETNLVIRTSVLSKRWRHVWSKTPHLSFEWLMVSPKLINKTL 87

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSER 128
              S   + +       S   +S E   ++S          +  A+   V  L L       
Sbjct:    88 ASYTASKITSFHLCTS---YSYEAGHVHSS---------IEFAMSHNVDNLSLAFSSFPP 135

Query:   129 RN-LPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
              N  P+  +   SL  +EL    L  PS  V   SLR L+L      D++   ++SGCP+
Sbjct:   136 CNKFPDFFYTSSSLKRVELRSASLT-PSCIVSWTSLRDLSLTRCNLSDKSFLKILSGCPI 194

Query:   188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237
             +E L ++ CE L+ LDL     L  + +   S   R  +++  + A  IH
Sbjct:   195 LESLSLKFCESLKYLDLSKSLRLTRLEIERRSCF-REPMQSMQIVAPHIH 243

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2143463 AT5G03100 "AT5G03100" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 93/315 (29%), Positives = 139/315 (44%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             VD IS+LP+ ILHHIL+  P K   +T +LSKRWK VW   P + +     +P    + L
Sbjct:     8 VDFISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVDPDSLNKTL 67

Query:    69 TSLEPALLNRQRKMISIKKFSLELDL-INSPENASLAGRCLGLAIESEVKELVLVHWRSE 127
             +S              IK F + +   +  PE        + LA+ S   E V + + S 
Sbjct:    68 SSYSTP---------KIKSFDVTISRDVTVPE----IDTWINLAL-SRKAENVSLRFTSH 113

Query:   128 RRNLPEIIFYVESLHVLELS--YCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGC 185
              R   +  F   SL  L L+  YC L  P   V   SLR L+L      D +IA +++GC
Sbjct:   114 YR-FRDTFFINSSLKQLSLTLVYCILN-PKCVVSWSSLRNLSLNRCKVSDDSIAKILTGC 171

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKRVEIKTSNVNALAIHQTYLFPI 244
              L+E L +  C+ L  LDL    +L+ + IL +    +R  I   ++  L + + Y  P 
Sbjct:   172 SLLESLTLNLCDRLNDLDLSKSLSLRRLEILGDRWTPER--IVAPHIRYLRL-ENYQRPS 228

Query:   245 E-VNVSSC--GNLKCLKFDFLPIEDEWLCN-GISKLPLLEYLSMTKCHKLTSVRISSPCL 300
               V+VSS    NL   K     + D + C      L  +   ++ K   +  + I    L
Sbjct:   229 TLVDVSSLTEANLGLSKH----VLDYFTCEMETESLQYMVRQTVVKLQNIKKLTIGGIFL 284

Query:   301 KTLIL-ECCDKLIQV 314
             + L L E C   + V
Sbjct:   285 QILSLAELCGVTLPV 299

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 73/236 (30%), Positives = 112/236 (47%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P +++           + LT
Sbjct:    27 DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIT---LKHGAMNQTLT 83

Query:    70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL-VLVH--WRS 126
             S    +         I  F L +DL NS          +  A+   V+ L V V     S
Sbjct:    84 SYTAPI---------ITSFKLVMDL-NS-NTVPQVDSWIEFALSRNVQNLSVFVRDFTYS 132

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
             +    P+I +   SL +L+++       P+  V   SLR L LR     D++I +++SGC
Sbjct:   133 KTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSLRNLTLRFCQIPDESIHNILSGC 192

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
             P++E L + +C  LE LDL    NL+ +      DI +   +T  V  +A H  YL
Sbjct:   193 PILESLTLDTCRLLERLDLSKSPNLRRL------DINQQYRRTGPVAIVAPHIYYL 242

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151231 AT5G02910 "AT5G02910" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 86/316 (27%), Positives = 140/316 (44%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             +D IS+LP+ ILHHILS +P K   +T LLSKRW+ VW   P + +     +P    + L
Sbjct:    10 MDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSETPSLSIDCRRADPNSIDKTL 69

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVH--WRS 126
             +               I  F L   L+N  +  S+ G C+  AI    ++L L    +R 
Sbjct:    70 SFFSAP---------KITSFHLHTTLLNRID--SVNG-CIEFAISHNAEKLSLESRDYRV 117

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
                  P+  +   S+  L +    +   P   V   SL+ L+L      D++   ++SG 
Sbjct:   118 RNYKFPDFFYTNSSVKQLFVDSGSVHLIPRCTVSWTSLKNLSLSNCTLSDESFLKILSGS 177

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSD--IKRVEIKTSNVNALAIHQTYLFP 243
             PL+E LE+  C     LDL    +L+ +  ++ SD  +   +I   +++ L +  + L  
Sbjct:   178 PLLESLELLYCAEYMCLDLSQSQHLRRLE-IDRSDWFMGPTKIVAPHLHCLRLRHSRLPC 236

Query:   244 IEVNVSSC---------GNLKCLKFDFLP---IEDEWLCNGISKLPLL-EYLSMTKCHKL 290
               V+VSS          G+LK +   FL    ++   +   + KL +   +L M     L
Sbjct:   237 SLVDVSSLTEADLNIYFGDLKTVTAGFLQHNVVKMLQMLQNVEKLTIGGTFLQMLSLAAL 296

Query:   291 TSVRISSPCLKTLILE 306
               V   +  +KTL LE
Sbjct:   297 CGVPFPTLKVKTLTLE 312

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151261 AT5G02930 "AT5G02930" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 65/230 (28%), Positives = 109/230 (47%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             VD IS LP+ +L HI S++P +   +T +LSKRW+ VW   P +    +  +P+   + L
Sbjct:    27 VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLKVSPKLINKTL 86

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SE 127
              S   + +   +      ++S E D  +   N+S+       A+   V +L L   R S 
Sbjct:    87 ASYTASKI---KSFHLCTRYSYEADTHHV--NSSIE-----FAMSHNVDDLSLAFRRCSP 136

Query:   128 RRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL 187
               N  +  +   SL  +EL Y  L  P   V   SL+ L+L +    D++   ++SGCP+
Sbjct:   137 FYNFDDCFYTNSSLKRVELRYVDLM-PRCMVSWTSLKNLSLTDCTMSDESFLEILSGCPI 195

Query:   188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237
             +E L ++ C  L+ L+L     L  + +   S I R  + +  + A  IH
Sbjct:   196 LESLSLKFCMSLKYLNLSKSLRLTRLEIERISYI-RAPMLSMQIVAPYIH 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 5.3e-14, P = 5.3e-14
 Identities = 84/291 (28%), Positives = 134/291 (46%)

Query:     9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEIL 68
             VD IS+LP+ IL HILSF+P K    T LLSKRW+ VW   P +             E L
Sbjct:    30 VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDETL 89

Query:    69 TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR--S 126
             T    +      KM+   +F L   LIN   N       +  A+   V  L L  W   +
Sbjct:    90 TRYTAS------KMM---RFHLHTSLIN---NVPHLESWIKFAMSRNVDHLSLDLWNQVA 137

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCP 186
              +   P+  F++ S  + +L+   +   S+ +    L+KL L      D+++A+++ GCP
Sbjct:   138 NKFKFPDF-FHINS-SLKQLTV--VLDFSDTMIAICLKKLYLSTCLLSDESMANILFGCP 193

Query:   187 LIEYLEIRSCEGLESLDLVNLSNLKEI-ILVN--TSDIKRVEIKTSNVNALAIHQTYLFP 243
             ++E L +  C GL  LDL     L+ + I  N    ++  ++I   + + L +  + L  
Sbjct:   194 ILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIWVPELTAMQIVAPHTHCLRLRNSKLPC 253

Query:   244 IEVNVSSCGNLK---CLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291
               V+VSS    K   C+      I+ ++L   ++ L +LE L   +  KLT
Sbjct:   254 SLVDVSSLKEAKLNICIDSFSKTIKADFL--QVTLLKMLEKLHNVE--KLT 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088882 AT3G28410 "AT3G28410" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 9.3e-14, P = 9.3e-14
 Identities = 69/236 (29%), Positives = 112/236 (47%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D I+ +P+ ILHHILSF+P     +T +LS+RW+ VW   P +++        ++ + LT
Sbjct:    28 DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDIK---LKHGETNQTLT 84

Query:    70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKEL-VLVH--WRS 126
             S    +         I  F L +DL  +          +  A+   V+ L V V     +
Sbjct:    85 SYTAPI---------ITSFKLVMDL--NDNTVPQVDSWIEFALSRNVQNLSVFVRDFTYT 133

Query:   127 ERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGC 185
             +    P+I +   SL  L+++       P+  V   SLR L LR     D+++ +++SGC
Sbjct:   134 KTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSLRNLTLRFCQIPDESMHNILSGC 193

Query:   186 PLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
             P++E L + +C  LE LDL    NL+ +      DI R   +T  +  +A H  YL
Sbjct:   194 PILESLTLDTCRLLERLDLSKSPNLRRL------DINRQYRRTGPIAIVAPHIYYL 243

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101308 AT3G49030 "AT3G49030" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 64/198 (32%), Positives = 106/198 (53%)

Query:     2 MRIGVLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNP 61
             +R  V E D IS LPE +L  ILS +P + V  T +LSKRW+ +W+  P++     F +P
Sbjct:    14 IRDAVKE-DRISELPEDLLLQILSDIPTENVIATSVLSKRWRSLWKMVPNLTFDFTF-DP 71

Query:    62 RKSKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL 121
             +  +    +L  +L + +  ++     SL+L+     +  ++ G  +  A    V++LVL
Sbjct:    72 KYHQTFSENLYRSLTSHEASVLE----SLQLNFTRGIDGLNI-GMWIATAYVRHVRKLVL 126

Query:   122 VHW---RSERRNLPEIIF-YVESLHVLELS-YCKLQQPSENVKLFSLRKLALREVCADDQ 176
             V +   R +R      +F + ++L +LE+  Y  L  PS  V L SLR+L L EV   D+
Sbjct:   127 VSFGDVRDKRARFRSALFNFNDTLDILEIQDYILLDLPSP-VCLKSLRELRLYEVHFKDE 185

Query:   177 A-IASLISGCPLIEYLEI 193
             A + +L+ GCP +E L +
Sbjct:   186 ASVCNLLCGCPSLEVLSV 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010950 AT1G55030 "AT1G55030" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 65/214 (30%), Positives = 112/214 (52%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D IS LPEP++  IL  LP K    T +LSK+W+  W+  P +E        R   E +T
Sbjct:     9 DMISQLPEPLILQILGSLPTKVAITTSVLSKQWQSHWKMMPKLEFDSFLR--RLDLENVT 66

Query:    70 SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVL-VHWRSER 128
                  LL+ +  ++  + FSL++ L +   NA   G  +G+A+   V++LVL V++    
Sbjct:    67 K---CLLSHKAPVL--QTFSLKVRL-DRRNNAVDIGCLIGIAMTRNVRKLVLEVYFHRGT 120

Query:   129 RNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREV-CADDQAIASLISGCPL 187
                P  +++ E+L  LEL    +     +V L SL+ L L  V   DD+++ +L+SGCP 
Sbjct:   121 FTFPRSLYHCETLETLELILNVVMDVPPSVYLKSLKTLYLLAVDFKDDESVINLLSGCPN 180

Query:   188 IEYLEIR--SCEGLESLDLVNLSNLKEIILVNTS 219
             ++ L +R  S   +++  +  + +L+ + + N S
Sbjct:   181 LQDLVMRRNSSSNVKTFTIA-VPSLQRLAIHNGS 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 79/304 (25%), Positives = 138/304 (45%)

Query:    10 DGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILT 69
             D IS LP+ IL  ILS+LP +   +T +LS+RW+ VW     +     F   R     + 
Sbjct:    37 DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLS----FHRDRPDAPCIN 92

Query:    70 SLEPALLNRQR--KMISIKKFSL-ELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS 126
              +    L+R R  KM+S +  S      I+ P+  +     +  A+   V+ L L +   
Sbjct:    93 RI----LDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVENLSL-YLDE 147

Query:   127 ERRNLPEIIFYVESLHVLELSY-CKLQ----QPSENVKLFSLRKLALREVCADDQAIASL 181
             ++ ++PE ++   SL  L L + CK       P  +V   SL+ L+L      D++IA +
Sbjct:   148 DKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCNISDESIAII 207

Query:   182 ISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYL 241
             +SGCP++E L +  C+ L+ LDL     L  + +     ++  ++   ++  L +  +  
Sbjct:   208 LSGCPILESLLLFFCKKLKVLDLSKSPRLITLEITRRCRMEPTQLVAPHIRCLRLINSEK 267

Query:   242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLK 301
                 V+VSS    + L      I D  L     +  +++ L   KC  +  + + +  LK
Sbjct:   268 PCALVDVSSLSQAE-LDITAYAIVDNKLEADFHQTMVVKMLE--KCQNVEKLTLGANFLK 324

Query:   302 TLIL 305
              L L
Sbjct:   325 MLSL 328

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034157001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (520 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	535
pfam00646	48	pfam00646, F-box, F-box domain	5e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	3e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP 50
          +  LP+ +L  ILS L  K++ +  L+SKRW+ +  +  
Sbjct: 3  LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLK 41

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 11/34 (32%), Positives = 23/34 (67%)

Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
          +S LP+ IL  I S+L  +++ +  L+ +RW+++
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWREL 34

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	535
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.75
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.72
KOG4341	483	consensus F-box protein containing LRR [General fu	99.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.59
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.58
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.56
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.4
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.38
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.25
KOG4341	483	consensus F-box protein containing LRR [General fu	99.02
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.01
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.88
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.8
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.68
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.66
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.64
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.63
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.6
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.51
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.41
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.37
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.37
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.35
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.28
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.21
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.18
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.13
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.08
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.75
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.67
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.58
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.55
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.45
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.44
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.39
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.27
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.15
PRK15386	426	type III secretion protein GogB; Provisional	97.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.93
PRK15386	426	type III secretion protein GogB; Provisional	96.88
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.86
PLN03150	623	hypothetical protein; Provisional	96.69
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.54
PLN03150	623	hypothetical protein; Provisional	96.44
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.37
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.96
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.85
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.42
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.26
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	94.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.72
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.52
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.27
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.24
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	93.87
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	93.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.49
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	92.65
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	92.58
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.55
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.8
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	86.13
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	86.07
PF13013	109	F-box-like_2: F-box-like domain	84.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	82.48

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.75  E-value=3e-18  Score=195.27  Aligned_cols=279  Identities=15%  Similarity=0.128  Sum_probs=196.4

Q ss_pred             hcCceEEEEeccCCCCccCCcccc-CCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      .++++.|++..+... ..+|..++ .+++|++|+|++|.+......+.+++|++|+|++|.+... ++..++.+++|++|
T Consensus        92 l~~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L  169 (968)
T PLN00113         92 LPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEE
Confidence            478999999876532 36787776 7899999999999885444456789999999999987432 33446789999999


Q ss_pred             EEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416          192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       192 ~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~  265 (535)
                      ++++|...+.+  .+.++++|++|++++|.-...++   ..+++|+.|++.++. ....+..++++++|++|++++|.+.
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence            99998754433  46678899999999884332222   267889999998887 4455667888999999999988877


Q ss_pred             hHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCccccccc---ccCCceeeEEEcCcch-----hhc
Q 009416          266 DEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFS  334 (535)
Q Consensus       266 ~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~---~~~p~L~~L~~~g~~~-----~~~  334 (535)
                      +..+.. +.++++|+.|++.++...+.++.   ...+|++|++++|.-...+.   ...++|+.|.+.++..     ..+
T Consensus       250 ~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~  328 (968)
T PLN00113        250 GPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL  328 (968)
T ss_pred             cccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence            654444 67788999999988765444443   34678888888775322222   3456788888877654     346


Q ss_pred             ccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416          335 SNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS  408 (535)
Q Consensus       335 ~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~  408 (535)
                      .++++|+.|++..+...+    .++..+.   .+++|+ .|.++.+.+. +.+|+     .+..+++|+.|++.
T Consensus       329 ~~l~~L~~L~L~~n~l~~----~~p~~l~---~~~~L~-~L~Ls~n~l~-~~~p~-----~~~~~~~L~~L~l~  388 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSG----EIPKNLG---KHNNLT-VLDLSTNNLT-GEIPE-----GLCSSGNLFKLILF  388 (968)
T ss_pred             hcCCCCCEEECcCCCCcC----cCChHHh---CCCCCc-EEECCCCeeE-eeCCh-----hHhCcCCCCEEECc
Confidence            678888888887664443    4455566   677888 7777755555 44554     33344556666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.72  E-value=1.1e-17  Score=190.70  Aligned_cols=148  Identities=20%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      .+|++|+++.+...+ .+|.  +.+++|++|+|++|.+.  .+..++++++|++|++++|.+... ++..+..+++|++|
T Consensus       118 ~~L~~L~Ls~n~l~~-~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L  193 (968)
T PLN00113        118 SSLRYLNLSNNNFTG-SIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFL  193 (968)
T ss_pred             CCCCEEECcCCcccc-ccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCee
Confidence            456666665543221 2232  23455555555555442  223344555555555555544211 11223445555555


Q ss_pred             EEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416          192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       192 ~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~  265 (535)
                      ++++|...+.+  .+..+++|+.|++++|.-...++   ..+++|++|++.++. .+..+..++++++|+.|+++++.+.
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            55555433222  23334445555544442111111   133444444444443 2223333444444444444444433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=3.3e-19  Score=162.65  Aligned_cols=262  Identities=21%  Similarity=0.282  Sum_probs=163.5

Q ss_pred             CCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhccCC---ceeeeccccCccchhHHHHHHHHHHhhcCCCCCceeEE
Q 009416           12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP---DVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKF   88 (535)
Q Consensus        12 is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~~~~---~l~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~l~~l   88 (535)
                      ++.|||||+..||+.|+.+|+.+++.|||||+++-+.-.   .++..+.-..+       ....+.+   +   .+|..|
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p-------~~l~~l~---~---rgV~v~  164 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP-------DVLGRLL---S---RGVIVF  164 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh-------hHHHHHH---h---CCeEEE
Confidence            678999999999999999999999999999987522211   12222111111       2233333   1   234444


Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHhcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCccccee
Q 009416           89 SLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKL  166 (535)
Q Consensus        89 ~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L  166 (535)
                      ++-  +... ..+..+..  ...+...+++++|+........+...+..|.+|+.|.|.+..+..+  ..++.=.+|+.|
T Consensus       165 Rla--r~~~-~~prlae~--~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l  239 (419)
T KOG2120|consen  165 RLA--RSFM-DQPRLAEH--FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL  239 (419)
T ss_pred             Ecc--hhhh-cCchhhhh--hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence            432  2111 11111111  1123346888888876555555666677789999999999888665  556677889999


Q ss_pred             EeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCcee---eeCC-CCCccEEEEeec-CCccEEeecCCcccEEEEeeec
Q 009416          167 ALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVN-LSNLKEIILVNT-SDIKRVEIKTSNVNALAIHQTY  240 (535)
Q Consensus       167 ~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~-l~~L~~L~l~~c-~~l~~~~~~~~~L~~L~l~~~~  240 (535)
                      +|+.+.. +..++..++++|..|.+|+|++|......   .+.+ .++|+.|++++| .++..-.+              
T Consensus       240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~--------------  305 (419)
T KOG2120|consen  240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL--------------  305 (419)
T ss_pred             ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH--------------
Confidence            9988765 77778888889999999999999765433   1111 267777777777 22221110              


Q ss_pred             ccCeEEecCcccccceeEeecc-CCChHHHHHhcCCCCCccEEEeecCCCCccc---cc-CCCCCceEEeccCcc
Q 009416          241 LFPIEVNVSSCGNLKCLKFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RI-SSPCLKTLILECCDK  310 (535)
Q Consensus       241 ~~~~~~~~~~l~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l---~~-~~~~L~~L~l~~c~~  310 (535)
                          ......||+|.+|+|+.+ .+++..... +..++.|++|.++.|..+..-   .. ..++|.+|++.+|-.
T Consensus       306 ----~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  306 ----STLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             ----HHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence                111234556666666533 344444444 567888888888888765321   11 457888888887743

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.65  E-value=5.6e-18  Score=161.60  Aligned_cols=359  Identities=19%  Similarity=0.246  Sum_probs=214.6

Q ss_pred             CcCC-CCCHHHHHHHHcCCChhHHHHHhhhhhhhHHh------hccCCceeeeccccCccchhHHHHHHHHHHhhcCCCC
Q 009416           10 DGIS-TLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKM   82 (535)
Q Consensus        10 D~is-~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~   82 (535)
                      +.++ .||+|++..|||+|+++.+.|++++|+-|...      |.......|..+..+        .+|...+   ++.+
T Consensus        69 ~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g--------~VV~~~~---~Rcg  137 (483)
T KOG4341|consen   69 NSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG--------GVVENMI---SRCG  137 (483)
T ss_pred             ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC--------cceehHh---hhhc
Confidence            3344 69999999999999999999999999999864      333322222221111        1122222   1111


Q ss_pred             CceeEEEEEEecCCCCCChhhHHHHHHHHHhcCceEEEEeccCCCCc-cCCccccCCCceeEEEEeCccccCC----CCc
Q 009416           83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERR-NLPEIIFYVESLHVLELSYCKLQQP----SEN  157 (535)
Q Consensus        83 ~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~~~~~----~~~  157 (535)
                                                     ..+++|++..+...+. .+-....+|+++++|.+.+|.....    ...
T Consensus       138 -------------------------------g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla  186 (483)
T KOG4341|consen  138 -------------------------------GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA  186 (483)
T ss_pred             -------------------------------cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH
Confidence                                           2466666666543222 2333345688888888888864222    223


Q ss_pred             ccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCcee----eeCCCCCccEEEEeecCCccE-----Eeec
Q 009416          158 VKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKR-----VEIK  227 (535)
Q Consensus       158 ~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~----~~~~l~~L~~L~l~~c~~l~~-----~~~~  227 (535)
                      ..++.|+.|++..|.. ++..+..+..+||+|++|++++|+.+..-    -..++..++.+...+|..+..     ....
T Consensus       187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~  266 (483)
T KOG4341|consen  187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY  266 (483)
T ss_pred             HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence            5688999999988644 77788888889999999999999877542    233455677776667733321     2224


Q ss_pred             CCcccEEEEeeec---ccCeEEecCcccccceeEeecc-CCChHHHHHhcCCCCCccEEEeecCCCCccccc-----CCC
Q 009416          228 TSNVNALAIHQTY---LFPIEVNVSSCGNLKCLKFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-----SSP  298 (535)
Q Consensus       228 ~~~L~~L~l~~~~---~~~~~~~~~~l~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-----~~~  298 (535)
                      ++-+..+++..|.   +...+..-..+..|+.|..+++ .+++..+..+..++++|+.|.+.+|..++....     .++
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~  346 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP  346 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence            4555555554554   1112222334677788877744 455566777777888888888888876554433     456


Q ss_pred             CCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEecccc-hhhHhHHHHHhhhhcccccceeEEE
Q 009416          299 CLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLM-VNIEWVVEYFEILAMFQKFSKVLNL  377 (535)
Q Consensus       299 ~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~l~~~~~l~~L~~~L~L  377 (535)
                      .|+.+++..|.....-.+.              ..-.+++.|+++.++-|.... ..+..+...-.   .+..++ .+.+
T Consensus       347 ~Le~l~~e~~~~~~d~tL~--------------sls~~C~~lr~lslshce~itD~gi~~l~~~~c---~~~~l~-~lEL  408 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLA--------------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC---SLEGLE-VLEL  408 (483)
T ss_pred             hhhhhcccccceehhhhHh--------------hhccCCchhccCChhhhhhhhhhhhhhhhhccc---cccccc-eeee
Confidence            7777777666543221110              122367888888887542111 00122233333   566677 7777


Q ss_pred             E-eeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEe
Q 009416          378 Q-CREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIE  450 (535)
Q Consensus       378 ~-~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~  450 (535)
                      + |+......+.      -+...++|+.+++..++     .+..           .....+-..+|+++..-+.
T Consensus       409 ~n~p~i~d~~Le------~l~~c~~Leri~l~~~q-----~vtk-----------~~i~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  409 DNCPLITDATLE------HLSICRNLERIELIDCQ-----DVTK-----------EAISRFATHLPNIKVHAYF  460 (483)
T ss_pred             cCCCCchHHHHH------HHhhCcccceeeeechh-----hhhh-----------hhhHHHHhhCccceehhhc
Confidence            7 6555422222      34466799998887655     2221           2223367788888877766

>PLN03210 Resistant to P

Probab=99.59  E-value=4.8e-15  Score=169.85  Aligned_cols=273  Identities=19%  Similarity=0.214  Sum_probs=137.3

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccC-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      +++.|.+..+.  ...+|..+ ...+|++|+++++.+.. +.....+++|+.|+|+++..- ..++. ++.+++|+.|+|
T Consensus       590 ~Lr~L~~~~~~--l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYP--LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCC--CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEe
Confidence            56666665543  23555544 45666667766665532 234455666666666654321 11111 345566666666


Q ss_pred             eecCCCcee--eeCCCCCccEEEEeecCCccEEee--cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChH-
Q 009416          194 RSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDE-  267 (535)
Q Consensus       194 ~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~--~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~-  267 (535)
                      .+|..+..+  .+..+++|+.|++++|..+..++.  .+++|+.|.+++|. ...++.   ..++|+.|+++++.+..- 
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFP  741 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccc
Confidence            666555443  344455666666666544444432  34555555555543 111110   112333333333221110 


Q ss_pred             ---------------------------HHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCcccccccc-
Q 009416          268 ---------------------------WLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEI-  316 (535)
Q Consensus       268 ---------------------------~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~-  316 (535)
                                                 .........++|+.|++++|+.+..+|.   ..++|+.|++.+|.+++.++. 
T Consensus       742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~  821 (1153)
T PLN03210        742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG  821 (1153)
T ss_pred             ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence                                       0000011235666777766666655554   345667777777766655542 


Q ss_pred             -cCCceeeEEEcCcch-hhc-ccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEE-eecccccccccccc
Q 009416          317 -ETPNLSIFKYHGDLI-SFS-SNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQ-CREGENVIVPQELR  392 (535)
Q Consensus       317 -~~p~L~~L~~~g~~~-~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~-~~~l~~~~~p~~~~  392 (535)
                       ..++|+.|.++|+.. ..+ ...++|+.|++..+..     ..++..+.   .+++|+ .|.+. |+.++  .+|.   
T Consensus       822 ~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i-----~~iP~si~---~l~~L~-~L~L~~C~~L~--~l~~---  887 (1153)
T PLN03210        822 INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI-----EEVPWWIE---KFSNLS-FLDMNGCNNLQ--RVSL---  887 (1153)
T ss_pred             CCccccCEEECCCCCccccccccccccCEeECCCCCC-----ccChHHHh---cCCCCC-EEECCCCCCcC--ccCc---
Confidence             345666677666543 111 1234566666643311     13455555   677777 66666 66665  3554   


Q ss_pred             ccCCCCcccceeeEEEEee
Q 009416          393 QIQSPPLTSVKKLNYSVRT  411 (535)
Q Consensus       393 ~~~~~~l~~L~~L~l~~~~  411 (535)
                        .+..+++|+.|+++.|+
T Consensus       888 --~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        888 --NISKLKHLETVDFSDCG  904 (1153)
T ss_pred             --ccccccCCCeeecCCCc
Confidence              44455666666666554

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.58  E-value=1.9e-16  Score=156.82  Aligned_cols=307  Identities=16%  Similarity=0.123  Sum_probs=200.2

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      .++++++.+..+.  ...+|.......+|+.|+|.+|.+...  .....+|.|++|||+.|.++.-... -+..-+++++
T Consensus       101 l~nLq~v~l~~N~--Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~ni~~  177 (873)
T KOG4194|consen  101 LPNLQEVNLNKNE--LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVNIKK  177 (873)
T ss_pred             CCcceeeeeccch--hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCCceE
Confidence            3688888877653  446777665667789999988877543  5567788899999988876321111 1334467999


Q ss_pred             EEEeecCC--CceeeeCCCCCccEEEEeec--CCccEEee-cCCcccEEEEeeecccCe-EEecCcccccceeEeeccCC
Q 009416          191 LEIRSCEG--LESLDLVNLSNLKEIILVNT--SDIKRVEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPI  264 (535)
Q Consensus       191 L~L~~c~~--l~~~~~~~l~~L~~L~l~~c--~~l~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~  264 (535)
                      |+|++|..  ++.-.+.++.+|..|.++.+  ..+....+ ++|.|+.|++..+..... ...|.++++|+.|.|..|++
T Consensus       178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I  257 (873)
T KOG4194|consen  178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI  257 (873)
T ss_pred             EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence            99988864  23336667778888888887  34444444 588999999988873222 45688888888888887776


Q ss_pred             ChHHHHHhcCCCCCccEEEeecCC--CCcccc-cCCCCCceEEeccCcccccccc----cCCceeeEEEcCcch-----h
Q 009416          265 EDEWLCNGISKLPLLEYLSMTKCH--KLTSVR-ISSPCLKTLILECCDKLIQVEI----ETPNLSIFKYHGDLI-----S  332 (535)
Q Consensus       265 ~~~~l~~l~~~~~~L~~L~L~~c~--~l~~l~-~~~~~L~~L~l~~c~~L~~l~~----~~p~L~~L~~~g~~~-----~  332 (535)
                      +.-.- ..+-.+.++++|+|....  .+..-+ .....|+.|+++.-. +..+.+    .+++|+.|.++.+..     .
T Consensus       258 ~kL~D-G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  258 SKLDD-GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             ccccC-cceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEeccccccccCChh
Confidence            54211 124567788888887632  111111 134566777765421 233332    347788888777665     4


Q ss_pred             hcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeec
Q 009416          333 FSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTD  412 (535)
Q Consensus       333 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~  412 (535)
                      .+..+..|++|.++.+....    .-...+.   .+++|+ +|+|..|.+. +.+.+.  ...+..+++|++|.+..   
T Consensus       336 sf~~L~~Le~LnLs~Nsi~~----l~e~af~---~lssL~-~LdLr~N~ls-~~IEDa--a~~f~gl~~LrkL~l~g---  401 (873)
T KOG4194|consen  336 SFRVLSQLEELNLSHNSIDH----LAEGAFV---GLSSLH-KLDLRSNELS-WCIEDA--AVAFNGLPSLRKLRLTG---  401 (873)
T ss_pred             HHHHHHHhhhhcccccchHH----HHhhHHH---Hhhhhh-hhcCcCCeEE-EEEecc--hhhhccchhhhheeecC---
Confidence            55667778888886553222    1233345   678888 8888877776 555431  11344578888888862   


Q ss_pred             CCccccchhcccccccchhHHhhhhhccCcccceEEEeecC
Q 009416          413 SWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGH  453 (535)
Q Consensus       413 ~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~  453 (535)
                                     .+++++....|.-.++||.|.+..++
T Consensus       402 ---------------Nqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  402 ---------------NQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             ---------------ceeeecchhhhccCcccceecCCCCc
Confidence                           45677777777777899999888665

>PLN03210 Resistant to P

Probab=99.56  E-value=1.5e-14  Score=165.85  Aligned_cols=258  Identities=20%  Similarity=0.223  Sum_probs=189.4

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCcc-ccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      .++++|++..+.  ...+|..+..+++|+.|+|+++. +...+.+..+++|++|+|++|... ..++..+..+++|+.|+
T Consensus       611 ~~L~~L~L~~s~--l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        611 ENLVKLQMQGSK--LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             cCCcEEECcCcc--ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEe
Confidence            578888887654  34677777788999999999875 333366778899999999887542 22344467889999999


Q ss_pred             EeecCCCceeee-CCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEec-----------------------
Q 009416          193 IRSCEGLESLDL-VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNV-----------------------  248 (535)
Q Consensus       193 L~~c~~l~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------------  248 (535)
                      +++|..++.+.. .++++|+.|++++|..+..++...++|+.|++.++....++..+                       
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~  767 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ  767 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence            999988877632 25789999999999777766655678899988877622222111                       


Q ss_pred             -------CcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc--CCCCCceEEeccCcccccccccCC
Q 009416          249 -------SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQVEIETP  319 (535)
Q Consensus       249 -------~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~l~~~~p  319 (535)
                             ...++|+.|+++++......+.. +.++++|+.|+|.+|..++.+|.  ..++|+.|++++|.++..+....+
T Consensus       768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~  846 (1153)
T PLN03210        768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST  846 (1153)
T ss_pred             ccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccccc
Confidence                   11346777778777655444444 67889999999999998888876  357899999999998877765567


Q ss_pred             ceeeEEEcCcch----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEE-eeccc
Q 009416          320 NLSIFKYHGDLI----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQ-CREGE  383 (535)
Q Consensus       320 ~L~~L~~~g~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~-~~~l~  383 (535)
                      +|+.|.+.++..    ..+.++++|+.|++..|....    .++..+.   .+++|+ .|.++ |..+.
T Consensus       847 nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~----~l~~~~~---~L~~L~-~L~l~~C~~L~  907 (1153)
T PLN03210        847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ----RVSLNIS---KLKHLE-TVDFSDCGALT  907 (1153)
T ss_pred             ccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC----ccCcccc---cccCCC-eeecCCCcccc
Confidence            899999888765    567788999999998775544    3444445   688888 88887 76665

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.40  E-value=3.2e-14  Score=141.17  Aligned_cols=275  Identities=15%  Similarity=0.117  Sum_probs=173.2

Q ss_pred             cCceEEEEeccCCCCccCCcc-ccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      +-++.|+|+.+...  .+|.. +..-.++++|+|++|.+...  ..+..+.+|.+|.|+.|+++.-.. ..++.+|+|+.
T Consensus       149 ~alrslDLSrN~is--~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~  225 (873)
T KOG4194|consen  149 PALRSLDLSRNLIS--EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKLES  225 (873)
T ss_pred             hhhhhhhhhhchhh--cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH-HHhhhcchhhh
Confidence            46777777765433  33332 22347899999999988544  567788899999999998854332 34778899999


Q ss_pred             EEEeecCC--CceeeeCCCCCccEEEEeec--CCccEEe-ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCC
Q 009416          191 LEIRSCEG--LESLDLVNLSNLKEIILVNT--SDIKRVE-IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPI  264 (535)
Q Consensus       191 L~L~~c~~--l~~~~~~~l~~L~~L~l~~c--~~l~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~  264 (535)
                      |+|..|..  .+.+.+.++++|+.|.+..+  ..+..=. ..+.+++.|++..+. .......+-++..|+.|+++.|.+
T Consensus       226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI  305 (873)
T KOG4194|consen  226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI  305 (873)
T ss_pred             hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence            99988864  34567788899999988777  3443322 367888888888776 322334566788888888888776


Q ss_pred             ChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCc--cccc-ccccCCceeeEEEcCcch------
Q 009416          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCD--KLIQ-VEIETPNLSIFKYHGDLI------  331 (535)
Q Consensus       265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~--~L~~-l~~~~p~L~~L~~~g~~~------  331 (535)
                      ....... -.-+++|+.|+|+.. .++.++.    ....|+.|.++.-.  .+.+ ......+|+.|+++.+..      
T Consensus       306 ~rih~d~-WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  306 QRIHIDS-WSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             heeecch-hhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence            5433333 345788888888873 2333333    12456666665322  1211 112334566665554433      


Q ss_pred             --hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416          332 --SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS  408 (535)
Q Consensus       332 --~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~  408 (535)
                        ..+.++++|++|++.++....    .....+.   ++.+|+ .|.|..|.+.  ++.++    .+.++ +|++|.+.
T Consensus       384 aa~~f~gl~~LrkL~l~gNqlk~----I~krAfs---gl~~LE-~LdL~~Naia--SIq~n----AFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  384 AAVAFNGLPSLRKLRLTGNQLKS----IPKRAFS---GLEALE-HLDLGDNAIA--SIQPN----AFEPM-ELKELVMN  447 (873)
T ss_pred             chhhhccchhhhheeecCceeee----cchhhhc---cCcccc-eecCCCCcce--eeccc----ccccc-hhhhhhhc
Confidence              355668888888887663333    2244455   688888 7777755544  33332    33344 77777765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.38  E-value=3e-15  Score=149.37  Aligned_cols=227  Identities=18%  Similarity=0.165  Sum_probs=137.2

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .++.|.|+..  ....+|..++.+.+|++|++++|++... .....+|+|+.+.+..|.+....++.-+-.+..|..|+|
T Consensus        33 ~~~WLkLnrt--~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL  110 (1255)
T KOG0444|consen   33 QMTWLKLNRT--KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL  110 (1255)
T ss_pred             heeEEEechh--hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence            4555555543  3446788888888888888888877433 556678888888888877744444444556677777777


Q ss_pred             eecCCCcee--eeCCCCCccEEEEeec---CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHH
Q 009416          194 RSCEGLESL--DLVNLSNLKEIILVNT---SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW  268 (535)
Q Consensus       194 ~~c~~l~~~--~~~~l~~L~~L~l~~c---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~  268 (535)
                      +.|.. +..  .+....++-.|+++++   .....+.+++..|-.|+++.+.....+..+..+.+|++|.|++|.+....
T Consensus       111 ShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ  189 (1255)
T KOG0444|consen  111 SHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQ  189 (1255)
T ss_pred             chhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHH
Confidence            77753 222  2333467777777776   11223334667777778888775556677778888888888888777666


Q ss_pred             HHHhcCCCCCccEEEeecCC-CCcccccCC---CCCceEEeccCcccc---cccccCCceeeEEEcCcch----hhcccC
Q 009416          269 LCNGISKLPLLEYLSMTKCH-KLTSVRISS---PCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI----SFSSNA  337 (535)
Q Consensus       269 l~~l~~~~~~L~~L~L~~c~-~l~~l~~~~---~~L~~L~l~~c~~L~---~l~~~~p~L~~L~~~g~~~----~~~~~l  337 (535)
                      +.. +..+++|+.|.+++.. .+..+|.+.   .+|..++++ |.+|.   +-....++|+.|+++|+..    ...+..
T Consensus       190 LrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W  267 (1255)
T KOG0444|consen  190 LRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEW  267 (1255)
T ss_pred             Hhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHH
Confidence            655 4556667777777632 233444432   244444443 22222   2223445666667766654    233334


Q ss_pred             cccceeEEE
Q 009416          338 LSLSETSLC  346 (535)
Q Consensus       338 ~~L~~L~l~  346 (535)
                      .+|+.|+++
T Consensus       268 ~~lEtLNlS  276 (1255)
T KOG0444|consen  268 ENLETLNLS  276 (1255)
T ss_pred             hhhhhhccc
Confidence            445555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.25  E-value=7e-14  Score=139.73  Aligned_cols=274  Identities=18%  Similarity=0.184  Sum_probs=167.8

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccc-cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      +.++.+.+..+......+|..++++..|+.|+|++|.+ ..|.....-.++-.|+|++|.+.. ....++.++..|-.|+
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLD  156 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhc
Confidence            45555555555556778999999999999999999988 444556677888999999998721 2234456677888888


Q ss_pred             EeecCCCcee--eeCCCCCccEEEEeecCC----ccEEeecCCcccEEEEeeec--ccCeEEecCcccccceeEeeccCC
Q 009416          193 IRSCEGLESL--DLVNLSNLKEIILVNTSD----IKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPI  264 (535)
Q Consensus       193 L~~c~~l~~~--~~~~l~~L~~L~l~~c~~----l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L~L~~~~~  264 (535)
                      |+.|. ++.+  .+..+..|++|.+++++-    +..++ .+.+|+.|.+++..  ...++.++.++.+|..++++.|.+
T Consensus       157 LS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L  234 (1255)
T KOG0444|consen  157 LSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL  234 (1255)
T ss_pred             cccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence            88875 3333  445577889999988721    22221 34567777787776  345677889999999999998876


Q ss_pred             ChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCccccccc---ccCCceeeEEEcCcch------h
Q 009416          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI------S  332 (535)
Q Consensus       265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~---~~~p~L~~L~~~g~~~------~  332 (535)
                      ..  ++.-+-++++|+.|+|++.. ++.+..   .-.+|++|+++... |..++   ...++|+.|-...+..      .
T Consensus       235 p~--vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  235 PI--VPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             Cc--chHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence            43  22224567899999999843 222221   12355555554321 11111   1122232222211111      3


Q ss_pred             hcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEe
Q 009416          333 FSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVR  410 (535)
Q Consensus       333 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~  410 (535)
                      .++.+..|+.+....+...     .+|+.+-   .+..|+ .|.+.+|.+-  .+|+     .+.-++.|+.|++...
T Consensus       311 GIGKL~~Levf~aanN~LE-----lVPEglc---RC~kL~-kL~L~~NrLi--TLPe-----aIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLE-----LVPEGLC---RCVKLQ-KLKLDHNRLI--TLPE-----AIHLLPDLKVLDLREN  372 (1255)
T ss_pred             chhhhhhhHHHHhhccccc-----cCchhhh---hhHHHH-Hhccccccee--echh-----hhhhcCCcceeeccCC
Confidence            4455555555544332111     2344444   566677 7777776665  6676     6666777777777643

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.02  E-value=1.3e-11  Score=118.60  Aligned_cols=275  Identities=17%  Similarity=0.174  Sum_probs=169.5

Q ss_pred             CC-CceeEEEEeCccccCC----CCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCceeee----CC
Q 009416          137 YV-ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDL----VN  206 (535)
Q Consensus       137 ~~-~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~----~~  206 (535)
                      +| ..|+.|.+++|.-...    ....++|+++.|.+.++.. ++..+..+...|++|++|++..|..+....+    .+
T Consensus       135 Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  135 RCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG  214 (483)
T ss_pred             hhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence            44 6789999999864222    3346799999999999866 8888888888999999999999998866533    35


Q ss_pred             CCCccEEEEeecCCccE-----EeecCCcccEEEEeeecccCe---EEecCcccccceeEee-ccCCChHHHHHhcCCCC
Q 009416          207 LSNLKEIILVNTSDIKR-----VEIKTSNVNALAIHQTYLFPI---EVNVSSCGNLKCLKFD-FLPIEDEWLCNGISKLP  277 (535)
Q Consensus       207 l~~L~~L~l~~c~~l~~-----~~~~~~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~L~-~~~~~~~~l~~l~~~~~  277 (535)
                      +++|+++++++|+.+..     +..++..++.+...||.....   ...-..++.+..+++. .+.+++..+..+...+.
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            79999999999955443     333566666666666541110   0011223334444433 33455555555555666


Q ss_pred             CccEEEeecCCCCccccc-----CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEecccc
Q 009416          278 LLEYLSMTKCHKLTSVRI-----SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLM  352 (535)
Q Consensus       278 ~L~~L~L~~c~~l~~l~~-----~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~  352 (535)
                      .|+.|..++|..++....     .+.+|+.|.+..|.++...-..              ..-.+.+.|+.+++..+....
T Consensus       295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft--------------~l~rn~~~Le~l~~e~~~~~~  360 (483)
T KOG4341|consen  295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT--------------MLGRNCPHLERLDLEECGLIT  360 (483)
T ss_pred             HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh--------------hhhcCChhhhhhcccccceeh
Confidence            677777777666544322     3455666666665544222111              122468889999886653322


Q ss_pred             hhhHhHHHHHhhhhcccccceeEEEE-eeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchh
Q 009416          353 VNIEWVVEYFEILAMFQKFSKVLNLQ-CREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIA  431 (535)
Q Consensus       353 ~~~~~l~~~l~~~~~l~~L~~~L~L~-~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~  431 (535)
                        -..+.+.-.   +.+.|+ +|.++ |...++..+-.  +....-....|..|.+..+|                 .+.
T Consensus       361 --d~tL~sls~---~C~~lr-~lslshce~itD~gi~~--l~~~~c~~~~l~~lEL~n~p-----------------~i~  415 (483)
T KOG4341|consen  361 --DGTLASLSR---NCPRLR-VLSLSHCELITDEGIRH--LSSSSCSLEGLEVLELDNCP-----------------LIT  415 (483)
T ss_pred             --hhhHhhhcc---CCchhc-cCChhhhhhhhhhhhhh--hhhccccccccceeeecCCC-----------------Cch
Confidence              113555555   889999 88888 65444321110  01022345678888888666                 233


Q ss_pred             HHhhhhhccCcccceEEEe
Q 009416          432 NVLDGLLWTSPHAEMVSIE  450 (535)
Q Consensus       432 ~l~~~ll~~~p~Le~L~l~  450 (535)
                      ...-..+..|++||.+.+.
T Consensus       416 d~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  416 DATLEHLSICRNLERIELI  434 (483)
T ss_pred             HHHHHHHhhCcccceeeee
Confidence            3344477889999997765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.01  E-value=9.6e-10  Score=118.26  Aligned_cols=255  Identities=15%  Similarity=0.045  Sum_probs=160.1

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .+-..|+++.+..  ..+|..+.  ++|+.|.+++|.+...+.  ..++|++|++++|.++.  ++.   ..++|++|++
T Consensus       201 ~~~~~LdLs~~~L--tsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCC--CcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeec
Confidence            4556676666543  36887665  589999999998854332  36899999999998742  222   2478999999


Q ss_pred             eecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhc
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI  273 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~  273 (535)
                      .+|.. ..+.- ..++|+.|++.+| .+..++...++|+.|++++|....++.   ...+|+.|.+++|.++.  ++.  
T Consensus       270 s~N~L-~~Lp~-lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N~L~~--LP~--  339 (788)
T PRK15387        270 FSNPL-THLPA-LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS--LPT--  339 (788)
T ss_pred             cCCch-hhhhh-chhhcCEEECcCC-ccccccccccccceeECCCCccccCCC---CcccccccccccCcccc--ccc--
Confidence            88853 32211 1257888888887 344444456789999998887222222   12357778888777653  111  


Q ss_pred             CCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcc-cCcccceeEEEEecccc
Q 009416          274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSS-NALSLSETSLCFSSHLM  352 (535)
Q Consensus       274 ~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~-~l~~L~~L~l~~~~~~~  352 (535)
                       ..++|+.|+++++ .+..+|....+|+.|.+.+. .+..+.....+|+.|.++++....+. ..++|+.|+++.+....
T Consensus       340 -lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss  416 (788)
T PRK15387        340 -LPSGLQELSVSDN-QLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS  416 (788)
T ss_pred             -cccccceEecCCC-ccCCCCCCCcccceehhhcc-ccccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCC
Confidence             1247888888874 45556655567777776653 24444434457888888877652221 23468888886553222


Q ss_pred             hhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416          353 VNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT  411 (535)
Q Consensus       353 ~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~  411 (535)
                           ++..      ..+|+ .|.++.|.++  .+|+     .+..+++|+.|+|+..+
T Consensus       417 -----IP~l------~~~L~-~L~Ls~NqLt--~LP~-----sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        417 -----LPML------PSGLL-SLSVYRNQLT--RLPE-----SLIHLSSETTVNLEGNP  456 (788)
T ss_pred             -----CCcc------hhhhh-hhhhccCccc--ccCh-----HHhhccCCCeEECCCCC
Confidence                 2222      23456 6677766666  6776     56677888888887433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.88  E-value=7.1e-10  Score=110.05  Aligned_cols=82  Identities=20%  Similarity=0.163  Sum_probs=41.1

Q ss_pred             CceEEEEeccCCCC---ccCCccccCCCceeEEEEeCccccC-C-------CCcccCcccceeEeeeEeeCh---hHHHH
Q 009416          115 EVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQ-P-------SENVKLFSLRKLALREVCADD---QAIAS  180 (535)
Q Consensus       115 ~l~~L~L~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~~~~-~-------~~~~~l~~L~~L~L~~~~~~~---~~l~~  180 (535)
                      +++.+.+..+....   ..++..+...++|++|+++++.+.. +       ..+..+++|++|+++++.+..   ..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            47777776654321   2344444455666777766655431 1       122345566666666665532   11222


Q ss_pred             HHhCCCcccEEEEeecC
Q 009416          181 LISGCPLIEYLEIRSCE  197 (535)
Q Consensus       181 ~~~~~p~Le~L~L~~c~  197 (535)
                      +... ++|++|++++|.
T Consensus       104 l~~~-~~L~~L~ls~~~  119 (319)
T cd00116         104 LLRS-SSLQELKLNNNG  119 (319)
T ss_pred             Hhcc-CcccEEEeeCCc
Confidence            2222 446666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.80  E-value=4.9e-09  Score=71.37  Aligned_cols=36  Identities=33%  Similarity=0.731  Sum_probs=31.5

Q ss_pred             CCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhc
Q 009416           12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQ   47 (535)
Q Consensus        12 is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~   47 (535)
                      |+.||+||+.+||++|+.+|+++++.|||+|+++..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            578999999999999999999999999999998753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.80  E-value=2.4e-08  Score=107.62  Aligned_cols=236  Identities=17%  Similarity=0.077  Sum_probs=147.3

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .+++.|.+..+..  ..+|..   .++|++|+|++|.+...+.  ..++|+.|++++|.+.  .++.   ..+.|+.|++
T Consensus       222 ~~L~~L~L~~N~L--t~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L~--~Lp~---lp~~L~~L~L  289 (788)
T PRK15387        222 AHITTLVIPDNNL--TSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT--HLPA---LPSGLCKLWI  289 (788)
T ss_pred             cCCCEEEccCCcC--CCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccCCchh--hhhh---chhhcCEEEC
Confidence            4788888887543  356642   4899999999998854332  3578999999988763  2332   2357888888


Q ss_pred             eecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhc
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI  273 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~  273 (535)
                      .+|.. ..+.. ..++|+.|++++| .+..++...++|+.|.+.+|....++.   -..+|+.|+|++|.++.-  +   
T Consensus       290 s~N~L-t~LP~-~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~N~Ls~L--P---  358 (788)
T PRK15387        290 FGNQL-TSLPV-LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQLASL--P---  358 (788)
T ss_pred             cCCcc-ccccc-cccccceeECCCC-ccccCCCCcccccccccccCccccccc---cccccceEecCCCccCCC--C---
Confidence            88853 33321 2368999999887 333333233567788887776222221   113788888888877641  1   


Q ss_pred             CCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccC-cccceeEEEEecccc
Q 009416          274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNA-LSLSETSLCFSSHLM  352 (535)
Q Consensus       274 ~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l-~~L~~L~l~~~~~~~  352 (535)
                      ...++|+.|++.++ .+..++....+|+.|+++++ .+..+....++|+.|.++++....+... .+|+.|++..+... 
T Consensus       359 ~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt-  435 (788)
T PRK15387        359 TLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-  435 (788)
T ss_pred             CCCcccceehhhcc-ccccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCcCCCCCcchhhhhhhhhccCccc-
Confidence            12346777777763 34455555567888888665 3444544446778888877765222222 34677666544222 


Q ss_pred             hhhHhHHHHHhhhhcccccceeEEEEeeccc
Q 009416          353 VNIEWVVEYFEILAMFQKFSKVLNLQCREGE  383 (535)
Q Consensus       353 ~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~  383 (535)
                          .+++.+.   .+++++ .|.++.|.+.
T Consensus       436 ----~LP~sl~---~L~~L~-~LdLs~N~Ls  458 (788)
T PRK15387        436 ----RLPESLI---HLSSET-TVNLEGNPLS  458 (788)
T ss_pred             ----ccChHHh---hccCCC-eEECCCCCCC
Confidence                3455555   688888 7777776666

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.8e-09  Score=99.52  Aligned_cols=174  Identities=20%  Similarity=0.177  Sum_probs=100.1

Q ss_pred             CceeEEEEeCccccCC---CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee----eeCCCCCcc
Q 009416          139 ESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL----DLVNLSNLK  211 (535)
Q Consensus       139 ~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~----~~~~l~~L~  211 (535)
                      +.|++|||++..++..   .....|..|+.|.|.++.+++..... ++.-.+|+.|+|+.|.++...    -+.+++.|.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            4577777776554321   23345677777777777665443333 455567777777777766443    344566677


Q ss_pred             EEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCc-ccccceeEeeccC--CChHHHHHhcCCCCCccEEEeecCC
Q 009416          212 EIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSS-CGNLKCLKFDFLP--IEDEWLCNGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       212 ~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~L~~~~--~~~~~l~~l~~~~~~L~~L~L~~c~  288 (535)
                      .|++++|....+..                   .+.+.. -++|+.|+|+++.  +....+..+...||+|.+|++++|.
T Consensus       264 ~LNlsWc~l~~~~V-------------------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKV-------------------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             hcCchHhhccchhh-------------------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            77777662221110                   111111 1244444444332  2223455556789999999999987


Q ss_pred             CCcccc----cCCCCCceEEeccCccccc-ccccCCceeeEEEcCcchhhcccCcccceeEEEEe
Q 009416          289 KLTSVR----ISSPCLKTLILECCDKLIQ-VEIETPNLSIFKYHGDLISFSSNALSLSETSLCFS  348 (535)
Q Consensus       289 ~l~~l~----~~~~~L~~L~l~~c~~L~~-l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~  348 (535)
                      .++.--    ..++.|++|.++.|..+.. ..                ..+...|+|..|++.++
T Consensus       325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~----------------~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  325 MLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL----------------LELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccCchHHHHHHhcchheeeehhhhcCCChHHe----------------eeeccCcceEEEEeccc
Confidence            766421    1567888999988876511 11                12345677888887766

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=2.4e-09  Score=103.69  Aligned_cols=151  Identities=16%  Similarity=0.182  Sum_probs=108.1

Q ss_pred             CCCceeEEEEeCccccCCC---CcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCC
Q 009416          137 YVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSN  209 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~  209 (535)
                      +..+|+...|.++.+..+.   ....|++++.|+|++|-+ .-..+..++.-+|+||.|+|+.|...-.+   ....+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4567777788887765442   456788899999988877 44566777888899999999888654221   2224688


Q ss_pred             ccEEEEeec----CCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEe
Q 009416          210 LKEIILVNT----SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM  284 (535)
Q Consensus       210 L~~L~l~~c----~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L  284 (535)
                      |+.|.++.|    ..+..+...+|+|+.|.+.++. ..........+..|+.|+|++|.+.+.........+|.|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            999999999    2344444588999999998885 22222334457789999999888776554444778899999988


Q ss_pred             ecC
Q 009416          285 TKC  287 (535)
Q Consensus       285 ~~c  287 (535)
                      +.|
T Consensus       279 s~t  281 (505)
T KOG3207|consen  279 SST  281 (505)
T ss_pred             ccc
Confidence            875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.64  E-value=8.6e-09  Score=102.27  Aligned_cols=105  Identities=26%  Similarity=0.206  Sum_probs=62.5

Q ss_pred             cCceEEEEeccCCCC-----ccCCccccCCCceeEEEEeCccccC--CCCcccC---cccceeEeeeEeeChhHHH---H
Q 009416          114 SEVKELVLVHWRSER-----RNLPEIIFYVESLHVLELSYCKLQQ--PSENVKL---FSLRKLALREVCADDQAIA---S  180 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~-----~~lp~~l~~~~~L~~L~L~~~~~~~--~~~~~~l---~~L~~L~L~~~~~~~~~l~---~  180 (535)
                      ++++++.+.......     ..++..+..+++|++|++++|.+..  +..+..+   ++|++|++++|.+++....   .
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            357777776543221     1233445567888888888887742  1223333   4488888888887543333   2


Q ss_pred             HHhCC-CcccEEEEeecCCCce----e--eeCCCCCccEEEEeec
Q 009416          181 LISGC-PLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNT  218 (535)
Q Consensus       181 ~~~~~-p~Le~L~L~~c~~l~~----~--~~~~l~~L~~L~l~~c  218 (535)
                      .+..+ ++|++|++++|.....    +  .+..+++|++|++++|
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  175 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN  175 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence            34455 7888888888864421    1  2333456777776665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.63  E-value=1.8e-10  Score=110.20  Aligned_cols=57  Identities=18%  Similarity=0.269  Sum_probs=40.2

Q ss_pred             CCCCccEEEEeecCCccEEe---ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCC
Q 009416          206 NLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (535)
Q Consensus       206 ~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~  264 (535)
                      .+++|..|++..+ ++++++   .-+.+|++|+++++.....+.+++++ +|+.|.+.+|.+
T Consensus       250 ~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  250 HLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             ccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            4677777777776 444443   24567888888888755667788888 888888877765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.60  E-value=5.3e-09  Score=110.11  Aligned_cols=141  Identities=16%  Similarity=0.163  Sum_probs=83.0

Q ss_pred             EEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCcccccCCCCCceEEeccCccccccc-ccCCceee
Q 009416          245 EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVE-IETPNLSI  323 (535)
Q Consensus       245 ~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~-~~~p~L~~  323 (535)
                      ...+..+.+  .|+|..|.+....    +.++++|+.|.... ..+..+....++|+.|....|+-..... ....+|++
T Consensus       173 ~~~i~~l~~--~ldLr~N~~~~~d----ls~~~~l~~l~c~r-n~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~  245 (1081)
T KOG0618|consen  173 LIDIYNLTH--QLDLRYNEMEVLD----LSNLANLEVLHCER-NQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQY  245 (1081)
T ss_pred             hcchhhhhe--eeecccchhhhhh----hhhccchhhhhhhh-cccceEEecCcchheeeeccCcceeecccccccccee
Confidence            334444444  4777777665211    34566666665543 3455555666778888877776542222 12236677


Q ss_pred             EEEcCcch----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCc
Q 009416          324 FKYHGDLI----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPL  399 (535)
Q Consensus       324 L~~~g~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l  399 (535)
                      +.++-...    .++..+++|+.+.+..+.. .    .++.-+.   .+++|+ .|.+.-+.++  .+|+     ...++
T Consensus       246 ~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~----~lp~ri~---~~~~L~-~l~~~~nel~--yip~-----~le~~  309 (1081)
T KOG0618|consen  246 LDISHNNLSNLPEWIGACANLEALNANHNRL-V----ALPLRIS---RITSLV-SLSAAYNELE--YIPP-----FLEGL  309 (1081)
T ss_pred             eecchhhhhcchHHHHhcccceEecccchhH-H----hhHHHHh---hhhhHH-HHHhhhhhhh--hCCC-----ccccc
Confidence            76665443    5667788888887754322 2    3333334   577788 5555445554  6776     55678


Q ss_pred             ccceeeEEE
Q 009416          400 TSVKKLNYS  408 (535)
Q Consensus       400 ~~L~~L~l~  408 (535)
                      .+|++|+|.
T Consensus       310 ~sL~tLdL~  318 (1081)
T KOG0618|consen  310 KSLRTLDLQ  318 (1081)
T ss_pred             ceeeeeeeh
Confidence            899999986

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.59  E-value=2.9e-09  Score=112.01  Aligned_cols=234  Identities=17%  Similarity=0.174  Sum_probs=133.6

Q ss_pred             CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee-eeCCCCCccEEEEee
Q 009416          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVNLSNLKEIILVN  217 (535)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-~~~~l~~L~~L~l~~  217 (535)
                      ++|+.|...+|.+........-.+|++++++.+.+.  .++.++..|++|+.+.+..|....-. .+....+|+.|.+..
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~--~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS--NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhhh--cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence            555555555555532222223356788888877763  34467788888888888777652111 233334555555555


Q ss_pred             c--CCccEEeecCCcccEEEEeeecccCeEE------------------------ec--CcccccceeEeeccCCChHHH
Q 009416          218 T--SDIKRVEIKTSNVNALAIHQTYLFPIEV------------------------NV--SSCGNLKCLKFDFLPIEDEWL  269 (535)
Q Consensus       218 c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~------------------------~~--~~l~~L~~L~L~~~~~~~~~l  269 (535)
                      |  ..+........+|++|++..+.....+.                        ..  ...+.|+.|++.+|.+++..+
T Consensus       297 nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~  376 (1081)
T KOG0618|consen  297 NELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF  376 (1081)
T ss_pred             hhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch
Confidence            5  2222222234455555555443111111                        11  124456666667777776666


Q ss_pred             HHhcCCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch----hhcccCcccceeEE
Q 009416          270 CNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFSSNALSLSETSL  345 (535)
Q Consensus       270 ~~l~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~----~~~~~l~~L~~L~l  345 (535)
                      +- +.++++|+.|+|+... ++.+|..+       +          ...+.|+.|.++|+..    ..+.+++.|+.|..
T Consensus       377 p~-l~~~~hLKVLhLsyNr-L~~fpas~-------~----------~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  377 PV-LVNFKHLKVLHLSYNR-LNSFPASK-------L----------RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             hh-hccccceeeeeecccc-cccCCHHH-------H----------hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence            55 5667777777777632 33333211       0          0112233444455443    35567777888766


Q ss_pred             EEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEE
Q 009416          346 CFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSV  409 (535)
Q Consensus       346 ~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~  409 (535)
                      ..+...     .+|++.+    +++|+ .++++||+++...+|+     ..|. ++|++|+++.
T Consensus       438 hsN~l~-----~fPe~~~----l~qL~-~lDlS~N~L~~~~l~~-----~~p~-p~LkyLdlSG  485 (1081)
T KOG0618|consen  438 HSNQLL-----SFPELAQ----LPQLK-VLDLSCNNLSEVTLPE-----ALPS-PNLKYLDLSG  485 (1081)
T ss_pred             cCCcee-----echhhhh----cCcce-EEecccchhhhhhhhh-----hCCC-cccceeeccC
Confidence            443222     3466665    99999 9999999999778887     6664 6999999984

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.57  E-value=6.4e-08  Score=104.86  Aligned_cols=246  Identities=14%  Similarity=0.074  Sum_probs=144.4

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .+...|.+....  ...+|..+.  ++|+.|+|++|.+...+. ..+++|++|++++|.++.  ++..+  .++|+.|+|
T Consensus       178 ~~~~~L~L~~~~--LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILG--LTTIPACIP--EQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTS--IPATL--PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCC--cCcCCcccc--cCCcEEEecCCCCCcCCh-hhccCCCEEECCCCcccc--CChhh--hccccEEEC
Confidence            456777776543  346776553  679999999998853322 224689999999987742  22212  357899999


Q ss_pred             eecCCCceeeeCCCCCccEEEEeecCCccEEee-cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHh
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG  272 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l  272 (535)
                      ++|... .+...-.++|+.|++++| .+..++. -.++|+.|++++|.-..++..+  .++|+.|++++|.++.- +.. 
T Consensus       249 s~N~L~-~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~L-P~~-  322 (754)
T PRK15370        249 SINRIT-ELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTAL-PET-  322 (754)
T ss_pred             cCCccC-cCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccc--hhhHHHHHhcCCccccC-Ccc-
Confidence            888643 332111257888988865 3443432 2357889988887622222222  24678888887776531 111 


Q ss_pred             cCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccccccc-cCCceeeEEEcCcchhhc-cc-CcccceeEEEEe
Q 009416          273 ISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLISFS-SN-ALSLSETSLCFS  348 (535)
Q Consensus       273 ~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~~-~~p~L~~L~~~g~~~~~~-~~-l~~L~~L~l~~~  348 (535)
                        ..++|+.|.+.+|. ++.++. .+++|+.|+++++. +..+.. -.++|+.|.++++....+ .+ .++|+.|+++.+
T Consensus       323 --l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N  398 (754)
T PRK15370        323 --LPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNALTNLPENLPAALQIMQASRN  398 (754)
T ss_pred             --ccccceeccccCCc-cccCChhhcCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcCCCCCHhHHHHHHHHhhccC
Confidence              13578888887764 344443 23578888887763 333332 125778888877654111 11 135777777665


Q ss_pred             cccchhhHhHHHHHhhhhcccccceeEEEEeeccc
Q 009416          349 SHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGE  383 (535)
Q Consensus       349 ~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~  383 (535)
                      ..... ...++.+..   .++++. .|.+..|.+.
T Consensus       399 ~L~~L-P~sl~~~~~---~~~~l~-~L~L~~Npls  428 (754)
T PRK15370        399 NLVRL-PESLPHFRG---EGPQPT-RIIVEYNPFS  428 (754)
T ss_pred             CcccC-chhHHHHhh---cCCCcc-EEEeeCCCcc
Confidence            32220 113455555   567777 6766655544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.51  E-value=3e-07  Score=99.72  Aligned_cols=244  Identities=14%  Similarity=0.086  Sum_probs=119.5

Q ss_pred             CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeec
Q 009416          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (535)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c  218 (535)
                      .+.+.|+++++.+...|.. -.++|+.|+|++|.++.  ++..+  +++|+.|++++|. +..+...-.++|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKS--LPENL--QGNIKTLYANSNQ-LTSIPATLPDTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCc-cccCChhhhccccEEECcCC
Confidence            4456677777665322211 12467777777776632  22111  2467777777664 33332111246777777776


Q ss_pred             CCccEEee-cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc-C
Q 009416          219 SDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-S  296 (535)
Q Consensus       219 ~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-~  296 (535)
                      . +..++. -..+|+.|+++++....++..+  .++|+.|++++|.++.. +..+   .++|+.|++.++. +..++. .
T Consensus       252 ~-L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l---p~sL~~L~Ls~N~-Lt~LP~~l  323 (754)
T PRK15370        252 R-ITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRTL-PAHL---PSGITHLNVQSNS-LTALPETL  323 (754)
T ss_pred             c-cCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCCccccC-cccc---hhhHHHHHhcCCc-cccCCccc
Confidence            2 222221 1236777777766522233222  24677777777665531 1110   1356667776643 333433 2


Q ss_pred             CCCCceEEeccCccccccccc-CCceeeEEEcCcchh--hcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccce
Q 009416          297 SPCLKTLILECCDKLIQVEIE-TPNLSIFKYHGDLIS--FSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSK  373 (535)
Q Consensus       297 ~~~L~~L~l~~c~~L~~l~~~-~p~L~~L~~~g~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~  373 (535)
                      .++|+.|.+.+|. +..+... .++|+.|.++++...  ...-.++|+.|+|+.+....     ++..+.     .+|+ 
T Consensus       324 ~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~-----LP~~l~-----~sL~-  391 (754)
T PRK15370        324 PPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN-----LPENLP-----AALQ-  391 (754)
T ss_pred             cccceeccccCCc-cccCChhhcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCC-----CCHhHH-----HHHH-
Confidence            3467777776653 3333321 246777777766541  11112457777775542221     222221     2455 


Q ss_pred             eEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416          374 VLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT  411 (535)
Q Consensus       374 ~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~  411 (535)
                      .|.++.|.+.  .+|+.+.. ....++++..|++...+
T Consensus       392 ~LdLs~N~L~--~LP~sl~~-~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        392 IMQASRNNLV--RLPESLPH-FRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HHhhccCCcc--cCchhHHH-HhhcCCCccEEEeeCCC
Confidence            5566655554  44541111 22233566666665443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=3.4e-08  Score=95.91  Aligned_cols=171  Identities=18%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC----CCcccCcccceeEeeeEee---ChhHHHHHHhCCCc
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA---DDQAIASLISGCPL  187 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~---~~~~l~~~~~~~p~  187 (535)
                      .|+++.|+++.......-.-...|++++.|+|++|-+..-    ....+||+|+.|+|+.|++   .+...   -..++.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---~~~l~~  198 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---TLLLSH  198 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc---hhhhhh
Confidence            5666666665433222212333466666666666543111    2234566666666666554   11111   113455


Q ss_pred             ccEEEEeecCCCc-ee--eeCCCCCccEEEEeecCCccEEee---cCCcccEEEEeeec--ccCeEEecCcccccceeEe
Q 009416          188 IEYLEIRSCEGLE-SL--DLVNLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKF  259 (535)
Q Consensus       188 Le~L~L~~c~~l~-~~--~~~~l~~L~~L~l~~c~~l~~~~~---~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L~L  259 (535)
                      |+.|.|+.|.... .+  ....+|+|+.|.+..+..+.....   -...|+.|+++++.  +.+.....+.++.|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            5566666654321 11  122345566665555532111111   23456666666665  2222234566777777777


Q ss_pred             eccCCChHHHHH-----hcCCCCCccEEEeecCC
Q 009416          260 DFLPIEDEWLCN-----GISKLPLLEYLSMTKCH  288 (535)
Q Consensus       260 ~~~~~~~~~l~~-----l~~~~~~L~~L~L~~c~  288 (535)
                      +.+.+..-....     ....+|+|+.|.+...+
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            766655422221     14567788888877644

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.37  E-value=5.2e-08  Score=92.15  Aligned_cols=164  Identities=17%  Similarity=0.168  Sum_probs=81.5

Q ss_pred             CceEEEEeccCCCCc---cCCccccCCCceeEEEEeCcccc-----CC-------CCcccCcccceeEeeeEeeC---hh
Q 009416          115 EVKELVLVHWRSERR---NLPEIIFYVESLHVLELSYCKLQ-----QP-------SENVKLFSLRKLALREVCAD---DQ  176 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~---~lp~~l~~~~~L~~L~L~~~~~~-----~~-------~~~~~l~~L~~L~L~~~~~~---~~  176 (535)
                      .+..++++.+.....   .+-..+.+-++|+..++++.-..     .+       +....+|.|++|+|++|.++   ..
T Consensus        31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~  110 (382)
T KOG1909|consen   31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR  110 (382)
T ss_pred             ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence            577777776543211   12223344567777777764211     11       22345677888888888773   34


Q ss_pred             HHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec--ccC---eEEec
Q 009416          177 AIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY--LFP---IEVNV  248 (535)
Q Consensus       177 ~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~--~~~---~~~~~  248 (535)
                      .+..++++|..|++|.|.+|..- ..   .++  ..|..|.      ........|.|+.+....|.  +.+   +...+
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~--~al~~l~------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNCGLG-PEAGGRLG--RALFELA------VNKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcCCCC-hhHHHHHH--HHHHHHH------HHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence            55566777888888888777431 11   000  0010000      00111133455555555554  111   11224


Q ss_pred             CcccccceeEeeccCCChH---HHHHhcCCCCCccEEEeecC
Q 009416          249 SSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       249 ~~l~~L~~L~L~~~~~~~~---~l~~l~~~~~~L~~L~L~~c  287 (535)
                      ...+.|+.+.+..|.+...   .+..-+..||+|+.|+|.+.
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN  223 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN  223 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc
Confidence            4456666666665555432   22233455666666666663

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.37  E-value=1.4e-07  Score=64.62  Aligned_cols=37  Identities=41%  Similarity=0.762  Sum_probs=31.1

Q ss_pred             CCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhcc
Q 009416           12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT   48 (535)
Q Consensus        12 is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~~   48 (535)
                      +++||+|++.+||++|+.+|+++++.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5689999999999999999999999999999987654

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.35  E-value=6.5e-09  Score=88.33  Aligned_cols=148  Identities=19%  Similarity=0.181  Sum_probs=86.2

Q ss_pred             ccCCCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCc-eeeeCCCCCccE
Q 009416          135 IFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE-SLDLVNLSNLKE  212 (535)
Q Consensus       135 l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~-~~~~~~l~~L~~  212 (535)
                      ++++.+++.|.|+++.+. .||.+..+.+|+.|++++|.+.  .++.-++.+|+|+.|++.-+.... .-.++++|.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence            455666666777776663 3366666777777777666653  233335666677766665443211 113445566666


Q ss_pred             EEEeec----CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeec
Q 009416          213 IILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (535)
Q Consensus       213 L~l~~c----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~  286 (535)
                      |+++++    ..+..-.+.+..|+.|.++++.-..++..++.+.+|+.|.+..+....  ++.-++.++.|+.|.+.+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence            666655    112222234556777777777655566777888888888877665432  122244566677777776

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.28  E-value=9e-07  Score=58.19  Aligned_cols=34  Identities=38%  Similarity=0.692  Sum_probs=31.6

Q ss_pred             CCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhcc
Q 009416           15 LPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT   48 (535)
Q Consensus        15 LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~~   48 (535)
                      ||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.21  E-value=4.5e-08  Score=93.88  Aligned_cols=279  Identities=15%  Similarity=0.132  Sum_probs=157.2

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc-CC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      +++-..++........+|..+-  +.-+.+.|..|.+. .| ..+..+++|++|+|++|.++.-... -+.+.+.|-.|.
T Consensus        45 ~~~g~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lv  121 (498)
T KOG4237|consen   45 DVEGGIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLV  121 (498)
T ss_pred             CCCCceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHH
Confidence            3333333333333344554331  45688888888773 33 5677899999999999887433322 256778888888


Q ss_pred             EeecCCCcee---eeCCCCCccEEEEeec--CCc-cEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416          193 IRSCEGLESL---DLVNLSNLKEIILVNT--SDI-KRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       193 L~~c~~l~~~---~~~~l~~L~~L~l~~c--~~l-~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~  265 (535)
                      +.++..++.+   .+.++.+|+.|.+..|  .-+ +.....+++|..|.+.++. .......+..+.+++.+++.-+.+.
T Consensus       122 lyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i  201 (498)
T KOG4237|consen  122 LYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI  201 (498)
T ss_pred             hhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence            8887677666   4666777777776655  111 1122266778888887776 2222346777888888887655522


Q ss_pred             hH----HHHH-------hcCCCCCccEEEeecCCCCccccc-CC-CCCceE---EeccC-ccc---ccccccCCceeeEE
Q 009416          266 DE----WLCN-------GISKLPLLEYLSMTKCHKLTSVRI-SS-PCLKTL---ILECC-DKL---IQVEIETPNLSIFK  325 (535)
Q Consensus       266 ~~----~l~~-------l~~~~~~L~~L~L~~c~~l~~l~~-~~-~~L~~L---~l~~c-~~L---~~l~~~~p~L~~L~  325 (535)
                      .+    +...       .++.+.......+.. .....+.. .+ -.++.+   -...| +..   ..-.-..|+|+.++
T Consensus       202 cdCnL~wla~~~a~~~ietsgarc~~p~rl~~-~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln  280 (498)
T KOG4237|consen  202 CDCNLPWLADDLAMNPIETSGARCVSPYRLYY-KRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN  280 (498)
T ss_pred             cccccchhhhHHhhchhhcccceecchHHHHH-HHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence            11    0000       011111111111111 00000000 00 011111   01111 000   01112457899999


Q ss_pred             EcCcch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcc
Q 009416          326 YHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLT  400 (535)
Q Consensus       326 ~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~  400 (535)
                      ++++..     -.|.++.++++|++..+....    .-...++   ++..|+ .|.++.|.++ ...|.     .+..+.
T Consensus       281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~----v~~~~f~---~ls~L~-tL~L~~N~it-~~~~~-----aF~~~~  346 (498)
T KOG4237|consen  281 LSNNKITRIEDGAFEGAAELQELYLTRNKLEF----VSSGMFQ---GLSGLK-TLSLYDNQIT-TVAPG-----AFQTLF  346 (498)
T ss_pred             cCCCccchhhhhhhcchhhhhhhhcCcchHHH----HHHHhhh---ccccce-eeeecCCeeE-EEecc-----cccccc
Confidence            988876     567888999999997653332    2244567   799999 8888877777 23333     566788


Q ss_pred             cceeeEEEEee
Q 009416          401 SVKKLNYSVRT  411 (535)
Q Consensus       401 ~L~~L~l~~~~  411 (535)
                      +|.+|.+-..|
T Consensus       347 ~l~~l~l~~Np  357 (498)
T KOG4237|consen  347 SLSTLNLLSNP  357 (498)
T ss_pred             eeeeeehccCc
Confidence            99999987544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.18  E-value=4.8e-09  Score=100.53  Aligned_cols=259  Identities=19%  Similarity=0.144  Sum_probs=148.4

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccc-cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .++.+.+..++  ...+-..+.++..|++|++.++.+ ..|+.++.+..++.|+.+.+++.  .++.-+...++|..|+.
T Consensus        46 ~l~~lils~N~--l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   46 DLQKLILSHND--LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             chhhhhhccCc--hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhc
Confidence            34444444432  334555567788899999999887 55688899999999999988763  23334566778888877


Q ss_pred             eecCCCcee-eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHh
Q 009416          194 RSCEGLESL-DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG  272 (535)
Q Consensus       194 ~~c~~l~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l  272 (535)
                      +++...+-. .++.                     +-.|+.++..++.....+..+.++.+|..+.+.++.+..-.... 
T Consensus       122 s~n~~~el~~~i~~---------------------~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~-  179 (565)
T KOG0472|consen  122 SSNELKELPDSIGR---------------------LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENH-  179 (565)
T ss_pred             cccceeecCchHHH---------------------HhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHH-
Confidence            776533211 2222                     22344444444443334556666777777777766654422222 


Q ss_pred             cCCCCCccEEEeecCCCCcccccCCCCCceEEeccCc--ccccccccCCceeeEEEcCcchhhcccCcccceeEEEEecc
Q 009416          273 ISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCD--KLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSH  350 (535)
Q Consensus       273 ~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~--~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~  350 (535)
                      + +...|++|+... +.++.+|.....+++|+.-+..  ++..+                 ..|+++..|++++++.+..
T Consensus       180 i-~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~l-----------------Pef~gcs~L~Elh~g~N~i  240 (565)
T KOG0472|consen  180 I-AMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFL-----------------PEFPGCSLLKELHVGENQI  240 (565)
T ss_pred             H-HHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccC-----------------CCCCccHHHHHHHhcccHH
Confidence            1 145566665543 2244455433333322221110  01111                 2455677788877755433


Q ss_pred             cchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccch
Q 009416          351 LMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSI  430 (535)
Q Consensus       351 ~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l  430 (535)
                      ..    ...+...   +++++. +|++..|.++  .+|.     .+-.+.+|.+|+++              +++. .++
T Consensus       241 ~~----lpae~~~---~L~~l~-vLDLRdNklk--e~Pd-----e~clLrsL~rLDlS--------------NN~i-s~L  290 (565)
T KOG0472|consen  241 EM----LPAEHLK---HLNSLL-VLDLRDNKLK--EVPD-----EICLLRSLERLDLS--------------NNDI-SSL  290 (565)
T ss_pred             Hh----hHHHHhc---ccccce-eeeccccccc--cCch-----HHHHhhhhhhhccc--------------CCcc-ccC
Confidence            33    2244555   788888 7888777777  7777     55567788888886              2333 333


Q ss_pred             hHHhhhhhccCcccceEEEeecC
Q 009416          431 ANVLDGLLWTSPHAEMVSIEHGH  453 (535)
Q Consensus       431 ~~l~~~ll~~~p~Le~L~l~~~~  453 (535)
                      +.    -+.+. +|+.|.++..|
T Consensus       291 p~----sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  291 PY----SLGNL-HLKFLALEGNP  308 (565)
T ss_pred             Cc----ccccc-eeeehhhcCCc
Confidence            33    34443 77788887666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.18  E-value=2.6e-07  Score=81.70  Aligned_cols=128  Identities=19%  Similarity=0.127  Sum_probs=38.2

Q ss_pred             CCCceeEEEEeCccccCCCCcc-cCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee-eeCCCCCccEEE
Q 009416          137 YVESLHVLELSYCKLQQPSENV-KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVNLSNLKEII  214 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-~~~~l~~L~~L~  214 (535)
                      ++.++++|+|+++.+......+ .+.+|+.|++++|.+..  +.. +..++.|++|++++|....-- .+.         
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~~i~~~l~---------   84 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRISSISEGLD---------   84 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHH---------
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCCccccchH---------
Confidence            4456778888888775544454 46778888888777632  221 345677777777776532110 111         


Q ss_pred             EeecCCccEEeecCCcccEEEEeeec--ccCeEEecCcccccceeEeeccCCChHH--HHHhcCCCCCccEEEeecC
Q 009416          215 LVNTSDIKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       215 l~~c~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L~L~~~~~~~~~--l~~l~~~~~~L~~L~L~~c  287 (535)
                                 ..+|+|+.|.++++.  ...-...+..+++|+.|++.+|+++...  -..++..+|+|+.|+-...
T Consensus        85 -----------~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   85 -----------KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -----------HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             -----------HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence                       023444444444443  1011123456677777777777665421  2223455777777776653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.13  E-value=2e-08  Score=85.40  Aligned_cols=148  Identities=18%  Similarity=0.226  Sum_probs=81.5

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccc-cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ++..|.++.+.  ...+|+.+..+.+|+.|+++++.+ ..|.++..++.|+.|++.-|+..  .++.-++++|.||.|++
T Consensus        34 ~ITrLtLSHNK--l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   34 NITRLTLSHNK--LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhcccCc--eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhc
Confidence            34445554432  335666666666777777777666 34466666677777766555431  22333566677777777


Q ss_pred             eecCCCcee---eeCCCCCccEEEEeec--CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCCh
Q 009416          194 RSCEGLESL---DLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED  266 (535)
Q Consensus       194 ~~c~~l~~~---~~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~  266 (535)
                      .++..-+..   .+..+..|+.|.++.+  ..+..-.-.+.+|+-|.+.++.....+..++.+..|+.|++.++..+.
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence            666543222   1122344555555444  111111123455555666665534456677788888888888776543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.11  E-value=1.7e-05  Score=87.76  Aligned_cols=146  Identities=21%  Similarity=0.226  Sum_probs=83.0

Q ss_pred             CceeEEEEeCccccCCCCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEEE
Q 009416          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIIL  215 (535)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l  215 (535)
                      ...+.+.+-++.+...+....++.|++|-+.++.. -.......+..+|.|+.|+|++|..+..+  .++.+-+|++|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            56667777766654334445556788887777641 11111223556788888888887777666  5666777888887


Q ss_pred             eecCCccEEee---cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCC--ChHHHHHhcCCCCCccEEEeec
Q 009416          216 VNTSDIKRVEI---KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPI--EDEWLCNGISKLPLLEYLSMTK  286 (535)
Q Consensus       216 ~~c~~l~~~~~---~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~--~~~~l~~l~~~~~~L~~L~L~~  286 (535)
                      +++ .+..++.   .+..|.+|++..+. ...++.....+++|++|.+.....  +...+.. +.++.+|+.|.+..
T Consensus       603 ~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  603 SDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITI  677 (889)
T ss_pred             cCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhheeec
Confidence            776 3334443   34455566665554 112223334477777777764432  2222233 35555666665544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.10  E-value=7.5e-07  Score=78.79  Aligned_cols=100  Identities=21%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             CceEEEEeccCCCCccCCcccc-CCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ++++|+|..+...  .+ ..++ .+.+|+.|+|++|.+.....+..++.|++|++++|.++.-. ..+...||+|++|.+
T Consensus        20 ~~~~L~L~~n~I~--~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQIS--TI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-
T ss_pred             ccccccccccccc--cc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEEC
Confidence            5777888765432  22 2354 46899999999999977677888999999999999984321 122346899999999


Q ss_pred             eecCCC--cee-eeCCCCCccEEEEeec
Q 009416          194 RSCEGL--ESL-DLVNLSNLKEIILVNT  218 (535)
Q Consensus       194 ~~c~~l--~~~-~~~~l~~L~~L~l~~c  218 (535)
                      ++|..-  ..+ .+..+++|+.|++.++
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCC
Confidence            988642  222 3344566666665554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.08  E-value=5.8e-07  Score=85.19  Aligned_cols=114  Identities=16%  Similarity=0.190  Sum_probs=67.4

Q ss_pred             cCCceeeEEEcCcch---------hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeecccc---
Q 009416          317 ETPNLSIFKYHGDLI---------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGEN---  384 (535)
Q Consensus       317 ~~p~L~~L~~~g~~~---------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~---  384 (535)
                      ..|+|+.+.+..++.         ..++..+.|+.+.+..+......+..+..-+.   +.++|+ +|.|..|.++.   
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~---~~~~Le-vLdl~DNtft~egs  230 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE---HCPHLE-VLDLRDNTFTLEGS  230 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH---hCCcce-eeecccchhhhHHH
Confidence            345666666555443         34566678888888655221101224455566   788888 88887665542   


Q ss_pred             ccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeec
Q 009416          385 VIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHG  452 (535)
Q Consensus       385 ~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~  452 (535)
                      .++..     .++.+++|+.|++..|-         +++.    |-..+...+-+..|+|+.|.+..+
T Consensus       231 ~~Lak-----aL~s~~~L~El~l~dcl---------l~~~----Ga~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  231 VALAK-----ALSSWPHLRELNLGDCL---------LENE----GAIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             HHHHH-----Hhcccchheeecccccc---------cccc----cHHHHHHHHhccCCCCceeccCcc
Confidence            11223     56677788888886443         2222    345566666677788888887643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.81  E-value=5.8e-06  Score=89.00  Aligned_cols=149  Identities=19%  Similarity=0.199  Sum_probs=92.8

Q ss_pred             CceeEEEEeCccccC---C-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEE
Q 009416          139 ESLHVLELSYCKLQQ---P-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (535)
Q Consensus       139 ~~L~~L~L~~~~~~~---~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~  214 (535)
                      .+|++|++++...-.   + .....||+|++|.+++..+....+..+..++|+|..|+++++..-.-..++.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            566666666643211   1 122357778888777777755556666777788888887777533223556666777776


Q ss_pred             EeecCCcc--EE-e-ecCCcccEEEEeeec--ccC-----eEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEE
Q 009416          215 LVNTSDIK--RV-E-IKTSNVNALAIHQTY--LFP-----IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS  283 (535)
Q Consensus       215 l~~c~~l~--~~-~-~~~~~L~~L~l~~~~--~~~-----~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~  283 (535)
                      +.+-.-..  .+ . +.+.+|+.|+++...  ..+     ....-..+|+|+.|+.+++.+..+.+..++..-|+|+...
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            65431111  00 0 256677777777654  111     0111234889999999999999998888888888888777


Q ss_pred             eecC
Q 009416          284 MTKC  287 (535)
Q Consensus       284 L~~c  287 (535)
                      .-+|
T Consensus       282 ~~~~  285 (699)
T KOG3665|consen  282 ALDC  285 (699)
T ss_pred             hhhh
Confidence            6653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.75  E-value=8.2e-06  Score=75.86  Aligned_cols=125  Identities=20%  Similarity=0.192  Sum_probs=75.4

Q ss_pred             CcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeec--CCccEEeecCCcccEEEEe
Q 009416          160 LFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIH  237 (535)
Q Consensus       160 l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~  237 (535)
                      .+.|++|+|++|.++  .+..-+.-.|.++.|++++|....--.+..+++|+.|+++++  ..+..+...+-++++|.+.
T Consensus       283 Wq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             Hhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            346777777777652  122223446777888877776543224555677888887776  3444444456677777777


Q ss_pred             eecccCeEEecCcccccceeEeeccCCCh-HHHHHhcCCCCCccEEEeecCC
Q 009416          238 QTYLFPIEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       238 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~l~~l~~~~~~L~~L~L~~c~  288 (535)
                      ++.... ...++.+-+|..|++++|.+.. +.... ++++|.|++|.+.+.+
T Consensus       361 ~N~iE~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  361 QNKIET-LSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhHhh-hhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC
Confidence            665111 1123344466777777777655 33344 6778888888777754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.67  E-value=1.2e-05  Score=89.01  Aligned_cols=174  Identities=20%  Similarity=0.237  Sum_probs=92.3

Q ss_pred             CceEEEEeccCCCCccCCccccC-CCceeEEEEeCccc--cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFY-VESLHVLELSYCKL--QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      .++.|-+.........++..++. ++.|++|||++|.-  ..|..++.+-+||+|+++++.+.  .++.-+.++..|.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYL  623 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhhee
Confidence            34454444332113345554444 68888888887643  45567788888888888888764  344446677788888


Q ss_pred             EEeecCCCcee-ee-CCCCCccEEEEeecC-CccEEe----ecCCcccEEEEeeecccCeEEecCcccccceeEeecc--
Q 009416          192 EIRSCEGLESL-DL-VNLSNLKEIILVNTS-DIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFL--  262 (535)
Q Consensus       192 ~L~~c~~l~~~-~~-~~l~~L~~L~l~~c~-~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~--  262 (535)
                      ++..+..+..+ .+ ..+++|++|.+..-. ......    ..+.+|+.+.+..... .+...+..+..|.++...-.  
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~  702 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIE  702 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhc
Confidence            88877665544 22 236788888776542 111111    1233444444432221 11112233333332211100  


Q ss_pred             CCChHHHHHhcCCCCCccEEEeecCCCCc
Q 009416          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLT  291 (535)
Q Consensus       263 ~~~~~~l~~l~~~~~~L~~L~L~~c~~l~  291 (535)
                      ..........+..+++|+.|.+.+|...+
T Consensus       703 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  703 GCSKRTLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             ccccceeecccccccCcceEEEEcCCCch
Confidence            01111122224567788888888887654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.58  E-value=7.3e-06  Score=79.06  Aligned_cols=250  Identities=13%  Similarity=0.110  Sum_probs=131.3

Q ss_pred             CCccEEeecC-CcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCcccccC
Q 009416          219 SDIKRVEIKT-SNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRIS  296 (535)
Q Consensus       219 ~~l~~~~~~~-~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~  296 (535)
                      .++.+++.++ +.-..+++..+....+ +..|+.+++|+.|+|+.|.++...+.. +.++++|-+|.+.+..+++.++..
T Consensus        56 ~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   56 KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             CCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh-hhhhHhhhHHHhhcCCchhhhhhh
Confidence            4555555543 3555666666662222 346778888888888888877665555 667777877877776667666651


Q ss_pred             -C---CCCceEEecc--Cccc-ccccccCCceeeEEEcCcch-----hhcccCcccceeEEEEec------c--------
Q 009416          297 -S---PCLKTLILEC--CDKL-IQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS------H--------  350 (535)
Q Consensus       297 -~---~~L~~L~l~~--c~~L-~~l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~------~--------  350 (535)
                       +   .+|+.|.+.-  |.-+ +...-+.++|..|.+.++..     -.++++.+++.+.+..++      .        
T Consensus       135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a  214 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA  214 (498)
T ss_pred             HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence             1   2333333321  1111 12222334444444443332     122333333333221100      0        


Q ss_pred             --------------------------------------------cchhhHhHHHHHhhhhcccccceeEEEEeecccccc
Q 009416          351 --------------------------------------------LMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVI  386 (535)
Q Consensus       351 --------------------------------------------~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~  386 (535)
                                                                  ...+..-....+.   .+++|+ +|.++.|.++  .
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~---~L~~L~-~lnlsnN~i~--~  288 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFK---KLPNLR-KLNLSNNKIT--R  288 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHh---hcccce-EeccCCCccc--h
Confidence                                                        0000001123345   677777 7777766555  2


Q ss_pred             ccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecCC-----Ccceeee
Q 009416          387 VPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHL-----HKFSFQI  461 (535)
Q Consensus       387 ~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~~-----~~~~~~~  461 (535)
                      +.+.    ++.....++.|+|..                  .+++.+-..+|+....|++|++..+..     -.|.. .
T Consensus       289 i~~~----aFe~~a~l~eL~L~~------------------N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~-~  345 (498)
T KOG4237|consen  289 IEDG----AFEGAAELQELYLTR------------------NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT-L  345 (498)
T ss_pred             hhhh----hhcchhhhhhhhcCc------------------chHHHHHHHhhhccccceeeeecCCeeEEEecccccc-c
Confidence            3221    444566777777752                  467778888899889999999985441     22210 0


Q ss_pred             hhhhhhhhcCCCCcc-ccCCCcccccccccceeeeeec
Q 009416          462 SYKKQLIYDGEIPRC-CQSLPVSCWQHCINEVKVEHTK  498 (535)
Q Consensus       462 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~lk~v~i~~~~  498 (535)
                      ..-.++....++.+| |...+...|...-..+....++
T Consensus       346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq  383 (498)
T KOG4237|consen  346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ  383 (498)
T ss_pred             ceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC
Confidence            011113334466677 8888877776544444444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=2.4e-05  Score=72.80  Aligned_cols=179  Identities=18%  Similarity=0.145  Sum_probs=122.7

Q ss_pred             hcCceEEEEeccCCC-CccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416          113 ESEVKELVLVHWRSE-RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le  189 (535)
                      ...+++++|..+... ...+-..+.++|.|+.|+|+.|.+..+  .......+|++|.|.+..++-......+...|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            457888988764321 223444456789999999999988654  12246679999999999886667777788999999


Q ss_pred             EEEEeecCC----CceeeeCC-CCCccEEEEeecC-----CccEEeecCCcccEEEEeeec--ccCeEEecCccccccee
Q 009416          190 YLEIRSCEG----LESLDLVN-LSNLKEIILVNTS-----DIKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCL  257 (535)
Q Consensus       190 ~L~L~~c~~----l~~~~~~~-l~~L~~L~l~~c~-----~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L  257 (535)
                      +|.++.|..    +..-.+.. .+.+++|....|.     ....+....|++.++.+..+.  +.........+|.+-.|
T Consensus       150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            999988832    11112221 2578888888882     222333457889988888775  22223345567777888


Q ss_pred             EeeccCCChHHHHHhcCCCCCccEEEeecCCCCc
Q 009416          258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT  291 (535)
Q Consensus       258 ~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~  291 (535)
                      .|+.+.+..-+...-+.++|.|..|.+.+.+-..
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            8888877654444447889999999998865443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.45  E-value=6.7e-05  Score=69.95  Aligned_cols=44  Identities=16%  Similarity=0.055  Sum_probs=29.2

Q ss_pred             cCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416          242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       242 ~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      ++....+...+.|+.++|++|.++...  +-..-.|.++.|+++..
T Consensus       274 G~~~~~~dTWq~LtelDLS~N~I~~iD--ESvKL~Pkir~L~lS~N  317 (490)
T KOG1259|consen  274 GSALVSADTWQELTELDLSGNLITQID--ESVKLAPKLRRLILSQN  317 (490)
T ss_pred             CceEEecchHhhhhhccccccchhhhh--hhhhhccceeEEecccc
Confidence            444555666778889999888775421  11234688888888874

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.44  E-value=1.8e-05  Score=83.22  Aligned_cols=125  Identities=22%  Similarity=0.296  Sum_probs=84.4

Q ss_pred             hcCceEEEEeccCC-CCccCCccccCCCceeEEEEeCc-ccc--CC----CCcccCcccceeEeeeEe-eChhHHHHHHh
Q 009416          113 ESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYC-KLQ--QP----SENVKLFSLRKLALREVC-ADDQAIASLIS  183 (535)
Q Consensus       113 ~~~l~~L~L~~~~~-~~~~lp~~l~~~~~L~~L~L~~~-~~~--~~----~~~~~l~~L~~L~L~~~~-~~~~~l~~~~~  183 (535)
                      .++++++.+..+.. ....+-.....+++|+.|++++| ...  .+    .....+++|+.|+++.+. +++..+..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            46888888876532 21123344567899999999873 221  11    233467899999999887 68888888888


Q ss_pred             CCCcccEEEEeecCCCceee----eCCCCCccEEEEeecCCccE-----EeecCCcccEEEEe
Q 009416          184 GCPLIEYLEIRSCEGLESLD----LVNLSNLKEIILVNTSDIKR-----VEIKTSNVNALAIH  237 (535)
Q Consensus       184 ~~p~Le~L~L~~c~~l~~~~----~~~l~~L~~L~l~~c~~l~~-----~~~~~~~L~~L~l~  237 (535)
                      .||+|++|.+..|..+....    ...+++|+.|++++|..+..     +...+++|+.|.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            89999999988888654332    23468899999999955422     22256666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=5.1e-05  Score=70.70  Aligned_cols=59  Identities=15%  Similarity=0.205  Sum_probs=35.9

Q ss_pred             CceeEEEEeCccccCC----CCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecC
Q 009416          139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCE  197 (535)
Q Consensus       139 ~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~  197 (535)
                      ..+..|.+.+|.+...    ......+.++.|+|.+|.+ .-..+..++..+|.|+.|+|+.|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~  108 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS  108 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence            3444566666665433    1113456777777777777 334566667777777777776664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.27  E-value=9.7e-05  Score=53.25  Aligned_cols=58  Identities=26%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             CceeEEEEeCcccc-CC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecC
Q 009416          139 ESLHVLELSYCKLQ-QP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE  197 (535)
Q Consensus       139 ~~L~~L~L~~~~~~-~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~  197 (535)
                      |+|++|++++|.+. .+ ..+..+++|++|++++|.+..- .+..+.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence            45667777776653 22 3455667777777776665321 11235666777777776664

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.18  E-value=3.9e-05  Score=80.68  Aligned_cols=124  Identities=22%  Similarity=0.272  Sum_probs=85.2

Q ss_pred             CCCceeEEEEeCccccCC----CCcccCcccceeEeeeE-ee---ChhHHHHHHhCCCcccEEEEeecCCCceeeeC---
Q 009416          137 YVESLHVLELSYCKLQQP----SENVKLFSLRKLALREV-CA---DDQAIASLISGCPLIEYLEIRSCEGLESLDLV---  205 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~-~~---~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~---  205 (535)
                      .++.|+.|.+..|.....    +....+++|+.|+++++ ..   .......+...|++|+.|++.+|..+....+.   
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            379999999999854221    45567999999999873 21   22223345678999999999999876554322   


Q ss_pred             -CCCCccEEEEeecCCccEEe-----ecCCcccEEEEeeecc---cCeEEecCcccccceeEee
Q 009416          206 -NLSNLKEIILVNTSDIKRVE-----IKTSNVNALAIHQTYL---FPIEVNVSSCGNLKCLKFD  260 (535)
Q Consensus       206 -~l~~L~~L~l~~c~~l~~~~-----~~~~~L~~L~l~~~~~---~~~~~~~~~l~~L~~L~L~  260 (535)
                       .+++|+.|.+.+|..+....     -.+++|++|++.++..   ........++++|+.|.+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence             27899999998896543333     3789999999998872   1122224557777776554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.15  E-value=6.5e-05  Score=78.05  Aligned_cols=203  Identities=17%  Similarity=0.147  Sum_probs=104.2

Q ss_pred             cCCCCCceeEEEEEEecCCCCCChhhHHHHH-HHHHhcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCC
Q 009416           78 RQRKMISIKKFSLELDLINSPENASLAGRCL-GLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSE  156 (535)
Q Consensus        78 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~wl-~~~~~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~  156 (535)
                      ....+++++.|+......   .+...+...- -.-+.+..+.+.+-........=|-.++.+.+|++|.|++|.+.....
T Consensus        50 lg~~g~~~~~f~a~~s~~---ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~G  126 (1096)
T KOG1859|consen   50 LGLSGAPVDYFRAYVSDN---ADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKG  126 (1096)
T ss_pred             hccCCCCCceeEEecCCc---ccchHHHHHHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhh
Confidence            345567888888765432   2222222211 112234566666655332222227788899999999999997743311


Q ss_pred             cccC-ccccee--------------------------------EeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceee
Q 009416          157 NVKL-FSLRKL--------------------------------ALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD  203 (535)
Q Consensus       157 ~~~l-~~L~~L--------------------------------~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~  203 (535)
                      +..+ ..|++|                                +.+.|.+  ..+..-+.-.|.||.|+|+.|...+--.
T Consensus       127 L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~  204 (1096)
T KOG1859|consen  127 LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDN  204 (1096)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHH
Confidence            1111 011111                                1111211  0011112234667777777765433224


Q ss_pred             eCCCCCccEEEEeec--CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccE
Q 009416          204 LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY  281 (535)
Q Consensus       204 ~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~  281 (535)
                      +..++.|++|+++.+  ..+..+......|..|.+.+|.... ...+.++.+|+.|++++|-+.+..--..+..+..|+.
T Consensus       205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~  283 (1096)
T KOG1859|consen  205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV  283 (1096)
T ss_pred             HHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence            445677777777665  3333333322236777777666111 2345667777777777776665433333444556666


Q ss_pred             EEeec
Q 009416          282 LSMTK  286 (535)
Q Consensus       282 L~L~~  286 (535)
                      |.|.|
T Consensus       284 L~LeG  288 (1096)
T KOG1859|consen  284 LWLEG  288 (1096)
T ss_pred             HhhcC
Confidence            66666

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.12  E-value=0.00081  Score=67.18  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=17.0

Q ss_pred             CccEEEeecCCCCccccc-CCCCCceEEeccCcccc
Q 009416          278 LLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLI  312 (535)
Q Consensus       278 ~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~  312 (535)
                      +|+.|.+.+|..++.++. .+.+|++|.+.+|.++.
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~  108 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS  108 (426)
T ss_pred             CCcEEEccCCCCcccCCchhhhhhhheEccCccccc
Confidence            355555555555544443 22345555555554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.09  E-value=0.0002  Score=77.31  Aligned_cols=132  Identities=18%  Similarity=0.123  Sum_probs=88.9

Q ss_pred             HHHHHHHhcCceEEEEeccCCCCccCCccccC-CCceeEEEEeCccccCC---CCcccCcccceeEeeeEeeChhHHHHH
Q 009416          106 RCLGLAIESEVKELVLVHWRSERRNLPEIIFY-VESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASL  181 (535)
Q Consensus       106 ~wl~~~~~~~l~~L~L~~~~~~~~~lp~~l~~-~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~~  181 (535)
                      ..+....+.++++|++.....-...-|..++. +|+|++|.+++-.+...   ....+||+|..||++++.++.-   ..
T Consensus       114 ~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~G  190 (699)
T KOG3665|consen  114 DLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SG  190 (699)
T ss_pred             HHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HH
Confidence            33444556789999987744333344444554 59999999988666332   3346789999999999887432   33


Q ss_pred             HhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEeecCCccEE---------eecCCcccEEEEeeec
Q 009416          182 ISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRV---------EIKTSNVNALAIHQTY  240 (535)
Q Consensus       182 ~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~---------~~~~~~L~~L~l~~~~  240 (535)
                      ++.+++||.|.+.+-.....-   .+.++.+|+.|+++.-......         ...+|+|+.|+.+|..
T Consensus       191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            678888988888776654322   5667889999999876322211         1257899999988776

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.93  E-value=0.0003  Score=50.67  Aligned_cols=58  Identities=24%  Similarity=0.303  Sum_probs=32.8

Q ss_pred             CcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416          229 SNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       229 ~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      |+|+.|++.++.-..+ ...+.++++|++|+++++.+..-. ...+.++++|+.|+++++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence            3455555555541111 234566777777777766665332 223667777777777764

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.88  E-value=0.0037  Score=62.60  Aligned_cols=134  Identities=16%  Similarity=0.256  Sum_probs=63.2

Q ss_pred             cCcccceeEeeeEeeChhHHHHHHhCCC-cccEEEEeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEe
Q 009416          159 KLFSLRKLALREVCADDQAIASLISGCP-LIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH  237 (535)
Q Consensus       159 ~l~~L~~L~L~~~~~~~~~l~~~~~~~p-~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~  237 (535)
                      .+++++.|++++|.+..  ++    .+| +|++|.+++|..+..+.-.-.++|++|.+++|..+..++   ++|+.|.+.
T Consensus        50 ~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~  120 (426)
T PRK15386         50 EARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIK  120 (426)
T ss_pred             HhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeC
Confidence            35667777776664421  11    122 477777776666544321112467777777665554332   356666654


Q ss_pred             eecccCeEEecCccc-ccceeEeeccCCChHHHHHhcCCC-CCccEEEeecCCCCcccccCCCCCceEEecc
Q 009416          238 QTYLFPIEVNVSSCG-NLKCLKFDFLPIEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRISSPCLKTLILEC  307 (535)
Q Consensus       238 ~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~l~~~~-~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~  307 (535)
                      ++..    ..+..+| +|+.|.+.+.....  ...+...+ ++|+.|.+.+|.........+.+|+.|.++.
T Consensus       121 ~n~~----~~L~~LPssLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        121 GSAT----DSIKNVPNGLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI  186 (426)
T ss_pred             CCCC----cccccCcchHhheecccccccc--ccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence            3331    1123332 45555553221100  00000112 3677777776664431111234666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.86  E-value=0.00052  Score=70.25  Aligned_cols=165  Identities=22%  Similarity=0.242  Sum_probs=84.9

Q ss_pred             CCCceeEEEEeCccccCC-CCcccCc-ccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeC-CCCCccEE
Q 009416          137 YVESLHVLELSYCKLQQP-SENVKLF-SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLKEI  213 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~-~~~~~l~-~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~-~l~~L~~L  213 (535)
                      ..+.++.|++.++.+... +....+. +|+.|+++++.+..  ++.-+..+|.|+.|++.+|....--... ..+.|+.|
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            335667777777666332 3334442 67777777666532  2122456677777777766543222221 44666667


Q ss_pred             EEeecCCccEEee---cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCC
Q 009416          214 ILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL  290 (535)
Q Consensus       214 ~l~~c~~l~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l  290 (535)
                      .++++ .+..++.   ....|+++.+.++........+..+.++..+.+..+.+...  ...+..+++++.|++.++.. 
T Consensus       192 ~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i-  267 (394)
T COG4886         192 DLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQI-  267 (394)
T ss_pred             eccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceeccccccc-
Confidence            66665 2222222   22336677776663222234455566666666555544331  22245566677777776432 


Q ss_pred             ccccc--CCCCCceEEecc
Q 009416          291 TSVRI--SSPCLKTLILEC  307 (535)
Q Consensus       291 ~~l~~--~~~~L~~L~l~~  307 (535)
                      ..++.  ...+++.|++++
T Consensus       268 ~~i~~~~~~~~l~~L~~s~  286 (394)
T COG4886         268 SSISSLGSLTNLRELDLSG  286 (394)
T ss_pred             cccccccccCccCEEeccC
Confidence            22221  224555555543

>PLN03150 hypothetical protein; Provisional

Probab=96.69  E-value=0.0019  Score=69.92  Aligned_cols=100  Identities=19%  Similarity=0.171  Sum_probs=70.7

Q ss_pred             ceeEEEEeCcccc--CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEEE
Q 009416          140 SLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIIL  215 (535)
Q Consensus       140 ~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l  215 (535)
                      .++.|+|+++.+.  .+..+..+++|+.|+|++|.+.+ .++..++.+++|+.|+|++|...+.+  .+..+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            3788999998873  34667889999999999988753 23444778999999999998765544  4667889999999


Q ss_pred             eecCCccEEee----cCCcccEEEEeeec
Q 009416          216 VNTSDIKRVEI----KTSNVNALAIHQTY  240 (535)
Q Consensus       216 ~~c~~l~~~~~----~~~~L~~L~l~~~~  240 (535)
                      ++|.--..++.    ...++..+.+.++.
T Consensus       498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccccCChHHhhccccCceEEecCCc
Confidence            88832222221    12345567776665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.67  E-value=0.00045  Score=70.68  Aligned_cols=169  Identities=22%  Similarity=0.217  Sum_probs=118.8

Q ss_pred             cCceEEEEeccCCCCccCCccccCCC-ceeEEEEeCccccCC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVE-SLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      ..+..+.+....  ...+|......+ +|+.|+++++.+... .....+++|+.|+++.|.+.+  +.......+.|+.|
T Consensus       116 ~~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhe
Confidence            357777776543  457888777774 999999999988654 578899999999999998743  33334478999999


Q ss_pred             EEeecCCCceeee--CCCCCccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChH
Q 009416          192 EIRSCEGLESLDL--VNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE  267 (535)
Q Consensus       192 ~L~~c~~l~~~~~--~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~  267 (535)
                      +++++.. ..+..  .....|++|.+.++.......  ....++..+.+.++........++.+++++.|+++++.++..
T Consensus       192 ~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         192 DLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             eccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence            9999864 33322  233458888888874332222  255666666665555322245677888899999998887764


Q ss_pred             HHHHhcCCCCCccEEEeecCCCC
Q 009416          268 WLCNGISKLPLLEYLSMTKCHKL  290 (535)
Q Consensus       268 ~l~~l~~~~~~L~~L~L~~c~~l  290 (535)
                      ..   +....+|+.|++++....
T Consensus       271 ~~---~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         271 SS---LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cc---ccccCccCEEeccCcccc
Confidence            33   567889999999885433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.54  E-value=0.00059  Score=62.88  Aligned_cols=104  Identities=26%  Similarity=0.258  Sum_probs=70.1

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .++.+.++.+......+....-....|+.|++.++.++....+-.+|+|++|.++.|.. ....+..++..||+|++|++
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l   98 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL   98 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence            45556666654444445554445678888888888887666777889999999999944 22334445667899999999


Q ss_pred             eecCCC--cee-eeCCCCCccEEEEeec
Q 009416          194 RSCEGL--ESL-DLVNLSNLKEIILVNT  218 (535)
Q Consensus       194 ~~c~~l--~~~-~~~~l~~L~~L~l~~c  218 (535)
                      +.|..-  ..+ .+..+.+|..|++.+|
T Consensus        99 s~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   99 SGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             cCCccccccccchhhhhcchhhhhcccC
Confidence            998642  222 2334566666666666

>PLN03150 hypothetical protein; Provisional

Probab=96.44  E-value=0.0026  Score=68.81  Aligned_cols=100  Identities=11%  Similarity=0.050  Sum_probs=67.2

Q ss_pred             ccEEEEeecCCccEEe---ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEee
Q 009416          210 LKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT  285 (535)
Q Consensus       210 L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~  285 (535)
                      ++.|++.++.--..++   ..+++|+.|+++++. .+.++..++.+++|+.|+|++|.+++..+.. +.++++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence            6667776662111111   256788888888887 5566667888899999999988888766555 6788899999998


Q ss_pred             cCCCCcccccCC----CCCceEEeccCcc
Q 009416          286 KCHKLTSVRISS----PCLKTLILECCDK  310 (535)
Q Consensus       286 ~c~~l~~l~~~~----~~L~~L~l~~c~~  310 (535)
                      ++...+.+|...    .++..+.+.+.+.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            876555555422    2344555554433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.37  E-value=0.0019  Score=42.81  Aligned_cols=34  Identities=24%  Similarity=0.204  Sum_probs=15.7

Q ss_pred             ceeEEEEeCccccCCCC-cccCcccceeEeeeEee
Q 009416          140 SLHVLELSYCKLQQPSE-NVKLFSLRKLALREVCA  173 (535)
Q Consensus       140 ~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~  173 (535)
                      +|++|++++|.+...+. +.++++|+.|++++|.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            45555555555532222 45555555555555544

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.00029  Score=65.19  Aligned_cols=96  Identities=22%  Similarity=0.186  Sum_probs=72.1

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L  193 (535)
                      +++.|+..+|+.....+   ...++.|++|.|+-|.+.....+..|+.|+.|.|..|.+ +...+.. +.+.|+|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHHH---HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhh
Confidence            66777776665443322   346799999999999997778889999999999999998 4444544 689999999999


Q ss_pred             eecCCCcee-------eeCCCCCccEEE
Q 009416          194 RSCEGLESL-------DLVNLSNLKEII  214 (535)
Q Consensus       194 ~~c~~l~~~-------~~~~l~~L~~L~  214 (535)
                      ..|+..+.-       .+..+|+|+.|+
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            998875432       344567777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.96  E-value=0.0011  Score=61.02  Aligned_cols=38  Identities=29%  Similarity=0.362  Sum_probs=16.4

Q ss_pred             cccccceeEeeccCCCh-HHHHHhcCCCCCccEEEeecCC
Q 009416          250 SCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       250 ~l~~L~~L~L~~~~~~~-~~l~~l~~~~~~L~~L~L~~c~  288 (535)
                      .+|+|++|.+++|.+.. ..+.. +..+.+|..|++.+|.
T Consensus        89 ~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCS  127 (260)
T ss_pred             hCCceeEEeecCCccccccccch-hhhhcchhhhhcccCC
Confidence            33444444444444432 11111 2344555555555553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.87  E-value=0.019  Score=51.11  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=15.8

Q ss_pred             ceeEEEEeCccccCCCCcccCcccceeEeeeEee
Q 009416          140 SLHVLELSYCKLQQPSENVKLFSLRKLALREVCA  173 (535)
Q Consensus       140 ~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~  173 (535)
                      +...++|++|.+.....+..++.|.+|.+.+|.+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI   76 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI   76 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcc
Confidence            3444455555443323334445555555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.85  E-value=0.013  Score=52.02  Aligned_cols=99  Identities=19%  Similarity=0.255  Sum_probs=64.4

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC-CCc-ccCcccceeEeeeEee-ChhHHHHHHhCCCcccEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SEN-VKLFSLRKLALREVCA-DDQAIASLISGCPLIEYL  191 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~~~-~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L  191 (535)
                      ....++|+.+..  ..++ .+...+.|..|.|++|++... +.+ ..+|+|+.|.|.+|++ .-+.+.. +..||.|++|
T Consensus        43 ~~d~iDLtdNdl--~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDL--RKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYL  118 (233)
T ss_pred             ccceecccccch--hhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCcccee
Confidence            344555554332  2222 234679999999999988433 444 4578999999999988 4444554 5689999999


Q ss_pred             EEeecCCCc-----eeeeCCCCCccEEEEee
Q 009416          192 EIRSCEGLE-----SLDLVNLSNLKEIILVN  217 (535)
Q Consensus       192 ~L~~c~~l~-----~~~~~~l~~L~~L~l~~  217 (535)
                      .+-+|+.-.     ...+..+|+|+.|++.+
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            999887532     22344455666655543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.42  E-value=0.0053  Score=56.91  Aligned_cols=124  Identities=16%  Similarity=0.096  Sum_probs=59.9

Q ss_pred             cccCcccceeEeeeEeeC---hhHHHHHHhCCCcccEEEEeecCCCceeeeCCC-CCccEEEEeecCCccEEeecCCccc
Q 009416          157 NVKLFSLRKLALREVCAD---DQAIASLISGCPLIEYLEIRSCEGLESLDLVNL-SNLKEIILVNTSDIKRVEIKTSNVN  232 (535)
Q Consensus       157 ~~~l~~L~~L~L~~~~~~---~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~L~  232 (535)
                      ...||.|++.+|+.|.++   .+.+..+++.-+.|++|.+.+|. ++.+.-... ..|.+|      ....-..+.|.|+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~l------a~nKKaa~kp~Le  160 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHL------AYNKKAADKPKLE  160 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHH------HHHhhhccCCCce
Confidence            345566666666666552   23344445555666666665553 222110000 001000      0001112456777


Q ss_pred             EEEEeeec--ccCe---EEecCcccccceeEeeccCCChHHHHHh----cCCCCCccEEEeecC
Q 009416          233 ALAIHQTY--LFPI---EVNVSSCGNLKCLKFDFLPIEDEWLCNG----ISKLPLLEYLSMTKC  287 (535)
Q Consensus       233 ~L~l~~~~--~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~l----~~~~~~L~~L~L~~c  287 (535)
                      +.....+.  .++.   ...+.+-.+|+.+.+..|.+.......+    +..+.+|+.|+|.+.
T Consensus       161 ~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN  224 (388)
T COG5238         161 VVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN  224 (388)
T ss_pred             EEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence            77776665  2221   1123333578888888777766532221    235667777777763

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.26  E-value=0.0095  Score=56.58  Aligned_cols=37  Identities=38%  Similarity=0.595  Sum_probs=35.1

Q ss_pred             CCcCCCCC----HHHHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416            9 VDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQV   45 (535)
Q Consensus         9 ~D~is~LP----deiL~~Ils~L~~~d~~r~s~vskrWr~l   45 (535)
                      .|.|+.||    ++|...||+||+..+++.|-.|||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            58999999    99999999999999999999999999964

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=94.81  E-value=0.0016  Score=66.20  Aligned_cols=155  Identities=18%  Similarity=0.245  Sum_probs=89.1

Q ss_pred             cCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee-eeCCCC
Q 009416          130 NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVNLS  208 (535)
Q Consensus       130 ~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-~~~~l~  208 (535)
                      .+|..+.++..|++|+|+.|.+...+.-..+--|+.|-+++|+++..  +.-++..+.|..|+.+.|....-. .+.++.
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei~slpsql~~l~  189 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT  189 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccC--CcccccchhHHHhhhhhhhhhhchHHhhhHH
Confidence            56666777777777777777764332222333477777777766321  112345667777777766532211 344456


Q ss_pred             CccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHH-hcCCCCCccEEEee
Q 009416          209 NLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN-GISKLPLLEYLSMT  285 (535)
Q Consensus       209 ~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~-l~~~~~~L~~L~L~  285 (535)
                      +|+.|.+..+. +..++  +..-.|.+|+++.|....+++.|..+..|+.|.|.+|.+.....+- .-+...--++|++.
T Consensus       190 slr~l~vrRn~-l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q  268 (722)
T KOG0532|consen  190 SLRDLNVRRNH-LEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ  268 (722)
T ss_pred             HHHHHHHhhhh-hhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence            66666666551 11111  1133577788887776667888888999999999888775422111 11223334556665


Q ss_pred             cC
Q 009416          286 KC  287 (535)
Q Consensus       286 ~c  287 (535)
                      -|
T Consensus       269 A~  270 (722)
T KOG0532|consen  269 AC  270 (722)
T ss_pred             hc
Confidence            55

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.72  E-value=0.02  Score=37.89  Aligned_cols=33  Identities=33%  Similarity=0.365  Sum_probs=18.0

Q ss_pred             ccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416          253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       253 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      +|++|+++++.+++-  ...+.++++|+.|+++++
T Consensus         2 ~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDL--PPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCccc--CchHhCCCCCCEEEecCC
Confidence            456666666666542  222556667777776665

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.52  E-value=0.00077  Score=70.38  Aligned_cols=119  Identities=18%  Similarity=0.154  Sum_probs=52.5

Q ss_pred             eeEEEEeCccccCC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCC--CceeeeCCCCCccEEEEee
Q 009416          141 LHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG--LESLDLVNLSNLKEIILVN  217 (535)
Q Consensus       141 L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~--l~~~~~~~l~~L~~L~l~~  217 (535)
                      |...+.++|.+... .+..-++.|+.|+|+.|++..-  . .+..|+.|++|+|++|..  +..+...++ .|..|.+++
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence            44444445544222 4444556666666666655321  1 134566666666666532  223333333 255555555


Q ss_pred             c--CCccEEeecCCcccEEEEeeec--ccCeEEecCcccccceeEeeccCC
Q 009416          218 T--SDIKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPI  264 (535)
Q Consensus       218 c--~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L~L~~~~~  264 (535)
                      +  ..+..+. ++.+|+.|+++.|.  ...-...+..+..|+.|.|.+|.+
T Consensus       242 N~l~tL~gie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTLRGIE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhhhhHH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            4  1111110 33445555555443  111111233444455555555443

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.27  E-value=0.031  Score=52.90  Aligned_cols=39  Identities=26%  Similarity=0.479  Sum_probs=32.6

Q ss_pred             CCCCcCCCCCHHHHHHHHc-----CCChhHHHHHhhhhhhhHHh
Q 009416            7 LEVDGISTLPEPILHHILS-----FLPFKEVAQTCLLSKRWKQV   45 (535)
Q Consensus         7 ~~~D~is~LPdeiL~~Ils-----~L~~~d~~r~s~vskrWr~l   45 (535)
                      ++.+.|+.||||||..||.     .++.+++.++|+|||.|+..
T Consensus       102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            3345678999999999997     45679999999999999853

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.24  E-value=0.0043  Score=57.71  Aligned_cols=79  Identities=19%  Similarity=0.178  Sum_probs=54.2

Q ss_pred             CCccEEEEeecCCccEEee--cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEee
Q 009416          208 SNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT  285 (535)
Q Consensus       208 ~~L~~L~l~~c~~l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~  285 (535)
                      .+.+.|+.++| ++..+.+  .+|.|+.|.++-|.... ...+..|.+|++|+|..|.+.+..-...+.++|+|+.|.|.
T Consensus        19 ~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCC-CccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            34555666665 3444443  67778888877766221 34577899999999998888764444447899999999998


Q ss_pred             cCC
Q 009416          286 KCH  288 (535)
Q Consensus       286 ~c~  288 (535)
                      ..+
T Consensus        97 ENP   99 (388)
T KOG2123|consen   97 ENP   99 (388)
T ss_pred             cCC
Confidence            743

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=93.87  E-value=0.051  Score=53.87  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             cCCCCCHHHHHHHHcCCC-hhHHHHHhhhhhhhHHhhcc
Q 009416           11 GISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQT   48 (535)
Q Consensus        11 ~is~LPdeiL~~Ils~L~-~~d~~r~s~vskrWr~lw~~   48 (535)
                      ..++||+|+|..|..+|+ .-|++|.+.||+.||.....
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            478999999999999996 67999999999999986543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=93.81  E-value=0.0014  Score=66.73  Aligned_cols=153  Identities=18%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             ccCCccccCCCceeEEEEeCccc-cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCC-ceeeeCC
Q 009416          129 RNLPEIIFYVESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGL-ESLDLVN  206 (535)
Q Consensus       129 ~~lp~~l~~~~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l-~~~~~~~  206 (535)
                      ..+|..+..|..|..|.|..|.+ ..+..+.++..|+.|+|+.|.++.....  +-.|| |+.|.+++|... ....+..
T Consensus        88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lp-Lkvli~sNNkl~~lp~~ig~  164 (722)
T KOG0532|consen   88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLP-LKVLIVSNNKLTSLPEEIGL  164 (722)
T ss_pred             ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh--hhcCc-ceeEEEecCccccCCccccc
Confidence            35666666667788888887666 5557788899999999988876432222  33344 788887777542 1224455


Q ss_pred             CCCccEEEEeecCCccEEe---ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEE
Q 009416          207 LSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS  283 (535)
Q Consensus       207 l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~  283 (535)
                      .++|..|+.+.| .+..+.   ..+.+|+.|.+..+....++..+..+ .|..|++++|+++.-.. . +.++..|+.|.
T Consensus       165 ~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv-~-fr~m~~Lq~l~  240 (722)
T KOG0532|consen  165 LPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV-D-FRKMRHLQVLQ  240 (722)
T ss_pred             chhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecch-h-hhhhhhheeee
Confidence            678888888777 222222   24556677766666633334444433 47778888887764222 1 55677888888


Q ss_pred             eecCC
Q 009416          284 MTKCH  288 (535)
Q Consensus       284 L~~c~  288 (535)
                      |.+.+
T Consensus       241 LenNP  245 (722)
T KOG0532|consen  241 LENNP  245 (722)
T ss_pred             eccCC
Confidence            87744

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.71  E-value=0.015  Score=51.71  Aligned_cols=88  Identities=20%  Similarity=0.258  Sum_probs=55.8

Q ss_pred             cCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEee-ChhHHHHHHhCCCcccEEEEeecCCCcee---e
Q 009416          130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---D  203 (535)
Q Consensus       130 ~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~  203 (535)
                      .+|..-..-..++.++-+++.+...  ..+.+++.++.|.+.+|.. ++..+..+-...|+|+.|+|+.|+.+++-   .
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence            4554333334566677666654221  4456777888888877755 66677776667788888888888877554   2


Q ss_pred             eCCCCCccEEEEee
Q 009416          204 LVNLSNLKEIILVN  217 (535)
Q Consensus       204 ~~~l~~L~~L~l~~  217 (535)
                      +..+++|+.|.+.+
T Consensus       172 L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHhhhhHHHHhcC
Confidence            33456666665553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.49  E-value=0.0088  Score=61.58  Aligned_cols=81  Identities=21%  Similarity=0.178  Sum_probs=44.7

Q ss_pred             ccCCCceeEEEEeCccccCCCC-cccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEE
Q 009416          135 IFYVESLHVLELSYCKLQQPSE-NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI  213 (535)
Q Consensus       135 l~~~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L  213 (535)
                      +..+.+|+.|++.++.+..... ...+++|++|++++|.++.  +.. +..++.|+.|++.+|.....-.+..+++|+.+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l  167 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--LEG-LSTLTLLKELNLSGNLISDISGLESLKSLKLL  167 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecccccccc--ccc-hhhccchhhheeccCcchhccCCccchhhhcc
Confidence            4455777777777777654444 5667777777777776622  111 23445577777776654322233333444444


Q ss_pred             EEeec
Q 009416          214 ILVNT  218 (535)
Q Consensus       214 ~l~~c  218 (535)
                      ++.++
T Consensus       168 ~l~~n  172 (414)
T KOG0531|consen  168 DLSYN  172 (414)
T ss_pred             cCCcc
Confidence            44443

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.65  E-value=0.18  Score=28.98  Aligned_cols=25  Identities=44%  Similarity=0.852  Sum_probs=21.3

Q ss_pred             ccceeEeeeEee-ChhHHHHHHhCCC
Q 009416          162 SLRKLALREVCA-DDQAIASLISGCP  186 (535)
Q Consensus       162 ~L~~L~L~~~~~-~~~~l~~~~~~~p  186 (535)
                      +||+|+|..+.+ ++..+..++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999998 4557899999997

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=92.58  E-value=0.027  Score=57.95  Aligned_cols=125  Identities=25%  Similarity=0.233  Sum_probs=61.9

Q ss_pred             CCceeEEEEeCccccC-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEe
Q 009416          138 VESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV  216 (535)
Q Consensus       138 ~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~  216 (535)
                      +..++.+.+..+.+.. ......+.+|+.|++.++.+.  .+...+..+++|+.|++++|....-..+..++.|+.|.+.
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS  148 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchh--hcccchhhhhcchheeccccccccccchhhccchhhheec
Confidence            3444444455554432 133555666666666666552  1222234566666666666654333344445556666666


Q ss_pred             ec--CCccEEeecCCcccEEEEeeecccCeEEe-cCcccccceeEeeccCCC
Q 009416          217 NT--SDIKRVEIKTSNVNALAIHQTYLFPIEVN-VSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       217 ~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~  265 (535)
                      +|  ..+..+. .+++|+.++++++....+... ...+.+++.+.+.++.+.
T Consensus       149 ~N~i~~~~~~~-~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  149 GNLISDISGLE-SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             cCcchhccCCc-cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            65  1111111 145566666665552211111 355566666666655543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.55  E-value=0.14  Score=47.91  Aligned_cols=185  Identities=16%  Similarity=0.124  Sum_probs=107.1

Q ss_pred             ceeEEEEEEecCCCCCChhhHHHHHHHHHh--cCceEEEEecc--CCCCccCCc-------cccCCCceeEEEEeCcccc
Q 009416           84 SIKKFSLELDLINSPENASLAGRCLGLAIE--SEVKELVLVHW--RSERRNLPE-------IIFYVESLHVLELSYCKLQ  152 (535)
Q Consensus        84 ~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~--~~l~~L~L~~~--~~~~~~lp~-------~l~~~~~L~~L~L~~~~~~  152 (535)
                      .+..+.++..     ..+.....|+...++  ++++...++.-  +..-..+|.       .+..||+|+..+||.|.+.
T Consensus        31 ~~~evdLSGN-----tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          31 ELVEVDLSGN-----TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             ceeEEeccCC-----cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            4445555533     456677788877665  46777766541  112223333       3467999999999999884


Q ss_pred             C--C----CCcccCcccceeEeeeEeeC---hhHHH---------HHHhCCCcccEEEEeecCCCcee------eeCCCC
Q 009416          153 Q--P----SENVKLFSLRKLALREVCAD---DQAIA---------SLISGCPLIEYLEIRSCEGLESL------DLVNLS  208 (535)
Q Consensus       153 ~--~----~~~~~l~~L~~L~L~~~~~~---~~~l~---------~~~~~~p~Le~L~L~~c~~l~~~------~~~~l~  208 (535)
                      .  +    ..+..-+.|+.|.+++|-++   ++-+.         .-++.-|.|+......|......      .+.+-.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            3  2    23456788999999998652   22222         22446788888877777543211      111113


Q ss_pred             CccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHH---HHHhcCCCCCccEEEee
Q 009416          209 NLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMT  285 (535)
Q Consensus       209 ~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~---l~~l~~~~~~L~~L~L~  285 (535)
                      .|+.+.+..+. +.+-.+     +.         -....+..+++|+.|+|..|.++...   +...+...+.|+.|.+.
T Consensus       186 ~lk~vki~qNg-Irpegv-----~~---------L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         186 NLKEVKIQQNG-IRPEGV-----TM---------LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             CceeEEeeecC-cCcchh-----HH---------HHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            55555554431 100000     00         01122455788999999888877643   33445556778888888


Q ss_pred             cCC
Q 009416          286 KCH  288 (535)
Q Consensus       286 ~c~  288 (535)
                      +|-
T Consensus       251 DCl  253 (388)
T COG5238         251 DCL  253 (388)
T ss_pred             chh
Confidence            873

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.80  E-value=0.048  Score=48.58  Aligned_cols=62  Identities=11%  Similarity=0.190  Sum_probs=44.0

Q ss_pred             ccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCC----CCCccEEEEeecCCccEE
Q 009416          162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVN----LSNLKEIILVNTSDIKRV  224 (535)
Q Consensus       162 ~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~----l~~L~~L~l~~c~~l~~~  224 (535)
                      .++.++-+++.+..+.+.. +.+++.++.|.+.+|..++.+.+..    .++|+.|++++|..+...
T Consensus       102 ~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~  167 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG  167 (221)
T ss_pred             eEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence            4667777777776667776 5789999999999998887663332    367777777777555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=86.13  E-value=0.11  Score=43.40  Aligned_cols=82  Identities=16%  Similarity=0.110  Sum_probs=52.4

Q ss_pred             ceEEEEeccCCC-CccCCccccCCCceeEEEEeCcccc-CCCC-cccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          116 VKELVLVHWRSE-RRNLPEIIFYVESLHVLELSYCKLQ-QPSE-NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       116 l~~L~L~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~-~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      +..++|+.|... ....+..+.....|+..+|++|.+. .|+. ...+|.++.|++++|.+.+  ++.-++.+|.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcc
Confidence            344555554322 2233334445577888888888874 3333 3467788999998887744  233377888999999


Q ss_pred             EeecCCC
Q 009416          193 IRSCEGL  199 (535)
Q Consensus       193 L~~c~~l  199 (535)
                      ++.|+..
T Consensus       107 l~~N~l~  113 (177)
T KOG4579|consen  107 LRFNPLN  113 (177)
T ss_pred             cccCccc
Confidence            8888754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=86.07  E-value=0.37  Score=50.92  Aligned_cols=40  Identities=28%  Similarity=0.475  Sum_probs=36.8

Q ss_pred             CCCCCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416            6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV   45 (535)
Q Consensus         6 ~~~~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~l   45 (535)
                      ....|.++.||-|+..+||++|+.++++++++||+.|+.+
T Consensus       102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            3557999999999999999999999999999999999864

>PF13013 F-box-like_2: F-box-like domain

Probab=84.05  E-value=1  Score=36.29  Aligned_cols=30  Identities=13%  Similarity=0.140  Sum_probs=27.1

Q ss_pred             cCCCCCHHHHHHHHcCCChhHHHHHhhhhh
Q 009416           11 GISTLPEPILHHILSFLPFKEVAQTCLLSK   40 (535)
Q Consensus        11 ~is~LPdeiL~~Ils~L~~~d~~r~s~vsk   40 (535)
                      .+.+||+||+..|+.+-...+...+...|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            477899999999999999999988888877

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=82.48  E-value=0.79  Score=38.14  Aligned_cols=57  Identities=11%  Similarity=0.120  Sum_probs=22.7

Q ss_pred             CCCceeEEEEeCccccCC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEee
Q 009416          137 YVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRS  195 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~  195 (535)
                      .|++|+.+.+........ ..+..+++|+.+.+...-..-+  ...+..|+.|+.+.+..
T Consensus        10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~--~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen   10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIG--DNAFSNCKSLESITFPN   67 (129)
T ss_dssp             T-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE---TTTTTT-TT-EEEEETS
T ss_pred             CCCCCCEEEECCCeeEeChhhcccccccccccccccccccc--eeeeecccccccccccc
Confidence            456677666654211111 3445566666666654311111  12245566666666643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	535
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	6e-06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	7e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 71.4 bits (175), Expect = 9e-14
 Identities = 48/309 (15%), Positives = 111/309 (35%), Gaps = 47/309 (15%)

Query: 12  ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSL 71
             +LP+ +L  I S L   E+ +   + KRW +            + ++    + +  + 
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYR------------LASDESLWQTLDLTG 56

Query: 72  EPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNL 131
           +    +   +++S    +         +  +       +      + + L +   E   L
Sbjct: 57  KNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV------QHMDLSNSVIEVSTL 110

Query: 132 PEIIFYVESLHVLELSYCKLQQPSENV--KLFSLRKLALREVCA-DDQAIASLISGCPLI 188
             I+     L  L L   +L  P  N   K  +L +L L       + A+ +L+S C  +
Sbjct: 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170

Query: 189 EYLEIRSC-----EGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP 243
           + L +  C     + ++         + ++ L          ++ S+++ L      L  
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK----NLQKSDLSTLVRRCPNL-- 224

Query: 244 IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISS----PC 299
           + +++S    LK          ++       +L  L++LS+++C+ +    +      P 
Sbjct: 225 VHLDLSDSVMLK----------NDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273

Query: 300 LKTLILECC 308
           LKTL +   
Sbjct: 274 LKTLQVFGI 282

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.7 bits (167), Expect = 3e-12
 Identities = 97/621 (15%), Positives = 194/621 (31%), Gaps = 203/621 (32%)

Query: 1   MMRIGVL---EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVG-- 55
           M +  +L   E+D I    + +   +  F          LLSK+ +++ Q F  VE    
Sbjct: 41  MPK-SILSKEEIDHIIMSKDAVSGTLRLF--------WTLLSKQ-EEMVQKF--VEEVLR 88

Query: 56  ---GMFTNPRKSKEILTSLE-------------------PALLNRQRKMISIKKFSLELD 93
                  +P K+++   S+                       ++R +  + +++  LEL 
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 94  LINSPENASLAGRCLG-----LAIESEVKELVL------VHWRS-ERRNLPE-IIFYVES 140
                +N  + G  LG     +A++  +   V       + W + +  N PE ++  ++ 
Sbjct: 149 ---PAKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 141 L-HVLELSYCKLQQPSENVKL-FSLRKLALREVCADDQAIASLISGCPLIEYL-EIRSCE 197
           L + ++ ++      S N+KL     +  LR +         L     L+  L  +++ +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LV--LLNVQNAK 257

Query: 198 GLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL 257
              + +L    + K  IL+ T             + L+   T    ++ +  +       
Sbjct: 258 AWNAFNL----SCK--ILLTTRFK-------QVTDFLSAATTTHISLDHHSMT------- 297

Query: 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL-TSVRISSPCLKTLILECCDKLIQVEI 316
                P E + L        LL+YL   +   L   V  ++P   ++I E     I+  +
Sbjct: 298 ---LTPDEVKSL--------LLKYLDC-RPQDLPREVLTTNPRRLSIIAE----SIRDGL 341

Query: 317 ETPNLSIFKY-----HGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKF 371
            T +   +K+        +I  S N L  +E                 + F+ L++F   
Sbjct: 342 ATWDN--WKHVNCDKLTTIIESSLNVLEPAEYR---------------KMFDRLSVFP-- 382

Query: 372 SKVLNLQCREGENVIVPQELRQI------QSPPLTSVKKLNYSVRTDSWDFSVANVRARS 425
                       +  +P  L  +      +S  +  V KL+         +S+   + + 
Sbjct: 383 -----------PSAHIPTILLSLIWFDVIKSDVMVVVNKLH--------KYSLVEKQPKE 423

Query: 426 SRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQI--SYKKQLIYDGEIPRCCQSLPVS 483
           S  SI       L      E        LH+    I   Y     +D +       L   
Sbjct: 424 STISI---PSIYLELKVKLE----NEYALHR---SIVDHYNIPKTFDSD------DLIPP 467

Query: 484 CWQ---------HCIN--------------------EVKVEHTKSLSITEDGELQ--HDV 512
                       H  N                    E K+ H  +        L     +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 513 RSY--YCFEGGEDIFEKIDDL 531
           + Y  Y  +        ++ +
Sbjct: 528 KFYKPYICDNDPKYERLVNAI 548

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 8e-10
 Identities = 76/436 (17%), Positives = 135/436 (30%), Gaps = 111/436 (25%)

Query: 8   EVDGISTLPEPI--LHHILSFLPFKEVAQTCLLSKR--W-KQVWQTFPDVEVGGMFTNPR 62
             D  S +   I  +   L  L   +  + CLL        + W  F ++          
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NL---------- 264

Query: 63  KSKEILT----SLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKE 118
             K +LT     +   L       IS+   S+ L      E  SL  + L    +   +E
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDEVKSLLLKYLDCRPQDLPRE 321

Query: 119 LVLVH-------WRSERRNLPEIIFY----VESL-HVLELSYCKLQQPSENVKLFSLRKL 166
           ++  +         S R  L     +     + L  ++E S   L+ P+E  K+F   +L
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMF--DRL 378

Query: 167 ALREVCADDQAI-ASLISG--CPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKR 223
           +   V      I   L+S     +I+   +     L    LV     +  I +    I  
Sbjct: 379 S---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP--SIYL 433

Query: 224 VEIKTSNVNALAIHQT----YLFPIEVNVSSCGNLKCLKFD--FLPIEDEWLCNGIS--- 274
            E+K    N  A+H++    Y  P           K    D    P  D++  + I    
Sbjct: 434 -ELKVKLENEYALHRSIVDHYNIP-----------KTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 275 -------KLPLLE--YLSM----TK-CHKLTSVRISSPCLKTLI-LECCDKLIQVEIETP 319
                  ++ L    +L       K  H  T+   S   L TL  L+     I       
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 320 NLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQC 379
                +    ++ F        E +L  S +   ++   +     +A+  +         
Sbjct: 542 E----RLVNAILDFLPKI----EENLICSKYT--DL---LR----IALMAE--------- 575

Query: 380 REGENVIVPQELRQIQ 395
              +  I  +  +Q+Q
Sbjct: 576 ---DEAIFEEAHKQVQ 588

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 66.5 bits (162), Expect = 9e-12
 Identities = 57/335 (17%), Positives = 104/335 (31%), Gaps = 40/335 (11%)

Query: 7   LEVDGISTLPEPILHHILSFLPFKEVAQTCLL-SKRWKQVW-QTFPDVEVGGM-FTNPRK 63
           ++     + PE +L H+ SF+   +   +  L  K W ++       V +G     +P  
Sbjct: 1   MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT 60

Query: 64  SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVH 123
                  +    L  +                  P   +++     L      +E+ L  
Sbjct: 61  VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL------EEIRLKR 114

Query: 124 WRSERRNLPEIIFYVESLHVLELSYCK------LQQPSENVKLFSLRKLALRE---VCAD 174
                  L  I    ++  VL LS C+      L   +   +  +L++L LRE       
Sbjct: 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR--NLKELDLRESDVDDVS 172

Query: 175 DQAIASLISGCPLIEYLEIRSC------EGLESLDLVNLSNLKEIIL---VNTSDIKRVE 225
              ++        +  L I           LE L +    NLK + L   V    +  + 
Sbjct: 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERL-VTRCPNLKSLKLNRAVPLEKLATLL 231

Query: 226 IKTSNVNALAIHQ-------TYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL 278
            +   +  L                + V +S C  L+CL   F      +L    S    
Sbjct: 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG-FWDAVPAYLPAVYSVCSR 290

Query: 279 LEYLSMTKCHKLTS--VRISSPCLKTLILECCDKL 311
           L  L+++     +   V++   C K   L   D +
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 44/354 (12%), Positives = 104/354 (29%), Gaps = 43/354 (12%)

Query: 12  ISTLPEPILHHILSFLPFKEVAQTCLL-SKRWKQV-WQTFPDVEVGGMFT-NPRKSKEIL 68
                + ++  +++++   +   +  L  +RW ++  +T   V +   +T  P +     
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72

Query: 69  TSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRC--------------------L 108
            +L    L  + +               +P    ++                       L
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 109 GLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCK--------LQQPSENVK 159
             A   +++ L L          L  I+ +   +  L +            L + +++  
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 160 LFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLV----NLSNLKEII 214
              +    + E      + + ++   C  +  +++   E LE +       NL       
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 215 LVNTSDIKRVEIKTSN---VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271
           L     +    +       +  L +       + +       ++ L   +  +E E  C 
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312

Query: 272 GISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLS 322
            I K P LE L          + +       LK L +E       +E E   +S
Sbjct: 313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 50/251 (19%), Positives = 78/251 (31%), Gaps = 26/251 (10%)

Query: 68  LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSE 127
                 A  NR          +       +          L  A +     L L      
Sbjct: 35  WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL--RSVP 92

Query: 128 RRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCP 186
               P+  F +  L  + +    L + P    +   L  L L              +  P
Sbjct: 93  LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTL--------------ARNP 138

Query: 187 LIEYL--EIRSCEGLESLDLVNLSNLKEI-ILVNTSDIKRVEIKTSNVNALAIHQTYLFP 243
           L   L   I S   L  L +     L E+   + ++D         N+ +L +  T +  
Sbjct: 139 LRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197

Query: 244 IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV--RISS-PCL 300
           +  ++++  NLK LK    P+    L   I  LP LE L +  C  L +          L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 301 KTLILECCDKL 311
           K LIL+ C  L
Sbjct: 256 KRLILKDCSNL 266

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 8  EVDGISTLPEPILHHILSFLPFKEVAQTC-LLSKRWKQV 45
           V+ ++ LPEP+L  +L+ LP  E+ Q C L+  RWK++
Sbjct: 47 AVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
            +LP+ +L  I S L   E+ +   + KRW ++
Sbjct: 9  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 42

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTF 49
           ++ LP  +  +ILSFL   ++ Q    +  W +       W+ F
Sbjct: 4  TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF 48

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 13/115 (11%)

Query: 123 HWRSERRNLPEIIFYVESLHVLELSYCKL--QQPSENVKLFSLRKLALREVCA-DDQAIA 179
            W+ +  +LP        +  ++ +   +          L  + K+ L +    +D  + 
Sbjct: 45  RWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE 104

Query: 180 SLISGCPL---IEYLEIRSC-----EGLESLDLVNLSNLKEIILVNTSDIKRVEI 226
            L     L   +  +EI SC     +G+ +  L +  NLK + L +   +K  E 
Sbjct: 105 RLSQLENLQKSMLEMEIISCGNVTDKGIIA--LHHFRNLKYLFLSDLPGVKEKEK 157

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 14/169 (8%)

Query: 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL-ISGCPLIEYLEIRSCE 197
            +L  L+     +   +   KL  L KL           I +L +S    + YL   S +
Sbjct: 42  ATLTSLDCHNSSITDMTGIEKLTGLTKLIC-----TSNNITTLDLSQNTNLTYLACDSNK 96

Query: 198 GLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL 257
            L +LD+  L+ L  +        K    +   +  L   +  L   E++VS    L  L
Sbjct: 97  -LTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTL--TEIDVSHNTQLTEL 153

Query: 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISS-PCLKTLIL 305
                    +     ++    L  L  +   K+T + +S    L  L  
Sbjct: 154 DCHLNKKITK---LDVTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNC 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	535
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.76
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.76
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.74
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.67
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.67
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.66
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.66
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.66
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.66
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.65
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.64
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.63
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.63
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.62
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.62
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.62
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.6
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.59
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.58
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.57
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.54
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.54
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.53
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.51
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.49
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.46
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.44
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.42
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.4
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.4
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.4
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.38
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.37
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.37
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.36
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.34
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.34
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.32
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.3
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.27
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.25
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.25
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.19
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.14
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.12
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.1
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.99
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.97
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.93
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.84
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.81
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.81
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.81
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.7
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.64
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.54
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.42
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.39
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.28
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.27
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.27
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.18
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.13
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.0
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.99
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.93
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.93
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.89
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.83
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.75
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.68
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.55
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.46
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.29
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.85
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.48
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	84.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	83.46

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.4e-27  Score=256.29  Aligned_cols=328  Identities=14%  Similarity=0.126  Sum_probs=163.1

Q ss_pred             CCCCcCC----CCCHHHHHHHHcCC-ChhHHHHHhhhhhhhHHhhccCCc-eeeeccccCccchhHHHHHHHHHHhhcCC
Q 009416            7 LEVDGIS----TLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFPD-VEVGGMFTNPRKSKEILTSLEPALLNRQR   80 (535)
Q Consensus         7 ~~~D~is----~LPdeiL~~Ils~L-~~~d~~r~s~vskrWr~lw~~~~~-l~~~~~~~~~~~~~~~~~~v~~~L~~~~~   80 (535)
                      ++.|+++    +||||+|.+||+|| +.+|+++++.|||||++++...+. +.+...+..         ....++ .+  
T Consensus         4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~---------~~~~~~-~~--   71 (592)
T 3ogk_B            4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTA---------TPDRLS-RR--   71 (592)
T ss_dssp             --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGS---------CHHHHH-HH--
T ss_pred             hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeecccc---------ChHHHH-Hh--
Confidence            4456666    89999999999999 899999999999999988543322 222221111         011111 00  


Q ss_pred             CCCceeEEEEEEecC---------CCC-------------------------CChhhHHHHHHHHHhcCceEEEEeccCC
Q 009416           81 KMISIKKFSLELDLI---------NSP-------------------------ENASLAGRCLGLAIESEVKELVLVHWRS  126 (535)
Q Consensus        81 ~~~~l~~l~l~~~~~---------~~~-------------------------~~~~~~~~wl~~~~~~~l~~L~L~~~~~  126 (535)
                       .+.++.+.+.....         .+.                         ........|+......++++|++..+..
T Consensus        72 -~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~  150 (592)
T 3ogk_B           72 -FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG  150 (592)
T ss_dssp             -CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred             -CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence             12244444432110         000                         0111122233222223355555554431


Q ss_pred             -CCccCCccccCCCceeEEEEeCccccCC------CCcccCcccceeEeeeEeeC---hhHHHHHHhCCCcccEEEEeec
Q 009416          127 -ERRNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCAD---DQAIASLISGCPLIEYLEIRSC  196 (535)
Q Consensus       127 -~~~~lp~~l~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~---~~~l~~~~~~~p~Le~L~L~~c  196 (535)
                       ....++.....|++|++|+|++|.+...      .....+++|++|+++++.++   ...+..++..||+|++|++.+|
T Consensus       151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence             1112222223456666666666654221      12234566666666666553   3455555666777777777665


Q ss_pred             CCCcee-eeCCCCCccEEEEeecCCc------cEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHH
Q 009416          197 EGLESL-DLVNLSNLKEIILVNTSDI------KRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWL  269 (535)
Q Consensus       197 ~~l~~~-~~~~l~~L~~L~l~~c~~l------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l  269 (535)
                      ...+-. .+..+++|+.|.+..+...      ......+++|+.|.+.+.....++..+..+++|++|+++++.+++..+
T Consensus       231 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~  310 (592)
T 3ogk_B          231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH  310 (592)
T ss_dssp             BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred             cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence            432100 2233456666666543111      001114456666666654433344455667777777777777666666


Q ss_pred             HHhcCCCCCccEEEeecCCCCcc---cccCCCCCceEEecc----------Cccccc-----ccccCCceeeEEEcCcch
Q 009416          270 CNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILEC----------CDKLIQ-----VEIETPNLSIFKYHGDLI  331 (535)
Q Consensus       270 ~~l~~~~~~L~~L~L~~c~~l~~---l~~~~~~L~~L~l~~----------c~~L~~-----l~~~~p~L~~L~~~g~~~  331 (535)
                      ..++..+++|+.|++.++-.-..   +...+++|++|++.+          |..+..     +...+++|++|.+.....
T Consensus       311 ~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l  390 (592)
T 3ogk_B          311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI  390 (592)
T ss_dssp             HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred             HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence            56566777777777764211111   112345677777664          544421     112345666666633322


Q ss_pred             -----hhc-ccCcccceeEEEE
Q 009416          332 -----SFS-SNALSLSETSLCF  347 (535)
Q Consensus       332 -----~~~-~~l~~L~~L~l~~  347 (535)
                           ..+ .++++|+.|++..
T Consensus       391 ~~~~~~~l~~~~~~L~~L~l~~  412 (592)
T 3ogk_B          391 TNESLESIGTYLKNLCDFRLVL  412 (592)
T ss_dssp             CHHHHHHHHHHCCSCCEEEEEE
T ss_pred             cHHHHHHHHhhCCCCcEEEEee
Confidence                 112 2355666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=9.8e-27  Score=249.75  Aligned_cols=324  Identities=17%  Similarity=0.217  Sum_probs=170.5

Q ss_pred             CCcCCCCCHHHHHHHHcCCC-hhHHHHHhhhhhhhHHhhcc-CCceeeeccccCccchhHHHHHHHHHHhhcCCCCCcee
Q 009416            9 VDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQT-FPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIK   86 (535)
Q Consensus         9 ~D~is~LPdeiL~~Ils~L~-~~d~~r~s~vskrWr~lw~~-~~~l~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~l~   86 (535)
                      .|++++||||||.+||+||+ .+|+++++.|||||+++... ...+.+...+..  ..       ...+ .   ..+.++
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~--~~-------~~~~-~---~~~~L~   69 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAV--SP-------ATVI-R---RFPKVR   69 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSS--CH-------HHHH-H---HCTTCC
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccccc--CH-------HHHH-h---hCCCce
Confidence            58999999999999999999 99999999999999987221 122333311110  00       0111 1   114566


Q ss_pred             EEEEEEecCC------CCCChhhHHHHHHHHH--hcCceEEEEeccCCCCccCCcccc-CCCceeEEEEeCc-cccC--C
Q 009416           87 KFSLELDLIN------SPENASLAGRCLGLAI--ESEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYC-KLQQ--P  154 (535)
Q Consensus        87 ~l~l~~~~~~------~~~~~~~~~~wl~~~~--~~~l~~L~L~~~~~~~~~lp~~l~-~~~~L~~L~L~~~-~~~~--~  154 (535)
                      .+.+......      .......+..|+....  .+++++|++..+......+ ..+. .+++|++|+|++| .+..  .
T Consensus        70 ~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l  148 (594)
T 2p1m_B           70 SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSSCEGFSTDGL  148 (594)
T ss_dssp             EEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEESCEEEEHHHH
T ss_pred             EEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCCcCCCCHHHH
Confidence            6666643210      0011133445665443  3577777777654322222 2222 4677777777776 3321  1


Q ss_pred             -CCcccCcccceeEeeeEeeCh---hHHHHHHhCCCcccEEEEeecC-CCce--e--eeCCCCCccEEEEeecCCccEEe
Q 009416          155 -SENVKLFSLRKLALREVCADD---QAIASLISGCPLIEYLEIRSCE-GLES--L--DLVNLSNLKEIILVNTSDIKRVE  225 (535)
Q Consensus       155 -~~~~~l~~L~~L~L~~~~~~~---~~l~~~~~~~p~Le~L~L~~c~-~l~~--~--~~~~l~~L~~L~l~~c~~l~~~~  225 (535)
                       ....++++|++|++++|.+++   ..+..+...+++|++|++++|. .+..  +  .+..+++|++|++.+|..+..+.
T Consensus       149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~  228 (594)
T 2p1m_B          149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA  228 (594)
T ss_dssp             HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH
T ss_pred             HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH
Confidence             122356777777777666522   2233334456677777776664 1111  1  01224667777766663222211


Q ss_pred             ---ecCCcccEEEEeee-------------------------------cccCeEEecCcccccceeEeeccCCChHHHHH
Q 009416          226 ---IKTSNVNALAIHQT-------------------------------YLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (535)
Q Consensus       226 ---~~~~~L~~L~l~~~-------------------------------~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~  271 (535)
                         ..+++|+.|.+.++                               ....++..+..+++|++|+++++.+++..+..
T Consensus       229 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~  308 (594)
T 2p1m_B          229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK  308 (594)
T ss_dssp             HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHH
T ss_pred             HHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHH
Confidence               13444444443222                               11112222335778888888888887777777


Q ss_pred             hcCCCCCccEEEeecCCCCc---ccccCCCCCceEEecc--------Ccccc-----cccccCCceeeEEEcCcch----
Q 009416          272 GISKLPLLEYLSMTKCHKLT---SVRISSPCLKTLILEC--------CDKLI-----QVEIETPNLSIFKYHGDLI----  331 (535)
Q Consensus       272 l~~~~~~L~~L~L~~c~~l~---~l~~~~~~L~~L~l~~--------c~~L~-----~l~~~~p~L~~L~~~g~~~----  331 (535)
                      ++.++++|++|++.+|..-.   .+...+++|+.|++..        |..+.     .+...+++|+.|.+.+...    
T Consensus       309 ~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~  388 (594)
T 2p1m_B          309 LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA  388 (594)
T ss_dssp             HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred             HHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence            77788888888888762111   1112457788888743        33331     1122356777775544332    


Q ss_pred             --hhcccCcccceeEEE
Q 009416          332 --SFSSNALSLSETSLC  346 (535)
Q Consensus       332 --~~~~~l~~L~~L~l~  346 (535)
                        ....++++|+.|++.
T Consensus       389 ~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          389 LITIARNRPNMTRFRLC  405 (594)
T ss_dssp             HHHHHHHCTTCCEEEEE
T ss_pred             HHHHHhhCCCcceeEee
Confidence              112346777777776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=2.4e-23  Score=206.98  Aligned_cols=293  Identities=17%  Similarity=0.163  Sum_probs=159.8

Q ss_pred             CCCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhccCCceeeeccccCccchhHHHHHHHHHHhhcCCCCCceeE
Q 009416            8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKK   87 (535)
Q Consensus         8 ~~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~~~~~l~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~l~~   87 (535)
                      +...+++||+|++.+||+||+.+|+++++.|||+|+++... |.                                .++.
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~--------------------------------~~~~   51 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES--------------------------------LWQT   51 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST--------------------------------TSSE
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch--------------------------------hhee
Confidence            34568999999999999999999999999999999997532 11                                0111


Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHhcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccC---CCCcccCcccc
Q 009416           88 FSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ---PSENVKLFSLR  164 (535)
Q Consensus        88 l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~---~~~~~~l~~L~  164 (535)
                      +.++  ...  ..    +..+.....++++.+++..+...  ..+..++.+++|++|++++|.+..   +..+..+++|+
T Consensus        52 l~l~--~~~--~~----~~~~~~~~~~~l~~L~l~~n~l~--~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           52 LDLT--GKN--LH----PDVTGRLLSQGVIAFRCPRSFMD--QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             EECT--TCB--CC----HHHHHHHHHTTCSEEECTTCEEC--SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             eccc--ccc--CC----HHHHHhhhhccceEEEcCCcccc--ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            1111  000  00    12233333456677766554322  223334556667777777665531   13345566666


Q ss_pred             eeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCce--e--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec
Q 009416          165 KLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--L--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY  240 (535)
Q Consensus       165 ~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~--~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~  240 (535)
                      +|++++|.+++..... ++.+++|++|++++|..+..  +  .+.++++|++|++++|..+..                 
T Consensus       122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~-----------------  183 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE-----------------  183 (336)
T ss_dssp             EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH-----------------
T ss_pred             EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh-----------------
Confidence            6666666655443332 45566666666666643332  1  122334444444444322211                 


Q ss_pred             ccCeEEecCccc-ccceeEeecc--CCChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCccccc
Q 009416          241 LFPIEVNVSSCG-NLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQ  313 (535)
Q Consensus       241 ~~~~~~~~~~l~-~L~~L~L~~~--~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~  313 (535)
                       ..++..+..++ +|++|+++++  .+++..+...+.++++|+.|++++|..++....    ..++|++|++++|..+..
T Consensus       184 -~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  262 (336)
T 2ast_B          184 -KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  262 (336)
T ss_dssp             -HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             -HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence             01233355667 7777777776  566555555566778888888877764332111    335666666666543211


Q ss_pred             ccccCCceeeEEEcCcchhhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccc
Q 009416          314 VEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQ  389 (535)
Q Consensus       314 l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~  389 (535)
                      -..               ..+.++++|+.|++..+  .  +...+..+..      +++ .|.++++.++ +..|+
T Consensus       263 ~~~---------------~~l~~~~~L~~L~l~~~--i--~~~~~~~l~~------~l~-~L~l~~n~l~-~~~~~  311 (336)
T 2ast_B          263 ETL---------------LELGEIPTLKTLQVFGI--V--PDGTLQLLKE------ALP-HLQINCSHFT-TIARP  311 (336)
T ss_dssp             GGG---------------GGGGGCTTCCEEECTTS--S--CTTCHHHHHH------HST-TSEESCCCSC-CTTCS
T ss_pred             HHH---------------HHHhcCCCCCEEeccCc--c--CHHHHHHHHh------hCc-ceEEecccCc-cccCC
Confidence            100               13456777777777544  1  1112222222      345 5567777777 55554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.77  E-value=4.8e-19  Score=176.67  Aligned_cols=269  Identities=14%  Similarity=0.135  Sum_probs=169.5

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      .++++.|++..+...  .+|. +..+++|++|++++|.+...+.+..+++|++|++++|.+..-  + .+..+++|++|+
T Consensus        43 l~~L~~L~l~~~~i~--~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~  116 (347)
T 4fmz_A           43 LESITKLVVAGEKVA--SIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELY  116 (347)
T ss_dssp             HTTCSEEECCSSCCC--CCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEE
T ss_pred             cccccEEEEeCCccc--cchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEE
Confidence            467888888765433  4443 667888888888888775554577888888888888877432  2 267888888888


Q ss_pred             EeecCCCceeeeCCCCCccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (535)
Q Consensus       193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~  270 (535)
                      +++|.......+..+++|+.|++++|.....+.  ..+++|++|++.++...... .+..+++|+.|+++++.+.+... 
T Consensus       117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-  194 (347)
T 4fmz_A          117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDISP-  194 (347)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECTTSCCCCCGG-
T ss_pred             CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch-hhccCCCCCEEEccCCccccccc-
Confidence            888864433246677888888888885444333  26778888888877622211 26778888888888777665322 


Q ss_pred             HhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccccc--cccCCceeeEEEcCcch---hhcccCcccceeE
Q 009416          271 NGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV--EIETPNLSIFKYHGDLI---SFSSNALSLSETS  344 (535)
Q Consensus       271 ~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l--~~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~  344 (535)
                        +..+++|+.|++.++......+. ..++|+.|++++|.- ..+  ....++|+.|.++++..   ..+..+++|+.|+
T Consensus       195 --~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  271 (347)
T 4fmz_A          195 --LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLN  271 (347)
T ss_dssp             --GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             --ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEE
Confidence              55678888888887643322222 446777777776642 111  22446677777766654   3455666777777


Q ss_pred             EEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416          345 LCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS  408 (535)
Q Consensus       345 l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~  408 (535)
                      ++.+....     + ..+.   .+++|+ .|.++.+.+. ...+.     .+..+++|++|+++
T Consensus       272 l~~n~l~~-----~-~~~~---~l~~L~-~L~L~~n~l~-~~~~~-----~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          272 VGSNQISD-----I-SVLN---NLSQLN-SLFLNNNQLG-NEDME-----VIGGLTNLTTLFLS  319 (347)
T ss_dssp             CCSSCCCC-----C-GGGG---GCTTCS-EEECCSSCCC-GGGHH-----HHHTCTTCSEEECC
T ss_pred             ccCCccCC-----C-hhhc---CCCCCC-EEECcCCcCC-CcChh-----HhhccccCCEEEcc
Confidence            65442222     1 1234   567777 6666644444 22233     33455677777765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.76  E-value=2.5e-19  Score=197.55  Aligned_cols=231  Identities=16%  Similarity=0.134  Sum_probs=149.9

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccC-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      +++++|++..+.... ..|  ...+++|++|+|++|.+.. .+.++++++|++|++++|.+++. ++..+..+++|++|+
T Consensus       178 ~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~  253 (768)
T 3rgz_A          178 GELKHLAISGNKISG-DVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLN  253 (768)
T ss_dssp             TTCCEEECCSSEEES-CCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEE
T ss_pred             CCCCEEECCCCcccc-cCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEE
Confidence            456666655543211 111  2567888888888887743 25578889999999998887543 344578899999999


Q ss_pred             EeecCCCceeeeCCCCCccEEEEeecC---CccEEee-cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChH
Q 009416          193 IRSCEGLESLDLVNLSNLKEIILVNTS---DIKRVEI-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDE  267 (535)
Q Consensus       193 L~~c~~l~~~~~~~l~~L~~L~l~~c~---~l~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~  267 (535)
                      +++|...+.+....+++|++|++++|.   .+..... .+++|++|+++++. .+..+..++++++|+.|+++++.+.+.
T Consensus       254 Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  333 (768)
T 3rgz_A          254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE  333 (768)
T ss_dssp             CCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             CCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence            999876554444467899999998882   2222212 24899999999887 545566788899999999998888765


Q ss_pred             HHHHhcCCCCCccEEEeecCCCCcccccC---C-CCCceEEeccCcccccccc-----cCCceeeEEEcCcch-----hh
Q 009416          268 WLCNGISKLPLLEYLSMTKCHKLTSVRIS---S-PCLKTLILECCDKLIQVEI-----ETPNLSIFKYHGDLI-----SF  333 (535)
Q Consensus       268 ~l~~l~~~~~~L~~L~L~~c~~l~~l~~~---~-~~L~~L~l~~c~~L~~l~~-----~~p~L~~L~~~g~~~-----~~  333 (535)
                      .+...+..+++|+.|+++++...+.++..   . .+|+.|+++++.-...+..     ..++|+.|.+.++..     ..
T Consensus       334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~  413 (768)
T 3rgz_A          334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT  413 (768)
T ss_dssp             CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred             CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH
Confidence            55555678899999999887543334331   1 2677777766542211110     134556665555443     34


Q ss_pred             cccCcccceeEEEEe
Q 009416          334 SSNALSLSETSLCFS  348 (535)
Q Consensus       334 ~~~l~~L~~L~l~~~  348 (535)
                      +.++++|+.|+++.+
T Consensus       414 l~~l~~L~~L~Ls~N  428 (768)
T 3rgz_A          414 LSNCSELVSLHLSFN  428 (768)
T ss_dssp             GGGCTTCCEEECCSS
T ss_pred             HhcCCCCCEEECcCC
Confidence            455556666655443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.76  E-value=1.6e-18  Score=180.60  Aligned_cols=228  Identities=21%  Similarity=0.201  Sum_probs=112.0

Q ss_pred             cCceEEEEeccCCCCccC-CccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      .+++.|++..+...  .+ |..+..+++|++|+|++|.+..  +..+.++++|++|+|++|.++.-. ...+..+++|++
T Consensus        32 ~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  108 (477)
T 2id5_A           32 TETRLLDLGKNRIK--TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTK  108 (477)
T ss_dssp             TTCSEEECCSSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCE
T ss_pred             CCCcEEECCCCccc--eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC-cccccCCCCCCE
Confidence            35666666554322  22 2345556666666666665522  244556666666666666553211 112445666666


Q ss_pred             EEEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---e-cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccC
Q 009416          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---I-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP  263 (535)
Q Consensus       191 L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~-~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~  263 (535)
                      |+|++|......  .+..+++|+.|+++++. +..+.   + .+++|+.|++.++. .......+.++++|+.|+++++.
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence            666666433221  34455666666666551 11111   1 45566666666555 21112235556666666666555


Q ss_pred             CChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCccccccc----ccCCceeeEEEcCcch-----
Q 009416          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE----IETPNLSIFKYHGDLI-----  331 (535)
Q Consensus       264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~----~~~p~L~~L~~~g~~~-----  331 (535)
                      +...... .+..+++|+.|+++++..++.++.   ...+|+.|+++++. +..+.    ...++|+.|+++++..     
T Consensus       188 i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  265 (477)
T 2id5_A          188 INAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEG  265 (477)
T ss_dssp             CCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred             CcEeChh-hcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccCh
Confidence            5442221 244556666666666555544443   12355555555542 22221    1234555555554433     


Q ss_pred             hhcccCcccceeEEEE
Q 009416          332 SFSSNALSLSETSLCF  347 (535)
Q Consensus       332 ~~~~~l~~L~~L~l~~  347 (535)
                      ..+.++++|+.|++..
T Consensus       266 ~~~~~l~~L~~L~L~~  281 (477)
T 2id5_A          266 SMLHELLRLQEIQLVG  281 (477)
T ss_dssp             TSCTTCTTCCEEECCS
T ss_pred             hhccccccCCEEECCC
Confidence            2234455555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.75  E-value=3.7e-18  Score=170.25  Aligned_cols=270  Identities=14%  Similarity=0.118  Sum_probs=203.9

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      .+++++|++..+...  .+|. +..+++|++|++++|.+...+.+..+++|++|++++|.+....  . +..+++|++|+
T Consensus        65 ~~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~  138 (347)
T 4fmz_A           65 LTNLEYLNLNGNQIT--DISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLN  138 (347)
T ss_dssp             CTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEE
T ss_pred             cCCccEEEccCCccc--cchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCceeEEE
Confidence            568999999887543  4555 7789999999999998876677889999999999999884322  2 67899999999


Q ss_pred             EeecCCCcee-eeCCCCCccEEEEeecCCccEE-eecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416          193 IRSCEGLESL-DLVNLSNLKEIILVNTSDIKRV-EIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (535)
Q Consensus       193 L~~c~~l~~~-~~~~l~~L~~L~l~~c~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~  270 (535)
                      +++|.....+ .+..+++|++|++++|...... ...+++|+.|+++++....... +..+++|+.|+++++.+.+... 
T Consensus       139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-  216 (347)
T 4fmz_A          139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-  216 (347)
T ss_dssp             CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-
Confidence            9999776655 5677899999999998321111 2378999999999987222222 7889999999999988876433 


Q ss_pred             HhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCccccccc--ccCCceeeEEEcCcch---hhcccCcccceeE
Q 009416          271 NGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVE--IETPNLSIFKYHGDLI---SFSSNALSLSETS  344 (535)
Q Consensus       271 ~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~--~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~  344 (535)
                        +..+++|+.|++++|......+. ..++|+.|+++++. +..+.  ...++|+.|.++++..   ..+.++++|+.|+
T Consensus       217 --~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  293 (347)
T 4fmz_A          217 --VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLF  293 (347)
T ss_dssp             --GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             --hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEE
Confidence              56789999999999754332222 56799999998874 33332  3568999999999876   4577899999999


Q ss_pred             EEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEE
Q 009416          345 LCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSV  409 (535)
Q Consensus       345 l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~  409 (535)
                      ++.+....    ..+..+.   .+++|+ .|.++.+.+.  .+++      +..+++|++|+++.
T Consensus       294 L~~n~l~~----~~~~~l~---~l~~L~-~L~L~~n~l~--~~~~------~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          294 LNNNQLGN----EDMEVIG---GLTNLT-TLFLSQNHIT--DIRP------LASLSKMDSADFAN  342 (347)
T ss_dssp             CCSSCCCG----GGHHHHH---TCTTCS-EEECCSSSCC--CCGG------GGGCTTCSEESSSC
T ss_pred             CcCCcCCC----cChhHhh---ccccCC-EEEccCCccc--cccC------hhhhhccceeehhh
Confidence            98775444    4466677   899999 8888866666  2222      33577999998863

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.74  E-value=5.2e-19  Score=195.02  Aligned_cols=262  Identities=15%  Similarity=0.093  Sum_probs=157.4

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--CCC--CcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~~~--~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      .++.+++..++  ...+|..++.+++|++|+|++|.+.  .+.  .++++++|++|++++|.+.......++..+++|++
T Consensus        78 ~L~~l~~~~~~--~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  155 (768)
T 3rgz_A           78 GLESLFLSNSH--INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV  155 (768)
T ss_dssp             TCCEEECTTSC--EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred             cccccCCcCCC--cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence            44444443332  2345667777788888888887764  233  56778888888888777632222222356778888


Q ss_pred             EEEeecCCCcee--e---eCCCCCccEEEEeecCCccEEe-ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccC
Q 009416          191 LEIRSCEGLESL--D---LVNLSNLKEIILVNTSDIKRVE-IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP  263 (535)
Q Consensus       191 L~L~~c~~l~~~--~---~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~  263 (535)
                      |++++|...+..  .   +.++++|++|++++|.-..... ..+++|++|+++++. ....+. ++++++|++|+++++.
T Consensus       156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~  234 (768)
T 3rgz_A          156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK  234 (768)
T ss_dssp             EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC
T ss_pred             EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc
Confidence            888877643322  1   5567788888887772111111 356788888887777 333333 7778888888888877


Q ss_pred             CChHHHHHhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCccccccc----ccCCceeeEEEcCcch-----hh
Q 009416          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVE----IETPNLSIFKYHGDLI-----SF  333 (535)
Q Consensus       264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~----~~~p~L~~L~~~g~~~-----~~  333 (535)
                      +++..+.. +.++++|+.|++++|...+.++. ..++|++|++.++.-...+.    ..+++|+.|+++++..     ..
T Consensus       235 l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~  313 (768)
T 3rgz_A          235 LSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF  313 (768)
T ss_dssp             CCSCHHHH-TTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred             CCCcccHH-HhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH
Confidence            77655544 67778888888887765444433 44677777777664322222    1136777777766643     45


Q ss_pred             cccCcccceeEEEEecccchhhHhH-HHHHhhhhcccccceeEEEEeeccccccccc
Q 009416          334 SSNALSLSETSLCFSSHLMVNIEWV-VEYFEILAMFQKFSKVLNLQCREGENVIVPQ  389 (535)
Q Consensus       334 ~~~l~~L~~L~l~~~~~~~~~~~~l-~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~  389 (535)
                      ++++++|+.|++..+...+    .+ .+.+.   .+++|+ .|.++.+.+. +.+|+
T Consensus       314 ~~~l~~L~~L~L~~n~l~~----~ip~~~l~---~l~~L~-~L~Ls~n~l~-~~~p~  361 (768)
T 3rgz_A          314 FGSCSLLESLALSSNNFSG----ELPMDTLL---KMRGLK-VLDLSFNEFS-GELPE  361 (768)
T ss_dssp             GGGCTTCCEEECCSSEEEE----ECCHHHHT---TCTTCC-EEECCSSEEE-ECCCT
T ss_pred             HhcCCCccEEECCCCcccC----cCCHHHHh---cCCCCC-EEeCcCCccC-ccccH
Confidence            6667777777775443221    12 22344   566666 6666644444 34443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=2.2e-18  Score=178.51  Aligned_cols=308  Identities=14%  Similarity=0.101  Sum_probs=190.8

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--CCCCcccCcccceeEeeeEeeChhHHH-HHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIA-SLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~-~~~~~~p~Le~  190 (535)
                      ++++.|++..+.....--|..+..+++|++|+|++|.+.  .+..+..+++|++|++++|.+++..+. ..+..+++|++
T Consensus        54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  133 (455)
T 3v47_A           54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM  133 (455)
T ss_dssp             TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred             ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence            467777766654322222334556677777777777653  224566677777777777766432222 22556777777


Q ss_pred             EEEeecCCCcee--e-eCCCCCccEEEEeecCC--ccEEe---ecCCcccEEEEeeecccCeE---------EecCcccc
Q 009416          191 LEIRSCEGLESL--D-LVNLSNLKEIILVNTSD--IKRVE---IKTSNVNALAIHQTYLFPIE---------VNVSSCGN  253 (535)
Q Consensus       191 L~L~~c~~l~~~--~-~~~l~~L~~L~l~~c~~--l~~~~---~~~~~L~~L~l~~~~~~~~~---------~~~~~l~~  253 (535)
                      |++++|...+..  . +..+++|++|++++|.-  .....   ...++|+.|++.++......         ..+..+++
T Consensus       134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  213 (455)
T 3v47_A          134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS  213 (455)
T ss_dssp             EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE
T ss_pred             EECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccce
Confidence            777776543221  1 45567777777776621  11000   12256666666665511111         11234578


Q ss_pred             cceeEeeccCCChHHHHHhcC--CCCCccEEEeecCCCCccc------------c---cCCCCCceEEeccCccccc---
Q 009416          254 LKCLKFDFLPIEDEWLCNGIS--KLPLLEYLSMTKCHKLTSV------------R---ISSPCLKTLILECCDKLIQ---  313 (535)
Q Consensus       254 L~~L~L~~~~~~~~~l~~l~~--~~~~L~~L~L~~c~~l~~l------------~---~~~~~L~~L~l~~c~~L~~---  313 (535)
                      |+.|+++++.+.+.....+..  ..++|+.|++.++......            .   ...++|+.|+++++.-...   
T Consensus       214 L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  293 (455)
T 3v47_A          214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS  293 (455)
T ss_dssp             EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred             eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh
Confidence            999999999988766554332  3478999999876432211            0   0235789999987753221   


Q ss_pred             ccccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeecccccccc
Q 009416          314 VEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVP  388 (535)
Q Consensus       314 l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p  388 (535)
                      .....++|+.|.++++..     ..+.++++|+.|+++.+....    ..+..++   .+++|+ .|.++.+.+. ...|
T Consensus       294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~---~l~~L~-~L~Ls~N~l~-~~~~  364 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS----IDSRMFE---NLDKLE-VLDLSYNHIR-ALGD  364 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECGGGGT---TCTTCC-EEECCSSCCC-EECT
T ss_pred             hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC----cChhHhc---CcccCC-EEECCCCccc-ccCh
Confidence            123457899999988765     367788999999997664333    2344556   799999 8888877776 4445


Q ss_pred             ccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecC
Q 009416          389 QELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGH  453 (535)
Q Consensus       389 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~  453 (535)
                      .     .+..+++|++|+++.+                  .+..++...+..+++|+.|.+..++
T Consensus       365 ~-----~~~~l~~L~~L~L~~N------------------~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          365 Q-----SFLGLPNLKELALDTN------------------QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             T-----TTTTCTTCCEEECCSS------------------CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             h-----hccccccccEEECCCC------------------ccccCCHhHhccCCcccEEEccCCC
Confidence            5     6778899999999632                  2334455567788999999998554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.71  E-value=5.4e-18  Score=176.66  Aligned_cols=255  Identities=17%  Similarity=0.089  Sum_probs=146.1

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      ++|++|++..+.... ..|..+..+++|++|+|++|.+...  ..+..+++|++|+|++|.+... ....+..+++|++|
T Consensus        56 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L  133 (477)
T 2id5_A           56 PHLEELELNENIVSA-VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSL  133 (477)
T ss_dssp             TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccCE-eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEE
Confidence            567777776653221 2245566677777777777766432  2356677777777777766321 12235667777777


Q ss_pred             EEeecCCCcee--eeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCC
Q 009416          192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPI  264 (535)
Q Consensus       192 ~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~  264 (535)
                      ++++|......  .+.++++|+.|++++|. +..+.    ..+++|+.|++.++. .......+..+++|+.|+++++..
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence            77776542211  45566777777777762 22221    156777777777766 222223466677777777777655


Q ss_pred             ChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCcccccc----cccCCceeeEEEcCcch-----
Q 009416          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----  331 (535)
Q Consensus       265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l----~~~~p~L~~L~~~g~~~-----  331 (535)
                      .+..... .....+|+.|+++++. ++.++.    ..++|+.|+++++. +..+    ....++|+.|.+.++..     
T Consensus       213 ~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          213 LDTMTPN-CLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEP  289 (477)
T ss_dssp             CCEECTT-TTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred             ccccCcc-cccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECH
Confidence            4433333 2223477777777753 333331    44677777777654 2222    12446777777776654     


Q ss_pred             hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeecc
Q 009416          332 SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREG  382 (535)
Q Consensus       332 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l  382 (535)
                      ..+.++++|+.|+++.+....    ..+..+.   .+++|+ .|.++.|.+
T Consensus       290 ~~~~~l~~L~~L~L~~N~l~~----~~~~~~~---~l~~L~-~L~l~~N~l  332 (477)
T 2id5_A          290 YAFRGLNYLRVLNVSGNQLTT----LEESVFH---SVGNLE-TLILDSNPL  332 (477)
T ss_dssp             TTBTTCTTCCEEECCSSCCSC----CCGGGBS---CGGGCC-EEECCSSCE
T ss_pred             HHhcCcccCCEEECCCCcCce----eCHhHcC---CCcccC-EEEccCCCc
Confidence            345666777777775542222    1123334   566677 666654433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=6.9e-17  Score=167.74  Aligned_cols=290  Identities=16%  Similarity=0.122  Sum_probs=157.0

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ++++.|++..+...  .+|. +..+++|++|++++|.+...+.+..+++|++|++++|.+....  . +..+++|++|++
T Consensus        68 ~~L~~L~Ls~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l  141 (466)
T 1o6v_A           68 NNLTQINFSNNQLT--DITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLEL  141 (466)
T ss_dssp             TTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEEE
T ss_pred             cCCCEEECCCCccC--Cchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEEC
Confidence            45666666554322  3333 5556666666666666544333566666666666666553211  1 456666666666


Q ss_pred             eecCCCceeeeCCCCCccEEEEeec-CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHh
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNT-SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG  272 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l  272 (535)
                      ++|....--.+..+++|+.|.+.++ ..+.. ...+++|+.|+++++..... ..+..+++|+.|+++++.+.+...   
T Consensus       142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~---  216 (466)
T 1o6v_A          142 SSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITP---  216 (466)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG---
T ss_pred             CCCccCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCccccccc---
Confidence            6664322113455566666666543 11111 12456677777766652111 235566677777777666654322   


Q ss_pred             cCCCCCccEEEeecCCCCccccc--CCCCCceEEeccCcccccc-cccCCceeeEEEcCcch---hhcccCcccceeEEE
Q 009416          273 ISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQV-EIETPNLSIFKYHGDLI---SFSSNALSLSETSLC  346 (535)
Q Consensus       273 ~~~~~~L~~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~l-~~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~l~  346 (535)
                      +..+++|+.|+++++.. +.++.  ..++|+.|+++++.--... ....++|+.|.++++..   ..+.++++|+.|+++
T Consensus       217 ~~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~  295 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN  295 (466)
T ss_dssp             GGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             ccccCCCCEEECCCCCc-ccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcC
Confidence            34566777777776532 22221  3456777777665421111 12446677777776654   335667777777775


Q ss_pred             EecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhccccc
Q 009416          347 FSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSS  426 (535)
Q Consensus       347 ~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  426 (535)
                      .+....     ++. +.   .+++|+ .|.++.+.+. . +++      +..+++|++|+++.+.              .
T Consensus       296 ~n~l~~-----~~~-~~---~l~~L~-~L~L~~n~l~-~-~~~------~~~l~~L~~L~l~~n~--------------l  343 (466)
T 1o6v_A          296 ENQLED-----ISP-IS---NLKNLT-YLTLYFNNIS-D-ISP------VSSLTKLQRLFFYNNK--------------V  343 (466)
T ss_dssp             SSCCSC-----CGG-GG---GCTTCS-EEECCSSCCS-C-CGG------GGGCTTCCEEECCSSC--------------C
T ss_pred             CCcccC-----chh-hc---CCCCCC-EEECcCCcCC-C-chh------hccCccCCEeECCCCc--------------c
Confidence            553222     111 34   677777 7777655554 2 221      2356677777775322              1


Q ss_pred             ccchhHHhhhhhccCcccceEEEeecC
Q 009416          427 RFSIANVLDGLLWTSPHAEMVSIEHGH  453 (535)
Q Consensus       427 ~~~l~~l~~~ll~~~p~Le~L~l~~~~  453 (535)
                       .+++     -+..+++|+.|.+..+.
T Consensus       344 -~~~~-----~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          344 -SDVS-----SLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             -CCCG-----GGTTCTTCCEEECCSSC
T ss_pred             -CCch-----hhccCCCCCEEeCCCCc
Confidence             1111     34566889988888554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=1.3e-16  Score=165.75  Aligned_cols=290  Identities=15%  Similarity=0.145  Sum_probs=212.3

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      .+++++|++..+...  .++. +..+++|++|++++|.+...+.+..+++|++|++++|.+..-  . .+..+++|++|.
T Consensus        89 l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~  162 (466)
T 1o6v_A           89 LTKLVDILMNNNQIA--DITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLS  162 (466)
T ss_dssp             CTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC--G-GGTTCTTCSEEE
T ss_pred             cccCCEEECCCCccc--cChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC--h-hhccCCcccEee
Confidence            468999999876543  4555 788999999999999886666688999999999999998542  2 268899999999


Q ss_pred             EeecCCCceeeeCCCCCccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (535)
Q Consensus       193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~  270 (535)
                      +.++ ......+..+++|+.|++++|. +..+.  ..+++|++|+++++...... .++.+++|+.|+++++.+.+.  .
T Consensus       163 l~~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~  237 (466)
T 1o6v_A          163 FGNQ-VTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI--G  237 (466)
T ss_dssp             EEES-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--G
T ss_pred             cCCc-ccCchhhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCcccccc-cccccCCCCEEECCCCCcccc--h
Confidence            9753 2222357788999999999983 22222  26799999999998722211 277899999999999988763  2


Q ss_pred             HhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccccc--cccCCceeeEEEcCcch---hhcccCcccceeE
Q 009416          271 NGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV--EIETPNLSIFKYHGDLI---SFSSNALSLSETS  344 (535)
Q Consensus       271 ~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l--~~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~  344 (535)
                       .+..+++|+.|+++++......+. .+++|+.|+++++.-- .+  ....++|+.|.++++..   ..+.++++|+.|+
T Consensus       238 -~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~  315 (466)
T 1o6v_A          238 -TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT  315 (466)
T ss_dssp             -GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred             -hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC-ccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEE
Confidence             256789999999999764433333 5578999999887432 22  23568999999998876   4578899999999


Q ss_pred             EEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhccc
Q 009416          345 LCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRAR  424 (535)
Q Consensus       345 l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  424 (535)
                      ++.+....    ..+  +.   .+++|+ .|.++.+.+.  .++      .+..+++|++|+++.+.             
T Consensus       316 L~~n~l~~----~~~--~~---~l~~L~-~L~l~~n~l~--~~~------~l~~l~~L~~L~l~~n~-------------  364 (466)
T 1o6v_A          316 LYFNNISD----ISP--VS---SLTKLQ-RLFFYNNKVS--DVS------SLANLTNINWLSAGHNQ-------------  364 (466)
T ss_dssp             CCSSCCSC----CGG--GG---GCTTCC-EEECCSSCCC--CCG------GGTTCTTCCEEECCSSC-------------
T ss_pred             CcCCcCCC----chh--hc---cCccCC-EeECCCCccC--Cch------hhccCCCCCEEeCCCCc-------------
Confidence            98774433    112  45   799999 8888866665  222      45678899999996332             


Q ss_pred             ccccchhHHhhhhhccCcccceEEEeecC
Q 009416          425 SSRFSIANVLDGLLWTSPHAEMVSIEHGH  453 (535)
Q Consensus       425 ~~~~~l~~l~~~ll~~~p~Le~L~l~~~~  453 (535)
                           +..+..  +..+|+|+.|.+..+.
T Consensus       365 -----l~~~~~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          365 -----ISDLTP--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             -----CCBCGG--GTTCTTCCEEECCCEE
T ss_pred             -----cCccch--hhcCCCCCEEeccCCc
Confidence                 111222  5667999999998554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.70  E-value=7.1e-17  Score=159.48  Aligned_cols=215  Identities=19%  Similarity=0.207  Sum_probs=131.9

Q ss_pred             HHHhcCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcc
Q 009416          110 LAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLI  188 (535)
Q Consensus       110 ~~~~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~L  188 (535)
                      .+...+++.|++..+...  .+|..++.+++|++|+|++|.+. .|..++.+++|++|+|++|.+.  .++..+..+++|
T Consensus        77 ~~~~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L  152 (328)
T 4fcg_A           77 DATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRL  152 (328)
T ss_dssp             HHTSTTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTC
T ss_pred             cccccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCC
Confidence            344468999999887644  88999999999999999999885 3466789999999999999885  334457889999


Q ss_pred             cEEEEeecCCCceee-----------eCCCCCccEEEEeecCCccEEe---ecCCcccEEEEeeecccCeEEecCccccc
Q 009416          189 EYLEIRSCEGLESLD-----------LVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNL  254 (535)
Q Consensus       189 e~L~L~~c~~l~~~~-----------~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L  254 (535)
                      ++|++++|...+.+.           +.++++|++|++++|. +..++   ..+++|+.|+++++....++..+..+++|
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L  231 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL  231 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence            999999998765442           1225666666666651 11111   13455555555555422223344555555


Q ss_pred             ceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcch
Q 009416          255 KCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI  331 (535)
Q Consensus       255 ~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~  331 (535)
                      +.|++++|.+.+..+.. +.++++|+.|++++|...+.++.   ..++|+.|++++|..+..++                
T Consensus       232 ~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP----------------  294 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP----------------  294 (328)
T ss_dssp             CEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC----------------
T ss_pred             CEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc----------------
Confidence            55555554444332222 34455555555555544444443   22344444444444333222                


Q ss_pred             hhcccCcccceeEEE
Q 009416          332 SFSSNALSLSETSLC  346 (535)
Q Consensus       332 ~~~~~l~~L~~L~l~  346 (535)
                      ..++++++|+.+++.
T Consensus       295 ~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          295 SLIAQLPANCIILVP  309 (328)
T ss_dssp             GGGGGSCTTCEEECC
T ss_pred             HHHhhccCceEEeCC
Confidence            356677777777663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=1.9e-17  Score=178.46  Aligned_cols=310  Identities=10%  Similarity=0.074  Sum_probs=208.7

Q ss_pred             hcCceEEEEeccCCCCc----------------cCCcccc--CCCceeEEEEeCccc--cCCCCcccCcccceeEeeeEe
Q 009416          113 ESEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKL--QQPSENVKLFSLRKLALREVC  172 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~~--~~~~~~~~l~~L~~L~L~~~~  172 (535)
                      .+++++|++..+...+.                .+|..++  .+++|++|+|++|.+  ..|..++++++|++|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            46899999998764431                1899999  999999999999987  345778899999999999998


Q ss_pred             -eChhHHHHHHhC------CCcccEEEEeecCCCcee----eeCCCCCccEEEEeecCCccEEe--ecCCcccEEEEeee
Q 009416          173 -ADDQAIASLISG------CPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQT  239 (535)
Q Consensus       173 -~~~~~l~~~~~~------~p~Le~L~L~~c~~l~~~----~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~  239 (535)
                       +++..++..+..      +++|++|++++|... .+    .+..+++|+.|++++|.--..++  ..+++|+.|+++++
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN  363 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence             765234444444      499999999999765 44    36778999999999983221222  26789999999988


Q ss_pred             cccCeEEecCcccc-cceeEeeccCCChHHHHHhcCC--CCCccEEEeecCCCCccccc----------CCCCCceEEec
Q 009416          240 YLFPIEVNVSSCGN-LKCLKFDFLPIEDEWLCNGISK--LPLLEYLSMTKCHKLTSVRI----------SSPCLKTLILE  306 (535)
Q Consensus       240 ~~~~~~~~~~~l~~-L~~L~L~~~~~~~~~l~~l~~~--~~~L~~L~L~~c~~l~~l~~----------~~~~L~~L~l~  306 (535)
                      ....++..+..+++ |+.|++++|.++ .. +..+..  +++|+.|+++++...+.++.          ...+|+.|+++
T Consensus       364 ~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~l-p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls  441 (636)
T 4eco_A          364 QITEIPANFCGFTEQVENLSFAHNKLK-YI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS  441 (636)
T ss_dssp             EEEECCTTSEEECTTCCEEECCSSCCS-SC-CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred             ccccccHhhhhhcccCcEEEccCCcCc-cc-chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence            73345556888888 999999999887 22 222333  34899999998765544333          23478888888


Q ss_pred             cCcccccccc----cCCceeeEEEcCcch-----hhcc-------cCcccceeEEEEecccchhhHhHHHHH-hhhhccc
Q 009416          307 CCDKLIQVEI----ETPNLSIFKYHGDLI-----SFSS-------NALSLSETSLCFSSHLMVNIEWVVEYF-EILAMFQ  369 (535)
Q Consensus       307 ~c~~L~~l~~----~~p~L~~L~~~g~~~-----~~~~-------~l~~L~~L~l~~~~~~~~~~~~l~~~l-~~~~~l~  369 (535)
                      ++. +..+..    ..++|+.|.++++..     ..+.       ++++|+.|+++.+....    ....+. .   .++
T Consensus       442 ~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----lp~~~~~~---~l~  513 (636)
T 4eco_A          442 NNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK----LSDDFRAT---TLP  513 (636)
T ss_dssp             SSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB----CCGGGSTT---TCT
T ss_pred             CCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc----cChhhhhc---cCC
Confidence            764 223331    357888888888765     1122       23388888886553222    112222 3   578


Q ss_pred             ccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEE
Q 009416          370 KFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSI  449 (535)
Q Consensus       370 ~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l  449 (535)
                      +|+ .|.++.+.+.  .+|.     .+..+++|++|+++.+.     ..   ..+.+   ...++. .+..+++|+.|.+
T Consensus       514 ~L~-~L~Ls~N~l~--~ip~-----~~~~l~~L~~L~Ls~N~-----~l---s~N~l---~~~~p~-~l~~l~~L~~L~L  573 (636)
T 4eco_A          514 YLV-GIDLSYNSFS--KFPT-----QPLNSSTLKGFGIRNQR-----DA---QGNRT---LREWPE-GITLCPSLTQLQI  573 (636)
T ss_dssp             TCC-EEECCSSCCS--SCCC-----GGGGCSSCCEEECCSCB-----CT---TCCBC---CCCCCT-TGGGCSSCCEEEC
T ss_pred             CcC-EEECCCCCCC--CcCh-----hhhcCCCCCEEECCCCc-----cc---ccCcc---cccChH-HHhcCCCCCEEEC
Confidence            888 8888877777  3676     55567888888885211     00   00010   011222 4455688888888


Q ss_pred             eecC
Q 009416          450 EHGH  453 (535)
Q Consensus       450 ~~~~  453 (535)
                      ..+.
T Consensus       574 s~N~  577 (636)
T 4eco_A          574 GSND  577 (636)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            7554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=2.4e-17  Score=177.14  Aligned_cols=218  Identities=9%  Similarity=-0.024  Sum_probs=147.7

Q ss_pred             eCCCCCccEEEEeec--CCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHH-HHHhcCCCCCc
Q 009416          204 LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEW-LCNGISKLPLL  279 (535)
Q Consensus       204 ~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~-l~~l~~~~~~L  279 (535)
                      +..+++|+.|++.+|  ..+..+  .+++|+.|++.++. ..  ...+..+++|+.|+++++.+++.. ....+..+++|
T Consensus       303 l~~~~~L~~L~l~~n~l~~lp~~--~l~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L  378 (606)
T 3vq2_A          303 VPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL  378 (606)
T ss_dssp             CCTTCCCSEEEEESCCCSSCCCC--CCSSCCEEEEESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred             ccccccCCEEEcccccCcccccC--CCCccceeeccCCcCcc--chhhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence            445578888888888  333322  78999999999885 22  336778999999999988876532 12225678999


Q ss_pred             cEEEeecCCCCccccc---CCCCCceEEeccCccccc----ccccCCceeeEEEcCcch-----hhcccCcccceeEEEE
Q 009416          280 EYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQ----VEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCF  347 (535)
Q Consensus       280 ~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~----l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~  347 (535)
                      +.|+++++. +..++.   ..++|+.|+++++.-...    .....++|+.|.++++..     ..+.++++|+.|+++.
T Consensus       379 ~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  457 (606)
T 3vq2_A          379 RHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG  457 (606)
T ss_dssp             CEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred             cEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence            999999875 333432   457899999988754321    223567899999988765     4577889999998865


Q ss_pred             ecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccc
Q 009416          348 SSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSR  427 (535)
Q Consensus       348 ~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  427 (535)
                      +....   ..++..++   .+++|+ .|.++.+.+. ...|.     .+..+++|++|+++.+.                
T Consensus       458 n~l~~---~~~~~~~~---~l~~L~-~L~Ls~n~l~-~~~~~-----~~~~l~~L~~L~Ls~N~----------------  508 (606)
T 3vq2_A          458 NSFKD---NTLSNVFA---NTTNLT-FLDLSKCQLE-QISWG-----VFDTLHRLQLLNMSHNN----------------  508 (606)
T ss_dssp             CEEGG---GEECSCCT---TCTTCC-EEECTTSCCC-EECTT-----TTTTCTTCCEEECCSSC----------------
T ss_pred             CcCCC---cchHHhhc---cCCCCC-EEECCCCcCC-ccChh-----hhcccccCCEEECCCCc----------------
Confidence            42221   01344556   788999 8888866666 44455     56778899999986322                


Q ss_pred             cchhHHhhhhhccCcccceEEEeecCCCcc
Q 009416          428 FSIANVLDGLLWTSPHAEMVSIEHGHLHKF  457 (535)
Q Consensus       428 ~~l~~l~~~ll~~~p~Le~L~l~~~~~~~~  457 (535)
                        +..+....+..+++|++|.+..+....+
T Consensus       509 --l~~~~~~~~~~l~~L~~L~l~~N~l~~~  536 (606)
T 3vq2_A          509 --LLFLDSSHYNQLYSLSTLDCSFNRIETS  536 (606)
T ss_dssp             --CSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred             --CCCcCHHHccCCCcCCEEECCCCcCccc
Confidence              2222223566678899999886654444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=2.8e-17  Score=181.00  Aligned_cols=309  Identities=13%  Similarity=0.084  Sum_probs=210.2

Q ss_pred             hcCceEEEEeccCCCCc----------------cCCcccc--CCCceeEEEEeCccc--cCCCCcccCcccceeEeeeEe
Q 009416          113 ESEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKL--QQPSENVKLFSLRKLALREVC  172 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~----------------~lp~~l~--~~~~L~~L~L~~~~~--~~~~~~~~l~~L~~L~L~~~~  172 (535)
                      .++|+.|+|..+...+.                .+|..++  .+++|++|+|++|.+  ..|..++++++|++|+|++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            36899999998765541                2899888  999999999999986  344678899999999999997


Q ss_pred             -eChhHHHHHH-------hCCCcccEEEEeecCCCcee----eeCCCCCccEEEEeecCCccEEe--ecCCcccEEEEee
Q 009416          173 -ADDQAIASLI-------SGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQ  238 (535)
Q Consensus       173 -~~~~~l~~~~-------~~~p~Le~L~L~~c~~l~~~----~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~  238 (535)
                       ++...++..+       ..+|+|++|++++|... .+    .+..+++|+.|++++|.- ..++  ..+++|+.|++++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV-RHLEAFGTNVKLTDLKLDY  604 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC-CBCCCCCTTSEESEEECCS
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc-ccchhhcCCCcceEEECcC
Confidence             6652333323       35669999999999765 44    367789999999999832 2332  2678999999999


Q ss_pred             ecccCeEEecCcccc-cceeEeeccCCChHHHHHhcCCC--CCccEEEeecCCCCccccc--------CCCCCceEEecc
Q 009416          239 TYLFPIEVNVSSCGN-LKCLKFDFLPIEDEWLCNGISKL--PLLEYLSMTKCHKLTSVRI--------SSPCLKTLILEC  307 (535)
Q Consensus       239 ~~~~~~~~~~~~l~~-L~~L~L~~~~~~~~~l~~l~~~~--~~L~~L~L~~c~~l~~l~~--------~~~~L~~L~l~~  307 (535)
                      +....++..+..+++ |+.|++++|.+..  ++..+...  ++|+.|+++++...+.++.        ...+|+.|++++
T Consensus       605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~  682 (876)
T 4ecn_A          605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY  682 (876)
T ss_dssp             SCCSCCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred             CccccchHHHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence            984456667888998 9999999998872  23334444  3499999998765443321        234788888887


Q ss_pred             Cccccccc----ccCCceeeEEEcCcch-----hh-------cccCcccceeEEEEecccchhhHhHHHHH-hhhhcccc
Q 009416          308 CDKLIQVE----IETPNLSIFKYHGDLI-----SF-------SSNALSLSETSLCFSSHLMVNIEWVVEYF-EILAMFQK  370 (535)
Q Consensus       308 c~~L~~l~----~~~p~L~~L~~~g~~~-----~~-------~~~l~~L~~L~l~~~~~~~~~~~~l~~~l-~~~~~l~~  370 (535)
                      +.- ..+.    ...++|+.|.++++..     ..       ..++++|+.|+++.+....    ....+. .   .+++
T Consensus       683 N~L-~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~----lp~~l~~~---~l~~  754 (876)
T 4ecn_A          683 NEI-QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS----LSDDFRAT---TLPY  754 (876)
T ss_dssp             SCC-CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC----CCGGGSTT---TCTT
T ss_pred             CcC-CccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc----chHHhhhc---cCCC
Confidence            643 2333    2457889998888764     11       1234488998886653222    111222 3   5788


Q ss_pred             cceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEe
Q 009416          371 FSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIE  450 (535)
Q Consensus       371 L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~  450 (535)
                      |+ .|.|+.+.+.  .+|.     .+..+++|+.|+|+.++   +     +..+    .+.......+..+|+|+.|.+.
T Consensus       755 L~-~L~Ls~N~L~--~lp~-----~l~~L~~L~~L~Ls~N~---~-----ls~N----~l~~~ip~~l~~L~~L~~L~Ls  814 (876)
T 4ecn_A          755 LS-NMDVSYNCFS--SFPT-----QPLNSSQLKAFGIRHQR---D-----AEGN----RILRQWPTGITTCPSLIQLQIG  814 (876)
T ss_dssp             CC-EEECCSSCCS--SCCC-----GGGGCTTCCEEECCCCB---C-----TTCC----BCCCCCCTTGGGCSSCCEEECC
T ss_pred             cC-EEEeCCCCCC--ccch-----hhhcCCCCCEEECCCCC---C-----cccc----cccccChHHHhcCCCCCEEECC
Confidence            89 8888877777  3676     55577889998886322   0     0001    1111111245567889988888


Q ss_pred             ecC
Q 009416          451 HGH  453 (535)
Q Consensus       451 ~~~  453 (535)
                      .+.
T Consensus       815 ~N~  817 (876)
T 4ecn_A          815 SND  817 (876)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.68  E-value=2.3e-17  Score=179.65  Aligned_cols=379  Identities=15%  Similarity=0.137  Sum_probs=180.2

Q ss_pred             cCceEEEEeccCCCCccCCccccCC--CceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYV--ESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~--~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le  189 (535)
                      .+++.|++..+.... ..|.++..+  ++|++|+|++|.+..  +..++.+++|++|++++|.+.... +..+.++++|+
T Consensus       222 ~~L~~L~L~~n~l~~-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~  299 (680)
T 1ziw_A          222 TSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLFNVR  299 (680)
T ss_dssp             SCCCEEECTTSCCCE-ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC-TTTTTTCTTCC
T ss_pred             ccccEEEccCCcccc-cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC-hhhhcCCCCcc
Confidence            466666666543221 223334444  236666666665521  134455666666666666543211 11234455555


Q ss_pred             EEEEe---------------------------------ecCCCcee--eeCCCCCccEEEEeecC-CccEEee------c
Q 009416          190 YLEIR---------------------------------SCEGLESL--DLVNLSNLKEIILVNTS-DIKRVEI------K  227 (535)
Q Consensus       190 ~L~L~---------------------------------~c~~l~~~--~~~~l~~L~~L~l~~c~-~l~~~~~------~  227 (535)
                      .|+++                                 +|...+..  .+.++++|++|++++|. ....+..      .
T Consensus       300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~  379 (680)
T 1ziw_A          300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA  379 (680)
T ss_dssp             EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred             EEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc
Confidence            55554                                 44321111  23334455555554441 1111111      1


Q ss_pred             CCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceE
Q 009416          228 TSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTL  303 (535)
Q Consensus       228 ~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L  303 (535)
                      .++|+.|+++++. ....+..+..+++|+.|++++|.+.+......+.++++|+.|+++++......+.   ..++|+.|
T Consensus       380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L  459 (680)
T 1ziw_A          380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL  459 (680)
T ss_dssp             TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred             cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence            2456666665554 2212234566777777777777765543333356677777777777642211111   34677777


Q ss_pred             EeccCcc--cccc---cccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhHhH----HHHHhhhhccc
Q 009416          304 ILECCDK--LIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWV----VEYFEILAMFQ  369 (535)
Q Consensus       304 ~l~~c~~--L~~l---~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~~l~~~~~l~  369 (535)
                      ++.++.-  +..+   ....++|+.|.++++..     ..+.++++|+.|+++.+.........+    ...+.   +++
T Consensus       460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~---~l~  536 (680)
T 1ziw_A          460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK---GLS  536 (680)
T ss_dssp             ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTT---TCT
T ss_pred             hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhc---CCC
Confidence            7766542  1111   12456788888877654     346778888888886553222000001    11245   688


Q ss_pred             ccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEE
Q 009416          370 KFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSI  449 (535)
Q Consensus       370 ~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l  449 (535)
                      +|+ .|.++.+.++  .+|+.    .+..+++|++|+++.                  ..+..++...|..+++|+.|.+
T Consensus       537 ~L~-~L~L~~N~l~--~i~~~----~~~~l~~L~~L~Ls~------------------N~l~~l~~~~~~~l~~L~~L~L  591 (680)
T 1ziw_A          537 HLH-ILNLESNGFD--EIPVE----VFKDLFELKIIDLGL------------------NNLNTLPASVFNNQVSLKSLNL  591 (680)
T ss_dssp             TCC-EEECCSSCCC--CCCTT----TTTTCTTCCEEECCS------------------SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCC-EEECCCCCCC--CCCHH----HcccccCcceeECCC------------------CCCCcCCHhHhCCCCCCCEEEC
Confidence            888 7777766666  45542    356778888888852                  2334455567778899999999


Q ss_pred             eecCCCcceeeehh---h--hhhhhcCCCCcc-ccC-CCcccccccccceeeeee-cceeecc----CCcccccceeeee
Q 009416          450 EHGHLHKFSFQISY---K--KQLIYDGEIPRC-CQS-LPVSCWQHCINEVKVEHT-KSLSITE----DGELQHDVRSYYC  517 (535)
Q Consensus       450 ~~~~~~~~~~~~~~---~--~~l~~~~~~~~~-~~~-~~~~~~~~~lk~v~i~~~-~~~~~~~----~~~~~~~~~~~~~  517 (535)
                      ..+.....+.....   .  +.+...+....| |.. .+...|.. -..+.+.++ ..+.|..    .|....+++...|
T Consensus       592 ~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~-~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~  670 (680)
T 1ziw_A          592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN-ETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC  670 (680)
T ss_dssp             TTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS-CC--------------------------------
T ss_pred             CCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH-hcCcccccccCCcEECCchHHCCCcccccChhhc
Confidence            86543333211110   0  112334455566 775 55555642 233444443 3455532    2344445555555


Q ss_pred             ecccch
Q 009416          518 FEGGED  523 (535)
Q Consensus       518 ~~~~~~  523 (535)
                      ....+.
T Consensus       671 ~~~~~~  676 (680)
T 1ziw_A          671 KDSAHH  676 (680)
T ss_dssp             ------
T ss_pred             CCCccC
Confidence            554443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.68  E-value=3.2e-17  Score=176.11  Aligned_cols=81  Identities=11%  Similarity=0.092  Sum_probs=42.5

Q ss_pred             cCceEEEEeccCCCCccC-CccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCccc-
Q 009416          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE-  189 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le-  189 (535)
                      +++++|++..+...  .+ |..+..+++|++|++++|.+...  +....+++|++|++++|.+.... ...++.+++|+ 
T Consensus       105 ~~L~~L~L~~n~i~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  181 (606)
T 3t6q_A          105 KALKHLFFIQTGIS--SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATN  181 (606)
T ss_dssp             TTCCEEECTTSCCS--CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC-HHHHHTTTTCCS
T ss_pred             ccccEeeccccCcc--cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC-hhhhhhhcccce
Confidence            35556655554322  22 23345566666666666665331  34444667777777666553221 22245566666 


Q ss_pred             -EEEEeecC
Q 009416          190 -YLEIRSCE  197 (535)
Q Consensus       190 -~L~L~~c~  197 (535)
                       .|++++|.
T Consensus       182 l~L~l~~n~  190 (606)
T 3t6q_A          182 LSLNLNGND  190 (606)
T ss_dssp             EEEECTTCC
T ss_pred             eEEecCCCc
Confidence             55555553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=2e-17  Score=182.11  Aligned_cols=102  Identities=13%  Similarity=0.135  Sum_probs=47.9

Q ss_pred             CCCcccEEEEeecCCCcee--eeCCCCCccEEEEeecCCccE--Ee----------ecCCcccEEEEeeecccCeEE--e
Q 009416          184 GCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKR--VE----------IKTSNVNALAIHQTYLFPIEV--N  247 (535)
Q Consensus       184 ~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~--~~----------~~~~~L~~L~l~~~~~~~~~~--~  247 (535)
                      .+++|++|+|++|...+.+  .+.++++|+.|++++|..+..  ++          ..+++|+.|+++++....++.  .
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~  568 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS  568 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence            4555555555555443333  244455555555555531211  11          022355555555555223344  4


Q ss_pred             cCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCC
Q 009416          248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       248 ~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~  288 (535)
                      ++++++|+.|++++|.+. . ++ .+..+++|+.|+++++.
T Consensus       569 l~~L~~L~~L~Ls~N~l~-~-lp-~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          569 LQKMVKLGLLDCVHNKVR-H-LE-AFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             HTTCTTCCEEECTTSCCC-B-CC-CCCTTSEESEEECCSSC
T ss_pred             hhcCCCCCEEECCCCCcc-c-ch-hhcCCCcceEEECcCCc
Confidence            555555555555555544 1 11 24455555555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.67  E-value=2.4e-17  Score=177.15  Aligned_cols=277  Identities=14%  Similarity=0.109  Sum_probs=154.7

Q ss_pred             ceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCce--eeeCCCCCccEEEE
Q 009416          140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIIL  215 (535)
Q Consensus       140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~--~~~~~l~~L~~L~l  215 (535)
                      +|++|++++|.+...  ..+..+++|++|+++++.++  .++..+..+++|++|++++|...+.  ..+..+++|++|++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence            566666666655322  22455666666666666553  1222245556666666666543221  13444566666666


Q ss_pred             eecCCccEEe----ecCCcccEEEEeeecccCe---EEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCC
Q 009416          216 VNTSDIKRVE----IKTSNVNALAIHQTYLFPI---EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       216 ~~c~~l~~~~----~~~~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~  288 (535)
                      ++|.....+.    ..+++|+.|+++++.....   +..+..+++|+.|+++++.+.+..... +..+++|+.|+++++.
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTR  411 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTTCC
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCCCc
Confidence            6652221111    1456666666666551111   223556667777777666654432222 4556677777776654


Q ss_pred             CCccccc----CCCCCceEEeccCcccc---cccccCCceeeEEEcCcch--------hhcccCcccceeEEEEecccch
Q 009416          289 KLTSVRI----SSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI--------SFSSNALSLSETSLCFSSHLMV  353 (535)
Q Consensus       289 ~l~~l~~----~~~~L~~L~l~~c~~L~---~l~~~~p~L~~L~~~g~~~--------~~~~~l~~L~~L~l~~~~~~~~  353 (535)
                      .....+.    ..++|+.|+++++.--.   ......++|+.|.++++..        ..+.++++|+.|+++.+.... 
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-  490 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-  490 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-
Confidence            3222211    33566677766654221   1112356777777766643        246778899999887664333 


Q ss_pred             hhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHH
Q 009416          354 NIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANV  433 (535)
Q Consensus       354 ~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l  433 (535)
                         ..+..+.   .+++|+ .|.++.+.+. ...|+     .+..+++| +|+++.+.                  +..+
T Consensus       491 ---~~~~~~~---~l~~L~-~L~Ls~N~l~-~~~~~-----~l~~l~~L-~L~L~~N~------------------l~~~  538 (606)
T 3t6q_A          491 ---IDQHAFT---SLKMMN-HVDLSHNRLT-SSSIE-----ALSHLKGI-YLNLASNH------------------ISII  538 (606)
T ss_dssp             ---ECTTTTT---TCTTCC-EEECCSSCCC-GGGGG-----GGTTCCSC-EEECCSSC------------------CCCC
T ss_pred             ---cChhhhc---cccCCC-EEECCCCccC-cCChh-----HhCccccc-EEECcCCc------------------cccc
Confidence               2244456   789999 8888877776 45555     56677778 77775221                  2223


Q ss_pred             hhhhhccCcccceEEEeec
Q 009416          434 LDGLLWTSPHAEMVSIEHG  452 (535)
Q Consensus       434 ~~~ll~~~p~Le~L~l~~~  452 (535)
                      +...+..+++|+.|.+..+
T Consensus       539 ~~~~~~~l~~L~~L~l~~N  557 (606)
T 3t6q_A          539 LPSLLPILSQQRTINLRQN  557 (606)
T ss_dssp             CGGGHHHHHTSSEEECTTC
T ss_pred             CHhhcccCCCCCEEeCCCC
Confidence            3335666789999999844

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.67  E-value=1e-17  Score=180.51  Aligned_cols=302  Identities=10%  Similarity=0.054  Sum_probs=216.8

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCcc-ccC---CCCcccC------cccceeEeeeEeeChhHHHH--
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCK-LQQ---PSENVKL------FSLRKLALREVCADDQAIAS--  180 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-~~~---~~~~~~l------~~L~~L~L~~~~~~~~~l~~--  180 (535)
                      .++++.|++..+... ..+|..++.+++|++|++++|. +..   |..++.+      ++|++|++++|.++  .++.  
T Consensus       248 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~  324 (636)
T 4eco_A          248 LKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVET  324 (636)
T ss_dssp             CTTCCEEEEECCTTC-SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHH
T ss_pred             cCCCCEEEecCCcCC-ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchh
Confidence            468999999987643 3789999999999999999998 642   3445554      99999999999886  3333  


Q ss_pred             HHhCCCcccEEEEeecCCCcee-eeCCCCCccEEEEeecCCccEEe---ecCCc-ccEEEEeeecccCeEEecCccc--c
Q 009416          181 LISGCPLIEYLEIRSCEGLESL-DLVNLSNLKEIILVNTSDIKRVE---IKTSN-VNALAIHQTYLFPIEVNVSSCG--N  253 (535)
Q Consensus       181 ~~~~~p~Le~L~L~~c~~l~~~-~~~~l~~L~~L~l~~c~~l~~~~---~~~~~-L~~L~l~~~~~~~~~~~~~~l~--~  253 (535)
                      .++.+++|++|++++|...+.+ .+..+++|+.|++++|. +..++   ..+++ |+.|+++++....++..+...+  +
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~  403 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV  403 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred             hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence            5789999999999999765444 45556899999999882 22222   25677 9999999998335555555544  8


Q ss_pred             cceeEeeccCCChHHHHHhcC-------CCCCccEEEeecCCCCccccc----CCCCCceEEeccCccccccccc----C
Q 009416          254 LKCLKFDFLPIEDEWLCNGIS-------KLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEIE----T  318 (535)
Q Consensus       254 L~~L~L~~~~~~~~~l~~l~~-------~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l~~~----~  318 (535)
                      |+.|++++|.+.+..+.. +.       .+++|+.|+++++.. +.++.    ..++|+.|+++++.- ..+...    .
T Consensus       404 L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~  480 (636)
T 4eco_A          404 MSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDE  480 (636)
T ss_dssp             EEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEET
T ss_pred             cCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCCCC-CCcCHHHhccc
Confidence            999999999988755444 33       667999999999653 35554    367899999987643 233321    1


Q ss_pred             -------CceeeEEEcCcch----hhcc--cCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEE------e
Q 009416          319 -------PNLSIFKYHGDLI----SFSS--NALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQ------C  379 (535)
Q Consensus       319 -------p~L~~L~~~g~~~----~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~------~  379 (535)
                             ++|+.|.++++..    ..+.  ++++|+.|+++.+....     ++..+.   .+++|+ .|.++      .
T Consensus       481 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~---~l~~L~-~L~Ls~N~~ls~  551 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPL---NSSTLK-GFGIRNQRDAQG  551 (636)
T ss_dssp             TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGG---GCSSCC-EEECCSCBCTTC
T ss_pred             cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-----cChhhh---cCCCCC-EEECCCCccccc
Confidence                   2899999988766    3343  88999999997653322     344456   799999 88885      2


Q ss_pred             eccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecCCCcc
Q 009416          380 REGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKF  457 (535)
Q Consensus       380 ~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~~~~~  457 (535)
                      +.+. ..+|+     .+..+++|++|+|+.+.                  +..++..+.   ++|+.|.+..++...+
T Consensus       552 N~l~-~~~p~-----~l~~l~~L~~L~Ls~N~------------------l~~ip~~~~---~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          552 NRTL-REWPE-----GITLCPSLTQLQIGSND------------------IRKVNEKIT---PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CBCC-CCCCT-----TGGGCSSCCEEECCSSC------------------CCBCCSCCC---TTCCEEECCSCTTCEE
T ss_pred             Cccc-ccChH-----HHhcCCCCCEEECCCCc------------------CCccCHhHh---CcCCEEECcCCCCccc
Confidence            3444 56676     66778999999997322                  223333322   7999999997664444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.67  E-value=7.9e-17  Score=179.44  Aligned_cols=173  Identities=15%  Similarity=0.080  Sum_probs=120.9

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--C-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--Q-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le  189 (535)
                      .++++.|+++.+.... -.|..+..+++|++|+|++|...  . +..+.++++|++|+|++|.+.... +..+.++++|+
T Consensus        23 p~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~  100 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFHLF  100 (844)
T ss_dssp             CTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSSCC
T ss_pred             CCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCcccC
Confidence            4689999998865432 23566778899999999998442  2 356788999999999998874321 23467899999


Q ss_pred             EEEEeecCCCcee----eeCCCCCccEEEEeecCC--ccE--EeecCCcccEEEEeeec-ccCeEEecCcc--cccceeE
Q 009416          190 YLEIRSCEGLESL----DLVNLSNLKEIILVNTSD--IKR--VEIKTSNVNALAIHQTY-LFPIEVNVSSC--GNLKCLK  258 (535)
Q Consensus       190 ~L~L~~c~~l~~~----~~~~l~~L~~L~l~~c~~--l~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~l--~~L~~L~  258 (535)
                      +|+|++|...+..    .+..+++|++|++++|.-  +..  ....+++|+.|+++++. ....+..+..+  ++|+.|+
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            9999998754422    367789999999998832  211  11268899999998887 33334455555  7899999


Q ss_pred             eeccCCChHHHHHhcCCCC------CccEEEeecCC
Q 009416          259 FDFLPIEDEWLCNGISKLP------LLEYLSMTKCH  288 (535)
Q Consensus       259 L~~~~~~~~~l~~l~~~~~------~L~~L~L~~c~  288 (535)
                      ++.+.+.+..... +..++      .|+.|+++++.
T Consensus       181 L~~n~l~~~~~~~-~~~~~~~~~~~~L~~L~Ls~n~  215 (844)
T 3j0a_A          181 LAANSLYSRVSVD-WGKCMNPFRNMVLEILDVSGNG  215 (844)
T ss_dssp             ECCSBSCCCCCCC-CCSSSCTTTTCCBSEEBCSSCC
T ss_pred             CCCCccccccccc-hhhcCCccccCceeEEecCCCc
Confidence            9988776643322 23333      38999998763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.66  E-value=2.2e-17  Score=170.88  Aligned_cols=307  Identities=15%  Similarity=0.095  Sum_probs=201.4

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--C-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--Q-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      +++++|+++.+.... ..|..+..+++|++|+|++|.+.  . +..+..+++|++|+|++|.+.... +..+..+++|++
T Consensus        30 ~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE-TGAFNGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC-TTTTTTCTTCCE
T ss_pred             CccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC-hhhccCcccCCE
Confidence            578888888765432 23566778888999999888763  2 245678889999999888764321 223677888999


Q ss_pred             EEEeecCCCcee----eeCCCCCccEEEEeecC--CccEE--eecCCcccEEEEeeec-ccCeEEecCcc--cccceeEe
Q 009416          191 LEIRSCEGLESL----DLVNLSNLKEIILVNTS--DIKRV--EIKTSNVNALAIHQTY-LFPIEVNVSSC--GNLKCLKF  259 (535)
Q Consensus       191 L~L~~c~~l~~~----~~~~l~~L~~L~l~~c~--~l~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~l--~~L~~L~L  259 (535)
                      |++++|...+..    .+..+++|++|++++|.  .+...  ...+++|+.|+++++. ....+..+..+  ++|+.|++
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            999888754322    26667888999888882  22221  2267888888888877 33223334444  57788888


Q ss_pred             eccCCChHHH-------HHhcCCCCCccEEEeecCCCCccccc------CCCCCceEEeccCccccc------------c
Q 009416          260 DFLPIEDEWL-------CNGISKLPLLEYLSMTKCHKLTSVRI------SSPCLKTLILECCDKLIQ------------V  314 (535)
Q Consensus       260 ~~~~~~~~~l-------~~l~~~~~~L~~L~L~~c~~l~~l~~------~~~~L~~L~l~~c~~L~~------------l  314 (535)
                      +++.+.+...       ...+..+++|+.|+++++...+..+.      ...+|+.|++.++.....            .
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence            8776654211       11133567899999998765443332      236788888887643210            0


Q ss_pred             ---cccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeecccccc
Q 009416          315 ---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVI  386 (535)
Q Consensus       315 ---~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~  386 (535)
                         ....++|+.++++++..     ..+.++++|+.|+++.+....    ..+..+.   ++++|+ .|.++.+.+. ..
T Consensus       268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~---~l~~L~-~L~Ls~N~l~-~~  338 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK----IDDNAFW---GLTHLL-KLNLSQNFLG-SI  338 (455)
T ss_dssp             TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTT---TCTTCC-EEECCSSCCC-EE
T ss_pred             ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc----cChhHhc---CcccCC-EEECCCCccC-Cc
Confidence               01236899999988765     457788999999996553333    2244456   789999 8888866665 33


Q ss_pred             ccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecCC
Q 009416          387 VPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHL  454 (535)
Q Consensus       387 ~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~~  454 (535)
                      .|.     .+..+++|++|+++.+.                  +..+....+..+|+|+.|.+..+..
T Consensus       339 ~~~-----~~~~l~~L~~L~Ls~N~------------------l~~~~~~~~~~l~~L~~L~L~~N~l  383 (455)
T 3v47_A          339 DSR-----MFENLDKLEVLDLSYNH------------------IRALGDQSFLGLPNLKELALDTNQL  383 (455)
T ss_dssp             CGG-----GGTTCTTCCEEECCSSC------------------CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             Chh-----HhcCcccCCEEECCCCc------------------ccccChhhccccccccEEECCCCcc
Confidence            344     56678899999996322                  2223233566779999999986553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.66  E-value=3.4e-17  Score=166.04  Aligned_cols=265  Identities=15%  Similarity=0.143  Sum_probs=125.4

Q ss_pred             cCceEEEEeccCCCCccCCccc-cCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLPEII-FYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      .+++.+++..+.  ...+|..+ ..+++|++|+|++|.+...  ..+..+++|++|++++|.++... +..++.+++|++
T Consensus        45 ~~l~~l~l~~~~--l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  121 (390)
T 3o6n_A           45 NNQKIVTFKNST--MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTV  121 (390)
T ss_dssp             CCCSEEEEESCE--ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             CCceEEEecCCc--hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-HHHhcCCCCCCE
Confidence            456666665543  22455442 3456666666666655221  34556666666666666553211 122455666666


Q ss_pred             EEEeecCCCcee---eeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeecccCeEEecCcccccceeEeeccC
Q 009416          191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP  263 (535)
Q Consensus       191 L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~  263 (535)
                      |++++|... .+   .+..+++|++|++++|. +..+.    ..+++|+.|+++++....  ..+..+++|+.|+++++.
T Consensus       122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH--VDLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB--CCGGGCTTCSEEECCSSC
T ss_pred             EECCCCccC-cCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc--cccccccccceeeccccc
Confidence            666666432 22   13445666666666551 11111    134556666665554111  124455566666665555


Q ss_pred             CChHHHHHhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccc-cccccCCceeeEEEcCcch-----hhccc
Q 009416          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI-----SFSSN  336 (535)
Q Consensus       264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~-~l~~~~p~L~~L~~~g~~~-----~~~~~  336 (535)
                      +..      +...++|+.|+++++.. ..++. ..++|+.|++.++.--. ......++|+.|.++++..     ..+.+
T Consensus       198 l~~------~~~~~~L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          198 LST------LAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             CSE------EECCSSCSEEECCSSCC-CEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             ccc------cCCCCcceEEECCCCee-eeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence            443      22334566666655432 22222 23455555555442110 0112334555555555443     23445


Q ss_pred             CcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416          337 ALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS  408 (535)
Q Consensus       337 l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~  408 (535)
                      +++|+.|+++.+....     ++....   .+++|+ .|.++.+.+.  .+|+     .+..+++|++|+++
T Consensus       271 l~~L~~L~L~~n~l~~-----~~~~~~---~l~~L~-~L~L~~n~l~--~~~~-----~~~~l~~L~~L~L~  326 (390)
T 3o6n_A          271 MQRLERLYISNNRLVA-----LNLYGQ---PIPTLK-VLDLSHNHLL--HVER-----NQPQFDRLENLYLD  326 (390)
T ss_dssp             CSSCCEEECCSSCCCE-----EECSSS---CCTTCC-EEECCSSCCC--CCGG-----GHHHHTTCSEEECC
T ss_pred             cccCCEEECCCCcCcc-----cCcccC---CCCCCC-EEECCCCcce--ecCc-----cccccCcCCEEECC
Confidence            5556665554332111     111113   455566 5555544443  3343     23344556666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.66  E-value=4.8e-17  Score=174.77  Aligned_cols=257  Identities=14%  Similarity=0.142  Sum_probs=197.3

Q ss_pred             ccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEE
Q 009416          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (535)
Q Consensus       135 l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~  214 (535)
                      +..+++|+.|+++++.+...+.+..+++|++|++++|.++  .++. + .+++|++|++++|.......+..+++|++|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--cccc-C-CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            5667999999999998865567888999999999999883  2333 3 8999999999999887777788899999999


Q ss_pred             EeecCCccEE---e---ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCC
Q 009416          215 LVNTSDIKRV---E---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       215 l~~c~~l~~~---~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~  288 (535)
                      +++|. +...   .   ..+++|+.|+++++.....+..+.++++|+.|+++++.+.+......+.++++|+.|++++|.
T Consensus       357 ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  435 (606)
T 3vq2_A          357 LSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN  435 (606)
T ss_dssp             CCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred             CcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence            99883 2222   1   268999999999988333456788999999999999887766543447789999999999987


Q ss_pred             CCccccc---CCCCCceEEeccCccccc-c---cccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhH
Q 009416          289 KLTSVRI---SSPCLKTLILECCDKLIQ-V---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIE  356 (535)
Q Consensus       289 ~l~~l~~---~~~~L~~L~l~~c~~L~~-l---~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~  356 (535)
                      ..+..+.   ..++|+.|+++++.-... +   ....++|+.|.++++..     ..+.++++|+.|+++.+....    
T Consensus       436 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----  511 (606)
T 3vq2_A          436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF----  511 (606)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC----
T ss_pred             CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC----
Confidence            5554443   457899999998854321 2   23568999999998865     457889999999997764443    


Q ss_pred             hHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcc-cceeeEEEEee
Q 009416          357 WVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLT-SVKKLNYSVRT  411 (535)
Q Consensus       357 ~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~-~L~~L~l~~~~  411 (535)
                      ..+..+.   ++++|+ .|.++.+.++  .+|+     .+..++ +|++|++...+
T Consensus       512 ~~~~~~~---~l~~L~-~L~l~~N~l~--~~p~-----~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          512 LDSSHYN---QLYSLS-TLDCSFNRIE--TSKG-----ILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             EEGGGTT---TCTTCC-EEECTTSCCC--CEES-----CGGGSCTTCCEEECCSCC
T ss_pred             cCHHHcc---CCCcCC-EEECCCCcCc--ccCH-----hHhhhcccCcEEEccCCC
Confidence            3355566   799999 8888877776  6776     444554 69999997554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.66  E-value=4.8e-17  Score=174.17  Aligned_cols=282  Identities=12%  Similarity=0.048  Sum_probs=161.9

Q ss_pred             hcCceEEEEeccCCC--CccCCccc------------cCCCceeEEEEeCccccCC--CCccc-Ccc-cceeEeeeEe-e
Q 009416          113 ESEVKELVLVHWRSE--RRNLPEII------------FYVESLHVLELSYCKLQQP--SENVK-LFS-LRKLALREVC-A  173 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~--~~~lp~~l------------~~~~~L~~L~L~~~~~~~~--~~~~~-l~~-L~~L~L~~~~-~  173 (535)
                      .++++.|++..+...  ...+|...            ..+++|++|+|++|.+...  ..+.. ++. |++|+|++|. +
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~  151 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF  151 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence            467888888764320  11122111            1578888888888765321  22222 444 8888887765 3


Q ss_pred             ChhHHHHHHhCCCcccEEEEeecCCCce----e--eeCCCCCccEEEEeecCC---------------------------
Q 009416          174 DDQAIASLISGCPLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNTSD---------------------------  220 (535)
Q Consensus       174 ~~~~l~~~~~~~p~Le~L~L~~c~~l~~----~--~~~~l~~L~~L~l~~c~~---------------------------  220 (535)
                      +...+..+...||+|++|+|++|...+.    +  ....+++|++|+++++..                           
T Consensus       152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            5555666666778888888777742111    0  112245555555544411                           


Q ss_pred             ---ccEEeecCCcccEEEEeeec-c---cCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCcc-
Q 009416          221 ---IKRVEIKTSNVNALAIHQTY-L---FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS-  292 (535)
Q Consensus       221 ---l~~~~~~~~~L~~L~l~~~~-~---~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~-  292 (535)
                         +......+++|+.|.+.+.. .   ......+..+++|+.|.++.+  ....+..++..+++|++|++++|. +.. 
T Consensus       232 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~  308 (592)
T 3ogk_B          232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM--GPNEMPILFPFAAQIRKLDLLYAL-LETE  308 (592)
T ss_dssp             GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC--CTTTGGGGGGGGGGCCEEEETTCC-CCHH
T ss_pred             HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc--chhHHHHHHhhcCCCcEEecCCCc-CCHH
Confidence               11111133445555544322 0   122335667889999988764  333455567789999999999987 332 


Q ss_pred             -c---ccCCCCCceEEeccCcc---cccccccCCceeeEEEc-C---------cch-------hhcccCcccceeEEEEe
Q 009416          293 -V---RISSPCLKTLILECCDK---LIQVEIETPNLSIFKYH-G---------DLI-------SFSSNALSLSETSLCFS  348 (535)
Q Consensus       293 -l---~~~~~~L~~L~l~~c~~---L~~l~~~~p~L~~L~~~-g---------~~~-------~~~~~l~~L~~L~l~~~  348 (535)
                       +   ...+++|+.|++.++-.   +..+...+++|+.|++. |         +..       ....++++|+.|++..+
T Consensus       309 ~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  388 (592)
T 3ogk_B          309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS  388 (592)
T ss_dssp             HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred             HHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence             1   13678999999984422   12233456899999999 3         322       23456899999999443


Q ss_pred             cccchhhHhHHHHHhhhhcccccceeEEEE----eeccccc----cccccccccCCCCcccceeeEEEE
Q 009416          349 SHLMVNIEWVVEYFEILAMFQKFSKVLNLQ----CREGENV----IVPQELRQIQSPPLTSVKKLNYSV  409 (535)
Q Consensus       349 ~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~----~~~l~~~----~~p~~~~~~~~~~l~~L~~L~l~~  409 (535)
                      ...   ...+..+..   ++++|+ .|.++    ++.++..    .++.     .+..+++|++|+++.
T Consensus       389 ~l~---~~~~~~l~~---~~~~L~-~L~l~~~~~~n~l~~~p~~~~~~~-----~~~~~~~L~~L~L~~  445 (592)
T 3ogk_B          389 DIT---NESLESIGT---YLKNLC-DFRLVLLDREERITDLPLDNGVRS-----LLIGCKKLRRFAFYL  445 (592)
T ss_dssp             CCC---HHHHHHHHH---HCCSCC-EEEEEECSCCSCCSSCCCHHHHHH-----HHHHCTTCCEEEEEC
T ss_pred             Ccc---HHHHHHHHh---hCCCCc-EEEEeecCCCccccCchHHHHHHH-----HHHhCCCCCEEEEec
Confidence            322   224444555   588899 88886    4444421    1211     233466777777754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.65  E-value=2.1e-16  Score=166.49  Aligned_cols=281  Identities=14%  Similarity=0.134  Sum_probs=159.3

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ++++.|++..+.... ..|..+..+++|++|+|++|.+...+.. .+++|++|++++|.+....++..++.+++|++|++
T Consensus        45 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L  122 (520)
T 2z7x_B           45 SKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL  122 (520)
T ss_dssp             TTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEE
T ss_pred             ccccEEecCCCccCC-cChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEe
Confidence            567777776654321 2245566677777777777766432222 67777777777776643222233566777777777


Q ss_pred             eecCCCceeeeCCCCCc--cEEEEeecCC--ccEE----------------------------e-ecCCcccEEEEeeec
Q 009416          194 RSCEGLESLDLVNLSNL--KEIILVNTSD--IKRV----------------------------E-IKTSNVNALAIHQTY  240 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L--~~L~l~~c~~--l~~~----------------------------~-~~~~~L~~L~l~~~~  240 (535)
                      ++|...+ ..+..+++|  +.|++.+|.-  ....                            . ..+++|+.+++.++.
T Consensus       123 ~~n~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  201 (520)
T 2z7x_B          123 STTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL  201 (520)
T ss_dssp             EESSCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred             cCcccch-hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence            7765332 334445555  7777766522  0000                            0 035566666666542


Q ss_pred             --------ccCeEEecCcccccceeEeeccCCChHHHHHhcC--CCCCccEEEeecCCCCcccccCC-------------
Q 009416          241 --------LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGIS--KLPLLEYLSMTKCHKLTSVRISS-------------  297 (535)
Q Consensus       241 --------~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~--~~~~L~~L~L~~c~~l~~l~~~~-------------  297 (535)
                              .+.+ ..+..+++|+.|+++++.+++..+..+..  ..++|+.|+++++...+.++...             
T Consensus       202 ~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~  280 (520)
T 2z7x_B          202 EDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI  280 (520)
T ss_dssp             STTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred             cccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence                    1111 14556666666666666665543333221  13466666666543222222211             


Q ss_pred             ---------------------CCCceEEeccCccccccc--ccCCceeeEEEcCcch-----hhcccCcccceeEEEEec
Q 009416          298 ---------------------PCLKTLILECCDKLIQVE--IETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS  349 (535)
Q Consensus       298 ---------------------~~L~~L~l~~c~~L~~l~--~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~  349 (535)
                                           .+|+.|+++++.- ..+.  ...++|+.|.++++..     ..+.++++|+.|+++.+.
T Consensus       281 l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  359 (520)
T 2z7x_B          281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ  359 (520)
T ss_dssp             EEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC
T ss_pred             ccccccceecchhhhhcccccCceeEEEcCCCcc-ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc
Confidence                                 2456666655542 2222  4567888888887764     456788889998887654


Q ss_pred             ccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEe
Q 009416          350 HLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVR  410 (535)
Q Consensus       350 ~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~  410 (535)
                      ...  ...++..+.   .+++|+ .|.++.+.+. ..+|..    .+..+++|++|+++.+
T Consensus       360 l~~--l~~~~~~~~---~l~~L~-~L~Ls~N~l~-~~l~~~----~~~~l~~L~~L~Ls~N  409 (520)
T 2z7x_B          360 LKE--LSKIAEMTT---QMKSLQ-QLDISQNSVS-YDEKKG----DCSWTKSLLSLNMSSN  409 (520)
T ss_dssp             CCB--HHHHHHHHT---TCTTCC-EEECCSSCCB-CCGGGC----SCCCCTTCCEEECCSS
T ss_pred             cCc--cccchHHHh---hCCCCC-EEECCCCcCC-cccccc----hhccCccCCEEECcCC
Confidence            332  224556667   889999 8888877666 335542    2445677888777644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.64  E-value=2e-15  Score=160.11  Aligned_cols=192  Identities=17%  Similarity=0.110  Sum_probs=136.5

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      ++++.|++..+.... ..|..+..+++|++|+|++|.+...  ..+..+++|++|++++|.+.... ...++.+++|++|
T Consensus        26 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCcEE
Confidence            578999988765331 2355678889999999999987432  45788999999999999885432 3346889999999


Q ss_pred             EEeecCCCc-e--eeeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccC
Q 009416          192 EIRSCEGLE-S--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP  263 (535)
Q Consensus       192 ~L~~c~~l~-~--~~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~  263 (535)
                      ++++|.... .  -.+.++++|++|++++|..+..+.    ..+++|+.|++.++. ....+..+..+++|+.|+++.+.
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            999986542 1  246678999999999986555554    267899999999887 43345567888899999998877


Q ss_pred             CChHHHHHhcCCCCCccEEEeecCCCCcc------cccCCCCCceEEeccC
Q 009416          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTS------VRISSPCLKTLILECC  308 (535)
Q Consensus       264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~------l~~~~~~L~~L~l~~c  308 (535)
                      .... ...++..+++|+.|+++++...+.      +.....+|+.|++.++
T Consensus       184 ~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n  233 (549)
T 2z81_A          184 SAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS  233 (549)
T ss_dssp             STTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred             cccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence            6532 333345688999999988643221      1112456666666544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=7.2e-17  Score=172.84  Aligned_cols=79  Identities=15%  Similarity=0.168  Sum_probs=33.8

Q ss_pred             CCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccE
Q 009416          138 VESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKE  212 (535)
Q Consensus       138 ~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~  212 (535)
                      +++|++|+|++|.+...  ..+..+++|++|+|++|.++.. .+..++.+++|++|+|++|... .+   .+..+++|++
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~  151 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT  151 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCE
Confidence            45555555555544211  2344455555555555444221 1112344555555555554322 11   1233445555


Q ss_pred             EEEeec
Q 009416          213 IILVNT  218 (535)
Q Consensus       213 L~l~~c  218 (535)
                      |++++|
T Consensus       152 L~Ls~N  157 (597)
T 3oja_B          152 LSMSNN  157 (597)
T ss_dssp             EECCSS
T ss_pred             EEeeCC
Confidence            555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.63  E-value=3.7e-17  Score=175.09  Aligned_cols=333  Identities=16%  Similarity=0.131  Sum_probs=217.2

Q ss_pred             CceeEEEEEEecCCCCCChhhHHHHHHHHHhcCceEEEEeccC-CCCccCCccccCCCceeEEEEeCccccCC------C
Q 009416           83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SERRNLPEIIFYVESLHVLELSYCKLQQP------S  155 (535)
Q Consensus        83 ~~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~-~~~~~lp~~l~~~~~L~~L~L~~~~~~~~------~  155 (535)
                      ..++.+.++....    ....+.. +. ...++++.|++..|. .....++.....|++|++|+|++|.+...      .
T Consensus       105 ~~L~~L~L~~~~~----~~~~~~~-l~-~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B          105 TWLEEIRLKRMVV----TDDCLEL-IA-KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             TTCCEEEEESCBC----CHHHHHH-HH-HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred             CCCCeEEeeCcEE----cHHHHHH-HH-HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence            5788888874321    1111111 11 125799999999873 33333555556799999999999986432      2


Q ss_pred             CcccCcccceeEeeeEe--eChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEEEeec-------------
Q 009416          156 ENVKLFSLRKLALREVC--ADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT-------------  218 (535)
Q Consensus       156 ~~~~l~~L~~L~L~~~~--~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c-------------  218 (535)
                      ....+++|++|+++++.  ++...+..++..||+|++|++.+|..++.+  .+..+++|+.|.+..|             
T Consensus       179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~  258 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS  258 (594)
T ss_dssp             SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred             HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence            23467899999999886  566778888888999999999998554433  2334567777764433             


Q ss_pred             ------CCccEE--------------eecCCcccEEEEeeec-c-cCeEEecCcccccceeEeeccCCChHHHHHhcCCC
Q 009416          219 ------SDIKRV--------------EIKTSNVNALAIHQTY-L-FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKL  276 (535)
Q Consensus       219 ------~~l~~~--------------~~~~~~L~~L~l~~~~-~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~  276 (535)
                            ..+..+              ...+++|++|+++++. . ......+..+++|+.|+++++ +.+..+..+...+
T Consensus       259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~  337 (594)
T 2p1m_B          259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC  337 (594)
T ss_dssp             HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred             HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence                  222222              1146899999999887 1 112223568899999999988 6666777767779


Q ss_pred             CCccEEEeec--------CCCCcccc-----cCCCCCceEEeccCcccc-----cccccCCceeeEEEc--C---cch--
Q 009416          277 PLLEYLSMTK--------CHKLTSVR-----ISSPCLKTLILECCDKLI-----QVEIETPNLSIFKYH--G---DLI--  331 (535)
Q Consensus       277 ~~L~~L~L~~--------c~~l~~l~-----~~~~~L~~L~l~~c~~L~-----~l~~~~p~L~~L~~~--g---~~~--  331 (535)
                      ++|++|++.+        |..++...     ..+++|++|.+ .|.++.     .+....|+|+.|++.  +   +..  
T Consensus       338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~  416 (594)
T 2p1m_B          338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT  416 (594)
T ss_dssp             TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred             CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence            9999999954        33333221     24689999955 555552     222247899999998  3   111  


Q ss_pred             ---------hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccc
Q 009416          332 ---------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSV  402 (535)
Q Consensus       332 ---------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L  402 (535)
                               ..+.++++|+.|+++.  ..  +...+..+..   .+++|+ .|.++.+.+....++.     ....+++|
T Consensus       417 ~~~~~~~~~~l~~~~~~L~~L~L~~--~l--~~~~~~~l~~---~~~~L~-~L~L~~~~i~~~~~~~-----l~~~~~~L  483 (594)
T 2p1m_B          417 LEPLDIGFGAIVEHCKDLRRLSLSG--LL--TDKVFEYIGT---YAKKME-MLSVAFAGDSDLGMHH-----VLSGCDSL  483 (594)
T ss_dssp             CCCTHHHHHHHHHHCTTCCEEECCS--SC--CHHHHHHHHH---HCTTCC-EEEEESCCSSHHHHHH-----HHHHCTTC
T ss_pred             CCchhhHHHHHHhhCCCccEEeecC--cc--cHHHHHHHHH---hchhcc-EeeccCCCCcHHHHHH-----HHhcCCCc
Confidence                     1256789999999943  11  1224445555   589999 9999866665333322     11347899


Q ss_pred             eeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecC
Q 009416          403 KKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGH  453 (535)
Q Consensus       403 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~  453 (535)
                      ++|+|+.++           ..+  .++..    +...+|+|+.|.+..++
T Consensus       484 ~~L~L~~n~-----------~~~--~~~~~----~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          484 RKLEIRDCP-----------FGD--KALLA----NASKLETMRSLWMSSCS  517 (594)
T ss_dssp             CEEEEESCS-----------CCH--HHHHH----TGGGGGGSSEEEEESSC
T ss_pred             CEEECcCCC-----------CcH--HHHHH----HHHhCCCCCEEeeeCCC
Confidence            999998554           111  12222    55677999999999664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.63  E-value=5.6e-16  Score=153.01  Aligned_cols=207  Identities=19%  Similarity=0.232  Sum_probs=136.4

Q ss_pred             CCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEE
Q 009416          138 VESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII  214 (535)
Q Consensus       138 ~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~  214 (535)
                      .+++++|+|+++.+. .++.++.+++|++|+|++|.+.  .++..+..+++|++|++++|... .+  .+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            478999999999884 4466888999999999999885  23444678999999999999654 33  466789999999


Q ss_pred             EeecCCccEEee------------cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEE
Q 009416          215 LVNTSDIKRVEI------------KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL  282 (535)
Q Consensus       215 l~~c~~l~~~~~------------~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L  282 (535)
                      +++|.....++.            .+++|+.|+++++....++..+..+++|+.|++++|.+.+. +. .+..+++|+.|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l-~~-~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GP-AIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC-CG-GGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC-ch-hhccCCCCCEE
Confidence            999854444332            36778888887777334555677777777777777776641 11 25567777777


Q ss_pred             EeecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEecccchhhHhHH
Q 009416          283 SMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVV  359 (535)
Q Consensus       283 ~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~  359 (535)
                      ++++|...+.++.   ..++|+.|++++|..+..+.                ..+.++++|+.|+++.|...+    .++
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----------------~~~~~l~~L~~L~L~~n~~~~----~iP  294 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----------------LDIHRLTQLEKLDLRGCVNLS----RLP  294 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC----------------TTGGGCTTCCEEECTTCTTCC----CCC
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc----------------hhhhcCCCCCEEeCCCCCchh----hcc
Confidence            7777666555543   23455555555554332221                123455556666555443333    334


Q ss_pred             HHHhhhhcccccc
Q 009416          360 EYFEILAMFQKFS  372 (535)
Q Consensus       360 ~~l~~~~~l~~L~  372 (535)
                      ..+.   ++++++
T Consensus       295 ~~l~---~L~~L~  304 (328)
T 4fcg_A          295 SLIA---QLPANC  304 (328)
T ss_dssp             GGGG---GSCTTC
T ss_pred             HHHh---hccCce
Confidence            4444   555555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.63  E-value=1.9e-16  Score=160.55  Aligned_cols=274  Identities=13%  Similarity=0.094  Sum_probs=196.8

Q ss_pred             CCCceeEEEEeCccccCCC--CcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccE
Q 009416          137 YVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKE  212 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~  212 (535)
                      ..++++.|+++++.+...+  .+..+++|++|+++++.+.... ...+..+++|++|++++|......  .+..+++|++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccC-hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            4689999999999884332  2578999999999999874321 123678999999999999743322  3567899999


Q ss_pred             EEEeecCCccEEe----ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416          213 IILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       213 L~l~~c~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      |++++| .+..++    ..+++|++|+++++. ....+..+..+++|+.|+++++.+....    +..+++|+.|++.++
T Consensus       122 L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          122 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYN  196 (390)
T ss_dssp             EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSS
T ss_pred             EECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeecccc
Confidence            999998 222333    257899999999987 3332345788999999999999887643    456899999999986


Q ss_pred             CCCcccccCCCCCceEEeccCccccccc-ccCCceeeEEEcCcch---hhcccCcccceeEEEEecccchhhHhHHHHHh
Q 009416          288 HKLTSVRISSPCLKTLILECCDKLIQVE-IETPNLSIFKYHGDLI---SFSSNALSLSETSLCFSSHLMVNIEWVVEYFE  363 (535)
Q Consensus       288 ~~l~~l~~~~~~L~~L~l~~c~~L~~l~-~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~  363 (535)
                      . ++.++ ...+|+.|+++++.- ..+. ...++|+.|.+.++..   ..+.++++|+.|+++.+....    ..+..+.
T Consensus       197 ~-l~~~~-~~~~L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~~~  269 (390)
T 3o6n_A          197 L-LSTLA-IPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK----IMYHPFV  269 (390)
T ss_dssp             C-CSEEE-CCSSCSEEECCSSCC-CEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE----EESGGGT
T ss_pred             c-ccccC-CCCcceEEECCCCee-eeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC----cChhHcc
Confidence            3 33332 235899999987643 2222 2346899999998876   567889999999997664333    2344556


Q ss_pred             hhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcc
Q 009416          364 ILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPH  443 (535)
Q Consensus       364 ~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~  443 (535)
                         .+++|+ .|.++.+.++  .+|.     ....+++|++|+++.+.                  +..++. .+..+++
T Consensus       270 ---~l~~L~-~L~L~~n~l~--~~~~-----~~~~l~~L~~L~L~~n~------------------l~~~~~-~~~~l~~  319 (390)
T 3o6n_A          270 ---KMQRLE-RLYISNNRLV--ALNL-----YGQPIPTLKVLDLSHNH------------------LLHVER-NQPQFDR  319 (390)
T ss_dssp             ---TCSSCC-EEECCSSCCC--EEEC-----SSSCCTTCCEEECCSSC------------------CCCCGG-GHHHHTT
T ss_pred             ---ccccCC-EEECCCCcCc--ccCc-----ccCCCCCCCEEECCCCc------------------ceecCc-cccccCc
Confidence               799999 8888877666  4555     55678899999997322                  122222 2344589


Q ss_pred             cceEEEeecC
Q 009416          444 AEMVSIEHGH  453 (535)
Q Consensus       444 Le~L~l~~~~  453 (535)
                      |+.|.+..+.
T Consensus       320 L~~L~L~~N~  329 (390)
T 3o6n_A          320 LENLYLDHNS  329 (390)
T ss_dssp             CSEEECCSSC
T ss_pred             CCEEECCCCc
Confidence            9999998654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.62  E-value=1.3e-16  Score=169.88  Aligned_cols=183  Identities=16%  Similarity=0.145  Sum_probs=81.8

Q ss_pred             CCCccEEEEeec--CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEe
Q 009416          207 LSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM  284 (535)
Q Consensus       207 l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L  284 (535)
                      +++|+.|++.+|  ..+......+ +|++|++.++....++.  ..+++|+.|+++++........   ..+++|+.|++
T Consensus       281 l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l  354 (570)
T 2z63_A          281 LTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDL  354 (570)
T ss_dssp             GTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEEC
T ss_pred             cCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeC
Confidence            467777777776  2222222233 66666666665222221  3455566666655544332111   34555555555


Q ss_pred             ecCCCCccc--c---cCCCCCceEEeccCccc--ccccccCCceeeEEEcCcch------hhcccCcccceeEEEEeccc
Q 009416          285 TKCHKLTSV--R---ISSPCLKTLILECCDKL--IQVEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFSSHL  351 (535)
Q Consensus       285 ~~c~~l~~l--~---~~~~~L~~L~l~~c~~L--~~l~~~~p~L~~L~~~g~~~------~~~~~l~~L~~L~l~~~~~~  351 (535)
                      +++......  +   ...++|+.|+++++.-.  ..-....++|+.|.+.++..      ..+.++++|+.|+++.+...
T Consensus       355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  434 (570)
T ss_dssp             CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred             cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence            554322110  1   13345555555554321  00012334555555554432      13444555555555433222


Q ss_pred             chhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416          352 MVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS  408 (535)
Q Consensus       352 ~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~  408 (535)
                      .    ..+..+.   ++++|+ .|.++.+.+..+.+|.     .+..+++|++|+++
T Consensus       435 ~----~~~~~~~---~l~~L~-~L~l~~n~l~~~~~p~-----~~~~l~~L~~L~l~  478 (570)
T 2z63_A          435 V----AFNGIFN---GLSSLE-VLKMAGNSFQENFLPD-----IFTELRNLTFLDLS  478 (570)
T ss_dssp             E----CCTTTTT---TCTTCC-EEECTTCEEGGGEECS-----CCTTCTTCCEEECT
T ss_pred             c----cchhhhh---cCCcCc-EEECcCCcCccccchh-----hhhcccCCCEEECC
Confidence            1    1222333   455555 5555433333223443     44445555555553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.62  E-value=5.3e-16  Score=164.50  Aligned_cols=280  Identities=18%  Similarity=0.141  Sum_probs=144.7

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC-C-CcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-S-ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      ++++|++..+.... ..|..+..+++|++|+|++|.+... + .++.+++|++|++++|.+........++.+++|++|+
T Consensus        51 ~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  129 (549)
T 2z81_A           51 NLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR  129 (549)
T ss_dssp             TCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             cccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence            45555554433221 1123344445555555555544222 1 1444555555555555442211111234455555555


Q ss_pred             EeecCCCcee---eeCCCCCccEEEEeecC--------------------------CccEEee-cCCcccEEEEeeec-c
Q 009416          193 IRSCEGLESL---DLVNLSNLKEIILVNTS--------------------------DIKRVEI-KTSNVNALAIHQTY-L  241 (535)
Q Consensus       193 L~~c~~l~~~---~~~~l~~L~~L~l~~c~--------------------------~l~~~~~-~~~~L~~L~l~~~~-~  241 (535)
                      +++|..++.+   .+.++++|++|++++|.                          .+..... .+++|+.|+++++. .
T Consensus       130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  209 (549)
T 2z81_A          130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA  209 (549)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred             CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence            5555433333   23334445555554441                          1111001 35777888887776 2


Q ss_pred             cC-e-E-EecCcccccceeEeeccCCChHHHHH---hcCCCCCccEEEeecCCCCc--ccc-------cCC---------
Q 009416          242 FP-I-E-VNVSSCGNLKCLKFDFLPIEDEWLCN---GISKLPLLEYLSMTKCHKLT--SVR-------ISS---------  297 (535)
Q Consensus       242 ~~-~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~---l~~~~~~L~~L~L~~c~~l~--~l~-------~~~---------  297 (535)
                      +. . + .....+++|+.|+++++.+.+..+..   .+..+++|+.|++.+|...+  .++       ...         
T Consensus       210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  289 (549)
T 2z81_A          210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR  289 (549)
T ss_dssp             TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred             cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence            11 0 1 12234677888888877777654443   23556777888777753211  110       012         


Q ss_pred             --------------------CCCceEEeccCccccccc----ccCCceeeEEEcCcch--------hhcccCcccceeEE
Q 009416          298 --------------------PCLKTLILECCDKLIQVE----IETPNLSIFKYHGDLI--------SFSSNALSLSETSL  345 (535)
Q Consensus       298 --------------------~~L~~L~l~~c~~L~~l~----~~~p~L~~L~~~g~~~--------~~~~~l~~L~~L~l  345 (535)
                                          .+|+.|++.++. +..+.    ...++|+.|+++++..        ..++++++|+.|++
T Consensus       290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L  368 (549)
T 2z81_A          290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL  368 (549)
T ss_dssp             SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred             ccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence                                345555555432 22232    1367888888887765        12567788888888


Q ss_pred             EEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEE
Q 009416          346 CFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSV  409 (535)
Q Consensus       346 ~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~  409 (535)
                      +.+....  .......+.   .+++|+ .|.++.+.++  .+|+     .+..+++|++|+++.
T Consensus       369 s~N~l~~--~~~~~~~~~---~l~~L~-~L~Ls~N~l~--~lp~-----~~~~~~~L~~L~Ls~  419 (549)
T 2z81_A          369 SQNHLRS--MQKTGEILL---TLKNLT-SLDISRNTFH--PMPD-----SCQWPEKMRFLNLSS  419 (549)
T ss_dssp             TTSCCCC--HHHHHHHGG---GCTTCC-EEECTTCCCC--CCCS-----CCCCCTTCCEEECTT
T ss_pred             cCCcccc--cccchhhhh---cCCCCC-EEECCCCCCc--cCCh-----hhcccccccEEECCC
Confidence            6553332  001124456   789999 8888866666  5676     556677888888763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=170.32  Aligned_cols=155  Identities=16%  Similarity=0.161  Sum_probs=107.4

Q ss_pred             hcCceEEEEeccCCCCccC-CccccCCCceeEEEEeCcccc--CCCCcccCcccceeEeeeEeeChhHHH-HHHhCCCcc
Q 009416          113 ESEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIA-SLISGCPLI  188 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~-~~~~~~p~L  188 (535)
                      ..+|+.|+++.+.. ...+ |..+.++++|++|+|++|.+.  .+..+.++++|++|+|++|.+.+..+. ..+..+++|
T Consensus        47 l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           47 LEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             CCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             cccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            35899999987643 2344 566788899999999999873  346778899999999999887532221 236788999


Q ss_pred             cEEEEeecCCCcee---eeCCCCCccEEEEeecCC--ccEEee-cC--CcccEEEEeeec-ccCeEEecCcccc------
Q 009416          189 EYLEIRSCEGLESL---DLVNLSNLKEIILVNTSD--IKRVEI-KT--SNVNALAIHQTY-LFPIEVNVSSCGN------  253 (535)
Q Consensus       189 e~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~--l~~~~~-~~--~~L~~L~l~~~~-~~~~~~~~~~l~~------  253 (535)
                      ++|++++|...+..   .+.++++|++|++++|.-  ...-.+ .+  ++|+.|+++++. ....+..+..+++      
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~  205 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV  205 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence            99999998754321   467789999999998721  111111 22  788888888877 4444445555554      


Q ss_pred             cceeEeeccCCChHH
Q 009416          254 LKCLKFDFLPIEDEW  268 (535)
Q Consensus       254 L~~L~L~~~~~~~~~  268 (535)
                      |+.|+++++.+++..
T Consensus       206 L~~L~Ls~n~l~~~~  220 (844)
T 3j0a_A          206 LEILDVSGNGWTVDI  220 (844)
T ss_dssp             BSEEBCSSCCSSTTT
T ss_pred             eeEEecCCCcCchhH
Confidence            888888887665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.62  E-value=6.5e-16  Score=159.52  Aligned_cols=213  Identities=15%  Similarity=0.128  Sum_probs=108.5

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ++++.|++..+...  .+| .+..+++|++|+|++|.+...+ ++.+++|++|++++|.++..  +  ++.+++|++|++
T Consensus        42 ~~L~~L~Ls~n~l~--~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSIT--DMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCC--CCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcc--cCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee--e--cCCCCcCCEEEC
Confidence            46666666654433  234 4556666666666666654332 55666666666666665332  1  455666666666


Q ss_pred             eecCCCceeeeCCCCCccEEEEeecCCccEEee-cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHH
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~  271 (535)
                      ++|.. ..+.+..+++|++|++++|. +..+.+ .+++|+.|+++++. .+.+  .+..+++|+.|+++++.+++..   
T Consensus       114 ~~N~l-~~l~~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---  186 (457)
T 3bz5_A          114 DTNKL-TKLDVSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---  186 (457)
T ss_dssp             CSSCC-SCCCCTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---
T ss_pred             CCCcC-CeecCCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---
Confidence            66642 22445556666666666551 111222 45566666666553 2221  3555566666666665555421   


Q ss_pred             hcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCccccccc-ccCCceeeEEEcCcch--hhcccCcccceeE
Q 009416          272 GISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVE-IETPNLSIFKYHGDLI--SFSSNALSLSETS  344 (535)
Q Consensus       272 l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~-~~~p~L~~L~~~g~~~--~~~~~l~~L~~L~  344 (535)
                       +..+++|+.|+++++.- +.++. ..++|+.|+++++. +..+. ...++|+.|.++++..  ...+.+++|+.++
T Consensus       187 -l~~l~~L~~L~l~~N~l-~~~~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~  260 (457)
T 3bz5_A          187 -VSQNKLLNRLNCDTNNI-TKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH  260 (457)
T ss_dssp             -CTTCTTCCEEECCSSCC-SCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred             -cccCCCCCEEECcCCcC-CeeccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEe
Confidence             44555666666655432 22222 23455555555442 22222 1334555555555543  2233444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.60  E-value=9.3e-17  Score=166.46  Aligned_cols=322  Identities=15%  Similarity=0.114  Sum_probs=210.2

Q ss_pred             HHHhcCceEEEEeccCCCCc---cCCccccCCCceeEEEEeCccccCC--C-CcccCc----ccceeEeeeEeeCh---h
Q 009416          110 LAIESEVKELVLVHWRSERR---NLPEIIFYVESLHVLELSYCKLQQP--S-ENVKLF----SLRKLALREVCADD---Q  176 (535)
Q Consensus       110 ~~~~~~l~~L~L~~~~~~~~---~lp~~l~~~~~L~~L~L~~~~~~~~--~-~~~~l~----~L~~L~L~~~~~~~---~  176 (535)
                      ....++++.|++..+.....   .++..+..+++|++|+|++|.+...  . ....++    +|++|++++|.+++   .
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            34467999999998765432   4667777889999999999977321  1 112344    79999999998854   3


Q ss_pred             HHHHHHhCCCcccEEEEeecCCCce----e--e-eCCCCCccEEEEeecCCcc----EEe---ecCCcccEEEEeeec-c
Q 009416          177 AIASLISGCPLIEYLEIRSCEGLES----L--D-LVNLSNLKEIILVNTSDIK----RVE---IKTSNVNALAIHQTY-L  241 (535)
Q Consensus       177 ~l~~~~~~~p~Le~L~L~~c~~l~~----~--~-~~~l~~L~~L~l~~c~~l~----~~~---~~~~~L~~L~l~~~~-~  241 (535)
                      .+...+..+++|++|++++|..-..    +  . ....++|++|++++|.--.    .+.   ..+++|++|+++++. .
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            4566678999999999999874211    1  1 2224689999999882211    111   146899999999887 1


Q ss_pred             cCeEEecC-----cccccceeEeeccCCChHH---HHHhcCCCCCccEEEeecCCCCccc---------ccCCCCCceEE
Q 009416          242 FPIEVNVS-----SCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLTSV---------RISSPCLKTLI  304 (535)
Q Consensus       242 ~~~~~~~~-----~l~~L~~L~L~~~~~~~~~---l~~l~~~~~~L~~L~L~~c~~l~~l---------~~~~~~L~~L~  304 (535)
                      ......+.     ..++|+.|+++++.+++..   +...+..+++|++|+++++. ++..         ....++|++|+
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEE
Confidence            11111121     2458999999999888753   34445678999999999874 2221         11357899999


Q ss_pred             eccCccccc-----cc---ccCCceeeEEEcCcch-----hhc-----ccCcccceeEEEEecccchhhHhHHHHHhhhh
Q 009416          305 LECCDKLIQ-----VE---IETPNLSIFKYHGDLI-----SFS-----SNALSLSETSLCFSSHLMVNIEWVVEYFEILA  366 (535)
Q Consensus       305 l~~c~~L~~-----l~---~~~p~L~~L~~~g~~~-----~~~-----~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~  366 (535)
                      +++|. +..     +.   ...++|+.|+++++..     ..+     .+.++|+.|+++.|.........++..+.   
T Consensus       263 L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~---  338 (461)
T 1z7x_W          263 IWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA---  338 (461)
T ss_dssp             CTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH---
T ss_pred             CcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh---
Confidence            99883 322     22   2368999999998865     112     23368999999766433312334677777   


Q ss_pred             cccccceeEEEEeeccccccccccccccCCC-CcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccc
Q 009416          367 MFQKFSKVLNLQCREGENVIVPQELRQIQSP-PLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAE  445 (535)
Q Consensus       367 ~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le  445 (535)
                      .+++|+ .|.++.+.+.... +..+.. .+. ..++|++|+++.+.           ..+  .++..++. .+..+|+|+
T Consensus       339 ~~~~L~-~L~Ls~n~i~~~~-~~~l~~-~l~~~~~~L~~L~L~~n~-----------i~~--~~~~~l~~-~l~~~~~L~  401 (461)
T 1z7x_W          339 QNRFLL-ELQISNNRLEDAG-VRELCQ-GLGQPGSVLRVLWLADCD-----------VSD--SSCSSLAA-TLLANHSLR  401 (461)
T ss_dssp             HCSSCC-EEECCSSBCHHHH-HHHHHH-HHTSTTCCCCEEECTTSC-----------CCH--HHHHHHHH-HHHHCCCCC
T ss_pred             hCCCcc-EEEccCCcccccc-HHHHHH-HHcCCCCceEEEECCCCC-----------CCh--hhHHHHHH-HHHhCCCcc
Confidence            889999 8988866665221 111111 121 25699999996332           111  12333444 556679999


Q ss_pred             eEEEeecC
Q 009416          446 MVSIEHGH  453 (535)
Q Consensus       446 ~L~l~~~~  453 (535)
                      .|.+..+.
T Consensus       402 ~L~l~~N~  409 (461)
T 1z7x_W          402 ELDLSNNC  409 (461)
T ss_dssp             EEECCSSS
T ss_pred             EEECCCCC
Confidence            99998553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.60  E-value=6.2e-15  Score=155.21  Aligned_cols=297  Identities=10%  Similarity=0.038  Sum_probs=180.3

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccC---CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcc-
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ---PSENVKLFSLRKLALREVCADDQAIASLISGCPLI-  188 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~L-  188 (535)
                      .+++++|+++.+...  .+|..  .+++|++|+|++|.+..   |..++.+++|++|++++|.+....    +..+++| 
T Consensus        68 l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~  139 (520)
T 2z7x_B           68 NQELEYLDLSHNKLV--KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLN  139 (520)
T ss_dssp             CTTCCEEECCSSCCC--EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTSC
T ss_pred             ccCCCEEecCCCcee--ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh----ccccccce
Confidence            368999999887544  67766  78999999999998743   356788999999999999886532    4566777 


Q ss_pred             -cEEEEeecCC--Cce----------------------------eeeCCCCCccEEEEeecC------------------
Q 009416          189 -EYLEIRSCEG--LES----------------------------LDLVNLSNLKEIILVNTS------------------  219 (535)
Q Consensus       189 -e~L~L~~c~~--l~~----------------------------~~~~~l~~L~~L~l~~c~------------------  219 (535)
                       ++|++++|..  .+.                            ..+..+++|+.|++++|.                  
T Consensus       140 L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l  219 (520)
T 2z7x_B          140 ISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN  219 (520)
T ss_dssp             EEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGC
T ss_pred             eeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccc
Confidence             9999988865  110                            012234556666665542                  


Q ss_pred             -CccEEee-----------------cCCcccEEEEeeec-ccCeEEec-----CcccccceeEeeccCCCh--HHHHHhc
Q 009416          220 -DIKRVEI-----------------KTSNVNALAIHQTY-LFPIEVNV-----SSCGNLKCLKFDFLPIED--EWLCNGI  273 (535)
Q Consensus       220 -~l~~~~~-----------------~~~~L~~L~l~~~~-~~~~~~~~-----~~l~~L~~L~L~~~~~~~--~~l~~l~  273 (535)
                       .++.+.+                 ..++|++|+++++. .+.++..+     ..+++|+.++++.+.+..  ..+..++
T Consensus       220 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~  299 (520)
T 2z7x_B          220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF  299 (520)
T ss_dssp             TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHH
T ss_pred             cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhccc
Confidence             1111111                 13478888888887 43455555     778888888888777621  2222211


Q ss_pred             CCCCCccEEEeecCCCCccc-ccCCCCCceEEeccCccccccc---ccCCceeeEEEcCcch-------hhcccCcccce
Q 009416          274 SKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-------SFSSNALSLSE  342 (535)
Q Consensus       274 ~~~~~L~~L~L~~c~~l~~l-~~~~~~L~~L~l~~c~~L~~l~---~~~p~L~~L~~~g~~~-------~~~~~l~~L~~  342 (535)
                       .-++|+.|+++++...... +...++|++|+++++.--..+.   ...++|+.|.++++..       ..+.++++|+.
T Consensus       300 -~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~  378 (520)
T 2z7x_B          300 -SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ  378 (520)
T ss_dssp             -HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred             -ccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence             1246778888776532221 1355677888877764322111   2456777887777654       23567778888


Q ss_pred             eEEEEecccchhhHhHHH-HHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchh
Q 009416          343 TSLCFSSHLMVNIEWVVE-YFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANV  421 (535)
Q Consensus       343 L~l~~~~~~~~~~~~l~~-~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  421 (535)
                      |+++.+....    .++. .+.   .+++|+ .|.++.+.+. +.+|.     .++  ++|++|+++.+           
T Consensus       379 L~Ls~N~l~~----~l~~~~~~---~l~~L~-~L~Ls~N~l~-~~~~~-----~l~--~~L~~L~Ls~N-----------  431 (520)
T 2z7x_B          379 LDISQNSVSY----DEKKGDCS---WTKSLL-SLNMSSNILT-DTIFR-----CLP--PRIKVLDLHSN-----------  431 (520)
T ss_dssp             EECCSSCCBC----CGGGCSCC---CCTTCC-EEECCSSCCC-GGGGG-----SCC--TTCCEEECCSS-----------
T ss_pred             EECCCCcCCc----ccccchhc---cCccCC-EEECcCCCCC-cchhh-----hhc--ccCCEEECCCC-----------
Confidence            8776553222    1121 234   567777 7777765555 34444     333  47777777522           


Q ss_pred             cccccccchhHHhhhhhccCcccceEEEeecC
Q 009416          422 RARSSRFSIANVLDGLLWTSPHAEMVSIEHGH  453 (535)
Q Consensus       422 ~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~  453 (535)
                             .+..++..++ .+++|+.|.+..+.
T Consensus       432 -------~l~~ip~~~~-~l~~L~~L~L~~N~  455 (520)
T 2z7x_B          432 -------KIKSIPKQVV-KLEALQELNVASNQ  455 (520)
T ss_dssp             -------CCCCCCGGGG-GCTTCCEEECCSSC
T ss_pred             -------cccccchhhh-cCCCCCEEECCCCc
Confidence                   1223333344 45777777777554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.59  E-value=4.7e-16  Score=166.48  Aligned_cols=249  Identities=13%  Similarity=0.101  Sum_probs=173.0

Q ss_pred             CCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccE
Q 009416          137 YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKE  212 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~  212 (535)
                      .+++++.|+++++.+...  ..+..+++|++|+|++|.++... +..++.+++|++|+|++|...+..  .+.++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            458899999999987433  23578999999999999874322 223678999999999999743322  3567899999


Q ss_pred             EEEeecCCccEEe----ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416          213 IILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       213 L~l~~c~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      |++++| .+..++    ..+++|++|+++++. ....+..+.++++|+.|++++|.+++..    +..+++|+.|+++++
T Consensus       128 L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          128 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYN  202 (597)
T ss_dssp             EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSS
T ss_pred             EEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccC
Confidence            999998 222332    267899999999988 4333446889999999999999887643    455788999999875


Q ss_pred             CCCcccccCCCCCceEEeccCccccccc-ccCCceeeEEEcCcch---hhcccCcccceeEEEEecccchhhHhHHHHHh
Q 009416          288 HKLTSVRISSPCLKTLILECCDKLIQVE-IETPNLSIFKYHGDLI---SFSSNALSLSETSLCFSSHLMVNIEWVVEYFE  363 (535)
Q Consensus       288 ~~l~~l~~~~~~L~~L~l~~c~~L~~l~-~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~  363 (535)
                      . +..++ ...+|+.|+++++.- ..+. ...++|+.|.++++..   ..+.++++|+.|+++.+....    ..+..+.
T Consensus       203 ~-l~~l~-~~~~L~~L~ls~n~l-~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~----~~~~~~~  275 (597)
T 3oja_B          203 L-LSTLA-IPIAVEELDASHNSI-NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK----IMYHPFV  275 (597)
T ss_dssp             C-CSEEE-CCTTCSEEECCSSCC-CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE----EESGGGT
T ss_pred             c-ccccc-CCchhheeeccCCcc-cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC----CCHHHhc
Confidence            3 23332 235788888876642 2222 2235778888777765   556777888888886554333    2244445


Q ss_pred             hhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEE
Q 009416          364 ILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSV  409 (535)
Q Consensus       364 ~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~  409 (535)
                         .+++|+ .|.++.+.+.  .+|.     ....+++|++|+|+.
T Consensus       276 ---~l~~L~-~L~Ls~N~l~--~l~~-----~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          276 ---KMQRLE-RLYISNNRLV--ALNL-----YGQPIPTLKVLDLSH  310 (597)
T ss_dssp             ---TCSSCC-EEECTTSCCC--EEEC-----SSSCCTTCCEEECCS
T ss_pred             ---CccCCC-EEECCCCCCC--CCCc-----ccccCCCCcEEECCC
Confidence               677888 7777766555  3454     445667788888763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.58  E-value=1.6e-15  Score=161.24  Aligned_cols=143  Identities=18%  Similarity=0.167  Sum_probs=94.1

Q ss_pred             CCCCCccEEEeecCCCCccccc---CCCCCceEEeccCcccccc------cccCCceeeEEEcCcch------hhcccCc
Q 009416          274 SKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQV------EIETPNLSIFKYHGDLI------SFSSNAL  338 (535)
Q Consensus       274 ~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l------~~~~p~L~~L~~~g~~~------~~~~~l~  338 (535)
                      ..+++|+.|+++++...+.++.   ..++|+.|+++++. +..+      ....++|+.|.++++..      ..+.+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            5678899999988755443333   34688888888763 3222      13457888888887765      2356778


Q ss_pred             ccceeEEEEecccchhhHhHHHHHhhhhcc-cccceeEEEEeeccccccccccccccCCCCcccceeeEEEEeecCCccc
Q 009416          339 SLSETSLCFSSHLMVNIEWVVEYFEILAMF-QKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFS  417 (535)
Q Consensus       339 ~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l-~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  417 (535)
                      +|+.|+++.+....    .   ...   .+ ++|+ .|.++.+.++  .+|+     .+..+++|++|+++.+       
T Consensus       429 ~L~~L~l~~n~l~~----~---~~~---~l~~~L~-~L~L~~N~l~--~ip~-----~~~~l~~L~~L~L~~N-------  483 (562)
T 3a79_B          429 SILVLNLSSNMLTG----S---VFR---CLPPKVK-VLDLHNNRIM--SIPK-----DVTHLQALQELNVASN-------  483 (562)
T ss_dssp             TCCEEECCSSCCCG----G---GGS---SCCTTCS-EEECCSSCCC--CCCT-----TTTSSCCCSEEECCSS-------
T ss_pred             cCCEEECCCCCCCc----c---hhh---hhcCcCC-EEECCCCcCc--ccCh-----hhcCCCCCCEEECCCC-------
Confidence            89998886553322    1   112   34 5888 8888866666  6776     5557888999988632       


Q ss_pred             cchhcccccccchhHHhhhhhccCcccceEEEeecC
Q 009416          418 VANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGH  453 (535)
Q Consensus       418 ~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~  453 (535)
                                 .+..++...+..+++|+.|.+..++
T Consensus       484 -----------~l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          484 -----------QLKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             -----------CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             -----------CCCCCCHHHHhcCCCCCEEEecCCC
Confidence                       2233444446777899999888543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.57  E-value=2.1e-15  Score=155.67  Aligned_cols=267  Identities=15%  Similarity=0.129  Sum_probs=160.8

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      .++++.|++..+....  +|  +..+++|++|++++|.+... .++.+++|++|++++|.++.-  +  ++.+++|++|+
T Consensus        63 l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~  133 (457)
T 3bz5_A           63 LTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLN  133 (457)
T ss_dssp             CTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEE
Confidence            4578888877765433  33  66678888888888877543 367778888888888777432  2  56777888888


Q ss_pred             EeecCCCceeeeCCCCCccEEEEeecCCccEEee-cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHH
Q 009416          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (535)
Q Consensus       193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~  271 (535)
                      +++|.. ..+.+..+++|+.|++++|..+..+.+ .+++|+.|+++++.-..++  +..+++|+.|+++++.+++.   .
T Consensus       134 l~~N~l-~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~  207 (457)
T 3bz5_A          134 CARNTL-TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---D  207 (457)
T ss_dssp             CTTSCC-SCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---C
T ss_pred             CCCCcc-ceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---c
Confidence            877753 334566677788888777755554444 5677777777777622222  66777777777777776654   1


Q ss_pred             hcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcc----------cccccccCCceeeEEEcCcch---hhcccC
Q 009416          272 GISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDK----------LIQVEIETPNLSIFKYHGDLI---SFSSNA  337 (535)
Q Consensus       272 l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~----------L~~l~~~~p~L~~L~~~g~~~---~~~~~l  337 (535)
                       +..+++|+.|+++++.- +.++. ..++|+.|+++++.-          ++.+.....+|+.++++++..   ...+++
T Consensus       208 -l~~l~~L~~L~Ls~N~l-~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l  285 (457)
T 3bz5_A          208 -LNQNIQLTFLDCSSNKL-TEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC  285 (457)
T ss_dssp             -CTTCTTCSEEECCSSCC-SCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred             -cccCCCCCEEECcCCcc-cccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccccc
Confidence             55677777777777542 23443 345677777665421          111112222334444444332   334566


Q ss_pred             cccceeEEEEecccc-hh--hHhHHH-HHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEE
Q 009416          338 LSLSETSLCFSSHLM-VN--IEWVVE-YFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSV  409 (535)
Q Consensus       338 ~~L~~L~l~~~~~~~-~~--~~~l~~-~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~  409 (535)
                      ++|+.|+++.+...+ ..  ...+.. -+.   +.++|+ .|.++.+.++ + +       .+..+++|+.|+++.
T Consensus       286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~---~~~~L~-~L~L~~N~l~-~-l-------~l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          286 RKIKELDVTHNTQLYLLDCQAAGITELDLS---QNPKLV-YLYLNNTELT-E-L-------DVSHNTKLKSLSCVN  348 (457)
T ss_dssp             TTCCCCCCTTCTTCCEEECTTCCCSCCCCT---TCTTCC-EEECTTCCCS-C-C-------CCTTCTTCSEEECCS
T ss_pred             ccCCEEECCCCcccceeccCCCcceEechh---hcccCC-EEECCCCccc-c-c-------ccccCCcCcEEECCC
Confidence            788888875553221 00  000000 023   567888 7777766666 2 2       245678899998863

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.57  E-value=2e-15  Score=164.31  Aligned_cols=307  Identities=14%  Similarity=0.098  Sum_probs=145.5

Q ss_pred             CceEEEEeccCCCCccCCc-cccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          115 EVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      +++.|++..+...  .+|. .+..+++|++|+|++|.+...  ..+.++++|++|++++|.++.- ....++.+++|++|
T Consensus        26 ~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           26 NITVLNLTHNQLR--RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTEL  102 (680)
T ss_dssp             TCSEEECCSSCCC--CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEE
T ss_pred             CCcEEECCCCCCC--CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEE
Confidence            4555555544322  2332 344455555555555554221  2234555555555555544211 01123455555555


Q ss_pred             EEeecCCCce--eeeCCCCCccEEEEeecCC--ccEE-eecCCcccEEEEeeec-ccCeEEec--CcccccceeEeeccC
Q 009416          192 EIRSCEGLES--LDLVNLSNLKEIILVNTSD--IKRV-EIKTSNVNALAIHQTY-LFPIEVNV--SSCGNLKCLKFDFLP  263 (535)
Q Consensus       192 ~L~~c~~l~~--~~~~~l~~L~~L~l~~c~~--l~~~-~~~~~~L~~L~l~~~~-~~~~~~~~--~~l~~L~~L~L~~~~  263 (535)
                      ++++|...+-  -.+..+++|++|++++|.-  ...- ...+++|+.|+++++. ....+..+  ..+++|+.|+++++.
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            5555533211  1234455555555555511  1000 0134555555555544 11111111  123455555555554


Q ss_pred             CChHHHHHhcCCCCCccEEEeecCCCCcccc------cCCCCCceEEeccCccccc----cc-ccCCceeeEEEcCcch-
Q 009416          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR------ISSPCLKTLILECCDKLIQ----VE-IETPNLSIFKYHGDLI-  331 (535)
Q Consensus       264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~------~~~~~L~~L~l~~c~~L~~----l~-~~~p~L~~L~~~g~~~-  331 (535)
                      +.+..... +..+++|+.|.+.++.......      ....+|+.|+++++.--..    +. ...++|+.|+++++.. 
T Consensus       183 l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          183 IKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             CCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred             ccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence            44322211 3344555555554432211000      0225677777766532111    10 1114588888877654 


Q ss_pred             ----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccc----cccccccccccCCCCcccce
Q 009416          332 ----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGE----NVIVPQELRQIQSPPLTSVK  403 (535)
Q Consensus       332 ----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~----~~~~p~~~~~~~~~~l~~L~  403 (535)
                          ..+.++++|+.|++..+....    ..+..+.   ++++|+ .|.++.+...    ...+|. +....+..+++|+
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~---~l~~L~-~L~L~~~~~~~~~~~~~lp~-i~~~~~~~l~~L~  332 (680)
T 1ziw_A          262 VVGNDSFAWLPQLEYFFLEYNNIQH----LFSHSLH---GLFNVR-YLNLKRSFTKQSISLASLPK-IDDFSFQWLKCLE  332 (680)
T ss_dssp             EECTTTTTTCTTCCEEECCSCCBSE----ECTTTTT---TCTTCC-EEECTTCBCCC------CCE-ECTTTTTTCTTCC
T ss_pred             ccCcccccCcccccEeeCCCCccCc----cChhhhc---CCCCcc-EEeccchhhhcccccccccc-cChhhcccCCCCC
Confidence                346777888888886553332    2234445   678888 7776522111    012221 1112455677888


Q ss_pred             eeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeec
Q 009416          404 KLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHG  452 (535)
Q Consensus       404 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~  452 (535)
                      +|+++.+.                  +..+....+..+++|+.|.+..+
T Consensus       333 ~L~l~~n~------------------l~~~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          333 HLNMEDND------------------IPGIKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             EEECCSCC------------------BCCCCTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCc------------------cCCCChhHhccccCCcEEECCCC
Confidence            88886321                  22233446777899999998744

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.57  E-value=1.1e-15  Score=149.81  Aligned_cols=239  Identities=15%  Similarity=0.068  Sum_probs=133.8

Q ss_pred             cCceEEEEeccCCCC-ccCCccccCCCceeEEEEeC-cccc--CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416          114 SEVKELVLVHWRSER-RNLPEIIFYVESLHVLELSY-CKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~-~~lp~~l~~~~~L~~L~L~~-~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le  189 (535)
                      .+++.|++..+.... ..+|..+..+++|++|+|++ +.+.  .|..++++++|++|++++|.++.. ++..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCC
Confidence            367778877765432 15777888888888888884 6553  345677888888888888876422 223366788888


Q ss_pred             EEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---ecCC-cccEEEEeeec-ccCeEEecCcccccceeEeecc
Q 009416          190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTS-NVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFL  262 (535)
Q Consensus       190 ~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~~~~-~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~  262 (535)
                      +|++++|...+.+  .+..+++|++|++++|.--..++   ..++ +|+.|+++++. .+..+..+..++ |+.|+++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            8888887543222  34556677777776652211111   1222 45555555444 222223333333 445555444


Q ss_pred             CCChHHHHHhcCCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccce
Q 009416          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSE  342 (535)
Q Consensus       263 ~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~  342 (535)
                      .+.+... ..+..+++|+.|+++++.....                                     . ..+..+++|++
T Consensus       208 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-------------------------------------~-~~~~~l~~L~~  248 (313)
T 1ogq_A          208 MLEGDAS-VLFGSDKNTQKIHLAKNSLAFD-------------------------------------L-GKVGLSKNLNG  248 (313)
T ss_dssp             EEEECCG-GGCCTTSCCSEEECCSSEECCB-------------------------------------G-GGCCCCTTCCE
T ss_pred             cccCcCC-HHHhcCCCCCEEECCCCceeee-------------------------------------c-CcccccCCCCE
Confidence            4433211 1133444444444444221000                                     0 12334566777


Q ss_pred             eEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416          343 TSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS  408 (535)
Q Consensus       343 L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~  408 (535)
                      |+++.+...+    .++..+.   .+++|+ .|.++.+.+. +.+|+     . ..+++|+.|++.
T Consensus       249 L~Ls~N~l~~----~~p~~l~---~l~~L~-~L~Ls~N~l~-~~ip~-----~-~~l~~L~~l~l~  299 (313)
T 1ogq_A          249 LDLRNNRIYG----TLPQGLT---QLKFLH-SLNVSFNNLC-GEIPQ-----G-GNLQRFDVSAYA  299 (313)
T ss_dssp             EECCSSCCEE----CCCGGGG---GCTTCC-EEECCSSEEE-EECCC-----S-TTGGGSCGGGTC
T ss_pred             EECcCCcccC----cCChHHh---cCcCCC-EEECcCCccc-ccCCC-----C-ccccccChHHhc
Confidence            7665543332    3344456   788888 8888766666 56665     3 567788887775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.54  E-value=1e-14  Score=155.06  Aligned_cols=278  Identities=13%  Similarity=0.072  Sum_probs=163.7

Q ss_pred             cCceEEEEeccCCCCccCC-ccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      ++++.|+++.+...  .+| ..+..+++|++|+|++|.+..  +..+..+++|++|++++|.++.  ++..  .+++|++
T Consensus        52 ~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~  125 (562)
T 3a79_B           52 PRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCC--PMASLRH  125 (562)
T ss_dssp             TTCCEEECCSSCCC--CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE--ECSC--CCTTCSE
T ss_pred             CCcCEEECCCCCcc--ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc--cCcc--ccccCCE
Confidence            68888888876543  444 467778999999999987743  2557788999999999887742  2221  6889999


Q ss_pred             EEEeecCCCc-e--eeeCCCCCccEEEEeecCCccEEee-cCCcc--cEEEEeeecc---cCe-----------------
Q 009416          191 LEIRSCEGLE-S--LDLVNLSNLKEIILVNTSDIKRVEI-KTSNV--NALAIHQTYL---FPI-----------------  244 (535)
Q Consensus       191 L~L~~c~~l~-~--~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L--~~L~l~~~~~---~~~-----------------  244 (535)
                      |++++|...+ .  -.+.++++|++|+++++.- ....+ .+++|  +.|+++++..   ...                 
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~  204 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH  204 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCcc-ccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence            9999887543 2  2466788999999988721 11111 34555  8888887642   000                 


Q ss_pred             ---------EEecCcccccceeEeeccC----------------------------CChHHHHHhc--CCCCCccEEEee
Q 009416          245 ---------EVNVSSCGNLKCLKFDFLP----------------------------IEDEWLCNGI--SKLPLLEYLSMT  285 (535)
Q Consensus       245 ---------~~~~~~l~~L~~L~L~~~~----------------------------~~~~~l~~l~--~~~~~L~~L~L~  285 (535)
                               ...+..+++|+.++++++.                            +.+..+..+.  ...++|++|++.
T Consensus       205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~  284 (562)
T 3a79_B          205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY  284 (562)
T ss_dssp             SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred             CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence                     1122345566666666553                            2221111110  112367777777


Q ss_pred             cCCCCcccccCC-----CC-----------------------------CceEEeccCccccccc--ccCCceeeEEEcCc
Q 009416          286 KCHKLTSVRISS-----PC-----------------------------LKTLILECCDKLIQVE--IETPNLSIFKYHGD  329 (535)
Q Consensus       286 ~c~~l~~l~~~~-----~~-----------------------------L~~L~l~~c~~L~~l~--~~~p~L~~L~~~g~  329 (535)
                      ++...+.++...     .+                             |+.|++.++.-. .+.  ...++|+.|.++++
T Consensus       285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~l~~L~~L~l~~n  363 (562)
T 3a79_B          285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-HMVCPPSPSSFTFLNFTQN  363 (562)
T ss_dssp             EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-CCCCCSSCCCCCEEECCSS
T ss_pred             ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-cccCccCCCCceEEECCCC
Confidence            654333333322     23                             444444443221 111  34567888888776


Q ss_pred             ch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCccccee
Q 009416          330 LI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKK  404 (535)
Q Consensus       330 ~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~  404 (535)
                      ..     ..+.++++|+.|+++.+....  ...++..+.   ++++|+ .|.++.+.+. ..+|+.    .+..+++|++
T Consensus       364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~---~l~~L~-~L~l~~N~l~-~~~~~~----~~~~l~~L~~  432 (562)
T 3a79_B          364 VFTDSVFQGCSTLKRLQTLILQRNGLKN--FFKVALMTK---NMSSLE-TLDVSLNSLN-SHAYDR----TCAWAESILV  432 (562)
T ss_dssp             CCCTTTTTTCCSCSSCCEEECCSSCCCB--TTHHHHTTT---TCTTCC-EEECTTSCCB-SCCSSC----CCCCCTTCCE
T ss_pred             ccccchhhhhcccCCCCEEECCCCCcCC--cccchhhhc---CCCCCC-EEECCCCcCC-CccChh----hhcCcccCCE
Confidence            54     345778888888886553222  113344456   788888 7777766665 335542    2345567777


Q ss_pred             eEEEEe
Q 009416          405 LNYSVR  410 (535)
Q Consensus       405 L~l~~~  410 (535)
                      |+++.+
T Consensus       433 L~l~~n  438 (562)
T 3a79_B          433 LNLSSN  438 (562)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            776543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.54  E-value=4.6e-16  Score=161.23  Aligned_cols=314  Identities=16%  Similarity=0.090  Sum_probs=201.0

Q ss_pred             cCceEEEEeccCCCCccCCccccCCC----ceeEEEEeCccccC------CCCcccCcccceeEeeeEeeChhHHHHHH-
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVE----SLHVLELSYCKLQQ------PSENVKLFSLRKLALREVCADDQAIASLI-  182 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~----~L~~L~L~~~~~~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~~~-  182 (535)
                      +++++|+++.+......+......++    +|++|+|++|.+..      +..+..+++|++|++++|.+++.....+. 
T Consensus        56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  135 (461)
T 1z7x_W           56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE  135 (461)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence            68999999876533222222222233    79999999998753      24567889999999999988655444332 


Q ss_pred             ---hCCCcccEEEEeecCCCce----e--eeCCCCCccEEEEeecCCccEE-----ee----cCCcccEEEEeeec-ccC
Q 009416          183 ---SGCPLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNTSDIKRV-----EI----KTSNVNALAIHQTY-LFP  243 (535)
Q Consensus       183 ---~~~p~Le~L~L~~c~~l~~----~--~~~~l~~L~~L~l~~c~~l~~~-----~~----~~~~L~~L~l~~~~-~~~  243 (535)
                         ...++|++|++++|..-..    +  .+..+++|++|++++|. +...     .-    ..++|++|+++++. ...
T Consensus       136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  214 (461)
T 1z7x_W          136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD  214 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred             HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence               2356899999999964321    1  23446899999999883 2211     11    24699999999887 221


Q ss_pred             ----eEEecCcccccceeEeeccCCChHHHH----HhcCCCCCccEEEeecCCCCcc-----ccc---CCCCCceEEecc
Q 009416          244 ----IEVNVSSCGNLKCLKFDFLPIEDEWLC----NGISKLPLLEYLSMTKCHKLTS-----VRI---SSPCLKTLILEC  307 (535)
Q Consensus       244 ----~~~~~~~l~~L~~L~L~~~~~~~~~l~----~l~~~~~~L~~L~L~~c~~l~~-----l~~---~~~~L~~L~l~~  307 (535)
                          +...+..+++|++|+++++.+.+....    .+...+++|++|++++|. ++.     ++.   ..++|++|++++
T Consensus       215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~  293 (461)
T 1z7x_W          215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAG  293 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCC
Confidence                234466789999999999988776543    334568999999999984 333     222   367899999988


Q ss_pred             Cccc----ccc----cccCCceeeEEEcCcch---------hhcccCcccceeEEEEecccchhhHhHHHHHhhhhc-cc
Q 009416          308 CDKL----IQV----EIETPNLSIFKYHGDLI---------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAM-FQ  369 (535)
Q Consensus       308 c~~L----~~l----~~~~p~L~~L~~~g~~~---------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~-l~  369 (535)
                      +.--    ..+    ....++|+.|.++++..         ..+.++++|+.|+++.+.........+.+.+.   . .+
T Consensus       294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~---~~~~  370 (461)
T 1z7x_W          294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG---QPGS  370 (461)
T ss_dssp             CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT---STTC
T ss_pred             CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc---CCCC
Confidence            7421    111    11236899999988764         23456799999999766322211122223332   2 56


Q ss_pred             ccceeEEEEeecccc---ccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccce
Q 009416          370 KFSKVLNLQCREGEN---VIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEM  446 (535)
Q Consensus       370 ~L~~~L~L~~~~l~~---~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~  446 (535)
                      +|+ .|.++.+.+..   ..++.     .+..+++|++|+++.++           ..+  .++..+...+-+..+.|+.
T Consensus       371 ~L~-~L~L~~n~i~~~~~~~l~~-----~l~~~~~L~~L~l~~N~-----------i~~--~~~~~l~~~l~~~~~~L~~  431 (461)
T 1z7x_W          371 VLR-VLWLADCDVSDSSCSSLAA-----TLLANHSLRELDLSNNC-----------LGD--AGILQLVESVRQPGCLLEQ  431 (461)
T ss_dssp             CCC-EEECTTSCCCHHHHHHHHH-----HHHHCCCCCEEECCSSS-----------CCH--HHHHHHHHHHTSTTCCCCE
T ss_pred             ceE-EEECCCCCCChhhHHHHHH-----HHHhCCCccEEECCCCC-----------CCH--HHHHHHHHHhccCCcchhh
Confidence            899 88888655552   14555     45567899999997432           111  2444444434343457888


Q ss_pred             EEEee
Q 009416          447 VSIEH  451 (535)
Q Consensus       447 L~l~~  451 (535)
                      |.+..
T Consensus       432 L~~~~  436 (461)
T 1z7x_W          432 LVLYD  436 (461)
T ss_dssp             EECTT
T ss_pred             eeecc
Confidence            88763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=144.90  Aligned_cols=250  Identities=14%  Similarity=0.063  Sum_probs=132.2

Q ss_pred             cCceEEEEeccCCCCccCCc-cccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      +++++|++..+...  .+|. .+..+++|++|++++|.+...  ..+..+++|++|++++|.++.- ....+..+++|++
T Consensus        52 ~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred             ccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence            36666666654432  3443 455667777777777665322  3456667777777777666321 1223556677777


Q ss_pred             EEEeecCCCc--e-eeeCCCCCccEEEEeecCCccEEee----cCCcccEEEEeeec-ccCeEEecCcccccceeEeecc
Q 009416          191 LEIRSCEGLE--S-LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFL  262 (535)
Q Consensus       191 L~L~~c~~l~--~-~~~~~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~  262 (535)
                      |++++|....  . -.+..+++|++|++++|..+..+..    .+++|+.|+++++. ....+..+..+++|++|+++++
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            7777664321  1 1244556666666666644444321    34555556555554 2212234455555555555555


Q ss_pred             CCChHHHHHhcCCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccce
Q 009416          263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSE  342 (535)
Q Consensus       263 ~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~  342 (535)
                      .+... ...++..+++|+.|+++++.-. .++.                ..+                 ......+.++.
T Consensus       209 ~l~~~-~~~~~~~~~~L~~L~L~~n~l~-~~~~----------------~~l-----------------~~~~~~~~l~~  253 (353)
T 2z80_A          209 QHILL-LEIFVDVTSSVECLELRDTDLD-TFHF----------------SEL-----------------STGETNSLIKK  253 (353)
T ss_dssp             CSTTH-HHHHHHHTTTEEEEEEESCBCT-TCCC----------------C-----------------------CCCCCCE
T ss_pred             ccccc-hhhhhhhcccccEEECCCCccc-cccc----------------ccc-----------------ccccccchhhc
Confidence            54321 2222333455555555553211 0000                000                 01122344566


Q ss_pred             eEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416          343 TSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT  411 (535)
Q Consensus       343 L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~  411 (535)
                      +++............+++.+.   .+++|+ .|.++.+.++  .+|+.    .+..+++|++|+++..+
T Consensus       254 l~L~~~~l~~~~l~~l~~~l~---~l~~L~-~L~Ls~N~l~--~i~~~----~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          254 FTFRNVKITDESLFQVMKLLN---QISGLL-ELEFSRNQLK--SVPDG----IFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             EEEESCBCCHHHHHHHHHHHH---TCTTCC-EEECCSSCCC--CCCTT----TTTTCTTCCEEECCSSC
T ss_pred             cccccccccCcchhhhHHHHh---cccCCC-EEECCCCCCC--ccCHH----HHhcCCCCCEEEeeCCC
Confidence            666433222211234566777   899999 8888877776  67762    23678899999997543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.53  E-value=1.3e-14  Score=143.36  Aligned_cols=280  Identities=13%  Similarity=0.077  Sum_probs=142.8

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      +++.+++....  ...+|..+.  ++|++|+|++|.+...  ..+..+++|++|++++|.++... +..+..+++|++|+
T Consensus        32 ~l~~l~~~~~~--l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLG--LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSC--CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCC--ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEE
Confidence            45555443322  234554332  5677777777766332  24566777777777766653211 12245666777777


Q ss_pred             EeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChH-HHH
Q 009416          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDE-WLC  270 (535)
Q Consensus       193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~-~l~  270 (535)
                      +++|.. ..+.....++|++|+                     ++++. .......+.++++|+.|+++++.+... ...
T Consensus       107 Ls~n~l-~~l~~~~~~~L~~L~---------------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  164 (330)
T 1xku_A          107 LSKNQL-KELPEKMPKTLQELR---------------------VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN  164 (330)
T ss_dssp             CCSSCC-SBCCSSCCTTCCEEE---------------------CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             CCCCcC-CccChhhcccccEEE---------------------CCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence            766642 222111124444444                     44443 111122355666666666666665431 112


Q ss_pred             HhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccccc----cccCCceeeEEEcCcch-----hhcccCccc
Q 009416          271 NGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNALSL  340 (535)
Q Consensus       271 ~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l----~~~~p~L~~L~~~g~~~-----~~~~~l~~L  340 (535)
                      ..+.++++|+.|+++++. ++.++. ..++|+.|+++++. +..+    ....++|+.|.++++..     ..+.++++|
T Consensus       165 ~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  242 (330)
T 1xku_A          165 GAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  242 (330)
T ss_dssp             TGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             hhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence            224556677777776643 223332 22566666666553 2111    12345666666666544     246677778


Q ss_pred             ceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccC--CCCcccceeeEEEEeecCCcccc
Q 009416          341 SETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQ--SPPLTSVKKLNYSVRTDSWDFSV  418 (535)
Q Consensus       341 ~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~  418 (535)
                      +.|+++.+...     .++..+.   .+++|+ .|.++.+.++  .++...+...  ....++|+.|++...+       
T Consensus       243 ~~L~L~~N~l~-----~lp~~l~---~l~~L~-~L~l~~N~i~--~~~~~~f~~~~~~~~~~~l~~l~l~~N~-------  304 (330)
T 1xku_A          243 RELHLNNNKLV-----KVPGGLA---DHKYIQ-VVYLHNNNIS--AIGSNDFCPPGYNTKKASYSGVSLFSNP-------  304 (330)
T ss_dssp             CEEECCSSCCS-----SCCTTTT---TCSSCC-EEECCSSCCC--CCCTTSSSCSSCCTTSCCCSEEECCSSS-------
T ss_pred             CEEECCCCcCc-----cCChhhc---cCCCcC-EEECCCCcCC--ccChhhcCCcccccccccccceEeecCc-------
Confidence            88877655222     2233345   677888 7777755555  4443333211  1224567777765322       


Q ss_pred             chhcccccccchhHHhhhhhccCcccceEEEe
Q 009416          419 ANVRARSSRFSIANVLDGLLWTSPHAEMVSIE  450 (535)
Q Consensus       419 ~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~  450 (535)
                             +  ....+....|..+++++.+.+.
T Consensus       305 -------~--~~~~i~~~~f~~~~~l~~l~L~  327 (330)
T 1xku_A          305 -------V--QYWEIQPSTFRCVYVRAAVQLG  327 (330)
T ss_dssp             -------S--CGGGSCGGGGTTCCCGGGEEC-
T ss_pred             -------c--cccccCccccccccceeEEEec
Confidence                   0  1011223356666777777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.53  E-value=4.5e-14  Score=150.41  Aligned_cols=254  Identities=15%  Similarity=0.043  Sum_probs=180.3

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .+++.|++..+...  .+|..++  ++|++|+|++|.+...+.  .+++|++|+|++|.++.  ++   ..+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--CC---CCCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEEC
Confidence            46888888766543  7777665  799999999998864333  67899999999998742  22   26789999999


Q ss_pred             eecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhc
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI  273 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~  273 (535)
                      ++|... .+.. .+++|+.|++++| .+..++...++|++|++++|....++   ...++|+.|++++|.++.-     .
T Consensus       109 s~N~l~-~l~~-~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~~l-----~  177 (622)
T 3g06_A          109 FSNPLT-HLPA-LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTSL-----P  177 (622)
T ss_dssp             CSCCCC-CCCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCC-----C
T ss_pred             cCCcCC-CCCC-CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCCCC-----c
Confidence            888542 2322 4578999999887 34444445689999999988722222   2357889999998887752     2


Q ss_pred             CCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-hhcccCcccceeEEEEecccc
Q 009416          274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-SFSSNALSLSETSLCFSSHLM  352 (535)
Q Consensus       274 ~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-~~~~~l~~L~~L~l~~~~~~~  352 (535)
                      ..+++|+.|+++++. ++.++...++|+.|.+.++. +..+....++|+.|.++++.. ..-..+++|+.|+++.+....
T Consensus       178 ~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~  255 (622)
T 3g06_A          178 MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS  255 (622)
T ss_dssp             CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred             ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCc
Confidence            557899999999864 45566666789999888763 445555567899999988876 211566889999887653222


Q ss_pred             hhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEe
Q 009416          353 VNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVR  410 (535)
Q Consensus       353 ~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~  410 (535)
                           ++   .   .+++|+ .|.++.|.++  .+|+     .+..+++|+.|+|+.+
T Consensus       256 -----lp---~---~~~~L~-~L~Ls~N~L~--~lp~-----~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          256 -----LP---M---LPSGLL-SLSVYRNQLT--RLPE-----SLIHLSSETTVNLEGN  294 (622)
T ss_dssp             -----CC---C---CCTTCC-EEECCSSCCC--SCCG-----GGGGSCTTCEEECCSC
T ss_pred             -----CC---c---ccccCc-EEeCCCCCCC--cCCH-----HHhhccccCEEEecCC
Confidence                 11   2   367899 8888877776  6676     5667889999999743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.51  E-value=1.6e-14  Score=153.77  Aligned_cols=246  Identities=14%  Similarity=0.109  Sum_probs=132.1

Q ss_pred             CCccccCCCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCC
Q 009416          131 LPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSN  209 (535)
Q Consensus       131 lp~~l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~  209 (535)
                      .|..+..+++|++|++++|.+. .+..+..+ +|++|+++++.+..  ++  ...+++|++|++.+|..........+++
T Consensus       274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTFTSNKGGNAFSEVDLPS  348 (570)
T ss_dssp             STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred             chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeCcCCccccccccccCCC
Confidence            3444455566666666666553 22334444 66666666665531  11  1345666666666665443333344566


Q ss_pred             ccEEEEeecCCccEE---e---ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEE
Q 009416          210 LKEIILVNTSDIKRV---E---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS  283 (535)
Q Consensus       210 L~~L~l~~c~~l~~~---~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~  283 (535)
                      |+.|++++|.- ...   .   ..+++|++|+++++.....+..+..+++|+.|+++++.+.+......+.++++|+.|+
T Consensus       349 L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  427 (570)
T 2z63_A          349 LEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  427 (570)
T ss_dssp             CCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred             CCEEeCcCCcc-CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence            66666665521 111   1   1456666666666552222333555666666666655544332222345556666666


Q ss_pred             eecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEecccchhhHhHHH
Q 009416          284 MTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVE  360 (535)
Q Consensus       284 L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  360 (535)
                      +++|...+..+.   ..++|+.|++.+|.-...               ..+..+.++++|+.|+++.+....    ..+.
T Consensus       428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~p~~~~~l~~L~~L~l~~n~l~~----~~~~  488 (570)
T 2z63_A          428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---------------FLPDIFTELRNLTFLDLSQCQLEQ----LSPT  488 (570)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG---------------EECSCCTTCTTCCEEECTTSCCCE----ECTT
T ss_pred             CcCCcccccchhhhhcCCcCcEEECcCCcCccc---------------cchhhhhcccCCCEEECCCCcccc----CChh
Confidence            665543222221   233445555444421100               001346678888888886553333    2244


Q ss_pred             HHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416          361 YFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT  411 (535)
Q Consensus       361 ~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~  411 (535)
                      .+.   .+++|+ .|.++.+.+. ...+.     .+..+++|++|++...+
T Consensus       489 ~~~---~l~~L~-~L~l~~n~l~-~~~~~-----~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          489 AFN---SLSSLQ-VLNMASNQLK-SVPDG-----IFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTT---TCTTCC-EEECCSSCCS-CCCTT-----TTTTCTTCCEEECCSSC
T ss_pred             hhh---cccCCC-EEeCCCCcCC-CCCHH-----HhhcccCCcEEEecCCc
Confidence            556   789999 8888877666 33333     56678899999998655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.51  E-value=7.1e-14  Score=144.11  Aligned_cols=235  Identities=17%  Similarity=0.107  Sum_probs=133.3

Q ss_pred             CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeec
Q 009416          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (535)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c  218 (535)
                      ++|++|++++|.+...+.++.+++|++|++++|.++.  ++   ...++|++|++++|...+--.+..+++|+.|++++|
T Consensus       131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence            4666666666665433456666667777776665532  11   123466777776664332114555677777777766


Q ss_pred             CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCcccccCCC
Q 009416          219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSP  298 (535)
Q Consensus       219 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~  298 (535)
                      . +..++...++|+.|+++++....++ .++.+++|+.|+++++.+.+     +....++|+.|+++++. ++.++...+
T Consensus       206 ~-l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~N~-l~~l~~~~~  277 (454)
T 1jl5_A          206 S-LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNVRDNY-LTDLPELPQ  277 (454)
T ss_dssp             C-CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-----CCSCCTTCCEEECCSSC-CSCCCCCCT
T ss_pred             c-CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-----ccccccccCEEECCCCc-ccccCcccC
Confidence            2 2222223357777777776622333 36677777777777776654     11234677777777654 333554556


Q ss_pred             CCceEEeccCcccccccccCCceeeEEEcCcchhhcccC-cccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEE
Q 009416          299 CLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNA-LSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNL  377 (535)
Q Consensus       299 ~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L  377 (535)
                      +|+.|+++++. +..+....++|+.|.++++....+... ++|+.|+++.+....        +..   .+++|+ .|.+
T Consensus       278 ~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~--------lp~---~~~~L~-~L~L  344 (454)
T 1jl5_A          278 SLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--------LPA---LPPRLE-RLIA  344 (454)
T ss_dssp             TCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC--------CCC---CCTTCC-EEEC
T ss_pred             cCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc--------ccc---cCCcCC-EEEC
Confidence            77777776653 333322235777777777665333344 367777775442211        112   356777 7777


Q ss_pred             EeeccccccccccccccCCCCcccceeeEEEE
Q 009416          378 QCREGENVIVPQELRQIQSPPLTSVKKLNYSV  409 (535)
Q Consensus       378 ~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~  409 (535)
                      +.+.++  .+|.        .+++|++|+++.
T Consensus       345 ~~N~l~--~lp~--------~l~~L~~L~L~~  366 (454)
T 1jl5_A          345 SFNHLA--EVPE--------LPQNLKQLHVEY  366 (454)
T ss_dssp             CSSCCS--CCCC--------CCTTCCEEECCS
T ss_pred             CCCccc--cccc--------hhhhccEEECCC
Confidence            655555  3443        245777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.49  E-value=1.6e-14  Score=142.99  Aligned_cols=280  Identities=14%  Similarity=0.084  Sum_probs=139.3

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      .++.+++..+.  ...+|..+.  ++|++|++++|.+...  ..+..+++|++|++++|.++... +..+..+++|++|+
T Consensus        34 ~l~~l~~~~~~--l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLG--LKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSC--CSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCC--ccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEE
Confidence            35555544332  224554432  5666666666655221  34556666666666666553211 12245566666666


Q ss_pred             EeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeE-EecCcccccceeEeeccCCChH-HHH
Q 009416          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDE-WLC  270 (535)
Q Consensus       193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~-~l~  270 (535)
                      +++|... .+.....++|++|++                     +++....++ ..+.++++|+.|+++++.+... ...
T Consensus       109 L~~n~l~-~l~~~~~~~L~~L~l---------------------~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  166 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLPSSLVELRI---------------------HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP  166 (332)
T ss_dssp             CCSSCCC-SCCSSCCTTCCEEEC---------------------CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred             CCCCcCC-ccCccccccCCEEEC---------------------CCCccCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence            6665422 221111144455544                     444411111 2245555666666665555421 111


Q ss_pred             HhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCcccccc----cccCCceeeEEEcCcch-----hhcccCccc
Q 009416          271 NGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNALSL  340 (535)
Q Consensus       271 ~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l----~~~~p~L~~L~~~g~~~-----~~~~~l~~L  340 (535)
                      ..+..+ +|+.|+++++. ++.++. ..++|+.|+++++.- ..+    ....++|+.|.++++..     ..+.++++|
T Consensus       167 ~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  243 (332)
T 2ft3_A          167 GAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL  243 (332)
T ss_dssp             TSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCC-CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred             ccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence            112333 55666665543 222332 224556665554421 111    12345666666666544     356778889


Q ss_pred             ceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCC--CCcccceeeEEEEeecCCcccc
Q 009416          341 SETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQS--PPLTSVKKLNYSVRTDSWDFSV  418 (535)
Q Consensus       341 ~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~  418 (535)
                      +.|+++.+...     .++..+.   .+++|+ .|.++.+.++  .++...+....  ..+.+|+.|++...+       
T Consensus       244 ~~L~L~~N~l~-----~lp~~l~---~l~~L~-~L~l~~N~l~--~~~~~~~~~~~~~~~~~~l~~L~l~~N~-------  305 (332)
T 2ft3_A          244 RELHLDNNKLS-----RVPAGLP---DLKLLQ-VVYLHTNNIT--KVGVNDFCPVGFGVKRAYYNGISLFNNP-------  305 (332)
T ss_dssp             CEEECCSSCCC-----BCCTTGG---GCTTCC-EEECCSSCCC--BCCTTSSSCSSCCSSSCCBSEEECCSSS-------
T ss_pred             CEEECCCCcCe-----ecChhhh---cCccCC-EEECCCCCCC--ccChhHccccccccccccccceEeecCc-------
Confidence            98888655322     2333456   788999 8888766665  44443332111  124678888886333       


Q ss_pred             chhcccccccchhHHhhhhhccCcccceEEEee
Q 009416          419 ANVRARSSRFSIANVLDGLLWTSPHAEMVSIEH  451 (535)
Q Consensus       419 ~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~  451 (535)
                             +  ....+....+..+++|+.+.+..
T Consensus       306 -------~--~~~~~~~~~~~~l~~L~~l~l~~  329 (332)
T 2ft3_A          306 -------V--PYWEVQPATFRCVTDRLAIQFGN  329 (332)
T ss_dssp             -------S--CGGGSCGGGGTTBCCSTTEEC--
T ss_pred             -------c--cccccCcccccccchhhhhhccc
Confidence                   0  11123334677788999888863

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.49  E-value=1e-14  Score=142.59  Aligned_cols=219  Identities=19%  Similarity=0.187  Sum_probs=145.8

Q ss_pred             CCccCCccccCCCceeEEEEeCccccCC-C-CcccCcccceeEeeeEeeChhH-HHHHHhCCCcccEEEEeecCCCcee-
Q 009416          127 ERRNLPEIIFYVESLHVLELSYCKLQQP-S-ENVKLFSLRKLALREVCADDQA-IASLISGCPLIEYLEIRSCEGLESL-  202 (535)
Q Consensus       127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~~-l~~~~~~~p~Le~L~L~~c~~l~~~-  202 (535)
                      ....+|..+.  ++|++|+|++|.+... . .+..+++|++|++++|.++... ....+..+++|++|++++|... .+ 
T Consensus        18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~   94 (306)
T 2z66_A           18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS   94 (306)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEE
T ss_pred             CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cCh
Confidence            3446665443  6889999999887433 2 3578899999999888774211 1112446889999999888643 22 


Q ss_pred             -eeCCCCCccEEEEeec--CCccE--EeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCC
Q 009416          203 -DLVNLSNLKEIILVNT--SDIKR--VEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKL  276 (535)
Q Consensus       203 -~~~~l~~L~~L~l~~c--~~l~~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~  276 (535)
                       .+..+++|++|++++|  ..+..  ....+++|+.|+++++. ....+..+..+++|+.|+++++.+.+......+..+
T Consensus        95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  174 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  174 (306)
T ss_dssp             EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence             3667788999988887  22221  12256888888888876 333334567788899999988877664444456778


Q ss_pred             CCccEEEeecCCCCccccc---CCCCCceEEeccCcccccc----cccCCceeeEEEcCcch-----hhcccCc-cccee
Q 009416          277 PLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNAL-SLSET  343 (535)
Q Consensus       277 ~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l----~~~~p~L~~L~~~g~~~-----~~~~~l~-~L~~L  343 (535)
                      ++|+.|+++++...+..+.   ..++|+.|+++++.- ..+    ....++|+.|+++++..     ..+..++ +|+.|
T Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L  253 (306)
T 2z66_A          175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  253 (306)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred             cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence            8899999988754332222   346888888877642 222    12457888888888765     3455664 79999


Q ss_pred             EEEEec
Q 009416          344 SLCFSS  349 (535)
Q Consensus       344 ~l~~~~  349 (535)
                      +++.+.
T Consensus       254 ~L~~N~  259 (306)
T 2z66_A          254 NLTQND  259 (306)
T ss_dssp             ECTTCC
T ss_pred             EccCCC
Confidence            886553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=4.3e-14  Score=147.15  Aligned_cols=223  Identities=12%  Similarity=0.079  Sum_probs=110.3

Q ss_pred             ceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEee
Q 009416          140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN  217 (535)
Q Consensus       140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~  217 (535)
                      +|++|+|++|.+...  ..+..+++|++|+|++|.++... +  +..+++|++|+|++|. +..+.  ..++|+.|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL--VGPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC--CCCCcCEEECcC
Confidence            444444444444221  23344444444444444432110 0  3344444444444442 11111  124455555544


Q ss_pred             cCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc-
Q 009416          218 TSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-  295 (535)
Q Consensus       218 c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-  295 (535)
                      |.--......+++|+.|+++++. ....+..++++++|+.|++++|.+++..+..+...+++|+.|+++++... .++. 
T Consensus       109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~~~~~  187 (487)
T 3oja_A          109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ  187 (487)
T ss_dssp             SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECC
T ss_pred             CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-ccccc
Confidence            42111111234556666666555 33234455666777777777776666544444445677777777765422 2222 


Q ss_pred             -CCCCCceEEeccCcccccc---cccCCceeeEEEcCcch----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhc
Q 009416          296 -SSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAM  367 (535)
Q Consensus       296 -~~~~L~~L~l~~c~~L~~l---~~~~p~L~~L~~~g~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~  367 (535)
                       ..++|+.|+++++. +..+   ....++|+.|+++++..    ..+..+++|+.++++.+....   ..++.++.   .
T Consensus       188 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c---~~~~~~~~---~  260 (487)
T 3oja_A          188 VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC---GTLRDFFS---K  260 (487)
T ss_dssp             CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCH---HHHHHHHT---T
T ss_pred             ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcC---cchHHHHH---h
Confidence             24566666666543 2122   12345666777666554    345667788888776554331   14556666   6


Q ss_pred             ccccceeEEE
Q 009416          368 FQKFSKVLNL  377 (535)
Q Consensus       368 l~~L~~~L~L  377 (535)
                      ++.++ .|.+
T Consensus       261 l~~L~-~l~~  269 (487)
T 3oja_A          261 NQRVQ-TVAK  269 (487)
T ss_dssp             CHHHH-HHHH
T ss_pred             CCCCc-EEec
Confidence            77777 4443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.44  E-value=4.5e-14  Score=138.72  Aligned_cols=231  Identities=17%  Similarity=0.109  Sum_probs=123.4

Q ss_pred             cCceEEEEeccCCCCccCC-ccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      +++++|++..+...  .++ ..+..+++|++|+|++|.+...+.+..+++|++|++++|.++.      +..+++|++|+
T Consensus        34 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEEE
T ss_pred             CCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEEE
Confidence            46777777765433  233 4566677788888877776433336677777777777776632      22346777777


Q ss_pred             EeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHH
Q 009416          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (535)
Q Consensus       193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~  271 (535)
                      +++|.. ..+....+++|+.|++++|                     . ....+..+..+++|+.|++++|.+.+..+..
T Consensus       106 l~~n~l-~~~~~~~~~~L~~L~l~~N---------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A          106 AANNNI-SRVSCSRGQGKKNIYLANN---------------------KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             CCSSCC-SEEEECCCSSCEEEECCSS---------------------CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             CCCCcc-CCcCccccCCCCEEECCCC---------------------CCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            777643 3333333455555555555                     3 1111223444555555555555554433333


Q ss_pred             hcCCCCCccEEEeecCCCCccccc--CCCCCceEEeccCcccccc---cccCCceeeEEEcCcch----hhcccCcccce
Q 009416          272 GISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI----SFSSNALSLSE  342 (535)
Q Consensus       272 l~~~~~~L~~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~l---~~~~p~L~~L~~~g~~~----~~~~~l~~L~~  342 (535)
                      +...+++|+.|+++++.. +.++.  ..++|+.|+++++. +..+   ....++|+.|.++++..    ..+..+++|+.
T Consensus       164 ~~~~l~~L~~L~L~~N~l-~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~  241 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFI-YDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH  241 (317)
T ss_dssp             GGGGTTTCCEEECTTSCC-CEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred             HhhccCcCCEEECCCCcC-cccccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence            333455555555555432 11111  23455555554432 1111   11334555666555543    33556778888


Q ss_pred             eEEEEecccchhhHhHHHHHhhhhcccccceeEEEE-eeccc
Q 009416          343 TSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQ-CREGE  383 (535)
Q Consensus       343 L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~-~~~l~  383 (535)
                      ++++.+....   ..++.++.   .+++|+ .|.+. ++.++
T Consensus       242 L~l~~N~~~~---~~~~~~~~---~~~~L~-~l~l~~~~~l~  276 (317)
T 3o53_A          242 FDLRGNGFHC---GTLRDFFS---KNQRVQ-TVAKQTVKKLT  276 (317)
T ss_dssp             EECTTCCCBH---HHHHHHHH---TCHHHH-HHHHHHHHHHH
T ss_pred             EEccCCCccC---cCHHHHHh---ccccce-EEECCCchhcc
Confidence            8776554331   15566666   777777 55555 33343

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.44  E-value=3.8e-14  Score=138.90  Aligned_cols=194  Identities=11%  Similarity=0.046  Sum_probs=144.2

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc--CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      .++++.|++..+..-...+|..+..+++|++|+|++|.+.  .+..+..+++|++|++++|.+... ++..+..+++|++
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~  153 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence            4689999998522233468888999999999999999884  446688999999999999988432 2334678999999


Q ss_pred             EEEeecCCCcee--eeCCCC-CccEEEEeecCCccEEe--ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCC
Q 009416          191 LEIRSCEGLESL--DLVNLS-NLKEIILVNTSDIKRVE--IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPI  264 (535)
Q Consensus       191 L~L~~c~~l~~~--~~~~l~-~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~  264 (535)
                      |++++|...+.+  .+..++ +|+.|++++|.--...+  +...+|+.|+++++. ....+..+..+++|+.|+++++.+
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            999999764343  456666 99999999882211111  222239999999987 444556788999999999999988


Q ss_pred             ChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCc
Q 009416          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCD  309 (535)
Q Consensus       265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~  309 (535)
                      ++....  +..+++|+.|+++++...+.++.   ..++|+.|+++++.
T Consensus       234 ~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          234 AFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             CCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             eeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            754333  67789999999999865544443   34677777777653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.43  E-value=7e-13  Score=141.20  Aligned_cols=236  Identities=17%  Similarity=0.078  Sum_probs=161.6

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ++++.|++..+...  .+|.   .+++|++|+|++|.+...+.  .+++|++|++++|.++.  ++   ..+++|+.|++
T Consensus        61 ~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~---~~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--LP---ALPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--CC---CCCTTCCEEEC
T ss_pred             CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--CC---CCCCCcCEEEC
Confidence            58999999887543  5776   46899999999998854333  78999999999998743  11   15788999999


Q ss_pred             eecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhc
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI  273 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~  273 (535)
                      ++|.. ..+.. .+++|++|++++| .+..++...++|+.|.+.++....++   ..+++|+.|++++|.++.     +.
T Consensus       129 ~~N~l-~~lp~-~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-----l~  197 (622)
T 3g06_A          129 FGNQL-TSLPV-LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-----LP  197 (622)
T ss_dssp             CSSCC-SCCCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-----CC
T ss_pred             CCCCC-CcCCC-CCCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-----CC
Confidence            88853 33322 2488999999888 33333335678888888887733333   456788888888887764     12


Q ss_pred             CCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-hhcccCcccceeEEEEecccc
Q 009416          274 SKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-SFSSNALSLSETSLCFSSHLM  352 (535)
Q Consensus       274 ~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-~~~~~l~~L~~L~l~~~~~~~  352 (535)
                      ...++|+.|++.++. ++.++...++|+.|+++++ ++..+....++|+.|.++++.. ..-..+++|+.|+++.+... 
T Consensus       198 ~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-  274 (622)
T 3g06_A          198 TLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-  274 (622)
T ss_dssp             CCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-
T ss_pred             CccchhhEEECcCCc-ccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-
Confidence            345788888888753 4455555677888888766 4555555567888888887765 11115667888887655222 


Q ss_pred             hhhHhHHHHHhhhhcccccceeEEEEeeccc
Q 009416          353 VNIEWVVEYFEILAMFQKFSKVLNLQCREGE  383 (535)
Q Consensus       353 ~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~  383 (535)
                          .++..+.   ++++|+ .|.++.|.+.
T Consensus       275 ----~lp~~l~---~l~~L~-~L~L~~N~l~  297 (622)
T 3g06_A          275 ----RLPESLI---HLSSET-TVNLEGNPLS  297 (622)
T ss_dssp             ----SCCGGGG---GSCTTC-EEECCSCCCC
T ss_pred             ----cCCHHHh---hccccC-EEEecCCCCC
Confidence                2334455   788888 7777766665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.42  E-value=2.8e-14  Score=141.25  Aligned_cols=174  Identities=18%  Similarity=0.199  Sum_probs=111.7

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeE-eeChhHHHHHHhCCCccc
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREV-CADDQAIASLISGCPLIE  189 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~-~~~~~~l~~~~~~~p~Le  189 (535)
                      .+++++|++..+......+|..+..+++|++|+|++|.+..  +..+..+++|++|++++| .+++..+...+..+++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            46899999988765444477778889999999999998742  245677999999999999 567777888889999999


Q ss_pred             EEEEeecCCCcee----eeCCCC-CccEEEEeecC-Ccc-----EEeecCCcccEEEEeeec--ccCeEEecCcccccce
Q 009416          190 YLEIRSCEGLESL----DLVNLS-NLKEIILVNTS-DIK-----RVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKC  256 (535)
Q Consensus       190 ~L~L~~c~~l~~~----~~~~l~-~L~~L~l~~c~-~l~-----~~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~  256 (535)
                      +|++++|..+...    .+..++ +|++|++++|. .+.     .....+++|++|+++++.  .......+..+++|+.
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~  251 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  251 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence            9999999555432    244567 88888887773 221     111144555555555544  1112223444455555


Q ss_pred             eEeecc-CCChHHHHHhcCCCCCccEEEeecC
Q 009416          257 LKFDFL-PIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       257 L~L~~~-~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      |++++| .+.+..+.. +.++++|+.|++.+|
T Consensus       252 L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          252 LSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             eeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc
Confidence            555544 233332222 334555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.40  E-value=1.8e-13  Score=141.41  Aligned_cols=225  Identities=18%  Similarity=0.140  Sum_probs=125.2

Q ss_pred             CccCCccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---
Q 009416          128 RRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---  202 (535)
Q Consensus       128 ~~~lp~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---  202 (535)
                      ...+|..+.  +++++|+|++|.+..  +..+.++++|++|+|++|.++... ...+.++++|++|+|++|... .+   
T Consensus        66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~  141 (452)
T 3zyi_A           66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLT-VIPSG  141 (452)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCS-BCCTT
T ss_pred             cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCC-ccChh
Confidence            335565432  577778887776632  245667777777777777663221 122456777777777776432 21   


Q ss_pred             eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCCccE
Q 009416          203 DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY  281 (535)
Q Consensus       203 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~  281 (535)
                      .+..+++|++|++++|                     ....+ ...+..+++|+.|+++++..........+.++++|+.
T Consensus       142 ~~~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  200 (452)
T 3zyi_A          142 AFEYLSKLRELWLRNN---------------------PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY  200 (452)
T ss_dssp             TSSSCTTCCEEECCSC---------------------CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred             hhcccCCCCEEECCCC---------------------CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence            1233344444444333                     20000 1124455556666665533322222223445566666


Q ss_pred             EEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhH
Q 009416          282 LSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIE  356 (535)
Q Consensus       282 L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~  356 (535)
                      |+++++.. +.++.                   ....++|+.|+++++..     ..+.++++|+.|++..+....    
T Consensus       201 L~L~~n~l-~~~~~-------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~----  256 (452)
T 3zyi_A          201 LNLGMCNI-KDMPN-------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL----  256 (452)
T ss_dssp             EECTTSCC-SSCCC-------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE----
T ss_pred             EECCCCcc-ccccc-------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce----
Confidence            66655421 11111                   11334666666666554     467889999999996553333    


Q ss_pred             hHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416          357 WVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT  411 (535)
Q Consensus       357 ~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~  411 (535)
                      ..+..+.   ++++|+ .|.|+.|.++  .+|+.    .+..+++|++|+|...+
T Consensus       257 ~~~~~~~---~l~~L~-~L~L~~N~l~--~~~~~----~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          257 IERNAFD---GLASLV-ELNLAHNNLS--SLPHD----LFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             ECTTTTT---TCTTCC-EEECCSSCCS--CCCTT----SSTTCTTCCEEECCSSC
T ss_pred             ECHHHhc---CCCCCC-EEECCCCcCC--ccChH----HhccccCCCEEEccCCC
Confidence            2234456   789999 8888877776  45542    45578899999997544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.40  E-value=9.2e-13  Score=130.06  Aligned_cols=248  Identities=17%  Similarity=0.119  Sum_probs=101.9

Q ss_pred             CceEEEEeccCCCCccCCc-cccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          115 EVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      +++.|++..+...  .+|. .+..+++|++|+|++|.+..  +..+..+++|++|++++|.++.  ++.  ..+++|++|
T Consensus        53 ~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L~~L  126 (330)
T 1xku_A           53 DTALLDLQNNKIT--EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTLQEL  126 (330)
T ss_dssp             TCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTCCEE
T ss_pred             CCeEEECCCCcCC--EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccccEE
Confidence            4455554443321  2332 34445555555555554422  1334455555555555554421  110  112455555


Q ss_pred             EEeecCCCcee--eeCCCCCccEEEEeecCCc----cEEe-ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCC
Q 009416          192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDI----KRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (535)
Q Consensus       192 ~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l----~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~  264 (535)
                      ++++|......  .+..+++|+.|++++|.--    .... ..+++|+.|+++++....++..+  .++|+.|+++++.+
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l  204 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKI  204 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCC
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCcC
Confidence            55554322111  2334455555555544110    0000 13445555555544411111111  14555555555544


Q ss_pred             ChHHHHHhcCCCCCccEEEeecCCCCcccc---cCCCCCceEEeccCccccccc---ccCCceeeEEEcCcch-----hh
Q 009416          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SF  333 (535)
Q Consensus       265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~---~~~~~L~~L~l~~c~~L~~l~---~~~p~L~~L~~~g~~~-----~~  333 (535)
                      .+..... +..+++|+.|+++++...+..+   ...++|+.|+++++. +..+.   ...++|+.|.++++..     ..
T Consensus       205 ~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~  282 (330)
T 1xku_A          205 TKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSND  282 (330)
T ss_dssp             CEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             CccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhh
Confidence            4322222 3445555555555543211111   022455555555442 22221   1334555555555443     11


Q ss_pred             c------ccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEE
Q 009416          334 S------SNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQ  378 (535)
Q Consensus       334 ~------~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~  378 (535)
                      +      ...++|+.+++..++...  ....+..+.   .+++++ .+.++
T Consensus       283 f~~~~~~~~~~~l~~l~l~~N~~~~--~~i~~~~f~---~~~~l~-~l~L~  327 (330)
T 1xku_A          283 FCPPGYNTKKASYSGVSLFSNPVQY--WEIQPSTFR---CVYVRA-AVQLG  327 (330)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSCG--GGSCGGGGT---TCCCGG-GEEC-
T ss_pred             cCCcccccccccccceEeecCcccc--cccCccccc---ccccee-EEEec
Confidence            1      123556666665443221  011123334   566677 66554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.40  E-value=2e-13  Score=140.55  Aligned_cols=226  Identities=19%  Similarity=0.213  Sum_probs=132.5

Q ss_pred             CCccCCccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--
Q 009416          127 ERRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--  202 (535)
Q Consensus       127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--  202 (535)
                      ....+|..+.  ++++.|+|++|.+..  +..+.++++|++|+|++|.+..-.. ..+.++++|++|+|++|... .+  
T Consensus        54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~-~~~~  129 (440)
T 3zyj_A           54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLT-TIPN  129 (440)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCS-SCCT
T ss_pred             CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCC-eeCH
Confidence            3445666543  678888888887732  2556778888888888876632211 23567778888888777432 22  


Q ss_pred             -eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCCcc
Q 009416          203 -DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE  280 (535)
Q Consensus       203 -~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~  280 (535)
                       .+..+++|++|++++|                     ....+ ...+..+++|+.|+++++..........+.++++|+
T Consensus       130 ~~~~~l~~L~~L~L~~N---------------------~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~  188 (440)
T 3zyj_A          130 GAFVYLSKLKELWLRNN---------------------PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR  188 (440)
T ss_dssp             TTSCSCSSCCEEECCSC---------------------CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred             hHhhccccCceeeCCCC---------------------cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence             2333444444444433                     21100 123556667777777664433333333355667777


Q ss_pred             EEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhh
Q 009416          281 YLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNI  355 (535)
Q Consensus       281 ~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~  355 (535)
                      .|+++++. ++.++.                   ....++|+.|+++++..     ..+.++++|+.|++..+....   
T Consensus       189 ~L~L~~n~-l~~~~~-------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~---  245 (440)
T 3zyj_A          189 YLNLAMCN-LREIPN-------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV---  245 (440)
T ss_dssp             EEECTTSC-CSSCCC-------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE---
T ss_pred             eecCCCCc-Cccccc-------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE---
Confidence            77777653 222221                   01234555566655543     467789999999996553332   


Q ss_pred             HhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416          356 EWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT  411 (535)
Q Consensus       356 ~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~  411 (535)
                       ..+..+.   ++++|+ .|.|+.|.++  .+|+.    .+..+++|++|+|...+
T Consensus       246 -~~~~~~~---~l~~L~-~L~L~~N~l~--~~~~~----~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          246 -IERNAFD---NLQSLV-EINLAHNNLT--LLPHD----LFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             -ECTTSST---TCTTCC-EEECTTSCCC--CCCTT----TTSSCTTCCEEECCSSC
T ss_pred             -EChhhhc---CCCCCC-EEECCCCCCC--ccChh----HhccccCCCEEEcCCCC
Confidence             2234445   789999 8888877776  44442    45678899999997544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.38  E-value=1.1e-12  Score=135.35  Aligned_cols=214  Identities=16%  Similarity=0.058  Sum_probs=152.1

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      ++++.|++..+.... -.|..+..+++|++|+|++|.+...  ..+..+++|++|+|++|.++.- ....+..+++|++|
T Consensus        75 ~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEE
Confidence            589999998765432 2345677899999999999988432  5678899999999999987432 12336789999999


Q ss_pred             EEeecCCCcee---eeCCCCCccEEEEeecCCccEEee----cCCcccEEEEeeecccCeEEecCcccccceeEeeccCC
Q 009416          192 EIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (535)
Q Consensus       192 ~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~  264 (535)
                      ++++|... .+   .+..+++|+.|++++|..+..+..    .+++|+.|+++++....+ ..+..+++|+.|+|++|.+
T Consensus       153 ~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcC
Confidence            99999743 33   456789999999999877777753    678999999998873322 3577888999999999888


Q ss_pred             ChHHHHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccc
Q 009416          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLS  341 (535)
Q Consensus       265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~  341 (535)
                      .+..... +.++++|+.|++.++......+.   ..++|+.|+++++ ++..+..               ..+.++++|+
T Consensus       231 ~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---------------~~~~~l~~L~  293 (452)
T 3zyi_A          231 PEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH---------------DLFTPLRYLV  293 (452)
T ss_dssp             SEECGGG-GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT---------------TSSTTCTTCC
T ss_pred             cccCccc-ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccCh---------------HHhccccCCC
Confidence            7654433 67889999999988653222221   2345666666554 2222211               2345677888


Q ss_pred             eeEEEEe
Q 009416          342 ETSLCFS  348 (535)
Q Consensus       342 ~L~l~~~  348 (535)
                      .|+++.+
T Consensus       294 ~L~L~~N  300 (452)
T 3zyi_A          294 ELHLHHN  300 (452)
T ss_dssp             EEECCSS
T ss_pred             EEEccCC
Confidence            8888655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.38  E-value=1.2e-13  Score=135.53  Aligned_cols=235  Identities=14%  Similarity=0.089  Sum_probs=142.9

Q ss_pred             cCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEee
Q 009416          159 KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQ  238 (535)
Q Consensus       159 ~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~  238 (535)
                      .+++|++|++++|.++... +..+..+++|++|++++|...+...+..+++|++|++++| .+..+. ..++|+.|++++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n-~l~~l~-~~~~L~~L~l~~  108 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELL-VGPSIETLHAAN  108 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS-EEEEEE-ECTTCCEEECCS
T ss_pred             cCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC-cccccc-CCCCcCEEECCC
Confidence            4556777777776664322 2235667777777777776544445666777777777766 233332 347788888877


Q ss_pred             ecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCcccccc
Q 009416          239 TYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQV  314 (535)
Q Consensus       239 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l  314 (535)
                      +.....  ....+++|+.|+++++.+....... +..+++|+.|+++++......+.    ..++|+.|+++++. +..+
T Consensus       109 n~l~~~--~~~~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~  184 (317)
T 3o53_A          109 NNISRV--SCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV  184 (317)
T ss_dssp             SCCSEE--EECCCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred             CccCCc--CccccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence            762221  2344788999999988887643322 45678889998888643221111    23455555555442 1111


Q ss_pred             cccCCceeeEEEcCcchhhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeecccccccccccccc
Q 009416          315 EIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQI  394 (535)
Q Consensus       315 ~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~  394 (535)
                                       .....+++|+.|+++.+....     ++..+.   .+++|+ .|.++.+.++  .+|+     
T Consensus       185 -----------------~~~~~l~~L~~L~Ls~N~l~~-----l~~~~~---~l~~L~-~L~L~~N~l~--~l~~-----  231 (317)
T 3o53_A          185 -----------------KGQVVFAKLKTLDLSSNKLAF-----MGPEFQ---SAAGVT-WISLRNNKLV--LIEK-----  231 (317)
T ss_dssp             -----------------ECCCCCTTCCEEECCSSCCCE-----ECGGGG---GGTTCS-EEECTTSCCC--EECT-----
T ss_pred             -----------------ccccccccCCEEECCCCcCCc-----chhhhc---ccCccc-EEECcCCccc--chhh-----
Confidence                             122247778888886553332     122245   789999 8888877766  5776     


Q ss_pred             CCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEe
Q 009416          395 QSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIE  450 (535)
Q Consensus       395 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~  450 (535)
                      .+..+++|++|+++..+              +  .- ..+..++..+|+|+.+.+.
T Consensus       232 ~~~~l~~L~~L~l~~N~--------------~--~~-~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNG--------------F--HC-GTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TCCCCTTCCEEECTTCC--------------C--BH-HHHHHHHHTCHHHHHHHHH
T ss_pred             HhhcCCCCCEEEccCCC--------------c--cC-cCHHHHHhccccceEEECC
Confidence            66778899999996332              1  00 1222266667888888776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.38  E-value=2.2e-12  Score=132.97  Aligned_cols=257  Identities=14%  Similarity=0.108  Sum_probs=169.8

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      +++++|++..+...  .+| .+..+++|++|++++|.+...+.  ..++|++|++++|.+..  ++. ++.+++|++|++
T Consensus       131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Ccc-ccCCCCCCEEEC
Confidence            57888888876544  477 58889999999999998854322  34699999999998854  232 678999999999


Q ss_pred             eecCCCceeeeCCCCCccEEEEeec--CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHH
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~  271 (535)
                      ++|...+ +. ...++|+.|++++|  ..+.. ...+++|+.|+++++.-..++.   ..++|+.|+++++.+.+     
T Consensus       203 ~~N~l~~-l~-~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-----  271 (454)
T 1jl5_A          203 DNNSLKK-LP-DLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-----  271 (454)
T ss_dssp             CSSCCSS-CC-CCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-----
T ss_pred             CCCcCCc-CC-CCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-----
Confidence            9996433 21 11268999999998  22322 1278899999999887222221   34789999999988775     


Q ss_pred             hcCCCCCccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhc-ccCcccceeEEEEecc
Q 009416          272 GISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFS-SNALSLSETSLCFSSH  350 (535)
Q Consensus       272 l~~~~~~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~-~~l~~L~~L~l~~~~~  350 (535)
                      +....++|+.|+++++. ++.++...++|+.|+++++. +..+....++|+.|.++++....+ ..+++|+.|+++.+..
T Consensus       272 l~~~~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~-l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l  349 (454)
T 1jl5_A          272 LPELPQSLTFLDVSENI-FSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHL  349 (454)
T ss_dssp             CCCCCTTCCEEECCSSC-CSEESCCCTTCCEEECCSSC-CSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             cCcccCcCCEEECcCCc-cCcccCcCCcCCEEECcCCc-CCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCcc
Confidence            12345789999999865 44444445789999998764 333332235899999988766212 2357899998865532


Q ss_pred             cchhhHhHHHHHhhhhcccccceeEEEEeeccccc--cccccccccCCCCc-------------ccceeeEEEE
Q 009416          351 LMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENV--IVPQELRQIQSPPL-------------TSVKKLNYSV  409 (535)
Q Consensus       351 ~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~--~~p~~~~~~~~~~l-------------~~L~~L~l~~  409 (535)
                      ..     ++.      .+++|+ .|.++.+.+. +  .+|.     .+..+             ++|++|+++.
T Consensus       350 ~~-----lp~------~l~~L~-~L~L~~N~l~-~l~~ip~-----~l~~L~~n~~~~~i~~~~~~L~~L~ls~  405 (454)
T 1jl5_A          350 AE-----VPE------LPQNLK-QLHVEYNPLR-EFPDIPE-----SVEDLRMNSHLAEVPELPQNLKQLHVET  405 (454)
T ss_dssp             SC-----CCC------CCTTCC-EEECCSSCCS-SCCCCCT-----TCCEEECCC-------------------
T ss_pred             cc-----ccc------hhhhcc-EEECCCCCCC-cCCCChH-----HHHhhhhcccccccccccCcCCEEECCC
Confidence            22     121      267889 8888877766 3  4555     33333             6889999874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.37  E-value=1.8e-13  Score=136.47  Aligned_cols=89  Identities=18%  Similarity=0.138  Sum_probs=55.0

Q ss_pred             CCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--
Q 009416          127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--  202 (535)
Q Consensus       127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--  202 (535)
                      ....+|..+.  ++|++|++++|.+...  ..+..+++|++|++++|.++... ...+..+++|++|++++|....-.  
T Consensus        42 ~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~  118 (353)
T 2z80_A           42 SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLSSS  118 (353)
T ss_dssp             TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred             Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCCHh
Confidence            3446666543  5788888888877432  35677888888888887664311 122566778888888777543211  


Q ss_pred             eeCCCCCccEEEEeec
Q 009416          203 DLVNLSNLKEIILVNT  218 (535)
Q Consensus       203 ~~~~l~~L~~L~l~~c  218 (535)
                      .+..+++|++|++++|
T Consensus       119 ~~~~l~~L~~L~L~~n  134 (353)
T 2z80_A          119 WFKPLSSLTFLNLLGN  134 (353)
T ss_dssp             HHTTCTTCSEEECTTC
T ss_pred             HhCCCccCCEEECCCC
Confidence            2445566666666555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.37  E-value=2.7e-13  Score=146.04  Aligned_cols=221  Identities=13%  Similarity=0.062  Sum_probs=111.5

Q ss_pred             ccccceeEeeccCCChHH-HHHhcCCCCCccEEEeecCCCCcccc--cCCCCCceEEeccCcccccc----cccCCceee
Q 009416          251 CGNLKCLKFDFLPIEDEW-LCNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLIQV----EIETPNLSI  323 (535)
Q Consensus       251 l~~L~~L~L~~~~~~~~~-l~~l~~~~~~L~~L~L~~c~~l~~l~--~~~~~L~~L~l~~c~~L~~l----~~~~p~L~~  323 (535)
                      +++|+.|+++.+.+.... .......+++|+.|++..+.......  ...++|+.+++..+......    ....++|+.
T Consensus       370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~  449 (635)
T 4g8a_A          370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  449 (635)
T ss_dssp             CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred             ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            445555555544443210 00112234455555555432211111  12345666665544332111    123456666


Q ss_pred             EEEcCcch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCC
Q 009416          324 FKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPP  398 (535)
Q Consensus       324 L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~  398 (535)
                      +.++++..     ..+..+++|+.|++..+....   ...++.+.   .+++|+ .|.++.+.++ ...|.     .+..
T Consensus       450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~---~~~~~~~~---~l~~L~-~L~Ls~N~L~-~l~~~-----~f~~  516 (635)
T 4g8a_A          450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE---NFLPDIFT---ELRNLT-FLDLSQCQLE-QLSPT-----AFNS  516 (635)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG---GEECSCCT---TCTTCC-EEECTTSCCC-EECTT-----TTTT
T ss_pred             ccccccccccccccccccchhhhhhhhhhccccc---ccCchhhh---hccccC-EEECCCCccC-CcChH-----HHcC
Confidence            66665543     345567778887775432111   02234455   788888 8877766666 33444     5667


Q ss_pred             cccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecCCCcceeeehh-----hhhhhhcCCC
Q 009416          399 LTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGHLHKFSFQISY-----KKQLIYDGEI  473 (535)
Q Consensus       399 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~~~~~~~~~~~-----~~~l~~~~~~  473 (535)
                      +++|++|+|+.                  ..+..+....|..+++|+.|.+..+.....+.+...     -+.+...+.+
T Consensus       517 l~~L~~L~Ls~------------------N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          517 LSSLQVLNMSH------------------NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CTTCCEEECTT------------------SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCCCCEEECCC------------------CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            88888888852                  123334444667778899988875543222211110     0113344566


Q ss_pred             Ccc-ccCCCcccccccccceeeeeecceeec
Q 009416          474 PRC-CQSLPVSCWQHCINEVKVEHTKSLSIT  503 (535)
Q Consensus       474 ~~~-~~~~~~~~~~~~lk~v~i~~~~~~~~~  503 (535)
                      ..| |...+...|...- ...+.+...+.|.
T Consensus       579 ~~C~C~~~~~~~wl~~~-~~~~~~~~~~~C~  608 (635)
T 4g8a_A          579 FACTCEHQSFLQWIKDQ-RQLLVEVERMECA  608 (635)
T ss_dssp             BCCSGGGHHHHHHHHHT-TTTBSCGGGCBBC
T ss_pred             CcccCCcHHHHHHHHhC-CCccCCCCCceeC
Confidence            666 8776666665322 2234445566663

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.37  E-value=4.2e-13  Score=132.64  Aligned_cols=261  Identities=16%  Similarity=0.042  Sum_probs=158.2

Q ss_pred             cCceEEEEeccCCCCccCC-ccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      ++++.|++..+...  .++ ..+..+++|++|+|++|.+..  +..+..+++|++|++++|.++.  ++.  ..+++|++
T Consensus        54 ~~l~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~  127 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS--ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVE  127 (332)
T ss_dssp             TTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCE
T ss_pred             CCCeEEECCCCcCC--ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCE
Confidence            58999999876533  443 467889999999999998843  2567889999999999998742  221  22389999


Q ss_pred             EEEeecCCCcee--eeCCCCCccEEEEeecCC----ccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCC
Q 009416          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSD----IKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (535)
Q Consensus       191 L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~  264 (535)
                      |++++|....-.  .+..+++|+.|+++++.-    .....+...+|+.|+++++....++..+  .++|+.|+++++.+
T Consensus       128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKI  205 (332)
T ss_dssp             EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCC
T ss_pred             EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccc--cCCCCEEECCCCcC
Confidence            999998653221  366789999999988732    1111122227888888877622223222  26788888888877


Q ss_pred             ChHHHHHhcCCCCCccEEEeecCCCCcccc---cCCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccc
Q 009416          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLS  341 (535)
Q Consensus       265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~---~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~  341 (535)
                      ....... +..+++|+.|+++++......+   ...++|+.|+++++. +..+.                ..+.++++|+
T Consensus       206 ~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp----------------~~l~~l~~L~  267 (332)
T 2ft3_A          206 QAIELED-LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVP----------------AGLPDLKLLQ  267 (332)
T ss_dssp             CCCCTTS-STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCC----------------TTGGGCTTCC
T ss_pred             CccCHHH-hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecC----------------hhhhcCccCC
Confidence            6543333 5677888888888754322111   133456666665542 22111                2355677777


Q ss_pred             eeEEEEecccchhhHhHHHH--HhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416          342 ETSLCFSSHLMVNIEWVVEY--FEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS  408 (535)
Q Consensus       342 ~L~l~~~~~~~~~~~~l~~~--l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~  408 (535)
                      .|+++.+.........+...  ..   ..++++ .|.+..+.+....+++.    .+..+++|+.|+++
T Consensus       268 ~L~l~~N~l~~~~~~~~~~~~~~~---~~~~l~-~L~l~~N~~~~~~~~~~----~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          268 VVYLHTNNITKVGVNDFCPVGFGV---KRAYYN-GISLFNNPVPYWEVQPA----TFRCVTDRLAIQFG  328 (332)
T ss_dssp             EEECCSSCCCBCCTTSSSCSSCCS---SSCCBS-EEECCSSSSCGGGSCGG----GGTTBCCSTTEEC-
T ss_pred             EEECCCCCCCccChhHcccccccc---cccccc-ceEeecCcccccccCcc----cccccchhhhhhcc
Confidence            77775542222000011000  01   245677 77776555443334432    45567788888875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.36  E-value=1.2e-12  Score=134.62  Aligned_cols=227  Identities=15%  Similarity=0.103  Sum_probs=152.3

Q ss_pred             cCceEEEEeccCCCCccCC-ccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      .+++.|++..+...  .++ ..+..+++|++|+|++|.+...  ..+..+++|++|+|++|.++.-. ...+..+++|++
T Consensus        64 ~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ--IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCCC--EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred             CCCcEEEccCCcCC--eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence            57888988876533  333 4677889999999999987432  45778999999999999874221 223678999999


Q ss_pred             EEEeecCCCcee---eeCCCCCccEEEEeecCCccEEee----cCCcccEEEEeeecccCeEEecCcccccceeEeeccC
Q 009416          191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP  263 (535)
Q Consensus       191 L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~  263 (535)
                      |+|++|... .+   .+..+++|+.|++.+|..+..+..    .+++|+.|+++++....++ .+..+++|+.|+|++|.
T Consensus       141 L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNH  218 (440)
T ss_dssp             EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSC
T ss_pred             eeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCc
Confidence            999998743 33   456789999999999877766653    5788899998888733322 47778888899998888


Q ss_pred             CChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcc
Q 009416          264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALS  339 (535)
Q Consensus       264 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~  339 (535)
                      ++...... +.++++|+.|++.++.. +.+..    ..++|+.|+++++. +..+..               ..+.++++
T Consensus       219 l~~~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---------------~~~~~l~~  280 (440)
T 3zyj_A          219 LSAIRPGS-FQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNN-LTLLPH---------------DLFTPLHH  280 (440)
T ss_dssp             CCEECTTT-TTTCTTCCEEECTTCCC-CEECTTSSTTCTTCCEEECTTSC-CCCCCT---------------TTTSSCTT
T ss_pred             cCccChhh-hccCccCCEEECCCCce-eEEChhhhcCCCCCCEEECCCCC-CCccCh---------------hHhccccC
Confidence            77643333 67788888888887543 22221    23455555555431 211111               23556788


Q ss_pred             cceeEEEEecccc-hhhHhHHHHHh
Q 009416          340 LSETSLCFSSHLM-VNIEWVVEYFE  363 (535)
Q Consensus       340 L~~L~l~~~~~~~-~~~~~l~~~l~  363 (535)
                      |+.|+++.++... -...++..++.
T Consensus       281 L~~L~L~~Np~~CdC~l~~l~~~~~  305 (440)
T 3zyj_A          281 LERIHLHHNPWNCNCDILWLSWWIK  305 (440)
T ss_dssp             CCEEECCSSCEECSSTTHHHHHHHH
T ss_pred             CCEEEcCCCCccCCCCchHHHHHHH
Confidence            8888886553222 01235555555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.35  E-value=2.1e-12  Score=126.18  Aligned_cols=163  Identities=20%  Similarity=0.189  Sum_probs=95.3

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      .+++++|++..+...  .+| .+..+++|++|+|++|.+...+.+..+++|++|++++|.++.-  . .+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~--~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCcc--Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEE
Confidence            458888888776433  455 4667888999999988875554478888999999988887432  2 267788888888


Q ss_pred             EeecCCCceeeeCCCCCccEEEEeecC--CccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416          193 IRSCEGLESLDLVNLSNLKEIILVNTS--DIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (535)
Q Consensus       193 L~~c~~l~~~~~~~l~~L~~L~l~~c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~  270 (535)
                      +++|....-..+..+++|+.|++++|.  .+.. ...+++|+.|+++++....... +..+++|+.|+++++.+.+... 
T Consensus       114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-  190 (308)
T 1h6u_A          114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-  190 (308)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence            888864332245566777777776661  1111 1134455555555444111111 4444445555554444433211 


Q ss_pred             HhcCCCCCccEEEeec
Q 009416          271 NGISKLPLLEYLSMTK  286 (535)
Q Consensus       271 ~l~~~~~~L~~L~L~~  286 (535)
                        +..+++|+.|++++
T Consensus       191 --l~~l~~L~~L~L~~  204 (308)
T 1h6u_A          191 --LASLPNLIEVHLKN  204 (308)
T ss_dssp             --GGGCTTCCEEECTT
T ss_pred             --hcCCCCCCEEEccC
Confidence              23344444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.34  E-value=9.5e-13  Score=137.00  Aligned_cols=218  Identities=20%  Similarity=0.143  Sum_probs=158.5

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ++++.|++..+.... -.|..+..+++|++|+|++|.+...+.+..+++|++|+|++|.++.      +...++|++|++
T Consensus        34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred             CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence            489999998875442 2345778899999999999988544448899999999999998853      234589999999


Q ss_pred             eecCCCceeeeCCCCCccEEEEeec--CCccEEee-cCCcccEEEEeeec-ccCeEEecC-cccccceeEeeccCCChHH
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEI-KTSNVNALAIHQTY-LFPIEVNVS-SCGNLKCLKFDFLPIEDEW  268 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c--~~l~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~-~l~~L~~L~L~~~~~~~~~  268 (535)
                      ++|... .+....+++|+.|++++|  ..+....+ .+++|+.|+++++. .+..+..+. .+++|+.|+|++|.+++. 
T Consensus       107 ~~N~l~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          107 ANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             CSSCCC-CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             cCCcCC-CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            999653 444456789999999998  33333333 68999999999988 333334444 789999999999998765 


Q ss_pred             HHHhcCCCCCccEEEeecCCCCccccc---CCCCCceEEeccCccccccc---ccCCceeeEEEcCcch------hhccc
Q 009416          269 LCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI------SFSSN  336 (535)
Q Consensus       269 l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~---~~~p~L~~L~~~g~~~------~~~~~  336 (535)
                       .. ...+++|+.|+++++.- +.++.   ..++|+.|+++++. +..++   ...++|+.+.+.|+..      ..+..
T Consensus       185 -~~-~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~  260 (487)
T 3oja_A          185 -KG-QVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (487)
T ss_dssp             -EC-CCCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred             -cc-cccCCCCCEEECCCCCC-CCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence             22 34689999999999753 33433   45789999998864 33333   2457899999998765      23445


Q ss_pred             CcccceeE
Q 009416          337 ALSLSETS  344 (535)
Q Consensus       337 l~~L~~L~  344 (535)
                      ++.|+.++
T Consensus       261 l~~L~~l~  268 (487)
T 3oja_A          261 NQRVQTVA  268 (487)
T ss_dssp             CHHHHHHH
T ss_pred             CCCCcEEe
Confidence            55555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.34  E-value=2.6e-12  Score=125.52  Aligned_cols=143  Identities=18%  Similarity=0.152  Sum_probs=88.5

Q ss_pred             cCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEE
Q 009416          136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL  215 (535)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l  215 (535)
                      ..+++|++|++++|.+...+.+..+++|++|++++|.+.+-.  . +..+++|++|++++|..-.--.+..+++|+.|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l  114 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEEC
T ss_pred             HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEEC
Confidence            346899999999998866567889999999999999884322  2 7889999999999997433224666777888877


Q ss_pred             eecC--CccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeec
Q 009416          216 VNTS--DIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (535)
Q Consensus       216 ~~c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~  286 (535)
                      ++|.  .+.. ...+++|+.|+++++.....+ .+..+++|+.|+++++.+.+...   +..+++|+.|++++
T Consensus       115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADD  182 (308)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCS
T ss_pred             CCCCCCCchh-hcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCC
Confidence            7762  1111 114455555555555411111 14445555555555554443111   34445555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.32  E-value=2.1e-12  Score=124.71  Aligned_cols=201  Identities=16%  Similarity=0.061  Sum_probs=118.1

Q ss_pred             CccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---
Q 009416          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---  202 (535)
Q Consensus       128 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---  202 (535)
                      ...+|..+  .++|++|+++++.+...  ..+..+++|++|+++++.++... ...+..+++|++|++++|..++.+   
T Consensus        23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence            34556433  46888888888877432  45678888889988888764321 223567888888888888755444   


Q ss_pred             eeCCCCCccEEEEeecCC--ccEE-eecCCcccEEEEeeecccCeE-EecCcccccceeEeeccCCChHHHHHhcCCCCC
Q 009416          203 DLVNLSNLKEIILVNTSD--IKRV-EIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL  278 (535)
Q Consensus       203 ~~~~l~~L~~L~l~~c~~--l~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~  278 (535)
                      .+..+++|++|++++|.-  +..- ...+++|++|+++++.....+ ..+..+++|+.|+++++.++.... ..+..+++
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~  178 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHS  178 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTT
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccc
Confidence            355667888888877721  1111 114567777777766622222 235667777777777776654222 22456677


Q ss_pred             ccEEEeecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEe
Q 009416          279 LEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFS  348 (535)
Q Consensus       279 L~~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~  348 (535)
                      |+.|+++++...+..+.   ..++|+.|+++++. +..+               ....+.++++|+.++++.+
T Consensus       179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~---------------~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSAL---------------PTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCC---------------CHHHHTTCTTCCEEECCSS
T ss_pred             cCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcC---------------CHHHcccCcccCEEeccCC
Confidence            77777776543222121   12344444444331 1111               0134667888888888655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.30  E-value=4.5e-13  Score=130.78  Aligned_cols=234  Identities=13%  Similarity=0.027  Sum_probs=135.1

Q ss_pred             eEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCce----eeeCCCCCccEEEEee
Q 009416          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES----LDLVNLSNLKEIILVN  217 (535)
Q Consensus       142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~----~~~~~l~~L~~L~l~~  217 (535)
                      +.++.+++.+...+. ...++|++|+++++.++.- ....+..+++|++|++++|.....    ..+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            356677766643322 2347999999999987421 123367899999999999864321    1334567888888887


Q ss_pred             cC--CccEEeecCCcccEEEEeeecccCeE--EecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCc-c
Q 009416          218 TS--DIKRVEIKTSNVNALAIHQTYLFPIE--VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT-S  292 (535)
Q Consensus       218 c~--~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~-~  292 (535)
                      |.  .+......+++|++|+++++......  ..+..+++|+.|+++++.+..... ..+.++++|+.|+++++...+ .
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEEECTTCEEGGGE
T ss_pred             CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccCcCCCEEECCCCcccccc
Confidence            72  11111225667777777666511111  245566666777766665543322 224556666666666643222 1


Q ss_pred             cccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhc
Q 009416          293 VRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAM  367 (535)
Q Consensus       293 l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~  367 (535)
                      ++..                  ....++|+.|.++++..     ..+.++++|+.|+++.+....    .....+.   .
T Consensus       167 ~~~~------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~---~  221 (306)
T 2z66_A          167 LPDI------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS----LDTFPYK---C  221 (306)
T ss_dssp             ECSC------------------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB----CCSGGGT---T
T ss_pred             chhH------------------HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc----cChhhcc---C
Confidence            1111                  11223444444444332     345677888888886553222    1122245   7


Q ss_pred             ccccceeEEEEeeccccccccccccccCCCCc-ccceeeEEEEe
Q 009416          368 FQKFSKVLNLQCREGENVIVPQELRQIQSPPL-TSVKKLNYSVR  410 (535)
Q Consensus       368 l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l-~~L~~L~l~~~  410 (535)
                      +++|+ .|.++.+.+. ...|.     .+..+ ++|++|+++..
T Consensus       222 l~~L~-~L~L~~N~l~-~~~~~-----~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          222 LNSLQ-VLDYSLNHIM-TSKKQ-----ELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             CTTCC-EEECTTSCCC-BCSSS-----SCCCCCTTCCEEECTTC
T ss_pred             cccCC-EeECCCCCCc-ccCHH-----HHHhhhccCCEEEccCC
Confidence            89999 8888877766 44454     45555 48999999643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.27  E-value=2e-12  Score=124.77  Aligned_cols=171  Identities=15%  Similarity=0.142  Sum_probs=123.9

Q ss_pred             hcCceEEEEeccCCCCccCC-ccccCCCceeEEEEeCccccC--CCCcccCcccceeEeeeEe-eChhHHHHHHhCCCcc
Q 009416          113 ESEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVC-ADDQAIASLISGCPLI  188 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~~~~~~p~L  188 (535)
                      .+++++|++..+...  .+| ..+..+++|++|+|++|.+..  +..+..+++|++|++++|. ++.-. ...+..+++|
T Consensus        31 ~~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L  107 (285)
T 1ozn_A           31 PAASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRL  107 (285)
T ss_dssp             CTTCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTC
T ss_pred             CCCceEEEeeCCcCC--ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCC
Confidence            357888888776533  344 356778999999999987732  3567789999999999986 43211 2236778999


Q ss_pred             cEEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---e-cCCcccEEEEeeecccCeEE-ecCcccccceeEeec
Q 009416          189 EYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---I-KTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDF  261 (535)
Q Consensus       189 e~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~-~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~  261 (535)
                      ++|++++|......  .+..+++|++|++++|. +..+.   + .+++|+.|+++++....++. .+..+++|+.|++++
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence            99999998654322  35668899999999882 22222   2 57899999999887322232 477899999999999


Q ss_pred             cCCChHHHHHhcCCCCCccEEEeecCC
Q 009416          262 LPIEDEWLCNGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       262 ~~~~~~~l~~l~~~~~~L~~L~L~~c~  288 (535)
                      +.+.+..+.. +..+++|+.|+++++.
T Consensus       187 n~l~~~~~~~-~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          187 NRVAHVHPHA-FRDLGRLMTLYLFANN  212 (285)
T ss_dssp             SCCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred             CcccccCHhH-ccCcccccEeeCCCCc
Confidence            9887654433 6788999999999864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.25  E-value=3.5e-12  Score=124.82  Aligned_cols=198  Identities=18%  Similarity=0.133  Sum_probs=111.1

Q ss_pred             ceEEEEeccCCCCccCCcccc-------CCCceeEEEEeCccccC--CCCc--ccCcccceeEeeeEeeChh--HHHHHH
Q 009416          116 VKELVLVHWRSERRNLPEIIF-------YVESLHVLELSYCKLQQ--PSEN--VKLFSLRKLALREVCADDQ--AIASLI  182 (535)
Q Consensus       116 l~~L~L~~~~~~~~~lp~~l~-------~~~~L~~L~L~~~~~~~--~~~~--~~l~~L~~L~L~~~~~~~~--~l~~~~  182 (535)
                      ++.|++..+......+|..++       .+++|++|+|++|.+..  +..+  ..+++|++|++++|.++..  .+..+.
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            344444433322335666554       67899999999998852  3333  7889999999999988432  222211


Q ss_pred             -hCCCcccEEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEe
Q 009416          183 -SGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKF  259 (535)
Q Consensus       183 -~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L  259 (535)
                       ...++|++|++++|...+..  .+..+++|++|++++|.-.....                .+....+..+++|+.|++
T Consensus       145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~L  208 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG----------------LISALCPLKFPTLQVLAL  208 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH----------------HHHHSCTTSCTTCCEEEC
T ss_pred             HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH----------------HHHHHHhccCCCCCEEEC
Confidence             11388999999888643221  34445556666555542111000                000112366778888888


Q ss_pred             eccCCCh--HHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEeccCcccccccccC-CceeeEEEcCcc
Q 009416          260 DFLPIED--EWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDL  330 (535)
Q Consensus       260 ~~~~~~~--~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l~~~~-p~L~~L~~~g~~  330 (535)
                      ++|.+..  .....++.++++|+.|+++++...+..+.    ..++|+.|+++++. +..+.... ++|+.|+++++.
T Consensus       209 ~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~  285 (312)
T 1wwl_A          209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNR  285 (312)
T ss_dssp             TTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSC
T ss_pred             CCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCC
Confidence            8887773  33445556778888888887654332221    23567777776653 22322111 345555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.25  E-value=5.4e-13  Score=130.61  Aligned_cols=170  Identities=19%  Similarity=0.101  Sum_probs=113.4

Q ss_pred             CCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHH-------HhCCCcccEEEEeecCCCcee--ee--CC
Q 009416          138 VESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL-------ISGCPLIEYLEIRSCEGLESL--DL--VN  206 (535)
Q Consensus       138 ~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~-------~~~~p~Le~L~L~~c~~l~~~--~~--~~  206 (535)
                      .++|++|++++|.+..|..+.  ..|+.|+++++.+....++..       ...+++|++|++++|...+.+  .+  ..
T Consensus        42 ~~~L~~l~l~~n~l~~p~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           42 GRSLEYLLKRVDTEADLGQFT--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EEECTTHHHHCCTTCCCHHHH--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCCceeEeecccccccHHHHH--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            466778888888773332222  238889998887732111111       226899999999999765433  22  67


Q ss_pred             CCCccEEEEeecC--CccEEeecC-----CcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChH--HHHHh-cCC
Q 009416          207 LSNLKEIILVNTS--DIKRVEIKT-----SNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDE--WLCNG-ISK  275 (535)
Q Consensus       207 l~~L~~L~l~~c~--~l~~~~~~~-----~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~--~l~~l-~~~  275 (535)
                      +++|++|++++|.  ........+     ++|++|+++++. ....+..++.+++|+.|++++|.+.+.  .+..+ +..
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            8999999999982  221111123     899999999988 333335688899999999999998765  23332 278


Q ss_pred             CCCccEEEeecCCCCc--cccc----CCCCCceEEeccCc
Q 009416          276 LPLLEYLSMTKCHKLT--SVRI----SSPCLKTLILECCD  309 (535)
Q Consensus       276 ~~~L~~L~L~~c~~l~--~l~~----~~~~L~~L~l~~c~  309 (535)
                      +++|+.|+++++.-..  .++.    ..++|+.|+++++.
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence            9999999999875321  2211    34677777777653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.25  E-value=1.4e-11  Score=115.52  Aligned_cols=184  Identities=16%  Similarity=0.099  Sum_probs=92.0

Q ss_pred             ceeEEEEeCccccCC--CCcccCcccceeEeeeEe-eChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEE
Q 009416          140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEI  213 (535)
Q Consensus       140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L  213 (535)
                      +|++|++++|.+...  ..+..+++|++|++++|. ++.-. ...+..+++|++|++++|..+..+   .+.++++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            566666666655322  234556666666666664 32110 112445666666666663334333   23345666666


Q ss_pred             EEeec--CCccEEeecCCccc---EEEEeee-cccCeE-EecCcccccc-eeEeeccCCChHHHHHhcCCCCCccEEEee
Q 009416          214 ILVNT--SDIKRVEIKTSNVN---ALAIHQT-YLFPIE-VNVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLEYLSMT  285 (535)
Q Consensus       214 ~l~~c--~~l~~~~~~~~~L~---~L~l~~~-~~~~~~-~~~~~l~~L~-~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~  285 (535)
                      ++++|  ..+.. ...+++|+   .|+++++ ....++ ..+.++++|+ .|+++++.+.. .....+.. ++|+.|++.
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCC-CCCCEEEcC
Confidence            66665  22221 11344554   6666666 322122 2356666777 77777666652 22222333 667777777


Q ss_pred             cCCCCccccc----CC-CCCceEEeccCcccccccc-cCCceeeEEEcC
Q 009416          286 KCHKLTSVRI----SS-PCLKTLILECCDKLIQVEI-ETPNLSIFKYHG  328 (535)
Q Consensus       286 ~c~~l~~l~~----~~-~~L~~L~l~~c~~L~~l~~-~~p~L~~L~~~g  328 (535)
                      ++..++.++.    .. ++|+.|++++.. +..+.. ..++|+.|.+.+
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~  235 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARN  235 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTT
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccC
Confidence            6654544432    23 466666666532 333321 234555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.25  E-value=1.4e-11  Score=115.57  Aligned_cols=191  Identities=12%  Similarity=0.100  Sum_probs=107.9

Q ss_pred             cCceEEEEeccCCCCccCCc-cccCCCceeEEEEeCcc-cc-CC-CCcccCcccceeEeee-EeeChhHHHHHHhCCCcc
Q 009416          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCK-LQ-QP-SENVKLFSLRKLALRE-VCADDQAIASLISGCPLI  188 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-~~-~~-~~~~~l~~L~~L~L~~-~~~~~~~l~~~~~~~p~L  188 (535)
                      .+++.|++..+...  .+|. .+..+++|++|++++|. +. .+ ..+..+++|++|++++ +.++.-. ...+..+++|
T Consensus        31 ~~l~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCCCS--EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred             CcccEEEEeCCcce--EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence            36777777665432  4444 45566777777777775 52 22 3456677777777776 5543211 1224567777


Q ss_pred             cEEEEeecCCCceeeeCCCCCcc---EEEEeecCCccEEee----cCCccc-EEEEeeecccCeEEecCcccccceeEee
Q 009416          189 EYLEIRSCEGLESLDLVNLSNLK---EIILVNTSDIKRVEI----KTSNVN-ALAIHQTYLFPIEVNVSSCGNLKCLKFD  260 (535)
Q Consensus       189 e~L~L~~c~~l~~~~~~~l~~L~---~L~l~~c~~l~~~~~----~~~~L~-~L~l~~~~~~~~~~~~~~l~~L~~L~L~  260 (535)
                      ++|++++|...+--.+..+++|+   .|++++|..+..+..    .+++|+ .|+++++....++......++|+.|+++
T Consensus       108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred             CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence            77777777533211244455565   777777655555542    456777 7777766522222222223677777777


Q ss_pred             ccC-CChHHHHHhcCCC-CCccEEEeecCCCCccccc-CCCCCceEEeccCc
Q 009416          261 FLP-IEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCD  309 (535)
Q Consensus       261 ~~~-~~~~~l~~l~~~~-~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~  309 (535)
                      ++. +... ....+.++ ++|+.|+++++. ++.++. .+++|+.|.+.++.
T Consensus       188 ~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          188 KNKYLTVI-DKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTW  237 (239)
T ss_dssp             TCTTCCEE-CTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC-
T ss_pred             CCCCcccC-CHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCcc
Confidence            773 5432 22235556 777777777643 334443 35667777766654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.21  E-value=1.2e-11  Score=112.45  Aligned_cols=147  Identities=19%  Similarity=0.224  Sum_probs=88.6

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      .++++.|++..+...  .+| .+..+++|++|++++|.+...+.+..+++|++|++++|.++..... .++.+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCEEE
Confidence            357778887765433  455 4667788888888888665556667778888888887776543222 256677788887


Q ss_pred             EeecCCCce--eeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416          193 IRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (535)
Q Consensus       193 L~~c~~l~~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~  270 (535)
                      +++|.....  -.+..+++|++|++++|..+..+                    + .+..+++|+.|++++|.+.+..  
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--------------------~-~l~~l~~L~~L~l~~n~i~~~~--  175 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--------------------M-PLKTLPELKSLNIQFDGVHDYR--  175 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--------------------G-GGGGCSSCCEEECTTBCCCCCT--
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--------------------H-hhcCCCCCCEEECCCCCCcChH--
Confidence            777755431  13455666666666665322222                    1 3445555666666655554421  


Q ss_pred             HhcCCCCCccEEEeecC
Q 009416          271 NGISKLPLLEYLSMTKC  287 (535)
Q Consensus       271 ~l~~~~~~L~~L~L~~c  287 (535)
                       .+..+++|+.|++.+.
T Consensus       176 -~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          176 -GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             -TGGGCSSCCEEEECBC
T ss_pred             -HhccCCCCCEEEeeCc
Confidence             2445566666666653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.21  E-value=1.9e-11  Score=116.95  Aligned_cols=97  Identities=21%  Similarity=0.127  Sum_probs=57.0

Q ss_pred             ceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          116 VKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       116 l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .+.+++....  ...+|..+.  ++|++|+|++|.+...  ..+..+++|++|+++++.++.- ....+..+++|++|++
T Consensus        18 ~~~l~~~~~~--l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           18 KNSVDCSSKK--LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTEEECTTSC--CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEEC
T ss_pred             CCEEEccCCC--CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEEC
Confidence            4445444332  334665443  6788888888877433  3567788888888887766321 1223456778888888


Q ss_pred             eecCCCcee---eeCCCCCccEEEEeec
Q 009416          194 RSCEGLESL---DLVNLSNLKEIILVNT  218 (535)
Q Consensus       194 ~~c~~l~~~---~~~~l~~L~~L~l~~c  218 (535)
                      ++|... .+   .+..+++|++|+++++
T Consensus        93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n  119 (270)
T 2o6q_A           93 TDNKLQ-ALPIGVFDQLVNLAELRLDRN  119 (270)
T ss_dssp             CSSCCC-CCCTTTTTTCSSCCEEECCSS
T ss_pred             CCCcCC-cCCHhHcccccCCCEEECCCC
Confidence            777532 22   2334556666665554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.19  E-value=1.8e-11  Score=117.41  Aligned_cols=201  Identities=18%  Similarity=0.177  Sum_probs=114.4

Q ss_pred             CccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--e
Q 009416          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D  203 (535)
Q Consensus       128 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~  203 (535)
                      ...+|..+.  ++|++|++++|.+...  ..+.++++|++|++++|.++... ...+..+++|++|++++|......  .
T Consensus        19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhh
Confidence            345665442  5788888888877422  35677888888888888763211 123567788888888887643221  3


Q ss_pred             eCCCCCccEEEEeec--CCccEEee-cCCcccEEEEeeec-cc-CeEEecCcccccceeEeeccCCChHH---HHHhcCC
Q 009416          204 LVNLSNLKEIILVNT--SDIKRVEI-KTSNVNALAIHQTY-LF-PIEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISK  275 (535)
Q Consensus       204 ~~~l~~L~~L~l~~c--~~l~~~~~-~~~~L~~L~l~~~~-~~-~~~~~~~~l~~L~~L~L~~~~~~~~~---l~~l~~~  275 (535)
                      +..+++|++|++.+|  ..+....+ .+++|+.|+++++. .. .++..+.++++|+.|++++|.+.+..   +.. +..
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~  174 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ  174 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHT
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhh
Confidence            556677888887776  22222222 56777777777766 22 23456677778888888777765522   111 222


Q ss_pred             CCCcc-EEEeecCCCCccccc---CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEec
Q 009416          276 LPLLE-YLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS  349 (535)
Q Consensus       276 ~~~L~-~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~  349 (535)
                      ++.|. .|+++++.. +.++.   ...+|+.|+++++. +..+..               ..+.++++|+.++++.++
T Consensus       175 L~~l~l~L~ls~n~l-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~---------------~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          175 MPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQ-LKSVPD---------------GIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CTTCCEEEECCSSCC-CEECTTSSCSCCEEEEECCSSC-CSCCCT---------------TTTTTCCSCCEEECCSSC
T ss_pred             ccccceeeecCCCcc-cccCccccCCCcccEEECCCCc-eeecCH---------------hHhcccccccEEEccCCc
Confidence            33333 666666432 22221   11244455544432 111110               235667888888886553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.19  E-value=8.5e-12  Score=119.51  Aligned_cols=169  Identities=15%  Similarity=0.096  Sum_probs=104.6

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      .++++.|.+..+...  .++ .+..+++|++|++++|.+...+.+..+++|++|++++|.++.. ....+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~--~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIK--SVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCC--CCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCcc--ccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence            457888887765432  333 4667888888888888876656677888888888888877421 122356788888888


Q ss_pred             EeecCCCcee--eeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416          193 IRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       193 L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~  265 (535)
                      +++|......  .+..+++|++|++++| .+..+.    ..+++|+.|+++++. ....+..+..+++|+.|++++|.+.
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            8887643222  2456677888887777 222222    145666666666665 2211222455666666666666655


Q ss_pred             hHHHHHhcCCCCCccEEEeecC
Q 009416          266 DEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       266 ~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      +... ..+..+++|+.|++.++
T Consensus       195 ~~~~-~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          195 SVPD-GVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CCCT-TTTTTCTTCCEEECCSS
T ss_pred             ccCH-HHHhCCcCCCEEEccCC
Confidence            4222 22455666666666664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.18  E-value=1.1e-11  Score=121.24  Aligned_cols=200  Identities=16%  Similarity=0.124  Sum_probs=87.3

Q ss_pred             HHHHHHHHHhcCceEEEEeccCCCCccCCccc--cCCCceeEEEEeCccccCC------CCcccCcccceeEeeeEeeCh
Q 009416          104 AGRCLGLAIESEVKELVLVHWRSERRNLPEII--FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADD  175 (535)
Q Consensus       104 ~~~wl~~~~~~~l~~L~L~~~~~~~~~lp~~l--~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~  175 (535)
                      +..........++++|++..+.... ..|..+  ..+++|++|+|++|.+...      ..+..+++|++|++++|.+..
T Consensus        81 ~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  159 (310)
T 4glp_A           81 LVGALRVLAYSRLKELTLEDLKITG-TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA  159 (310)
T ss_dssp             HHHHHHHHHHSCCCEEEEESCCCBS-CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC
T ss_pred             HHHHHHhcccCceeEEEeeCCEecc-chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch
Confidence            3333333334456666665543221 233333  4455566666665555321      111235555555555555421


Q ss_pred             hHHHHHHhCCCcccEEEEeecCCCce------eeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEE---
Q 009416          176 QAIASLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV---  246 (535)
Q Consensus       176 ~~l~~~~~~~p~Le~L~L~~c~~l~~------~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~---  246 (535)
                      . ....++.+++|++|++++|...+.      ..+..+++|++|++++|                     ....++.   
T Consensus       160 ~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N---------------------~l~~l~~~~~  217 (310)
T 4glp_A          160 F-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT---------------------GMETPTGVCA  217 (310)
T ss_dssp             C-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS---------------------CCCCHHHHHH
T ss_pred             h-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC---------------------CCCchHHHHH
Confidence            1 111234455555555555543221      11223444555555444                     3111111   


Q ss_pred             -ecCcccccceeEeeccCCChHHHHHhcCCC---CCccEEEeecCCCCccccc-CCCCCceEEeccCcccccc--cccCC
Q 009416          247 -NVSSCGNLKCLKFDFLPIEDEWLCNGISKL---PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV--EIETP  319 (535)
Q Consensus       247 -~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~---~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l--~~~~p  319 (535)
                       .++.+++|++|+|++|.+.+..+.. +..+   ++|++|+++++.- +.++. .+++|+.|+++++. +..+  ....+
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~L~~L~Ls~N~-l~~~~~~~~l~  294 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGL-EQVPKGLPAKLRVLDLSSNR-LNRAPQPDELP  294 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCC-CSCCSCCCSCCSCEECCSCC-CCSCCCTTSCC
T ss_pred             HHHhcCCCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCC-CchhhhhcCCCCEEECCCCc-CCCCchhhhCC
Confidence             1234455666666655554432222 1222   4666666655432 23333 22456666665542 2221  12334


Q ss_pred             ceeeEEEcCc
Q 009416          320 NLSIFKYHGD  329 (535)
Q Consensus       320 ~L~~L~~~g~  329 (535)
                      +|+.|.++++
T Consensus       295 ~L~~L~L~~N  304 (310)
T 4glp_A          295 EVDNLTLDGN  304 (310)
T ss_dssp             CCSCEECSST
T ss_pred             CccEEECcCC
Confidence            5555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.17  E-value=2.7e-11  Score=116.00  Aligned_cols=148  Identities=18%  Similarity=0.141  Sum_probs=88.8

Q ss_pred             ccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccE
Q 009416          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKE  212 (535)
Q Consensus       135 l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~  212 (535)
                      ...+++|+.|+++++.+...+.+..+++|++|++++|.+..-  . .+..+++|++|++++|...+..  .+..+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            345689999999999987767788999999999999988542  2 3678999999999998643222  2456677888


Q ss_pred             EEEeecCCccEEe---e-cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416          213 IILVNTSDIKRVE---I-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       213 L~l~~c~~l~~~~---~-~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      |++++|. +..+.   + .+++|++|+++++. ....+..+..+++|+.|++++|.+++.. ...+..+++|+.|+++++
T Consensus       114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             EECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCC
Confidence            8777762 11111   1 34455555555544 1111112344445555555544444211 111334444444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.17  E-value=3.2e-11  Score=116.69  Aligned_cols=100  Identities=20%  Similarity=0.182  Sum_probs=62.1

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      .++++.|++..+...  .++ .+..+++|++|++++|.+...+.+..+++|++|++++|.++.  ++. +..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~--~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcc--cCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEE
Confidence            356777777665432  333 356677888888888777544446777788888887777643  222 56777777777


Q ss_pred             EeecCCCceeeeCCCCCccEEEEeec
Q 009416          193 IRSCEGLESLDLVNLSNLKEIILVNT  218 (535)
Q Consensus       193 L~~c~~l~~~~~~~l~~L~~L~l~~c  218 (535)
                      +++|....--.+..+++|+.|++++|
T Consensus       119 L~~n~i~~~~~l~~l~~L~~L~l~~n  144 (291)
T 1h6t_A          119 LEHNGISDINGLVHLPQLESLYLGNN  144 (291)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCCCcCCCChhhcCCCCCCEEEccCC
Confidence            77775322113444556666666555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.17  E-value=1.6e-12  Score=131.29  Aligned_cols=99  Identities=7%  Similarity=-0.060  Sum_probs=57.2

Q ss_pred             hcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccc---cccccccccCC--CCcccceeeEE
Q 009416          333 FSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENV---IVPQELRQIQS--PPLTSVKKLNY  407 (535)
Q Consensus       333 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~---~~p~~~~~~~~--~~l~~L~~L~l  407 (535)
                      .+.++++|+.|+++.+.........++..+.   .+++|+ .|.|+.+.+...   .++.     .+  ..+++|++|+|
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~---~~~~L~-~L~L~~n~i~~~~~~~l~~-----~l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALK---SWPNLR-ELGLNDCLLSARGAAAVVD-----AFSKLENIGLQTLRL  281 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGG---GCTTCC-EEECTTCCCCHHHHHHHHH-----HHHTCSSCCCCEEEC
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHc---cCCCcC-EEECCCCCCchhhHHHHHH-----HHhhccCCCeEEEEC
Confidence            4456777777777655322101234566666   788888 777775555421   1333     22  33678888888


Q ss_pred             EEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeecC
Q 009416          408 SVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHGH  453 (535)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~~  453 (535)
                      +.+.           ..+  .++..++..+...+|+|+.|.+..++
T Consensus       282 ~~n~-----------i~~--~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          282 QYNE-----------IEL--DAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CSSC-----------CBH--HHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cCCc-----------CCH--HHHHHHHHHHHhcCCCceEEEccCCc
Confidence            6322           111  13344555555667889988887543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.15  E-value=7.1e-12  Score=126.55  Aligned_cols=71  Identities=17%  Similarity=-0.012  Sum_probs=36.3

Q ss_pred             cccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccc---cccccccccCC-CCcccceeeEEEE
Q 009416          334 SSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENV---IVPQELRQIQS-PPLTSVKKLNYSV  409 (535)
Q Consensus       334 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~---~~p~~~~~~~~-~~l~~L~~L~l~~  409 (535)
                      +.++++|+.|+++.+.........++..+.. +.+++|+ .|.++.+.+...   .+|.     .+ ..+++|++|+++.
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~~~L~-~L~L~~n~i~~~g~~~l~~-----~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSK-LENIGLQ-TLRLQYNEIELDAVRTLKT-----VIDEKMPDLLFLELNG  312 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHT-CSSCCCC-EEECCSSCCBHHHHHHHHH-----HHHHHCTTCCEEECTT
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHHHhh-ccCCCeE-EEECcCCcCCHHHHHHHHH-----HHHhcCCCceEEEccC
Confidence            4456666666665443222112234444430 0267777 777776555511   2454     22 2456788887764


Q ss_pred             ee
Q 009416          410 RT  411 (535)
Q Consensus       410 ~~  411 (535)
                      ++
T Consensus       313 N~  314 (386)
T 2ca6_A          313 NR  314 (386)
T ss_dssp             SB
T ss_pred             Cc
Confidence            43

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.14  E-value=3.5e-11  Score=115.10  Aligned_cols=168  Identities=17%  Similarity=0.142  Sum_probs=104.7

Q ss_pred             cCceEEEEeccCCCCccCCc-cccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      ++++.|++..+...  .+|. .+..+++|++|+|++|.+...  ..+..+++|++|++++|.+..-. ...+..+++|++
T Consensus        37 ~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSCCS--CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred             CCCCEEECcCCCCC--eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence            47888988876533  4554 577889999999999988433  33478999999999999874321 234678999999


Q ss_pred             EEEeecCCCcee--eeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeecccCeE-EecCcccccceeEeeccC
Q 009416          191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLP  263 (535)
Q Consensus       191 L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~~~  263 (535)
                      |++++|......  .+..+++|++|++++|. +..+.    ..+++|+.|+++++....++ ..+..+++|+.|++++|.
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence            999998643221  34567888888887771 22221    13456666666655411111 224455556666665555


Q ss_pred             CChHHHHHhcCCCCCccEEEeec
Q 009416          264 IEDEWLCNGISKLPLLEYLSMTK  286 (535)
Q Consensus       264 ~~~~~l~~l~~~~~~L~~L~L~~  286 (535)
                      +... ....+..+++|+.|++.+
T Consensus       193 l~~~-~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          193 LKRV-PEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CSCC-CTTTTTTCTTCCEEECCS
T ss_pred             CCcC-CHHHhccccCCCEEEecC
Confidence            4432 112234455555555555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.13  E-value=3.8e-11  Score=117.31  Aligned_cols=217  Identities=14%  Similarity=0.087  Sum_probs=138.2

Q ss_pred             CceEEEEeccCCCCccCCcc--ccCCCceeEEEEeCccccC--CCCc--ccCcccceeEeeeEeeChhH--HH-HHHhCC
Q 009416          115 EVKELVLVHWRSERRNLPEI--IFYVESLHVLELSYCKLQQ--PSEN--VKLFSLRKLALREVCADDQA--IA-SLISGC  185 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~--l~~~~~L~~L~L~~~~~~~--~~~~--~~l~~L~~L~L~~~~~~~~~--l~-~~~~~~  185 (535)
                      .++.+.+.........+...  ...+++|++|++++|.+..  +..+  ..+++|++|++++|.++...  +. ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            46667666543322222211  1234679999999998743  2344  78999999999999885311  11 224478


Q ss_pred             CcccEEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccC
Q 009416          186 PLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP  263 (535)
Q Consensus       186 p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~  263 (535)
                      ++|++|++++|......  .+..+++|++|++++|.-.....                .+....+..+++|++|++++|.
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG----------------LMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH----------------HHTTSCTTSSCCCCSCBCCSSC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh----------------hhHHHhhhcCCCCCEEECCCCC
Confidence            99999999988653222  33445556666555542110000                0011234678999999999999


Q ss_pred             CCh--HHHHHhcCCCCCccEEEeecCCCCccccc---CC---CCCceEEeccCcccccccc-cCCceeeEEEcCcch---
Q 009416          264 IED--EWLCNGISKLPLLEYLSMTKCHKLTSVRI---SS---PCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLI---  331 (535)
Q Consensus       264 ~~~--~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~---~~L~~L~l~~c~~L~~l~~-~~p~L~~L~~~g~~~---  331 (535)
                      ++.  .....++.++++|++|+++++......+.   .+   ++|++|+++++. +..+.. ..++|+.|+++++..   
T Consensus       209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSC
T ss_pred             CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCC
Confidence            873  33334457789999999999764443332   22   699999998764 334432 237999999998876   


Q ss_pred             hhcccCcccceeEEEEe
Q 009416          332 SFSSNALSLSETSLCFS  348 (535)
Q Consensus       332 ~~~~~l~~L~~L~l~~~  348 (535)
                      ..+..+++|+.|+++.+
T Consensus       288 ~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          288 PQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             CCTTSCCCCSCEECSST
T ss_pred             chhhhCCCccEEECcCC
Confidence            24577899999988644

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.12  E-value=5.3e-11  Score=126.53  Aligned_cols=165  Identities=18%  Similarity=0.169  Sum_probs=123.5

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      ..+|+.|.+..+...  .+| .+..+++|+.|+|++|.+...+.+..+++|+.|+|++|.+..-  + .+..+++|+.|+
T Consensus        42 L~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCC--CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCC--CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEE
Confidence            468888888776533  444 4778899999999999886555588999999999999988432  2 367899999999


Q ss_pred             EeecCCCceeeeCCCCCccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (535)
Q Consensus       193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~  270 (535)
                      |++|....--.+..+++|+.|++++|. +..+.  ..+++|+.|++++|....... +..+++|+.|+|++|.+.+.  .
T Consensus       116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~  191 (605)
T 1m9s_A          116 LEHNGISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--R  191 (605)
T ss_dssp             CTTSCCCCCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--G
T ss_pred             ecCCCCCCCccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--h
Confidence            999875432256678899999999882 22222  267889999998887222222 78889999999998888763  2


Q ss_pred             HhcCCCCCccEEEeecCC
Q 009416          271 NGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       271 ~l~~~~~~L~~L~L~~c~  288 (535)
                      . +..+++|+.|+|.++.
T Consensus       192 ~-l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          192 A-LAGLKNLDVLELFSQE  208 (605)
T ss_dssp             G-GTTCTTCSEEECCSEE
T ss_pred             H-HccCCCCCEEEccCCc
Confidence            3 6778899999998854

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.12  E-value=1.3e-10  Score=124.94  Aligned_cols=255  Identities=14%  Similarity=0.095  Sum_probs=151.2

Q ss_pred             CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeec
Q 009416          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (535)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c  218 (535)
                      .+++.+.+.++.+..........+|+.|++.++.+....    ...++.|+.+.+..+..........+++|+.|+++.+
T Consensus       306 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n  381 (635)
T 4g8a_A          306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN  381 (635)
T ss_dssp             TTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC----CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccchhhhhhhcccccccCcC----cccchhhhhcccccccCCCCcccccccccccchhhcc
Confidence            344444444443322223334445555555555442110    1234555555555554433333344567777777665


Q ss_pred             CCccEEe-----ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccc
Q 009416          219 SDIKRVE-----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV  293 (535)
Q Consensus       219 ~~l~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l  293 (535)
                      .......     ...++|+.+++..+........+..+++|+.+++..+..........+..+++++.++++.+......
T Consensus       382 ~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~  461 (635)
T 4g8a_A          382 GLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  461 (635)
T ss_dssp             CCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred             ccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence            2211111     14566777776665533334456677888888887655444333344667788888888875433222


Q ss_pred             cc---CCCCCceEEeccCcccccc----cccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhHhHHHH
Q 009416          294 RI---SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEY  361 (535)
Q Consensus       294 ~~---~~~~L~~L~l~~c~~L~~l----~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  361 (535)
                      +.   ..++|+.|+++++.....+    ....++|+.|+++++..     ..+.++++|+.|+|+.+....    ..+..
T Consensus       462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~----l~~~~  537 (635)
T 4g8a_A          462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS----LDTFP  537 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB----CCCGG
T ss_pred             ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC----CChhH
Confidence            22   3468899999887654322    23557899999998865     457889999999997653333    22344


Q ss_pred             HhhhhcccccceeEEEEeeccccccccccccccCCCCc-ccceeeEEEEee
Q 009416          362 FEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPL-TSVKKLNYSVRT  411 (535)
Q Consensus       362 l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l-~~L~~L~l~~~~  411 (535)
                      ++   ++++|+ .|.++.|.+. ...|.     .+..+ ++|++|+|+..|
T Consensus       538 ~~---~l~~L~-~L~Ls~N~l~-~~~~~-----~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          538 YK---CLNSLQ-VLDYSLNHIM-TSKKQ-----ELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             GT---TCTTCC-EEECTTSCCC-BCCSS-----CTTCCCTTCCEEECTTCC
T ss_pred             Hh---CCCCCC-EEECCCCcCC-CCCHH-----HHHhhhCcCCEEEeeCCC
Confidence            56   799999 9998888877 44444     45455 589999997555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.10  E-value=9.4e-11  Score=113.34  Aligned_cols=165  Identities=18%  Similarity=0.183  Sum_probs=121.1

Q ss_pred             cCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEE
Q 009416          136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL  215 (535)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l  215 (535)
                      ..+++|++|++++|.+...+.+..+++|++|++++|.+++..  . +..+++|++|++++|....--.+..+++|++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL  119 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence            346888999999998865567888999999999998874322  2 6788999999999886433225677889999999


Q ss_pred             eecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccc
Q 009416          216 VNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV  293 (535)
Q Consensus       216 ~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l  293 (535)
                      ++|. +..+.  ..+++|+.|+++++....+ ..+..+++|+.|++++|.+.+...   +..+++|+.|+++++. ++.+
T Consensus       120 ~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~-i~~l  193 (291)
T 1h6t_A          120 EHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH-ISDL  193 (291)
T ss_dssp             TTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCBC
T ss_pred             CCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCc-CCCC
Confidence            8882 22222  2678899999988873222 467788899999999888876432   6788999999998863 3333


Q ss_pred             cc--CCCCCceEEeccCc
Q 009416          294 RI--SSPCLKTLILECCD  309 (535)
Q Consensus       294 ~~--~~~~L~~L~l~~c~  309 (535)
                      +.  ..++|+.|++++++
T Consensus       194 ~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          194 RALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GGGTTCTTCSEEEEEEEE
T ss_pred             hhhccCCCCCEEECcCCc
Confidence            32  45688888887653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.09  E-value=2e-10  Score=110.96  Aligned_cols=169  Identities=15%  Similarity=0.028  Sum_probs=94.3

Q ss_pred             ccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEE
Q 009416          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (535)
Q Consensus       135 l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~  214 (535)
                      +..++++++++++++.+...+. .-.++++.|++++|.++... ...+..+++|++|++++|....-.....+++|++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~   83 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD   83 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred             ccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence            4456677777777776643221 12367777777777663221 123566777777777776533222234566777777


Q ss_pred             Eeec--CCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCc
Q 009416          215 LVNT--SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT  291 (535)
Q Consensus       215 l~~c--~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~  291 (535)
                      ++++  ..+......+++|+.|+++++. ....+..+.++++|+.|++++|.+... ....+..+++|+.|+++++. ++
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~  161 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-LT  161 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CS
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc-CC
Confidence            7666  2222211245677777777666 222223466777777777777766542 22335566777777777653 23


Q ss_pred             cccc----CCCCCceEEecc
Q 009416          292 SVRI----SSPCLKTLILEC  307 (535)
Q Consensus       292 ~l~~----~~~~L~~L~l~~  307 (535)
                      .++.    ..++|+.|++++
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~  181 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQE  181 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCS
T ss_pred             ccCHHHhcCcCCCCEEECCC
Confidence            3332    224555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.08  E-value=1e-10  Score=106.16  Aligned_cols=145  Identities=17%  Similarity=0.167  Sum_probs=100.1

Q ss_pred             cCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCc--eeeeCCCCCccEE
Q 009416          136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEI  213 (535)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~--~~~~~~l~~L~~L  213 (535)
                      ..+++|++|++++|.+...+.+..+++|++|++++|.+..-  . .+..+++|++|++++|....  .-.+..+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            45688999999999886545778899999999998866332  2 36778889999988876532  1134444555555


Q ss_pred             EEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccC-CChHHHHHhcCCCCCccEEEeecCCCCc
Q 009416          214 ILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLT  291 (535)
Q Consensus       214 ~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~L~~c~~l~  291 (535)
                      ++                     +++. ....+..+..+++|+.|++++|. +....   .+..+++|+.|++++|.- +
T Consensus       118 ~L---------------------s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i-~  172 (197)
T 4ezg_A          118 DI---------------------SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGV-H  172 (197)
T ss_dssp             EC---------------------CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCC-C
T ss_pred             Ee---------------------cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCC-c
Confidence            44                     4444 22224457788999999999887 55532   367899999999999753 3


Q ss_pred             cccc--CCCCCceEEeccC
Q 009416          292 SVRI--SSPCLKTLILECC  308 (535)
Q Consensus       292 ~l~~--~~~~L~~L~l~~c  308 (535)
                      .++.  ..++|+.|++.+.
T Consensus       173 ~~~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          173 DYRGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CCTTGGGCSSCCEEEECBC
T ss_pred             ChHHhccCCCCCEEEeeCc
Confidence            3322  4567888888653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.08  E-value=6.5e-11  Score=113.54  Aligned_cols=187  Identities=19%  Similarity=0.158  Sum_probs=128.5

Q ss_pred             cCceEEEEeccCCCCccCCc-cccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      ++++.|++..+...  .++. .+..+++|++|++++|.+...  ..+..+++|++|++++|.++... ...+..+++|++
T Consensus        28 ~~l~~L~ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCC--EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCE
T ss_pred             CCccEEECCCCccc--ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccE
Confidence            47899988776533  4444 677789999999999987432  45788999999999999874322 123678999999


Q ss_pred             EEEeecCCCc--eeeeCCCCCccEEEEeecC--C--ccEEeecCCcccEEEEeeec-ccCeEEecCcccccc----eeEe
Q 009416          191 LEIRSCEGLE--SLDLVNLSNLKEIILVNTS--D--IKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLK----CLKF  259 (535)
Q Consensus       191 L~L~~c~~l~--~~~~~~l~~L~~L~l~~c~--~--l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~----~L~L  259 (535)
                      |++.+|....  ...+..+++|++|++++|.  .  +......+++|+.|+++++. .......+..+++|+    .|++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            9999986532  2357778999999999883  2  11222367899999999987 222223456666676    7888


Q ss_pred             eccCCChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEEec
Q 009416          260 DFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILE  306 (535)
Q Consensus       260 ~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~l~  306 (535)
                      +++.+......  .....+|+.|+++++. ++.++.    ..++|+.|+++
T Consensus       185 s~n~l~~~~~~--~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          185 SLNPMNFIQPG--AFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             CSSCCCEECTT--SSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECC
T ss_pred             CCCcccccCcc--ccCCCcccEEECCCCc-eeecCHhHhcccccccEEEcc
Confidence            88887753222  2234589999999865 334432    23455555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.05  E-value=1.2e-10  Score=112.59  Aligned_cols=166  Identities=14%  Similarity=0.058  Sum_probs=116.8

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      ++++++++....  ...+|..+.  ++++.|+|++|.+...  ..+..+++|++|++++|.++.-..   .+.+++|++|
T Consensus        10 ~~l~~l~~~~~~--l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L   82 (290)
T 1p9a_G           10 ASHLEVNCDKRN--LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTL   82 (290)
T ss_dssp             TTCCEEECTTSC--CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEE
T ss_pred             CCccEEECCCCC--CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEE
Confidence            356666665543  346776553  6889999999887432  457788999999999887743211   2578899999


Q ss_pred             EEeecCCCcee--eeCCCCCccEEEEeec--CCccEEe-ecCCcccEEEEeeecccCe-EEecCcccccceeEeeccCCC
Q 009416          192 EIRSCEGLESL--DLVNLSNLKEIILVNT--SDIKRVE-IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       192 ~L~~c~~l~~~--~~~~l~~L~~L~l~~c--~~l~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~  265 (535)
                      ++++|... .+  .+..+++|++|+++++  ..+..-. ..+++|+.|+++++....+ ...+..+++|+.|++++|.++
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            99988643 33  3456789999999888  2222111 2678999999998872222 234678899999999999887


Q ss_pred             hHHHHHhcCCCCCccEEEeecCC
Q 009416          266 DEWLCNGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       266 ~~~l~~l~~~~~~L~~L~L~~c~  288 (535)
                      .. ....+..+++|+.|+++++.
T Consensus       162 ~l-~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          162 EL-PAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             CC-CTTTTTTCTTCCEEECCSSC
T ss_pred             cc-CHHHhcCcCCCCEEECCCCc
Confidence            42 33446788999999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.05  E-value=1.1e-10  Score=124.21  Aligned_cols=164  Identities=18%  Similarity=0.188  Sum_probs=86.3

Q ss_pred             CCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEe
Q 009416          137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV  216 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~  216 (535)
                      .+++|+.|++++|.+...+.+..+++|+.|+|++|.+....  . +..+++|+.|+|++|....--.+..+++|+.|+++
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE  117 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEec
Confidence            34556666666666544445566666666666666553211  1 45566666666666643221144455666666666


Q ss_pred             ecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCcccc
Q 009416          217 NTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR  294 (535)
Q Consensus       217 ~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~  294 (535)
                      +|. +..+.  ..+++|+.|++++|....+ ..+..+++|+.|+|++|.+.+...   +..+++|+.|+|++|. +..++
T Consensus       118 ~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-i~~l~  191 (605)
T 1m9s_A          118 HNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH-ISDLR  191 (605)
T ss_dssp             TSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCBCG
T ss_pred             CCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCC-CCCCh
Confidence            651 11111  1456666666666652222 345556666666666666554322   4556666666666643 22222


Q ss_pred             c--CCCCCceEEeccCc
Q 009416          295 I--SSPCLKTLILECCD  309 (535)
Q Consensus       295 ~--~~~~L~~L~l~~c~  309 (535)
                      .  .+++|+.|++++++
T Consensus       192 ~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          192 ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             GGTTCTTCSEEECCSEE
T ss_pred             HHccCCCCCEEEccCCc
Confidence            2  33556666665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.05  E-value=1.2e-10  Score=110.12  Aligned_cols=165  Identities=15%  Similarity=0.109  Sum_probs=91.9

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      +.+++++...  ....+|..+.  ++++.|+|++|.+...  ..+..+++|++|+|++|.+.... ...+..+++|++|+
T Consensus        15 ~~~~l~~~~~--~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~   89 (251)
T 3m19_A           15 GKKEVDCQGK--SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLG   89 (251)
T ss_dssp             GGTEEECTTC--CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEE
T ss_pred             CCeEEecCCC--CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEE
Confidence            3455555433  3346676554  6888889988887433  45678888899998888774321 22356788888888


Q ss_pred             EeecCCCcee--eeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeecccCeEE-ecCcccccceeEeeccCCC
Q 009416          193 IRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       193 L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~  265 (535)
                      +++|......  .+..+++|++|++++| .+..+.    ..+++|+.|+++++....++. .+..+++|+.|+|++|.+.
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            8887643211  2345667777777666 222221    134555555555554111111 3445555555555555544


Q ss_pred             hHHHHHhcCCCCCccEEEeec
Q 009416          266 DEWLCNGISKLPLLEYLSMTK  286 (535)
Q Consensus       266 ~~~l~~l~~~~~~L~~L~L~~  286 (535)
                      .... ..+..+++|+.|++.+
T Consensus       169 ~~~~-~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          169 SVPH-GAFDRLGKLQTITLFG  188 (251)
T ss_dssp             CCCT-TTTTTCTTCCEEECCS
T ss_pred             ccCH-HHHhCCCCCCEEEeeC
Confidence            3211 1234445555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.04  E-value=5e-10  Score=111.27  Aligned_cols=211  Identities=17%  Similarity=0.171  Sum_probs=89.8

Q ss_pred             cCCccccCCCceeEEEEeCccccC-C-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---ee
Q 009416          130 NLPEIIFYVESLHVLELSYCKLQQ-P-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DL  204 (535)
Q Consensus       130 ~lp~~l~~~~~L~~L~L~~~~~~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~  204 (535)
                      .+|..+  .+++++|+|++|.+.. + ..+.++++|++|+|++|.+....-...+.++++|+++.+..+..+..+   .+
T Consensus        23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f  100 (350)
T 4ay9_X           23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF  100 (350)
T ss_dssp             SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred             ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence            455433  2455666666665532 1 234556666666666654411100112344555555444444444443   23


Q ss_pred             CCCCCccEEEEeecC--CccEEe-ecCCcccEEEEeeec-ccCeE-EecCccc-ccceeEeeccCCChHHHHHhcCCCCC
Q 009416          205 VNLSNLKEIILVNTS--DIKRVE-IKTSNVNALAIHQTY-LFPIE-VNVSSCG-NLKCLKFDFLPIEDEWLCNGISKLPL  278 (535)
Q Consensus       205 ~~l~~L~~L~l~~c~--~l~~~~-~~~~~L~~L~l~~~~-~~~~~-~~~~~l~-~L~~L~L~~~~~~~~~l~~l~~~~~~  278 (535)
                      ..+++|++|+++++.  .+.... ....++..+++.++. ...++ ..+..++ .++.|++++|.+..-. .. ....++
T Consensus       101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~-~~-~f~~~~  178 (350)
T 4ay9_X          101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH-NS-AFNGTQ  178 (350)
T ss_dssp             CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC-TT-SSTTEE
T ss_pred             hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC-hh-hccccc
Confidence            445566666665551  111111 133344445444332 11111 1122222 3555555555554211 11 112345


Q ss_pred             ccEEEeecCCCCccccc----CCCCCceEEeccCcccccccc-cCCceeeEEEcCcch----hhcccCcccceeEE
Q 009416          279 LEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLI----SFSSNALSLSETSL  345 (535)
Q Consensus       279 L~~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~l~~-~~p~L~~L~~~g~~~----~~~~~l~~L~~L~l  345 (535)
                      |+.|.+.++..++.++.    ..++|+.|++++. ++..+.. ...+|+.|+..+...    ..+.++++|+.+++
T Consensus       179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l  253 (350)
T 4ay9_X          179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL  253 (350)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred             hhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence            55555555555555543    1234555555543 2333321 123344444333221    22345556666555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.99  E-value=1.3e-09  Score=108.25  Aligned_cols=213  Identities=13%  Similarity=0.010  Sum_probs=148.9

Q ss_pred             cCceEEEEeccCCCCccCCcc-ccCCCceeEEEEeCccccC--C-CCcccCcccceeE-eeeEeeChhHHHHHHhCCCcc
Q 009416          114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQ--P-SENVKLFSLRKLA-LREVCADDQAIASLISGCPLI  188 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~--~-~~~~~l~~L~~L~-L~~~~~~~~~l~~~~~~~p~L  188 (535)
                      +++++|+|..+..  ..+|.. +..+++|++|+|++|.+..  + ..+.++++|+++. +..+.+..- .+..+..+++|
T Consensus        30 ~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred             CCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence            5899999988653  478864 5678999999999998632  2 3456788877654 444554221 12336789999


Q ss_pred             cEEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEee----c-CCcccEEEEeeecccCeEEecCcccccceeEeec
Q 009416          189 EYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI----K-TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDF  261 (535)
Q Consensus       189 e~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~----~-~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~  261 (535)
                      ++|++++|......  ......++..|++.++..+..+..    . ...++.|+++++.-..++.......+|+.|.+..
T Consensus       107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD  186 (350)
T ss_dssp             CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred             ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence            99999999653222  233346778888888777776653    2 2468889999887433444455667899999986


Q ss_pred             cCCChHHHHHhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCccccccc--ccCCceeeEEEcCcc
Q 009416          262 LPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVE--IETPNLSIFKYHGDL  330 (535)
Q Consensus       262 ~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~l~--~~~p~L~~L~~~g~~  330 (535)
                      +..........+.++++|+.|+++++ .++.++. .+.+|++|.+.++.+++.+.  ...++|+.+.+....
T Consensus       187 ~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          187 NNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS  257 (350)
T ss_dssp             CTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred             CCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence            54444444455788999999999986 4667766 46789999999998887776  245678877775443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.97  E-value=5.2e-11  Score=119.04  Aligned_cols=88  Identities=13%  Similarity=0.044  Sum_probs=54.0

Q ss_pred             CCccccCCCceeEEEEeCccccCC------CCcccCc-ccceeEeeeEeeChh---HHHHHHhCC-CcccEEEEeecCCC
Q 009416          131 LPEIIFYVESLHVLELSYCKLQQP------SENVKLF-SLRKLALREVCADDQ---AIASLISGC-PLIEYLEIRSCEGL  199 (535)
Q Consensus       131 lp~~l~~~~~L~~L~L~~~~~~~~------~~~~~l~-~L~~L~L~~~~~~~~---~l~~~~~~~-p~Le~L~L~~c~~l  199 (535)
                      +|..+...++|++|+|++|.+...      ..+..++ +|++|+|++|.+++.   .+...+... ++|++|++++|..-
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            444444456699999999887433      2335677 888999988887433   334444444 88888888888642


Q ss_pred             cee------eeCCC-CCccEEEEeec
Q 009416          200 ESL------DLVNL-SNLKEIILVNT  218 (535)
Q Consensus       200 ~~~------~~~~l-~~L~~L~l~~c  218 (535)
                      ...      .+..+ ++|++|++++|
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N  119 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWN  119 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCC
Confidence            211      12223 46666666555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.94  E-value=5.4e-10  Score=106.26  Aligned_cols=144  Identities=15%  Similarity=0.208  Sum_probs=88.9

Q ss_pred             ccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEE
Q 009416          135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII  214 (535)
Q Consensus       135 l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~  214 (535)
                      +..+++|++|++++|.+...+.+..+++|++|++++|.+++-.  . +..+++|++|++++|..-+--.+.. ++|+.|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~  112 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF  112 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence            4566888888888887755566778888888888888774322  1 6778888888888885432112222 6677777


Q ss_pred             EeecCCccEEe-e-cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416          215 LVNTSDIKRVE-I-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       215 l~~c~~l~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      +++| .+..+. + .+++|+.|+++++....+ ..+..+++|+.|++++|.+.+.   ..+..+++|+.|+++++
T Consensus       113 L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          113 LDNN-ELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CCSS-CCSBSGGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred             ccCC-ccCCChhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence            7666 111111 1 456666666666652111 1455666666777766666554   23556666666666663

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.93  E-value=2.8e-10  Score=113.65  Aligned_cols=173  Identities=14%  Similarity=0.042  Sum_probs=98.0

Q ss_pred             cCceEEEEeccCCCCccCC-----ccccCCC-ceeEEEEeCccccCC--CCcccC-----cccceeEeeeEeeCh---hH
Q 009416          114 SEVKELVLVHWRSERRNLP-----EIIFYVE-SLHVLELSYCKLQQP--SENVKL-----FSLRKLALREVCADD---QA  177 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp-----~~l~~~~-~L~~L~L~~~~~~~~--~~~~~l-----~~L~~L~L~~~~~~~---~~  177 (535)
                      +++++|+++.+...  ..+     ..+..++ +|++|+|++|.+...  ..+..+     ++|++|+|++|.+++   ..
T Consensus        22 ~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           22 HGVTSLDLSLNNLY--SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             TTCCEEECTTSCGG--GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCceEEEccCCCCC--hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            35888888775432  222     3445566 788888888877432  223332     788888888887743   33


Q ss_pred             HHHHHhCC-CcccEEEEeecCCCcee------eeCC-CCCccEEEEeecCCc----cEEe---ecCC-cccEEEEeeec-
Q 009416          178 IASLISGC-PLIEYLEIRSCEGLESL------DLVN-LSNLKEIILVNTSDI----KRVE---IKTS-NVNALAIHQTY-  240 (535)
Q Consensus       178 l~~~~~~~-p~Le~L~L~~c~~l~~~------~~~~-l~~L~~L~l~~c~~l----~~~~---~~~~-~L~~L~l~~~~-  240 (535)
                      +...+..+ ++|++|++++|..-...      .+.. .++|++|++++|.--    ..+.   ...+ +|++|++++|. 
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence            44445555 78888888888642211      1222 247888888777211    1111   1233 77777777766 


Q ss_pred             ccCeEE----ecCcc-cccceeEeeccCCChHH---HHHhcCC-CCCccEEEeecCC
Q 009416          241 LFPIEV----NVSSC-GNLKCLKFDFLPIEDEW---LCNGISK-LPLLEYLSMTKCH  288 (535)
Q Consensus       241 ~~~~~~----~~~~l-~~L~~L~L~~~~~~~~~---l~~l~~~-~~~L~~L~L~~c~  288 (535)
                      ......    .+..+ ++|+.|+|++|.+++..   +...+.. .++|+.|+++++.
T Consensus       180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence            222111    22333 47777777777766522   2222222 3577777777753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.86  E-value=7e-10  Score=101.44  Aligned_cols=88  Identities=20%  Similarity=0.175  Sum_probs=54.1

Q ss_pred             CccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--e
Q 009416          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D  203 (535)
Q Consensus       128 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~  203 (535)
                      ...+|..+  .++|++|++++|.+...  ..+..+++|++|++++|.+..- ....+..+++|++|++++|....-.  .
T Consensus        19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   95 (208)
T 2o6s_A           19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGV   95 (208)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence            33555443  35788888888877433  2356788888888888776421 1223566788888888877532211  2


Q ss_pred             eCCCCCccEEEEeec
Q 009416          204 LVNLSNLKEIILVNT  218 (535)
Q Consensus       204 ~~~l~~L~~L~l~~c  218 (535)
                      +..+++|++|+++++
T Consensus        96 ~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           96 FDKLTQLKELALNTN  110 (208)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hcCccCCCEEEcCCC
Confidence            345566666666655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.85  E-value=4.2e-09  Score=110.76  Aligned_cols=136  Identities=16%  Similarity=0.134  Sum_probs=85.1

Q ss_pred             hcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      ..+++.|++..+...  .+|..++  ++|++|+|++|.+...+  ..+++|++|++++|.++.  ++. +..  +|++|+
T Consensus        58 ~~~L~~L~Ls~n~L~--~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           58 INQFSELQLNRLNLS--SLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKHLD  126 (571)
T ss_dssp             HTTCSEEECCSSCCS--CCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEE
T ss_pred             cCCccEEEeCCCCCC--ccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCEEE
Confidence            458899988876543  4777664  78999999999886434  668899999999988743  332 222  888998


Q ss_pred             EeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCC
Q 009416          193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       193 L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~  265 (535)
                      +++|...+ +.- .+++|+.|++++|. +..++..+++|+.|++++|....++. +.  ++|+.|+|++|.++
T Consensus       127 Ls~N~l~~-lp~-~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          127 VDNNQLTM-LPE-LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CCSSCCSC-CCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS
T ss_pred             CCCCcCCC-CCC-cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC
Confidence            88886432 322 45677777777661 22222244566666666655222222 32  55566666555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.84  E-value=1.6e-09  Score=102.23  Aligned_cols=78  Identities=14%  Similarity=0.098  Sum_probs=53.2

Q ss_pred             CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEEEe
Q 009416          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILV  216 (535)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~  216 (535)
                      .+.++++++++.+...+.. -.++|++|+++++.+.... ...+..+++|++|++++|......  .+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            5677899999887543221 2378999999999874322 123678999999999998643322  24556777777776


Q ss_pred             ec
Q 009416          217 NT  218 (535)
Q Consensus       217 ~c  218 (535)
                      +|
T Consensus        92 ~n   93 (251)
T 3m19_A           92 NN   93 (251)
T ss_dssp             TS
T ss_pred             CC
Confidence            66

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.82  E-value=2.7e-09  Score=73.79  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=33.9

Q ss_pred             CCCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhc
Q 009416            8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQ   47 (535)
Q Consensus         8 ~~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~   47 (535)
                      +.+.++.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4567999999999999999999999999999999998643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.81  E-value=8.6e-10  Score=104.85  Aligned_cols=140  Identities=12%  Similarity=0.066  Sum_probs=93.0

Q ss_pred             CceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeec
Q 009416          139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT  218 (535)
Q Consensus       139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c  218 (535)
                      .+++.++++++.+...+....+++|++|+++++.++.-  + .+..+++|++|++++|...+-..+..+++|+.|++++|
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence            45566667777665445567899999999999987432  2 36789999999999986433224677888999988888


Q ss_pred             --CCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416          219 --SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       219 --~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                        ..+..+..  ++|+.|+++++..... ..+..+++|+.|++++|.+++..   .+..+++|+.|+++++
T Consensus        96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A           96 RLKNLNGIPS--ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             CCSCCTTCCC--SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTS
T ss_pred             ccCCcCcccc--CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCC
Confidence              22222222  6777777777762221 24666777777777777666531   2455667777777664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.81  E-value=2.1e-09  Score=94.58  Aligned_cols=104  Identities=26%  Similarity=0.232  Sum_probs=76.6

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ++++.|++..+......+|..+..+++|++|++++|.+.....+..+++|++|++++|.+... ++..+..+++|++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence            578999998876544478888788899999999999886557778899999999999988542 4455667899999999


Q ss_pred             eecCCCc--e-eeeCCCCCccEEEEeec
Q 009416          194 RSCEGLE--S-LDLVNLSNLKEIILVNT  218 (535)
Q Consensus       194 ~~c~~l~--~-~~~~~l~~L~~L~l~~c  218 (535)
                      ++|....  . -.+..+++|+.|++++|
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence            9986432  1 13444555555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.81  E-value=1.2e-09  Score=96.30  Aligned_cols=127  Identities=20%  Similarity=0.139  Sum_probs=80.4

Q ss_pred             CCceeEEEEeCcccc---CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccE
Q 009416          138 VESLHVLELSYCKLQ---QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKE  212 (535)
Q Consensus       138 ~~~L~~L~L~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~  212 (535)
                      .++|++|++++|.+.   .+..+..+++|++|++++|.++..   ..+..+++|++|++++|.....+  .+.       
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------   92 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAE-------   92 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHH-------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHh-------
Confidence            377888888888775   334457788888888888877432   33566777777777777543311  111       


Q ss_pred             EEEeecCCccEEeecCCcccEEEEeeecccCe--EEecCcccccceeEeeccCCChHHH--HHhcCCCCCccEEEeecCC
Q 009416          213 IILVNTSDIKRVEIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWL--CNGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       213 L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l--~~l~~~~~~L~~L~L~~c~  288 (535)
                                    .+++|+.|+++++....+  ...+..+++|+.|++++|.++....  ...+..+++|+.|++.+|.
T Consensus        93 --------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           93 --------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             --------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             --------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence                          244455555554441111  1456677888888888877665322  2346778888888888764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.75  E-value=2e-09  Score=92.64  Aligned_cols=104  Identities=30%  Similarity=0.310  Sum_probs=78.6

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ++++.|++..+......+|..+..+++|++|++++|.+.....+..+++|++|++++|.++.. ++..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence            578999988876543478888888999999999999886557778899999999999988543 4555677999999999


Q ss_pred             eecCCCce---eeeCCCCCccEEEEeec
Q 009416          194 RSCEGLES---LDLVNLSNLKEIILVNT  218 (535)
Q Consensus       194 ~~c~~l~~---~~~~~l~~L~~L~l~~c  218 (535)
                      ++|...+.   ..+..+++|++|++++|
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            99874331   13444556666665554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.70  E-value=9.4e-09  Score=95.46  Aligned_cols=135  Identities=15%  Similarity=0.125  Sum_probs=83.5

Q ss_pred             CCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--
Q 009416          127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--  202 (535)
Q Consensus       127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--  202 (535)
                      ....+|..+.  ++|++|+|++|.+...  ..+..+++|++|+|++|.++.- ....+..+++|+.|+|++|... .+  
T Consensus        30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~-~l~~  105 (229)
T 3e6j_A           30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLT-VLPS  105 (229)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCC-ccCh
Confidence            3446776543  8899999999888443  4567889999999998887321 1123567888899988888532 22  


Q ss_pred             -eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccE
Q 009416          203 -DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY  281 (535)
Q Consensus       203 -~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~  281 (535)
                       .+..+++|+.|+++++                     ....++..+..+++|+.|+|++|.+..... ..+..+++|+.
T Consensus       106 ~~~~~l~~L~~L~Ls~N---------------------~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~  163 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCN---------------------KLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTH  163 (229)
T ss_dssp             TTTTTCTTCCEEECCSS---------------------CCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred             hHhCcchhhCeEeccCC---------------------cccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCE
Confidence             2344566666666554                     311223344556666666666666553221 23455667777


Q ss_pred             EEeecC
Q 009416          282 LSMTKC  287 (535)
Q Consensus       282 L~L~~c  287 (535)
                      |++.++
T Consensus       164 L~l~~N  169 (229)
T 3e6j_A          164 AYLFGN  169 (229)
T ss_dssp             EECTTS
T ss_pred             EEeeCC
Confidence            777664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.69  E-value=8.7e-10  Score=94.98  Aligned_cols=57  Identities=12%  Similarity=0.039  Sum_probs=37.7

Q ss_pred             CceeEEEEeCcccc---CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCC
Q 009416          139 ESLHVLELSYCKLQ---QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG  198 (535)
Q Consensus       139 ~~L~~L~L~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~  198 (535)
                      ++|++|++++|.+.   .+..+..+++|++|++++|.++..   ..+..+++|++|++++|..
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i   76 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRV   76 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcc
Confidence            67788888887765   334456777788888877766432   3355667777777766653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.67  E-value=5.9e-09  Score=96.18  Aligned_cols=144  Identities=15%  Similarity=0.064  Sum_probs=79.5

Q ss_pred             eEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC---CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          117 KELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       117 ~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      +.+++....  ...+|..+.  +.+++|+|++|.+...   ..+..+++|++|+|++|.++.-. ...+..+++|++|+|
T Consensus        14 ~~l~~s~n~--l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQK--LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSC--CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCC--cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEEC
Confidence            344444332  335666543  4567888888877432   23567888888888888763211 123567788888888


Q ss_pred             eecCCCcee--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHH
Q 009416          194 RSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (535)
Q Consensus       194 ~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~  270 (535)
                      ++|....-.  .+..+++|++|+++++                     . ....+..+.++++|+.|+|++|.++.....
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSN---------------------RITCVGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTS---------------------CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCC---------------------cCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence            877543211  2444555555555544                     2 111123345555666666665555443222


Q ss_pred             HhcCCCCCccEEEeecC
Q 009416          271 NGISKLPLLEYLSMTKC  287 (535)
Q Consensus       271 ~l~~~~~~L~~L~L~~c  287 (535)
                      . +..+++|+.|++.++
T Consensus       148 ~-~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          148 A-FDTLHSLSTLNLLAN  163 (220)
T ss_dssp             T-TTTCTTCCEEECCSC
T ss_pred             H-hcCCCCCCEEEecCc
Confidence            2 445566666666553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.67  E-value=1.4e-08  Score=93.63  Aligned_cols=135  Identities=13%  Similarity=0.080  Sum_probs=80.9

Q ss_pred             CCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--
Q 009416          127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--  202 (535)
Q Consensus       127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--  202 (535)
                      ....+|..+.  ++|++|+|++|.+...  ..+..+++|++|+|++|.++.-. +..+.++++|++|+|++|... .+  
T Consensus        22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~-~l~~   97 (220)
T 2v9t_B           22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKIT-ELPK   97 (220)
T ss_dssp             CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCC-ccCH
Confidence            3446676543  6888999998877432  35677888999999888774321 223567888888888887543 22  


Q ss_pred             -eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCcc
Q 009416          203 -DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE  280 (535)
Q Consensus       203 -~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~  280 (535)
                       .+..+++|+.|+++++                     . ....+..+..+++|+.|+|++|.+..... ..+..+++|+
T Consensus        98 ~~f~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~  155 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNAN---------------------KINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQ  155 (220)
T ss_dssp             TTTTTCTTCCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCC
T ss_pred             hHccCCCCCCEEECCCC---------------------CCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCC
Confidence             2344556666665554                     2 11112234555666666666665554322 1244566666


Q ss_pred             EEEeecC
Q 009416          281 YLSMTKC  287 (535)
Q Consensus       281 ~L~L~~c  287 (535)
                      .|++.++
T Consensus       156 ~L~L~~N  162 (220)
T 2v9t_B          156 TMHLAQN  162 (220)
T ss_dssp             EEECCSS
T ss_pred             EEEeCCC
Confidence            6666653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.64  E-value=5e-09  Score=95.71  Aligned_cols=102  Identities=22%  Similarity=0.108  Sum_probs=72.8

Q ss_pred             cCceEEEEeccCCCCccCCcc-ccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      +++++|++..+...  .+|.. +..+++|++|++++|.+...  ..+..+++|++|++++|.++.- ....+..+++|++
T Consensus        28 ~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  104 (208)
T 2o6s_A           28 AQTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKE  104 (208)
T ss_dssp             TTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCccC--cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCE
Confidence            47888988876543  45554 56789999999999988543  3357899999999999987421 1233578999999


Q ss_pred             EEEeecCCCcee--eeCCCCCccEEEEeec
Q 009416          191 LEIRSCEGLESL--DLVNLSNLKEIILVNT  218 (535)
Q Consensus       191 L~L~~c~~l~~~--~~~~l~~L~~L~l~~c  218 (535)
                      |++++|....-.  .+..+++|+.|++++|
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence            999998643211  2445667777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.62  E-value=1.3e-08  Score=93.79  Aligned_cols=131  Identities=14%  Similarity=0.064  Sum_probs=89.3

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      ..+++|++..+......-+..+..+++|++|+|++|.+...  ..+..+++|++|+|++|.++.. ....+..+++|++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEE
Confidence            46788888876544322223467889999999999988433  4678999999999999988432 22346789999999


Q ss_pred             EEeecCCCce--eeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCCh
Q 009416          192 EIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIED  266 (535)
Q Consensus       192 ~L~~c~~l~~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~  266 (535)
                      ++++|.....  -.+..+++|+.|++++|                     . ....+..+..+++|+.|++++|.+..
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDN---------------------QITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTS---------------------CCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCC---------------------cCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            9999975432  13445566666665554                     3 11113345667778888887776643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.59  E-value=4.1e-08  Score=103.21  Aligned_cols=158  Identities=16%  Similarity=0.110  Sum_probs=111.8

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ++++.|+++.+...  .+|   ..+++|++|+|++|.+...+.+..  +|++|++++|.++.  ++.   .+++|+.|++
T Consensus        80 ~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM--LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence            57999999887654  677   346999999999998854433333  99999999998853  222   6889999999


Q ss_pred             eecCCCceeeeCCCCCccEEEEeec--CCccEEeecCCcccEEEEeeecccCeEEecCccccc-------ceeEeeccCC
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNL-------KCLKFDFLPI  264 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L-------~~L~L~~~~~  264 (535)
                      ++|... .+.- .+++|+.|++++|  ..+..  +. ++|+.|++++|....++. +..  +|       +.|+|++|.+
T Consensus       148 s~N~l~-~lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          148 DNNQLT-MLPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             CSSCCS-CCCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCC
T ss_pred             CCCccC-cCCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcc
Confidence            998643 2322 4689999999998  33333  23 899999999988333344 433  66       9999999888


Q ss_pred             ChHHHHHhcCCCCCccEEEeecCCCCccc
Q 009416          265 EDEWLCNGISKLPLLEYLSMTKCHKLTSV  293 (535)
Q Consensus       265 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l  293 (535)
                      +. .+.. +..+++|+.|++++++..+.+
T Consensus       220 ~~-lp~~-l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          220 TH-IPEN-ILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             CC-CCGG-GGGSCTTEEEECCSSSCCHHH
T ss_pred             ee-cCHH-HhcCCCCCEEEeeCCcCCCcC
Confidence            74 2333 344889999999987654433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.59  E-value=1.4e-08  Score=101.16  Aligned_cols=87  Identities=22%  Similarity=0.266  Sum_probs=56.3

Q ss_pred             CccCCccccCCCceeEEEEeCccccCC--CCcc-cCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--
Q 009416          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENV-KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--  202 (535)
Q Consensus       128 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~-~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--  202 (535)
                      ...+|..+.  +.++.|+|++|.+...  ..+. .+++|++|+|++|.++.-. ...+..+++|++|+|++|.. ..+  
T Consensus        30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~  105 (361)
T 2xot_A           30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHL-HTLDE  105 (361)
T ss_dssp             CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECT
T ss_pred             cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcC-CcCCH
Confidence            345665443  4678888888877432  3344 7888888888888774221 12356788888888888763 333  


Q ss_pred             -eeCCCCCccEEEEeec
Q 009416          203 -DLVNLSNLKEIILVNT  218 (535)
Q Consensus       203 -~~~~l~~L~~L~l~~c  218 (535)
                       .+..+++|+.|++++|
T Consensus       106 ~~~~~l~~L~~L~L~~N  122 (361)
T 2xot_A          106 FLFSDLQALEVLLLYNN  122 (361)
T ss_dssp             TTTTTCTTCCEEECCSS
T ss_pred             HHhCCCcCCCEEECCCC
Confidence             2445667777777665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.59  E-value=2.2e-09  Score=97.29  Aligned_cols=146  Identities=17%  Similarity=0.137  Sum_probs=83.7

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEe
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR  194 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~  194 (535)
                      .++...+.........+|..+..+++|++|++++|.+...+.+..+++|++|++++|.++.  ++..+..+++|++|+++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWIS  101 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECc
Confidence            3444444443333445555777788888888888877544567778888888888887742  23334456778888887


Q ss_pred             ecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeE--EecCcccccceeEeeccCCChHH----
Q 009416          195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE--VNVSSCGNLKCLKFDFLPIEDEW----  268 (535)
Q Consensus       195 ~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~----  268 (535)
                      +|....--.+.                     .+++|+.|+++++.....+  ..+..+++|+.|++++|.+.+..    
T Consensus       102 ~N~l~~l~~~~---------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~  160 (198)
T 1ds9_A          102 YNQIASLSGIE---------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN  160 (198)
T ss_dssp             EEECCCHHHHH---------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred             CCcCCcCCccc---------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence            77432100111                     2344444444444411111  23556667777777766654431    


Q ss_pred             -----HHHhcCCCCCccEEE
Q 009416          269 -----LCNGISKLPLLEYLS  283 (535)
Q Consensus       269 -----l~~l~~~~~~L~~L~  283 (535)
                           ....+..+++|+.|+
T Consensus       161 ~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          161 ATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             THHHHHHHHHHHCSSCSEEC
T ss_pred             chHHHHHHHHHhCCCcEEEC
Confidence                 223345677777765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.58  E-value=1.9e-08  Score=92.68  Aligned_cols=142  Identities=11%  Similarity=0.078  Sum_probs=90.7

Q ss_pred             eEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEeec
Q 009416          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNT  218 (535)
Q Consensus       142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c  218 (535)
                      +.++.+++.+...|. .-.++|+.|++++|.+..-. ...+..+++|++|+|++|... .+   .+.++++|++|++++ 
T Consensus        14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~-   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG-   89 (220)
T ss_dssp             TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCS-
T ss_pred             CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCC-
Confidence            456777776643322 12378999999998774211 123567888999998888643 22   344445555555544 


Q ss_pred             CCccEEeecCCcccEEEEeeecccCeE-EecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc--
Q 009416          219 SDIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--  295 (535)
Q Consensus       219 ~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~--  295 (535)
                                          +....++ ..+.++++|+.|+|++|.+....... +..+++|+.|+++++.. +.++.  
T Consensus        90 --------------------N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l-~~~~~~~  147 (220)
T 2v9t_B           90 --------------------NKITELPKSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNKL-QTIAKGT  147 (220)
T ss_dssp             --------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCC-SCCCTTT
T ss_pred             --------------------CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCcC-CEECHHH
Confidence                                4411122 23578899999999999887644333 67899999999998653 33332  


Q ss_pred             --CCCCCceEEeccCc
Q 009416          296 --SSPCLKTLILECCD  309 (535)
Q Consensus       296 --~~~~L~~L~l~~c~  309 (535)
                        ..++|+.|++.+.+
T Consensus       148 ~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             HhCCCCCCEEEeCCCC
Confidence              34678888887643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.54  E-value=3.5e-08  Score=91.60  Aligned_cols=142  Identities=15%  Similarity=0.059  Sum_probs=92.6

Q ss_pred             eeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEee
Q 009416          141 LHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVN  217 (535)
Q Consensus       141 L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~  217 (535)
                      -+.++.+++.+...+. +-.++|++|+|++|.+.... +..+..+++|++|+|++|.. ..+   .+..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence            3457777776643322 23489999999999884321 23367889999999998864 333   134455555555554


Q ss_pred             cCCccEEeecCCcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc-
Q 009416          218 TSDIKRVEIKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-  295 (535)
Q Consensus       218 c~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~-  295 (535)
                      |                     ....+ ...+..+++|+.|++++|.+..  +...+..+++|+.|+++++. +..++. 
T Consensus        98 N---------------------~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~~~  153 (229)
T 3e6j_A           98 N---------------------QLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQ-LKSIPHG  153 (229)
T ss_dssp             S---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSC-CCCCCTT
T ss_pred             C---------------------cCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCc-CCccCHH
Confidence            4                     31111 2235788999999999998873  22235788999999999863 444442 


Q ss_pred             ---CCCCCceEEeccCc
Q 009416          296 ---SSPCLKTLILECCD  309 (535)
Q Consensus       296 ---~~~~L~~L~l~~c~  309 (535)
                         ..++|+.|++.+.+
T Consensus       154 ~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTTCTTCCEEECTTSC
T ss_pred             HHhCCCCCCEEEeeCCC
Confidence               34688888887643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.54  E-value=1.8e-08  Score=89.41  Aligned_cols=59  Identities=7%  Similarity=-0.067  Sum_probs=34.7

Q ss_pred             cCCCceeEEEEeCccccCCCCcccCc-ccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecC
Q 009416          136 FYVESLHVLELSYCKLQQPSENVKLF-SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE  197 (535)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~  197 (535)
                      ..+++|++|++++|.+...+.+..+. +|++|++++|.++.-   ..+..+++|++|++++|.
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc
Confidence            34566777777777664333444443 677777777666431   224556666666666664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.50  E-value=1.4e-07  Score=82.44  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=72.8

Q ss_pred             cCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEe-eChhHHHHHHhC---CCcccEEEEeecCCCcee-
Q 009416          130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISG---CPLIEYLEIRSCEGLESL-  202 (535)
Q Consensus       130 ~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~~~~~---~p~Le~L~L~~c~~l~~~-  202 (535)
                      .+|.......+|++|++++|.+...  ..+..+++|++|+|++|. +++..+..+...   |++|++|+|++|..++.- 
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            5665443456899999999986432  455789999999999996 688888886542   679999999999987543 


Q ss_pred             --eeCCCCCccEEEEeecCCccE
Q 009416          203 --DLVNLSNLKEIILVNTSDIKR  223 (535)
Q Consensus       203 --~~~~l~~L~~L~l~~c~~l~~  223 (535)
                        .+..+++|++|++++|+.+..
T Consensus       132 l~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCCc
Confidence              455688999999999876654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.42  E-value=3.5e-08  Score=87.46  Aligned_cols=130  Identities=18%  Similarity=0.166  Sum_probs=75.6

Q ss_pred             CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeecCCccEEe----ecCCc
Q 009416          155 SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE----IKTSN  230 (535)
Q Consensus       155 ~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~~~  230 (535)
                      +...++++|++|++++|.++.  ++.+...+|+|++|++++|...+--.+..+++|++|++++| .+..++    ..+++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPD   89 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred             HhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence            455678899999999998742  23334445699999999986433225556677888887776 222332    24566


Q ss_pred             ccEEEEeeecccCeEE--ecCcccccceeEeeccCCChHH--HHHhcCCCCCccEEEeecC
Q 009416          231 VNALAIHQTYLFPIEV--NVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       231 L~~L~l~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~--l~~l~~~~~~L~~L~L~~c  287 (535)
                      |+.|+++++....++.  .+..+++|+.|++++|.+....  ....+..+|+|+.|++.++
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            6666666655222222  4455566666666655554311  0112344555665555553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=2.3e-07  Score=91.13  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=17.2

Q ss_pred             CcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecC
Q 009416          160 LFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE  197 (535)
Q Consensus       160 l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~  197 (535)
                      +++|++|+|.. .+..- -...+.+|++|++|.+..+.
T Consensus       100 ~~~L~~l~L~~-~i~~I-~~~aF~~~~~L~~l~l~~n~  135 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNI-EDAAFKGCDNLKICQIRKKT  135 (329)
T ss_dssp             CTTCCC-CBCT-TCCEE-CTTTTTTCTTCCEEEBCCSS
T ss_pred             cCCCcEEECCc-cccch-hHHHhhcCcccceEEcCCCC
Confidence            66666666655 22100 01124556666666666553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.39  E-value=8.8e-08  Score=95.40  Aligned_cols=102  Identities=22%  Similarity=0.107  Sum_probs=74.4

Q ss_pred             cCceEEEEeccCCCCccCCccc-c-CCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416          114 SEVKELVLVHWRSERRNLPEII-F-YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l-~-~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le  189 (535)
                      ..++.|+|+.+..  ..++... . .+++|++|+|++|.+...  ..+..+++|++|+|++|.+..- ....+..+++|+
T Consensus        39 ~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence            4678888887643  3455543 3 789999999999988432  4578999999999999987432 123367899999


Q ss_pred             EEEEeecCCCce--eeeCCCCCccEEEEeec
Q 009416          190 YLEIRSCEGLES--LDLVNLSNLKEIILVNT  218 (535)
Q Consensus       190 ~L~L~~c~~l~~--~~~~~l~~L~~L~l~~c  218 (535)
                      +|+|++|....-  -.+..+++|+.|++++|
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence            999999975322  14556777888877776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.36  E-value=1.6e-06  Score=85.90  Aligned_cols=197  Identities=15%  Similarity=0.140  Sum_probs=108.4

Q ss_pred             HHHHHHHHhhcCCCCCceeEEEEEEecCCCC--CChhhHHHHHH-HHHhcCceEEEEeccCCC--------CccCCcccc
Q 009416           68 LTSLEPALLNRQRKMISIKKFSLELDLINSP--ENASLAGRCLG-LAIESEVKELVLVHWRSE--------RRNLPEIIF  136 (535)
Q Consensus        68 ~~~v~~~L~~~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~wl~-~~~~~~l~~L~L~~~~~~--------~~~lp~~l~  136 (535)
                      .+.+.+++..  .....++.+.+....  ++  .....+..++. ....++|+.|.+......        ...++..+.
T Consensus        94 ~~~~~~fl~~--~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~  169 (362)
T 2ra8_A           94 VNLMDKILKD--KKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD  169 (362)
T ss_dssp             CCHHHHHHHC--TTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred             HHHHHHHhcC--CCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence            3445555532  233567777666332  11  11123444443 223479999998643211        113445556


Q ss_pred             CCCceeEEEEeCcc-ccCCCCcccCcccceeEeeeEeeChhHHHHHH-hCCCcccEEEEeecCC-------Ccee----e
Q 009416          137 YVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLI-SGCPLIEYLEIRSCEG-------LESL----D  203 (535)
Q Consensus       137 ~~~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~-~~~p~Le~L~L~~c~~-------l~~~----~  203 (535)
                      .+|+|+.|+|++|. +..++ + .+++|++|+|..+.++...+..+. ..+|+|++|+|..+..       +..+    .
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            78999999999873 33323 3 489999999998888777776654 3699999999864311       1111    1


Q ss_pred             eCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhc---CCCCCcc
Q 009416          204 LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI---SKLPLLE  280 (535)
Q Consensus       204 ~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~---~~~~~L~  280 (535)
                      ...+|+|++|.+.+|.......                 ........+++|++|+|+.|.+.+.....+.   .++++|+
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~-----------------~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~  310 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVV-----------------EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK  310 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHH-----------------HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred             cCCCCCcCEEeCCCCCCchHHH-----------------HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence            1234566666655542110000                 0000012356677777777766665444433   2356677


Q ss_pred             EEEeecC
Q 009416          281 YLSMTKC  287 (535)
Q Consensus       281 ~L~L~~c  287 (535)
                      .|+++.|
T Consensus       311 ~L~L~~n  317 (362)
T 2ra8_A          311 FINMKYN  317 (362)
T ss_dssp             EEECCSB
T ss_pred             EEECCCC
Confidence            7776654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.28  E-value=2.1e-08  Score=100.15  Aligned_cols=162  Identities=17%  Similarity=0.172  Sum_probs=83.8

Q ss_pred             HHhcCceEEEEeccCCCCc---cCCccccC-CCceeEEEEeCccccCC---CCcccCcccceeEeeeEeeChhHHHHH--
Q 009416          111 AIESEVKELVLVHWRSERR---NLPEIIFY-VESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASL--  181 (535)
Q Consensus       111 ~~~~~l~~L~L~~~~~~~~---~lp~~l~~-~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~~--  181 (535)
                      ...++++.|++..+.....   .+...+.. +++|++|+|++|.+...   .....+++|++|+|++|.+++.....+  
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            3456788888776543221   12222222 36788888888766321   122346678888888887765444332  


Q ss_pred             -H-hCCCcccEEEEeecCCCc----ee--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccc
Q 009416          182 -I-SGCPLIEYLEIRSCEGLE----SL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGN  253 (535)
Q Consensus       182 -~-~~~p~Le~L~L~~c~~l~----~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  253 (535)
                       + ..+++|++|+|++|..-.    .+  .+...++|++|++++|. +....               ...+...+...++
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g---------------~~~L~~~L~~~~~  212 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEG---------------LELLAAQLDRNRQ  212 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHH---------------HHHHHHHGGGCSC
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHH---------------HHHHHHHHhcCCC
Confidence             2 346777777777775311    01  11233445555444431 10000               0001122344556


Q ss_pred             cceeEeeccCCChHHHHH---hcCCCCCccEEEeecCC
Q 009416          254 LKCLKFDFLPIEDEWLCN---GISKLPLLEYLSMTKCH  288 (535)
Q Consensus       254 L~~L~L~~~~~~~~~l~~---l~~~~~~L~~L~L~~c~  288 (535)
                      |+.|+|++|.+++.....   .+...++|++|+|+++.
T Consensus       213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            777777777776644332   23345667777776653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=4.4e-07  Score=89.05  Aligned_cols=19  Identities=16%  Similarity=0.225  Sum_probs=12.6

Q ss_pred             hhHHhhhhhccCcccceEE
Q 009416          430 IANVLDGLLWTSPHAEMVS  448 (535)
Q Consensus       430 l~~l~~~ll~~~p~Le~L~  448 (535)
                      +..+....|..|++|++++
T Consensus       309 i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          309 ITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CCEECTTTTCTTCCCCEEE
T ss_pred             cCccchhhhcCCcchhhhc
Confidence            3445555777778887775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.27  E-value=2e-07  Score=83.82  Aligned_cols=123  Identities=18%  Similarity=0.112  Sum_probs=71.7

Q ss_pred             eEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC-C--CcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          117 KELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-S--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       117 ~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~-~--~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      +.+++...  ....+|..+.  ++|++|++++|.+... +  .+..+++|++|+|++|.++... +..+..+++|++|+|
T Consensus        11 ~~l~~s~~--~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGR--GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTS--CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred             CEEEcCCC--CcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEEC
Confidence            44554443  3346776554  3888888888877433 2  2678888888888888774321 223567788888888


Q ss_pred             eecCCCcee--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416          194 RSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       194 ~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~  265 (535)
                      ++|......  .+..+++|++|+++++                     . ....+..+..+++|+.|++++|.+.
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDN---------------------QISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSS---------------------CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCC---------------------cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            887543211  2334455555554443                     2 1111233455666666666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.20  E-value=1.5e-07  Score=84.99  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             CcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEE
Q 009416          156 ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALA  235 (535)
Q Consensus       156 ~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~  235 (535)
                      .+..+++|++|++++|.++.  ++ .+..+++|++|++++|..                    ..+......+++|+.|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l--------------------~~l~~~~~~~~~L~~L~   99 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI--------------------KKIENLDAVADTLEELW   99 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE--------------------CSCSSHHHHHHHCSEEE
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc--------------------ccccchhhcCCcCCEEE
Confidence            34566667777776666633  12 244556666666666531                    11111112346777888


Q ss_pred             EeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCC
Q 009416          236 IHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       236 l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~  288 (535)
                      ++++....++ .+..+++|+.|++++|.+........+..+++|+.|++.+++
T Consensus       100 L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          100 ISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            8777622233 577889999999999988864432346788999999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.19  E-value=3.8e-07  Score=96.21  Aligned_cols=99  Identities=14%  Similarity=0.124  Sum_probs=50.3

Q ss_pred             ccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEEEeec--CCccEEeecCCcccEEEEe
Q 009416          162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIH  237 (535)
Q Consensus       162 ~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c--~~l~~~~~~~~~L~~L~l~  237 (535)
                      .|+.|+|++|.++.  ++. +..+++|+.|+|++|... .+  .+..+++|+.|++++|  ..+. ....+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence            47777777776643  233 566777777777777532 22  3444555555555554  1111 00133444444444


Q ss_pred             eec-ccCe-EEecCcccccceeEeeccCCC
Q 009416          238 QTY-LFPI-EVNVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       238 ~~~-~~~~-~~~~~~l~~L~~L~L~~~~~~  265 (535)
                      +|. .... +..++.+++|+.|+|++|.++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            444 1111 334445555555555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.18  E-value=1e-06  Score=87.20  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=65.3

Q ss_pred             HHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeecCCc----cEEee-cCCcccEEEEeeec---ccC--e---
Q 009416          178 IASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDI----KRVEI-KTSNVNALAIHQTY---LFP--I---  244 (535)
Q Consensus       178 l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l----~~~~~-~~~~L~~L~l~~~~---~~~--~---  244 (535)
                      +..++..+|+|++|.|++|..+.-..+. +++|++|++..|.--    ..+.. .+|+|++|++..+.   .+.  +   
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            5566788999999999887433211222 588999999876311    11111 57888888875321   100  0   


Q ss_pred             EEec--CcccccceeEeeccCCChHHHHHhc--CCCCCccEEEeecC
Q 009416          245 EVNV--SSCGNLKCLKFDFLPIEDEWLCNGI--SKLPLLEYLSMTKC  287 (535)
Q Consensus       245 ~~~~--~~l~~L~~L~L~~~~~~~~~l~~l~--~~~~~L~~L~L~~c  287 (535)
                      ...+  ..+|+|+.|.|.++.+.+.....+.  ..+|+|++|+|+.+
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            0111  3477888888887777654433322  35677777777653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.15  E-value=1.1e-06  Score=78.84  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=73.9

Q ss_pred             cCceEEEEeccCCCCccCCc--cccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCccc
Q 009416          114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE  189 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le  189 (535)
                      .++++|.+..+...  .++.  .+..+++|++|+|++|.+...  ..+..+++|++|+|++|.++... ...+..+++|+
T Consensus        29 ~~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~  105 (192)
T 1w8a_A           29 LHTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCC
T ss_pred             CCCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCC
Confidence            38899998876543  4554  377889999999999988543  56789999999999999884322 22356789999


Q ss_pred             EEEEeecCCCcee--eeCCCCCccEEEEeec
Q 009416          190 YLEIRSCEGLESL--DLVNLSNLKEIILVNT  218 (535)
Q Consensus       190 ~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c  218 (535)
                      +|++++|...+..  .+..+++|++|+++++
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            9999999654322  3445566666665554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=1.5e-06  Score=75.93  Aligned_cols=94  Identities=14%  Similarity=0.252  Sum_probs=64.9

Q ss_pred             cccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeec
Q 009416          161 FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY  240 (535)
Q Consensus       161 ~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~  240 (535)
                      ..|+.|+++++.+++..+..+ .+|++|++|+|++|..++...+..+..++                             
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-----------------------------  110 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLE-----------------------------  110 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCH-----------------------------
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcc-----------------------------
Confidence            579999999999988888764 78999999999999876543222110000                             


Q ss_pred             ccCeEEecCcccccceeEeecc-CCChHHHHHhcCCCCCccEEEeecCCCCccc
Q 009416          241 LFPIEVNVSSCGNLKCLKFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTSV  293 (535)
Q Consensus       241 ~~~~~~~~~~l~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l  293 (535)
                              ..+++|++|+|++| .+++..+.. +..+++|++|++++|+.++..
T Consensus       111 --------~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          111 --------NLQKSMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             --------HHHHHCCEEEEESCTTCCHHHHHH-GGGCTTCCEEEEESCTTCCCH
T ss_pred             --------cccCCCCEEEcCCCCcCCHHHHHH-HhcCCCCCEEECCCCCCCCch
Confidence                    01245666666655 377777777 456888888888888776653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.13  E-value=1.5e-06  Score=78.01  Aligned_cols=114  Identities=15%  Similarity=0.056  Sum_probs=65.8

Q ss_pred             CccCCccccCCCceeEEEEeCccccC-CCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--ee
Q 009416          128 RRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL  204 (535)
Q Consensus       128 ~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~  204 (535)
                      ...+|..+.  ++|++|+|++|.+.. +..+..+++|++|+|++|.++.-. ...+.++++|++|+|++|....-.  .+
T Consensus        22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f   98 (193)
T 2wfh_A           22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLRCIPPRTF   98 (193)
T ss_dssp             CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccCEeCHHHh
Confidence            345665443  577888888877743 255667778888888877763211 123566777777777777532211  23


Q ss_pred             CCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeE-EecCcccccceeEeeccCCC
Q 009416          205 VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       205 ~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~  265 (535)
                      ..+++|+.|+++++                     ....++ ..+..+++|+.|++++|.+.
T Consensus        99 ~~l~~L~~L~L~~N---------------------~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           99 DGLKSLRLLSLHGN---------------------DISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTCTTCCEEECCSS---------------------CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCCEEECCCC---------------------CCCeeChhhhhcCccccEEEeCCCCee
Confidence            34455555555444                     311111 23556777777777776653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.12  E-value=9e-08  Score=104.20  Aligned_cols=114  Identities=17%  Similarity=0.179  Sum_probs=67.8

Q ss_pred             CccccCCCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCC
Q 009416          132 PEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLS  208 (535)
Q Consensus       132 p~~l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~  208 (535)
                      |..+..+++|+.|+|++|.+. .+..+..+++|++|+|++|.++  .++..+..+++|+.|+|++|... .+  .+..  
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--  291 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS--  291 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG--
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC--
Confidence            444556677777777777663 3345566777777777777664  22333566777777777776532 22  2233  


Q ss_pred             CccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHH
Q 009416          209 NLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWL  269 (535)
Q Consensus       209 ~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l  269 (535)
                                         +++|+.|++++|....++..++.+++|+.|+|++|.+++..+
T Consensus       292 -------------------l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          292 -------------------CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             -------------------GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             -------------------CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence                               445555555555533345567888888888888888876433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.10  E-value=1.7e-07  Score=93.51  Aligned_cols=143  Identities=13%  Similarity=0.075  Sum_probs=91.1

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCc-----ccCcccceeEeeeEeeChhH---HHHHHh
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SEN-----VKLFSLRKLALREVCADDQA---IASLIS  183 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~-----~~l~~L~~L~L~~~~~~~~~---l~~~~~  183 (535)
                      +++++|+|+.+......+......+++|++|+|++|.+...  ..+     ...++|++|+|++|.+++..   +...+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            58999999887644333332223357899999999987432  111     24688999999999985544   444457


Q ss_pred             CCCcccEEEEeecCCCce----e--eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCccccccee
Q 009416          184 GCPLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL  257 (535)
Q Consensus       184 ~~p~Le~L~L~~c~~l~~----~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L  257 (535)
                      .+++|++|+|++|..-..    +  .+...++|+.|++++|. +...               ....+...+...++|++|
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~---------------g~~~l~~~L~~~~~L~~L  244 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDT---------------AALALARAAREHPSLELL  244 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHH---------------HHHHHHHHHHHCSSCCEE
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHH---------------HHHHHHHHHHhCCCCCEE
Confidence            899999999999974211    1  23334566666666551 1000               000111224456889999


Q ss_pred             EeeccCCChHHHHHh
Q 009416          258 KFDFLPIEDEWLCNG  272 (535)
Q Consensus       258 ~L~~~~~~~~~l~~l  272 (535)
                      +|++|.+++.....+
T Consensus       245 ~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          245 HLYFNELSSEGRQVL  259 (372)
T ss_dssp             ECTTSSCCHHHHHHH
T ss_pred             eccCCCCCHHHHHHH
Confidence            999999988766553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.09  E-value=1.7e-06  Score=91.31  Aligned_cols=98  Identities=20%  Similarity=0.181  Sum_probs=55.2

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCcccc-CCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .++.|+++.+...  .+|. +..+++|+.|+|++|.+. .|..++.+++|++|+|++|.++.  ++ .++.+++|+.|+|
T Consensus       442 ~L~~L~Ls~n~l~--~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLT--VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCS--SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCC--CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence            4666666654332  3555 666677777777776663 33456667777777777766643  22 3566667777777


Q ss_pred             eecCCCce---eeeCCCCCccEEEEeec
Q 009416          194 RSCEGLES---LDLVNLSNLKEIILVNT  218 (535)
Q Consensus       194 ~~c~~l~~---~~~~~l~~L~~L~l~~c  218 (535)
                      ++|...+.   -.+..+++|+.|++++|
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            66643221   12334444555444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.07  E-value=2.8e-06  Score=76.31  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=75.2

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      +++++|++..+...  .+|..+..+++|++|+|++|.+...  ..+..+++|++|+|++|.++.-. ...+..+++|+.|
T Consensus        31 ~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEE
Confidence            47899998876543  7888888899999999999998543  45789999999999999884322 2236789999999


Q ss_pred             EEeecCCCcee---eeCCCCCccEEEEeec
Q 009416          192 EIRSCEGLESL---DLVNLSNLKEIILVNT  218 (535)
Q Consensus       192 ~L~~c~~l~~~---~~~~l~~L~~L~l~~c  218 (535)
                      +|++|... .+   .+..+++|+.|++.++
T Consensus       108 ~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          108 SLHGNDIS-VVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             ECCSSCCC-BCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCCCC-eeChhhhhcCccccEEEeCCC
Confidence            99998643 22   2344556666655543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.00  E-value=2.2e-06  Score=75.73  Aligned_cols=67  Identities=24%  Similarity=0.154  Sum_probs=41.3

Q ss_pred             CccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecC
Q 009416          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE  197 (535)
Q Consensus       128 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~  197 (535)
                      ...+|..+.  ++|++|++++|.+...  ..+..+++|++|++++|.++.- ....+..+++|++|++++|.
T Consensus        19 l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             CSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC
Confidence            335554332  6788888888777433  2346777888888877766321 11224567777777777764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.99  E-value=4.3e-06  Score=73.79  Aligned_cols=121  Identities=13%  Similarity=0.071  Sum_probs=55.7

Q ss_pred             eEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEeec
Q 009416          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNT  218 (535)
Q Consensus       142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c  218 (535)
                      +.++++++.+...+ ....++|++|+++++.++.- ....+..+++|++|++++|... .+   .+..+++|+.|+++++
T Consensus        10 ~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTSVP-TGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCccCC-CCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCC
Confidence            34444444442221 12234555555555554211 1112344555555555555322 22   1334555555555555


Q ss_pred             CCccEEe----ecCCcccEEEEeeecccCeEE-ecCcccccceeEeeccCCCh
Q 009416          219 SDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED  266 (535)
Q Consensus       219 ~~l~~~~----~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~  266 (535)
                      . +..+.    ..+++|+.|+++++....++. .+..+++|+.|++++|.+..
T Consensus        87 ~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 K-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             C-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            1 11111    134555666655555212222 24556777777777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.93  E-value=1.9e-05  Score=79.39  Aligned_cols=97  Identities=13%  Similarity=0.128  Sum_probs=42.1

Q ss_pred             CCcccEEEEeecCCCcee---eeCCCCCccEEEEeecCCccEEe---ecCCcccEEEEeeecccCeEEecCcccccceeE
Q 009416          185 CPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLK  258 (535)
Q Consensus       185 ~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~  258 (535)
                      |.+|+.+.|..+  +..+   ++.++++|+.+.+...  +..+.   +...+|+.+.+...-...-...|.+|++|+.+.
T Consensus       202 ~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~  277 (401)
T 4fdw_A          202 YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVT  277 (401)
T ss_dssp             TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEE
T ss_pred             ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEE
Confidence            345555555422  3222   3444555555555432  22222   122455555553222111122355566666666


Q ss_pred             eeccCCCh----HHHHHhcCCCCCccEEEee
Q 009416          259 FDFLPIED----EWLCNGISKLPLLEYLSMT  285 (535)
Q Consensus       259 L~~~~~~~----~~l~~l~~~~~~L~~L~L~  285 (535)
                      +.++....    ......+.+|++|+.+.+.
T Consensus       278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             EESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             eCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            65443320    1112234556666666665

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.93  E-value=5.4e-06  Score=78.33  Aligned_cols=38  Identities=34%  Similarity=0.656  Sum_probs=35.0

Q ss_pred             CcCCCCCHHHHHHHHcCCChhHHH-HHhhhhhhhHHhhc
Q 009416           10 DGISTLPEPILHHILSFLPFKEVA-QTCLLSKRWKQVWQ   47 (535)
Q Consensus        10 D~is~LPdeiL~~Ils~L~~~d~~-r~s~vskrWr~lw~   47 (535)
                      ..+..||+|++.+||++||.++++ ++++|||+||.+..
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence            478899999999999999999999 99999999998743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.89  E-value=2.1e-06  Score=93.34  Aligned_cols=105  Identities=16%  Similarity=0.199  Sum_probs=62.4

Q ss_pred             hCCCcccEEEEeecCCCcee--eeCCCCCccEEEEeecCCccEEe---ecCCcccEEEEeeecccCeEEecCccccccee
Q 009416          183 SGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL  257 (535)
Q Consensus       183 ~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L  257 (535)
                      ..++.|+.|+|++|... .+  .+..+++|++|++++|. +..++   ..+++|+.|++++|....++..++++++|+.|
T Consensus       221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            34444445544444322 11  12234445555554441 11111   24567777777777633556778899999999


Q ss_pred             EeeccCCChHHHHHhcCCCCCccEEEeecCCCCc
Q 009416          258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT  291 (535)
Q Consensus       258 ~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~  291 (535)
                      +|++|.++. .+.. +.++++|+.|+|+++...+
T Consensus       299 ~L~~N~l~~-lp~~-~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          299 YFFDNMVTT-LPWE-FGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             ECCSSCCCC-CCSS-TTSCTTCCCEECTTSCCCS
T ss_pred             ECCCCCCCc-cChh-hhcCCCccEEeCCCCccCC
Confidence            999998862 2333 7788999999999876443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.83  E-value=4.4e-06  Score=77.89  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=32.7

Q ss_pred             cCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416           11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV   45 (535)
Q Consensus        11 ~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~l   45 (535)
                      .+++||+||+.+||+||+++|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            47789999999999999999999999999999964

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.75  E-value=2e-05  Score=69.03  Aligned_cols=97  Identities=19%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             ceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          116 VKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       116 l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .+.++++..  ....+|..+.  ++|++|+|++|.+...  ..+..+++|++|+|++|.++.- ....+..+++|++|+|
T Consensus        11 ~~~l~~s~n--~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGK--SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTS--CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCC--CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEEC
Confidence            344555443  3345776553  7889999999888443  4467888999999998887421 1233567888888888


Q ss_pred             eecCCCcee---eeCCCCCccEEEEeec
Q 009416          194 RSCEGLESL---DLVNLSNLKEIILVNT  218 (535)
Q Consensus       194 ~~c~~l~~~---~~~~l~~L~~L~l~~c  218 (535)
                      ++|... .+   .+..+++|+.|+++++
T Consensus        86 ~~N~l~-~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           86 NDNQLK-SIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCccC-EeCHHHhcCCCCCCEEEeCCC
Confidence            888542 22   2344556666655554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.70  E-value=2.8e-05  Score=68.40  Aligned_cols=96  Identities=16%  Similarity=0.103  Sum_probs=59.3

Q ss_pred             eEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEe
Q 009416          117 KELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR  194 (535)
Q Consensus       117 ~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~  194 (535)
                      +.+++...  ....+|..+.  ++|++|+|++|.+...  ..+..+++|++|+|++|.++.- ....+..+++|++|+|+
T Consensus        15 ~~l~~~~n--~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNI--RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSS--CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCC--CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECC
Confidence            34444433  2346776554  7888888888887433  4567888888888888877421 12234677888888888


Q ss_pred             ecCCCcee---eeCCCCCccEEEEeec
Q 009416          195 SCEGLESL---DLVNLSNLKEIILVNT  218 (535)
Q Consensus       195 ~c~~l~~~---~~~~l~~L~~L~l~~c  218 (535)
                      +|... .+   .+..+++|+.|+++++
T Consensus        90 ~N~l~-~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           90 DNHLK-SIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             SSCCC-CCCTTTTTTCTTCSEEECCSS
T ss_pred             CCccc-eeCHHHhccccCCCEEEeCCC
Confidence            87532 22   1334555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.68  E-value=1.9e-05  Score=79.34  Aligned_cols=56  Identities=7%  Similarity=0.046  Sum_probs=32.2

Q ss_pred             ccCCCceeEEEEeCccccC-CCCcccCcccceeEeeeE--eeChhHHHHHHhCCCcccEEEEe
Q 009416          135 IFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREV--CADDQAIASLISGCPLIEYLEIR  194 (535)
Q Consensus       135 l~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~--~~~~~~l~~~~~~~p~Le~L~L~  194 (535)
                      +..|.+|+.+.|...--.. ...+.+|++|+.+++..+  .++..    .+.+|++|+.+.+.
T Consensus        67 F~~c~~L~~i~lp~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           67 FQGCRKVTEIKIPSTVREIGEFAFENCSKLEIINIPDSVKMIGRC----TFSGCYALKSILLP  125 (394)
T ss_dssp             TTTCTTEEEEECCTTCCEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCTTCCCCCCC
T ss_pred             hhCCCCceEEEeCCCccCcchhHhhCCCCCcEEEeCCCceEccch----hhcccccchhhccc
Confidence            3457888888886531111 145567788888887543  11221    25567777765543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.55  E-value=2.1e-05  Score=80.50  Aligned_cols=41  Identities=24%  Similarity=0.528  Sum_probs=37.4

Q ss_pred             CCCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhcc
Q 009416            8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT   48 (535)
Q Consensus         8 ~~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~~   48 (535)
                      ..|.|+.||+|++.+||+||+.+|++++++|||+|+++...
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999986544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.46  E-value=0.00012  Score=73.66  Aligned_cols=103  Identities=12%  Similarity=0.009  Sum_probs=55.3

Q ss_pred             CceeeEEEcCcch----hhcccCcccceeEEEEeccc-chhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccc
Q 009416          319 PNLSIFKYHGDLI----SFSSNALSLSETSLCFSSHL-MVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQ  393 (535)
Q Consensus       319 p~L~~L~~~g~~~----~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~  393 (535)
                      .+|+.+.+.....    ..+.++++|+.+.+..+... ......-...+.   ++++|+ .+.+. +.++  .++..   
T Consensus       248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---~c~~L~-~l~l~-~~i~--~I~~~---  317 (401)
T 4fdw_A          248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE---GCPKLA-RFEIP-ESIR--ILGQG---  317 (401)
T ss_dssp             CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT---TCTTCC-EECCC-TTCC--EECTT---
T ss_pred             CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh---CCccCC-eEEeC-CceE--EEhhh---
Confidence            3555555533222    45677888888877533111 000001123345   677788 55554 2233  44442   


Q ss_pred             cCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeec
Q 009416          394 IQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHG  452 (535)
Q Consensus       394 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~  452 (535)
                       .+..+++|+.+.|.                   .++..+....|..| +|+++.+...
T Consensus       318 -aF~~c~~L~~l~lp-------------------~~l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          318 -LLGGNRKVTQLTIP-------------------ANVTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             -TTTTCCSCCEEEEC-------------------TTCCEECTTSSSSS-CCCEEEECCS
T ss_pred             -hhcCCCCccEEEEC-------------------ccccEEcHHhCCCC-CCCEEEEcCC
Confidence             34466788887773                   12333445577888 8888888743

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.36  E-value=0.0001  Score=75.02  Aligned_cols=39  Identities=31%  Similarity=0.489  Sum_probs=36.5

Q ss_pred             CCCCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416            7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV   45 (535)
Q Consensus         7 ~~~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~l   45 (535)
                      ...|.++.||+|++.+||+||+.+|++++++|||+|+.+
T Consensus        14 ~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             ccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            456999999999999999999999999999999999974

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.30  E-value=3.9e-05  Score=68.17  Aligned_cols=61  Identities=13%  Similarity=0.139  Sum_probs=32.0

Q ss_pred             CCCceeEEEEeCc-cccCC------CCcccCcccceeEeeeEeeChhHH---HHHHhCCCcccEEEEeecC
Q 009416          137 YVESLHVLELSYC-KLQQP------SENVKLFSLRKLALREVCADDQAI---ASLISGCPLIEYLEIRSCE  197 (535)
Q Consensus       137 ~~~~L~~L~L~~~-~~~~~------~~~~~l~~L~~L~L~~~~~~~~~l---~~~~~~~p~Le~L~L~~c~  197 (535)
                      .+++|++|+|++| .+...      ..+...++|++|+|++|.+++...   ...+...++|++|+|++|.
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3455666666665 44211      222345666677776666654432   2334445566666666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.29  E-value=0.00012  Score=64.16  Aligned_cols=82  Identities=16%  Similarity=0.093  Sum_probs=63.6

Q ss_pred             cCceEEEEeccCCCCccC-CccccCCCceeEEEEeCccccCC-C-CcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP-S-ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      .+++.|++..+...  .+ |..+..+++|++|+|++|.+... + .+..+++|++|+|++|.+..- ....+..+++|++
T Consensus        33 ~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQIT--KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCcc--ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCE
Confidence            58899998876543  44 55677889999999999998544 3 357899999999999988421 1233678999999


Q ss_pred             EEEeecCC
Q 009416          191 LEIRSCEG  198 (535)
Q Consensus       191 L~L~~c~~  198 (535)
                      |+|++|+.
T Consensus       110 L~L~~N~~  117 (174)
T 2r9u_A          110 IYLYNNPW  117 (174)
T ss_dssp             EECCSSCB
T ss_pred             EEeCCCCc
Confidence            99999964

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.29  E-value=6e-05  Score=76.60  Aligned_cols=38  Identities=37%  Similarity=0.582  Sum_probs=35.7

Q ss_pred             CCCcCCCCCHH----HHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416            8 EVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQV   45 (535)
Q Consensus         8 ~~D~is~LPde----iL~~Ils~L~~~d~~r~s~vskrWr~l   45 (535)
                      ..|.|+.||+|    |+.+||+||+.++++++++|||+|+++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            46899999999    999999999999999999999999964

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.22  E-value=0.00018  Score=62.88  Aligned_cols=82  Identities=16%  Similarity=0.095  Sum_probs=63.1

Q ss_pred             cCceEEEEeccCCCCccC-CccccCCCceeEEEEeCccccCC-C-CcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP-S-ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~~~~~-~-~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      .+++.|++..+...  .+ |..+..+++|++|+|++|.+... + .+..+++|++|+|++|.+..- ....+..+++|++
T Consensus        30 ~~l~~L~L~~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQIT--KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCC--ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence            57888888876533  45 45577889999999999998543 3 357899999999999988431 1233678999999


Q ss_pred             EEEeecCC
Q 009416          191 LEIRSCEG  198 (535)
Q Consensus       191 L~L~~c~~  198 (535)
                      |+|++|+.
T Consensus       107 L~L~~N~~  114 (170)
T 3g39_A          107 IWLLNNPW  114 (170)
T ss_dssp             EECCSSCB
T ss_pred             EEeCCCCC
Confidence            99999864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.04  E-value=0.00031  Score=68.99  Aligned_cols=69  Identities=17%  Similarity=0.050  Sum_probs=52.7

Q ss_pred             CccCCccccCCCceeEEEEeC-ccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCC
Q 009416          128 RRNLPEIIFYVESLHVLELSY-CKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG  198 (535)
Q Consensus       128 ~~~lp~~l~~~~~L~~L~L~~-~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~  198 (535)
                      ...+|. +..+++|++|+|++ |.+...  ..+..+++|+.|+|++|.++.- .+..+..+++|++|+|++|..
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc
Confidence            456888 88889999999996 877432  4577899999999999987432 223467889999999998864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.85  E-value=0.00016  Score=64.13  Aligned_cols=99  Identities=12%  Similarity=0.043  Sum_probs=66.0

Q ss_pred             ChhhHHHHHHHHHh--cCceEEEEecc-CCCCc---cCCccccCCCceeEEEEeCccccCC------CCcccCcccceeE
Q 009416          100 NASLAGRCLGLAIE--SEVKELVLVHW-RSERR---NLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLA  167 (535)
Q Consensus       100 ~~~~~~~wl~~~~~--~~l~~L~L~~~-~~~~~---~lp~~l~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~  167 (535)
                      ...++..++..+..  +.+++|+|..+ .....   .+...+...++|++|+|++|.+...      ..+...++|++|+
T Consensus        20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~   99 (185)
T 1io0_A           20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN   99 (185)
T ss_dssp             CCCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred             CccHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEE
Confidence            34455666666554  46888888776 43221   2334455678999999999987432      2234557899999


Q ss_pred             eeeEeeChhHHH---HHHhCCCcccEEEE--eecCC
Q 009416          168 LREVCADDQAIA---SLISGCPLIEYLEI--RSCEG  198 (535)
Q Consensus       168 L~~~~~~~~~l~---~~~~~~p~Le~L~L--~~c~~  198 (535)
                      |++|.+++....   ..+..+++|++|+|  ++|..
T Consensus       100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i  135 (185)
T 1io0_A          100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPL  135 (185)
T ss_dssp             CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence            999998766543   34556788999999  65653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.80  E-value=0.0011  Score=66.40  Aligned_cols=13  Identities=23%  Similarity=0.140  Sum_probs=7.8

Q ss_pred             hcccCcccceeEE
Q 009416          333 FSSNALSLSETSL  345 (535)
Q Consensus       333 ~~~~l~~L~~L~l  345 (535)
                      .+.++++|+.+.+
T Consensus       338 aF~~c~~L~~i~l  350 (394)
T 4fs7_A          338 SFRGCTSLSNINF  350 (394)
T ss_dssp             TTTTCTTCCEECC
T ss_pred             hccCCCCCCEEEE
Confidence            4556666666655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.32  E-value=0.0016  Score=63.87  Aligned_cols=74  Identities=14%  Similarity=0.011  Sum_probs=49.3

Q ss_pred             EEEEeCc-cccCCCCcccCcccceeEeee-EeeChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEee
Q 009416          143 VLELSYC-KLQQPSENVKLFSLRKLALRE-VCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVN  217 (535)
Q Consensus       143 ~L~L~~~-~~~~~~~~~~l~~L~~L~L~~-~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~  217 (535)
                      .++.+++ .+...|.+..+++|++|+|++ |.+..- ....+.++++|++|+|++|. +..+   .+.++++|+.|++++
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence            3566776 664333388888999999986 776321 12336788999999999885 4333   345567777777666


Q ss_pred             c
Q 009416          218 T  218 (535)
Q Consensus       218 c  218 (535)
                      +
T Consensus        90 N   90 (347)
T 2ifg_A           90 N   90 (347)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.32  E-value=0.0013  Score=61.64  Aligned_cols=78  Identities=26%  Similarity=0.235  Sum_probs=37.2

Q ss_pred             cCceEEEEeccCCCCc-cCCccccCCCceeEEEEeCccccCCCCcccCc--ccceeEeeeEeeCh------hHHHHHHhC
Q 009416          114 SEVKELVLVHWRSERR-NLPEIIFYVESLHVLELSYCKLQQPSENVKLF--SLRKLALREVCADD------QAIASLISG  184 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~--~L~~L~L~~~~~~~------~~l~~~~~~  184 (535)
                      ++|+.|+|+.+..... .+|..+..+++|+.|+|++|.+.....+..+.  +|++|+|++|.+..      .....++..
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~  249 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER  249 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence            4566666655433221 23344445566666666666554332233333  56666666555522      112234455


Q ss_pred             CCcccEE
Q 009416          185 CPLIEYL  191 (535)
Q Consensus       185 ~p~Le~L  191 (535)
                      +|+|+.|
T Consensus       250 ~P~L~~L  256 (267)
T 3rw6_A          250 FPKLLRL  256 (267)
T ss_dssp             CTTCCEE
T ss_pred             CcccCeE
Confidence            5555555

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.27  E-value=0.0038  Score=62.38  Aligned_cols=84  Identities=5%  Similarity=0.029  Sum_probs=43.7

Q ss_pred             hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEee
Q 009416          332 SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRT  411 (535)
Q Consensus       332 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~  411 (535)
                      ..+.++++|+.+.+... ...    .-...+.   ++++|+ .+.|. ..++  .+++.    .+..+.+|+.+.|-   
T Consensus       282 ~aF~~c~~L~~i~l~~~-i~~----I~~~aF~---~c~~L~-~i~lp-~~v~--~I~~~----aF~~C~~L~~i~ip---  342 (394)
T 4gt6_A          282 GAFMNCPALQDIEFSSR-ITE----LPESVFA---GCISLK-SIDIP-EGIT--QILDD----AFAGCEQLERIAIP---  342 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCE----ECTTTTT---TCTTCC-EEECC-TTCC--EECTT----TTTTCTTCCEEEEC---
T ss_pred             cccccccccccccCCCc-ccc----cCceeec---CCCCcC-EEEeC-Cccc--EehHh----HhhCCCCCCEEEEC---
Confidence            34556677777666211 000    0012234   567777 44442 1122  33332    34466778877762   


Q ss_pred             cCCccccchhcccccccchhHHhhhhhccCcccceEEEe
Q 009416          412 DSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIE  450 (535)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~  450 (535)
                                      .++..+-...|..|++|+++.+.
T Consensus       343 ----------------~sv~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          343 ----------------SSVTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             ----------------TTCCBCCGGGGTTCTTCCEEEES
T ss_pred             ----------------cccCEEhHhHhhCCCCCCEEEEC
Confidence                            12333445577888888888776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.12  E-value=0.0012  Score=61.77  Aligned_cols=62  Identities=23%  Similarity=0.153  Sum_probs=40.4

Q ss_pred             CCCceeEEEEeCccccCC----CCcccCcccceeEeeeEeeCh-hHHHHHHhCCCcccEEEEeecCCCc
Q 009416          137 YVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADD-QAIASLISGCPLIEYLEIRSCEGLE  200 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~-~~l~~~~~~~p~Le~L~L~~c~~l~  200 (535)
                      .+++|+.|+|++|.+...    ..+..+++|+.|+|++|.+.+ ..+.. +..+ +|++|.|++|+..+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcCcc
Confidence            357888888888877543    223478888888888887743 23332 2333 78888888877543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.52  E-value=0.0067  Score=60.13  Aligned_cols=84  Identities=5%  Similarity=-0.037  Sum_probs=42.9

Q ss_pred             hhcccCcccceeEEEEe-cccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEEEe
Q 009416          332 SFSSNALSLSETSLCFS-SHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYSVR  410 (535)
Q Consensus       332 ~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~  410 (535)
                      ..+.++.+|+.+.+... ...+      ...+.   ++++|+ .+.+..+.++  .+++.    .+..+.+|+.+.|-  
T Consensus       257 ~aF~~~~~l~~i~l~~~i~~i~------~~aF~---~c~~L~-~i~l~~~~i~--~I~~~----aF~~c~~L~~i~lp--  318 (379)
T 4h09_A          257 FLLQNCTALKTLNFYAKVKTVP------YLLCS---GCSNLT-KVVMDNSAIE--TLEPR----VFMDCVKLSSVTLP--  318 (379)
T ss_dssp             TTTTTCTTCCEEEECCCCSEEC------TTTTT---TCTTCC-EEEECCTTCC--EECTT----TTTTCTTCCEEECC--
T ss_pred             cccceeehhccccccccceecc------ccccc---cccccc-cccccccccc--eehhh----hhcCCCCCCEEEcC--
Confidence            34556667777666322 0000      11224   566777 4444322233  34432    34456677776662  


Q ss_pred             ecCCccccchhcccccccchhHHhhhhhccCcccceEEEe
Q 009416          411 TDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIE  450 (535)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~  450 (535)
                                       .++..+-...|..|++|+++.+.
T Consensus       319 -----------------~~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          319 -----------------TALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             -----------------TTCCEECTTTTTTCTTCCCCCCC
T ss_pred             -----------------ccccEEHHHHhhCCCCCCEEEEC
Confidence                             12333444467777888877764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.48  E-value=0.048  Score=54.26  Aligned_cols=119  Identities=18%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             CcccCcccceeEeeeEee--ChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEeecCCccEEe---e-
Q 009416          156 ENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE---I-  226 (535)
Q Consensus       156 ~~~~l~~L~~L~L~~~~~--~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c~~l~~~~---~-  226 (535)
                      .+..+..|+.+.+.....  +.    ..+.+|+.|+.+.+..  .+..+   .+.++.+|+.+.+..  .+..+.   + 
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~  331 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFA  331 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT
T ss_pred             eeeecccccEEecccccceecC----cccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhh
Confidence            345567777777654322  22    1245677777777642  23333   455567777777653  233332   2 


Q ss_pred             cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeec
Q 009416          227 KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (535)
Q Consensus       227 ~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~  286 (535)
                      +|.+|+++.+...-...-...|.+|.+|+.+.+.++..   .. ..+..+.+|+.+.+..
T Consensus       332 ~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~---~~-~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          332 GCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRS---QW-NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHH---HH-HTCBCCCCC-------
T ss_pred             CCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCcee---eh-hhhhccCCCCEEEeCC
Confidence            56777777775433111133578899999998876532   12 2356677888887653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.58  E-value=0.4  Score=42.23  Aligned_cols=38  Identities=11%  Similarity=0.010  Sum_probs=24.0

Q ss_pred             cccccceeEeeccCCChHHHHHh---cCCCCCccEEEeecC
Q 009416          250 SCGNLKCLKFDFLPIEDEWLCNG---ISKLPLLEYLSMTKC  287 (535)
Q Consensus       250 ~l~~L~~L~L~~~~~~~~~l~~l---~~~~~~L~~L~L~~c  287 (535)
                      .-+.|++|+|+.|.+.+.....+   +..-+.|+.|+|+++
T Consensus        96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            34567778888888877654433   334456777777653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=84.14  E-value=0.17  Score=44.63  Aligned_cols=97  Identities=18%  Similarity=0.167  Sum_probs=56.1

Q ss_pred             ChhhHHHHHHHHHh--cCceEEEEecc-CCCC---ccCCccccCCCceeEEEEeCccccCC------CCcccCcccceeE
Q 009416          100 NASLAGRCLGLAIE--SEVKELVLVHW-RSER---RNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLA  167 (535)
Q Consensus       100 ~~~~~~~wl~~~~~--~~l~~L~L~~~-~~~~---~~lp~~l~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~  167 (535)
                      ...+++..+.....  +.+++|+|... ....   ..+-..+..-++|+.|+|++|.+...      ..+..-+.|++|+
T Consensus        25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~  104 (197)
T 1pgv_A           25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN  104 (197)
T ss_dssp             --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred             CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence            34566777766655  35788877643 2111   11222344457788888888876422      1122346788888


Q ss_pred             eeeEeeChhHHHHH---HhCCCcccEEEEeec
Q 009416          168 LREVCADDQAIASL---ISGCPLIEYLEIRSC  196 (535)
Q Consensus       168 L~~~~~~~~~l~~~---~~~~p~Le~L~L~~c  196 (535)
                      |++|.+++.....+   +..-+.|++|+|+++
T Consensus       105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            88888866554443   333456777777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=83.46  E-value=0.88  Score=44.58  Aligned_cols=13  Identities=23%  Similarity=0.074  Sum_probs=7.2

Q ss_pred             cCCCCCccEEEee
Q 009416          273 ISKLPLLEYLSMT  285 (535)
Q Consensus       273 ~~~~~~L~~L~L~  285 (535)
                      +.+|++|+.+.+.
T Consensus       282 F~~c~~L~~i~l~  294 (379)
T 4h09_A          282 CSGCSNLTKVVMD  294 (379)
T ss_dssp             TTTCTTCCEEEEC
T ss_pred             ccccccccccccc
Confidence            4455566665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	535
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-06
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	4e-06
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	6e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-04

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 7  LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
           + D IS LP+ +  ++LSFL  K++ Q     + W+ +
Sbjct: 14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 11/46 (23%), Positives = 26/46 (56%)

Query: 7  LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDV 52
          L+ D I++LP  I   I ++L F+++  +  +S+ W ++ +    +
Sbjct: 1  LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 6e-05
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 6  VLEVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQVWQ 47
          +L+ D I+ LP      I  +ILS+L  K +    L+ K W +V  
Sbjct: 5  MLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTS 50

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 13 STLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45
           +LP+ +L  I S L   E+ +   + KRW ++
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	535
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.47
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.43
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.25
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.24
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.21
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.19
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.16
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.15
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.11
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.08
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.07
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.07
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.02
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.96
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.73
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.71
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.7
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.56
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.33
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.29
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.2
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.12
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.07
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.05
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.1
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.93
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.11
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.82
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.48
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.64

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.6e-15  Score=139.38  Aligned_cols=201  Identities=15%  Similarity=0.161  Sum_probs=105.1

Q ss_pred             CCceeEEEEeCccccCC---CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceee----eCCCCCc
Q 009416          138 VESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD----LVNLSNL  210 (535)
Q Consensus       138 ~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~----~~~l~~L  210 (535)
                      ..+|++|++++|.+...   ..+..+++|++|+++++.+++..+.. ++.+++|++|++++|..++...    ..++++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34555555555544211   22344555555555555544444433 3445555555555554443211    1223444


Q ss_pred             cEEEEeecCCccEEeecCCcccEEEEeeecccCeEEec-CcccccceeEeecc--CCChHHHHHhcCCCCCccEEEeecC
Q 009416          211 KEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNV-SSCGNLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       211 ~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~L~~~--~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      ++|++++|..+..                  ......+ ..+++|+.|+++++  .+++..+..+..++|+|++|++++|
T Consensus       124 ~~L~ls~c~~~~~------------------~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         124 DELNLSWCFDFTE------------------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             CEEECCCCTTCCH------------------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             ccccccccccccc------------------ccchhhhcccccccchhhhcccccccccccccccccccccccccccccc
Confidence            4444444432211                  0111112 22456777777643  4666777777777888888888888


Q ss_pred             CCCccccc----CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEEEecccchhhHhHHHHHh
Q 009416          288 HKLTSVRI----SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFE  363 (535)
Q Consensus       288 ~~l~~l~~----~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~  363 (535)
                      ..++.-..    .+++|++|++++|.++..-..               ..+.++|+|+.|++..+....    .+..+.+
T Consensus       186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l---------------~~L~~~~~L~~L~l~~~~~d~----~l~~l~~  246 (284)
T d2astb2         186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL---------------LELGEIPTLKTLQVFGIVPDG----TLQLLKE  246 (284)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG---------------GGGGGCTTCCEEECTTSSCTT----CHHHHHH
T ss_pred             cCCCchhhhhhcccCcCCEEECCCCCCCChHHH---------------HHHhcCCCCCEEeeeCCCCHH----HHHHHHH
Confidence            76653322    356778888877766532111               134467778887775441111    3455555


Q ss_pred             hhhcccccceeEEEEeeccc
Q 009416          364 ILAMFQKFSKVLNLQCREGE  383 (535)
Q Consensus       364 ~~~~l~~L~~~L~L~~~~l~  383 (535)
                         .+|+|+    +.|+.++
T Consensus       247 ---~lp~L~----i~~~~ls  259 (284)
T d2astb2         247 ---ALPHLQ----INCSHFT  259 (284)
T ss_dssp             ---HSTTSE----ESCCCSC
T ss_pred             ---hCcccc----ccCccCC
Confidence               566655    3555555

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=1.2e-13  Score=136.87  Aligned_cols=265  Identities=17%  Similarity=0.120  Sum_probs=151.9

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .++++|++..++..  .+ ..+..+++|++|+|++|.+...+.+.++++|++|++++|.+.+-  .. ++.+++|+.|++
T Consensus        44 ~~l~~L~l~~~~I~--~l-~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i--~~-l~~l~~L~~L~~  117 (384)
T d2omza2          44 DQVTTLQADRLGIK--SI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTL  117 (384)
T ss_dssp             TTCCEEECCSSCCC--CC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCC--Cc-cccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccc--cc-cccccccccccc
Confidence            47888888765433  33 24566788888888888876555677888888888888877431  11 567888888887


Q ss_pred             eecCCCceee-----------------------------------------------------------------eCCCC
Q 009416          194 RSCEGLESLD-----------------------------------------------------------------LVNLS  208 (535)
Q Consensus       194 ~~c~~l~~~~-----------------------------------------------------------------~~~l~  208 (535)
                      .++.......                                                                 ...++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            7654321000                                                                 11123


Q ss_pred             CccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeec
Q 009416          209 NLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK  286 (535)
Q Consensus       209 ~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~  286 (535)
                      +++.+.++++. +..+.  ..+++|+.|++.++.... ...+..+++|+.|+++++.+++..  . +..+++|+.|++++
T Consensus       198 ~~~~l~l~~n~-i~~~~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~~L~~L~l~~  272 (384)
T d2omza2         198 NLESLIATNNQ-ISDITPLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLA--P-LSGLTKLTELKLGA  272 (384)
T ss_dssp             TCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCS
T ss_pred             ccceeeccCCc-cCCCCcccccCCCCEEECCCCCCCC-cchhhcccccchhccccCccCCCC--c-ccccccCCEeeccC
Confidence            44444444331 11111  134555666665554111 113455666666666666555422  1 44566666666665


Q ss_pred             CCCCccccc-CCCCCceEEeccCcccccc--cccCCceeeEEEcCcch---hhcccCcccceeEEEEecccchhhHhHHH
Q 009416          287 CHKLTSVRI-SSPCLKTLILECCDKLIQV--EIETPNLSIFKYHGDLI---SFSSNALSLSETSLCFSSHLMVNIEWVVE  360 (535)
Q Consensus       287 c~~l~~l~~-~~~~L~~L~l~~c~~L~~l--~~~~p~L~~L~~~g~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  360 (535)
                      +......+. ....++.+.+..+. +..+  ....++++.++++++..   ..+.++++|++|+++.+....     ++ 
T Consensus       273 ~~l~~~~~~~~~~~l~~l~~~~n~-l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~-----l~-  345 (384)
T d2omza2         273 NQISNISPLAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD-----VS-  345 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC-----CG-
T ss_pred             cccCCCCccccccccccccccccc-cccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC-----Ch-
Confidence            432211111 23455555554432 1111  23456788888877765   347788889998887653322     22 


Q ss_pred             HHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416          361 YFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS  408 (535)
Q Consensus       361 ~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~  408 (535)
                      .+.   ++++|+ .|.++.+.++  .++      .+..+++|+.|+|+
T Consensus       346 ~l~---~l~~L~-~L~l~~N~l~--~l~------~l~~l~~L~~L~L~  381 (384)
T d2omza2         346 SLA---NLTNIN-WLSAGHNQIS--DLT------PLANLTRITQLGLN  381 (384)
T ss_dssp             GGG---GCTTCC-EEECCSSCCC--BCG------GGTTCTTCSEEECC
T ss_pred             hHc---CCCCCC-EEECCCCcCC--CCh------hhccCCCCCEeeCC
Confidence            245   788899 8888877666  333      24467788888875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=1.5e-13  Score=136.11  Aligned_cols=245  Identities=16%  Similarity=0.140  Sum_probs=141.4

Q ss_pred             CCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEe
Q 009416          137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV  216 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~  216 (535)
                      .+.+|++|+++++.+.....+..+++|++|++++|.+++-  .. ++.+++|++|++++|....-..+..+++|+.|++.
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l--~~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~  118 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  118 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCC--cc-ccCCccccccccccccccccccccccccccccccc
Confidence            3578999999999986656788999999999999988542  22 78899999999999976543467888999999987


Q ss_pred             ecCC--ccEEeecCCcccEEEEeeec------------------------------------------ccCeEEecCccc
Q 009416          217 NTSD--IKRVEIKTSNVNALAIHQTY------------------------------------------LFPIEVNVSSCG  252 (535)
Q Consensus       217 ~c~~--l~~~~~~~~~L~~L~l~~~~------------------------------------------~~~~~~~~~~l~  252 (535)
                      ++..  +... .....+.......+.                                          ..........++
T Consensus       119 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         119 NNQITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             SSCCCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            7621  1000 001111111110000                                          000112244566


Q ss_pred             ccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc--CCCCCceEEeccCccccccc--ccCCceeeEEEcC
Q 009416          253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQVE--IETPNLSIFKYHG  328 (535)
Q Consensus       253 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~l~--~~~p~L~~L~~~g  328 (535)
                      +++.+.++++.+++...   ...+++|++|++.++. ++.++.  ..++|+.|++.++. +..+.  ...++|+.+.+++
T Consensus       198 ~~~~l~l~~n~i~~~~~---~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~  272 (384)
T d2omza2         198 NLESLIATNNQISDITP---LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGA  272 (384)
T ss_dssp             TCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCS
T ss_pred             ccceeeccCCccCCCCc---ccccCCCCEEECCCCC-CCCcchhhcccccchhccccCc-cCCCCcccccccCCEeeccC
Confidence            77777777776655322   2346677888777753 222322  44677777776653 22221  2446777777766


Q ss_pred             cch---hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccccCCCCcccceee
Q 009416          329 DLI---SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKL  405 (535)
Q Consensus       329 ~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L  405 (535)
                      ...   ..+.+++.++.+.+..+....     +.. +.   .+++++ .|.++.+.++  .++      .+..+++|++|
T Consensus       273 ~~l~~~~~~~~~~~l~~l~~~~n~l~~-----~~~-~~---~~~~l~-~L~ls~n~l~--~l~------~l~~l~~L~~L  334 (384)
T d2omza2         273 NQISNISPLAGLTALTNLELNENQLED-----ISP-IS---NLKNLT-YLTLYFNNIS--DIS------PVSSLTKLQRL  334 (384)
T ss_dssp             SCCCCCGGGTTCTTCSEEECCSSCCSC-----CGG-GG---GCTTCS-EEECCSSCCS--CCG------GGGGCTTCCEE
T ss_pred             cccCCCCcccccccccccccccccccc-----ccc-cc---hhcccC-eEECCCCCCC--CCc------ccccCCCCCEE
Confidence            554   344555556665553332111     111 23   456666 5555544444  121      12345566666


Q ss_pred             EEE
Q 009416          406 NYS  408 (535)
Q Consensus       406 ~l~  408 (535)
                      +++
T Consensus       335 ~L~  337 (384)
T d2omza2         335 FFA  337 (384)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-15  Score=144.95  Aligned_cols=173  Identities=18%  Similarity=0.208  Sum_probs=119.5

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEe-eChhHHHHHHhCCCcccE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIEY  190 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~~~~~~p~Le~  190 (535)
                      .++++|+++.+......++..+..|++|++|+|++|.+...  ..++.+++|++|+++++. +++..+..++.+||+|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            47899998876555445666677899999999999976432  456788999999999964 588888888889999999


Q ss_pred             EEEeecCCCcee----ee-CCCCCccEEEEeec-CCccE-----EeecCCcccEEEEeeec--ccCeEEecCccccccee
Q 009416          191 LEIRSCEGLESL----DL-VNLSNLKEIILVNT-SDIKR-----VEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCL  257 (535)
Q Consensus       191 L~L~~c~~l~~~----~~-~~l~~L~~L~l~~c-~~l~~-----~~~~~~~L~~L~l~~~~--~~~~~~~~~~l~~L~~L  257 (535)
                      |++++|..+...    .+ ..+++|+.|++.+| ..+..     +...+|+|++|+++++.  .......+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            999999876432    12 22478899988876 22221     22256777777776654  22223345566677777


Q ss_pred             Eeecc-CCChHHHHHhcCCCCCccEEEeecC
Q 009416          258 KFDFL-PIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       258 ~L~~~-~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      +++++ .+++..+.. +..+|+|+.|++.+|
T Consensus       206 ~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            77653 455555544 455677777777665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.25  E-value=5.5e-13  Score=128.26  Aligned_cols=103  Identities=19%  Similarity=0.199  Sum_probs=73.1

Q ss_pred             CceEEEEeccCCCC-ccCCccccCCCceeEEEEeC-ccc--cCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccE
Q 009416          115 EVKELVLVHWRSER-RNLPEIIFYVESLHVLELSY-CKL--QQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY  190 (535)
Q Consensus       115 ~l~~L~L~~~~~~~-~~lp~~l~~~~~L~~L~L~~-~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~  190 (535)
                      +|.+|+|......+ ..+|..++++++|++|+|++ +.+  ..|+.++++++|++|+|++|.+... ....+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhcc
Confidence            57888887754433 36889999999999999987 455  3556788999999999999877321 1223567888899


Q ss_pred             EEEeecCCCcee--eeCCCCCccEEEEeec
Q 009416          191 LEIRSCEGLESL--DLVNLSNLKEIILVNT  218 (535)
Q Consensus       191 L~L~~c~~l~~~--~~~~l~~L~~L~l~~c  218 (535)
                      +++..|.....+  .+.++++|+.++++++
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccCchhhccCcccceeecccc
Confidence            888887654333  3555667777766665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.24  E-value=1.3e-12  Score=125.53  Aligned_cols=233  Identities=15%  Similarity=0.047  Sum_probs=131.6

Q ss_pred             CceeEEEEeCcccc----CCCCcccCcccceeEeeeE-eeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCcc
Q 009416          139 ESLHVLELSYCKLQ----QPSENVKLFSLRKLALREV-CADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLK  211 (535)
Q Consensus       139 ~~L~~L~L~~~~~~----~~~~~~~l~~L~~L~L~~~-~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~  211 (535)
                      .++++|+|+++.+.    .|+.++++++|++|+|+++ .+.+ .++..++.+++|++|+|++|...+..  .+..+++|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc-ccccccccccccchhhhccccccccccccccchhhhc
Confidence            46999999998774    4578899999999999874 4432 23444778999999999998654322  234455666


Q ss_pred             EEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCc-cEEEeecCCCC
Q 009416          212 EIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLL-EYLSMTKCHKL  290 (535)
Q Consensus       212 ~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L-~~L~L~~c~~l  290 (535)
                      .+++..+..                    ...++..+.+++.|+.++++++.+.+..+.. +..++.+ +.+.+.++.-.
T Consensus       129 ~l~l~~N~~--------------------~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         129 TLDFSYNAL--------------------SGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EEECCSSEE--------------------ESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE
T ss_pred             ccccccccc--------------------cccCchhhccCcccceeeccccccccccccc-ccccccccccccccccccc
Confidence            666555411                    2222334455555555555555544433222 2233332 44444433211


Q ss_pred             cccccCC--CCCceEEeccCccccc---ccccCCceeeEEEcCcch----hhcccCcccceeEEEEecccchhhHhHHHH
Q 009416          291 TSVRISS--PCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSSHLMVNIEWVVEY  361 (535)
Q Consensus       291 ~~l~~~~--~~L~~L~l~~c~~L~~---l~~~~p~L~~L~~~g~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  361 (535)
                      +..+...  .....+++..+.....   .....++|+.+.+.+...    ..+..+++|+.|+++.+...+    .+++.
T Consensus       188 ~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g----~iP~~  263 (313)
T d1ogqa_         188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG----TLPQG  263 (313)
T ss_dssp             EECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE----CCCGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecc----cCChH
Confidence            1111111  1222333333322111   112334555555554443    345667888888887665444    45666


Q ss_pred             HhhhhcccccceeEEEEeeccccccccccccccCCCCcccceeeEEE
Q 009416          362 FEILAMFQKFSKVLNLQCREGENVIVPQELRQIQSPPLTSVKKLNYS  408 (535)
Q Consensus       362 l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~  408 (535)
                      ++   ++++|+ .|.|+.|.++ +.+|+      ...+++|+.+++.
T Consensus       264 l~---~L~~L~-~L~Ls~N~l~-g~iP~------~~~L~~L~~l~l~  299 (313)
T d1ogqa_         264 LT---QLKFLH-SLNVSFNNLC-GEIPQ------GGNLQRFDVSAYA  299 (313)
T ss_dssp             GG---GCTTCC-EEECCSSEEE-EECCC------STTGGGSCGGGTC
T ss_pred             Hh---CCCCCC-EEECcCCccc-ccCCC------cccCCCCCHHHhC
Confidence            67   789999 8888877777 66664      3456667666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=1.8e-11  Score=111.68  Aligned_cols=164  Identities=20%  Similarity=0.184  Sum_probs=88.2

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .+++.|++..++..  .++ .+..+++|++|++++|.+.....+..+++|++++++++.++.  +.. +..+++|+.+.+
T Consensus        41 ~~L~~L~l~~~~i~--~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCC--cch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-cccccccccccc
Confidence            46777777665432  443 366677778888877777554556777777777777776532  122 456777777777


Q ss_pred             eecCCCceeeeCCCCCccEEEEeecCCccEEe-ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHh
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG  272 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l  272 (535)
                      .+|.......+...+.++.+.+.++....... ..+++|+.|.+.++.... ...++++++|+.|+++++.+.+-  .. 
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~l~~l~~L~~L~Ls~n~l~~l--~~-  190 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKADDNKISDI--SP-  190 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--GG-
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccccccc-chhhcccccceecccCCCccCCC--hh-
Confidence            77655433344445566666665542211111 144555555555444111 11244455555555555444331  11 


Q ss_pred             cCCCCCccEEEeecC
Q 009416          273 ISKLPLLEYLSMTKC  287 (535)
Q Consensus       273 ~~~~~~L~~L~L~~c  287 (535)
                      +.++++|++|++++|
T Consensus       191 l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         191 LASLPNLIEVHLKNN  205 (227)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             hcCCCCCCEEECcCC
Confidence            334445555555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=2.8e-11  Score=110.29  Aligned_cols=184  Identities=18%  Similarity=0.147  Sum_probs=129.8

Q ss_pred             cCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee-eeCCCCCccEEE
Q 009416          136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVNLSNLKEII  214 (535)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-~~~~l~~L~~L~  214 (535)
                      ..+.+|++|++.+|.+.....+..+++|++|++++|.+..-.  . +..+++|+.+.+.+|... .+ .+..+++|+.+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~~-~i~~l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCEEE
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc--c-cccccccccccccccccc-ccccccccccccccc
Confidence            346899999999999866567889999999999999884321  1 688999999999988643 33 577789999999


Q ss_pred             EeecCCccEEee-cCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccc
Q 009416          215 LVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV  293 (535)
Q Consensus       215 l~~c~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l  293 (535)
                      +++|.......+ ..+.+..+.+.++.... ...+.++++|+.|.++++.+.+..  . +.++++|+.|+++++ .++.+
T Consensus       114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~Ls~n-~l~~l  188 (227)
T d1h6ua2         114 LTSTQITDVTPLAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDN-KISDI  188 (227)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSS-CCCCC
T ss_pred             cccccccccchhccccchhhhhchhhhhch-hhhhccccccccccccccccccch--h-hcccccceecccCCC-ccCCC
Confidence            988843332222 56778888877665221 234677888999999888776432  1 567889999999886 34444


Q ss_pred             cc--CCCCCceEEeccCcccccccccCCceeeEEEcCcchhhcccCcccceeEEE
Q 009416          294 RI--SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLC  346 (535)
Q Consensus       294 ~~--~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~  346 (535)
                      +.  .+++|++|++++| ++..+.                 .++++++|+.|+++
T Consensus       189 ~~l~~l~~L~~L~Ls~N-~lt~i~-----------------~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         189 SPLASLPNLIEVHLKNN-QISDVS-----------------PLANTSNLFIVTLT  225 (227)
T ss_dssp             GGGGGCTTCCEEECTTS-CCCBCG-----------------GGTTCTTCCEEEEE
T ss_pred             hhhcCCCCCCEEECcCC-cCCCCc-----------------ccccCCCCCEEEee
Confidence            32  3466777777665 343332                 34567777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=3.2e-11  Score=107.48  Aligned_cols=143  Identities=17%  Similarity=0.171  Sum_probs=69.6

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      .++++|.+..++..  .++ .+..+++|++|++++|.+...+.+.++++|++|+++++.+..-  .. +++++.|+.|++
T Consensus        40 ~~l~~L~l~~~~i~--~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~--~~-l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIK--SID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCC--Ccc-ccccCCCcCcCccccccccCcccccCCcccccccccccccccc--cc-cccccccccccc
Confidence            45666665554322  222 2444566666666666554444455666666666665554211  11 445566666666


Q ss_pred             eecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhc
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI  273 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~  273 (535)
                      .+|.......+..+++|+.|++++|                     .... ...+..+++|+.|++.++.+++-  .. +
T Consensus       114 ~~~~~~~~~~~~~l~~L~~L~l~~n---------------------~l~~-~~~l~~~~~L~~L~l~~n~l~~l--~~-l  168 (199)
T d2omxa2         114 FNNQITDIDPLKNLTNLNRLELSSN---------------------TISD-ISALSGLTSLQQLNFSSNQVTDL--KP-L  168 (199)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSS---------------------CCCC-CGGGTTCTTCSEEECCSSCCCCC--GG-G
T ss_pred             cccccccccccchhhhhHHhhhhhh---------------------hhcc-cccccccccccccccccccccCC--cc-c
Confidence            5554433223344444554444443                     2111 11244455555555555554432  11 3


Q ss_pred             CCCCCccEEEeecC
Q 009416          274 SKLPLLEYLSMTKC  287 (535)
Q Consensus       274 ~~~~~L~~L~L~~c  287 (535)
                      .++++|++|+++++
T Consensus       169 ~~l~~L~~L~ls~N  182 (199)
T d2omxa2         169 ANLTTLERLDISSN  182 (199)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCC
Confidence            45556666666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.15  E-value=4e-11  Score=114.48  Aligned_cols=247  Identities=13%  Similarity=0.023  Sum_probs=132.6

Q ss_pred             CCccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeee
Q 009416          127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDL  204 (535)
Q Consensus       127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~  204 (535)
                      .-..+|..+.  +++++|+|++|.+...  ..+.++++|++|+++++.+..-. +..+..++.|+.|++++|. ++.+..
T Consensus        21 ~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~-~~~f~~l~~L~~L~l~~n~-l~~l~~   96 (305)
T d1xkua_          21 GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ-LKELPE   96 (305)
T ss_dssp             CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC-CSBCCS
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccc-hhhhhCCCccCEecccCCc-cCcCcc
Confidence            3456777654  6799999999988433  35678899999999988773211 2336788999999998885 444433


Q ss_pred             CCCCCccEEEEeecCCccEEe---e-cCCcccEEEEeeec---ccCeEEecCcccccceeEeeccCCChHHHHHhcCCCC
Q 009416          205 VNLSNLKEIILVNTSDIKRVE---I-KTSNVNALAIHQTY---LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP  277 (535)
Q Consensus       205 ~~l~~L~~L~l~~c~~l~~~~---~-~~~~L~~L~l~~~~---~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~  277 (535)
                      ...+.++.|.+..+ .+..+.   . ..+.+..+....+.   .......+..+++|+.++++++.+....    ...++
T Consensus        97 ~~~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~----~~~~~  171 (305)
T d1xkua_          97 KMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPP  171 (305)
T ss_dssp             SCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC----SSCCT
T ss_pred             chhhhhhhhhcccc-chhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC----cccCC
Confidence            33467777776655 111111   1 23344444444332   1111123444555666666555443210    12245


Q ss_pred             CccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccc
Q 009416          278 LLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLM  352 (535)
Q Consensus       278 ~L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~  352 (535)
                      +|+.|++.++......+..                  ....++++.|.++++..     ..+.++++|++|+++.+... 
T Consensus       172 ~L~~L~l~~n~~~~~~~~~------------------~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-  232 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAAS------------------LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-  232 (305)
T ss_dssp             TCSEEECTTSCCCEECTGG------------------GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred             ccCEEECCCCcCCCCChhH------------------hhccccccccccccccccccccccccccccceeeeccccccc-
Confidence            5666666554332222211                  01223334444433322     34556777777777544222 


Q ss_pred             hhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccc--cCCCCcccceeeEEEEee
Q 009416          353 VNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQ--IQSPPLTSVKKLNYSVRT  411 (535)
Q Consensus       353 ~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~--~~~~~l~~L~~L~l~~~~  411 (535)
                          .++..+.   ++++|+ +|.++.+.++  .++...|.  .......+|+.|+|+..+
T Consensus       233 ----~lp~~l~---~l~~L~-~L~Ls~N~i~--~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         233 ----KVPGGLA---DHKYIQ-VVYLHNNNIS--AIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             ----SCCTTTT---TCSSCC-EEECCSSCCC--CCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ----ccccccc---cccCCC-EEECCCCccC--ccChhhccCcchhcccCCCCEEECCCCc
Confidence                2233345   677888 7777755555  44443332  123345677777776443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=5.8e-11  Score=106.71  Aligned_cols=161  Identities=19%  Similarity=0.216  Sum_probs=92.9

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ..+++|.+..+...  .++ .+..+++|++|+|++|.+...+....+++|++|++++|.+++  ++. +..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~--~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCC--Cch-hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-cccccccccccc
Confidence            36777777765432  333 356678888888888877655556778888888888887743  222 567888888888


Q ss_pred             eecCCCceeeeCCCCCccEEEEeecCCccEEe--ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHH
Q 009416          194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN  271 (535)
Q Consensus       194 ~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~  271 (535)
                      .+|....--.+..+++|+.+.+.++. +....  ..+++|+.+++.++....+ ..+.++++|+.|++++|.+++-  ..
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~N~i~~l--~~  195 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDL--RA  195 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBC--GG
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccccccccccccccc-ccccCCCCCCEEECCCCCCCCC--hh
Confidence            87764322244555667777666552 11111  1345555555555541111 1244555555555555554431  12


Q ss_pred             hcCCCCCccEEEee
Q 009416          272 GISKLPLLEYLSMT  285 (535)
Q Consensus       272 l~~~~~~L~~L~L~  285 (535)
                       +.++++|+.|+|+
T Consensus       196 -l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         196 -LAGLKNLDVLELF  208 (210)
T ss_dssp             -GTTCTTCSEEEEE
T ss_pred             -hcCCCCCCEEEcc
Confidence             3445555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=6.7e-11  Score=105.36  Aligned_cols=139  Identities=14%  Similarity=0.168  Sum_probs=98.4

Q ss_pred             HhcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEE
Q 009416          112 IESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL  191 (535)
Q Consensus       112 ~~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L  191 (535)
                      ..++++.|+++.+...  .+++ +..+++|++|++++|.+...+.+..+++|+.|+++++......   .+..+++|+.|
T Consensus        60 ~l~nL~~L~Ls~N~l~--~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L  133 (199)
T d2omxa2          60 YLNNLTQINFSNNQLT--DITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID---PLKNLTNLNRL  133 (199)
T ss_dssp             GCTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEE
T ss_pred             cCCCcCcCcccccccc--Cccc-ccCCccccccccccccccccccccccccccccccccccccccc---ccchhhhhHHh
Confidence            3579999999886533  4444 7789999999999998866667889999999999988773321   25689999999


Q ss_pred             EEeecCCCcee-eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHH
Q 009416          192 EIRSCEGLESL-DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC  270 (535)
Q Consensus       192 ~L~~c~~l~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~  270 (535)
                      ++++|.. ..+ .+..+++|+.|.+.+|. +..+                     ..++++++|+.|+++++.+++-  .
T Consensus       134 ~l~~n~l-~~~~~l~~~~~L~~L~l~~n~-l~~l---------------------~~l~~l~~L~~L~ls~N~i~~i--~  188 (199)
T d2omxa2         134 ELSSNTI-SDISALSGLTSLQQLNFSSNQ-VTDL---------------------KPLANLTTLERLDISSNKVSDI--S  188 (199)
T ss_dssp             ECCSSCC-CCCGGGTTCTTCSEEECCSSC-CCCC---------------------GGGTTCTTCCEEECCSSCCCCC--G
T ss_pred             hhhhhhh-ccccccccccccccccccccc-ccCC---------------------ccccCCCCCCEEECCCCCCCCC--c
Confidence            9999864 333 35556677777666551 1111                     1256778888888888877652  2


Q ss_pred             HhcCCCCCccEE
Q 009416          271 NGISKLPLLEYL  282 (535)
Q Consensus       271 ~l~~~~~~L~~L  282 (535)
                      . +.++++|++|
T Consensus       189 ~-l~~L~~L~~L  199 (199)
T d2omxa2         189 V-LAKLTNLESL  199 (199)
T ss_dssp             G-GGGCTTCSEE
T ss_pred             c-ccCCCCCCcC
Confidence            2 4567777765

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.2e-11  Score=75.93  Aligned_cols=35  Identities=29%  Similarity=0.479  Sum_probs=32.9

Q ss_pred             CCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhh
Q 009416           12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW   46 (535)
Q Consensus        12 is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw   46 (535)
                      ++.||+||+.+||+||+.+|++++++|||+|+++.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.4e-11  Score=111.16  Aligned_cols=153  Identities=13%  Similarity=0.026  Sum_probs=77.1

Q ss_pred             CccCCccccCCCceeEEEEeCccccCC--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee-ee
Q 009416          128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DL  204 (535)
Q Consensus       128 ~~~lp~~l~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-~~  204 (535)
                      ...+|..+.  +++++|+|++|.+...  ..+.++++|++|+|++|.++.  ++. ++.+++|++|++++|...... .+
T Consensus        22 L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~~   96 (266)
T d1p9ag_          22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLLG   96 (266)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred             CCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-cccccccccccccccccccccccc
Confidence            445666553  5778888888877422  345677888888887776632  111 346777777777777543211 33


Q ss_pred             CCCCCccEEEEeecCCcc--EEe-ecCCcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCCcc
Q 009416          205 VNLSNLKEIILVNTSDIK--RVE-IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE  280 (535)
Q Consensus       205 ~~l~~L~~L~l~~c~~l~--~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~  280 (535)
                      ..+++|+.|+++++....  ... ...++++.|.+.++....+ ...+..+++|+.++++++.++.... ..+..+++|+
T Consensus        97 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~  175 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLD  175 (266)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCC
T ss_pred             ccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc-cccccccccc
Confidence            445666666666552111  111 1334444555444431111 1123334445555554444433211 1133444444


Q ss_pred             EEEeec
Q 009416          281 YLSMTK  286 (535)
Q Consensus       281 ~L~L~~  286 (535)
                      +|+|++
T Consensus       176 ~L~Ls~  181 (266)
T d1p9ag_         176 TLLLQE  181 (266)
T ss_dssp             EEECCS
T ss_pred             eeeccc
Confidence            444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=1.2e-10  Score=104.56  Aligned_cols=142  Identities=16%  Similarity=0.154  Sum_probs=95.9

Q ss_pred             CCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee-eeCCCCCccEEEEe
Q 009416          138 VESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVNLSNLKEIILV  216 (535)
Q Consensus       138 ~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-~~~~l~~L~~L~l~  216 (535)
                      +.+|++|++++|.+.....+..+++|++|++++|.+++-  .. ++.+++|++|++++|.. ..+ .+..+++|+.|++.
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l--~~-~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCc--cc-cccCccccccccccccc-cccccccccccccccccc
Confidence            578999999999987666788999999999999988542  22 57899999999999863 334 46677888888888


Q ss_pred             ecCCccEEe-ecCCcccEEEEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecC
Q 009416          217 NTSDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       217 ~c~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      +|.....-. ..+++++.+.+.++.... ...+..+++|+.++++++.+++.  .. +.++++|++|+++++
T Consensus       121 ~~~~~~~~~l~~l~~l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~l~~i--~~-l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         121 HNGISDINGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKN  188 (210)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccccccccccccc--cc-ccCCCCCCEEECCCC
Confidence            773211111 145667777766655111 12345566677777776666542  12 456666777766664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.02  E-value=2.3e-10  Score=109.03  Aligned_cols=216  Identities=12%  Similarity=0.062  Sum_probs=128.6

Q ss_pred             CcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCce--eeeCCCCCccEEEEeecCCccEEee-cCCcccEEEE
Q 009416          160 LFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAI  236 (535)
Q Consensus       160 l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~--~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~L~~L~l  236 (535)
                      .+++++|+|++|.++.-. +..+.++++|++|++++|....-  ..+.++++|+.|++.+| .+..++. ..+.++.|..
T Consensus        30 ~~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~~~~~l~~L~~  107 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRV  107 (305)
T ss_dssp             CTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCCTTCCEEEC
T ss_pred             CCCCCEEECcCCcCCCcC-hhHhhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCccchhhhhhhhhc
Confidence            478999999999873211 12367899999999999976532  24667889999999887 2333332 3456677766


Q ss_pred             eeec-ccCeEEecCcccccceeEeeccCCChH-HHHHhcCCCCCccEEEeecCCCCccccc-CCCCCceEEeccCccccc
Q 009416          237 HQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDE-WLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQ  313 (535)
Q Consensus       237 ~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~-~l~~l~~~~~~L~~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~  313 (535)
                      .++. .......+.....+..+....+..... .....+..+++|+.+.+.++.. ..++. ..++|+.|++.++.....
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~~~~~~~L~~L~l~~n~~~~~  186 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKV  186 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEE
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc-cccCcccCCccCEEECCCCcCCCC
Confidence            6554 111111233444555555544432221 1112244556666666666432 22222 223444444443221110


Q ss_pred             ccccCCceeeEEEcCcchhhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccccccccccc
Q 009416          314 VEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENVIVPQELRQ  393 (535)
Q Consensus       314 l~~~~p~L~~L~~~g~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~~~p~~~~~  393 (535)
                                      ....+.+++.++.|.++.+....    ..+..+.   ++++|+ +|+++.+.++  .+|+    
T Consensus       187 ----------------~~~~~~~~~~l~~L~~s~n~l~~----~~~~~~~---~l~~L~-~L~L~~N~L~--~lp~----  236 (305)
T d1xkua_         187 ----------------DAASLKGLNNLAKLGLSFNSISA----VDNGSLA---NTPHLR-ELHLNNNKLV--KVPG----  236 (305)
T ss_dssp             ----------------CTGGGTTCTTCCEEECCSSCCCE----ECTTTGG---GSTTCC-EEECCSSCCS--SCCT----
T ss_pred             ----------------ChhHhhccccccccccccccccc----ccccccc---ccccce-eeeccccccc--cccc----
Confidence                            01456788899998886553332    2234556   789999 8888866666  6777    


Q ss_pred             cCCCCcccceeeEEEE
Q 009416          394 IQSPPLTSVKKLNYSV  409 (535)
Q Consensus       394 ~~~~~l~~L~~L~l~~  409 (535)
                       .+..+++|++|+++.
T Consensus       237 -~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         237 -GLADHKYIQVVYLHN  251 (305)
T ss_dssp             -TTTTCSSCCEEECCS
T ss_pred             -ccccccCCCEEECCC
Confidence             777889999999974

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=8e-11  Score=110.00  Aligned_cols=167  Identities=16%  Similarity=0.078  Sum_probs=124.7

Q ss_pred             cCceEEEEeccCCCCccCCc-cccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEE
Q 009416          114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE  192 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~  192 (535)
                      +++++|+|..+..  ..+|. .+..+++|++|+|++|.+...+..+.+++|++|+|++|.+...  ...+..+++|+.|+
T Consensus        31 ~~l~~L~Ls~N~i--~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcC--CCcCHHHhhcccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence            5899999887643  35664 4667899999999999886555667899999999999987432  23467899999999


Q ss_pred             EeecCCCc--eeeeCCCCCccEEEEeecCCccEEe----ecCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416          193 IRSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       193 L~~c~~l~--~~~~~~l~~L~~L~l~~c~~l~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~  265 (535)
                      ++++....  ......+++++.|.+.++ .+..+.    ..+++|+.++++++. .......+..+++|++|+|++|.++
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccceeecccccccccccccccccc-ccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            99987543  224456789999999887 222222    257899999999988 3332345788999999999999887


Q ss_pred             hHHHHHhcCCCCCccEEEeecC
Q 009416          266 DEWLCNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       266 ~~~l~~l~~~~~~L~~L~L~~c  287 (535)
                      . .+.. +..+++|+.|+|.+.
T Consensus       186 ~-lp~~-~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         186 T-IPKG-FFGSHLLPFAFLHGN  205 (266)
T ss_dssp             C-CCTT-TTTTCCCSEEECCSC
T ss_pred             c-cChh-HCCCCCCCEEEecCC
Confidence            3 3333 446788999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.7e-10  Score=106.41  Aligned_cols=199  Identities=15%  Similarity=0.079  Sum_probs=120.3

Q ss_pred             CccCCccccCCCceeEEEEeCccccC-C-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---
Q 009416          128 RRNLPEIIFYVESLHVLELSYCKLQQ-P-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---  202 (535)
Q Consensus       128 ~~~lp~~l~~~~~L~~L~L~~~~~~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---  202 (535)
                      ...+|..+.  +++++|+|++|.+.. + ..+.++++|++|+++++.+.... ......++.++.+.+..+..+..+   
T Consensus        23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-cccccccccccccccccccccccccch
Confidence            446666543  678999999998843 3 45778999999999988773221 123566788888887776666554   


Q ss_pred             eeCCCCCccEEEEeecCC--ccEEee-cCCcccEEEEeeecccCe-EEecCcccccceeEeeccCCChHHHHHhcCCCCC
Q 009416          203 DLVNLSNLKEIILVNTSD--IKRVEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL  278 (535)
Q Consensus       203 ~~~~l~~L~~L~l~~c~~--l~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~  278 (535)
                      .+.++++|+.|++.++..  +..... ..++|+.+++.++.-..+ ...+..+++|+.|+++++.+..... ..+.++++
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~-~~f~~l~~  178 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHS  178 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTT
T ss_pred             hhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch-hhhccccc
Confidence            456678888888887732  111111 456677777777662222 2345566777777777776654222 23556677


Q ss_pred             ccEEEeecCCCCcccccCCCCCceEEeccCcccccccccCCceeeEEEcCcch-----hhcccCcccceeEEEEe
Q 009416          279 LEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS  348 (535)
Q Consensus       279 L~~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~  348 (535)
                      |+.+.+.++....-.+..+                  ...++|+.++++++..     ..++++++|+.++++.+
T Consensus       179 L~~l~l~~N~l~~i~~~~f------------------~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAF------------------RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCEEECCSSCCCEECTTTT------------------TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cchhhhhhccccccChhHh------------------hhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            7777777654332222211                  1123344444433332     45677888998888654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.89  E-value=9.5e-09  Score=99.22  Aligned_cols=139  Identities=24%  Similarity=0.199  Sum_probs=89.3

Q ss_pred             HHHhcCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCC-Ccc
Q 009416          110 LAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGC-PLI  188 (535)
Q Consensus       110 ~~~~~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~-p~L  188 (535)
                      .....++++|+++.++-  ..+|..   .++|++|+|++|.+...+  ..+.+|++|++.++.++.      +..+ +.|
T Consensus        34 ~c~~~~l~~LdLs~~~L--~~lp~~---~~~L~~L~Ls~N~l~~lp--~~~~~L~~L~l~~n~l~~------l~~lp~~L  100 (353)
T d1jl5a_          34 DCLDRQAHELELNNLGL--SSLPEL---PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA------LSDLPPLL  100 (353)
T ss_dssp             HHHHHTCSEEECTTSCC--SCCCSC---CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC------CCSCCTTC
T ss_pred             HHHHcCCCEEEeCCCCC--CCCCCC---CCCCCEEECCCCCCcccc--cchhhhhhhhhhhcccch------hhhhcccc
Confidence            33445889998877653  467864   478999999999885433  235789999999887632      2233 469


Q ss_pred             cEEEEeecCCCcee-eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeEEecCcccccceeEeeccCC
Q 009416          189 EYLEIRSCEGLESL-DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI  264 (535)
Q Consensus       189 e~L~L~~c~~l~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~  264 (535)
                      ++|++++|... .+ ....+++|+.|++.++.. .......+.+..+.+....... ...+..++.++.+.+..+..
T Consensus       101 ~~L~L~~n~l~-~lp~~~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         101 EYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             CEEECCSSCCS-SCCCCTTCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc-cccchhhhccceeeccccccc-cccccccccccchhhccccccc-cccccccccceecccccccc
Confidence            99999988643 33 455678999999987722 2222234556666665444111 23355666777777665543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=8.7e-10  Score=110.74  Aligned_cols=108  Identities=13%  Similarity=0.204  Sum_probs=72.8

Q ss_pred             ceeEEEEEEecCCCCCChhhHHHHHHHHHhcCceEEEEeccCCCC---ccCCccccCCCceeEEEEeCccccCC------
Q 009416           84 SIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP------  154 (535)
Q Consensus        84 ~l~~l~l~~~~~~~~~~~~~~~~wl~~~~~~~l~~L~L~~~~~~~---~~lp~~l~~~~~L~~L~L~~~~~~~~------  154 (535)
                      .++.+.++....    ....+..++  ...++++.|+|..|....   ..+...+..+++|++|+|++|.+...      
T Consensus         3 ~l~~ld~~~~~i----~~~~~~~l~--~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQCEEL----SDARWAELL--PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEESCCC----CHHHHHHHH--HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCEEEeeCCcC----ChHHHHHHH--HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH
Confidence            467777764422    222233333  335799999999886432   23445567889999999999976321      


Q ss_pred             CCc-ccCcccceeEeeeEeeChhH---HHHHHhCCCcccEEEEeecC
Q 009416          155 SEN-VKLFSLRKLALREVCADDQA---IASLISGCPLIEYLEIRSCE  197 (535)
Q Consensus       155 ~~~-~~l~~L~~L~L~~~~~~~~~---l~~~~~~~p~Le~L~L~~c~  197 (535)
                      ..+ ...++|++|+|++|.+++..   +...+..+++|++|++++|.
T Consensus        77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            111 12357999999999886544   44456789999999999886

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=1.4e-09  Score=84.63  Aligned_cols=43  Identities=23%  Similarity=0.477  Sum_probs=38.6

Q ss_pred             CCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhhccCCc
Q 009416            9 VDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPD   51 (535)
Q Consensus         9 ~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw~~~~~   51 (535)
                      .|.|+.||+||+.+||+||+++|++++++|||+|+++....+.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~   45 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTS   45 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHH
Confidence            5899999999999999999999999999999999987654443

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.4e-09  Score=82.12  Aligned_cols=40  Identities=30%  Similarity=0.447  Sum_probs=37.1

Q ss_pred             CCCCcCCCCCHHHHHHHHcCCChhHHHHHhhhhhhhHHhh
Q 009416            7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW   46 (535)
Q Consensus         7 ~~~D~is~LPdeiL~~Ils~L~~~d~~r~s~vskrWr~lw   46 (535)
                      -..|.|+.||+||+.+||+||+++|+++++.|||+|+.+.
T Consensus        14 ~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             hccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            3479999999999999999999999999999999999764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.7e-09  Score=98.64  Aligned_cols=190  Identities=15%  Similarity=0.108  Sum_probs=110.8

Q ss_pred             cccEEEEeeecccCeE-EecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCCCCccccc----CCCCCceEE
Q 009416          230 NVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLI  304 (535)
Q Consensus       230 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~----~~~~L~~L~  304 (535)
                      ++++|+++++.-..++ ..+.++++|++|+++++.+...... .+.+++.++.+.+.....++.++.    ..++|+.|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccc-cccccccccccccccccccccccchhhcccccCCEEe
Confidence            3455555554411111 2356666677777766665443222 244556666666665555444432    235666666


Q ss_pred             eccCccc---ccccccCCceeeEEEcCcch-----hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEE
Q 009416          305 LECCDKL---IQVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLN  376 (535)
Q Consensus       305 l~~c~~L---~~l~~~~p~L~~L~~~g~~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~  376 (535)
                      +..+..-   .......++|+.+.+.+...     ..+.++++|+.|++..+....    ..+..+.   ++++|+ .+.
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~----l~~~~f~---~l~~L~-~l~  183 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS----VPERAFR---GLHSLD-RLL  183 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE----ECTTTTT---TCTTCC-EEE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc----cchhhhc---cccccc-hhh
Confidence            6655431   11112345677777766544     345677889998886553332    2234445   788999 887


Q ss_pred             EEeeccccccccccccccCCCCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeec
Q 009416          377 LQCREGENVIVPQELRQIQSPPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHG  452 (535)
Q Consensus       377 L~~~~l~~~~~p~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~  452 (535)
                      ++.+.+. ...|.     .+..+++|++|+++..                  .+..+....|..+++|+.|.+...
T Consensus       184 l~~N~l~-~i~~~-----~f~~l~~L~~L~l~~N------------------~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         184 LHQNRVA-HVHPH-----AFRDLGRLMTLYLFAN------------------NLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCSSCCC-EECTT-----TTTTCTTCCEEECCSS------------------CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhhcccc-ccChh-----Hhhhhhhccccccccc------------------ccccccccccccccccCEEEecCC
Confidence            7766666 44455     6777889999998621                  223344446778899999999844

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.6e-09  Score=107.20  Aligned_cols=318  Identities=15%  Similarity=0.097  Sum_probs=175.6

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCC------CCcccCcccceeEeeeEeeChhHHHHHHhC---
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQAIASLISG---  184 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~---  184 (535)
                      .+|+.|+++........+...+..+++++.|+|++|.+...      ..+..+++|++|+|++|.+++..+..+...   
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36889999876655555555566679999999999987421      224678999999999998876666655443   


Q ss_pred             -CCcccEEEEeecCCCce----e--eeCCCCCccEEEEeecCC------------------ccEEee-------------
Q 009416          185 -CPLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNTSD------------------IKRVEI-------------  226 (535)
Q Consensus       185 -~p~Le~L~L~~c~~l~~----~--~~~~l~~L~~L~l~~c~~------------------l~~~~~-------------  226 (535)
                       .++|++|++++|..-..    +  .+..+++|++|++++|.-                  ......             
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence             35799999999964221    1  345678999999987610                  000000             


Q ss_pred             -----cCCcccEEEEeeeccc--C--------------------------------eEEecCcccccceeEeeccCCChH
Q 009416          227 -----KTSNVNALAIHQTYLF--P--------------------------------IEVNVSSCGNLKCLKFDFLPIEDE  267 (535)
Q Consensus       227 -----~~~~L~~L~l~~~~~~--~--------------------------------~~~~~~~l~~L~~L~L~~~~~~~~  267 (535)
                           ..+.++.+.++++...  .                                ....+...+.++.+.+..+.+...
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence                 1123444444332200  0                                000012234455555555544332


Q ss_pred             ----HHHHhcCCCCCccEEEeecCCCCcccc-------cCCCCCceEEeccCcc----c----ccccccCCceeeEEEcC
Q 009416          268 ----WLCNGISKLPLLEYLSMTKCHKLTSVR-------ISSPCLKTLILECCDK----L----IQVEIETPNLSIFKYHG  328 (535)
Q Consensus       268 ----~l~~l~~~~~~L~~L~L~~c~~l~~l~-------~~~~~L~~L~l~~c~~----L----~~l~~~~p~L~~L~~~g  328 (535)
                          .........+.++.|+++++.......       ...+.++.++++++.-    +    ..+....+.|+.+.+.+
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                222334455667777776654321110       1234566666655431    0    11112334677777776


Q ss_pred             cch---------hhcccCcccceeEEEEecccchhhHhHHHHHhhhhcccccceeEEEEeeccccc---cccccccccCC
Q 009416          329 DLI---------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFSKVLNLQCREGENV---IVPQELRQIQS  396 (535)
Q Consensus       329 ~~~---------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l~~~~~l~~L~~~L~L~~~~l~~~---~~p~~~~~~~~  396 (535)
                      +..         ..+...++|++|+++.+.........+.+.+.  -..+.|+ +|.++.+.+...   .+++     .+
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~--~~~~~L~-~L~Ls~n~i~~~~~~~l~~-----~l  393 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG--QPGSVLR-VLWLADCDVSDSSCSSLAA-----TL  393 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT--STTCCCC-EEECTTSCCCHHHHHHHHH-----HH
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhh--cccCCCC-EEECCCCCCChHHHHHHHH-----HH
Confidence            543         12345667888888654322111122333332  0345688 888875455522   2233     33


Q ss_pred             CCcccceeeEEEEeecCCccccchhcccccccchhHHhhhhhccCcccceEEEeec
Q 009416          397 PPLTSVKKLNYSVRTDSWDFSVANVRARSSRFSIANVLDGLLWTSPHAEMVSIEHG  452 (535)
Q Consensus       397 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~p~Le~L~l~~~  452 (535)
                      ...++|++|+|+...           .++  .++..+...+-.....||.|.+...
T Consensus       394 ~~~~~L~~L~Ls~N~-----------i~~--~g~~~l~~~l~~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         394 LANHSLRELDLSNNC-----------LGD--AGILQLVESVRQPGCLLEQLVLYDI  436 (460)
T ss_dssp             HHCCCCCEEECCSSS-----------CCH--HHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             hcCCCCCEEECCCCc-----------CCH--HHHHHHHHHHHhCCCccCEEECCCC
Confidence            445789999886321           122  2555665555555567999998743

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=8.3e-08  Score=87.46  Aligned_cols=87  Identities=20%  Similarity=0.244  Sum_probs=44.3

Q ss_pred             cCCccccCCCceeEEEEeCccccC-C-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---ee
Q 009416          130 NLPEIIFYVESLHVLELSYCKLQQ-P-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DL  204 (535)
Q Consensus       130 ~lp~~l~~~~~L~~L~L~~~~~~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~  204 (535)
                      .+|..+.  +++++|+|+++.+.. + ..+.++++|++|++++|.+....-...+.+++.+++|.+..+..+...   .+
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            4554332  356666666665532 2 234556666666666654421100112345566666666555444433   23


Q ss_pred             CCCCCccEEEEeec
Q 009416          205 VNLSNLKEIILVNT  218 (535)
Q Consensus       205 ~~l~~L~~L~l~~c  218 (535)
                      .++++|+.+.+.++
T Consensus       100 ~~l~~L~~l~l~~~  113 (242)
T d1xwdc1         100 QNLPNLQYLLISNT  113 (242)
T ss_dssp             ECCTTCCEEEEESC
T ss_pred             cccccccccccchh
Confidence            44566666666665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.56  E-value=1.1e-07  Score=91.54  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=44.0

Q ss_pred             cCceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEE
Q 009416          114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI  193 (535)
Q Consensus       114 ~~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L  193 (535)
                      ++++.|+++.+.  ...+|..+   .+|+.|+++++.+...+..  .+.|++|+++++.+..  ++. .+.+++|+.|++
T Consensus        58 ~~L~~L~Ls~N~--l~~lp~~~---~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          58 PHLESLVASCNS--LTELPELP---QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TTCSEEECCSSC--CSSCCCCC---TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECCCCC--Ccccccch---hhhhhhhhhhcccchhhhh--cccccccccccccccc--ccc-hhhhccceeecc
Confidence            477888776543  33566543   5677777777766432211  1357777777776632  111 345677777777


Q ss_pred             eecCC
Q 009416          194 RSCEG  198 (535)
Q Consensus       194 ~~c~~  198 (535)
                      +++..
T Consensus       128 ~~~~~  132 (353)
T d1jl5a_         128 DNNSL  132 (353)
T ss_dssp             CSSCC
T ss_pred             ccccc
Confidence            66643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.9e-09  Score=90.89  Aligned_cols=125  Identities=13%  Similarity=0.065  Sum_probs=66.2

Q ss_pred             cCCCceeEEEEeCccccCC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceee---eCCCCCcc
Q 009416          136 FYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLK  211 (535)
Q Consensus       136 ~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~---~~~l~~L~  211 (535)
                      .++.+|++|+|++|.+... .....+++|+.|+|++|.+..  ++. ++.+++|++|++++|.. ..+.   ...++   
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~---   87 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNRI-CRIGEGLDQALP---   87 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSCC-CEECSCHHHHCT---
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhcccccc-cCCCcccccccc---
Confidence            4566778888888877443 233557777777777776632  111 45667777777776653 2221   12234   


Q ss_pred             EEEEeecCCccEEeecCCcccEEEEeeecccCe--EEecCcccccceeEeeccCCChHH--HHHhcCCCCCccEEEee
Q 009416          212 EIILVNTSDIKRVEIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSMT  285 (535)
Q Consensus       212 ~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~--l~~l~~~~~~L~~L~L~  285 (535)
                                        +|+.|++.+|.....  ...+..+++|++|++++|.++...  -...+..+|+|+.|+-.
T Consensus        88 ------------------~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          88 ------------------DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             ------------------TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ------------------ccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence                              444444444431110  123455666666776666554321  12234456666666533

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.6e-07  Score=85.48  Aligned_cols=97  Identities=20%  Similarity=0.141  Sum_probs=66.8

Q ss_pred             eEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee---eeCCCCCccEEEEeec
Q 009416          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNT  218 (535)
Q Consensus       142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~---~~~~l~~L~~L~l~~c  218 (535)
                      +.++.++..+...|. .-.+++++|+++++.++.-. ...+.++++|++|++++|.....+   .+.++++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCS-CSCSCCSEEEEESCCCCEEC-TTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCC-CCCCCCCEEECcCCcCCccC-hhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            456666666543221 12358999999999874211 123678999999999999876654   3556789999988877


Q ss_pred             CCccEEe----ecCCcccEEEEeeec
Q 009416          219 SDIKRVE----IKTSNVNALAIHQTY  240 (535)
Q Consensus       219 ~~l~~~~----~~~~~L~~L~l~~~~  240 (535)
                      ..+....    ..+++|+.+.+.++.
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             ccccccccccccccccccccccchhh
Confidence            6665544    256778888887765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=9.6e-09  Score=83.26  Aligned_cols=53  Identities=17%  Similarity=0.159  Sum_probs=28.5

Q ss_pred             EEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecC
Q 009416          143 VLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE  197 (535)
Q Consensus       143 ~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~  197 (535)
                      .|+|++|.+...+.+..+++|++|++++|.++.  ++..++.+++|+.|++++|.
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~   54 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA   54 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhccccccccccc
Confidence            455666655444445566666666666665532  11224455666666666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.52  E-value=4.7e-10  Score=99.44  Aligned_cols=147  Identities=19%  Similarity=0.169  Sum_probs=87.7

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEe
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR  194 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~  194 (535)
                      .++.+.+....+....+|..+..+++|++|+|++|.+...+.+..+++|++|++++|.++.  ++.+...+++|++|+++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWIS  101 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECS
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--ccccccccccccccccc
Confidence            3455555543334456667777888999999999888655667788999999999988742  12223345678888888


Q ss_pred             ecCCCcee-eeCCCCCccEEEEeecCCccEEeecCCcccEEEEeeecccCeE--EecCcccccceeEeeccCCChHH---
Q 009416          195 SCEGLESL-DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE--VNVSSCGNLKCLKFDFLPIEDEW---  268 (535)
Q Consensus       195 ~c~~l~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~---  268 (535)
                      +|.. ..+ .+..+++|+                     .|+++++....+.  ..+..+++|+.|++++|.+....   
T Consensus       102 ~N~i-~~l~~~~~l~~L~---------------------~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  159 (198)
T d1m9la_         102 YNQI-ASLSGIEKLVNLR---------------------VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             EEEC-CCHHHHHHHHHSS---------------------EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTT
T ss_pred             cccc-ccccccccccccc---------------------ccccccchhccccccccccCCCccceeecCCCccccCcccc
Confidence            8742 222 222334444                     4444444311111  23556677777777666543211   


Q ss_pred             ------HHHhcCCCCCccEEEee
Q 009416          269 ------LCNGISKLPLLEYLSMT  285 (535)
Q Consensus       269 ------l~~l~~~~~~L~~L~L~  285 (535)
                            -..++..+|+|+.|+-.
T Consensus       160 ~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         160 NATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCCEESSG
T ss_pred             cchhhHHHHHHHHCCCcCEeCCc
Confidence                  12234567888887633

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.6e-08  Score=86.16  Aligned_cols=101  Identities=14%  Similarity=0.144  Sum_probs=72.6

Q ss_pred             CceEEEEeccCCCCccCCccccCCCceeEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEe
Q 009416          115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR  194 (535)
Q Consensus       115 ~l~~L~L~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~  194 (535)
                      ++++|++..+..  ..+|.....+++|++|+|++|.+...+.+..+++|++|++++|.+..-. ..++..+|+|++|+++
T Consensus        19 ~lr~L~L~~n~I--~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCC--CSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCC--CccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCC-ccccccccccccceec
Confidence            678888887653  4566655668999999999998865466788999999999999884311 1234679999999999


Q ss_pred             ecCCC--cee-eeCCCCCccEEEEeec
Q 009416          195 SCEGL--ESL-DLVNLSNLKEIILVNT  218 (535)
Q Consensus       195 ~c~~l--~~~-~~~~l~~L~~L~l~~c  218 (535)
                      +|..-  ..+ .+..+++|++|++.+|
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccccchhhcCCC
Confidence            99642  222 3444566666666555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.33  E-value=3.3e-08  Score=95.41  Aligned_cols=39  Identities=21%  Similarity=0.149  Sum_probs=21.4

Q ss_pred             CcccccceeEeeccCCChHHH----HHhcCCCCCccEEEeecC
Q 009416          249 SSCGNLKCLKFDFLPIEDEWL----CNGISKLPLLEYLSMTKC  287 (535)
Q Consensus       249 ~~l~~L~~L~L~~~~~~~~~l----~~l~~~~~~L~~L~L~~c  287 (535)
                      ..++.|+.|+++.+.+.....    ...+..+++|+.|+++++
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N  225 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN  225 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccc
Confidence            345566666666666655322    222445566666666654

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=8e-08  Score=76.86  Aligned_cols=38  Identities=37%  Similarity=0.604  Sum_probs=35.0

Q ss_pred             CCCcCCCCC----HHHHHHHHcCCChhHHHHHhhhhhhhHHh
Q 009416            8 EVDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQV   45 (535)
Q Consensus         8 ~~D~is~LP----deiL~~Ils~L~~~d~~r~s~vskrWr~l   45 (535)
                      ..|.|+.||    |||+.+||+||+++|++++++|||+|+++
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            358899999    59999999999999999999999999975

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=3.7e-07  Score=73.55  Aligned_cols=85  Identities=16%  Similarity=0.139  Sum_probs=54.5

Q ss_pred             cCCccccCCCceeEEEEeCccccCC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCC--cee-eeC
Q 009416          130 NLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGL--ESL-DLV  205 (535)
Q Consensus       130 ~lp~~l~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l--~~~-~~~  205 (535)
                      .++ .+..+++|++|++++|.+... +.+..+++|++|++++|.++.  ++. +..+|+|++|++++|..-  ..+ .+.
T Consensus        12 ~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~   87 (124)
T d1dcea3          12 VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNNRLQQSAAIQPLV   87 (124)
T ss_dssp             SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             CCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCCccCCCCCchhhc
Confidence            444 356677777777777777433 456677777777777777632  122 567777777777777542  222 345


Q ss_pred             CCCCccEEEEeec
Q 009416          206 NLSNLKEIILVNT  218 (535)
Q Consensus       206 ~l~~L~~L~l~~c  218 (535)
                      .+++|+.|+++++
T Consensus        88 ~~~~L~~L~l~~N  100 (124)
T d1dcea3          88 SCPRLVLLNLQGN  100 (124)
T ss_dssp             GCTTCCEEECTTS
T ss_pred             CCCCCCEEECCCC
Confidence            5677777777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.12  E-value=3.1e-07  Score=88.38  Aligned_cols=82  Identities=20%  Similarity=0.235  Sum_probs=45.0

Q ss_pred             CCcccEEEEeeecccC------eEEecCcccccceeEeeccCCChHH---HHHhcCCCCCccEEEeecCCCCcc----cc
Q 009416          228 TSNVNALAIHQTYLFP------IEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLTS----VR  294 (535)
Q Consensus       228 ~~~L~~L~l~~~~~~~------~~~~~~~l~~L~~L~L~~~~~~~~~---l~~l~~~~~~L~~L~L~~c~~l~~----l~  294 (535)
                      +++|+.|++.++....      ....+..+++|+.|++++|.++...   +...+..+++|++|++++|.--..    +.
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            4556666665554110      1122455677777777777766543   333456677777777777642111    11


Q ss_pred             ----c-CCCCCceEEeccCc
Q 009416          295 ----I-SSPCLKTLILECCD  309 (535)
Q Consensus       295 ----~-~~~~L~~L~l~~c~  309 (535)
                          . ...+|++|+++++.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSC
T ss_pred             HHhhhccCCCCCEEECCCCc
Confidence                1 23467777777653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.07  E-value=4.5e-07  Score=79.30  Aligned_cols=88  Identities=19%  Similarity=0.168  Sum_probs=58.2

Q ss_pred             CCccCCccccCCCceeEEEEeCccccC-C--CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee-
Q 009416          127 ERRNLPEIIFYVESLHVLELSYCKLQQ-P--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-  202 (535)
Q Consensus       127 ~~~~lp~~l~~~~~L~~L~L~~~~~~~-~--~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~-  202 (535)
                      ....+|..+.  +++++|+|++|.+.. .  ..+..+++|+.|+|++|.+... ....+..+++|++|++++|.. ..+ 
T Consensus        19 ~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l-~~l~   94 (192)
T d1w8aa_          19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-KEIS   94 (192)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-CEEC
T ss_pred             CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccc-cccC
Confidence            3446776553  688899999988842 2  4557788999999988877322 123356788888888888853 333 


Q ss_pred             --eeCCCCCccEEEEeec
Q 009416          203 --DLVNLSNLKEIILVNT  218 (535)
Q Consensus       203 --~~~~l~~L~~L~l~~c  218 (535)
                        .+.++++|++|+++++
T Consensus        95 ~~~F~~l~~L~~L~L~~N  112 (192)
T d1w8aa_          95 NKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             SSSSTTCTTCCEEECCSS
T ss_pred             HHHHhCCCcccccccCCc
Confidence              3445566666665554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.05  E-value=1.1e-06  Score=76.61  Aligned_cols=122  Identities=13%  Similarity=0.129  Sum_probs=71.1

Q ss_pred             eEEEEeCccccCCCCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCcee--eeCCCCCccEEEEeecC
Q 009416          142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTS  219 (535)
Q Consensus       142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~--~~~~l~~L~~L~l~~c~  219 (535)
                      +.++.+++.+...|. +-.+++++|+|++|.++.......+..+++|++|+|++|......  .+..+++|++|+++++ 
T Consensus        11 ~~v~Cs~~~L~~iP~-~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-   88 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-
T ss_pred             CEEEEeCCCcCccCC-CCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-
Confidence            345566655532221 112577777777777632222223556777777777776543222  3445677777777776 


Q ss_pred             CccEEe---e-cCCcccEEEEeeec-ccCeEEecCcccccceeEeeccCCC
Q 009416          220 DIKRVE---I-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE  265 (535)
Q Consensus       220 ~l~~~~---~-~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~  265 (535)
                      .+..+.   + ++++|+.|+++++. ....+..+..+++|++|+|+++.+.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            333332   2 56777777777776 2222234667778888888777654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.03  E-value=2e-07  Score=81.94  Aligned_cols=110  Identities=18%  Similarity=0.161  Sum_probs=71.9

Q ss_pred             CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCCCceeeeCCCCCccEEEEeecCCccEEeecCCcccEE
Q 009416          155 SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNAL  234 (535)
Q Consensus       155 ~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~L~~L  234 (535)
                      ..+..+++|++|+|++|.++.  ++. +..+++|+.|++++|.. ..                   +..+....++|+.|
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~i-~~-------------------i~~~~~~~~~L~~L   98 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNLI-KK-------------------IENLDAVADTLEEL   98 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEEE-CS-------------------CSSHHHHHHHCCEE
T ss_pred             hHHhcccccceeECcccCCCC--ccc-ccCCccccChhhccccc-cc-------------------cccccccccccccc
Confidence            345678888888888887742  111 45667788888877741 11                   11111124567777


Q ss_pred             EEeeecccCeEEecCcccccceeEeeccCCChHHHHHhcCCCCCccEEEeecCC
Q 009416          235 AIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH  288 (535)
Q Consensus       235 ~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~L~~c~  288 (535)
                      ++.++....+ ..+..+++|+.|++++|.++.......+..+++|+.|++.+++
T Consensus        99 ~l~~N~i~~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          99 WISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ECSEEECCCH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccc-ccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            7777762222 2367789999999999988764332336789999999999854

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00014  Score=60.37  Aligned_cols=58  Identities=10%  Similarity=-0.045  Sum_probs=29.7

Q ss_pred             CceeEEEEeCccc-cCCCCcccCcccceeEeeeEe-eChhHHHHHHhCCCcccEEEEeecC
Q 009416          139 ESLHVLELSYCKL-QQPSENVKLFSLRKLALREVC-ADDQAIASLISGCPLIEYLEIRSCE  197 (535)
Q Consensus       139 ~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~-~~~~~l~~~~~~~p~Le~L~L~~c~  197 (535)
                      ...+.++.++..+ ..+..+..+++|++|++.++. ++.-. ...+.++++|+.|++++|.
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~   67 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG   67 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccC-chhhccccccCcceeeccc
Confidence            3344555555544 333445566677777775443 32111 1124556666666666663

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00027  Score=58.60  Aligned_cols=70  Identities=17%  Similarity=0.023  Sum_probs=52.5

Q ss_pred             CccCCccccCCCceeEEEEeCcc-cc-CC-CCcccCcccceeEeeeEeeChhHHHHHHhCCCcccEEEEeecCC
Q 009416          128 RRNLPEIIFYVESLHVLELSYCK-LQ-QP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG  198 (535)
Q Consensus       128 ~~~lp~~l~~~~~L~~L~L~~~~-~~-~~-~~~~~l~~L~~L~L~~~~~~~~~l~~~~~~~p~Le~L~L~~c~~  198 (535)
                      ....|..+...++|++|++++++ +. .+ ..+.++++|+.|++++|.++.-. +..+..+++|++|+|++|..
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCC
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCCC
Confidence            44667777788999999998764 53 22 45788999999999999874211 23367889999999999864

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.11  E-value=0.0008  Score=56.36  Aligned_cols=38  Identities=11%  Similarity=0.052  Sum_probs=20.1

Q ss_pred             cccccceeEeeccCCChHHHHH---hcCCCCCccEEEeecC
Q 009416          250 SCGNLKCLKFDFLPIEDEWLCN---GISKLPLLEYLSMTKC  287 (535)
Q Consensus       250 ~l~~L~~L~L~~~~~~~~~l~~---l~~~~~~L~~L~L~~c  287 (535)
                      ..+.|++|+|+++.+++.....   .+...+.|++|++.++
T Consensus        70 ~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          70 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3445566666666665543322   2444556666666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.00042  Score=57.83  Aligned_cols=61  Identities=20%  Similarity=0.083  Sum_probs=35.3

Q ss_pred             CCCceeEEEEeCccccCCC----CcccCcccceeEeeeEeeC-hhHHHHHHhCCCcccEEEEeecCCC
Q 009416          137 YVESLHVLELSYCKLQQPS----ENVKLFSLRKLALREVCAD-DQAIASLISGCPLIEYLEIRSCEGL  199 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~~----~~~~l~~L~~L~L~~~~~~-~~~l~~~~~~~p~Le~L~L~~c~~l  199 (535)
                      .+++|++|+|++|.+....    .+..+++|+.|+|++|.++ ...+.. + ..+.|++|.+.+|+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCCcC
Confidence            3566777777777664321    2345677777777777663 233332 2 3445777777776543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.08  E-value=0.0037  Score=52.03  Aligned_cols=60  Identities=13%  Similarity=0.044  Sum_probs=28.3

Q ss_pred             CCCceeEEEEeCccccCC------CCcccCcccceeEeeeEeeChhHHHHH---HhCCCcccEEEEeec
Q 009416          137 YVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQAIASL---ISGCPLIEYLEIRSC  196 (535)
Q Consensus       137 ~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~~~l~~~---~~~~p~Le~L~L~~c  196 (535)
                      ..++|++|+|++|.+...      ..+...+.|++|+|++|.+++.+...+   +...++|++|+++++
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            345566666665544211      112234556666666665544333322   334455555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.48  E-value=0.0036  Score=52.06  Aligned_cols=39  Identities=8%  Similarity=0.104  Sum_probs=22.8

Q ss_pred             cCcccceeEeeeE-eeChhHHHHH---HhCCCcccEEEEeecC
Q 009416          159 KLFSLRKLALREV-CADDQAIASL---ISGCPLIEYLEIRSCE  197 (535)
Q Consensus       159 ~l~~L~~L~L~~~-~~~~~~l~~~---~~~~p~Le~L~L~~c~  197 (535)
                      +.++|++|+++++ .+++..+..+   +..++.|++|++++|.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~   57 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR   57 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc
Confidence            4567777777663 3455444333   3456667777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.0015  Score=54.20  Aligned_cols=80  Identities=25%  Similarity=0.277  Sum_probs=57.7

Q ss_pred             hcCceEEEEeccCCCCc-cCCccccCCCceeEEEEeCccccCCCC--cccCcccceeEeeeEeeCh------hHHHHHHh
Q 009416          113 ESEVKELVLVHWRSERR-NLPEIIFYVESLHVLELSYCKLQQPSE--NVKLFSLRKLALREVCADD------QAIASLIS  183 (535)
Q Consensus       113 ~~~l~~L~L~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~------~~l~~~~~  183 (535)
                      .++++.|+++.+..... .++..+..+++|+.|+|++|.+...+.  ......|+.|++.+|.+..      .....++.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            46899999988764432 234455678999999999999865422  2345679999999997732      23446677


Q ss_pred             CCCcccEEE
Q 009416          184 GCPLIEYLE  192 (535)
Q Consensus       184 ~~p~Le~L~  192 (535)
                      .+|+|+.|+
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            899999884

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.64  E-value=0.15  Score=41.49  Aligned_cols=39  Identities=10%  Similarity=0.097  Sum_probs=24.1

Q ss_pred             CcccccceeEeec-cCCChHHHHH---hcCCCCCccEEEeecC
Q 009416          249 SSCGNLKCLKFDF-LPIEDEWLCN---GISKLPLLEYLSMTKC  287 (535)
Q Consensus       249 ~~l~~L~~L~L~~-~~~~~~~l~~---l~~~~~~L~~L~L~~c  287 (535)
                      .+.+.|++|.+++ +.++...+..   .+...++|++|++++|
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n   56 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT   56 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC
Confidence            3456777777775 4466654433   2345677777777765