Citrus Sinensis ID: 009423

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNSGSHGDGSISDDGNSSIDGSSGGVSET
ccccccccccccccccccccccccccccccccccccEEEccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEEcccccccccHHHHcccccHHHHHHHHHHcccEEEccccHHHHHHccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHccccEEcHHHHHHHHHHcccEEEEEEEEccccccccEEEEEEEEcccccEEEEEEccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccHHHHHHHHHHHHcccccHHHHHHccccccccHHHHHHHHHHHcccccEEEcccccccccccccccEEEEEEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
ccccccccccEEEEEcccccccEcccccEccccccEEEcccccEEEEEEEcccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccEEEEccccccccEEEEEEHHHccHHHHHHHHHHEccccEEEEcHHHHHHccccEccccccccccccEEccEEEcccccccccccHHHHHHHHHHHHcccccHHHEEEEEEEEEEEccccHHHccccHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHccccEEEHHHHHHHHHHHHHHEEEEEEEccccccccEEEEEEEEEccccEEEEEEEccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHHHHccccHHHHHHHccccHcHHHHcHHHHHHHHHcccEEEEEEccccHEEccccccEEEEEcccEEEcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
MSTSNLYCSSMALLvrepqggsclhfvkpfsadgclsiknvgrIKTAALVsgegdvisypnnnkkytaietqsdtigfgtlgaeitpktsdffpnddefdldrptkgfASISEAIEDIRQGKLVIVVddedrenegdlimaaslvtPEAMAFIVRHGTGIVcvsmkgedlerlelplmvnhkdneEKLCTAFTVsvdakygtttgvsanDRAKTVLALAcrdskpedfnrpghifplkyreggvlkraghteaSVDLAVLAGLEPVAVLCEIvdddgsmarlpkLRQFAQTENLKIISIADLIRYRRKRDRLVELAaaapiptmwgpfkaHCYRSLLDGIEHIAMVkgeigdgqDILVRVHSecltgdifgsarcdCGNQLALAMKQIEAAGRGVLVYLRghegrgiglghklraynlqddghdtveaneelglpvdsreygigAQILRDLGVRTMklmtnnpskyvglkgyglaiagriplltpitmENKRYLETKRAkmghvyglnsgshgdgsisddgnssidgssggvset
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALvsgegdvisypnNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEaiedirqgklVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVsvdakygtttgvsandraKTVLALAcrdskpedfnrpghifpLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLrqfaqtenlkiisiadliRYRRKRDRLVELAAaapiptmwgpfKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEElglpvdsreygIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRiplltpitMENKRYLETKRAKMGHVYGLNSGShgdgsisddgnssidgssggvset
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLnsgshgdgsisddgnssidgssggVSET
*****LYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFP****FDL***TKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDS**EDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYG*****************************
**********************************CLSIKNVGRI**************************************************************GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGL****************************
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNSGSHGDGSISDDG**************
***SNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPN***************************T******D*EFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGL****************************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNSGSHGDGSISDDGNSSIDGSSGGVSET
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query535 2.2.26 [Sep-21-2011]
P47924543 Riboflavin biosynthesis p yes no 0.880 0.867 0.788 0.0
Q0AXM5398 Riboflavin biosynthesis p yes no 0.732 0.984 0.597 1e-133
O66679406 Riboflavin biosynthesis p yes no 0.751 0.990 0.583 1e-133
A4X639400 Riboflavin biosynthesis p yes no 0.742 0.992 0.561 1e-131
C0ZKW2399 Riboflavin biosynthesis p yes no 0.742 0.994 0.591 1e-130
Q9Z734418 Riboflavin biosynthesis p yes no 0.749 0.959 0.565 1e-130
Q5WH08397 Riboflavin biosynthesis p yes no 0.740 0.997 0.567 1e-130
A8LY38420 Riboflavin biosynthesis p yes no 0.738 0.940 0.564 1e-130
A0Q3H7414 Riboflavin biosynthesis p yes no 0.760 0.983 0.544 1e-129
B1MCA4417 Riboflavin biosynthesis p yes no 0.757 0.971 0.572 1e-129
>sp|P47924|RIBBA_ARATH Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2 Back     alignment and function desciption
 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/483 (78%), Positives = 421/483 (87%), Gaps = 12/483 (2%)

Query: 36  LSIK-NVGRIKTAALVSGEGDVISYPNNNKKY---------TAIETQSDTIGFGTLGAEI 85
            SIK N G++K AA++S E D++S+ N N            T    ++D++  GTL A+ 
Sbjct: 46  FSIKTNTGKVK-AAVISREDDLLSFTNGNTPLSNGSLIDDRTEEPLEADSVSLGTLAADS 104

Query: 86  TPKTSD-FFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASL 144
            P  ++ F   DD+F+LD PT GF+SI EAIEDIRQGKLV+VVDDEDRENEGDL+MAA L
Sbjct: 105 APAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQL 164

Query: 145 VTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTT 204
            TPEAMAFIVRHGTGIVCVSMK +DLERL LPLMVN K+NEEKL TAFTV+VDAK+GTTT
Sbjct: 165 ATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVDAKHGTTT 224

Query: 205 GVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLE 264
           GVSA DRA T+L+LA RDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDL VLAGL+
Sbjct: 225 GVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGLD 284

Query: 265 PVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTM 324
           PV VLCEIVDDDGSMARLPKLR+FA   NLK++SIADLIRYRRKRD+LVE A+AA IPTM
Sbjct: 285 PVGVLCEIVDDDGSMARLPKLREFAAENNLKVVSIADLIRYRRKRDKLVERASAARIPTM 344

Query: 325 WGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALA 384
           WGPF A+CYRS+LDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLAL+
Sbjct: 345 WGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALS 404

Query: 385 MKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIG 444
           M+QIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD G DTVEANEELGLPVDSREYGIG
Sbjct: 405 MQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVDSREYGIG 464

Query: 445 AQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHV 504
           AQI+RDLGVRTMKLMTNNP+KYVGLKGYGLAI GR+PLL+ IT ENKRYLETKR KMGH+
Sbjct: 465 AQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETKRTKMGHM 524

Query: 505 YGL 507
           YGL
Sbjct: 525 YGL 527
Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 2EC: 5
>sp|Q0AXM5|RIBBA_SYNWW Riboflavin biosynthesis protein RibBA OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|O66679|RIBBA_AQUAE Riboflavin biosynthesis protein RibBA OS=Aquifex aeolicus (strain VF5) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|A4X639|RIBBA_SALTO Riboflavin biosynthesis protein RibBA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|C0ZKW2|RIBBA_BREBN Riboflavin biosynthesis protein RibBA OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q9Z734|RIBBA_CHLPN Riboflavin biosynthesis protein RibBA OS=Chlamydia pneumoniae GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q5WH08|RIBBA_BACSK Riboflavin biosynthesis protein RibBA OS=Bacillus clausii (strain KSM-K16) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|A8LY38|RIBBA_SALAI Riboflavin biosynthesis protein RibBA OS=Salinispora arenicola (strain CNS-205) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|A0Q3H7|RIBBA_CLONN Riboflavin biosynthesis protein RibBA OS=Clostridium novyi (strain NT) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|B1MCA4|RIBBA_MYCA9 Riboflavin biosynthesis protein RibBA OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ribBA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
255587021531 GTP cyclohydrolase II, putative [Ricinus 0.938 0.945 0.791 0.0
225465770559 PREDICTED: riboflavin biosynthesis prote 0.970 0.928 0.752 0.0
296087438 845 unnamed protein product [Vitis vinifera] 0.970 0.614 0.752 0.0
33308405539 GTP cyclohydrolase II/3,4-dihydroxy-2-bu 0.985 0.977 0.762 0.0
224096145449 predicted protein [Populus trichocarpa] 0.831 0.991 0.889 0.0
359480493534 PREDICTED: riboflavin biosynthesis prote 0.951 0.953 0.756 0.0
298561264557 GTP cyclohydrolase II/3,4-dihydroxy-2-bu 0.912 0.876 0.777 0.0
224055964552 predicted protein [Populus trichocarpa] 0.927 0.898 0.752 0.0
356525856544 PREDICTED: riboflavin biosynthesis prote 0.958 0.943 0.749 0.0
356554732544 PREDICTED: riboflavin biosynthesis prote 0.887 0.873 0.786 0.0
>gi|255587021|ref|XP_002534102.1| GTP cyclohydrolase II, putative [Ricinus communis] gi|223525850|gb|EEF28284.1| GTP cyclohydrolase II, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/533 (79%), Positives = 453/533 (84%), Gaps = 31/533 (5%)

Query: 1   MSTSNLYCSSMALLVREPQGG-SCLHFVKPFSADG--------------CLSIKNVGRIK 45
           M++  LY SS        QGG   LH   PF+ +               C  +K V R++
Sbjct: 1   MASVYLYISSFN--PSPLQGGYKGLHCAYPFAPNDLTDLVVSSNPTRKLCFGLKGVSRVR 58

Query: 46  TAALVSGEGDVISYPNNN----------KKYT---AIETQSDTIGFGTLGAEITPKTSDF 92
            A+LVSGEGD++S  NNN           K+     +E Q D IGFGTL AEITP TS F
Sbjct: 59  -ASLVSGEGDLLSCHNNNGAPGQDTIVSNKFNPSPGLELQPDAIGFGTLSAEITPTTSAF 117

Query: 93  FPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAF 152
           FP+DDE+DLD PT GFASI EAIEDIRQGKLVIVVDDEDRENEGDLIMAAS  TPE MAF
Sbjct: 118 FPDDDEYDLDHPTDGFASIPEAIEDIRQGKLVIVVDDEDRENEGDLIMAASKATPEVMAF 177

Query: 153 IVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRA 212
           IV+HGTGIVCVSMKGEDLERLELPLMV HK+NEEKLCTAFTV+VDAK+GTTTGVSA+DRA
Sbjct: 178 IVKHGTGIVCVSMKGEDLERLELPLMVTHKENEEKLCTAFTVTVDAKHGTTTGVSAHDRA 237

Query: 213 KTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEI 272
            TVLALA RDSKP DFNRPGHIFPLKYREGGVLKRAGHTEASVDL++LAGLEPVAVLCEI
Sbjct: 238 ATVLALASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLSMLAGLEPVAVLCEI 297

Query: 273 VDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHC 332
           VDDDGSMARLP+LRQFAQTENLKIISIADLIRYRRKRDRLVELAA APIPTMWGPF+A+C
Sbjct: 298 VDDDGSMARLPRLRQFAQTENLKIISIADLIRYRRKRDRLVELAATAPIPTMWGPFEAYC 357

Query: 333 YRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG 392
           YRSLLDGIEHIAMVKGEIGDG+DILVRVHSECLTGDIFGSARCDCGNQLALAM QIEAAG
Sbjct: 358 YRSLLDGIEHIAMVKGEIGDGKDILVRVHSECLTGDIFGSARCDCGNQLALAMTQIEAAG 417

Query: 393 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLG 452
           RG+LVYLRGHEGRGIGLGHKLRA NLQDDG DTVEANEELGLPVDSREYG+GAQILRDLG
Sbjct: 418 RGILVYLRGHEGRGIGLGHKLRACNLQDDGRDTVEANEELGLPVDSREYGLGAQILRDLG 477

Query: 453 VRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY 505
           V TM+LMTNNP+KYVGLKGYGLAIAGR+PLLTPIT EN RYLETKR KMGH+Y
Sbjct: 478 VHTMRLMTNNPAKYVGLKGYGLAIAGRVPLLTPITRENMRYLETKREKMGHIY 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225465770|ref|XP_002267374.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087438|emb|CBI34027.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|33308405|gb|AAQ03091.1| GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Malus x domestica] Back     alignment and taxonomy information
>gi|224096145|ref|XP_002310549.1| predicted protein [Populus trichocarpa] gi|222853452|gb|EEE90999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359480493|ref|XP_002266093.2| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Vitis vinifera] gi|297741836|emb|CBI33149.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|298561264|dbj|BAJ09646.1| GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|224055964|ref|XP_002298707.1| predicted protein [Populus trichocarpa] gi|222845965|gb|EEE83512.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525856|ref|XP_003531537.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356554732|ref|XP_003545697.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
TAIR|locus:2173373543 GCH "GTP cyclohydrolase II" [A 0.878 0.865 0.790 2.8e-201
TAIR|locus:2041253476 RIBA2 "homolog of ribA 2" [Ara 0.798 0.897 0.744 2.2e-169
TIGR_CMR|CHY_1473401 CHY_1473 "3,4-dihydroxy-2-buta 0.742 0.990 0.608 1.1e-128
TIGR_CMR|GSU_1690400 GSU_1690 "3,4-dihydroxy-2-buta 0.734 0.982 0.578 1.1e-119
TIGR_CMR|BA_4333397 BA_4333 "3,4-dihydroxy-2-butan 0.740 0.997 0.57 1.6e-116
UNIPROTKB|P0A5V0425 ribBA "Riboflavin biosynthesis 0.732 0.922 0.572 5.6e-116
TIGR_CMR|DET_1188403 DET_1188 "3,4-dihydroxy-2-buta 0.734 0.975 0.555 4.1e-113
TIGR_CMR|CBU_0647387 CBU_0647 "riboflavin biosynthe 0.712 0.984 0.512 3.1e-99
UNIPROTKB|Q9KPU3369 VC_2269 "3,4-dihydroxy-2-butan 0.663 0.962 0.476 5.5e-77
TIGR_CMR|VC_2269369 VC_2269 "3,4-dihydroxy-2-butan 0.663 0.962 0.476 5.5e-77
TAIR|locus:2173373 GCH "GTP cyclohydrolase II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1948 (690.8 bits), Expect = 2.8e-201, P = 2.8e-201
 Identities = 381/482 (79%), Positives = 421/482 (87%)

Query:    37 SIK-NVGRIKTAALVSGEGDVISYPNNNKKY---------TAIETQSDTIGFGTLGAEIT 86
             SIK N G++K AA++S E D++S+ N N            T    ++D++  GTL A+  
Sbjct:    47 SIKTNTGKVK-AAVISREDDLLSFTNGNTPLSNGSLIDDRTEEPLEADSVSLGTLAADSA 105

Query:    87 PKTSD-FFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLV 145
             P  ++ F   DD+F+LD PT GF+SI EAIEDIRQGKLV+VVDDEDRENEGDL+MAA L 
Sbjct:   106 PAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQLA 165

Query:   146 TPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTG 205
             TPEAMAFIVRHGTGIVCVSMK +DLERL LPLMVN K+NEEKL TAFTV+VDAK+GTTTG
Sbjct:   166 TPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVDAKHGTTTG 225

Query:   206 VSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP 265
             VSA DRA T+L+LA RDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDL VLAGL+P
Sbjct:   226 VSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGLDP 285

Query:   266 VAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMW 325
             V VLCEIVDDDGSMARLPKLR+FA   NLK++SIADLIRYRRKRD+LVE A+AA IPTMW
Sbjct:   286 VGVLCEIVDDDGSMARLPKLREFAAENNLKVVSIADLIRYRRKRDKLVERASAARIPTMW 345

Query:   326 GPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAM 385
             GPF A+CYRS+LDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLAL+M
Sbjct:   346 GPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALSM 405

Query:   386 KQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGA 445
             +QIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD G DTVEANEELGLPVDSREYGIGA
Sbjct:   406 QQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVDSREYGIGA 465

Query:   446 QILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKRYLETKRAKMGHVY 505
             QI+RDLGVRTMKLMTNNP+KYVGLKGYGLAI GR+PLL+ IT ENKRYLETKR KMGH+Y
Sbjct:   466 QIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETKRTKMGHMY 525

Query:   506 GL 507
             GL
Sbjct:   526 GL 527
GO:0003935 "GTP cyclohydrolase II activity" evidence=IEA;IGI;ISS
GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase activity" evidence=IEA;IGI;ISS
GO:0009231 "riboflavin biosynthetic process" evidence=IEA;IGI;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016020 "membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0048767 "root hair elongation" evidence=RCA
TAIR|locus:2041253 RIBA2 "homolog of ribA 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1473 CHY_1473 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1690 GSU_1690 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4333 BA_4333 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P0A5V0 ribBA "Riboflavin biosynthesis protein RibBA" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1188 DET_1188 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0647 CBU_0647 "riboflavin biosynthesis protein RibA" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPU3 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2269 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9PLJ5RIBBA_CHLMU3, ., 5, ., 4, ., 2, 50.52890.73830.9316yesno
B0KAI2RIBBA_THEP33, ., 5, ., 4, ., 2, 50.56030.72890.9848yesno
C5D3N0RIBBA_GEOSW3, ., 5, ., 4, ., 2, 50.56170.73450.9899yesno
B0K0Y9RIBBA_THEPX3, ., 5, ., 4, ., 2, 50.56030.72890.9848yesno
C3LIX7RIBBA_BACAC3, ., 5, ., 4, ., 2, 50.570.74010.9974yesno
Q5WH08RIBBA_BACSK3, ., 5, ., 4, ., 2, 50.56750.74010.9974yesno
C3P7P7RIBBA_BACAA3, ., 5, ., 4, ., 2, 50.570.74010.9974yesno
A4TC13RIBBA_MYCGI3, ., 5, ., 4, ., 2, 50.54770.76440.9669yesno
Q635H0RIBBA_BACCZ3, ., 5, ., 4, ., 2, 50.570.74010.9974yesno
Q5YTP3RIBBA_NOCFA3, ., 5, ., 4, ., 2, 50.58540.73640.9516yesno
A0RIB3RIBBA_BACAH3, ., 5, ., 4, ., 2, 50.570.74010.9974yesno
B7IWM5RIBBA_BACC23, ., 5, ., 4, ., 2, 50.56750.74010.9974yesno
A4QEG9RIBBA_CORGB3, ., 5, ., 4, ., 2, 50.56780.73080.9265yesno
A5U2B7RIBBA_MYCTA3, ., 5, ., 4, ., 2, 50.57250.73270.9223yesno
C0ZKW2RIBBA_BREBN3, ., 5, ., 4, ., 2, 50.59100.74200.9949yesno
P0A5V0RIBBA_MYCTU3, ., 5, ., 4, ., 2, 50.57250.73270.9223yesno
P0A5V1RIBBA_MYCBO3, ., 5, ., 4, ., 2, 50.57250.73270.9223yesno
A4SFY4RIBBA_PROVI3, ., 5, ., 4, ., 2, 50.55520.75320.9829yesno
A4X639RIBBA_SALTO3, ., 5, ., 4, ., 2, 50.56140.74200.9925yesno
Q818X6RIBBA_BACCR3, ., 5, ., 4, ., 2, 50.56750.74010.9974yesno
Q9Z734RIBBA_CHLPN3, ., 5, ., 4, ., 2, 50.56570.74950.9593yesno
B7JLW6RIBBA_BACC03, ., 5, ., 4, ., 2, 50.56750.74010.9974yesno
A1KIK4RIBBA_MYCBP3, ., 5, ., 4, ., 2, 50.57250.73270.9223yesno
C1AN60RIBBA_MYCBT3, ., 5, ., 4, ., 2, 50.57250.73270.9223yesno
O66679RIBBA_AQUAE3, ., 5, ., 4, ., 2, 50.58370.75140.9901yesno
B7HAY4RIBBA_BACC43, ., 5, ., 4, ., 2, 50.5650.74010.9974yesno
P47924RIBBA_ARATH3, ., 5, ., 4, ., 2, 50.78880.88030.8674yesno
C1EQY5RIBBA_BACC33, ., 5, ., 4, ., 2, 50.570.74010.9974yesno
B7HNM8RIBBA_BACC73, ., 5, ., 4, ., 2, 50.56750.74010.9974yesno
Q3B2I6RIBBA_PELLD3, ., 5, ., 4, ., 2, 50.57350.74200.9706yesno
P17620RIBBA_BACSU3, ., 5, ., 4, ., 2, 50.55020.73450.9874yesno
Q0AXM5RIBBA_SYNWW3, ., 5, ., 4, ., 2, 50.59790.73270.9849yesno
A8LY38RIBBA_SALAI3, ., 5, ., 4, ., 2, 50.56420.73830.9404yesno
Q8NQ52RIBBA_CORGL3, ., 5, ., 4, ., 2, 50.56780.73080.9265yesno
B9IWX4RIBBA_BACCQ3, ., 5, ., 4, ., 2, 50.56750.74010.9974yesno
A9VG50RIBBA_BACWK3, ., 5, ., 4, ., 2, 50.570.74010.9974yesno
B1MCA4RIBBA_MYCA93, ., 5, ., 4, ., 2, 50.57240.75700.9712yesno
A1T8K1RIBBA_MYCVP3, ., 5, ., 4, ., 2, 50.570.73270.9267yesno
Q0S0K2RIBBA_RHOSR3, ., 5, ., 4, ., 2, 50.57960.73640.9448yesno
C0ZZE5RIBBA_RHOE43, ., 5, ., 4, ., 2, 50.57960.73640.9292yesno
A0Q3H7RIBBA_CLONN3, ., 5, ., 4, ., 2, 50.54470.76070.9830yesno
B2HP67RIBBA_MYCMM3, ., 5, ., 4, ., 2, 50.580.73270.9223yesno
Q81MB6RIBBA_BACAN3, ., 5, ., 4, ., 2, 50.570.74010.9974yesno
Q731I5RIBBA_BACC13, ., 5, ., 4, ., 2, 50.56750.74010.9974yesno
A7GSD5RIBBA_BACCN3, ., 5, ., 4, ., 2, 50.5550.74010.9974yesno
A0QI09RIBBA_MYCA13, ., 5, ., 4, ., 2, 50.5750.73270.9223yesno
A0PPL6RIBBA_MYCUA3, ., 5, ., 4, ., 2, 50.57750.73270.9223yesno
Q6HE54RIBBA_BACHK3, ., 5, ., 4, ., 2, 50.570.74010.9974yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.1.99.120.979
3rd Layer3.5.40.983
3rd Layer4.1.990.983
3rd Layer3.5.4.250.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VII.1682.1
GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC-3.5.4.25) (449 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.VII.325.1
6,7-dimethyl-8-ribityllumazine synthase (180 aa)
• •  •• 0.991
gw1.II.3064.1
diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC-3.5.4.26) (316 aa)
• •  •• 0.986
eugene3.01700021
6,7-dimethyl-8-ribityllumazine synthase (221 aa)
• •  •• 0.984
estExt_fgenesh4_pg.C_LG_I0458
hypothetical protein (204 aa)
     •• 0.809
eugene3.00031452
hypothetical protein (211 aa)
     •• 0.802
gw1.XVIII.1081.1
annotation not avaliable (148 aa)
     •  0.800
gw1.XVI.2051.1
annotation not avaliable (265 aa)
     •  0.800
gw1.XV.93.1
hypothetical protein (1112 aa)
     •  0.800
gw1.XV.3381.1
hypothetical protein (519 aa)
     •  0.800
gw1.XII.1350.1
hypothetical protein (612 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
PLN02831450 PLN02831, PLN02831, Bifunctional GTP cyclohydrolas 0.0
PRK09311402 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-b 0.0
PRK09319 555 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-b 0.0
PRK14019367 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-b 1e-138
cd00641193 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (R 1e-110
PRK09318387 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-b 1e-109
pfam00926193 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 1e-108
PRK09314339 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-b 1e-104
COG0108203 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphat 1e-104
pfam00925169 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II 5e-95
COG0807193 COG0807, RibA, GTP cyclohydrolase II [Coenzyme met 1e-94
PRK12485369 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-b 3e-94
PRK00393197 PRK00393, ribA, GTP cyclohydrolase II; Reviewed 6e-92
TIGR00506199 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosph 7e-84
PRK03353217 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phospha 2e-82
TIGR00505191 TIGR00505, ribA, GTP cyclohydrolase II 4e-79
PRK01792214 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phospha 4e-74
PRK00910218 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phospha 3e-63
PRK00014230 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phospha 1e-61
PRK08815375 PRK08815, PRK08815, GTP cyclohydrolase; Provisiona 3e-50
PRK05773219 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-pho 1e-21
PRK07198418 PRK07198, PRK07198, hypothetical protein; Validate 2e-05
>gnl|CDD|215445 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase Back     alignment and domain information 
 Score =  898 bits (2323), Expect = 0.0
 Identities = 365/450 (81%), Positives = 402/450 (89%), Gaps = 1/450 (0%)

Query: 74  DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRE 133
           D+  FGTL AEITP T DFF +D E D DRPT+GF+SI+EA+EDIRQGK V+VVDDEDRE
Sbjct: 1   DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRE 60

Query: 134 NEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFT 193
           NEGDLIMAASLVTPEAMAF+V+HG+GIVCVSMKGEDL+RL LPLMV  K+NEEK+ TAFT
Sbjct: 61  NEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFT 120

Query: 194 VSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEA 253
           V+VDAK+GTTTGVSA+DRAKT+LALA  DSKPEDF RPGHIFPL+YREGGVLKRAGHTEA
Sbjct: 121 VTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEA 180

Query: 254 SVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL 312
           +VDLAVLAGL PV VLCEIV+D DGSMARLP+LR+FA+   LKIISIADLIRYRRKR++L
Sbjct: 181 AVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240

Query: 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGS 372
           VE  A A +PT WG F A+CYRS LDGIEHIA VKG+IGDGQD+LVRVHSECLTGDIFGS
Sbjct: 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGS 300

Query: 373 ARCDCGNQLALAMKQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEEL 432
           ARCDCGNQLALAM+ IE AGRGVLVYLRGHEGRGIGLGHKLRAYNLQD+G DTVEANEEL
Sbjct: 301 ARCDCGNQLALAMQLIEKAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEEL 360

Query: 433 GLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGYGLAIAGRIPLLTPITMENKR 492
           GLPVDSREYGIGAQILRDLGVRTM+LMTNNP+KY GLKGYGLA+ GR+PLLTPIT ENKR
Sbjct: 361 GLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVPLLTPITKENKR 420

Query: 493 YLETKRAKMGHVYGLNSGSHGDGSISDDGN 522
           YLETKR KMGHVYG + G H  G  S + N
Sbjct: 421 YLETKRTKMGHVYGSDLGGHVSGLESAETN 450

Length = 450
>gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>gnl|CDD|238348 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA) Back     alignment and domain information
>gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|216196 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II Back     alignment and domain information
>gnl|CDD|223878 COG0807, RibA, GTP cyclohydrolase II [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>gnl|CDD|234745 PRK00393, ribA, GTP cyclohydrolase II; Reviewed Back     alignment and domain information
>gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|129596 TIGR00505, ribA, GTP cyclohydrolase II Back     alignment and domain information
>gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|236340 PRK08815, PRK08815, GTP cyclohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated Back     alignment and domain information
>gnl|CDD|235959 PRK07198, PRK07198, hypothetical protein; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 535
PLN02831450 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy- 100.0
PRK09319 555 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09311402 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09318387 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK12485369 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK14019367 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09314339 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK08815375 GTP cyclohydrolase; Provisional 100.0
COG0108203 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK00910218 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK01792214 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK00014230 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
TIGR00506199 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PF00926194 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphat 100.0
KOG1284357 consensus Bifunctional GTP cyclohydrolase II/3,4-d 100.0
COG0807193 RibA GTP cyclohydrolase II [Coenzyme metabolism] 100.0
PRK03353217 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK05773219 3,4-dihydroxy-2-butanone 4-phosphate synthase; Val 100.0
PRK00393197 ribA GTP cyclohydrolase II; Reviewed 100.0
TIGR00505191 ribA GTP cyclohydrolase II. Several members of the 100.0
PF00925169 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: 100.0
cd00641193 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP 100.0
PRK07198418 hypothetical protein; Validated 100.0
KOG1284357 consensus Bifunctional GTP cyclohydrolase II/3,4-d 99.66
PRK14481 331 dihydroxyacetone kinase subunit DhaK; Provisional 83.72
TIGR02361 574 dak_ATP dihydroxyacetone kinase, ATP-dependent. Th 82.63
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase Back     alignment and domain information 
Probab=100.00  E-value=3.5e-140  Score=1116.10  Aligned_cols=444  Identities=82%  Similarity=1.270  Sum_probs=432.4

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHH
Q 009423           74 DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFI  153 (535)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm  153 (535)
                      |+++|||++||++|++++||.++.+.+++.+.+.|++|++||++||+|+||||+||++||||||||+|||.+|||.||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm   80 (450)
T PLN02831          1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFL   80 (450)
T ss_pred             CCccccccccCCcccccccccccccccccCcccccCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHH
Confidence            57899999999999999999999999999997789999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcEEeecChhhHhhcCCCcccccCCCCCCcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCC
Q 009423          154 VRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGH  233 (535)
Q Consensus       154 ~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~~~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGH  233 (535)
                      ++|++|+||+||++++|++|+||+|+....|.+..+++||||||+++|++|||||.|||+|||+||+|.++|+||++|||
T Consensus        81 ~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGH  160 (450)
T PLN02831         81 VKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGH  160 (450)
T ss_pred             HHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCc
Confidence            99999999999999999999999999854477777899999999998999999999999999999999999999999999


Q ss_pred             ccceeeccCCcccccchhHHHHHHHHHcCCCccEEEEEEeCC-CCCccChhHHHHHHHhcCCceecHHHHHHHHHhhhhh
Q 009423          234 IFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL  312 (535)
Q Consensus       234 VfPL~a~~gGvl~R~GhtEAAvDLarLAGl~PaaVicEil~~-dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~l  312 (535)
                      ||||++++|||++|+|||||||||||||||.|++|||||+++ ||+||+.+++.+||++|+||+++|+|||+||+++|++
T Consensus       161 vfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~l  240 (450)
T PLN02831        161 IFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL  240 (450)
T ss_pred             ccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999999995 8999999999999999999999999999999999999


Q ss_pred             hhhccccccCCCcccEEEEEEEeCCCCceEEEEEeccCCCCCcceEEEccCCcccccccCCCCCChHHHHHHHHHHHHhC
Q 009423          313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEAAG  392 (535)
Q Consensus       313 V~r~~~~~lpT~~G~F~~~~yr~~~dg~eHvALv~Gdi~~~~~vLVRVHSeCltgDvFGS~rCDCg~QL~~AL~~I~~~G  392 (535)
                      |+++.+.+|||.||+|++++|++..++.||+||++|++..++||||||||+|+|||+|||.+|||+|||+.||++|+++|
T Consensus       241 V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv~Gd~~~~~~vLVRVHSec~tgDvfgs~rCdCg~qL~~Al~~I~~~G  320 (450)
T PLN02831        241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVKGDIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLALAMQLIEKAG  320 (450)
T ss_pred             ccccceeeeecCCCCEEEEEEEeCCCCeEEEEEEeCCcCCCCCceEEEeccCCHHHHhcCCCCCCcchHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             CeEEEEEeCCCCCCcchHHHhhhhhcccCCCCchhhhhhcCCCCCccChhHHHHHHHHcCCCeeecccCCcccccccccC
Q 009423          393 RGVLVYLRGHEGRGIGLGHKLRAYNLQDDGHDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPSKYVGLKGY  472 (535)
Q Consensus       393 ~GVlVYLr~qEGRGiGL~~Kl~ay~LQd~g~DTveAn~~LG~~~D~RdYgigAQILrdLGV~kIrLLTNNP~K~~aL~g~  472 (535)
                      +|||||||+||||||||.+|+++|.+|++|+||++||.+||++.|.|+||+|||||++|||++||||||||.|+.+|++|
T Consensus       321 ~GVlvYLr~qegrgigl~~Kl~ay~lq~~g~dt~eAn~~lg~~~D~RdygigAqIL~dLGI~~irLLTNNp~K~~~L~~~  400 (450)
T PLN02831        321 RGVLVYLRGHEGRGIGLGHKLRAYNLQDEGRDTVEANEELGLPVDSREYGIGAQILRDLGVRTMRLMTNNPAKYTGLKGY  400 (450)
T ss_pred             CEEEEEEcCCCcccchHHHHHHHHhcccccCcchhhhhhccCcccceehHHHHHHHHHcCCCEEEECCCCHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEeecCCCCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 009423          473 GLAIAGRIPLLTPITMENKRYLETKRAKMGHVYGLNSGSHGDGSI  517 (535)
Q Consensus       473 GIeV~ervpl~~~~~~~n~~YL~tK~~k~gH~l~~~~~~~~~~~~  517 (535)
                      ||+|++++|++++++++|++||+||++||||+|..++.+++++.-
T Consensus       401 GieVve~vp~~~~~~~~n~~Yl~tK~~k~gH~l~~~~~~~~~~~~  445 (450)
T PLN02831        401 GLAVVGRVPLLTPITKENKRYLETKRTKMGHVYGSDLGGHVSGLE  445 (450)
T ss_pred             CCEEEEEecccCCCChhhHHHHHHHHHHhCCcCCCCCCCcccccc
Confidence            999999999999999999999999999999999999988886643

>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK08815 GTP cyclohydrolase; Provisional Back     alignment and domain information
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4 Back     alignment and domain information
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism] Back     alignment and domain information
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated Back     alignment and domain information
>PRK00393 ribA GTP cyclohydrolase II; Reviewed Back     alignment and domain information
>TIGR00505 ribA GTP cyclohydrolase II Back     alignment and domain information
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin Back     alignment and domain information
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA) Back     alignment and domain information
>PRK07198 hypothetical protein; Validated Back     alignment and domain information
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional Back     alignment and domain information
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
1iez_A217 Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Ph 3e-55
1g57_A217 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 4e-55
3h07_A220 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 2e-54
3lqu_A217 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 2e-54
3mgz_A206 Crystal Structure Of Dhbps Domain Of Bi-Functional 5e-53
3mk5_A212 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 5e-53
1tks_A204 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 2e-51
2bz0_A196 Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii 1e-44
1k49_A233 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 2e-44
2bz1_A196 Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase 1e-43
1pvw_A227 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From 8e-26
1pvy_A227 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From 1e-24
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Riboflavin Biosynthesis Length = 217 Back     alignment and structure 
Iteration: 1

 Score =  212 bits (540), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 141/204 (69%), Gaps = 2/204 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
           F  +  A+  +R+G+ V+V+DDEDRENEGD+I  A  +T E MA  +RHG+GIVC+ +  
Sbjct: 13  FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
           +  ++L+LP+MV  ++N     T FTV+++A  G TTGVSA DR  TV A     +KP D
Sbjct: 73  DRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 130
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
            NRPGH+FPL+ + GGVL R GHTEA++DL  LAG +P  VLCE+ +DDG+MAR P+  +
Sbjct: 131 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 190
Query: 288 FAQTENLKIISIADLIRYRRKRDR 311
           FA   N+ +++I DL+ YR+  +R
Sbjct: 191 FANKHNMALVTIEDLVAYRQAHER 214
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Length = 217 Back     alignment and structure
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From Yersinia Pestis Co92 Length = 220 Back     alignment and structure
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Complexed With Ribulose-5 Phosphate Length = 217 Back     alignment and structure
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional DhbpsGTP Cyclohydrolase Ii From Mycobacterium Tuberculosis At Ph 4.0 Length = 206 Back     alignment and structure
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Domain From Mycobacterium Tuberculosis With Sulfate And Zinc At Ph 4.00 Length = 212 Back     alignment and structure
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Candida Albicans Length = 204 Back     alignment and structure
>pdb|2BZ0|A Chain A, Crystal Structure Of E. Coli Gtp Cyclohydrolase Ii In Complex With Gtp Analogue, Gmpcpp, And Zinc Length = 196 Back     alignment and structure
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase (Cation Free Form) Length = 233 Back     alignment and structure
>pdb|2BZ1|A Chain A, Crystal Structure Of Apo E. Coli Gtp Cyclohydrolase Ii Length = 196 Back     alignment and structure
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii Length = 227 Back     alignment and structure
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii In Complex With Ribulose 5-Phosphate Length = 227 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
1g57_A217 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-131
1tks_A204 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 1e-130
3mio_A206 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-129
1k4i_A233 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 1e-129
2bz1_A196 GTP cyclohydrolase II; riboflavin biosynthesis, ca 1e-126
1snn_A227 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-117
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-15
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A Length = 217 Back     alignment and structure
 Score =  380 bits (978), Expect = e-131
 Identities = 100/217 (46%), Positives = 142/217 (65%), Gaps = 2/217 (0%)

Query: 97  DEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRH 156
            +  L      F  +  A+  +R+G+ V+V+DDEDRENEGD+I  A  +T E MA  +RH
Sbjct: 2   AQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRH 61

Query: 157 GTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVL 216
           G+GIVC+ +  +  ++L+LP+MV +  N     T FTV+++A  G TTGVSA DR  TV 
Sbjct: 62  GSGIVCLCITEDRRKQLDLPMMVEN--NTSAYGTGFTVTIEAAEGVTTGVSAADRITTVR 119

Query: 217 ALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDD 276
           A     +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAG +P  VLCE+ +DD
Sbjct: 120 AAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDD 179

Query: 277 GSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLV 313
           G+MAR P+  +FA   N+ +++I DL+ YR+  +R  
Sbjct: 180 GTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKA 216
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Length = 204 Back     alignment and structure
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} PDB: 3mgz_A 3mk5_A Length = 206 Back     alignment and structure
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Length = 233 Back     alignment and structure
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Length = 196 Back     alignment and structure
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Length = 227 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
1k4i_A233 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 100.0
3mio_A206 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
1tks_A204 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 100.0
1snn_A227 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
1g57_A217 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
2bz1_A196 GTP cyclohydrolase II; riboflavin biosynthesis, ca 100.0
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Back     alignment and structure
Probab=100.00  E-value=2.2e-77  Score=585.00  Aligned_cols=208  Identities=48%  Similarity=0.736  Sum_probs=201.2

Q ss_pred             CCCcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCC
Q 009423          105 TKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDN  184 (535)
Q Consensus       105 ~~~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n  184 (535)
                      .+.|++|++||++||+|+||||+||++||||||||+|||++||+.||||++|++|+||+||++++|++|+||+|+..  |
T Consensus         9 ~~~~~~ie~Ai~alr~G~~Viv~DdedREnEgDLi~aAe~~T~e~i~fm~r~~~GliC~~lt~e~~~~L~Lp~Mv~~--n   86 (233)
T 1k4i_A            9 KSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTH--N   86 (233)
T ss_dssp             ---CCCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS--C
T ss_pred             CCchhHHHHHHHHHHCCCeEEEEeCCCCCcceeEEEEhhhCCHHHHHHHHHcCCCCEEEEcCHHHHhhCCCcccccc--c
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999987  8


Q ss_pred             CCCcccceEEEeecCC-CCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCC
Q 009423          185 EEKLCTAFTVSVDAKY-GTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGL  263 (535)
Q Consensus       185 ~~~~~taFtVsVDa~~-g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl  263 (535)
                      ++.++|+|||||||++ |++|||||.|||+||++|+++.++|+||+||||||||+|++||||+|+|||||||||||||||
T Consensus        87 ~~~~~TaFTVsVda~~~g~tTGISA~DRa~Tir~la~~~~~p~df~rPGHvfPL~A~~GGVl~R~GHTEAaVDLarLAGl  166 (233)
T 1k4i_A           87 ADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGK  166 (233)
T ss_dssp             CCSSCCCBBCCEEECSTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTHHHHCCSHHHHHHHHHHHTTC
T ss_pred             CCCCCCCeEEEEEcccCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceeeecCCCeeccCChHHHHHHHHHHcCC
Confidence            8889999999999987 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEeCC-----------CCCccChhHHHHHHHhcCCceecHHHHHHHHHhhhhhhh
Q 009423          264 EPVAVLCEIVDD-----------DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVE  314 (535)
Q Consensus       264 ~PaaVicEil~~-----------dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E~lV~  314 (535)
                      .|++||||||++           ||+|||.+++.+||++|+||++||+|||+||+++|++|+
T Consensus       167 ~PagVicEi~~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iitI~dLi~yr~~~e~~v~  228 (233)
T 1k4i_A          167 RPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLE  228 (233)
T ss_dssp             CSBEEEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEEHHHHHHHHHHHHCCC-
T ss_pred             CceEEEEEeCCCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHhcCCeec
Confidence            999999999999           999999999999999999999999999999999998875
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A Back     alignment and structure
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Back     alignment and structure
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Back     alignment and structure
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A Back     alignment and structure
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 535
d1g57a_209 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 3e-78
d1snna_219 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 5e-78
d1k4ia_216 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 4e-75
d1tksa_202 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 9e-75
d2bz1a1174 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {E 1e-57
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
domain: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
species: Escherichia coli [TaxId: 562]

 Score =  242 bits (619), Expect = 3e-78
 Identities = 97/203 (47%), Positives = 139/203 (68%), Gaps = 2/203 (0%)

Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
           F  +  A+  +R+G+ V+V+DDEDRENEGD+I  A  +T E MA  +RHG+GIVC+ +  
Sbjct: 9   FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 68

Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
           +  ++L+LP+MV +  +     T FTV+++A  G TTGVSA DR  TV A     +KP D
Sbjct: 69  DRRKQLDLPMMVENNTS--AYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 126

Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
            NRPGH+FPL+ + GGVL R GHTEA++DL  LAG +P  VLCE+ +DDG+MAR P+  +
Sbjct: 127 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 186

Query: 288 FAQTENLKIISIADLIRYRRKRD 310
           FA   N+ +++I DL+ YR+  +
Sbjct: 187 FANKHNMALVTIEDLVAYRQAHE 209
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 219 Back     information, alignment and structure
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Length = 216 Back     information, alignment and structure
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Length = 202 Back     information, alignment and structure
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
d1g57a_209 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1tksa_202 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1k4ia_216 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1snna_219 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d2bz1a1174 GTP cyclohydrolase II, RibA {Escherichia coli [Tax 100.0
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
domain: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-72  Score=542.67  Aligned_cols=203  Identities=48%  Similarity=0.869  Sum_probs=194.4

Q ss_pred             CCcccHHHHHHHHHcCcEEEEEeCCCCCCcccEEEEcCCCCHHHHHHHHHhCCCcEEeecChhhHhhcCCCcccccCCCC
Q 009423          106 KGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNE  185 (535)
Q Consensus       106 ~~~~~Ie~Ai~aLr~G~~Vvv~Dde~REnEgdLV~AAe~~Tpe~v~fm~r~~~Glicva~~~~~~~rL~Lp~M~~~~~n~  185 (535)
                      ..|++|++||++||+|+||||+||++||||||||++|+.+||+.|+||++|++|+||+||++++|++|+||+|+..  |.
T Consensus         7 ~~~~~ie~ai~alk~G~~Viv~Dd~~RE~EgDlv~~Ae~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--~~   84 (209)
T d1g57a_           7 TPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVEN--NT   84 (209)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS--CC
T ss_pred             CchhhHHHHHHHHHCCCEEEEEECCCCCCcccEEEEHHHCCHHHHHHHHHhCCCCEEEcccHHHHhcCCCCCcccc--cc
Confidence            3588999999999999999999999999999999999999999999999999999999999999999999999987  77


Q ss_pred             CCcccceEEEeecCCCCCCCCChhhHHHHHHHHhcCCCCCCCccCCCCccceeeccCCcccccchhHHHHHHHHHcCCCc
Q 009423          186 EKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP  265 (535)
Q Consensus       186 ~~~~taFtVsVDa~~g~tTGISA~DRA~Tir~LA~p~s~p~Df~rPGHVfPL~a~~gGvl~R~GhtEAAvDLarLAGl~P  265 (535)
                      +.++++|+||||+++|++|||||.|||+||+.|++++++|+||++|||||||++++|||++|+||||||||||+|||+.|
T Consensus        85 ~~~~~~ftvsvd~~~g~tTGISa~dRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~gGv~~R~GHTEaavdL~~lAGl~P  164 (209)
T d1g57a_          85 SAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKP  164 (209)
T ss_dssp             CTTCCCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSCS
T ss_pred             cccCCcceEEEEecCCccccccHHHHHHHHHHhhccCCCHHHhcCCceeceeeeccCCccccchHHHHHHHHHHhcCCCC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCCCCccChhHHHHHHHhcCCceecHHHHHHHHHhhh
Q 009423          266 VAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD  310 (535)
Q Consensus       266 aaVicEil~~dG~ma~~~el~~fA~~h~L~ivsi~DLi~yr~~~E  310 (535)
                      ++||||||++||+||+.+++++||++|+||+|+|+|||+||+++|
T Consensus       165 ~avi~Eil~~dG~~~~~~~~~~fA~~~~l~~isi~dli~yr~~~e  209 (209)
T d1g57a_         165 AGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHE  209 (209)
T ss_dssp             CEEEEEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC
T ss_pred             eEEEEEEecCCCcccCHHHHHHHHHHcCCCEEEHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999876
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Back     information, alignment and structure
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Back     information, alignment and structure
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure