Citrus Sinensis ID: 009425

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY
cccccccccccEEEEccccHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEcccHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHccHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccEEEEEEEcccccccccccccccccEEEEcccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccccEEEEccccHHHHHHHHHccEEccccccccccccccccEEEEEEEcccccEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccc
ccccEcccccEEEEEEcccccEEccHHHHHHHHHHHHHHHHHHHHHHcccccccHEEEcccccEEEEccccHHHHHccccHHHHHHHHHHHHHcccHccccccHEEEEHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccEEcccEEEEcEEEcccccccccccEEEEEEEEEEcccEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEccccccEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHEEccccc
malafdefgrpfILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTslgpkgmdkmlqspdgdvtitndgatILEQMDVDNQIAKLMVELSrsqdyeigdgtTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVegkvggrledtELIYGITvdkdmshpqmpkriENAKIAiltcpfeppkpktkhkvdidTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLmhrnlpavrwvGGVELELIAIAtggrivprfqeltpeklgkaglvreksfgttQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLirnnsivyggGAAEIACSIAVDaaadrypgvEQYAIRAFADALDAIPMAlaensglqpietLSAVKNQQirennpncgidcndvgtndmrEQNVFETLIGKQQQILLATQVVKMILKIddvispsey
malafdefgrpfiLLRQQEEKSRlrgldaqkanvsagkaVARILRTslgpkgmdkmlqspDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVlavadlerkdvnldlikvegkvggrledtELIYGITvdkdmshpQMPKRIENAKIAILTCpfeppkpktkhkvdiDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATggrivprfqeltpeklgkaglvreksfgtTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIddvispsey
MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY
*******FGRPFILL*************************************************TITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDK**********IENAKIAILTCPF**********VDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAV****I***NPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI*****
********GR*********************ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS**
MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY
*ALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query535 2.2.26 [Sep-21-2011]
O04450535 T-complex protein 1 subun yes no 1.0 1.0 0.904 0.0
P54411535 T-complex protein 1 subun N/A no 1.0 1.0 0.889 0.0
P40412535 T-complex protein 1 subun N/A no 1.0 1.0 0.882 0.0
Q4R6V2541 T-complex protein 1 subun N/A no 0.994 0.983 0.689 0.0
P48643541 T-complex protein 1 subun yes no 0.994 0.983 0.689 0.0
Q5RF02541 T-complex protein 1 subun yes no 0.994 0.983 0.686 0.0
Q68FQ0541 T-complex protein 1 subun yes no 0.994 0.983 0.684 0.0
P80316541 T-complex protein 1 subun yes no 0.994 0.983 0.682 0.0
Q54TD3538 T-complex protein 1 subun yes no 0.990 0.985 0.666 0.0
Q9UTM4546 T-complex protein 1 subun yes no 0.981 0.961 0.638 0.0
>sp|O04450|TCPE_ARATH T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1 Back     alignment and function desciption
 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/535 (90%), Positives = 523/535 (97%)

Query: 1   MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP 60
           MALAFDEFGRPFI+LR+Q++K+RLRG+DAQKAN++AGKAVARILR+SLGPKGMDKMLQ P
Sbjct: 1   MALAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGP 60

Query: 61  DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLL 120
           DGD+TITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAG+LLEQAE+ L
Sbjct: 61  DGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQL 120

Query: 121 ERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRR 180
           +RGIHPIRIAEGYEMASR+AVEHLERIAQKFEF +N+ EPLVQTCMTTL+SK+VNRCKR 
Sbjct: 121 DRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRS 180

Query: 181 LAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIE 240
           LAEIAVKAVLAVADLER+DVNLDLIKVEGKVGG+LEDTELIYGI +DKDMSHPQMPK+IE
Sbjct: 181 LAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILIDKDMSHPQMPKQIE 240

Query: 241 NAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQW 300
           +A IAILTCPFEPPKPKTKHKVDIDTVEKF+TLR+QEQ+YFD+MVQKCKDVGATLVICQW
Sbjct: 241 DAHIAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQKCKDVGATLVICQW 300

Query: 301 GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSF 360
           GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAG+VREKSF
Sbjct: 301 GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGVVREKSF 360

Query: 361 GTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGA 420
           GTT++RMLYIEHCANS+AVT+FIRGGNKMMIEETKRSIHDALCVARNLIRN SIVYGGGA
Sbjct: 361 GTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGA 420

Query: 421 AEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRE 480
           AEIACS+AVDAAAD+YPGVEQYAIRAFA+ALD++PMALAENSGLQPIETLSAVK+QQI+E
Sbjct: 421 AEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQPIETLSAVKSQQIKE 480

Query: 481 NNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 535
           N P  GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS SEY
Sbjct: 481 NIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNSEY 535
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Arabidopsis thaliana (taxid: 3702)
>sp|P54411|TCPE2_AVESA T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1 Back     alignment and function description
>sp|P40412|TCPE1_AVESA T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1 Back     alignment and function description
>sp|Q4R6V2|TCPE_MACFA T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1 Back     alignment and function description
>sp|P48643|TCPE_HUMAN T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1 Back     alignment and function description
>sp|Q5RF02|TCPE_PONAB T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1 Back     alignment and function description
>sp|Q68FQ0|TCPE_RAT T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1 Back     alignment and function description
>sp|P80316|TCPE_MOUSE T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1 Back     alignment and function description
>sp|Q54TD3|TCPE_DICDI T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1 Back     alignment and function description
>sp|Q9UTM4|TCPE_SCHPO T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
255547962535 chaperonin containing t-complex protein 1.0 1.0 0.928 0.0
225424564535 PREDICTED: T-complex protein 1 subunit e 1.0 1.0 0.928 0.0
356540213535 PREDICTED: T-complex protein 1 subunit e 1.0 1.0 0.923 0.0
356567490535 PREDICTED: T-complex protein 1 subunit e 1.0 1.0 0.921 0.0
242047226535 hypothetical protein SORBIDRAFT_02g00145 1.0 1.0 0.906 0.0
357463183535 T-complex protein 1 subunit epsilon [Med 1.0 1.0 0.919 0.0
115468554535 Os06g0562600 [Oryza sativa Japonica Grou 1.0 1.0 0.908 0.0
225446827535 PREDICTED: T-complex protein 1 subunit e 1.0 1.0 0.915 0.0
242093346535 hypothetical protein SORBIDRAFT_10g02222 1.0 1.0 0.906 0.0
226529790535 putative TCP-1/cpn60 chaperonin family p 1.0 1.0 0.902 0.0
>gi|255547962|ref|XP_002515038.1| chaperonin containing t-complex protein 1, epsilon subunit, tcpe, putative [Ricinus communis] gi|223546089|gb|EEF47592.1| chaperonin containing t-complex protein 1, epsilon subunit, tcpe, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1047 bits (2708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/535 (92%), Positives = 527/535 (98%)

Query: 1   MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP 60
           MALAFDE+GRPFI+L++QE KSRLRGLDAQKAN+SAGKAVARILRTSLGPKGMDKMLQSP
Sbjct: 1   MALAFDEYGRPFIILKEQEAKSRLRGLDAQKANISAGKAVARILRTSLGPKGMDKMLQSP 60

Query: 61  DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLL 120
           DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLL
Sbjct: 61  DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLL 120

Query: 121 ERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRR 180
           ERGIHPIR+AEGYEMAS+IAVEHLE I++KF+FGLND+EPLVQTCMTTL+SK+VNRCKR 
Sbjct: 121 ERGIHPIRVAEGYEMASKIAVEHLEHISEKFDFGLNDIEPLVQTCMTTLSSKIVNRCKRS 180

Query: 181 LAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIE 240
           LAEI+VKAVLAVADLERKDVNLDLIKVEGKVGG+LEDTELIYGI VDKDMSHPQMPK IE
Sbjct: 181 LAEISVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELIYGIVVDKDMSHPQMPKHIE 240

Query: 241 NAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQW 300
           +AKIAILTCPFEPPKPKTKHKVDID+VEKFQTLR+QEQ+YFDDMVQKCKD GATLVICQW
Sbjct: 241 DAKIAILTCPFEPPKPKTKHKVDIDSVEKFQTLRKQEQQYFDDMVQKCKDAGATLVICQW 300

Query: 301 GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSF 360
           GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAG+VREKSF
Sbjct: 301 GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGMVREKSF 360

Query: 361 GTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGA 420
           GTT+DRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHD+LCVARNLIRNNSIVYGGG+
Sbjct: 361 GTTKDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDSLCVARNLIRNNSIVYGGGS 420

Query: 421 AEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRE 480
           AEI+CSIAV+AAAD+YPGVEQYAIRAFAD+LDAIPMALAENSGLQPIETLSAVK+QQI+E
Sbjct: 421 AEISCSIAVEAAADKYPGVEQYAIRAFADSLDAIPMALAENSGLQPIETLSAVKSQQIKE 480

Query: 481 NNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 535
           NNP+CGIDCND GTNDMREQ VFETLIGKQQQILLATQVVKMILKIDDVISPSEY
Sbjct: 481 NNPHCGIDCNDAGTNDMREQYVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 535

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424564|ref|XP_002285352.1| PREDICTED: T-complex protein 1 subunit epsilon [Vitis vinifera] Back     alignment and taxonomy information
>gi|356540213|ref|XP_003538584.1| PREDICTED: T-complex protein 1 subunit epsilon-like [Glycine max] Back     alignment and taxonomy information
>gi|356567490|ref|XP_003551952.1| PREDICTED: T-complex protein 1 subunit epsilon-like [Glycine max] Back     alignment and taxonomy information
>gi|242047226|ref|XP_002461359.1| hypothetical protein SORBIDRAFT_02g001450 [Sorghum bicolor] gi|241924736|gb|EER97880.1| hypothetical protein SORBIDRAFT_02g001450 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357463183|ref|XP_003601873.1| T-complex protein 1 subunit epsilon [Medicago truncatula] gi|355490921|gb|AES72124.1| T-complex protein 1 subunit epsilon [Medicago truncatula] gi|388504082|gb|AFK40107.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|115468554|ref|NP_001057876.1| Os06g0562600 [Oryza sativa Japonica Group] gi|53791802|dbj|BAD53747.1| putative T complex protein [Oryza sativa Japonica Group] gi|113595916|dbj|BAF19790.1| Os06g0562600 [Oryza sativa Japonica Group] gi|125555746|gb|EAZ01352.1| hypothetical protein OsI_23386 [Oryza sativa Indica Group] gi|215695084|dbj|BAG90275.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|225446827|ref|XP_002283538.1| PREDICTED: T-complex protein 1 subunit epsilon [Vitis vinifera] gi|302143543|emb|CBI22104.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|242093346|ref|XP_002437163.1| hypothetical protein SORBIDRAFT_10g022220 [Sorghum bicolor] gi|241915386|gb|EER88530.1| hypothetical protein SORBIDRAFT_10g022220 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|226529790|ref|NP_001140911.1| putative TCP-1/cpn60 chaperonin family protein [Zea mays] gi|194701716|gb|ACF84942.1| unknown [Zea mays] gi|194708360|gb|ACF88264.1| unknown [Zea mays] gi|414883416|tpg|DAA59430.1| TPA: putative TCP-1/cpn60 chaperonin family protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
TAIR|locus:2024051535 AT1G24510 [Arabidopsis thalian 1.0 1.0 0.904 1.8e-261
UNIPROTKB|F1NKN0545 CCT5 "Uncharacterized protein" 0.994 0.976 0.701 3.3e-205
UNIPROTKB|Q5F411541 CCT5 "Uncharacterized protein" 0.994 0.983 0.701 3.3e-205
UNIPROTKB|P48643541 CCT5 "T-complex protein 1 subu 0.994 0.983 0.689 7.1e-203
UNIPROTKB|E2RB81540 CCT5 "Uncharacterized protein" 0.992 0.983 0.689 2.8e-201
UNIPROTKB|F1MWD3541 CCT5 "Uncharacterized protein" 0.994 0.983 0.686 3.5e-201
ZFIN|ZDB-GENE-030131-977541 cct5 "chaperonin containing TC 0.994 0.983 0.687 7.3e-201
RGD|735161541 Cct5 "chaperonin containing Tc 0.994 0.983 0.684 3.2e-200
MGI|MGI:107185541 Cct5 "chaperonin containing Tc 0.994 0.983 0.682 5.2e-200
UNIPROTKB|J9PAI4532 CCT5 "Uncharacterized protein" 0.983 0.988 0.686 2e-198
TAIR|locus:2024051 AT1G24510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2516 (890.7 bits), Expect = 1.8e-261, P = 1.8e-261
 Identities = 484/535 (90%), Positives = 523/535 (97%)

Query:     1 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP 60
             MALAFDEFGRPFI+LR+Q++K+RLRG+DAQKAN++AGKAVARILR+SLGPKGMDKMLQ P
Sbjct:     1 MALAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGP 60

Query:    61 DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLL 120
             DGD+TITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAG+LLEQAE+ L
Sbjct:    61 DGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQL 120

Query:   121 ERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRR 180
             +RGIHPIRIAEGYEMASR+AVEHLERIAQKFEF +N+ EPLVQTCMTTL+SK+VNRCKR 
Sbjct:   121 DRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRS 180

Query:   181 LAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIE 240
             LAEIAVKAVLAVADLER+DVNLDLIKVEGKVGG+LEDTELIYGI +DKDMSHPQMPK+IE
Sbjct:   181 LAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILIDKDMSHPQMPKQIE 240

Query:   241 NAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQW 300
             +A IAILTCPFEPPKPKTKHKVDIDTVEKF+TLR+QEQ+YFD+MVQKCKDVGATLVICQW
Sbjct:   241 DAHIAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQKCKDVGATLVICQW 300

Query:   301 GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSF 360
             GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAG+VREKSF
Sbjct:   301 GFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGVVREKSF 360

Query:   361 GTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGA 420
             GTT++RMLYIEHCANS+AVT+FIRGGNKMMIEETKRSIHDALCVARNLIRN SIVYGGGA
Sbjct:   361 GTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGA 420

Query:   421 AEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRE 480
             AEIACS+AVDAAAD+YPGVEQYAIRAFA+ALD++PMALAENSGLQPIETLSAVK+QQI+E
Sbjct:   421 AEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQPIETLSAVKSQQIKE 480

Query:   481 NNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 535
             N P  GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS SEY
Sbjct:   481 NIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNSEY 535
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
UNIPROTKB|F1NKN0 CCT5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F411 CCT5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P48643 CCT5 "T-complex protein 1 subunit epsilon" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RB81 CCT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWD3 CCT5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-977 cct5 "chaperonin containing TCP1, subunit 5 (epsilon)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|735161 Cct5 "chaperonin containing Tcp1, subunit 5 (epsilon)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107185 Cct5 "chaperonin containing Tcp1, subunit 5 (epsilon)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9PAI4 CCT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9V2T8THSB_SULSONo assigned EC number0.40.96630.9332yesno
O28045THSA_ARCFUNo assigned EC number0.41710.96440.9467yesno
Q9V2T4THSB_SULACNo assigned EC number0.40570.96630.9349yesno
P54411TCPE2_AVESANo assigned EC number0.88971.01.0N/Ano
P47209TCPE_CAEELNo assigned EC number0.64660.99060.9778yesno
Q54TD3TCPE_DICDINo assigned EC number0.66600.99060.9851yesno
Q68FQ0TCPE_RATNo assigned EC number0.68420.99430.9833yesno
P40413TCPE_YEASTNo assigned EC number0.55970.98690.9395yesno
P40412TCPE1_AVESANo assigned EC number0.88221.01.0N/Ano
P48643TCPE_HUMANNo assigned EC number0.68980.99430.9833yesno
P48424THSA_THEACNo assigned EC number0.40910.95700.9394yesno
O30561THS1_HALVDNo assigned EC number0.39730.96630.9232yesno
O24735THSB_SULTONo assigned EC number0.41520.96630.9365yesno
Q9V2Q7THS_PYRABNo assigned EC number0.44400.96070.9345yesno
P80316TCPE_MOUSENo assigned EC number0.68230.99430.9833yesno
Q9UTM4TCPE_SCHPONo assigned EC number0.63800.98130.9615yesno
Q4R6V2TCPE_MACFANo assigned EC number0.68980.99430.9833N/Ano
O26885THSB_METTHNo assigned EC number0.40990.95320.9479yesno
O57762THS_PYRHONo assigned EC number0.44780.96070.9362yesno
O04450TCPE_ARATHNo assigned EC number0.90461.01.0yesno
Q52500THSB_PYRKONo assigned EC number0.43450.96820.9487yesno
Q8SRP9TCPE_ENCCUNo assigned EC number0.48960.97750.9830yesno
Q5RF02TCPE_PONABNo assigned EC number0.68600.99430.9833yesno
Q9YA66THSB_AERPENo assigned EC number0.42200.96820.9452yesno
P50016THS_METKANo assigned EC number0.42830.96630.9486yesno
Q58405THS_METJANo assigned EC number0.44440.97380.9612yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030706001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (535 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00015538001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (527 aa)
  ••••••0.702
GSVIVG00019150001
RecName- Full=T-complex protein 1, alpha subunit; (540 aa)
  ••••••0.676
GSVIVG00038194001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (535 aa)
  ••••••0.668
GSVIVG00017754001
RecName- Full=T-complex protein 1, delta subunit; (533 aa)
  ••••••0.617
GSVIVG00025480001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (545 aa)
  ••••••0.612
GSVIVG00017910001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (481 aa)
  ••    0.604
GSVIVG00016108001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (562 aa)
  ••••••0.556
GSVIVG00003625001
SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (514 aa)
  ••••••0.545
GSVIVG00001176001
SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)
  ••    0.527
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •  • 0.518

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 0.0
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 0.0
cd03343517 cd03343, cpn60, cpn60 chaperonin family 0.0
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-175
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-171
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-157
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-150
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 1e-137
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 1e-120
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 1e-118
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-113
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-108
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 1e-107
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 1e-107
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 1e-102
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 3e-99
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 5e-95
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 1e-91
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 3e-91
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 4e-89
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 2e-85
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 2e-76
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 2e-17
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 1e-13
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 6e-11
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 2e-10
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 4e-10
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 8e-10
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 2e-09
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 5e-09
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-08
CHL00093529 CHL00093, groEL, chaperonin GroEL 3e-08
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 3e-07
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 4e-07
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information 
 Score = 1047 bits (2709), Expect = 0.0
 Identities = 395/526 (75%), Positives = 469/526 (89%)

Query: 6   DEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVT 65
           DE+GRPFI++R+QE+K RL+GL+A K+++ A K+VA ILRTSLGP+GMDK+L SPDG+VT
Sbjct: 1   DEYGRPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVT 60

Query: 66  ITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIH 125
           +TNDGATILE+MDVD+QIAKL+VELS+SQD EIGDGTTGVVV+AG+LLEQAEKLL+RGIH
Sbjct: 61  VTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIH 120

Query: 126 PIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIA 185
           PIRIA+GYE A +IAVEHLE IA K EF  ++ EPL+QT MT+L SK+V+RC R+ AEIA
Sbjct: 121 PIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIA 180

Query: 186 VKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIA 245
           V AVL+VADLERKDVN +LIKVEGKVGGRLEDT+L+ GI +DKD SHPQMPK +++AKIA
Sbjct: 181 VDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIA 240

Query: 246 ILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDE 305
           ILTCPFEPPKPKTKHK+DI +VE ++ L++ EQKYF +MV++ KD GA LVICQWGFDDE
Sbjct: 241 ILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDE 300

Query: 306 ANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQD 365
           ANHLL+   LPAVRWVGGVE+ELIAIATGGRIVPRF++L+PEKLGKAGLVRE SFGTT+D
Sbjct: 301 ANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKD 360

Query: 366 RMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIAC 425
           +ML IE C NS+AVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N IVYGGGAAEI+C
Sbjct: 361 KMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISC 420

Query: 426 SIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNC 485
           S+AV+ AAD+  G+EQYA+RAFADAL++IP+ALAENSGL PIETLS VK +Q++E NP+ 
Sbjct: 421 SLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHL 480

Query: 486 GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
           GIDC   GTNDM+EQ VFETLI K+QQILLATQVVKMILKIDDVI 
Sbjct: 481 GIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 526
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 535
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.91
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information 
Probab=100.00  E-value=5.5e-109  Score=886.14  Aligned_cols=523  Identities=75%  Similarity=1.179  Sum_probs=494.9

Q ss_pred             CCceEEeecchhhhhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHH
Q 009425            9 GRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMV   88 (535)
Q Consensus         9 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~   88 (535)
                      +.|..+++++...+..+|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~   83 (526)
T cd03339           4 GRPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLV   83 (526)
T ss_pred             CCCeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHH
Confidence            44544555542224788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHH
Q 009425           89 ELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTT  168 (535)
Q Consensus        89 ~~~~~~~~~~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~ts  168 (535)
                      +++++|++++||||||+++|+++||+++.+|+++|+||..|++||+.|++.+++.|++++++++.+..+.+.|.++|+|+
T Consensus        84 ~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~ts  163 (526)
T cd03339          84 ELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTS  163 (526)
T ss_pred             HHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999988765444678899999999


Q ss_pred             hccccchhhhhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEe
Q 009425          169 LNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILT  248 (535)
Q Consensus       169 l~sk~~~~~~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~  248 (535)
                      +++|+.+.+.+.|++++++|+..+.+.....+|.+.|+|.+++||+++||++++|++|++++.+++||+..+||||++++
T Consensus       164 l~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~  243 (526)
T cd03339         164 LGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILT  243 (526)
T ss_pred             hcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEE
Confidence            99999989999999999999998865433456778999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHH
Q 009425          249 CPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELEL  328 (535)
Q Consensus       249 ~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~  328 (535)
                      ++|++++++++.++.++++++++.+.++|+++++++++++++.|++||+++++|+|.|+++|.++||++++++++++|+|
T Consensus       244 ~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~Ler  323 (526)
T cd03339         244 CPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIEL  323 (526)
T ss_pred             ecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHH
Confidence            99999999988899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCeeccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 009425          329 IAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNL  408 (535)
Q Consensus       329 ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~  408 (535)
                      ||++|||+++++++++++..+|+|+.|++..+|.+++++++|++|++++.+||+|||+|+.+++|+||+++|||++++++
T Consensus       324 Ia~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~  403 (526)
T cd03339         324 IAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNL  403 (526)
T ss_pred             HHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999875578899999999999999999999999999999999999999999


Q ss_pred             hhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeee
Q 009425          409 IRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGID  488 (535)
Q Consensus       409 l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid  488 (535)
                      +++|++|||||++|++++..|++++...++.+++++++|++||+.||++|++|||+|+.+++.+|+..|...++.++|+|
T Consensus       404 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid  483 (526)
T cd03339         404 IRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGID  483 (526)
T ss_pred             hhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeee
Confidence            99999999999999999999999988888999999999999999999999999999999999999999975556789999


Q ss_pred             cCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhc
Q 009425          489 CNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS  531 (535)
Q Consensus       489 ~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~  531 (535)
                      +.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus       484 ~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~  526 (526)
T cd03339         484 CLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV  526 (526)
T ss_pred             cCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence            9999999999999999999999999999999999999999974

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 0.0
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 0.0
3izh_A513 Mm-Cpn D386a With Atp Length = 513 1e-108
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 1e-108
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 1e-107
3izi_A513 Mm-Cpn Rls With Atp Length = 513 1e-107
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 1e-107
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 1e-106
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 1e-105
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 1e-103
1a6d_A545 Thermosome From T. Acidophilum Length = 545 1e-103
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 1e-102
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 1e-102
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 1e-102
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 1e-101
1a6d_B543 Thermosome From T. Acidophilum Length = 543 4e-96
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-92
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 1e-88
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-85
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-80
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-71
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-68
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-66
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-66
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-66
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-64
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 6e-61
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-57
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-56
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-53
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 9e-52
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 1e-25
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 1e-20
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 4e-20
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-10
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 5e-09
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 2e-08
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 2e-08
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 2e-08
1oel_A547 Conformational Variability In The Refined Structure 2e-08
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 2e-08
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 2e-08
1ss8_A524 Groel Length = 524 2e-08
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 6e-08
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 6e-08
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 6e-08
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 7e-08
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 7e-08
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 7e-08
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 7e-08
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 2e-07
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-04
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure 
Iteration: 1

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/514 (68%), Positives = 438/514 (85%)
Query: 19  EEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMD 78
           + KSRL GL+A K+++ A KAVA  ++TSLGP G+DKM+   DGDVT+TNDGATIL  MD
Sbjct: 1   DRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMD 60
Query: 79  VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASR 138
           VD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R
Sbjct: 61  VDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAAR 120
Query: 139 IAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERK 198
           IA+EHL++I+      + + EPL+QT  TTL SK+VN C R++AEIAV AVL VAD++R+
Sbjct: 121 IAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRR 180
Query: 199 DVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKT 258
           DV+ +LIKVEGKVGGRLEDT+LI G+ VDKD SHPQMPK++E+AKIAILTCPFEPPKPKT
Sbjct: 181 DVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 240
Query: 259 KHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAV 318
           KHK+D+ +VE F+ L++ E++ F++M+++ K+ GA L +CQWGFDDEANHLL+  +LPAV
Sbjct: 241 KHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAV 300
Query: 319 RWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRA 378
           RWVGG E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRA
Sbjct: 301 RWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRA 360
Query: 379 VTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPG 438
           VTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P 
Sbjct: 361 VTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPT 420
Query: 439 VEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMR 498
           +EQYA+RAFADAL+ IPMALAENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM+
Sbjct: 421 LEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMK 480
Query: 499 EQNVFETLIGKQQQILLATQVVKMILKIDDVISP 532
            Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P
Sbjct: 481 HQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 514
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 0.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 0.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 0.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 0.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 0.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 0.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 0.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 0.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 0.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 0.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 0.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 0.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 0.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 0.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 0.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 0.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 0.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 3e-82
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 4e-72
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 3e-08
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 5e-08
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 5e-08
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 1e-07
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
 Score =  791 bits (2045), Expect = 0.0
 Identities = 302/545 (55%), Positives = 415/545 (76%), Gaps = 10/545 (1%)

Query: 1   MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSP 60
             +A DE GRPFI+++ Q  K R  GL+A+K+++ A ++VA I++TSLGP+G+DK+L SP
Sbjct: 18  AIVAQDEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISP 77

Query: 61  DGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLL 120
           DG++TITNDGATIL QM++DN+IAKL+V+LS+SQD EIGDGTTGVVV+A +LL+QA +L+
Sbjct: 78  DGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELI 137

Query: 121 ERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCK 178
           ++GIHPI+IA G++ A+++A+  LE          ++L  + L++   T+L SK+V++  
Sbjct: 138 QKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDH 197

Query: 179 RRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKR 238
            R AE+AV+AV+ V D +RKDV+ DLIK++G+VGG + D++LI G+ +DKD SHPQMPK 
Sbjct: 198 DRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKC 257

Query: 239 I------ENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVG 292
           +      +  K+AILTCPFEPPKPKTKHK+DI +VE++Q L+  EQ  F +M+   K  G
Sbjct: 258 VLPKEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAG 317

Query: 293 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKA 352
           A +VICQWGFDDEANHLL+  +LPAVRWVGG ELE IAI+T GRIVPRFQ+L+ +KLG  
Sbjct: 318 ADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTC 377

Query: 353 GLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNN 412
             + E+ FGTT+DRML IE    ++ VT F+RG NKM+++E +R++HD+LCV RNL++++
Sbjct: 378 SRIYEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDS 437

Query: 413 SIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSA 472
            +VYGGGAAE+  S+AV   AD+  G++QYA R FA ALD IPM LAENSGL PI TLS 
Sbjct: 438 RVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLST 497

Query: 473 VKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS- 531
           +K++Q++E   N G+DC   G+NDM+E  V +  IGK+QQILLATQ+ +MILKID+VI  
Sbjct: 498 LKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIIS 557

Query: 532 -PSEY 535
              EY
Sbjct: 558 GKDEY 562
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.37
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.34
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.28
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
Probab=100.00  E-value=3.9e-116  Score=941.77  Aligned_cols=531  Identities=56%  Similarity=0.964  Sum_probs=497.4

Q ss_pred             cccccCCceEEeecchhhhhhccHHHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHH
Q 009425            4 AFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQI   83 (535)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~   83 (535)
                      .++.+++|..++.++..+++.+|.+++.+|+.||..|+++|||||||+||+|||+++.|+++|||||+||||+|+++||+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~  100 (562)
T 3p9d_E           21 AQDEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEI  100 (562)
T ss_dssp             ---------CCCSSBCCCSCSHHHHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHH
T ss_pred             HHHhcCCCeEEeccCCcceecchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHH
Confidence            34455678777766644467789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcCCCchhHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCCh--hHH
Q 009425           84 AKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPL  161 (535)
Q Consensus        84 ~~ll~~~~~~~~~~~GDGttt~vlLa~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~--~~l  161 (535)
                      |+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||++|++.++++|++++++++.+.++.  +.|
T Consensus       101 Akll~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~~~e~L  180 (562)
T 3p9d_E          101 AKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFL  180 (562)
T ss_dssp             HHHHHHHHHHHHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSSSBCCCSSCHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCCcchhhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998887543233  789


Q ss_pred             HHHHHHHhccccchhhhhHHHHHHHHHHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCccc--
Q 009425          162 VQTCMTTLNSKMVNRCKRRLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRI--  239 (535)
Q Consensus       162 ~~ia~tsl~sk~~~~~~~~la~l~~~a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~--  239 (535)
                      .++|+||++||+++.+.++|++++++|+..+.+...+.+|+++|+|+++.|++++||++++|++|++++.||+||+++  
T Consensus       181 ~~vA~tSl~sK~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m~~~~~~  260 (562)
T 3p9d_E          181 LRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLP  260 (562)
T ss_dssp             HHHHHHHHSSSTTTTTHHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTSCCC----
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCCcCccccc
Confidence            999999999999999999999999999999876544578889999999999999999999999999999999999999  


Q ss_pred             ----ccceEEEEecCCCCCCCCCcceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCC
Q 009425          240 ----ENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNL  315 (535)
Q Consensus       240 ----~~~kI~ll~~~l~~~~~~~~~~v~i~s~~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I  315 (535)
                          +++||++++|||++++.+.++++.++++++++.+.++|+++++++++++.+.|+||||++++|++.+++||.++||
T Consensus       261 ~~~~~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I  340 (562)
T 3p9d_E          261 KEGSDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDL  340 (562)
T ss_dssp             -TTCSSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTC
T ss_pred             ccccccceEEEecccccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCC
Confidence                8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecChhHHHHHHHHhCCeeccCCCCCCCCCceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHH
Q 009425          316 PAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETK  395 (535)
Q Consensus       316 ~~i~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~  395 (535)
                      ++++++++.+|+|||++|||+++++++++++++||+|+.|+++++|++++++++|++|++++.|||+|||+|+.+++|+|
T Consensus       341 ~~v~~v~k~~le~ia~~TGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~te~~l~E~k  420 (562)
T 3p9d_E          341 PAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAE  420 (562)
T ss_dssp             CCEECCCTTTHHHHHHHHCCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSCCSCCEEEEECTTTTTHHHHT
T ss_pred             EEEeccCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCCCCeEEEEEeCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999985568999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCeEEeCCChHhHHHHHHHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 009425          396 RSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKN  475 (535)
Q Consensus       396 ~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~  475 (535)
                      |+++|||+++|+++++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++
T Consensus       421 r~i~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~  500 (562)
T 3p9d_E          421 RALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKS  500 (562)
T ss_dssp             HHHHHHHHHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEeeecCCCcccccccCCcccchhHHHHHHHHHHHHHHHHHhhhhhhcCCC
Q 009425          476 QQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE  534 (535)
Q Consensus       476 ~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~vk~~~l~~A~~~a~~lL~iD~iI~~~~  534 (535)
                      .|...++.++|||+.+|++.||++.|||||+.||+++|++|+|+|++|||||++|.+.+
T Consensus       501 ~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~  559 (562)
T 3p9d_E          501 KQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGK  559 (562)
T ss_dssp             HHHHTTTSSBCCBTTTTBCCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEECCC
T ss_pred             HHhhcCCCceeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99865667899999999999999999999999999999999999999999999998764
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 535
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 1e-48
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 2e-44
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 7e-44
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 2e-43
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 9e-37
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-23
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 1e-35
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 1e-24
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 8e-32
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 7e-16
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 8e-26
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 4e-25
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 7e-24
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 2e-23
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 6e-23
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 5e-15
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-07
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 6e-11
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 0.003
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  164 bits (415), Expect = 1e-48
 Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 3/170 (1%)

Query: 217 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQ 276
           D+ ++ G+ ++KD++HP+M + I+N +I +L    E  K +++  ++I   E F  + Q 
Sbjct: 1   DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 60

Query: 277 EQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGR 336
           E++Y   + +    +   +VI + G  D A H LM  N+ A+R V   +   IA A G R
Sbjct: 61  EEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGAR 120

Query: 337 IVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 385
           IV R +EL  + +G  AGL+  K  G   +   +I  C + +A TI +RG
Sbjct: 121 IVSRPEELREDDVGTGAGLLEIKKIGD--EYFTFITDCKDPKACTILLRG 168
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 100.0
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 100.0
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 100.0
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.97
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.93
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.55
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.54
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.48
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.35
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.33
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.3
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.29
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 96.98
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 95.55
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 95.48
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 95.05
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 88.73
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 83.74
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=2.4e-53  Score=406.11  Aligned_cols=242  Identities=44%  Similarity=0.680  Sum_probs=231.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccCCCCCeEEcCChHHHhcccccccHHHHHHHHHHHhhhhhcCCCchhHHH
Q 009425           28 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVV  107 (535)
Q Consensus        28 ~~~~~~~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vl  107 (535)
                      +++..|++|++.++++|++||||+|++|||+++.|++++||||+||++++.++||+++++++++++|++++||||||+++
T Consensus         2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~v   81 (243)
T d1a6db1           2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVI   81 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHhccccchhhhhHHHHHHHH
Q 009425          108 MAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVK  187 (535)
Q Consensus       108 La~~ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~~~~i~~~~~~~~~l~~ia~tsl~sk~~~~~~~~la~l~~~  187 (535)
                      |+++||+++.+++.+|+||..|++||+.+++.+++.|++++.++.+.                                 
T Consensus        82 l~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~---------------------------------  128 (243)
T d1a6db1          82 IAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAYA---------------------------------  128 (243)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECEEE---------------------------------
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccccccc---------------------------------
Confidence            99999999999999999999999999999999999888776554310                                 


Q ss_pred             HHHHhhhhhcCCCCccceeEEeccCCCcccceeEeEEEEeccCCCCCCCcccccceEEEEecCCCCCCCCCcceEEecCH
Q 009425          188 AVLAVADLERKDVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTV  267 (535)
Q Consensus       188 a~~~~~~~~~~~~~~~~I~i~~~~G~~~~ds~li~Giv~~~~~~~~~~~~~~~~~kI~ll~~~l~~~~~~~~~~v~i~s~  267 (535)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCHHHHHHHHhCCCcEEeecChhHHHHHHHHhCCeeccCCCCCCCC
Q 009425          268 EKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPE  347 (535)
Q Consensus       268 ~~l~~~~~~E~~~l~~~v~~i~~~~~~lvi~~~~i~~~al~~l~~~~I~~i~~v~~~~L~~ia~~tGa~ii~~~~~l~~~  347 (535)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeeeEEEEEecCccceEEEEEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhCCeEEeCCChHhHHHHH
Q 009425          348 KLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSI  427 (535)
Q Consensus       348 ~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~~TI~l~G~t~~~l~e~~~~l~dal~~~~~~l~~g~vvpGGG~~e~~la~  427 (535)
                                                                                          ||||++|+++|.
T Consensus       129 --------------------------------------------------------------------~ggGa~e~~~a~  140 (243)
T d1a6db1         129 --------------------------------------------------------------------AGGGATAAEIAF  140 (243)
T ss_dssp             --------------------------------------------------------------------ETTTHHHHHHHH
T ss_pred             --------------------------------------------------------------------cCCCchhHHHHH
Confidence                                                                                069999999999


Q ss_pred             HHHHHhccCCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCcEeeecCCCcccccccCCcccchh
Q 009425          428 AVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLI  507 (535)
Q Consensus       428 ~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~l~~l~~~~~~~~~~~~Gid~~~~~i~d~~~~gI~dp~~  507 (535)
                      .|+.+++++++++|+++++|++||+.||++|++|+|+|+.+++.+|+..|. +++.++|+|..+|++.||.+.|||||+.
T Consensus       141 ~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~-~~~~~~Gvd~~~g~i~d~~~~gV~dp~~  219 (243)
T d1a6db1         141 RLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHA-KGNKTYGINVFTGEIEDMVKNGVIEPIR  219 (243)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHH-TTCTTEEEETTTTEEEETTTTTCEEEHH
T ss_pred             HHhhhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHh-CCCCceeEECcCCEEeehHhcccEecHH
Confidence            999999999999999999999999999999999999999999999999998 6778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhc
Q 009425          508 GKQQQILLATQVVKMILKIDDVIS  531 (535)
Q Consensus       508 vk~~~l~~A~~~a~~lL~iD~iI~  531 (535)
                      +|+++|+.|+|+|++|||||++|.
T Consensus       220 vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         220 VGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999874
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure