Citrus Sinensis ID: 009427

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
Protein Sequence
MVFLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Secondary Structure (PSIPRED)
cEEEEEEEccccccccccccccccccHHHHHcccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccEEEEccHHHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHHHHcccccHHHHHHHHHcccccccccccccccEEEcccccccccHHHHHHHHHHHHHHcccEEEcccEEEEEEEcccEEEEEcccccEEEEEEEEEccccccHHHHHcccccccccccEEEEEEEcccccccccHHHHHHHHHHcccccccccccccEEEEEEEcccccccccccccccccEEEEccccccccccccccHHHHHHcHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccHHcccccccccccEEccccccccHHHHHHHHHccccccccccccHHcHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccEEEEEcHHHHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccEEcccEEEEcccHHHHHHHHHHHHHHccccEEccccEEEEEEccccEEEEEccccEEEEEEEEEccccccHHHHHHcccccccccEEEEEEEEcccccccccHHHHHHHHHHHcHHHccccHHHcEEEEEEEEEccccccccccccccEEEEEccccccccccEEccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mvflqlrhfngvshfpsqvhgkrkvsqrciclqpqaavpsrTRRIMESISvsgevggaggaySYDALKRLDQIWSNICSTQTVQQEIQQVVSsnaglfsqsdlsdkavgtfDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVEsgilveddideatatkfnpnrcgfegkgeIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAmgnfspvvkqafpagsgpldrttymftyidpqagspkLEELLERYWDlmpeyqgvtldnLEIQRVIYgifptyrdsplpaAFNRILQfgdasgiqspvsfggfgsltrhlgrlstgvyeavrgdfvdsyslsllnpympnlsASWLFQRAMSakqqsdvspdFINELLYVNFQCMqklgdpvlrpflqdvikfgplaktlglvmlnkpqiipsifkqvgipvlvdwSGHFFMLGYYTLLSTFADPVIRSLLnafpprmkYEWNRYLEAWKygsgldykl
Flexible Loop (DISEMBL)
MVFlqlrhfngvshfpsqvhgkrkvsqRCICLqpqaavpsrtrrIMESisvsgevggagGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVErntlkgreqewnisrkELLELVESGILVeddideatatkfnpnrcgfegKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAwkygsgldykl
Low Complexity Region (SEG)
MVFLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMesisvsgevggaggaysyDALKRLDQIWSNICstqtvqqeiqqvvssNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Disordered region (IsUnstruct)
**FLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVP**TRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMS******VSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGL****
Disordered Region (DISOPRED)
*VF****HFN****F*************CICLQPQAAVPSRTRRIMESIS**********AYSYDALKRLDQIWS*******************************AVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKG*****NISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYK*
Disordered Region (DISEMBL)
MVFLQLRHFNGVSHFP**********QRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQR********DVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Disordered Region (DISPRO)
MVFLQLRHFNGVSHFPS*****RKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSS*************AVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
225447101	583	PREDICTED: uncharacterized protein LOC10	0.994	0.912	0.734	0.0
255568683	583	conserved hypothetical protein [Ricinus	0.992	0.910	0.708	0.0
356554456	584	PREDICTED: uncharacterized protein LOC10	0.998	0.914	0.702	0.0
449453527	591	PREDICTED: uncharacterized protein LOC10	0.927	0.839	0.710	0.0
42569568	585	Lycopene beta/epsilon cyclase protein [A	0.998	0.912	0.646	0.0
164564753	522	CM0545.530.nc [Lotus japonicus]	0.872	0.894	0.702	0.0
326507200	611	predicted protein [Hordeum vulgare subsp	0.921	0.806	0.637	0.0
357141364	593	PREDICTED: uncharacterized protein LOC10	0.971	0.876	0.628	0.0
308044513	593	uncharacterized protein LOC100502482 [Ze	0.921	0.831	0.643	0.0
115476458	614	Os08g0422000 [Oryza sativa Japonica Grou	0.923	0.804	0.636	0.0

>gi|225447101|ref|XP_002273536.1| PREDICTED: uncharacterized protein LOC100241486 [Vitis vinifera] gi|297739195|emb|CBI28846.3| unnamed protein product [Vitis vinifera]

 Score =  856 bits (2212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/584 (73%), Positives = 480/584 (82%), Gaps = 52/584 (8%)

Query: 1   MVFLQLRHFN-GVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG 59
           MV LQL+  N G+S  PS    +R+ + R +CLQ QA +PSRT+RIMESISVSGEVGGAG
Sbjct: 1   MVVLQLQQPNYGISQGPSLQR-RRQRALRTVCLQTQA-LPSRTQRIMESISVSGEVGGAG 58

Query: 60  GAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGT 119
           GAYSY ALKRLDQ+WS+ICS QTV QE ++VVSS  GLF  S + DKAV TFDV+VCGGT
Sbjct: 59  GAYSYSALKRLDQLWSSICSAQTVYQEPRKVVSSVPGLFKHSAVDDKAVETFDVLVCGGT 118

Query: 120 LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF 179
           LGIFIATALS KGLRV +VERN LKGREQEWNISRKELLELVE+GILVEDDI + TA KF
Sbjct: 119 LGIFIATALSSKGLRVGVVERNILKGREQEWNISRKELLELVEAGILVEDDIKQVTAAKF 178

Query: 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV 239
           NPNRCGFEGKGEIWVEDILNLGVSP KLIE+VK+RF SLGGVIFEGYSVS+IC YE+AAV
Sbjct: 179 NPNRCGFEGKGEIWVEDILNLGVSPVKLIEVVKRRFTSLGGVIFEGYSVSNICIYEDAAV 238

Query: 240 LLLAEGKILSSHLIIDAMGNFSPVVKQ--------------------------------- 266
           L LAEG ILS+ L+IDAMGNFSPVVKQ                                 
Sbjct: 239 LQLAEGNILSTRLLIDAMGNFSPVVKQMRGGRKPDGVCLVVGSCARGFTNNSTSDVIYSS 298

Query: 267 ----------------AFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQG 310
                           AFPAGSGP+DRTTYMFTY+DPQ   PKLE+LLE YWD+MPEYQG
Sbjct: 299 SSVKKVGESEVQYFWEAFPAGSGPVDRTTYMFTYVDPQPKCPKLEDLLEDYWDMMPEYQG 358

Query: 311 VTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 370
           V+L++L+I RV++GIFPTYRDSPLPAAF+RILQFGDASGIQSPVSFGGFGSLTRHL RLS
Sbjct: 359 VSLEDLQILRVVFGIFPTYRDSPLPAAFDRILQFGDASGIQSPVSFGGFGSLTRHLERLS 418

Query: 371 TGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQC 430
           TG+YEA+ G+F+DSY+LSLLNPYMPNLSA+WLFQRAMSAKQQ DVSPDFI+ELLYVNFQ 
Sbjct: 419 TGIYEAITGNFLDSYNLSLLNPYMPNLSAAWLFQRAMSAKQQYDVSPDFISELLYVNFQS 478

Query: 431 MQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLG 490
           MQ+LGDPVLRPFLQDVI+FGPL KTLGLVML+KPQI+PSIFKQVG+PVL+DWSGHF MLG
Sbjct: 479 MQRLGDPVLRPFLQDVIQFGPLVKTLGLVMLSKPQILPSIFKQVGVPVLLDWSGHFVMLG 538

Query: 491 YYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYK 534
           YYT LSTF DP IR L+NAFP +MKY+W RYLEAWKYG+GLDYK
Sbjct: 539 YYTFLSTFIDPAIRPLINAFPAKMKYKWKRYLEAWKYGAGLDYK 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568683|ref|XP_002525313.1| conserved hypothetical protein [Ricinus communis] gi|223535372|gb|EEF37046.1| conserved hypothetical protein [Ricinus communis]

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/587 (70%), Positives = 467/587 (79%), Gaps = 56/587 (9%)

Query: 1   MVFLQLRHFNGVSHFPSQ---VHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGG 57
           M  +QL   NG+  +P     +  +++ +QR + LQ QA VPSRT+RIMESISVS EVGG
Sbjct: 1   MEVVQLGQCNGLFSYPKLSPLLQRRKERTQRSMSLQAQA-VPSRTQRIMESISVSNEVGG 59

Query: 58  AGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCG 117
           AGGAYSYDALKRLDQIWS+ICS Q   QE QQVVSS   + S+ DL+D+    FDV+VCG
Sbjct: 60  AGGAYSYDALKRLDQIWSSICS-QAATQEPQQVVSSIPYVPSRLDLTDE--DRFDVVVCG 116

Query: 118 GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT 177
           GTLGIFIA AL  KGLRV IVERN LKGREQEWNISRKELLELVE GIL E+DI++A A 
Sbjct: 117 GTLGIFIAAALIAKGLRVGIVERNILKGREQEWNISRKELLELVEVGILSENDIEKAIAA 176

Query: 178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA 237
           KFNPNRCGFE KGE+WVEDILNLGVSPAKLIEI KK FISLGGVI EGYSVSSIC YE+A
Sbjct: 177 KFNPNRCGFEDKGEVWVEDILNLGVSPAKLIEITKKHFISLGGVILEGYSVSSICVYEDA 236

Query: 238 AVLLLAEGKILSSHLIIDAMGNFSPVVKQ------------------------------- 266
           AVL LAEGK LS+ LIIDAMGNFSPVV+Q                               
Sbjct: 237 AVLQLAEGKTLSTRLIIDAMGNFSPVVRQIRGGRKPDGVCLVVGSCARGFEDNSTSDVIY 296

Query: 267 ------------------AFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEY 308
                             AFPAGSGP+DRTTYMFTY+ PQ GSPKLE+LLE YWDLMP+Y
Sbjct: 297 SSSSMKNIGESEVQLFWEAFPAGSGPMDRTTYMFTYVSPQPGSPKLEDLLENYWDLMPKY 356

Query: 309 QGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 368
           QGV+L+NLEI RVIYGIFPTY DSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR
Sbjct: 357 QGVSLENLEIMRVIYGIFPTYCDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGR 416

Query: 369 LSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNF 428
           LS G+YEA+ GDF+D++SLSLLNPYMPNLSASWLFQRAMSAKQ+S++ P+F+N+LL+VNF
Sbjct: 417 LSAGIYEAISGDFLDAHSLSLLNPYMPNLSASWLFQRAMSAKQKSNIYPEFVNDLLHVNF 476

Query: 429 QCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFM 488
           Q MQ+LGDPVLRPFLQDVI+  PLAKTLG+VML KPQIIP+IFKQVGIPVL+DWSGHF M
Sbjct: 477 QSMQRLGDPVLRPFLQDVIQLEPLAKTLGIVMLTKPQIIPAIFKQVGIPVLLDWSGHFLM 536

Query: 489 LGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 535
           L YYT LS+FADPVIR L+N  P ++KYEW R+LEAWKYGSGLDYKL
Sbjct: 537 LSYYTFLSSFADPVIRPLINVLPLKLKYEWKRHLEAWKYGSGLDYKL 583

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554456|ref|XP_003545562.1| PREDICTED: uncharacterized protein LOC100784275 [Glycine max]

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/585 (70%), Positives = 463/585 (79%), Gaps = 51/585 (8%)

Query: 1   MVFLQLRHFNGVSHFP-SQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG 59
           M+ L+L+  NG+S          +K S+R +  +PQA VPSRT+RIMES+SVSGEVGGAG
Sbjct: 1   MLLLRLQPINGISQLSVGTSFPHKKCSRRPLLSRPQA-VPSRTQRIMESVSVSGEVGGAG 59

Query: 60  GAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGT 119
           GAYSY+ALKRLDQ WS+ICS+Q V QE QQVVS+   LF  SDL+DKA G++DV+VCGGT
Sbjct: 60  GAYSYEALKRLDQQWSSICSSQEVVQEPQQVVSTIPSLFGSSDLADKAEGSYDVLVCGGT 119

Query: 120 LGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF 179
           LGIFIATAL  +GLRVAIVERN LKGR+QEWNIS KELLELVE G+L EDDI+ ATA KF
Sbjct: 120 LGIFIATALCARGLRVAIVERNVLKGRDQEWNISTKELLELVEVGVLEEDDIERATAVKF 179

Query: 180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV 239
           NPNRCGFE KG+IWV DILNLGVSPAKLIEIVK RFISLGGVIFEG  VS I  YE+AAV
Sbjct: 180 NPNRCGFERKGDIWVNDILNLGVSPAKLIEIVKTRFISLGGVIFEGCGVSCINVYEDAAV 239

Query: 240 LLLAEGKILSSHLIIDAMGNFSPVVKQ--------------------------------- 266
           L L+  KILSS LIIDAMGNFSPVVKQ                                 
Sbjct: 240 LKLSGDKILSSRLIIDAMGNFSPVVKQIRGGRKPDGVCLVVGTCARGFETNSTSDVIFSS 299

Query: 267 ----------------AFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQG 310
                           AFPAGSGPLDRTTY+FTY++PQ  SPKLEELLE YWDLMPEYQG
Sbjct: 300 SSIKKVGDSKAQLFWEAFPAGSGPLDRTTYLFTYVEPQPASPKLEELLEAYWDLMPEYQG 359

Query: 311 VTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS 370
           V+LDNLEI RVIYGIFPTYR SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGRLS
Sbjct: 360 VSLDNLEILRVIYGIFPTYRQSPLPAAFSRVLQFGDASGIQSPVSFGGFGSLTRHLGRLS 419

Query: 371 TGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQC 430
            G++EA+ GD++DSYSLSLLNPYMPNLSASWLFQRAMSAK+QS+V  DFINELLY NF C
Sbjct: 420 AGIHEAINGDYLDSYSLSLLNPYMPNLSASWLFQRAMSAKKQSNVPADFINELLYTNFSC 479

Query: 431 MQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLG 490
           MQ+LGDPVLRPFLQDV++FGPL+KTLGLVML  P+I+PSIFKQVGIPVL+DWS HF  LG
Sbjct: 480 MQRLGDPVLRPFLQDVVQFGPLSKTLGLVMLTNPKILPSIFKQVGIPVLLDWSRHFLGLG 539

Query: 491 YYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 535
           YYT LSTFADP++R  LN  P +  ++W R+LEAWKYG+GLDYKL
Sbjct: 540 YYTFLSTFADPIVRPFLNTLPSKTSFQWKRHLEAWKYGAGLDYKL 584

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453527|ref|XP_004144508.1| PREDICTED: uncharacterized protein LOC101203820 [Cucumis sativus] gi|449493152|ref|XP_004159207.1| PREDICTED: uncharacterized LOC101203820 [Cucumis sativus]

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/545 (71%), Positives = 445/545 (81%), Gaps = 49/545 (8%)

Query: 40  SRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFS 99
           SRT+RIME ISV+GEVGGAGGAYSY+ALKRLDQIWS ICS Q + +  Q+VV   +G FS
Sbjct: 47  SRTQRIMEGISVTGEVGGAGGAYSYNALKRLDQIWSRICSDQEIPEAAQEVVRRVSGAFS 106

Query: 100 QSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLE 159
           +SDL +KA+ TFDV+VCGGTLG+FIATALS KGLR+ IVERN LKGREQEWNISRKELLE
Sbjct: 107 RSDLEEKAIDTFDVLVCGGTLGVFIATALSLKGLRIGIVERNVLKGREQEWNISRKELLE 166

Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
           LVE G++ ED+I++ATA KFNPNRC FEGKGEIWVE+ILNLGVSP KLIE+VKKRFISLG
Sbjct: 167 LVEVGVITEDEIEQATAMKFNPNRCAFEGKGEIWVENILNLGVSPEKLIELVKKRFISLG 226

Query: 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ------------- 266
           GVIFEG +VSSIC Y++  V+ L++G ILSS L IDAMGNFSPVVKQ             
Sbjct: 227 GVIFEGCNVSSICIYDDTTVMQLSDGNILSSQLTIDAMGNFSPVVKQIRRGRKPDGVCLV 286

Query: 267 ------------------------------------AFPAGSGPLDRTTYMFTYIDPQAG 290
                                               AFPAGSGP+DRTTYMFTYIDPQ G
Sbjct: 287 VGSCARGFRDNSTSDVIYSSSSLRKVGSSEVQLFWEAFPAGSGPVDRTTYMFTYIDPQPG 346

Query: 291 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 350
           SPKLEELLE YWDLMP+YQGV+LD+L+I R+IYG+FPTYR+SPLPAAF+R+LQFGDASGI
Sbjct: 347 SPKLEELLEEYWDLMPKYQGVSLDDLKILRIIYGVFPTYRNSPLPAAFDRVLQFGDASGI 406

Query: 351 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 410
           QSPVSFGGFGSLTRHLGRLSTG+YEAV  +F+DS SLSLLNPYMPNLS+SWLFQRAMSAK
Sbjct: 407 QSPVSFGGFGSLTRHLGRLSTGIYEAVTENFLDSNSLSLLNPYMPNLSSSWLFQRAMSAK 466

Query: 411 QQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSI 470
           Q+S++SP FINELL+VNFQ MQ+LGDPVLRPFLQDV++F PL +TLGLVML KPQ++PSI
Sbjct: 467 QRSNISPYFINELLHVNFQSMQRLGDPVLRPFLQDVVQFVPLTQTLGLVMLTKPQLLPSI 526

Query: 471 FKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSG 530
           FKQVGIPVL+DW GHF MLGYYT LSTF DP++RS L++  P+  +EW R LEAWKYG+G
Sbjct: 527 FKQVGIPVLLDWFGHFGMLGYYTFLSTFVDPIVRSFLSSLTPKETFEWKRRLEAWKYGAG 586

Query: 531 LDYKL 535
           LDYKL
Sbjct: 587 LDYKL 591

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569568|ref|NP_180823.3| Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana] gi|110742020|dbj|BAE98947.1| hypothetical protein [Arabidopsis thaliana] gi|330253614|gb|AEC08708.1| Lycopene beta/epsilon cyclase protein [Arabidopsis thaliana]

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/586 (64%), Positives = 442/586 (75%), Gaps = 52/586 (8%)

Query: 1   MVFLQLRHFNGV--SHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGA 58
           MV LQ+  FNG   S   +Q +  R+ +   +C+Q Q A PS T++IMESISV GE GGA
Sbjct: 1   MVVLQIHQFNGFVSSVSRAQTNQGRRRASTTVCVQTQLA-PSLTQKIMESISVGGEAGGA 59

Query: 59  GGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGG 118
           GGAYSY+ALKRLD IWSNIC+  T  QE QQ+VS  +G      + +  VGTFD++VCGG
Sbjct: 60  GGAYSYNALKRLDNIWSNICTQPTGPQETQQIVSRVSGFSQDYSMGNNLVGTFDIVVCGG 119

Query: 119 TLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATK 178
           TLGIF+ATAL  KGLRVA+VERN +KGR+QEWNISRKE+ EL E  +L ED+I+E  A K
Sbjct: 120 TLGIFLATALCAKGLRVAVVERNAIKGRDQEWNISRKEMKELTEVRVLTEDEIEEVIAAK 179

Query: 179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA 238
           FNPNRCGFE  G+IWVEDILNLGVSPAKL+E VK+RFISLGGVI E  S+SSI  Y + A
Sbjct: 180 FNPNRCGFENLGDIWVEDILNLGVSPAKLVETVKQRFISLGGVILEDSSLSSIVIYNDLA 239

Query: 239 VLLLAEGKILSSHLIIDAMGNFSPVVKQ-------------------------------- 266
           V+ L++G  LSS L+IDAMGNFSP++KQ                                
Sbjct: 240 VMQLSKGDTLSSRLVIDAMGNFSPILKQIKRGRKPDGMCLVVGSCAHGFKENSSSDVIYS 299

Query: 267 -----------------AFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQ 309
                            AFPAGSGPLDRTTYMFTY +PQ+ SP LE+LLE YW LMP+YQ
Sbjct: 300 SSSVTRVADSNVQLFWEAFPAGSGPLDRTTYMFTYTEPQSTSPSLEDLLEEYWKLMPKYQ 359

Query: 310 GVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL 369
           GV+LD LEI RV+YGIFPTYR+SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGRL
Sbjct: 360 GVSLDELEILRVVYGIFPTYRNSPLPAAFDRVLQFGDASGIQSPVSFGGFGSLTRHLGRL 419

Query: 370 STGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQ 429
           S G+Y+A+ GD +DS SLS LNPYMPNLSASWLFQRAMSAKQQ DVS  F NELL+VNF 
Sbjct: 420 SNGIYDAIDGDLLDSDSLSKLNPYMPNLSASWLFQRAMSAKQQLDVSRGFTNELLHVNFS 479

Query: 430 CMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFML 489
           CMQ+LGDPVLRPFLQD+I+FGPLAKTLGLVML KPQIIPSIF+QVGIPVL+DWS HFFML
Sbjct: 480 CMQRLGDPVLRPFLQDIIQFGPLAKTLGLVMLTKPQIIPSIFRQVGIPVLLDWSVHFFML 539

Query: 490 GYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 535
           G YTLLS + DP++R  L   P + ++EW R LEAWKYG+GLDY+L
Sbjct: 540 GLYTLLSAYIDPLLRPSLEGLPSKTRFEWKRCLEAWKYGAGLDYEL 585

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164564753|dbj|BAF98233.1| CM0545.530.nc [Lotus japonicus]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/528 (70%), Positives = 421/528 (79%), Gaps = 61/528 (11%)

Query: 1   MVFLQLRHFNGVSH------FPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGE 54
           M+ LQL+ FNGVSH      FP     ++K S+R + L+PQA VPSRT+RIMES+SVSGE
Sbjct: 1   MLLLQLQPFNGVSHLTVGTPFP-----QKKCSRRTLLLRPQA-VPSRTQRIMESVSVSGE 54

Query: 55  VGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVI 114
           VGGAGGAYSY+ALKRLDQ+WS++CS Q V QE QQVVSS   LF  SDL++KA G++DV+
Sbjct: 55  VGGAGGAYSYEALKRLDQLWSSLCSAQEVVQEPQQVVSSIPSLFRSSDLANKAEGSYDVV 114

Query: 115 VCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEA 174
           VCGGTLGIFIATAL  +GL+VAIVERN LKGREQ+WNISRKELLELVE G+L EDDI+ A
Sbjct: 115 VCGGTLGIFIATALCARGLKVAIVERNVLKGREQDWNISRKELLELVEVGVLEEDDIERA 174

Query: 175 TATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY 234
           T+  FNPNRCGFE KG+IWV +IL+LGVSP KLIEIVK+RFISLGGVIFEG SVS I  Y
Sbjct: 175 TSINFNPNRCGFESKGDIWVNNILHLGVSPVKLIEIVKERFISLGGVIFEGCSVSCINIY 234

Query: 235 ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ---------------------------- 266
           E+AAVL L+  KILSS LIIDAMGNFSP+VKQ                            
Sbjct: 235 EDAAVLKLSGDKILSSRLIIDAMGNFSPIVKQIRRGRKPDGVCLVVGTCARGFESNSTSD 294

Query: 267 ---------------------AFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLM 305
                                AFPA SGPLDRTTYMFTY++ Q GSPKLEELLE YWDLM
Sbjct: 295 VIFSSSSVKKVGDSQAQYFWEAFPAASGPLDRTTYMFTYVEAQPGSPKLEELLEAYWDLM 354

Query: 306 PEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRH 365
           PEYQGV+LDNLEI RVIYGIFPTYR+SPLPAAF R+LQFGDASGIQSPVSFGGFGSLTRH
Sbjct: 355 PEYQGVSLDNLEILRVIYGIFPTYRESPLPAAFCRVLQFGDASGIQSPVSFGGFGSLTRH 414

Query: 366 LGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLY 425
           LGR+S G+YEA+ GD++DSY+LSLLNPYMPNLSASWLFQRAMSAK+QS+V PDFINELL+
Sbjct: 415 LGRISAGIYEAINGDYLDSYNLSLLNPYMPNLSASWLFQRAMSAKKQSNVPPDFINELLF 474

Query: 426 VNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQ 473
            NF CMQ+LGDPVLRPFLQDV++FGPL+KTLGLVML KPQI+PSIFKQ
Sbjct: 475 ANFSCMQRLGDPVLRPFLQDVVQFGPLSKTLGLVMLTKPQILPSIFKQ 522

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326507200|dbj|BAJ95677.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/551 (63%), Positives = 414/551 (75%), Gaps = 58/551 (10%)

Query: 39  PSRTRRIMESISVSG-EVGGAGGAYSYDALKRLDQIWSNICST---QTVQQEIQQVVSSN 94
           PSRT+ IM+ IS +G EVGGAGGAYSYDALKRLDQI S+ICS     +  +   Q+V+  
Sbjct: 59  PSRTQTIMDKISSAGDEVGGAGGAYSYDALKRLDQICSSICSAPQEASSSKAPPQIVTRV 118

Query: 95  AGLFSQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISR 154
            G    +  +D    TFDV+VCGGTLGIFIATALS++GLRV IVERN +KGREQEWNISR
Sbjct: 119 QGPARAA--ADLGAETFDVLVCGGTLGIFIATALSYRGLRVGIVERNAVKGREQEWNISR 176

Query: 155 KELLELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKR 214
           KEL+E+V+ GIL E + ++   + FNPNRCGFEGKGEIWVEDIL+LG+SPAKL+EI+K R
Sbjct: 177 KELMEIVQVGILSEAEAEQVVTSDFNPNRCGFEGKGEIWVEDILHLGISPAKLVEIMKAR 236

Query: 215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ-------- 266
           FIS GG IFEG SVSSI  +++ AVL L++G  L   L++DAMGNFSP+V+Q        
Sbjct: 237 FISSGGEIFEGKSVSSISVHDDLAVLKLSDGDRLRCRLVVDAMGNFSPIVRQIRSGRRPD 296

Query: 267 --------------------------------------------AFPAGSGPLDRTTYMF 282
                                                       AFPAGSGP DRTTYMF
Sbjct: 297 GLCLVVGACARGFEKNTTSDVIFSSSSVKSVGGDSGRGVQLFWEAFPAGSGPTDRTTYMF 356

Query: 283 TYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRIL 342
           TY+DPQ GSPKLEELLE +WDLMP YQ   L+NL+I+RVIYGIFPTYRDSPLPAAF+RIL
Sbjct: 357 TYVDPQFGSPKLEELLEMFWDLMPGYQDTVLENLDIRRVIYGIFPTYRDSPLPAAFDRIL 416

Query: 343 QFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWL 402
           Q GDASGIQSPVSFGGFGSLTRHLGRLS GVYEAV GDF+D+ SL LLNPYMPNLSASWL
Sbjct: 417 QVGDASGIQSPVSFGGFGSLTRHLGRLSNGVYEAVSGDFLDAQSLKLLNPYMPNLSASWL 476

Query: 403 FQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLN 462
           FQRAMS +  SD+SP FINELL+ NFQ MQKLGD VLRPFLQDVI+FGPL KTLGLVM++
Sbjct: 477 FQRAMSTRPGSDISPTFINELLFANFQSMQKLGDSVLRPFLQDVIQFGPLVKTLGLVMIS 536

Query: 463 KPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYL 522
           +PQI+P IFKQVG+ V+++WSGHF MLGYYT LS+F  P +   + +  PR +Y+W+RYL
Sbjct: 537 RPQILPEIFKQVGVGVILNWSGHFVMLGYYTFLSSFVGPAVTPWVKSLAPRDRYQWDRYL 596

Query: 523 EAWKYGSGLDY 533
           EAW+YG+GLDY
Sbjct: 597 EAWEYGAGLDY 607

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357141364|ref|XP_003572198.1| PREDICTED: uncharacterized protein LOC100825935 [Brachypodium distachyon]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/581 (62%), Positives = 431/581 (74%), Gaps = 61/581 (10%)

Query: 13  SHFPSQVHGKRKVSQRCICL----------QPQAAVPSRTRRIMESISVSGEVGGAGGAY 62
           +  P   HG R V+ R  C           +  A  PSRT+ IM+ IS   EVGGAGGAY
Sbjct: 12  AQLPWARHGGRLVAPRAGCGRRIVRVRASGEAGARPPSRTQMIMDKISGGDEVGGAGGAY 71

Query: 63  SYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGI 122
           SY ALKRLDQI S+IC +Q V  ++ ++V+   G     DL   +   FDV+VCGGTLGI
Sbjct: 72  SYGALKRLDQICSSICQSQ-VDPKVPEIVTQVQGPSVDYDLGGGS-EIFDVLVCGGTLGI 129

Query: 123 FIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN 182
           F+ATALSFKGLRV I+ERN +KGREQEWNISRKEL+E+VE GIL E ++++  ++ FNPN
Sbjct: 130 FVATALSFKGLRVGIIERNIIKGREQEWNISRKELMEIVEVGILSEGEVEQIISSDFNPN 189

Query: 183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL 242
           RCGFE KGEIWVE ILNLG+SPAKL+EI+K+RFIS GG IFEG S+SSI  +++ AVL L
Sbjct: 190 RCGFENKGEIWVEGILNLGISPAKLVEIMKERFISSGGAIFEGKSLSSISVHDDLAVLKL 249

Query: 243 AEGKILSSHLIIDAMGNFSPVVKQ------------------------------------ 266
           ++G  L   L++DAMGNFSP+V+Q                                    
Sbjct: 250 SDGDCLPCRLVVDAMGNFSPIVRQIRSGRKPDGLCLVVGACARGFERNTTSDVIFSSSSV 309

Query: 267 -------------AFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTL 313
                        AFPAGSGP DRTTYMFTY+DPQ G PKLEELLE YWDLMPEYQ VTL
Sbjct: 310 KKAGNSGVQLFWEAFPAGSGPADRTTYMFTYVDPQFGFPKLEELLEIYWDLMPEYQDVTL 369

Query: 314 DNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV 373
           + L+I+RVI+GIFPT+RDSPLPAAF+RILQ GDASGIQSPVSFGGFGSLTRHLGRLS G+
Sbjct: 370 ETLDIRRVIFGIFPTHRDSPLPAAFDRILQVGDASGIQSPVSFGGFGSLTRHLGRLSNGI 429

Query: 374 YEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQK 433
           YEAV GDF+D+YSL LLNPYMPNLSASWLFQRAMS + Q++VSP FINELLY NFQ MQK
Sbjct: 430 YEAVSGDFLDAYSLRLLNPYMPNLSASWLFQRAMSTRPQTNVSPTFINELLYANFQSMQK 489

Query: 434 LGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYT 493
           LGD VLRPFLQDVI+FGPL KTLGLVML++PQI+PSIFKQVG+ V+++WSGHF MLGYYT
Sbjct: 490 LGDSVLRPFLQDVIQFGPLVKTLGLVMLSRPQILPSIFKQVGLGVILNWSGHFVMLGYYT 549

Query: 494 LLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSGLDYK 534
            LS F DPV+R  + + PPR KY+W RYLEAWKYG+GLDY+
Sbjct: 550 FLSNFIDPVVRPWVESLPPRNKYQWKRYLEAWKYGAGLDYR 590

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308044513|ref|NP_001183889.1| uncharacterized protein LOC100502482 [Zea mays] gi|238015286|gb|ACR38678.1| unknown [Zea mays] gi|413922261|gb|AFW62193.1| hypothetical protein ZEAMMB73_528743 [Zea mays]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/544 (64%), Positives = 415/544 (76%), Gaps = 51/544 (9%)

Query: 40  SRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFS 99
           SRT+ IM+ IS    VGGAGGAYSY ALKRLDQIWS+IC  Q    ++ +VV+   GL +
Sbjct: 49  SRTQMIMDKISAGEGVGGAGGAYSYSALKRLDQIWSSICEAQA-DSKVPEVVTRVEGLLA 107

Query: 100 QSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLE 159
            SDL   +   FDVIVCGGTLGIF+ATALS KGLR+ I+ERN +KGREQEWNISRKEL+E
Sbjct: 108 DSDLGSGS-EIFDVIVCGGTLGIFVATALSSKGLRIGIIERNIIKGREQEWNISRKELME 166

Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
           +VE GIL E ++++  ++ FNPNRCGFE KGEIWVE+ILNLGVSPAKL+E +K+RFIS G
Sbjct: 167 IVEIGILSEAELEQIISSDFNPNRCGFEDKGEIWVENILNLGVSPAKLVENMKERFISSG 226

Query: 220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ------------- 266
           G IFE  S+SSI  Y++ AVL L++G  LS  L++DAMGNFSP+V+Q             
Sbjct: 227 GAIFEEKSLSSIYVYDDLAVLKLSDGDSLSCRLVVDAMGNFSPIVRQIRSGRKPDGMCLV 286

Query: 267 ------------------------------------AFPAGSGPLDRTTYMFTYIDPQAG 290
                                               AFPAGSGP DRTTYMFTY+DP  G
Sbjct: 287 VGACAHGFEKNTTSDIIFSSSSVKRAGNSGVQLFWEAFPAGSGPNDRTTYMFTYVDPTFG 346

Query: 291 SPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGI 350
            PKLEELLE +WDLMP YQ V L NL+I+RVI+GIFPTYRDSPLPAAF+RILQ GDASGI
Sbjct: 347 GPKLEELLEVFWDLMPAYQDVLLQNLDIRRVIFGIFPTYRDSPLPAAFDRILQVGDASGI 406

Query: 351 QSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK 410
           QSPVSFGGFGSLTRHLGRLS+G+ EAV GDF+D++SL LLNPYMPNLSASWLFQRAMS +
Sbjct: 407 QSPVSFGGFGSLTRHLGRLSSGICEAVEGDFLDAHSLQLLNPYMPNLSASWLFQRAMSVR 466

Query: 411 QQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSI 470
              +VSP FINELL+ NFQ MQKLGD VLRPFLQDVI+FGPL KTLGLVM+ +PQI+PSI
Sbjct: 467 PHVNVSPTFINELLFANFQSMQKLGDSVLRPFLQDVIQFGPLVKTLGLVMITRPQILPSI 526

Query: 471 FKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGSG 530
           FKQVG+ V+++WSGHF MLGYYT LST+ DP++RS + + PPR KY+W RYLEAW+YG+G
Sbjct: 527 FKQVGLGVILEWSGHFMMLGYYTFLSTYIDPILRSWVESLPPRDKYQWKRYLEAWRYGAG 586

Query: 531 LDYK 534
           LDY+
Sbjct: 587 LDYR 590

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115476458|ref|NP_001061825.1| Os08g0422000 [Oryza sativa Japonica Group] gi|37573089|dbj|BAC98659.1| Glycine/D-amino acid oxidases-like [Oryza sativa Japonica Group] gi|113623794|dbj|BAF23739.1| Os08g0422000 [Oryza sativa Japonica Group] gi|215695103|dbj|BAG90294.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640571|gb|EEE68703.1| hypothetical protein OsJ_27354 [Oryza sativa Japonica Group]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/545 (63%), Positives = 414/545 (75%), Gaps = 51/545 (9%)

Query: 39  PSRTRRIMESISVSGEVGGAGGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLF 98
           PSRT+ IM+ IS   EVGGAGGAYSY+ALKRLDQIWS+IC  Q+   ++ +VV+   G  
Sbjct: 69  PSRTQMIMDKISSGEEVGGAGGAYSYNALKRLDQIWSSICEAQS-DSKVPEVVTRVQGPL 127

Query: 99  SQSDLSDKAVGTFDVIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELL 158
              DL D +   FDV+VCGGTLGIF+ATALS+KGLRV I+ERN +KGREQEWNISRKEL+
Sbjct: 128 VDYDLGDGSE-IFDVLVCGGTLGIFVATALSYKGLRVGIIERNIIKGREQEWNISRKELM 186

Query: 159 ELVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL 218
           ELVE GIL E++I++  ++ FNP RC FE KGEIWVE+ILNLG+SPAKL+EI+K+RF+S 
Sbjct: 187 ELVEVGILSEEEIEQIISSDFNPTRCAFESKGEIWVENILNLGISPAKLVEIMKERFVSS 246

Query: 219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ------------ 266
           GG IFEG S+SSI  +++ AVL L++G  L   L+IDAMGNFSP+V+Q            
Sbjct: 247 GGAIFEGKSLSSISVHDDFAVLNLSDGGSLPCRLVIDAMGNFSPIVRQIRSGRKPDGVCL 306

Query: 267 -------------------------------------AFPAGSGPLDRTTYMFTYIDPQA 289
                                                 FPAGSGP DRTTYMFTY+DP +
Sbjct: 307 VVGTCARGFDRNTTSDIIFSSSSIKRAGNSGVQLFWEGFPAGSGPTDRTTYMFTYVDPHS 366

Query: 290 GSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG 349
           G PKLEELLE +WDLMP Y+ V L+NL+I RVI+GIFPTYR+SPLPAAF+R+LQ GDASG
Sbjct: 367 GGPKLEELLETFWDLMPAYEDVVLENLDIMRVIFGIFPTYRNSPLPAAFDRVLQVGDASG 426

Query: 350 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSA 409
           IQSPVSFGGFGSLTRHLGRLS G+YEAV GD +D+ SL LLNPYMPNLSASWLFQRAMSA
Sbjct: 427 IQSPVSFGGFGSLTRHLGRLSNGIYEAVSGDLLDARSLQLLNPYMPNLSASWLFQRAMSA 486

Query: 410 KQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPS 469
           + Q DVSP FINELL+ NF+ MQKLGD VLRPFLQDVI+FGPL KTLGLVM+ +PQI+PS
Sbjct: 487 RPQIDVSPTFINELLFANFESMQKLGDSVLRPFLQDVIQFGPLVKTLGLVMITRPQILPS 546

Query: 470 IFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRYLEAWKYGS 529
           IFKQ G  V+++WSGHF MLGYYT LSTF DP++R  + + P R KY+W RYLEAWKYG+
Sbjct: 547 IFKQAGPGVILNWSGHFVMLGYYTFLSTFIDPILRPWVESLPLRNKYQWKRYLEAWKYGA 606

Query: 530 GLDYK 534
           GLDY+
Sbjct: 607 GLDYR 611

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
TAIR|locus:2046422	585	AT2G32640 [Arabidopsis thalian	0.504	0.461	0.781	1.7e-189

TAIR|locus:2046422 AT2G32640 [Arabidopsis thaliana (taxid:3702)]

 Score = 1146 (408.5 bits), Expect = 1.7e-189, Sum P(2) = 1.7e-189
 Identities = 211/270 (78%), Positives = 239/270 (88%)

Query:   266 QAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGI 325
             +AFPAGSGPLDRTTYMFTY +PQ+ SP LE+LLE YW LMP+YQGV+LD LEI RV+YGI
Sbjct:   316 EAFPAGSGPLDRTTYMFTYTEPQSTSPSLEDLLEEYWKLMPKYQGVSLDELEILRVVYGI 375

Query:   326 FPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSY 385
             FPTYR+SPLPAAF+R+LQFGDASGIQSPVSFGGFGSLTRHLGRLS G+Y+A+ GD +DS 
Sbjct:   376 FPTYRNSPLPAAFDRVLQFGDASGIQSPVSFGGFGSLTRHLGRLSNGIYDAIDGDLLDSD 435

Query:   386 SLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQD 445
             SLS LNPYMPNLSASWLFQRAMSAKQQ DVS  F NELL+VNF CMQ+LGDPVLRPFLQD
Sbjct:   436 SLSKLNPYMPNLSASWLFQRAMSAKQQLDVSRGFTNELLHVNFSCMQRLGDPVLRPFLQD 495

Query:   446 VIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRS 505
             +I+FGPLAKTLGLVML KPQIIPSIF+QVGIPVL+DWS HFFMLG YTLLS + DP++R 
Sbjct:   496 IIQFGPLAKTLGLVMLTKPQIIPSIFRQVGIPVLLDWSVHFFMLGLYTLLSAYIDPLLRP 555

Query:   506 LLNAFPPRMKYEWNRYLEAWKYGSGLDYKL 535
              L   P + ++EW R LEAWKYG+GLDY+L
Sbjct:   556 SLEGLPSKTRFEWKRCLEAWKYGAGLDYEL 585

GO:0016117 "carotenoid biosynthetic process" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025926001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (583 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025310001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (504 aa)				•		•	•		0.927
	GSVIVG00016526001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (529 aa)				•		•	•		0.919
	GSVIVG00031131001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (583 aa)				•		•			0.903
	GSVIVG00027139001	SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (569 aa)				•		•			0.900
	GSVIVG00037718001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (306 aa)						•			0.899
	bch1	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (299 aa)						•			0.899
	GSVIVG00038227001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (216 aa)			•				•		0.525
	GSVIVG00006111001	SubName- Full=Chromosome chr14 scaffold_164, whole genome shotgun sequence; (332 aa)			•	•					0.523
	GSVIVG00022014001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (291 aa)			•	•					0.519
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•	•					0.506

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	535
PLN02697	529	lycopene epsilon cyclase	100.0
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	100.0
PLN02463	447	lycopene beta cyclase	99.97
PLN02985	514	squalene monooxygenase	99.97
PTZ00367	567	squalene epoxidase; Provisional	99.96
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.95
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.94
PRK08013	400	oxidoreductase; Provisional	99.94
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.93
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.93
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.93
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.93
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.93
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.93
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.93
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.93
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.93
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.93
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.92
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.92
PRK10015	429	oxidoreductase; Provisional	99.92
PRK06834	488	hypothetical protein; Provisional	99.92
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.92
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.92
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.92
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.92
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.92
PRK06185	407	hypothetical protein; Provisional	99.92
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.92
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.91
PRK09126	392	hypothetical protein; Provisional	99.91
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.91
PRK06184	502	hypothetical protein; Provisional	99.91
PRK10157	428	putative oxidoreductase FixC; Provisional	99.91
PRK06996	398	hypothetical protein; Provisional	99.91
PRK07045	388	putative monooxygenase; Reviewed	99.91
PRK08244	493	hypothetical protein; Provisional	99.91
PRK07190	487	hypothetical protein; Provisional	99.91
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.9
PRK07588	391	hypothetical protein; Provisional	99.9
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.9
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.9
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.89
PRK05868	372	hypothetical protein; Validated	99.89
PRK06847	375	hypothetical protein; Provisional	99.89
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.89
PRK06126	545	hypothetical protein; Provisional	99.89
PRK08163	396	salicylate hydroxylase; Provisional	99.88
PRK08294	634	phenol 2-monooxygenase; Provisional	99.88
PRK06753	373	hypothetical protein; Provisional	99.88
PRK06475	400	salicylate hydroxylase; Provisional	99.88
PRK11445	351	putative oxidoreductase; Provisional	99.88
PRK07538	413	hypothetical protein; Provisional	99.88
PRK07236	386	hypothetical protein; Provisional	99.86
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.86
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.84
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.84
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.84
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	99.73
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.68
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.64
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.58
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.45
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.41
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.38
COG2081	408	Predicted flavoproteins [General function predicti	99.37
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.35
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.35
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.34
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.27
COG0579	429	Predicted dehydrogenase [General function predicti	99.23
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.23
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.23
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.22
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.19
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.17
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.17
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.16
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.16
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.13
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.11
PRK05257	494	malate:quinone oxidoreductase; Validated	99.11
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.1
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.08
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.06
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.04
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.04
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.02
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.99
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.98
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.98
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.95
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.95
PRK07804	541	L-aspartate oxidase; Provisional	98.94
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.94
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.94
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.93
PRK08274	466	tricarballylate dehydrogenase; Validated	98.92
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.91
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.9
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.88
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.87
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.87
PLN02661	357	Putative thiazole synthesis	98.85
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.84
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.84
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.83
PRK06175	433	L-aspartate oxidase; Provisional	98.83
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.82
PRK07121	492	hypothetical protein; Validated	98.82
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.81
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.8
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.8
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.8
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.8
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.78
PRK08401	466	L-aspartate oxidase; Provisional	98.78
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.78
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.78
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.77
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.76
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.76
PLN02815	594	L-aspartate oxidase	98.74
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.73
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.72
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.72
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.72
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.71
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.67
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.66
PRK08275	554	putative oxidoreductase; Provisional	98.66
PRK08071	510	L-aspartate oxidase; Provisional	98.66
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.65
PRK12839	572	hypothetical protein; Provisional	98.64
PRK07395	553	L-aspartate oxidase; Provisional	98.63
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.63
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.63
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.62
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.62
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.59
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.59
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.57
PRK10262	321	thioredoxin reductase; Provisional	98.57
PRK06370	463	mercuric reductase; Validated	98.57
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.56
PRK06116	450	glutathione reductase; Validated	98.56
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.56
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.56
KOG2853	509	consensus Possible oxidoreductase [General functio	98.56
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.54
PRK14694	468	putative mercuric reductase; Provisional	98.54
PTZ00058	561	glutathione reductase; Provisional	98.54
PRK07512	513	L-aspartate oxidase; Provisional	98.54
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.54
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.52
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.5
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.49
PRK09077	536	L-aspartate oxidase; Provisional	98.48
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.47
PRK09897	534	hypothetical protein; Provisional	98.46
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.45
PLN02507	499	glutathione reductase	98.45
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.45
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.43
PLN02546	558	glutathione reductase	98.43
TIGR02053	463	MerA mercuric reductase. This model represents the	98.41
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.4
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.4
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.4
PRK13748	561	putative mercuric reductase; Provisional	98.39
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.38
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.37
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.37
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.37
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.36
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.34
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.33
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.33
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.32
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.3
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.29
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.27
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.25
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.25
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.24
PRK07233	434	hypothetical protein; Provisional	98.23
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.22
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.22
PTZ00052	499	thioredoxin reductase; Provisional	98.21
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.21
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.19
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.19
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.18
PRK14727	479	putative mercuric reductase; Provisional	98.18
PRK07846	451	mycothione reductase; Reviewed	98.18
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.16
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.16
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.14
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.13
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.13
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.11
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.09
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.08
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.08
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.08
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.07
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.04
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.01
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.99
PRK12831	464	putative oxidoreductase; Provisional	97.99
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.96
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.94
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.93
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.92
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.92
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.91
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.9
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.89
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.89
PLN02568	539	polyamine oxidase	97.88
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.87
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.86
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.79
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.79
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.78
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.78
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.77
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.75
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.75
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.74
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.73
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.72
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.67
COG3573	552	Predicted oxidoreductase [General function predict	97.66
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.64
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.63
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.63
PRK06116	450	glutathione reductase; Validated	97.61
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.6
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.57
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.56
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.55
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.54
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.54
PLN02507	499	glutathione reductase	97.53
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.51
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.49
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.48
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.47
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.46
TIGR02053	463	MerA mercuric reductase. This model represents the	97.45
PRK07846	451	mycothione reductase; Reviewed	97.45
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.45
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.44
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.44
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.44
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.43
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.42
KOG2852	380	consensus Possible oxidoreductase [General functio	97.41
PLN02576	496	protoporphyrinogen oxidase	97.38
PRK06370	463	mercuric reductase; Validated	97.38
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.37
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.37
PRK14694	468	putative mercuric reductase; Provisional	97.35
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.34
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.33
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.33
PRK14727	479	putative mercuric reductase; Provisional	97.33
PTZ00052	499	thioredoxin reductase; Provisional	97.32
PRK07208	479	hypothetical protein; Provisional	97.32
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.32
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.29
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.29
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.28
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.28
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.26
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.24
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.24
PRK02106	560	choline dehydrogenase; Validated	97.23
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.2
PRK13748	561	putative mercuric reductase; Provisional	97.19
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.19
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.19
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.18
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.15
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.12
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.11
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.07
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.06
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.05
PLN02268	435	probable polyamine oxidase	97.05
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.04
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.03
COG3349	485	Uncharacterized conserved protein [Function unknow	97.01
PTZ00058	561	glutathione reductase; Provisional	97.01
PLN02852	491	ferredoxin-NADP+ reductase	96.99
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.98
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	96.96
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.94
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.9
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.85
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.85
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.79
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	96.75
PLN02676	487	polyamine oxidase	96.74
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	96.73
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.72
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	96.67
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.65
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.65
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.65
PLN02785	587	Protein HOTHEAD	96.65
PLN02546	558	glutathione reductase	96.63
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.61
PLN02529	738	lysine-specific histone demethylase 1	96.55
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.55
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.54
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.51
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.51
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.51
PLN02612	567	phytoene desaturase	96.51
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.48
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.47
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.39
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.37
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.35
PLN02487	569	zeta-carotene desaturase	96.31
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.28
PRK10262	321	thioredoxin reductase; Provisional	96.17
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.08
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.03
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.01
PTZ00188	506	adrenodoxin reductase; Provisional	95.98
PRK13984	604	putative oxidoreductase; Provisional	95.93
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.93
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.85
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.85
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	95.81
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.77
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.74
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	95.73
PRK12770	352	putative glutamate synthase subunit beta; Provisio	95.7
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	95.64
PLN03000	881	amine oxidase	95.63
PLN02976	1713	amine oxidase	95.57
PRK12831	464	putative oxidoreductase; Provisional	95.47
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	95.43
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.26
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.23
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.15
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	95.01
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	94.88
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	94.72
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	94.63
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	94.44
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	94.42
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	94.16
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	94.06
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.92
PRK12814	652	putative NADPH-dependent glutamate synthase small	93.56
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	93.53
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	93.13
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	93.09
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	92.85
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	92.74
PRK12779	944	putative bifunctional glutamate synthase subunit b	92.74
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	92.72
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	92.71
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	92.47
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.32
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	92.31
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	92.28
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	92.21
PRK04148	134	hypothetical protein; Provisional	92.09
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.91
COG0569	225	TrkA K+ transport systems, NAD-binding component [	91.61
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	91.32
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	90.81
PLN02612	567	phytoene desaturase	90.73
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.72
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	90.33
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	90.25
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	90.0
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	89.65
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	89.58
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	89.55
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.53
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.53
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	89.46
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	89.44
PLN02676	487	polyamine oxidase	89.28
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.2
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.1
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	89.03
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	89.02
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	88.85
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	88.27
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	88.11
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.11
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	87.91
PRK13984	604	putative oxidoreductase; Provisional	87.66
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	87.55
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.37
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	87.26
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	87.23
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	87.2
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	87.18
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	87.14
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	87.01
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.96
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	86.86
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	86.85
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	86.6
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	86.42
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	86.23
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	86.23
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	86.06
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	85.98
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	85.62
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	85.55
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	85.51
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	85.5
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	85.4
PRK15116	268	sulfur acceptor protein CsdL; Provisional	85.28
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	84.84
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	84.82
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	84.69
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	84.68
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.54
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	84.52
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	84.31
PLN02268	435	probable polyamine oxidase	83.87
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	83.77
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	83.56
PRK07417	279	arogenate dehydrogenase; Reviewed	83.45
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	83.39
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	83.2
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	82.95
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	82.74
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	82.67
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	82.64
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	82.63
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	82.57
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	82.5
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	82.5
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	82.41
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	82.4
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	82.17
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	82.09
PRK06719	157	precorrin-2 dehydrogenase; Validated	81.91
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	81.8
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	81.7
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	81.63
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	81.51
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	81.32
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	81.31
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	81.0
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	80.96
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	80.94
PLN02353	473	probable UDP-glucose 6-dehydrogenase	80.91
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	80.76
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	80.71
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	80.67
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	80.66
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.65
PRK11730	715	fadB multifunctional fatty acid oxidation complex	80.63
PRK10669	558	putative cation:proton antiport protein; Provision	80.48
PRK08328	231	hypothetical protein; Provisional	80.47
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	80.46
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	80.28
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.25
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	80.23
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	80.19

>PLN02697 lycopene epsilon cyclase

Probab=100.00  E-value=1.3e-31  Score=289.16  Aligned_cols=404  Identities=16%  Similarity=0.188  Sum_probs=251.1

Q ss_pred             CCCchhhhhhccccccceecCCchhh----hhHHHHHhhHhHHhhhcccCccccccceeecCCCCCCCCCCCCCCCCccc
Q 009427           37 AVPSRTRRIMESISVSGEVGGAGGAY----SYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFD  112 (535)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~gg~~----~~~~l~~~d~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  112 (535)
                      .++.+|+++.|++++++++.++||++    ++++|+-++.. +++.      ..           ++..+   ..+..||
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~-----------~~~~~---~~~~~~D  110 (529)
T PLN02697         52 SGSESCVVVDEEFADEEDYIKAGGSELLFVQMQANKSMDEQ-SKIA------DK-----------LPPIS---IGDGTLD  110 (529)
T ss_pred             cCCcceeeeccccccHhhhhhccccchhHHHHHhcCCcccc-cccc------cc-----------CCCCC---cccCccc
Confidence            46999999999999999999999988    33333333322 2221      00           11111   1233699


Q ss_pred             EEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccCc
Q 009427          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE  191 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (535)
                      |+||| ||+|+++|+.|++.|++|+|||+....  ...+.++..+++.+   |+      +.++...|....+.+. .+.
T Consensus       111 VvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~--~~n~GvW~~~l~~l---gl------~~~i~~~w~~~~v~~~-~~~  178 (529)
T PLN02697        111 LVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF--TNNYGVWEDEFKDL---GL------EDCIEHVWRDTIVYLD-DDK  178 (529)
T ss_pred             EEEECcCHHHHHHHHHHHhCCCcEEEecCcccC--CCccccchhHHHhc---Cc------HHHHHhhcCCcEEEec-CCc
Confidence            99999 999999999999999999999986321  12244554554444   65      2233334432222221 111


Q ss_pred             ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE-EEcCCeEEEcCeEEEccCCChHHHHHhCCC
Q 009427          192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEGKILSSHLIIDAMGNFSPVVKQAFPA  270 (535)
Q Consensus       192 ~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v-~~~~G~~i~a~lVV~AdG~~S~v~~~~~p~  270 (535)
                      ....+.....+++..|.+.|.+++.+.|+++ .+++|+++..+++++.+ .+.+|.+++|++||+|||++|....+ ++.
T Consensus       179 ~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~-~~~  256 (529)
T PLN02697        179 PIMIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQ-YEV  256 (529)
T ss_pred             eeeccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhc-ccc
Confidence            1111221224899999999999999999988 57799999877676543 45677889999999999999942211 111


Q ss_pred             CCCCC--CceeEEEEEe-cCCCCCCChHHH-----------------HHHHhhhccCccCC-CC--------Cccc----
Q 009427          271 GSGPL--DRTTYMFTYI-DPQAGSPKLEEL-----------------LERYWDLMPEYQGV-TL--------DNLE----  317 (535)
Q Consensus       271 ~~~~~--~~~~~~~~y~-~~~~~~~~l~~~-----------------~~~~~~~~P~~~~~-~~--------~~~~----  317 (535)
                       .++.  ....+-..+. +..+.+++...+                 ..+|.|+||...+. ..        +.+.    
T Consensus       257 -~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~~l~~~~l  335 (529)
T PLN02697        257 -GGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKDAMPFDLL  335 (529)
T ss_pred             -CCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeeeccCCCCCHHHH
Confidence             0100  0111111111 001111111000                 12467788875421 00        0000    


Q ss_pred             -----------------hhcchhccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCC
Q 009427          318 -----------------IQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD  380 (535)
Q Consensus       318 -----------------~~r~~~g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~  380 (535)
                                       ..+...|.+|...  +++...+++++|||||+++||.||+|+..++..|..+|+.|+++++.+
T Consensus       336 ~~~L~~~l~~~Gi~~~~i~~~E~g~iPm~g--~~~~~~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~  413 (529)
T PLN02697        336 KKRLMSRLETMGIRILKTYEEEWSYIPVGG--SLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNV  413 (529)
T ss_pred             HHHHHHHHHhCCCCcceEEEEEeeeecCCC--CCcccCCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCC
Confidence                             0112336678755  444447899999999999999999999999999999999999999866


Q ss_pred             C---------CChhchhhhCCCCchhhh-----hHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhh
Q 009427          381 F---------VDSYSLSLLNPYMPNLSA-----SWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDV  446 (535)
Q Consensus       381 ~---------~~~~~l~~l~~y~~~~~~-----~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~  446 (535)
                      .         .+...   ++.|+..+..     ...+...+...  ..++++.+    +.+|..|.+||++.+..|+..+
T Consensus       414 ~~~~~~~~~~~~~~~---l~~~~~lw~~e~~r~~~~~~~g~~~l--~~l~~~~~----~~ff~~ff~L~~~~~~~Fl~~~  484 (529)
T PLN02697        414 SSGGKLGTSNSSNIS---MQAWNTLWPQERKRQRAFFLFGLALI--LQLDTEGI----RTFFVTFFRLPKWMWQGFLGST  484 (529)
T ss_pred             ccccccccccchHHH---HHHHHHhChHHHHHHHHHHHHHHHHH--HCCCHHHH----HHHHHHHHCCCHHHHhhHhhcc
Confidence            4         11222   2334433322     11222233322  23455554    5566666689999999999999


Q ss_pred             cCcchHHHHHHHHHhhCCCChHHHHhh--cChhhHhHhHHHHH
Q 009427          447 IKFGPLAKTLGLVMLNKPQIIPSIFKQ--VGIPVLVDWSGHFF  487 (535)
Q Consensus       447 ~~~~~l~~~~~~~~~~~P~~~~~~l~~--~~~~~~~~~~~~~~  487 (535)
                      .+..++..+++.++...|..+.+-+..  .+..+...++..|+
T Consensus       485 l~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  527 (529)
T PLN02697        485 LSSVDLILFALYMFVIAPNQLRMQLVRHLISDPTGATMIKTYL  527 (529)
T ss_pred             CCHHHHHHHHHHHHHhCChhHHHHHHHhhcCCchHhHHHHHhh
Confidence            999999999999999999888655543  45455556666664

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=100.00  E-value=3e-32  Score=270.14  Aligned_cols=371  Identities=18%  Similarity=0.208  Sum_probs=235.6

Q ss_pred             CCCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccc-cc-ccHHHHHHHHHcCCCC-hHhHHHHHhh---hc
Q 009427          107 AVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQE-WN-ISRKELLELVESGILV-EDDIDEATAT---KF  179 (535)
Q Consensus       107 ~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~-~~-is~~~l~~L~~lGl~~-~~~~~~~~~~---~~  179 (535)
                      .+.++|||||| |++|.++|+.|+|.|.||+||||+.-.. ++. ++ +++.....|.++|+.+ .+.+++....   .|
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EP-dRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~if  120 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEP-DRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIF  120 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccc-hHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEE
Confidence            34479999999 9999999999999999999999994322 222 11 3455566777779833 2223322221   22


Q ss_pred             CCC-cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC---eEEEEEcCC--eEEEcCeE
Q 009427          180 NPN-RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN---AAVLLLAEG--KILSSHLI  253 (535)
Q Consensus       180 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~---gv~v~~~~G--~~i~a~lV  253 (535)
                      ..+ ++....+.+-+..+..+..++..+|++.|++++......-+++..|+++..+++   |++...++|  .+..|.+.
T Consensus       121 k~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLT  200 (509)
T KOG1298|consen  121 KDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLT  200 (509)
T ss_pred             eCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceE
Confidence            222 222221222233344566789999999999999887655556667888866554   223333344  35789999


Q ss_pred             EEccCCChHHHHHhCCCCCCCCCceeEEEEEecC-----CC--------------------------------CCCChHH
Q 009427          254 IDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDP-----QA--------------------------------GSPKLEE  296 (535)
Q Consensus       254 V~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~-----~~--------------------------------~~~~l~~  296 (535)
                      |+|||++|.+|+.+.+....  +...+..++.-.     .+                                .-|+...
T Consensus       201 vVCDGcfSnlRrsL~~~~v~--~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~  278 (509)
T KOG1298|consen  201 VVCDGCFSNLRRSLCDPKVE--EVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIAN  278 (509)
T ss_pred             EEecchhHHHHHHhcCCccc--ccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEecCcccCCcccc
Confidence            99999999999986543110  112222222100     00                                0011100


Q ss_pred             -HHHHHhhhccCccCCCCCccch-hcchh---------ccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHH
Q 009427          297 -LLERYWDLMPEYQGVTLDNLEI-QRVIY---------GIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRH  365 (535)
Q Consensus       297 -~~~~~~~~~P~~~~~~~~~~~~-~r~~~---------g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~d  365 (535)
                       .+..|..-      ...++... .|..|         ..+|.....+......+++++|||.+|.||++|+||..++.|
T Consensus       279 gem~~~mk~------~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~D  352 (509)
T KOG1298|consen  279 GEMATYMKE------SVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSD  352 (509)
T ss_pred             hhHHHHHHH------hhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhH
Confidence             11111100      00011110 11111         224555544444557999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhchhhhCCCCchhhhhHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhh
Q 009427          366 LGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQD  445 (535)
Q Consensus       366 a~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~~~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~  445 (535)
                      ...|.+.|.. + .+..+.+.+..               ..-++...++.....||.+.++++++|....++.++++.+.
T Consensus       353 i~lLr~ll~p-l-~dL~d~ekv~~---------------~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~g  415 (509)
T KOG1298|consen  353 IVLLRRLLKP-L-PDLSDAEKVSD---------------YIKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKG  415 (509)
T ss_pred             HHHHHHHhcc-c-cccccHHHHHH---------------HHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            9988887643 1 12222222111               11123333455567899999999999999899999999999


Q ss_pred             hcCcchHHHHHHHHHhhCCCChHHHHhhcChhhHhHhHHHHHHHHHHHHHHhhhhhhHHhhhhcCCcchhHHHHHH
Q 009427          446 VIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVIRSLLNAFPPRMKYEWNRY  521 (535)
Q Consensus       446 ~~~~~~l~~~~~~~~~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (535)
                      |+++..+++.    +..+|   ..+|++++|+| +.+++|||++++|+++++|. |+|  |       .+.+|+-+
T Consensus       416 CfdYl~~GG~----c~sGp---v~lLsGlnP~P-l~Lv~HffAValy~i~~ll~-p~P--s-------P~riw~s~  473 (509)
T KOG1298|consen  416 CFDYLKRGGF----CVSGP---VALLSGLNPRP-LSLVLHFFAVALYGIYRLLS-PFP--S-------PRRIWESL  473 (509)
T ss_pred             HHHHHhcCCc----cccch---HHHhcCCCCCc-hHHHHHHHHHHHHHHHHHcC-CCC--C-------HHHHHHHH
Confidence            9999776544    56777   57889999998 59999999999999999998 444  2       24667654

>PLN02463 lycopene beta cyclase

Probab=99.97  E-value=1e-29  Score=270.55  Aligned_cols=355  Identities=17%  Similarity=0.168  Sum_probs=235.6

Q ss_pred             CCCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          107 AVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       107 ~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      ....|||+||| ||+|+++|+.|+++|++|+|||+.+.....+.+.++..+++.+   |+      .+++...|....+.
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~l---gl------~~~l~~~w~~~~v~   95 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEAL---GL------LDCLDTTWPGAVVY   95 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHC---Cc------HHHHHhhCCCcEEE
Confidence            44479999999 9999999999999999999999986444344444444444444   75      22333334322222


Q ss_pred             ccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHH
Q 009427          186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK  265 (535)
Q Consensus       186 ~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~  265 (535)
                      +....... .+.....+++..|.+.|.+++.+.|++++ .++|++++.+++++.|++++|.+++|++||+|||..|.+.+
T Consensus        96 ~~~~~~~~-~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~  173 (447)
T PLN02463         96 IDDGKKKD-LDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLVQ  173 (447)
T ss_pred             EeCCCCcc-ccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCccC
Confidence            21111111 12223347899999999999988899986 57999998888888888888888999999999999987654


Q ss_pred             HhCCCCCCCCCceeEEEEEe---c--CCCCCCC-----------------hHH---HHHHHhhhccCccCC---------
Q 009427          266 QAFPAGSGPLDRTTYMFTYI---D--PQAGSPK-----------------LEE---LLERYWDLMPEYQGV---------  311 (535)
Q Consensus       266 ~~~p~~~~~~~~~~~~~~y~---~--~~~~~~~-----------------l~~---~~~~~~~~~P~~~~~---------  311 (535)
                      ..-+.      ...+...|.   +  ..+.+++                 +.+   ....|.|.+|...+.         
T Consensus       174 ~~~~~------~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~  247 (447)
T PLN02463        174 YDKPF------NPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLV  247 (447)
T ss_pred             CCCCC------CccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeee
Confidence            21111      111111110   0  0111110                 000   012466777765431         


Q ss_pred             ---CC--Cccc----------------hhcchhccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHH
Q 009427          312 ---TL--DNLE----------------IQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS  370 (535)
Q Consensus       312 ---~~--~~~~----------------~~r~~~g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La  370 (535)
                         .+  ++++                ..+...+.||...  +++...+|+++|||||+++||.||+||..+++.+..+|
T Consensus       248 s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~IPmg~--~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a  325 (447)
T PLN02463        248 ARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGG--PLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVA  325 (447)
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeEeeCCC--CCCCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHH
Confidence               00  0110                0011225577755  44455689999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCC--------hhchhhhCCCCchhhhhHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhH
Q 009427          371 TGVYEAVRGDFVD--------SYSLSLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPF  442 (535)
Q Consensus       371 ~~l~~al~~~~~~--------~~~l~~l~~y~~~~~~~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f  442 (535)
                      ++|+++++.+..+        .+..+.+.+++.. ...-.|+.+|....  +++..    .++.||..|+++|+..+..|
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~-~~~~~~~fg~~~l~--~~~~~----~~~~ff~~ff~l~~~~~~gf  398 (447)
T PLN02463        326 DAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERR-RQREFFCFGMDILL--KLDLD----GTRRFFDAFFDLEPHYWHGF  398 (447)
T ss_pred             HHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHh-HhHHHHHhHHHHHH--cCChH----HHHHHHHHHHcCCHHHcccc
Confidence            9999999865441        2112223333221 12223333444322  22222    36788899999999999999


Q ss_pred             HhhhcCcchHHHHHHHHHhhCCCChHHHHhhcChhhHhHhHHHHH
Q 009427          443 LQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFF  487 (535)
Q Consensus       443 ~~~~~~~~~l~~~~~~~~~~~P~~~~~~l~~~~~~~~~~~~~~~~  487 (535)
                      +..+.+..+|..+++.++...|.-+.+.+...|+.++..++.++.
T Consensus       399 l~~~~~~~~l~~~~~~~f~~~~~~~r~~~~~~~~~~~~~~~~~~~  443 (447)
T PLN02463        399 LSSRLFLPELLLFGLSLFSHASNTSRLEIMAKGTVPLVKMINNLI  443 (447)
T ss_pred             ccCCCChHHHHHHHHHHHHhCCHHHHHHHHHcCChhHHHHHHHhc
Confidence            999999999999999999999999999999999999988887764

>PLN02985 squalene monooxygenase

Probab=99.97  E-value=5.1e-30  Score=278.06  Aligned_cols=363  Identities=16%  Similarity=0.173  Sum_probs=214.1

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHh------hhc
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA------TKF  179 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~------~~~  179 (535)
                      +.++||+||| |++|+++|+.|+++|++|+|+||....... ....+++..++.|.++|+.+.  ++....      ..+
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~--l~~~~~~~~~~~~v~  118 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDC--LEGIDAQKATGMAVY  118 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcch--hhhccCcccccEEEE
Confidence            3469999999 999999999999999999999998532211 111245556677777798542  221111      011


Q ss_pred             CCC-c--ccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe---EEEEEcCCe--EEEc
Q 009427          180 NPN-R--CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA---AVLLLAEGK--ILSS  250 (535)
Q Consensus       180 ~~~-~--~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~g---v~v~~~~G~--~i~a  250 (535)
                      ..+ .  ..+......+......+.+++..|.+.|++++.+. +++++++ +++++..+++.   +++..++|+  +++|
T Consensus       119 ~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~A  197 (514)
T PLN02985        119 KDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALA  197 (514)
T ss_pred             ECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEEC
Confidence            111 1  11110000000112234678899999999999876 5777755 67777555443   333334564  4679


Q ss_pred             CeEEEccCCChHHHHHhCCCCCCCCCceeEEEEEecCCC--CCCC-hHHHH--HHHhhh-------------ccCccCCC
Q 009427          251 HLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQA--GSPK-LEELL--ERYWDL-------------MPEYQGVT  312 (535)
Q Consensus       251 ~lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~--~~~~-l~~~~--~~~~~~-------------~P~~~~~~  312 (535)
                      |+||+|||.+|.+|++......   ....+...|.....  ..+. ...++  .....+             .|......
T Consensus       198 dLVVgADG~~S~vR~~l~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~~  274 (514)
T PLN02985        198 PLTVVCDGCYSNLRRSLNDNNA---EVLSYQVGYISKNCRLEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNIPS  274 (514)
T ss_pred             CEEEECCCCchHHHHHhccCCC---cceeEeEEEEEccccCCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCCCC
Confidence            9999999999999998643211   12233333321100  0110 00000  000000             11100000


Q ss_pred             --------------CCccc-hhcchh--c--------cccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHH
Q 009427          313 --------------LDNLE-IQRVIY--G--------IFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLG  367 (535)
Q Consensus       313 --------------~~~~~-~~r~~~--g--------~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~  367 (535)
                                    .+.+. ..+..+  +        .+|...........+|+++||||||++||++|||||+|++||.
T Consensus       275 ~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~  354 (514)
T PLN02985        275 IANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDIL  354 (514)
T ss_pred             cChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHH
Confidence                          00000 000011  0        0122111111112489999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCChhch-hhhCCCCchhhhhHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhh
Q 009427          368 RLSTGVYEAVRGDFVDSYSL-SLLNPYMPNLSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDV  446 (535)
Q Consensus       368 ~La~~l~~al~~~~~~~~~l-~~l~~y~~~~~~~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~  446 (535)
                      .|++.|.+. . +..+...+ ..++.          |++      .++...+.||.+..+++..+...+++.++.+-+.|
T Consensus       355 vLa~lL~~~-~-~~~~~~~~~~aL~~----------y~~------~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~  416 (514)
T PLN02985        355 ILRRLLQPL-S-NLGNANKVSEVIKS----------FYD------IRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGC  416 (514)
T ss_pred             HHHHHhhhc-c-cccchhHHHHHHHH----------HHH------HhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999988652 1 11011111 01111          221      12334568999999999988766778888899999


Q ss_pred             cCcchHHHHHHHHHhhCCCChHHHHhhcChhhHhHhHHHHHHHHHHHHHHhhhhhhH
Q 009427          447 IKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFADPVI  503 (535)
Q Consensus       447 ~~~~~l~~~~~~~~~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (535)
                      +.+..+++.    +..+|   ..+|+++.|+| +.++.|||++++|++...+. +++
T Consensus       417 f~y~~~g~~----~~~~~---~~ll~~~~~~p-~~l~~h~~~v~~~~~~~~~~-~~~  464 (514)
T PLN02985        417 YDYLCSGGF----RTSGM---MALLGGMNPRP-LSLIYHLCAITLSSIGHLLS-PFP  464 (514)
T ss_pred             HHHHHcCCc----ccccc---HHHHcCCCCCc-HHHHHHHHHHHHHHHHHHhc-ccC
Confidence            988666544    46777   57889999998 59999999999999999887 443

>PTZ00367 squalene epoxidase; Provisional

Probab=99.96  E-value=2.5e-27  Score=258.58  Aligned_cols=363  Identities=15%  Similarity=0.168  Sum_probs=200.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc--cccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW--NISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~--~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      ++|||||| |++|+++|+.|+++|++|+|+||++.....+..  .+++..++.|.++|+++  .++.. ..... +...+
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d--~l~~i-~~~~~-~~~v~  108 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEE--CAEGI-GMPCF-GYVVF  108 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChh--hHhhc-Cccee-eeEEE
Confidence            69999999 999999999999999999999998632211222  36677788888889853  22211 11110 00001


Q ss_pred             cccCccee----eeccccccCHHHHHHHHHHHH---HhCCCEEEeCceEEEEEEeCC-------eEEEEEcC--------
Q 009427          187 EGKGEIWV----EDILNLGVSPAKLIEIVKKRF---ISLGGVIFEGYSVSSICTYEN-------AAVLLLAE--------  244 (535)
Q Consensus       187 ~~~~~~~~----~~~~~~~v~~~~l~~~L~~~a---~~~G~~i~~~~~V~~i~~~~~-------gv~v~~~~--------  244 (535)
                      ..++....    ....+..++...+.+.|++++   ...++++++ .+|+++..+++       +++++..+        
T Consensus       109 ~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~  187 (567)
T PTZ00367        109 DHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENP  187 (567)
T ss_pred             ECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccccccc
Confidence            11111100    011123456788888888877   334778865 47888754433       35454433        


Q ss_pred             ---------------CeEEEcCeEEEccCCChHHHHHhCCCCCCCCCceeEEEE-EecCCCCCCChHH-HH--HHHhhhc
Q 009427          245 ---------------GKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFT-YIDPQAGSPKLEE-LL--ERYWDLM  305 (535)
Q Consensus       245 ---------------G~~i~a~lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~-y~~~~~~~~~l~~-~~--~~~~~~~  305 (535)
                                     +++++||+||+|||.+|.+|++.............+.-. ..+.....+.... ++  .+.+.++
T Consensus       188 f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~y  267 (567)
T PTZ00367        188 FREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILSY  267 (567)
T ss_pred             cccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEEE
Confidence                           567999999999999999999864321110001111000 0110000000000 00  0111112


Q ss_pred             cCccCC-------------------------CCCccc-hhcchh-------c---cccCCCCCCCCccCCCeeEeecCCC
Q 009427          306 PEYQGV-------------------------TLDNLE-IQRVIY-------G---IFPTYRDSPLPAAFNRILQFGDASG  349 (535)
Q Consensus       306 P~~~~~-------------------------~~~~~~-~~r~~~-------g---~~P~~~~~pl~~~~~rvlliGDAA~  349 (535)
                      |...+.                         ..+.+. ..+..+       +   .+|.....+.+...+|+++||||||
T Consensus       268 Pl~~~~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH  347 (567)
T PTZ00367        268 RLDDNELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARYPPAFPSIKGYVGIGDHAN  347 (567)
T ss_pred             EcCCCeEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCCccCCCCCEEEEEcccC
Confidence            211100                         000000 000001       0   1122111122223589999999999


Q ss_pred             cccccccccchHHHHHHHHHHHHHHHHHhCCCCChhchhhhCCCCchhh-hhHHHHHhhhhccCCCCChHHHHHHHHHHH
Q 009427          350 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLS-ASWLFQRAMSAKQQSDVSPDFINELLYVNF  428 (535)
Q Consensus       350 ~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~-~~~~~~~~m~~~~~~~~~~~~i~~ll~~~f  428 (535)
                      ++||++|||+|++++|+..|++.|....+....+..+...+   ...+. ....|++      .++.....|+.+...++
T Consensus       348 ~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v---~~aL~~~~~~Y~~------~Rk~~a~~i~~ls~aL~  418 (567)
T PTZ00367        348 QRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEI---EDAIQAAILSYAR------NRKTHASTINILSWALY  418 (567)
T ss_pred             CCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHH---HHHHHHhHHHHHH------HhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999865332100010000000   00010 0011221      22334567888888877


Q ss_pred             HhhhhCCchhhhhHHhhhcCcchHHHHHHHHHhhCCCChHHHHhhcChhhHhHhHHHHHHHHHHHHHHhhhh
Q 009427          429 QCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSGHFFMLGYYTLLSTFAD  500 (535)
Q Consensus       429 ~~l~~l~~~~~~~f~~~~~~~~~l~~~~~~~~~~~P~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (535)
                      ..+..  ..++    +.|+.+..+++    .+..+|   ..+|+++.|+| +.++.|||++++|+++.++..
T Consensus       419 ~lf~~--~~lr----~~~~~y~~~gg----~~~~~p---~~ll~g~~~~p-~~l~~h~~~v~~~~~~~~~~~  476 (567)
T PTZ00367        419 SVFSS--PALR----DACLDYFSLGG----ECVTGP---MSLLSGLDPSP-GGLLFHYFSVALYGVLNLIME  476 (567)
T ss_pred             HHhCh--HHHH----HHHHHHHhcCC----cccccc---HHHHcCCCCCc-HHHHHHHHHHHHHHHHHHhcc
Confidence            77765  3344    44444444433    346778   57889999998 599999999999999998873

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.95  E-value=4.2e-26  Score=240.32  Aligned_cols=335  Identities=18%  Similarity=0.190  Sum_probs=199.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      |||||| ||+|+++|+.|++.|++|+|||+.+..+....|.++...++.+   ++      +..+...|...........
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~   71 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDL---GL------ADCVEHVWPDVYEYRFPKQ   71 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhh---ch------hhHHhhcCCCceEEecCCc
Confidence            899999 9999999999999999999999986444455666555554443   43      2222223321110000011


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeEEEEEcCCeEEEcCeEEEccCCChHHHHHhCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFP  269 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~-~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p  269 (535)
                      ... .......+++..|.+.|.+.+.+.|++++ .++|++++.+ ++.+.|++.+|++++|++||+|||.+|.++....+
T Consensus        72 ~~~-~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~  149 (388)
T TIGR01790        72 PRK-LGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFP  149 (388)
T ss_pred             chh-cCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCC
Confidence            110 01122348899999999999998888886 5688888766 55677787778789999999999999855322212


Q ss_pred             CCCCCCCceeEEEEEecC-CCCCCC----------------hHHHHHHHhhhccCccCC------C------CCccchh-
Q 009427          270 AGSGPLDRTTYMFTYIDP-QAGSPK----------------LEELLERYWDLMPEYQGV------T------LDNLEIQ-  319 (535)
Q Consensus       270 ~~~~~~~~~~~~~~y~~~-~~~~~~----------------l~~~~~~~~~~~P~~~~~------~------~~~~~~~-  319 (535)
                      ...+ . ...+-..+... .+..++                .....++|.|++|...+.      .      ++.-... 
T Consensus       150 ~~~~-~-q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~~~~~~~~~~~~  227 (388)
T TIGR01790       150 LNVG-F-QVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLADRPALPRDRLRQ  227 (388)
T ss_pred             CCce-E-EEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccccCCCCCCHHHHHH
Confidence            1000 0 00000111100 000000                000012267778865321      0      0000000 


Q ss_pred             -----------------cchhccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCCC
Q 009427          320 -----------------RVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFV  382 (535)
Q Consensus       320 -----------------r~~~g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~  382 (535)
                                       +...+.+|....  .+...+|+++||||||+++|+||+|++.+++++..+++.|.+++..+  
T Consensus       228 ~l~~~~~~~g~~~~~i~~~~~~~iP~~~~--~~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~--  303 (388)
T TIGR01790       228 RILARLNAQGWQIKTIEEEEWGALPVGLP--GPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS--  303 (388)
T ss_pred             HHHHHHHHcCCeeeEEEeeeeEEEecccC--CCccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC--
Confidence                             011234565442  22246899999999999999999999999999999999999998654  


Q ss_pred             ChhchhhhCCCCch-hhhhHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhhcCcchHHHHHHHHHh
Q 009427          383 DSYSLSLLNPYMPN-LSASWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVML  461 (535)
Q Consensus       383 ~~~~l~~l~~y~~~-~~~~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~~~~~~l~~~~~~~~~  461 (535)
                      +...+..++++.+. ......+ +.+........+++..    ..+|..|.+++.+....|+....++.+..++++.++.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~----~~~f~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~  378 (388)
T TIGR01790       304 SELATAAWDGLWPTERRRQRYF-RLLGRMLFLALEPEER----RRFFQRFFGLPEELWERFLAARLSLPDLLRVLLRMFG  378 (388)
T ss_pred             HHHHHHHHHHhchHHHHHHHHH-HHHHHHHHHcCCHHHH----HHHHHHHHCCCHHHHhhhhcCCCCHHHHHHHHHHHhC
Confidence            23333333222111 1110011 1111111133445554    4455566568889999999999999999999988888


Q ss_pred             hCCCChH
Q 009427          462 NKPQIIP  468 (535)
Q Consensus       462 ~~P~~~~  468 (535)
                      +.|..+.
T Consensus       379 ~~~~~~~  385 (388)
T TIGR01790       379 QPPNPVR  385 (388)
T ss_pred             cCChhhh
Confidence            8786543

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.94  E-value=1.7e-25  Score=235.71  Aligned_cols=266  Identities=21%  Similarity=0.250  Sum_probs=165.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc--CCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN--TLKGREQEWNISRKELLELVESGILVEDDIDEATA-----TKFNP  181 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~--~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~  181 (535)
                      .+||+||| ||+|+++|+.|+++|++|+||||.  .+....+...++...++.|.++|+.  +.++..-.     ..+..
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~--~~i~~~~~~~~~~~~~~~   79 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLW--DRLEALGVPPLHVMVVDD   79 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCCh--hhhhhccCCceeeEEEec
Confidence            58999999 999999999999999999999998  2222334455788889999888973  22222111     00111


Q ss_pred             -C--cccccccCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEc-CCeEEEcCeEEEc
Q 009427          182 -N--RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDA  256 (535)
Q Consensus       182 -~--~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~-~G~~i~a~lVV~A  256 (535)
                       +  .+.+..  .........+.+.+..+.+.|.+++.+.+ ++++.+++|+.++.+++.+.++++ +|++++||+||+|
T Consensus        80 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgA  157 (387)
T COG0654          80 GGRRLLIFDA--AELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGA  157 (387)
T ss_pred             CCceeEEecc--cccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEEC
Confidence             1  111111  11111233556888999999999998886 799999999999998888888887 8999999999999


Q ss_pred             cCCChHHHHHhC-CCCCCCCCceeEEEEEecCC-CCCCChHHHH--HHHhhhccCcc-CC---------------CCCcc
Q 009427          257 MGNFSPVVKQAF-PAGSGPLDRTTYMFTYIDPQ-AGSPKLEELL--ERYWDLMPEYQ-GV---------------TLDNL  316 (535)
Q Consensus       257 dG~~S~v~~~~~-p~~~~~~~~~~~~~~y~~~~-~~~~~l~~~~--~~~~~~~P~~~-~~---------------~~~~~  316 (535)
                      ||.+|.+|++.. +................... +........+  .+.+.++|... ..               ..+..
T Consensus       158 DG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (387)
T COG0654         158 DGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDE  237 (387)
T ss_pred             CCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCHH
Confidence            999999999865 22111011111111111110 1000000000  11122223220 00               00111


Q ss_pred             chhcchhccccCC------------CCCCC------CccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427          317 EIQRVIYGIFPTY------------RDSPL------PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       317 ~~~r~~~g~~P~~------------~~~pl------~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~  378 (535)
                      .+.+.+...+|..            ...|+      +...+|++|+|||||.+||+.|||+|.+++|+..|+++|.++..
T Consensus       238 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~  317 (387)
T COG0654         238 EFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPR  317 (387)
T ss_pred             HHHHHHHHhcCcccccceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence            1100000001100            01122      22359999999999999999999999999999999999999886


Q ss_pred             C
Q 009427          379 G  379 (535)
Q Consensus       379 ~  379 (535)
                      .
T Consensus       318 ~  318 (387)
T COG0654         318 P  318 (387)
T ss_pred             c
Confidence            4

>PRK08013 oxidoreductase; Provisional

Probab=99.94  E-value=3.9e-25  Score=234.02  Aligned_cols=268  Identities=17%  Similarity=0.166  Sum_probs=160.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-------cccccccHHHHHHHHHcCCCChHhHHHH--Hh--h
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDEA--TA--T  177 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-------~~~~~is~~~l~~L~~lGl~~~~~~~~~--~~--~  177 (535)
                      ++||+||| ||+|+++|+.|+++|++|+||||.+....       .+...++...++.|.++|+++.-.-...  +.  .
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~   82 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME   82 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence            58999999 99999999999999999999999864221       1222356667777888898542110100  00  1


Q ss_pred             hcCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeE
Q 009427          178 KFNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (535)
Q Consensus       178 ~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lV  253 (535)
                      .+.+.   .+.+..  ..+......+.+++..|.+.|.+++.+. |++++.+++|++++.+++++.+++.+|++++||+|
T Consensus        83 ~~~~~~~~~~~~~~--~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lv  160 (400)
T PRK08013         83 VWDKDSFGRIAFDD--QSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLV  160 (400)
T ss_pred             EEeCCCCceEEEcc--cccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEE
Confidence            11111   111111  0010111235678899999999999885 78999999999998888889888888889999999


Q ss_pred             EEccCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCC-ChHHHH-HHHhhhccCccC--C---------------CC
Q 009427          254 IDAMGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSP-KLEELL-ERYWDLMPEYQG--V---------------TL  313 (535)
Q Consensus       254 V~AdG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~-~l~~~~-~~~~~~~P~~~~--~---------------~~  313 (535)
                      |+|||.+|.++++......+. .....+.+......+... ....+. ++++.++|...+  .               ..
T Consensus       161 VgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  240 (400)
T PRK08013        161 VGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAFLPLSDPHLCSIVWSLSPEEAQRMQQA  240 (400)
T ss_pred             EEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEEEECCCCCeEEEEEEcCHHHHHHHHcC
Confidence            999999999999853221110 011111111111001000 000000 112222332110  0               00


Q ss_pred             Cccchhcc---hhc-------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHH
Q 009427          314 DNLEIQRV---IYG-------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA  376 (535)
Q Consensus       314 ~~~~~~r~---~~g-------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~a  376 (535)
                      ....+.+.   .++             .+|.... ..+.+ .+|++|+|||||.++|+.|||+|.+++||..|+++|...
T Consensus       241 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~  319 (400)
T PRK08013        241 PEEEFNRALAIAFDNRLGLCELESERQVFPLTGR-YARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRL  319 (400)
T ss_pred             CHHHHHHHHHHHHhHhhCceEecCCccEEeccee-ecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHH
Confidence            00000000   000             0111110 11222 599999999999999999999999999999999999887


Q ss_pred             HhCC
Q 009427          377 VRGD  380 (535)
Q Consensus       377 l~~~  380 (535)
                      +..+
T Consensus       320 ~~~~  323 (400)
T PRK08013        320 HRQG  323 (400)
T ss_pred             HhcC
Confidence            6544

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.93  E-value=7.1e-25  Score=231.18  Aligned_cols=266  Identities=18%  Similarity=0.180  Sum_probs=159.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-------cccccccHHHHHHHHHcCCCChHhHHHHHhh----
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-------EQEWNISRKELLELVESGILVEDDIDEATAT----  177 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-------~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~----  177 (535)
                      +|||+||| ||+|+++|+.|+++|++|+|||+.+....       .+...++...++.|..+|+++.  ++.....    
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~--~~~~~~~~~~~   82 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDA--VQAMRSHPYRR   82 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhh--hhhhhCcccce
Confidence            69999999 99999999999999999999999853211       1222356677777777898542  2211000    


Q ss_pred             ----hcCCCcccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427          178 ----KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (535)
Q Consensus       178 ----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l  252 (535)
                          .+....+.+.. .. .......+.+++..|.+.|.+++.+. |++++.+++|+++..+++++.|.+++|++++||+
T Consensus        83 ~~~~~~~~~~~~~~~-~~-~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~  160 (391)
T PRK08020         83 LETWEWETAHVVFDA-AE-LKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKL  160 (391)
T ss_pred             EEEEeCCCCeEEecc-cc-cCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCE
Confidence                01111121111 00 00112235678889999999998876 8999999999999888888888887888899999


Q ss_pred             EEEccCCChHHHHHhCCCCCCCC-CceeEEEEEecCCC-CCCChHHHH-HHHhhhccCccCC----------------CC
Q 009427          253 IIDAMGNFSPVVKQAFPAGSGPL-DRTTYMFTYIDPQA-GSPKLEELL-ERYWDLMPEYQGV----------------TL  313 (535)
Q Consensus       253 VV~AdG~~S~v~~~~~p~~~~~~-~~~~~~~~y~~~~~-~~~~l~~~~-~~~~~~~P~~~~~----------------~~  313 (535)
                      ||+|||.+|.+++........+. ....+.+......+ .......++ ++...++|...+.                ..
T Consensus       161 vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~~~~~~  240 (391)
T PRK08020        161 VIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASLVWYDSPARIRQLQAM  240 (391)
T ss_pred             EEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEEEEECCHHHHHHHHCC
Confidence            99999999999887422211111 11111111111000 000000000 1111112211100                00


Q ss_pred             Cccchhcch---------------hccccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHH
Q 009427          314 DNLEIQRVI---------------YGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV  377 (535)
Q Consensus       314 ~~~~~~r~~---------------~g~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al  377 (535)
                      +.-.+.+.+               .+.+|.... +.+.+ .+|++++|||||.+||+.|||+|.+++||..|++.|.+..
T Consensus       241 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~-~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~  319 (391)
T PRK08020        241 SMAQLQQEIAAHFPARLGAVTPVAAGAFPLTRR-HALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNAR  319 (391)
T ss_pred             CHHHHHHHHHHHhhhhccceEeccccEeeccee-ehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHH
Confidence            000000000               011222211 12222 5999999999999999999999999999999999998876


Q ss_pred             hCC
Q 009427          378 RGD  380 (535)
Q Consensus       378 ~~~  380 (535)
                      +.+
T Consensus       320 ~~~  322 (391)
T PRK08020        320 SYG  322 (391)
T ss_pred             hcC
Confidence            543

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.93  E-value=7.3e-25  Score=231.29  Aligned_cols=266  Identities=22%  Similarity=0.249  Sum_probs=160.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC------cccccccHHHHHHHHHcCCCChHhHHHHHhhh----
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATATK----  178 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~------~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~----  178 (535)
                      .+||+||| ||+|+++|+.|+++|++|+||||.+....      .+...++...++.|.++|+++.  ++......    
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~--~~~~~~~~~~~~   83 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPA--VRAARAQPYRRM   83 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhh--hhHhhCCcccEE
Confidence            68999999 99999999999999999999999864321      1223466777778888898542  22111111    


Q ss_pred             --cCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeE
Q 009427          179 --FNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (535)
Q Consensus       179 --~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lV  253 (535)
                        +...   .+.+..  .........+.+++..+.+.|.+.+.+.|++++.+++|++++.+++++++++++|++++|++|
T Consensus        84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v  161 (392)
T PRK08773         84 RVWDAGGGGELGFDA--DTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA  161 (392)
T ss_pred             EEEeCCCCceEEech--hccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence              1110   111110  000111234567888999999999998999999999999998888888888878888999999


Q ss_pred             EEccCCChHHHHHhCCCCCCCCCceeEEEEEecC-CCCCCChHH-HH-HHHhhhccCccCC----------------CCC
Q 009427          254 IDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDP-QAGSPKLEE-LL-ERYWDLMPEYQGV----------------TLD  314 (535)
Q Consensus       254 V~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~-~~~~~~l~~-~~-~~~~~~~P~~~~~----------------~~~  314 (535)
                      |+|||.+|.+++..................+... .+....... +. ++.+.++|...+.                ..+
T Consensus       162 V~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~  241 (392)
T PRK08773        162 IAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSIVWTLPDAEAERVLALD  241 (392)
T ss_pred             EEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceEEEEECCHHHHHHHHcCC
Confidence            9999999988876321111000000111111111 010000000 00 1111222221100                000


Q ss_pred             ccchhc---chh----c---------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHH
Q 009427          315 NLEIQR---VIY----G---------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV  377 (535)
Q Consensus       315 ~~~~~r---~~~----g---------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al  377 (535)
                      ...+.+   ..+    +         .+|.... ..+.+ .+|++|+|||||.++|+.|||+|.+++||..|+++|.+++
T Consensus       242 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~  320 (392)
T PRK08773        242 EAAFSRELTQAFAARLGEVRVASPRTAFPLRRQ-LVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAH  320 (392)
T ss_pred             HHHHHHHHHHHHhhhhcCeEecCCccEeechhh-hhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHH
Confidence            000000   001    0         0111111 11222 5999999999999999999999999999999999999887


Q ss_pred             hCC
Q 009427          378 RGD  380 (535)
Q Consensus       378 ~~~  380 (535)
                      ..+
T Consensus       321 ~~~  323 (392)
T PRK08773        321 ARR  323 (392)
T ss_pred             hcC
Confidence            543

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.93  E-value=1.2e-24  Score=228.22  Aligned_cols=255  Identities=16%  Similarity=0.208  Sum_probs=157.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-----CcccccccHHHHHHHHHcCCCChHhHHHHHh-----hhc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-----REQEWNISRKELLELVESGILVEDDIDEATA-----TKF  179 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-----~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~  179 (535)
                      +||+||| ||+|+++|+.|++.|++|+|+|+.+...     ..+...++...++.|.++|+++  .++....     ..+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~--~l~~~~~~~~~~~~~   79 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWE--ELEKFVAEMQDIYVV   79 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHH--HHHhhcCCCcEEEEE
Confidence            7999999 9999999999999999999999874321     1234457778888888889853  2222111     011


Q ss_pred             CCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEE
Q 009427          180 NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIID  255 (535)
Q Consensus       180 ~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~  255 (535)
                      ++.   ...+...    ......+.+++..|.+.|.+++.+.+ ++++.+++++++..+++++++.+.++ +++||+||+
T Consensus        80 ~~~g~~~~~~~~~----~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIg  154 (374)
T PRK06617         80 DNKASEILDLRND----ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLII  154 (374)
T ss_pred             ECCCceEEEecCC----CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEE
Confidence            111   1111100    01123466889999999999998875 78899999999988888888888666 899999999


Q ss_pred             ccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCC-ChHHH-HHHHhhhccCccCC------C-----------CCcc
Q 009427          256 AMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSP-KLEEL-LERYWDLMPEYQGV------T-----------LDNL  316 (535)
Q Consensus       256 AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~-~l~~~-~~~~~~~~P~~~~~------~-----------~~~~  316 (535)
                      |||.+|.+|++.+.....+.....+.+......+... ..+.+ ..+.++++|...+.      .           .+.-
T Consensus       155 ADG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~~~~~~~~~~~~~~  234 (374)
T PRK06617        155 CDGANSKVRSHYFANEIEKPYQTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAALIVNLPVE  234 (374)
T ss_pred             eCCCCchhHHhcCCCcccccCCeEEEEEEeccCCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCCHHHHHHHHcCCHH
Confidence            9999999998865432111111222222111000000 00000 11223344432210      0           0000


Q ss_pred             chh---cchh----c---------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHH
Q 009427          317 EIQ---RVIY----G---------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV  373 (535)
Q Consensus       317 ~~~---r~~~----g---------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l  373 (535)
                      .+.   ...+    +         .+|.... ..+.+ .+|++|+|||||.+||+.|||+|.+++|+..|++.|
T Consensus       235 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L  307 (374)
T PRK06617        235 EVRFLTQRNAGNSLGKITIDSEISSFPLKAR-IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIV  307 (374)
T ss_pred             HHHHHHHHhhchhcCceeeccceeEEEeeee-eccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHH
Confidence            000   0000    1         1122111 11222 599999999999999999999999999999998876

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.93  E-value=4.6e-24  Score=226.14  Aligned_cols=266  Identities=17%  Similarity=0.137  Sum_probs=159.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC---------CCcccccccHHHHHHHHHcCCCChHhHHHHHh---
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK---------GREQEWNISRKELLELVESGILVEDDIDEATA---  176 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~---------~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~---  176 (535)
                      ++||+||| ||+|+++|+.|+++|++|+|+|+.+..         ...+...++...++.|.++|+++  .+.....   
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~--~l~~~~~~~~   79 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWD--GIAARRASPY   79 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhh--hhhHhhCccc
Confidence            48999999 999999999999999999999998621         01122346677778888889853  2221100   


Q ss_pred             ---hhcCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEc
Q 009427          177 ---TKFNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSS  250 (535)
Q Consensus       177 ---~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a  250 (535)
                         ..++..   .+.|... . ......++.+++..+.+.|.+.+.+.|++++.+++|++++.++++++|++++|++++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a  157 (405)
T PRK05714         80 SEMQVWDGSGTGQIHFSAA-S-VHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRA  157 (405)
T ss_pred             eeEEEEcCCCCceEEeccc-c-cCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence               111111   1111100 0 0011223457788889999999888899999999999998888888888888888999


Q ss_pred             CeEEEccCCChHHHHHhCCCCCCCCCceeEEEE-EecCCCCCCC-hHHHH-HHHhhhccCccC-----C----C------
Q 009427          251 HLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFT-YIDPQAGSPK-LEELL-ERYWDLMPEYQG-----V----T------  312 (535)
Q Consensus       251 ~lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~-y~~~~~~~~~-l~~~~-~~~~~~~P~~~~-----~----~------  312 (535)
                      |+||+|||.+|.++++...............+. .....+.... ...+. .+.+.++|...+     .    .      
T Consensus       158 ~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~  237 (405)
T PRK05714        158 PLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEEA  237 (405)
T ss_pred             CEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHHH
Confidence            999999999999998853321110000111111 1100000000 00000 112222232100     0    0      


Q ss_pred             -----CCccchhcc---hhc-------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHH
Q 009427          313 -----LDNLEIQRV---IYG-------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS  370 (535)
Q Consensus       313 -----~~~~~~~r~---~~g-------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La  370 (535)
                           ...-.+.+.   .++             .+|.... ..+.+ .+|++|+|||||.++|+.|||+|.+++||..|+
T Consensus       238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La  316 (405)
T PRK05714        238 ERLMALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQR-HAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLA  316 (405)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEEeccee-ehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHH
Confidence                 000000000   000             0111110 11223 599999999999999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 009427          371 TGVYEAVRGD  380 (535)
Q Consensus       371 ~~l~~al~~~  380 (535)
                      ++|..++..+
T Consensus       317 ~~L~~~~~~g  326 (405)
T PRK05714        317 EVLLHAAERG  326 (405)
T ss_pred             HHHHHHHhcC
Confidence            9998876544

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.93  E-value=2.9e-24  Score=227.03  Aligned_cols=275  Identities=22%  Similarity=0.258  Sum_probs=180.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc--cccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW--NISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~--~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      +|||+||| ||||++||+.||++|++|+|+||....+...++  .++...++.+   ......+++..+.    ...+.+
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l---~~~~~~~i~~~v~----~~~~~~   75 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEEL---IPDFDEEIERKVT----GARIYF   75 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHh---CCCcchhhheeee----eeEEEe
Confidence            69999999 999999999999999999999998766554333  3666777666   3211111222111    111111


Q ss_pred             cccCcce--eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-eEEEcCeEEEccCCChHH
Q 009427          187 EGKGEIW--VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       187 ~~~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G-~~i~a~lVV~AdG~~S~v  263 (535)
                      . .....  ......+.+++..|.++|+++|.++|++++.+++++++..+++++++.+..+ .+++|++||+|||.+|.+
T Consensus        76 ~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l  154 (396)
T COG0644          76 P-GEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSAL  154 (396)
T ss_pred             c-CCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHH
Confidence            1 11111  1112367789999999999999999999999999999999888877666443 789999999999999999


Q ss_pred             HHHhCCCCCCCCCceeEEEEEecCCCCC--CCh-HH-------HHHHHhhhccCccCC-------CCCc--cc-----hh
Q 009427          264 VKQAFPAGSGPLDRTTYMFTYIDPQAGS--PKL-EE-------LLERYWDLMPEYQGV-------TLDN--LE-----IQ  319 (535)
Q Consensus       264 ~~~~~p~~~~~~~~~~~~~~y~~~~~~~--~~l-~~-------~~~~~~~~~P~~~~~-------~~~~--~~-----~~  319 (535)
                      .+++-.. .  .....+...+.+.....  ... ..       -..+|.|++|...+.       ....  ..     +.
T Consensus       155 ~~~lg~~-~--~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~~~~~~~~~~l~  231 (396)
T COG0644         155 ARKLGLK-D--RKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDDPSLSPFLELLE  231 (396)
T ss_pred             HHHhCCC-C--CChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCCcCCCchHHHHH
Confidence            9885433 1  12333333333221111  111 11       125788999987531       1111  00     00


Q ss_pred             c------------------chhccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCC
Q 009427          320 R------------------VIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF  381 (535)
Q Consensus       320 r------------------~~~g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~  381 (535)
                      +                  ...+.+|.......+...+|+++|||||++++|++|+|+..||..+..+|+.|.++++.+ 
T Consensus       232 ~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-  310 (396)
T COG0644         232 RFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-  310 (396)
T ss_pred             HHHhCcccchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-
Confidence            0                  001345555422222347999999999999999999999999999999999999998765 


Q ss_pred             CChhchhhhCCCCchhhhhH
Q 009427          382 VDSYSLSLLNPYMPNLSASW  401 (535)
Q Consensus       382 ~~~~~l~~l~~y~~~~~~~~  401 (535)
                        .+.|+   .|++.+...+
T Consensus       311 --~~~l~---~Y~~~~~~~~  325 (396)
T COG0644         311 --EEALA---EYERLLRKSL  325 (396)
T ss_pred             --hhHHH---HHHHHHHHHH
Confidence              33343   3555554443

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.93  E-value=4.8e-24  Score=228.00  Aligned_cols=259  Identities=20%  Similarity=0.222  Sum_probs=155.9

Q ss_pred             CCCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh--hhcCCCc
Q 009427          107 AVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA--TKFNPNR  183 (535)
Q Consensus       107 ~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~--~~~~~~~  183 (535)
                      +..+|||+||| ||+|+++|+.||++|++|+|+||...........++...++.+   |+. .+.++..+.  ..+.|..
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~l---gl~-~~~~~~~i~~~~~~~p~~  111 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEF---DLP-LDIIDRKVTKMKMISPSN  111 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhh---cCc-HHHHHHHhhhheEecCCc
Confidence            44479999999 9999999999999999999999984322112223555555444   763 222222221  2223321


Q ss_pred             ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEEcC-------C--eEEEcC
Q 009427          184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAE-------G--KILSSH  251 (535)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~---~~gv~v~~~~-------G--~~i~a~  251 (535)
                      ..+...... .....-..+++..|.+.|.++|.+.|++++.+ .++++...   ++.++|++.+       |  .+++||
T Consensus       112 ~~v~~~~~~-~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~  189 (450)
T PLN00093        112 VAVDIGKTL-KPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVD  189 (450)
T ss_pred             eEEEecccC-CCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeC
Confidence            111101000 00001123799999999999999999999865 57777642   2345555422       3  479999


Q ss_pred             eEEEccCCChHHHHHhCCCCCCCCCceeEEEEEecC--CCC-----CCChHH-HH------HHHhhhccCccCCC-----
Q 009427          252 LIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDP--QAG-----SPKLEE-LL------ERYWDLMPEYQGVT-----  312 (535)
Q Consensus       252 lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~--~~~-----~~~l~~-~~------~~~~~~~P~~~~~~-----  312 (535)
                      +||+|||++|.++++.-.. .     ..+.+.+...  .+.     .+...+ ++      +.|.|+||......     
T Consensus       190 ~VIgADG~~S~vrr~lg~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~~~VG~g~  263 (450)
T PLN00093        190 AVIGADGANSRVAKDIDAG-D-----YDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGT  263 (450)
T ss_pred             EEEEcCCcchHHHHHhCCC-C-----cceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCcEEEEEEE
Confidence            9999999999999885221 1     1122222111  110     011111 11      24779999864210     


Q ss_pred             -CCccchh------c-----ch---------hccccCCCCCCCC-ccCCCeeEeecCCCcccccccccchHHHHHHHHHH
Q 009427          313 -LDNLEIQ------R-----VI---------YGIFPTYRDSPLP-AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS  370 (535)
Q Consensus       313 -~~~~~~~------r-----~~---------~g~~P~~~~~pl~-~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La  370 (535)
                       .......      +     .+         .+.+|..   +.+ ...+|++++|||||+++|++|+||+.||+++..++
T Consensus       264 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ip~~---~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AA  340 (450)
T PLN00093        264 VVNKPAIKKYQRATRNRAKDKIAGGKIIRVEAHPIPEH---PRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCA  340 (450)
T ss_pred             ccCCCChHHHHHHHHHHhhhhcCCCeEEEEEEEEcccc---cccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHH
Confidence             0000000      0     00         0112321   122 23589999999999999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 009427          371 TGVYEAVRGD  380 (535)
Q Consensus       371 ~~l~~al~~~  380 (535)
                      +.+.++++.+
T Consensus       341 e~i~~~~~~g  350 (450)
T PLN00093        341 EAIVEGSENG  350 (450)
T ss_pred             HHHHHHHhcC
Confidence            9999998754

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.93  E-value=2.1e-24  Score=227.34  Aligned_cols=262  Identities=20%  Similarity=0.228  Sum_probs=157.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCCC-
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA-----TKFNPN-  182 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~~-  182 (535)
                      .+||+||| ||+|+++|+.|+++|++|+|||+.......+.+.++...++.|.++|+++  .++....     ..+... 
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~--~~~~~~~~~~~~~~~~~~g   84 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWA--RLAPHAAPLQSMRIVDATG   84 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchh--hhHhhcceeeEEEEEeCCC
Confidence            58999999 99999999999999999999999865433445556666677777778753  2221110     111111 


Q ss_pred             cc------cccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEc
Q 009427          183 RC------GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (535)
Q Consensus       183 ~~------~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~A  256 (535)
                      ..      .+..  .........+.+++..+.+.|.+.+.+.++..+.+++|++++.+++++.|++++|++++||+||+|
T Consensus        85 ~~~~~~~~~~~~--~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~A  162 (388)
T PRK07494         85 RLIRAPEVRFRA--AEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGA  162 (388)
T ss_pred             CCCCCceEEEcH--HhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEe
Confidence            00      0000  000112234567888999999999988765558899999998888889888888888999999999


Q ss_pred             cCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCCChHHH--HHHHhhhccCccCC----------------CCCccc
Q 009427          257 MGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSPKLEEL--LERYWDLMPEYQGV----------------TLDNLE  317 (535)
Q Consensus       257 dG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~~l~~~--~~~~~~~~P~~~~~----------------~~~~~~  317 (535)
                      ||.+|.++++........ .....+.+.+....+......++  ..+++.++|...+.                ..+.-.
T Consensus       163 dG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~  242 (388)
T PRK07494        163 DGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAA  242 (388)
T ss_pred             cCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHH
Confidence            999999988742211110 11112222221111100000000  01222223321100                000000


Q ss_pred             hhc-------chhccc---cCCCCCCC-----Cc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427          318 IQR-------VIYGIF---PTYRDSPL-----PA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE  375 (535)
Q Consensus       318 ~~r-------~~~g~~---P~~~~~pl-----~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~  375 (535)
                      +.+       ...+.+   ......|+     +. ..+|++++|||||.+||++|||+|.+++||..|++.|.+
T Consensus       243 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~  316 (388)
T PRK07494        243 LSAAIEERMQSMLGKLTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVED  316 (388)
T ss_pred             HHHHHHHHHhhhcCCeEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHh
Confidence            000       000111   00001121     12 259999999999999999999999999999999999876

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.93  E-value=4.6e-24  Score=225.76  Aligned_cols=264  Identities=23%  Similarity=0.261  Sum_probs=162.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCC---cccccccHHHHHHHHHcCCCChHhHHHHHh-----hhc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATA-----TKF  179 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~---~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~  179 (535)
                      |||+||| ||+|+++|+.|+++|  ++|+|+||.+....   .+...++...++.|..+|+++  .+.....     ..+
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~--~~~~~~~~~~~~~~~   79 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWD--EIAPEAQPITDMVIT   79 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChh--hhhhhcCcccEEEEE
Confidence            8999999 999999999999995  99999999864221   233346777788888889853  2221110     001


Q ss_pred             CCC-----c---ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcC
Q 009427          180 NPN-----R---CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSH  251 (535)
Q Consensus       180 ~~~-----~---~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~  251 (535)
                      ...     .   ..+.  ..........+.+++..+.+.|.+.+.+.|++++.+++|++++.+++++.+++++|.+++||
T Consensus        80 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad  157 (403)
T PRK07333         80 DSRTSDPVRPVFLTFE--GEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEAR  157 (403)
T ss_pred             eCCCCCCCccceEEec--ccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeC
Confidence            100     0   0110  00000111224578899999999999989999999999999988888888888888889999


Q ss_pred             eEEEccCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCCChHH-H-HHHHhhhccCccCC-------C---------
Q 009427          252 LIIDAMGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSPKLEE-L-LERYWDLMPEYQGV-------T---------  312 (535)
Q Consensus       252 lVV~AdG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~~l~~-~-~~~~~~~~P~~~~~-------~---------  312 (535)
                      +||+|||.+|.++++........ .....+.+.+....+....... + ..++++++|...+.       .         
T Consensus       158 ~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~  237 (403)
T PRK07333        158 LLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKGNRSSLVWTERTADAERLVA  237 (403)
T ss_pred             EEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCCceEEeECCCCCeEEEEECCHHHHHHHHC
Confidence            99999999999887742211110 1112222222111010000000 1 12334445543211       0         


Q ss_pred             CCccchhc---chhc-c------------ccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427          313 LDNLEIQR---VIYG-I------------FPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE  375 (535)
Q Consensus       313 ~~~~~~~r---~~~g-~------------~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~  375 (535)
                      .+...+..   ..++ .            +|... ...+.+ .+|++++|||||.++|++|||+|.+++||..|+++|.+
T Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~  316 (403)
T PRK07333        238 LDDLVFEAELEQRFGHRLGELKVLGKRRAFPLGL-TLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVE  316 (403)
T ss_pred             CCHHHHHHHHHHHhhhhcCceEeccCccEeechh-hhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHH
Confidence            00000000   0011 0            11100 011222 59999999999999999999999999999999999988


Q ss_pred             HHhC
Q 009427          376 AVRG  379 (535)
Q Consensus       376 al~~  379 (535)
                      .++.
T Consensus       317 ~~~~  320 (403)
T PRK07333        317 AARL  320 (403)
T ss_pred             HHhc
Confidence            8753

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.93  E-value=3.9e-24  Score=227.23  Aligned_cols=268  Identities=21%  Similarity=0.218  Sum_probs=156.5

Q ss_pred             CCCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC---cccccccHHHHHHHHHcCCCChHhHHHHHhh----h
Q 009427          107 AVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR---EQEWNISRKELLELVESGILVEDDIDEATAT----K  178 (535)
Q Consensus       107 ~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~---~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~----~  178 (535)
                      .+.++||+||| ||+|+++|+.|+++|++|+|+||.+....   .+...++...++.|.++|+++  ++......    .
T Consensus        15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~--~l~~~~~~~~~~~   92 (415)
T PRK07364         15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWE--KILPQIGKFRQIR   92 (415)
T ss_pred             CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhh--hhHhhcCCccEEE
Confidence            34469999999 99999999999999999999999864321   223346777888888889843  22221110    0


Q ss_pred             c-CCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcC-C--eEEEc
Q 009427          179 F-NPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAE-G--KILSS  250 (535)
Q Consensus       179 ~-~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~-G--~~i~a  250 (535)
                      + +..   ...+... .. ......+.+.+..+.+.|.+++.+. +++++.+++|++++.+++++.|++++ +  .+++|
T Consensus        93 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~a  170 (415)
T PRK07364         93 LSDADYPGVVKFQPT-DL-GTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQS  170 (415)
T ss_pred             EEeCCCCceeeeccc-cC-CCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEee
Confidence            1 000   1111100 00 0001112234456888898888775 68999999999998888888888753 2  46999


Q ss_pred             CeEEEccCCChHHHHHhCCCCCCCCC-ceeEEEEEecCCC-CCCChHHH-HHHHhhhccCccCC-----CCC--------
Q 009427          251 HLIIDAMGNFSPVVKQAFPAGSGPLD-RTTYMFTYIDPQA-GSPKLEEL-LERYWDLMPEYQGV-----TLD--------  314 (535)
Q Consensus       251 ~lVV~AdG~~S~v~~~~~p~~~~~~~-~~~~~~~y~~~~~-~~~~l~~~-~~~~~~~~P~~~~~-----~~~--------  314 (535)
                      |+||+|||.+|.++++......+... ...+.+......+ .....+.+ ..++++++|...+.     ...        
T Consensus       171 dlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~  250 (415)
T PRK07364        171 KLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALL  250 (415)
T ss_pred             eEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHH
Confidence            99999999999999875332111000 0111111110000 00000000 01222333332110     000        


Q ss_pred             cc---chhc---chh-cc------------ccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427          315 NL---EIQR---VIY-GI------------FPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  374 (535)
Q Consensus       315 ~~---~~~r---~~~-g~------------~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~  374 (535)
                      +.   .+..   ..+ +.            +|... ...+.+ .+|++++|||||.++|++|||+|.+++||..|+++|.
T Consensus       251 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~  329 (415)
T PRK07364        251 ALPEAEFLAELQQRYGDQLGKLELLGDRFLFPVQL-MQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQ  329 (415)
T ss_pred             CCCHHHHHHHHHHHhhhhhcCceecCCCceecchh-hhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHH
Confidence            00   0000   000 00            11110 011222 5899999999999999999999999999999999998


Q ss_pred             HHHhC
Q 009427          375 EAVRG  379 (535)
Q Consensus       375 ~al~~  379 (535)
                      +.++.
T Consensus       330 ~~~~~  334 (415)
T PRK07364        330 TAHQR  334 (415)
T ss_pred             HHHhc
Confidence            87653

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.93  E-value=4.1e-24  Score=226.58  Aligned_cols=266  Identities=17%  Similarity=0.190  Sum_probs=159.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC-CCC-----CcccccccHHHHHHHHHcCCCChHhHHHHHh------
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT-LKG-----REQEWNISRKELLELVESGILVEDDIDEATA------  176 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~-~~~-----~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~------  176 (535)
                      .+||+||| ||+|+++|+.|+++|++|+|+|+.. ...     ..+...++...++.|.++|+++  ++.+...      
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~--~l~~~~~~~~~~~   81 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQ--GIEARRAAPYIAM   81 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchh--hhhhhhCCcccEE
Confidence            58999999 9999999999999999999999962 111     1223346777888888889853  2221100      


Q ss_pred             hhcCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427          177 TKFNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (535)
Q Consensus       177 ~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l  252 (535)
                      ..+...   .+.+...  ........+.+++..+.+.|.+++.+. |++++.+++|++++.+++++.|++++|++++||+
T Consensus        82 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~l  159 (405)
T PRK08850         82 EVWEQDSFARIEFDAE--SMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKL  159 (405)
T ss_pred             EEEeCCCCceEEEecc--ccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCE
Confidence            111111   1111110  000011234466778888999988775 6899999999999888888889888888999999


Q ss_pred             EEEccCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCCChHHHH--HHHhhhccCccC-C----------------C
Q 009427          253 IIDAMGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSPKLEELL--ERYWDLMPEYQG-V----------------T  312 (535)
Q Consensus       253 VV~AdG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~~l~~~~--~~~~~~~P~~~~-~----------------~  312 (535)
                      ||+|||.+|.++++........ .....+...+....+........+  ++.+.++|...+ .                .
T Consensus       160 vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~  239 (405)
T PRK08850        160 VVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAEALLA  239 (405)
T ss_pred             EEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHHHHHc
Confidence            9999999999999853221110 001111111111101000000011  112223332210 0                0


Q ss_pred             CCccchhc---chh----c---------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427          313 LDNLEIQR---VIY----G---------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE  375 (535)
Q Consensus       313 ~~~~~~~r---~~~----g---------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~  375 (535)
                      .+...+.+   ..+    +         .+|.... ..+.+ .+|++++|||||.++|+.|||+|.+++|+..|+++|..
T Consensus       240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~-~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~  318 (405)
T PRK08850        240 MSDEQFNKALTAEFDNRLGLCEVVGERQAFPLKMR-YARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILA  318 (405)
T ss_pred             CCHHHHHHHHHHHHhhhhCcEEEcccccEEeccee-eccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHH
Confidence            00000110   000    0         1121110 11222 59999999999999999999999999999999999988


Q ss_pred             HHhCC
Q 009427          376 AVRGD  380 (535)
Q Consensus       376 al~~~  380 (535)
                      .+..+
T Consensus       319 ~~~~~  323 (405)
T PRK08850        319 LWQQG  323 (405)
T ss_pred             HHhcC
Confidence            77543

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.92  E-value=4.3e-24  Score=224.25  Aligned_cols=263  Identities=19%  Similarity=0.214  Sum_probs=161.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC------cccccccHHHHHHHHHcCCCChHhHHHHHh------hh
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEATA------TK  178 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~------~~~~~is~~~l~~L~~lGl~~~~~~~~~~~------~~  178 (535)
                      ||+||| ||+|+++|+.|+++|++|+|+||.+..+.      .+...++...++.|.++|+++  ++.....      ..
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~--~~~~~~~~~~~~~~~   78 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWD--KIEPDRAQPIRDIHV   78 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchh--hhhhhcCCCceEEEE
Confidence            799999 99999999999999999999999965321      123446777778888889743  2222111      01


Q ss_pred             cCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEE
Q 009427          179 FNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (535)
Q Consensus       179 ~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV  254 (535)
                      +.+.   .+.+...  ........+.+++..+.+.|.+.+.+.| ++++.+++|++++.+++++.+++++|+++.+|+||
T Consensus        79 ~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi  156 (385)
T TIGR01988        79 SDGGSFGALHFDAD--EIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLV  156 (385)
T ss_pred             EeCCCCceEEechh--hcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEE
Confidence            1111   0111100  0001112355788999999999998887 89999999999988888888888888889999999


Q ss_pred             EccCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCC-ChHHH-HHHHhhhccCccCC-----CCC-----------c
Q 009427          255 DAMGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSP-KLEEL-LERYWDLMPEYQGV-----TLD-----------N  315 (535)
Q Consensus       255 ~AdG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~-~l~~~-~~~~~~~~P~~~~~-----~~~-----------~  315 (535)
                      +|||.+|.++++.......+ .....+...+....+... ....+ .+++++++|...+.     ...           .
T Consensus       157 ~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  236 (385)
T TIGR01988       157 GADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALSD  236 (385)
T ss_pred             EeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCH
Confidence            99999999998753221111 111122222211111000 00000 01223333332210     000           0


Q ss_pred             cchhcc---hh-------------ccccCCCCCCCCc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427          316 LEIQRV---IY-------------GIFPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       316 ~~~~r~---~~-------------g~~P~~~~~pl~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~  378 (535)
                      ..+...   .+             ...|... .+.+. ..+|++++|||||.++|++|||++.+++|+..|++.|.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~  315 (385)
T TIGR01988       237 EEFLAELQRAFGSRLGAITLVGERHAFPLSL-THAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARR  315 (385)
T ss_pred             HHHHHHHHHHHhhhcCceEeccCcceeechh-hhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHh
Confidence            000000   00             0111111 01122 259999999999999999999999999999999999988775


Q ss_pred             C
Q 009427          379 G  379 (535)
Q Consensus       379 ~  379 (535)
                      .
T Consensus       316 ~  316 (385)
T TIGR01988       316 R  316 (385)
T ss_pred             c
Confidence            3

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.92  E-value=2.8e-24  Score=230.08  Aligned_cols=152  Identities=20%  Similarity=0.272  Sum_probs=108.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHH----CCCcEEEEcccCCCC-------------CcccccccHHHHHHHHHcCCCChHhHH
Q 009427          111 FDVIVCG-GTLGIFIATALSF----KGLRVAIVERNTLKG-------------REQEWNISRKELLELVESGILVEDDID  172 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr----~G~~V~liEr~~~~~-------------~~~~~~is~~~l~~L~~lGl~~~~~~~  172 (535)
                      |||+||| ||+|+++|+.|++    +|++|+|||+.+.+.             ..+...++...++.|.++|+++  ++.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~--~l~   78 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWD--HIQ   78 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchh--hhh
Confidence            6999999 9999999999999    899999999953211             1233446788888888889853  222


Q ss_pred             HHHh------hhcCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCC---CEEEeCceEEEEEEe------
Q 009427          173 EATA------TKFNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTY------  234 (535)
Q Consensus       173 ~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G---~~i~~~~~V~~i~~~------  234 (535)
                      ..-.      ..+...   .+.|....   ......+.+++..+.+.|.+++.+.+   ++++.+++|++++.+      
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~  155 (437)
T TIGR01989        79 SDRIQPFGRMQVWDGCSLALIRFDRDN---GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPND  155 (437)
T ss_pred             hhcCCceeeEEEecCCCCceEEeecCC---CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccC
Confidence            1100      011111   11111100   01122456788899999999988765   799999999999752      


Q ss_pred             -CCeEEEEEcCCeEEEcCeEEEccCCChHHHHHh
Q 009427          235 -ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQA  267 (535)
Q Consensus       235 -~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~  267 (535)
                       +++++|++.+|++++|++||+|||++|.+|++.
T Consensus       156 ~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~  189 (437)
T TIGR01989       156 NSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAA  189 (437)
T ss_pred             CCCceEEEEcCCCEEEeeEEEEecCCCChhHHHc
Confidence             457888888899999999999999999999885

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK10015 oxidoreductase; Provisional

Probab=99.92  E-value=9.9e-24  Score=224.89  Aligned_cols=286  Identities=19%  Similarity=0.223  Sum_probs=168.0

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccc-c-cccHHHHHHHHHcCCCChHhHHHHHhh---hc-CC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQE-W-NISRKELLELVESGILVEDDIDEATAT---KF-NP  181 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~-~-~is~~~l~~L~~lGl~~~~~~~~~~~~---~~-~~  181 (535)
                      ++||||||| ||+|+++|+.||++|++|+||||...++.... . .++...++.+.. ++.....++..+..   .+ ..
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~~~~   82 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISFLTE   82 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEEEeC
Confidence            369999999 99999999999999999999999876543321 1 133333444311 22111111111110   00 00


Q ss_pred             C---cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          182 N---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       182 ~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                      .   .+.+... ....+....+.+++..|.++|.+++++.|++++.+++|+++..++++++....++.+++|++||+|||
T Consensus        83 ~~~~~~~~~~~-~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG  161 (429)
T PRK10015         83 ESAVTLDFHRE-QPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADG  161 (429)
T ss_pred             CCceEeecccC-CCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccC
Confidence            0   1111100 00001112466889999999999999999999999999999877666653333556899999999999


Q ss_pred             CChHHHHHhCCCCCCCCCceeEEEEEecCCCCCC-ChHHHH-----HHHhhhccCc---------------cCC------
Q 009427          259 NFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSP-KLEELL-----ERYWDLMPEY---------------QGV------  311 (535)
Q Consensus       259 ~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~-~l~~~~-----~~~~~~~P~~---------------~~~------  311 (535)
                      .+|.++++. ..... .+...+...+.......+ .++..+     ++++|++|..               ..+      
T Consensus       162 ~~s~v~~~l-g~~~~-~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~~d~v~vGv~~  239 (429)
T PRK10015        162 VNSMLGRSL-GMVPA-SDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVC  239 (429)
T ss_pred             cchhhhccc-CCCcC-CCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEcCCcEEEEEEE
Confidence            999988763 21111 112233333332211111 111222     2344554421               100      


Q ss_pred             CCC--------------ccchh---cc-h---------hccccCCCCCCCC-ccCCCeeEeecCCCcccc--cccccchH
Q 009427          312 TLD--------------NLEIQ---RV-I---------YGIFPTYRDSPLP-AAFNRILQFGDASGIQSP--VSFGGFGS  361 (535)
Q Consensus       312 ~~~--------------~~~~~---r~-~---------~g~~P~~~~~pl~-~~~~rvlliGDAA~~~~P--~~G~Gi~~  361 (535)
                      .+.              .+...   ++ +         ...+|.......+ ...+|++++||||++++|  ++|+||+.
T Consensus       240 ~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~  319 (429)
T PRK10015        240 GLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDL  319 (429)
T ss_pred             ehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccCccccchhH
Confidence            000              00000   00 0         0124443211222 347999999999999995  59999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCChhchhhhCCCCchhhhhH
Q 009427          362 LTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASW  401 (535)
Q Consensus       362 al~da~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~~~~  401 (535)
                      ||.++..+|+.+.++++.++.+...|+   .|++.+...+
T Consensus       320 A~~SG~~AAe~i~~a~~~~d~s~~~l~---~Y~~~~~~~~  356 (429)
T PRK10015        320 AIASAQAAATTVIAAKERADFSASSLA---QYKRELEQSC  356 (429)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccccHH---HHHHHHHHCH
Confidence            999999999999999987777766654   4555555443

>PRK06834 hypothetical protein; Provisional

Probab=99.92  E-value=3.5e-23  Score=223.98  Aligned_cols=264  Identities=19%  Similarity=0.235  Sum_probs=158.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC--CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcC-C--Cc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG--REQEWNISRKELLELVESGILVEDDIDEATATKFN-P--NR  183 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~--~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~-~--~~  183 (535)
                      ++||+||| ||+|+++|+.|+++|++|+||||.+...  ..+...++...++.|.++|+++  ++..... ... .  ..
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~--~l~~~~~-~~~~~~~~~   79 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIAD--RFLAQGQ-VAQVTGFAA   79 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHH--HHHhcCC-ccccceeee
Confidence            58999999 9999999999999999999999986422  2234457778888888889742  2221110 000 0  00


Q ss_pred             ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ..+... .........+.+....+.+.|.+.+.+.|++++.+++|++++.+++++.+++.+|.+++|++||+|||.+|.+
T Consensus        80 ~~~~~~-~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v  158 (488)
T PRK06834         80 TRLDIS-DFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV  158 (488)
T ss_pred             Eecccc-cCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence            111100 0000111234466778889999999888999999999999998888888888778789999999999999998


Q ss_pred             HHHh---CCCCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCc-------------cCC--CCCccchhc---ch
Q 009427          264 VKQA---FPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEY-------------QGV--TLDNLEIQR---VI  322 (535)
Q Consensus       264 ~~~~---~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~-------------~~~--~~~~~~~~r---~~  322 (535)
                      +++.   +++..  .....+.....-..+.......-..+.+.+.|..             ...  ..+.-.+.+   ..
T Consensus       159 R~~lgi~~~g~~--~~~~~~~~dv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  236 (488)
T PRK06834        159 RKAAGIDFPGWD--PTTSYLIAEVEMTEEPEWGVHRDALGIHAFGRLEDEGPVRVMVTEKQVGATGEPTLDDLREALIAV  236 (488)
T ss_pred             HhhcCCCCCCCC--cceEEEEEEEEecCCCCcceeeCCCceEEEeccCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHh
Confidence            8774   22211  1111111111100000000000000001111110             000  000000011   11


Q ss_pred             hcc-----ccCCCC-CC-----CCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhC
Q 009427          323 YGI-----FPTYRD-SP-----LPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG  379 (535)
Q Consensus       323 ~g~-----~P~~~~-~p-----l~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~  379 (535)
                      ++.     .+.+.. .+     .+.+ .+||+|+|||||.++|+.|||||++++||.+|+++|+..++.
T Consensus       237 ~g~~~~~~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g  305 (488)
T PRK06834        237 YGTDYGIHSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKG  305 (488)
T ss_pred             hCCCCccccceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcC
Confidence            110     011100 01     1122 599999999999999999999999999999999999988863

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.92  E-value=2.2e-23  Score=219.86  Aligned_cols=257  Identities=20%  Similarity=0.227  Sum_probs=155.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh--hhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA--TKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~--~~~~~~~~~~~  187 (535)
                      |||+||| ||+|+++|+.|++.|++|+|+|+.........+.++...++.+   |+.+ +.+...+.  ..+.+....+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l---~i~~-~~~~~~~~~~~~~~~~~~~~~   76 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEF---DIPD-SLIDRRVTQMRMISPSRVPIK   76 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhc---CCch-HHHhhhcceeEEEcCCCceee
Confidence            7999999 9999999999999999999999982111222334565555544   7632 21221111  11222211000


Q ss_pred             ccCcceeeecccc--ccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC------C--eEEEcCeEEEcc
Q 009427          188 GKGEIWVEDILNL--GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE------G--KILSSHLIIDAM  257 (535)
Q Consensus       188 ~~~~~~~~~~~~~--~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~------G--~~i~a~lVV~Ad  257 (535)
                      ..    .+....+  .+++..|.+.|.+++.+.|++++.+ +|+++..+++++.+++.+      |  .+++|++||+||
T Consensus        77 ~~----~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~Ad  151 (388)
T TIGR02023        77 VT----IPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGAD  151 (388)
T ss_pred             ec----cCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECC
Confidence            00    0000112  3789999999999999999999765 699998877877776643      2  479999999999


Q ss_pred             CCChHHHHHhCCCCCCCCCceeEEEEEecCC---CCCCChHH-HH------HHHhhhccCccCCCC------Cccc---h
Q 009427          258 GNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQ---AGSPKLEE-LL------ERYWDLMPEYQGVTL------DNLE---I  318 (535)
Q Consensus       258 G~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~---~~~~~l~~-~~------~~~~~~~P~~~~~~~------~~~~---~  318 (535)
                      |.+|.++++.-..... .....+...+....   ...++..+ ++      +.|.|++|.......      ....   .
T Consensus       152 G~~S~v~r~lg~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~~~vg~~~~~~~~~~~~~  230 (388)
T TIGR02023       152 GANSPVAKELGLPKNL-PRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDHIAVGTGTGTHGFDAKQL  230 (388)
T ss_pred             CCCcHHHHHcCCCCCC-cEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCeeEEeEEECCCCCCHHHH
Confidence            9999999874211110 00011111111000   00111111 11      346788887642100      0000   0


Q ss_pred             hcch---------------hccccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCC
Q 009427          319 QRVI---------------YGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD  380 (535)
Q Consensus       319 ~r~~---------------~g~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~  380 (535)
                      ...+               .+.+|..   +.+.+ .+|+++||||||+++|++|+|++.||.++..+++.|++++..+
T Consensus       231 ~~~l~~~~~~~~~~~~~~~~~~ip~~---~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~  305 (388)
T TIGR02023       231 QANLRRRAGLDGGQTIRREAAPIPMK---PRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG  305 (388)
T ss_pred             HHHHHHhhCCCCceEeeeeeEecccc---ccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC
Confidence            0000               0122321   22222 5899999999999999999999999999999999999998754

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.92  E-value=7e-23  Score=224.83  Aligned_cols=267  Identities=17%  Similarity=0.183  Sum_probs=155.3

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC-CCcccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK-GREQEWNISRKELLELVESGILVEDDIDEATA-----TKFNP  181 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~-~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~  181 (535)
                      .++||+||| ||+|+++|+.|+++|++|+||||.... ...+...++...++.|.++|+.+  ++.....     ..++.
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~--~l~~~~~~~~~~~~~~~   86 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLAD--EVLPHTTPNHGMRFLDA   86 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChh--HHHhhcccCCceEEEcC
Confidence            369999999 999999999999999999999998532 22344567778888888889742  2221110     00111


Q ss_pred             -Ccc--cccccC-cceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc--CC--eEEEcCe
Q 009427          182 -NRC--GFEGKG-EIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHL  252 (535)
Q Consensus       182 -~~~--~~~~~~-~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~--~G--~~i~a~l  252 (535)
                       +..  .+.... ..+. ....+.+++..+.+.|.+.+.+. |++++.+++|++++.++++++++++  +|  .+++||+
T Consensus        87 ~g~~~~~~~~~~~~~~g-~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~  165 (538)
T PRK06183         87 KGRCLAEIARPSTGEFG-WPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARY  165 (538)
T ss_pred             CCCEEEEEcCCCCCCCC-CChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEE
Confidence             100  110000 0000 01123467778888999988775 8999999999999988889888875  45  4799999


Q ss_pred             EEEccCCChHHHHHhCCCCCCCCCceeEE-EEEecC-CCCC-CChHHHH--HHHhhhccCccC-----------CCCCcc
Q 009427          253 IIDAMGNFSPVVKQAFPAGSGPLDRTTYM-FTYIDP-QAGS-PKLEELL--ERYWDLMPEYQG-----------VTLDNL  316 (535)
Q Consensus       253 VV~AdG~~S~v~~~~~p~~~~~~~~~~~~-~~y~~~-~~~~-~~l~~~~--~~~~~~~P~~~~-----------~~~~~~  316 (535)
                      ||+|||.+|.+|+++-....+......+. +..... .+.. +.....+  ...+.++|...+           ...++.
T Consensus       166 vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~~  245 (538)
T PRK06183        166 VVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFMLLPGETEEQL  245 (538)
T ss_pred             EEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEeCCCCChhhc
Confidence            99999999999987521111100011111 111000 0000 0000000  000011111000           000000


Q ss_pred             ---chhcchh-cc--ccC---------CCC--CCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427          317 ---EIQRVIY-GI--FPT---------YRD--SPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       317 ---~~~r~~~-g~--~P~---------~~~--~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~  378 (535)
                         ...+..+ .+  .|.         +..  .....+ .+||+|+|||||.++|+.|||+|++++||..|+++|+..++
T Consensus       246 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~  325 (538)
T PRK06183        246 ASPENVWRLLAPWGPTPDDAELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLR  325 (538)
T ss_pred             CCHHHHHHHHHhhCCCCcceEEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHc
Confidence               0000000 00  000         000  001222 49999999999999999999999999999999999987664

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.92  E-value=1.7e-23  Score=221.26  Aligned_cols=264  Identities=19%  Similarity=0.220  Sum_probs=156.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh--hhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA--TKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~--~~~~~~~~~~~  187 (535)
                      +||+||| ||+|+++|+.|+++|++|+||||...........++...++.+   |+.. +.+...+.  ..+.|....+.
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~---g~~~-~~~~~~i~~~~~~~p~~~~~~   76 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEF---ALPR-DIIDRRVTKMKMISPSNIAVD   76 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhc---cCch-hHHHhhhceeEEecCCceEEE
Confidence            5899999 9999999999999999999999975322222223554444444   7632 22221111  12233211111


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEE--cC-----C--eEEEcCeEEE
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLL--AE-----G--KILSSHLIID  255 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~---~~gv~v~~--~~-----G--~~i~a~lVV~  255 (535)
                      .... ......-..+++..|.+.|.+++.++|++++.++ ++++...   ++.+.|++  .+     |  .+++|++||+
T Consensus        77 ~~~~-~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIg  154 (398)
T TIGR02028        77 IGRT-LKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIG  154 (398)
T ss_pred             eccC-CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEE
Confidence            0000 0000001247899999999999999999998774 7776432   23444443  22     3  4799999999


Q ss_pred             ccCCChHHHHHhCCCCCCCCCceeEEEEEec---CCCC----CCChHH-HH------HHHhhhccCccCC------CC--
Q 009427          256 AMGNFSPVVKQAFPAGSGPLDRTTYMFTYID---PQAG----SPKLEE-LL------ERYWDLMPEYQGV------TL--  313 (535)
Q Consensus       256 AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~---~~~~----~~~l~~-~~------~~~~~~~P~~~~~------~~--  313 (535)
                      |||.+|.++++.-.. .     ..+...|..   ....    .+...+ ++      +.|.|+||.....      ..  
T Consensus       155 ADG~~S~v~~~~g~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~~~VG~g~~~~~  228 (398)
T TIGR02028       155 ADGANSRVAKEIDAG-D-----YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVAAK  228 (398)
T ss_pred             CCCcchHHHHHhCCC-C-----cceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCeEEEEEEeCCCC
Confidence            999999999875221 1     111222211   0000    011111 11      3478999976421      00  


Q ss_pred             Cccc-hhcc--------h---------hccccCCCCCCCC-ccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427          314 DNLE-IQRV--------I---------YGIFPTYRDSPLP-AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  374 (535)
Q Consensus       314 ~~~~-~~r~--------~---------~g~~P~~~~~pl~-~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~  374 (535)
                      ..+. +.+.        .         .+.+|..   +.+ ...+|+++||||||+++|++|+||+.||+++..+|+.+.
T Consensus       229 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ip~~---~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~  305 (398)
T TIGR02028       229 PEIKRLQSGIRARAAGKVAGGRIIRVEAHPIPEH---PRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIV  305 (398)
T ss_pred             ccHHHHHHhhhhhhhhccCCCcEEEEEEEecccc---ccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHH
Confidence            0000 0000        0         0113321   122 236999999999999999999999999999999999999


Q ss_pred             HHHhCCC--CChhchhh
Q 009427          375 EAVRGDF--VDSYSLSL  389 (535)
Q Consensus       375 ~al~~~~--~~~~~l~~  389 (535)
                      ++++.+.  .+...|+.
T Consensus       306 ~~~~~~~~~~~~~~l~~  322 (398)
T TIGR02028       306 EESRLGGAVTEEGDLAG  322 (398)
T ss_pred             HHHhcCCCcCCHHHHHH
Confidence            9987654  34444443

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.92  E-value=1.8e-23  Score=220.22  Aligned_cols=154  Identities=19%  Similarity=0.193  Sum_probs=108.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-------CcccccccHHHHHHHHHcCCCChHhHHHHHh-----
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-------REQEWNISRKELLELVESGILVEDDIDEATA-----  176 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-------~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----  176 (535)
                      .+||+||| ||+|+++|+.|+++|++|+|+|+.+...       ..+...+++..++.|.++|+++  .+.....     
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~--~~~~~~~~~~~~   80 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWS--SIVAMRVCPYKR   80 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCch--hhhHhhCCccce
Confidence            48999999 9999999999999999999999874211       1122346788888888889854  2211100     


Q ss_pred             -hhcCCC--cccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427          177 -TKFNPN--RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (535)
Q Consensus       177 -~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l  252 (535)
                       ..+...  ...+..  ........++.+.+..|...|.+++.+. +++++.+++|++++.+++++++++++|.+++||+
T Consensus        81 ~~~~~~~~~~~~~~~--~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l  158 (384)
T PRK08849         81 LETWEHPECRTRFHS--DELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW  158 (384)
T ss_pred             EEEEeCCCceEEecc--cccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence             011100  111110  0000111234455667778888887664 6899999999999988889999998898999999


Q ss_pred             EEEccCCChHHHHHh
Q 009427          253 IIDAMGNFSPVVKQA  267 (535)
Q Consensus       253 VV~AdG~~S~v~~~~  267 (535)
                      ||+|||.+|.+|++.
T Consensus       159 vIgADG~~S~vR~~~  173 (384)
T PRK08849        159 VIGADGANSQVRQLA  173 (384)
T ss_pred             EEEecCCCchhHHhc
Confidence            999999999999874

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.92  E-value=8.2e-23  Score=215.73  Aligned_cols=264  Identities=16%  Similarity=0.189  Sum_probs=150.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC---CCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~---~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      ++||+||| ||+|+++|+.|++.|++|+|+||.+..   ...+...+....++.|.++|+++  ++... ....  ....
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~--~l~~~-~~~~--~~~~   76 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGE--RMDRE-GLVH--DGIE   76 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChH--HHHhc-CCcc--CcEE
Confidence            47999999 999999999999999999999998631   11222236677788888889842  22221 1000  1111


Q ss_pred             ccccCcceeee-------ccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeEEEEE-cCCe--EEEcCeEE
Q 009427          186 FEGKGEIWVED-------ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLL-AEGK--ILSSHLII  254 (535)
Q Consensus       186 ~~~~~~~~~~~-------~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~-~~~gv~v~~-~~G~--~i~a~lVV  254 (535)
                      +...+.....+       .....+++..+.+.|.+.+.+.|++++++++|++++. +++++.|++ .+|+  +++||+||
T Consensus        77 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vV  156 (392)
T PRK08243         77 LRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIA  156 (392)
T ss_pred             EEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEE
Confidence            11111100000       0011234667888888888888999999999999976 556666766 3563  69999999


Q ss_pred             EccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCC-CCChHH-HH----HHHhhhccCccCC-----------CCCcc-
Q 009427          255 DAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAG-SPKLEE-LL----ERYWDLMPEYQGV-----------TLDNL-  316 (535)
Q Consensus       255 ~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~-~~~l~~-~~----~~~~~~~P~~~~~-----------~~~~~-  316 (535)
                      +|||.+|.+|++..+... ......+.+.|...... .+...+ .+    ..+..+.|...+.           ..+.. 
T Consensus       157 gADG~~S~vR~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (392)
T PRK08243        157 GCDGFHGVSRASIPAGAL-RTFERVYPFGWLGILAEAPPVSDELIYANHERGFALCSMRSPTRSRYYLQCPLDDKVEDWS  235 (392)
T ss_pred             ECCCCCCchhhhcCcchh-hceecccCceEEEEeCCCCCCCCceEEeeCCCceEEEecCCCCcEEEEEEecCCCCcccCC
Confidence            999999999988533210 00011111122111000 000000 00    0111111110000           00000 


Q ss_pred             --chh---cchhcc------c--cC--CCCCCC-----Ccc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427          317 --EIQ---RVIYGI------F--PT--YRDSPL-----PAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE  375 (535)
Q Consensus       317 --~~~---r~~~g~------~--P~--~~~~pl-----~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~  375 (535)
                        ...   +..++.      .  +.  ....++     +.+ .+|++|+|||||.++|++|||+|++++|+..|++.|.+
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~  315 (392)
T PRK08243        236 DERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVE  315 (392)
T ss_pred             hhHHHHHHHHhcCcccccccccCccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHH
Confidence              000   000000      0  00  000011     112 48999999999999999999999999999999999988


Q ss_pred             HHhC
Q 009427          376 AVRG  379 (535)
Q Consensus       376 al~~  379 (535)
                      .++.
T Consensus       316 ~~~~  319 (392)
T PRK08243        316 FYRE  319 (392)
T ss_pred             Hhcc
Confidence            7754

>PRK06185 hypothetical protein; Provisional

Probab=99.92  E-value=3.4e-23  Score=219.58  Aligned_cols=276  Identities=15%  Similarity=0.097  Sum_probs=158.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh------hhcC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA------TKFN  180 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~------~~~~  180 (535)
                      .++||+||| |++|+++|+.|+++|++|+|||+.+.... .+...++...++.|.++|+++  ++.....      ..+.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~--~~~~~~~~~~~~~~~~~   82 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLE--RFLELPHQKVRTLRFEI   82 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChh--HHhhcccceeeeEEEEE
Confidence            369999999 99999999999999999999999853221 123345666777777779853  2222100      0011


Q ss_pred             CC-cccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE---EEEcCC-eEEEcCeEE
Q 009427          181 PN-RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV---LLLAEG-KILSSHLII  254 (535)
Q Consensus       181 ~~-~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~---v~~~~G-~~i~a~lVV  254 (535)
                      .+ ......-..........+.+.+..+.+.|.+++.+. |++++.+++|+++..+++++.   +...+| .+++|++||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI  162 (407)
T PRK06185         83 GGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVV  162 (407)
T ss_pred             CCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEE
Confidence            11 010000000000011223467788889999888765 789999999999988777653   333456 479999999


Q ss_pred             EccCCChHHHHHhCCCCCCCCCceeEEEEEecCC-CCCC-ChHHHH--HHHhhhccCccCC------C------CCcc--
Q 009427          255 DAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQ-AGSP-KLEELL--ERYWDLMPEYQGV------T------LDNL--  316 (535)
Q Consensus       255 ~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~-~~~~-~l~~~~--~~~~~~~P~~~~~------~------~~~~--  316 (535)
                      +|||.+|.++++....... .+.....+.+.... ...+ .....+  ++++.++|.....      .      ..+.  
T Consensus       163 ~AdG~~S~vr~~~gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~llP~~~~~~i~~~~~~~~~~~~~~~~~  241 (407)
T PRK06185        163 GADGRHSRVRALAGLEVRE-FGAPMDVLWFRLPREPDDPESLMGRFGPGQGLIMIDRGDYWQCGYVIPKGGYAALRAAGL  241 (407)
T ss_pred             ECCCCchHHHHHcCCCccc-cCCCceeEEEecCCCCCCCcccceEecCCcEEEEEcCCCeEEEEEEecCCCchhhhhhhH
Confidence            9999999988874222111 11111111111110 0110 000001  2233344442100      0      0000  


Q ss_pred             -chhcchhccc-------------------cCCCCCCCC-ccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427          317 -EIQRVIYGIF-------------------PTYRDSPLP-AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE  375 (535)
Q Consensus       317 -~~~r~~~g~~-------------------P~~~~~pl~-~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~  375 (535)
                       .+.+.+...+                   |.... ..+ ...+|++++|||||.+||++|||+|.+++|+..|++.|.+
T Consensus       242 ~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~  320 (407)
T PRK06185        242 EAFRERVAELAPELADRVAELKSWDDVKLLDVRVD-RLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAE  320 (407)
T ss_pred             HHHHHHHHHhCccHHHHHhhcCCccccEEEEEecc-ccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHH
Confidence             0000000111                   11110 111 2259999999999999999999999999999999999999


Q ss_pred             HHhCCCCChhchh
Q 009427          376 AVRGDFVDSYSLS  388 (535)
Q Consensus       376 al~~~~~~~~~l~  388 (535)
                      +++.++.....|.
T Consensus       321 ~~~~~~~~~~~L~  333 (407)
T PRK06185        321 PLRRGRVSDRDLA  333 (407)
T ss_pred             HhccCCccHHHHH
Confidence            8866543333333

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.92  E-value=3.5e-23  Score=217.97  Aligned_cols=261  Identities=21%  Similarity=0.249  Sum_probs=156.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-c-----ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCC-
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-E-----QEWNISRKELLELVESGILVEDDIDEATATKFNP-  181 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~-----~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~-  181 (535)
                      ++||+||| ||+|+++|+.|++.|++|+|+||...... .     +...++...++.|.++|+++.  ++.   ..+.+ 
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~--~~~---~~~~~~   79 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQA--LDA---ARLAPV   79 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhh--hhh---hcCCcc
Confidence            58999999 99999999999999999999999864321 1     112356677777777787431  211   11111 


Q ss_pred             Cccccccc--Cccee------eeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427          182 NRCGFEGK--GEIWV------EDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (535)
Q Consensus       182 ~~~~~~~~--~~~~~------~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l  252 (535)
                      ..+.+...  .....      .....+.+++..+.+.|.+++.+.| ++++ +++|+++..+++++.|++++|.+++||+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~  158 (388)
T PRK07608         80 YDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADL  158 (388)
T ss_pred             eEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeE
Confidence            01111100  00000      0112345788999999999998887 7888 8999999888888888888888899999


Q ss_pred             EEEccCCChHHHHHhCCCCCC-CCCceeEEEEEecCCCCCCChHHHH--HHHhhhccCccCC-----C-----------C
Q 009427          253 IIDAMGNFSPVVKQAFPAGSG-PLDRTTYMFTYIDPQAGSPKLEELL--ERYWDLMPEYQGV-----T-----------L  313 (535)
Q Consensus       253 VV~AdG~~S~v~~~~~p~~~~-~~~~~~~~~~y~~~~~~~~~l~~~~--~~~~~~~P~~~~~-----~-----------~  313 (535)
                      ||+|||.+|.+++........ +.....+.+.+............++  +++++++|...+.     .           .
T Consensus       159 vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  238 (388)
T PRK07608        159 VVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSMVWSARTAHADELLAL  238 (388)
T ss_pred             EEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHCC
Confidence            999999999988764322111 1111222222221111100000000  1122223322110     0           0


Q ss_pred             Cccchhcchh-------c---------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHH
Q 009427          314 DNLEIQRVIY-------G---------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA  376 (535)
Q Consensus       314 ~~~~~~r~~~-------g---------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~a  376 (535)
                      ..-.+...+.       +         .+|... ...+.+ .+|+++||||||.++|++|||+|.+++|+..|++.|...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~  317 (388)
T PRK07608        239 SPEALAARVERASGGRLGRLECVTPAAGFPLRL-QRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGR  317 (388)
T ss_pred             CHHHHHHHHHHHHHHhcCCceecCCcceeecch-hhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHh
Confidence            0000000000       0         011110 111222 599999999999999999999999999999999999765


Q ss_pred             H
Q 009427          377 V  377 (535)
Q Consensus       377 l  377 (535)
                      .
T Consensus       318 ~  318 (388)
T PRK07608        318 E  318 (388)
T ss_pred             h
Confidence            4

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.91  E-value=3.7e-24  Score=221.01  Aligned_cols=262  Identities=22%  Similarity=0.266  Sum_probs=151.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHh-hhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA-TKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~-~~~~~~~~~~  186 (535)
                      ++||+||| ||+|+++|+.|+++|++|+||||.+..... +...+....++.|.++|+.  +++..... ...  ....+
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~--~~~~~~~~~~~~--~~~~~   76 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLL--DEILARGSPHEV--MRIFF   76 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEH--HHHHHHSEEECE--EEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccch--hhhhhhcccccc--eeeEe
Confidence            38999999 999999999999999999999998643322 2234677778888888872  22222210 000  00000


Q ss_pred             ccc----------C---cce---eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CC--
Q 009427          187 EGK----------G---EIW---VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--  245 (535)
Q Consensus       187 ~~~----------~---~~~---~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G--  245 (535)
                      ...          .   ..+   ........+++..|.+.|.+.+.+.|++++.+++|++++.+++++.+.+.   +|  
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~  156 (356)
T PF01494_consen   77 YDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEE  156 (356)
T ss_dssp             EEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEE
T ss_pred             ecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCce
Confidence            000          0   000   00111234678899999999999999999999999999988888776553   33  


Q ss_pred             eEEEcCeEEEccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCC-C-Ch-H-HHH-----HHHhhhccCccC------
Q 009427          246 KILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGS-P-KL-E-ELL-----ERYWDLMPEYQG------  310 (535)
Q Consensus       246 ~~i~a~lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~-~-~l-~-~~~-----~~~~~~~P~~~~------  310 (535)
                      ++++||+||+|||.+|.++++..+....  ....+.+.+....... . .+ . ..+     ...++++|....      
T Consensus       157 ~~i~adlvVgADG~~S~vR~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  234 (356)
T PF01494_consen  157 ETIEADLVVGADGAHSKVRKQLGIDRPG--PDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFV  234 (356)
T ss_dssp             EEEEESEEEE-SGTT-HHHHHTTGGEEE--EEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEE
T ss_pred             eEEEEeeeecccCcccchhhhccccccC--ccccccccccccccccccccccccccccccccccceeEeeccCCccceEE
Confidence            3799999999999999999986433111  1111112211110000 0 00 0 000     111123332210      


Q ss_pred             --------C--CCCccchhc------chhc------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchH
Q 009427          311 --------V--TLDNLEIQR------VIYG------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGS  361 (535)
Q Consensus       311 --------~--~~~~~~~~r------~~~g------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~  361 (535)
                              .  .........      ..++            .+|... .....+ .+|++|||||||.++|++|||+|.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~  313 (356)
T PF01494_consen  235 WFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQ-RVADRWVKGRVLLIGDAAHAMDPFSGQGINM  313 (356)
T ss_dssp             EEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEE-EEESSSEETTEEE-GGGTEEE-CCTSHHHHH
T ss_pred             Eeeecccccccccccccccccccccccccccccccccccccccccccc-ccccccccceeEEeccceeeecccccCCCCc
Confidence                    0  000000000      0000            011110 011122 489999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 009427          362 LTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       362 al~da~~La~~l~~al~  378 (535)
                      ||+||..|++.|...++
T Consensus       314 Ai~da~~La~~L~~~~~  330 (356)
T PF01494_consen  314 AIEDAAALAELLAAALK  330 (356)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHHhc
Confidence            99999999999998875

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK09126 hypothetical protein; Provisional

Probab=99.91  E-value=2e-23  Score=220.20  Aligned_cols=266  Identities=21%  Similarity=0.233  Sum_probs=156.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC------cccccccHHHHHHHHHcCCCChHhHHHH-Hh-----
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISRKELLELVESGILVEDDIDEA-TA-----  176 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~------~~~~~is~~~l~~L~~lGl~~~~~~~~~-~~-----  176 (535)
                      ++||+||| ||+|+++|+.|+++|++|+|+||......      .+...++...++.|.++|+++  .+... ..     
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~--~~~~~~~~~~~~~   80 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWD--RIPEDEISPLRDA   80 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChh--hhccccCCccceE
Confidence            58999999 99999999999999999999999864320      111235566677787889743  11110 00     


Q ss_pred             hhcCCC---cccccccCcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427          177 TKFNPN---RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (535)
Q Consensus       177 ~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l  252 (535)
                      ..+...   .+.+..  .........+.+++..+.+.|.+.+.+ .|++++++++|++++.+++++.|++++|++++||+
T Consensus        81 ~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~  158 (392)
T PRK09126         81 KVLNGRSPFALTFDA--RGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARL  158 (392)
T ss_pred             EEEcCCCCceeEeeh--hhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCE
Confidence            001110   111110  000011123446677788888888754 58999999999999887788888888888999999


Q ss_pred             EEEccCCChHHHHHhCCCCCCC-CCceeEEEEEecCCCCCCChHHHH--HHHhhhccCccCC-------CCC---c---c
Q 009427          253 IIDAMGNFSPVVKQAFPAGSGP-LDRTTYMFTYIDPQAGSPKLEELL--ERYWDLMPEYQGV-------TLD---N---L  316 (535)
Q Consensus       253 VV~AdG~~S~v~~~~~p~~~~~-~~~~~~~~~y~~~~~~~~~l~~~~--~~~~~~~P~~~~~-------~~~---~---~  316 (535)
                      ||+|||.+|.++++........ .....+...+....+.......++  +.+++++|...+.       ..+   .   .
T Consensus       159 vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~  238 (392)
T PRK09126        159 LVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALLAL  238 (392)
T ss_pred             EEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHcC
Confidence            9999999999988752221110 011111111111101000000011  1123334433211       000   0   0


Q ss_pred             ---chhc---chhc-c---cc---CCCCCCC-----Cc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHH
Q 009427          317 ---EIQR---VIYG-I---FP---TYRDSPL-----PA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV  377 (535)
Q Consensus       317 ---~~~r---~~~g-~---~P---~~~~~pl-----~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al  377 (535)
                         .+.+   ..+. .   +.   .....++     +. ..+|++++|||||.++|++|||+|.+++|+..|++.|..++
T Consensus       239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~  318 (392)
T PRK09126        239 DPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAA  318 (392)
T ss_pred             CHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHH
Confidence               0000   0010 0   00   0000111     12 25999999999999999999999999999999999999887


Q ss_pred             hC
Q 009427          378 RG  379 (535)
Q Consensus       378 ~~  379 (535)
                      +.
T Consensus       319 ~~  320 (392)
T PRK09126        319 RR  320 (392)
T ss_pred             hc
Confidence            53

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.91  E-value=5.2e-23  Score=216.15  Aligned_cols=260  Identities=20%  Similarity=0.218  Sum_probs=156.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCC-CcEEEEcccCCCCCc-----ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcc
Q 009427          112 DVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGRE-----QEWNISRKELLELVESGILVEDDIDEATATKFNPNRC  184 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~~~~~~-----~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~  184 (535)
                      ||+||| ||+|+++|+.|+++| ++|+|+||.+.....     +...++...++.|.++|+.+  .+... .  +.....
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~--~~~~~-~--~~~~~~   75 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWP--KLAPF-A--TPILDI   75 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChh--hhHhh-c--CccceE
Confidence            899999 999999999999999 999999998643221     22346667777888889843  22211 0  000011


Q ss_pred             ccccc---Cc------ceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEE
Q 009427          185 GFEGK---GE------IWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLII  254 (535)
Q Consensus       185 ~~~~~---~~------~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV  254 (535)
                      .+...   +.      .+......+.+++..|.+.|.+.+.+. |++++.+++|++++.+++++++++++|.+++||+||
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV  155 (382)
T TIGR01984        76 HVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLI  155 (382)
T ss_pred             EEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEE
Confidence            11000   00      000111235688999999999999884 899999999999988888888888888889999999


Q ss_pred             EccCCChHHHHHhCCCCCCCCC-ceeEEEEEecCCCCCC-ChHHHH-HHHhhhccCccC-C----------------CCC
Q 009427          255 DAMGNFSPVVKQAFPAGSGPLD-RTTYMFTYIDPQAGSP-KLEELL-ERYWDLMPEYQG-V----------------TLD  314 (535)
Q Consensus       255 ~AdG~~S~v~~~~~p~~~~~~~-~~~~~~~y~~~~~~~~-~l~~~~-~~~~~~~P~~~~-~----------------~~~  314 (535)
                      +|||.+|.++++.......... ...+.+.+....+... ....+. ++.+.++|...+ .                ..+
T Consensus       156 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  235 (382)
T TIGR01984       156 AADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLP  235 (382)
T ss_pred             EecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCC
Confidence            9999999988875322111100 1111111111001000 000000 111222232111 0                000


Q ss_pred             ccchhc---chhc-------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHH
Q 009427          315 NLEIQR---VIYG-------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV  377 (535)
Q Consensus       315 ~~~~~r---~~~g-------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al  377 (535)
                      ...+..   ..++             ..|... ...+.+ .+|++++|||||.++|++|||+|.+++||..|+++|....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~  314 (382)
T TIGR01984       236 DAEFLAELQQAFGWRLGKITQVGERKTYPLKL-RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDAR  314 (382)
T ss_pred             HHHHHHHHHHHHhhhccCeEEcCCccEeecch-hhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhc
Confidence            000000   0000             011110 011222 4899999999999999999999999999999999997764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06184 hypothetical protein; Provisional

Probab=99.91  E-value=9.4e-23  Score=222.07  Aligned_cols=268  Identities=16%  Similarity=0.137  Sum_probs=157.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATA-----TKFNPN  182 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~~  182 (535)
                      ++||+||| ||+|+++|+.|+++|++|+||||.+... ..+...++...++.|.++|+.+  ++.+...     ..|.+.
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~--~l~~~~~~~~~~~~~~~~   80 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLD--RVVAAGGLYPPMRIYRDD   80 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHH--HHHhcCccccceeEEeCC
Confidence            58999999 9999999999999999999999985332 2233346777888888889732  2221100     111111


Q ss_pred             -cc-cccccC--c--ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE---cCCeEEEcCeE
Q 009427          183 -RC-GFEGKG--E--IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLI  253 (535)
Q Consensus       183 -~~-~~~~~~--~--~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~---~~G~~i~a~lV  253 (535)
                       .+ .+....  .  ..........+++..+.+.|.+.+.+.|++++.+++|++++.+++++++++   .++++++||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~v  160 (502)
T PRK06184         81 GSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYL  160 (502)
T ss_pred             ceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEE
Confidence             00 000000  0  000001123466778889999999888999999999999988888888776   45578999999


Q ss_pred             EEccCCChHHHHHhCCCCCCCC-Cc-eeEEEEEecCCCCCCChHHHHH---HHhhhccCcc--------------CCCCC
Q 009427          254 IDAMGNFSPVVKQAFPAGSGPL-DR-TTYMFTYIDPQAGSPKLEELLE---RYWDLMPEYQ--------------GVTLD  314 (535)
Q Consensus       254 V~AdG~~S~v~~~~~p~~~~~~-~~-~~~~~~y~~~~~~~~~l~~~~~---~~~~~~P~~~--------------~~~~~  314 (535)
                      |+|||++|.+++++-....+.. .. ..+................+..   ..+.++|...              ....+
T Consensus       161 VgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  240 (502)
T PRK06184        161 VGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQAPLPPGGEPDLS  240 (502)
T ss_pred             EECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEEccCCCCcEEEEEEccCCCeEEEEEEcCCCccCCCC
Confidence            9999999999887422211111 11 1111111100000000000000   1111122110              00000


Q ss_pred             ccchhcc---hhcccc----------CCCC-CC-CCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427          315 NLEIQRV---IYGIFP----------TYRD-SP-LPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       315 ~~~~~r~---~~g~~P----------~~~~-~p-l~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~  378 (535)
                      .-.+.+.   ..+..+          .+.. .. .+.+ .+|++|+|||||.++|+.|||+|++++||..|+++|+..++
T Consensus       241 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~  320 (502)
T PRK06184        241 ADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLA  320 (502)
T ss_pred             HHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHc
Confidence            0000110   011000          0000 00 0122 49999999999999999999999999999999999998776


Q ss_pred             C
Q 009427          379 G  379 (535)
Q Consensus       379 ~  379 (535)
                      .
T Consensus       321 g  321 (502)
T PRK06184        321 G  321 (502)
T ss_pred             C
Confidence            4

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.91  E-value=9.3e-23  Score=217.51  Aligned_cols=284  Identities=17%  Similarity=0.196  Sum_probs=162.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccc-c-cccHHHHHHHHHcCCCChHhHHHHHhh----hcCC-
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQE-W-NISRKELLELVESGILVEDDIDEATAT----KFNP-  181 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~-~-~is~~~l~~L~~lGl~~~~~~~~~~~~----~~~~-  181 (535)
                      +||||||| ||+|+++|+.|+++|++|+||||...++.... . .+..+.++.+.. .+.....++..+..    .+.+ 
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~   83 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP-GFADSAPVERLITHEKLAFMTEK   83 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhh-hhhhcCcccceeeeeeEEEEcCC
Confidence            69999999 99999999999999999999999876543221 1 133344444311 00000001111100    0011 


Q ss_pred             Cccccccc-CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          182 NRCGFEGK-GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       182 ~~~~~~~~-~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      +...+... ..........+.+++..|.+.|.+.+.+.|++++.+++|+++..+++.+++...+|.+++|++||+|||.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN  163 (428)
T ss_pred             CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence            11111100 00011112245678999999999999999999999999999987776665444567789999999999999


Q ss_pred             hHHHHHhCCCCCCCCCceeEEEEEecCCCCCCC-hHH---------------------HHHHHhhhccCccCC------C
Q 009427          261 SPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPK-LEE---------------------LLERYWDLMPEYQGV------T  312 (535)
Q Consensus       261 S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~-l~~---------------------~~~~~~~~~P~~~~~------~  312 (535)
                      |.++++. ..... .+...+.+.+.......+. +..                     ++. +.|+.+.....      .
T Consensus       164 s~l~~~l-gl~~~-~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~g-gG~~~~~~~~~svG~~~~  240 (428)
T PRK10157        164 SILAEKL-GMAKR-VKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMG-GGFLYTNENTLSLGLVCG  240 (428)
T ss_pred             HHHHHHc-CCCCC-CCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcC-ceeEEEcCCeEEEEEEEe
Confidence            9888763 21110 1111222222111000000 000                     000 11222221110      0


Q ss_pred             CC--------------ccchh---cc----------hhccccCCCCCCCC-ccCCCeeEeecCCCcccc--cccccchHH
Q 009427          313 LD--------------NLEIQ---RV----------IYGIFPTYRDSPLP-AAFNRILQFGDASGIQSP--VSFGGFGSL  362 (535)
Q Consensus       313 ~~--------------~~~~~---r~----------~~g~~P~~~~~pl~-~~~~rvlliGDAA~~~~P--~~G~Gi~~a  362 (535)
                      .+              .+...   ++          ....+|.......+ ...++++++||||++++|  ++|+||+.|
T Consensus       241 ~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A  320 (428)
T PRK10157        241 LHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLA  320 (428)
T ss_pred             hHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHH
Confidence            00              00000   00          00123432211122 236999999999999998  599999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCChhchhhhCCCCchhhhh
Q 009427          363 TRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSAS  400 (535)
Q Consensus       363 l~da~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~~~  400 (535)
                      +.++..+|+.+.++++.++.+...|+.   |++.+...
T Consensus       321 ~~SG~lAAeai~~a~~~~~~s~~~l~~---Y~~~l~~~  355 (428)
T PRK10157        321 IAAGEAAAKTVLSAMKSDDFSKQKLAE---YRQHLESG  355 (428)
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhhHHH---HHHHHHHh
Confidence            999999999999999877776666554   45444433

>PRK06996 hypothetical protein; Provisional

Probab=99.91  E-value=5.3e-23  Score=217.59  Aligned_cols=264  Identities=17%  Similarity=0.165  Sum_probs=155.7

Q ss_pred             CCCcccEEEEc-chHHHHHHHHHHHCC----CcEEEEcccCCCC---CcccccccHHHHHHHHHcCCCChHhHHHHHh--
Q 009427          107 AVGTFDVIVCG-GTLGIFIATALSFKG----LRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATA--  176 (535)
Q Consensus       107 ~~~~~DVvIVG-G~aGl~~A~~LAr~G----~~V~liEr~~~~~---~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~--  176 (535)
                      .+.++||+||| ||+|+++|+.|+++|    ++|+|+|+.+...   ..+...++...++.|.++|+++..  ...+.  
T Consensus         8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~--~~~~~~~   85 (398)
T PRK06996          8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPAD--ATPIEHI   85 (398)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhc--CCcccEE
Confidence            34469999999 999999999999997    4799999985322   123344677788888888986521  00011  


Q ss_pred             hhcCC---CcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---eEEEc
Q 009427          177 TKFNP---NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSS  250 (535)
Q Consensus       177 ~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G---~~i~a  250 (535)
                      ..+..   +...+....  +..+...+.+++..|.+.|.+++.+.|++++.++++++++.+++++++++.++   ++++|
T Consensus        86 ~~~~~~~~g~~~~~~~~--~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a  163 (398)
T PRK06996         86 HVSQRGHFGRTLIDRDD--HDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRA  163 (398)
T ss_pred             EEecCCCCceEEecccc--cCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEee
Confidence            01110   111111110  11122355688899999999999999999999999999988888999888654   58999


Q ss_pred             CeEEEccCC-ChHHHHHhCCCCCCCCC-ceeEEEEEecCCCCCC-ChHHH-HHHHhhhccCccC----C-----------
Q 009427          251 HLIIDAMGN-FSPVVKQAFPAGSGPLD-RTTYMFTYIDPQAGSP-KLEEL-LERYWDLMPEYQG----V-----------  311 (535)
Q Consensus       251 ~lVV~AdG~-~S~v~~~~~p~~~~~~~-~~~~~~~y~~~~~~~~-~l~~~-~~~~~~~~P~~~~----~-----------  311 (535)
                      |+||+|||. +|.+++........... ...+.+......+... ....+ ..+.+.++|...+    .           
T Consensus       164 ~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~  243 (398)
T PRK06996        164 RIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEA  243 (398)
T ss_pred             eEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHH
Confidence            999999996 56666654332111111 1111111110000000 00000 0111222222110    0           


Q ss_pred             ----CCCccchhc---chhc-------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHH
Q 009427          312 ----TLDNLEIQR---VIYG-------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS  370 (535)
Q Consensus       312 ----~~~~~~~~r---~~~g-------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La  370 (535)
                          ..+...+..   ..++             .+|... ...+.+ .+|++++|||||.++|+.|||+|.+++||..|+
T Consensus       244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La  322 (398)
T PRK06996        244 ARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHAFPLGL-NAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLA  322 (398)
T ss_pred             HHHHcCCHHHHHHHHHHHhccccCceEEecceEEEeeec-ccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHH
Confidence                000000000   0111             011111 011222 499999999999999999999999999999999


Q ss_pred             HHHHH
Q 009427          371 TGVYE  375 (535)
Q Consensus       371 ~~l~~  375 (535)
                      ++|..
T Consensus       323 ~~L~~  327 (398)
T PRK06996        323 DALSD  327 (398)
T ss_pred             HHHHh
Confidence            99854

>PRK07045 putative monooxygenase; Reviewed

Probab=99.91  E-value=3.8e-23  Score=217.89  Aligned_cols=264  Identities=15%  Similarity=0.150  Sum_probs=153.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh------hhcCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA------TKFNP  181 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~------~~~~~  181 (535)
                      ++||+||| ||+|+++|+.|+++|++|+|+||.+.... .....+++..++.|.++|+++  .+.....      ..+..
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~--~~~~~~~~~~~~~~~~~~   82 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLD--DVFAAGGLRRDAMRLYHD   82 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHH--HHHhcccccccceEEecC
Confidence            68999999 99999999999999999999999864321 111125556667777779743  1111100      11111


Q ss_pred             Ccc-c-ccccCcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE--EEEEcCCeEEEcCeEEEc
Q 009427          182 NRC-G-FEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDA  256 (535)
Q Consensus       182 ~~~-~-~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv--~v~~~~G~~i~a~lVV~A  256 (535)
                      +.. . +....  .........+++..|.+.|.+++.+ .|++++.+++|++++.+++++  .|++++|+++++|+||+|
T Consensus        83 g~~~~~~~~~~--~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgA  160 (388)
T PRK07045         83 KELIASLDYRS--ASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGA  160 (388)
T ss_pred             CcEEEEecCCc--cccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEEC
Confidence            110 0 00000  0000001236778899999998865 478999999999998876663  567778889999999999


Q ss_pred             cCCChHHHHHhCCCC-CCCCCceeEEEEEecCCCCCCCh-HHHH---HHHhhhccCccCC-------C-------CCcc-
Q 009427          257 MGNFSPVVKQAFPAG-SGPLDRTTYMFTYIDPQAGSPKL-EELL---ERYWDLMPEYQGV-------T-------LDNL-  316 (535)
Q Consensus       257 dG~~S~v~~~~~p~~-~~~~~~~~~~~~y~~~~~~~~~l-~~~~---~~~~~~~P~~~~~-------~-------~~~~-  316 (535)
                      ||.+|.+|++.++.. ..+.......+.+.......+.. ..++   ..+.+.+|.....       .       .... 
T Consensus       161 DG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  240 (388)
T PRK07045        161 DGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTT  240 (388)
T ss_pred             CCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCccccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCC
Confidence            999999999765321 11111111122221110100000 0001   1122233322110       0       0000 


Q ss_pred             --chhcchhc--------------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHH
Q 009427          317 --EIQRVIYG--------------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV  373 (535)
Q Consensus       317 --~~~r~~~g--------------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l  373 (535)
                        .+.+.+..                    .+|... ...+.+ .+|+++||||||.++|++|||+|.+++|+..|++.|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L  319 (388)
T PRK07045        241 RTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGR-MNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACL  319 (388)
T ss_pred             HHHHHHHHhhhcCccchHHHhccCcccccceeecCc-cccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHH
Confidence              00000000                    011111 112222 599999999999999999999999999999999999


Q ss_pred             HHHHh
Q 009427          374 YEAVR  378 (535)
Q Consensus       374 ~~al~  378 (535)
                      ..++.
T Consensus       320 ~~~~~  324 (388)
T PRK07045        320 DLHLS  324 (388)
T ss_pred             HhhcC
Confidence            87654

>PRK08244 hypothetical protein; Provisional

Probab=99.91  E-value=1.3e-22  Score=220.57  Aligned_cols=262  Identities=22%  Similarity=0.285  Sum_probs=158.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh----hhcCC--
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA----TKFNP--  181 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~----~~~~~--  181 (535)
                      ++||+||| ||+|+++|+.|+++|++|+||||.+.... .+...++...++.|.++|+.+  ++...-.    ..+..  
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~--~l~~~~~~~~~~~~~~~~   79 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLE--RFLEKGRKLPSGHFAGLD   79 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHH--HHHhhcccccceEEeccc
Confidence            48999999 99999999999999999999999864322 233346777888888889842  2222110    00100  


Q ss_pred             CcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--CC-eEEEcCeEEEccC
Q 009427          182 NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG-KILSSHLIIDAMG  258 (535)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~--~G-~~i~a~lVV~AdG  258 (535)
                      ....+....   ......+.+++..+.+.|.+.+.+.|++++.+++|++++.+++++++++.  +| ++++||+||+|||
T Consensus        80 ~~~~~~~~~---~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG  156 (493)
T PRK08244         80 TRLDFSALD---TSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADG  156 (493)
T ss_pred             ccCCcccCC---CCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCC
Confidence            001111000   00111234677888999999998889999999999999888888877664  45 4799999999999


Q ss_pred             CChHHHHHh---CCCCCCCCCceeEEEEEecCCCCCCChHHHH--HHHhhhccCccCC-------------C-CCccc--
Q 009427          259 NFSPVVKQA---FPAGSGPLDRTTYMFTYIDPQAGSPKLEELL--ERYWDLMPEYQGV-------------T-LDNLE--  317 (535)
Q Consensus       259 ~~S~v~~~~---~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~--~~~~~~~P~~~~~-------------~-~~~~~--  317 (535)
                      .+|.++++.   ++...  .....+...+....+........+  +++++++|...+.             . .....  
T Consensus       157 ~~S~vR~~lgi~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (493)
T PRK08244        157 AGSIVRKQAGIAFPGTD--ATFTAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLE  234 (493)
T ss_pred             CChHHHHhcCCCccCCC--cceEEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHH
Confidence            999998874   22211  111111111111101000000000  1223333332110             0 00000  


Q ss_pred             -hhc---chhcc-----ccCCCC-CCC-----Ccc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427          318 -IQR---VIYGI-----FPTYRD-SPL-----PAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       318 -~~r---~~~g~-----~P~~~~-~pl-----~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~  378 (535)
                       +.+   ..++.     .|.+.. .+.     +.+ .+|++|+|||||.++|+.|||+|++|+||..|+++|+..++
T Consensus       235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~  311 (493)
T PRK08244        235 ELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIK  311 (493)
T ss_pred             HHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHc
Confidence             000   01110     011100 010     122 48999999999999999999999999999999999998885

>PRK07190 hypothetical protein; Provisional

Probab=99.91  E-value=2.3e-22  Score=217.49  Aligned_cols=267  Identities=15%  Similarity=0.117  Sum_probs=156.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA-----TKFNPN  182 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~~  182 (535)
                      .+||+||| ||+|+++|+.|+++|++|+||||.+.... .+...+....++.|..+|+++  .+.....     ..|.++
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~--~l~~~~~~~~~~~~~~~g   82 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFD--ELYPLGKPCNTSSVWANG   82 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHH--HHHhhCccceeEEEecCC
Confidence            58999999 99999999999999999999999864321 222236677788887778732  1111100     111111


Q ss_pred             ccccccc---Ccc-eeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          183 RCGFEGK---GEI-WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       183 ~~~~~~~---~~~-~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                      .......   ... .........+....+.+.|.+++.+.|++++.+++|++++.+++++++.+.+|++++|++||+|||
T Consensus        83 ~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG  162 (487)
T PRK07190         83 KFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADG  162 (487)
T ss_pred             ceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCC
Confidence            1000000   000 000011123566778888989998899999999999999988888888877788899999999999


Q ss_pred             CChHHHHHh-CCCCCCCCCceeEEEE-E--ecCCCCCCChHHH--HHHHhhhccCccCC-------CCCccch-------
Q 009427          259 NFSPVVKQA-FPAGSGPLDRTTYMFT-Y--IDPQAGSPKLEEL--LERYWDLMPEYQGV-------TLDNLEI-------  318 (535)
Q Consensus       259 ~~S~v~~~~-~p~~~~~~~~~~~~~~-y--~~~~~~~~~l~~~--~~~~~~~~P~~~~~-------~~~~~~~-------  318 (535)
                      .+|.++++. ++. .+......+... .  ....+..+....+  ..+.+.++|...+.       ..+.+..       
T Consensus       163 ~~S~vR~~lgi~f-~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~~~~~~t~~~~~~~l  241 (487)
T PRK07190        163 SRSFVRNHFNVPF-EIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRMDTKDFTLEQAIAKI  241 (487)
T ss_pred             CCHHHHHHcCCCc-cccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEcCCCCCCHHHHHHHH
Confidence            999999873 221 110011111111 1  1000110100000  01111122322110       0001110       


Q ss_pred             hcchhcc------------ccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhC
Q 009427          319 QRVIYGI------------FPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG  379 (535)
Q Consensus       319 ~r~~~g~------------~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~  379 (535)
                      .+.+.+.            ++.......... .+||+|+|||||.++|..|||||++++||.+|+++|+..++.
T Consensus       242 ~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g  315 (487)
T PRK07190        242 NHAMQPHRLGFKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHH  315 (487)
T ss_pred             HHhcCCCCCceEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcC
Confidence            0101010            111110000122 499999999999999999999999999999999999987764

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.90  E-value=2.5e-22  Score=202.48  Aligned_cols=253  Identities=23%  Similarity=0.263  Sum_probs=147.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHh-hhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA-TKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~-~~~~~~~~~~~  187 (535)
                      |||+||| |++|+++|+.|++.|++|+||||....+.. ....+....++.+   +............ ..+....-.. 
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~-   76 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEEL---DLPLELIVNLVRGARFFSPNGDSV-   76 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHh---cCCchhhhhheeeEEEEcCCCcEE-
Confidence            6999999 999999999999999999999998644321 1122444555544   3211111100000 0011100000 


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-CeEEEcCeEEEccCCChHHHHH
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~-G~~i~a~lVV~AdG~~S~v~~~  266 (535)
                         .........+.+++..+.+.|.+.+.+.|++++.+++|+++..+++++.+.+.+ +.+++||+||+|||.+|.++++
T Consensus        77 ---~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~  153 (295)
T TIGR02032        77 ---EIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKK  153 (295)
T ss_pred             ---EeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHHh
Confidence               000011123457889999999999999999999999999998888887776654 4679999999999999988775


Q ss_pred             hCCCCCCCCCc-eeEEEEEecCC-CCCCC-hHHHH------HHHhhhccCccCC-------C------------------
Q 009427          267 AFPAGSGPLDR-TTYMFTYIDPQ-AGSPK-LEELL------ERYWDLMPEYQGV-------T------------------  312 (535)
Q Consensus       267 ~~p~~~~~~~~-~~~~~~y~~~~-~~~~~-l~~~~------~~~~~~~P~~~~~-------~------------------  312 (535)
                      . +....+... ..+...+.... ...+. +.-++      ..|.|++|...+.       .                  
T Consensus       154 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  232 (295)
T TIGR02032       154 L-GLRKEPRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAEEGEDLKKYLKDFLAR  232 (295)
T ss_pred             c-CCCCCCcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCCCCCCHHHHHHHHHHh
Confidence            3 221110001 11111111110 00010 00000      2445556643220       0                  


Q ss_pred             ---CCccchhcchhccccCCCCCCCCc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHH
Q 009427          313 ---LDNLEIQRVIYGIFPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV  373 (535)
Q Consensus       313 ---~~~~~~~r~~~g~~P~~~~~pl~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l  373 (535)
                         +++....+.....+|...  +... ..+|++++|||||+++|++|||++.+++||..+|++|
T Consensus       233 ~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~  295 (295)
T TIGR02032       233 RPELKDAETVEVIGAPIPIGR--PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI  295 (295)
T ss_pred             CcccccCcEEeeeceeeccCC--CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence               000000000111122221  2222 3699999999999999999999999999999888753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07588 hypothetical protein; Provisional

Probab=99.90  E-value=5.8e-22  Score=209.11  Aligned_cols=258  Identities=15%  Similarity=0.041  Sum_probs=149.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc-
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG-  188 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~-  188 (535)
                      ||+||| ||+|+++|+.|+++|++|+|+||.+.... ...+.++...++.|.++|+++  .+...   .+....+.+.. 
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~--~l~~~---~~~~~~~~~~~~   76 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITD--QLREA---GYQIEHVRSVDP   76 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHH--HHHhc---cCCccceEEEcC
Confidence            799999 99999999999999999999999853221 122334445566677778732  22211   11101111110 


Q ss_pred             cCcc--------eeee--ccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          189 KGEI--------WVED--ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       189 ~~~~--------~~~~--~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                      .+..        +...  ...+.+++..|.+.|.+.+ ..+++++++++|++++.++++++|++++|+++++|+||+|||
T Consensus        77 ~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG  155 (391)
T PRK07588         77 TGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADG  155 (391)
T ss_pred             CCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCC
Confidence            0100        0000  0113567888888887755 447899999999999888888989988898899999999999


Q ss_pred             CChHHHHHhCCCCCCCCCceeEEEEEecC---CCCCCChHHHH---HHHhhhccCccC--------------CCCCccch
Q 009427          259 NFSPVVKQAFPAGSGPLDRTTYMFTYIDP---QAGSPKLEELL---ERYWDLMPEYQG--------------VTLDNLEI  318 (535)
Q Consensus       259 ~~S~v~~~~~p~~~~~~~~~~~~~~y~~~---~~~~~~l~~~~---~~~~~~~P~~~~--------------~~~~~~~~  318 (535)
                      .+|.+|+..++............+.....   .+........+   +.++..+|...+              ........
T Consensus       156 ~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (391)
T PRK07588        156 LHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEE  235 (391)
T ss_pred             CCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCCHHHH
Confidence            99999998654321100111111111110   00000000000   111112221110              00000000


Q ss_pred             ---hcchh-----------ccccCC--------CCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427          319 ---QRVIY-----------GIFPTY--------RDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE  375 (535)
Q Consensus       319 ---~r~~~-----------g~~P~~--------~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~  375 (535)
                         .+..+           ..++..        ...+.+.+ .+|++++|||||.++|+.|||+|.+++||..|++.|..
T Consensus       236 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~  315 (391)
T PRK07588        236 KQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELAR  315 (391)
T ss_pred             HHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHh
Confidence               00000           011100        00122233 49999999999999999999999999999999999864

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.90  E-value=3e-22  Score=210.00  Aligned_cols=312  Identities=21%  Similarity=0.347  Sum_probs=188.9

Q ss_pred             cEEEEc-chHHHHHHHHH--HHCCCcEEEEcccCCC--CCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          112 DVIVCG-GTLGIFIATAL--SFKGLRVAIVERNTLK--GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~L--Ar~G~~V~liEr~~~~--~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      |||||| ||||+++|+.|  ++.|.+|+|||+....  ..++.|......+.           .++.++.+.|+...+.+
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~-----------~~~~~v~~~w~~~~v~~   69 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLG-----------PLDSLVSHRWSGWRVYF   69 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccccccc-----------chHHHHheecCceEEEe
Confidence            899999 99999999999  8889999999998644  33445543222111           13455556665333333


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH--
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV--  264 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~--  264 (535)
                      .... ..........+++..|.+.|.+++. .++.++.+++|++|+.+++++.+.+++|.+++|++||||+|..+...  
T Consensus        70 ~~~~-~~~~~~~Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~  147 (374)
T PF05834_consen   70 PDGS-RILIDYPYCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPKARP  147 (374)
T ss_pred             CCCc-eEEcccceEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccccccc
Confidence            2221 1111222346899999999999998 56677788999999888888888888999999999999999765421  


Q ss_pred             --HHhCCC----CCCC-CC-ceeEEEEEecCCC-CCCChHHHHHHHhhhccCccCC------------------------
Q 009427          265 --KQAFPA----GSGP-LD-RTTYMFTYIDPQA-GSPKLEELLERYWDLMPEYQGV------------------------  311 (535)
Q Consensus       265 --~~~~p~----~~~~-~~-~~~~~~~y~~~~~-~~~~l~~~~~~~~~~~P~~~~~------------------------  311 (535)
                        .|.|-+    .+.| .+ .+..++.|+.... ..       ..|++++|...+.                        
T Consensus       148 ~~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~-------~~F~Y~lP~~~~~alvE~T~fs~~~~~~~~~~~~~l~  220 (374)
T PF05834_consen  148 LGLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADG-------PSFLYVLPFSEDRALVEETSFSPRPALPEEELKARLR  220 (374)
T ss_pred             cccceeEEEEEeccCCCCCCCceEEEEecccCCCCC-------ceEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHH
Confidence              121100    0001 11 1122223322111 01       1344444443210                        


Q ss_pred             ------CCCccchhcchhccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCCCChh
Q 009427          312 ------TLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSY  385 (535)
Q Consensus       312 ------~~~~~~~~r~~~g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~~~~  385 (535)
                            ..+..++.+...|.||+....+.+..+++++.||+|+++++|.||+++..+++.+..+|+.+.+.   + ....
T Consensus       221 ~~l~~~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~~---~-~~~~  296 (374)
T PF05834_consen  221 RYLERLGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAKG---G-APLR  296 (374)
T ss_pred             HHHHHcCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhhc---c-cccc
Confidence                  01112222345588998543345556788999999999999999999998888888777766542   1 1111


Q ss_pred             chhhhCCCCchhhhhHHHHHhh---hhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhhcCcchHHHHH
Q 009427          386 SLSLLNPYMPNLSASWLFQRAM---SAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTL  456 (535)
Q Consensus       386 ~l~~l~~y~~~~~~~~~~~~~m---~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~~~~~~l~~~~  456 (535)
                      .   ..++.+  ...|....++   ........++..    ...||..|.++|++....|+....++.+..+++
T Consensus       297 ~---~~~~~~--~~~~~~~~flr~l~~~~l~~~~~~~----~~~f~~~f~~l~~~~~~~FL~~~~~~~~~~~i~  361 (374)
T PF05834_consen  297 A---WSPLWP--RERWRDRRFLRVLGLEVLLRLPPDG----RRIFFRMFFRLPPDRIARFLSERSSLADDLRIM  361 (374)
T ss_pred             c---cccccH--HHHHHHHHHHHHhcchhhcccChhH----HHHHHHHHhCCCHHHHHhHhcCCCCHHHHHHHH
Confidence            1   111111  0111111111   111112223333    466777778899999999999998887776665

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.90  E-value=1e-21  Score=207.27  Aligned_cols=267  Identities=18%  Similarity=0.212  Sum_probs=154.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC---CCcEEEEcccC-CCC---C--cccccccHHHHHHHHHcCCCChHhHHHHHh--h
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK---GLRVAIVERNT-LKG---R--EQEWNISRKELLELVESGILVEDDIDEATA--T  177 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~---G~~V~liEr~~-~~~---~--~~~~~is~~~l~~L~~lGl~~~~~~~~~~~--~  177 (535)
                      .+||+||| ||+|+++|+.|+++   |++|+|+||.. ...   .  .+...++...++.|.++|+++  ++.....  .
T Consensus         3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~--~~~~~~~~~~   80 (395)
T PRK05732          3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQ--ALADCATPIT   80 (395)
T ss_pred             cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChh--hhHhhcCCcc
Confidence            58999999 99999999999998   99999999952 211   0  122345666677777789853  2222110  0


Q ss_pred             --hc-CCCccc-ccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCe
Q 009427          178 --KF-NPNRCG-FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHL  252 (535)
Q Consensus       178 --~~-~~~~~~-~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~l  252 (535)
                        .+ ..+... .......+......+.+++..+.+.|.+.+.+. |++++.+++|+++..+++++.+++++|.+++||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~  160 (395)
T PRK05732         81 HIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRL  160 (395)
T ss_pred             EEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence              00 001000 000000000111224567778888888888764 7899999999999887888888888888899999


Q ss_pred             EEEccCCChHHHHHhCCCCCCCCCceeEEE-EEecCCC-CCCChHHHH-HHHhhhccCccCC----------------CC
Q 009427          253 IIDAMGNFSPVVKQAFPAGSGPLDRTTYMF-TYIDPQA-GSPKLEELL-ERYWDLMPEYQGV----------------TL  313 (535)
Q Consensus       253 VV~AdG~~S~v~~~~~p~~~~~~~~~~~~~-~y~~~~~-~~~~l~~~~-~~~~~~~P~~~~~----------------~~  313 (535)
                      ||+|||.+|.+++..............+.. .+..... ....+..+. .+.+.++|...+.                ..
T Consensus       161 vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~  240 (395)
T PRK05732        161 LVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSW  240 (395)
T ss_pred             EEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcC
Confidence            999999999988874222111000111111 1110000 000000000 1111122221110                00


Q ss_pred             Cccchh---cchhcc-------------ccCCCCCCCCc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHH
Q 009427          314 DNLEIQ---RVIYGI-------------FPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA  376 (535)
Q Consensus       314 ~~~~~~---r~~~g~-------------~P~~~~~pl~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~a  376 (535)
                      +...+.   +..++.             .|... ...+. ..+|++++|||||.++|++|||+|.+++||..|+++|...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~  319 (395)
T PRK05732        241 SDAQFLAELQQAFGWRLGRITHAGKRSAYPLAL-VTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQA  319 (395)
T ss_pred             CHHHHHHHHHHHHHhhhcceeecCCcceecccc-cchhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHH
Confidence            000000   000110             01100 01112 2599999999999999999999999999999999999887


Q ss_pred             HhC
Q 009427          377 VRG  379 (535)
Q Consensus       377 l~~  379 (535)
                      ++.
T Consensus       320 ~~~  322 (395)
T PRK05732        320 LAR  322 (395)
T ss_pred             Hhc
Confidence            754

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.89  E-value=2e-21  Score=204.96  Aligned_cols=154  Identities=13%  Similarity=0.123  Sum_probs=101.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC---CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG---REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~---~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      .+||+||| ||+|+++|+.|+++|++|+||||.+...   ..+...++...++.|.++|+++  ++...   .+......
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~--~l~~~---~~~~~~~~   76 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDE--RMDRE---GLVHEGTE   76 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChH--HHHhc---CceecceE
Confidence            47999999 9999999999999999999999986321   1122336667788888889842  22221   11101111


Q ss_pred             ccccCcceee---ec---cc-cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeEEEEEc-CCe--EEEcCeEE
Q 009427          186 FEGKGEIWVE---DI---LN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAAVLLLA-EGK--ILSSHLII  254 (535)
Q Consensus       186 ~~~~~~~~~~---~~---~~-~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~-~~~gv~v~~~-~G~--~i~a~lVV  254 (535)
                      +...+.....   ..   .. .......+.+.|.+++.+.|+.++++++++.+.. +++++.|++. +|+  +++||+||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvI  156 (390)
T TIGR02360        77 IAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIA  156 (390)
T ss_pred             EeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEE
Confidence            1111100000   00   00 0123467778888888888999999988887754 4456666664 674  69999999


Q ss_pred             EccCCChHHHHHhC
Q 009427          255 DAMGNFSPVVKQAF  268 (535)
Q Consensus       255 ~AdG~~S~v~~~~~  268 (535)
                      +|||.+|.+|++..
T Consensus       157 GADG~~S~VR~~l~  170 (390)
T TIGR02360       157 GCDGFHGVSRASIP  170 (390)
T ss_pred             ECCCCchhhHHhcC
Confidence            99999999999853

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK05868 hypothetical protein; Validated

Probab=99.89  E-value=8.8e-22  Score=206.42  Aligned_cols=157  Identities=18%  Similarity=0.133  Sum_probs=106.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCCC-
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATA-----TKFNPN-  182 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~~-  182 (535)
                      .||+||| ||+|+++|+.|+++|++|+|+||.+..... ....++...++.|.++|+++  .+.....     ..+.+. 
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~--~~~~~~~~~~~~~~~~~~g   79 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLA--AAQEHKTRIRGASFVDRDG   79 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHH--HHHhhccCccceEEEeCCC
Confidence            4899999 999999999999999999999998643221 12234556677777789742  2222110     011111 


Q ss_pred             cc-cccccC--cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          183 RC-GFEGKG--EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       183 ~~-~~~~~~--~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      .. ......  ..+......+.+.+..|.+.|.+. ...|++++++++|++++.+++++++++++|.+++||+||+|||.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~  158 (372)
T PRK05868         80 NELFRDTESTPTGGPVNSPDIELLRDDLVELLYGA-TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL  158 (372)
T ss_pred             CEEeecccccccCCCCCCceEEEEHHHHHHHHHHh-ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence            10 000000  001111112346677888776553 35689999999999998878889999989989999999999999


Q ss_pred             ChHHHHHhCCC
Q 009427          260 FSPVVKQAFPA  270 (535)
Q Consensus       260 ~S~v~~~~~p~  270 (535)
                      +|.+|++.++.
T Consensus       159 ~S~vR~~~~~~  169 (372)
T PRK05868        159 HSNVRRLVFGP  169 (372)
T ss_pred             CchHHHHhcCC
Confidence            99999997654

>PRK06847 hypothetical protein; Provisional

Probab=99.89  E-value=2.3e-21  Score=203.18  Aligned_cols=156  Identities=22%  Similarity=0.265  Sum_probs=110.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      ..||+||| ||+|+++|+.|++.|++|+|+|+....... ....++...++.|.++|+++  .+..   ..+......+.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~--~~~~---~~~~~~~~~~~   78 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLD--ECLE---AGFGFDGVDLF   78 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHH--HHHH---hCCCccceEEE
Confidence            57999999 999999999999999999999998532211 11235566677777778732  1111   11111111110


Q ss_pred             c-cCcc---------eeee-ccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEc
Q 009427          188 G-KGEI---------WVED-ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (535)
Q Consensus       188 ~-~~~~---------~~~~-~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~A  256 (535)
                      . .+..         .... .....+++..+.+.|.+.+.+.|++++.+++|++++.+++++.+.+.+|+++.||+||+|
T Consensus        79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~A  158 (375)
T PRK06847         79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGA  158 (375)
T ss_pred             CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEEC
Confidence            0 0100         0000 112457888999999999988899999999999998877888888888888999999999


Q ss_pred             cCCChHHHHHhCCC
Q 009427          257 MGNFSPVVKQAFPA  270 (535)
Q Consensus       257 dG~~S~v~~~~~p~  270 (535)
                      ||.+|.++++.++.
T Consensus       159 dG~~s~~r~~l~~~  172 (375)
T PRK06847        159 DGLYSKVRSLVFPD  172 (375)
T ss_pred             cCCCcchhhHhcCC
Confidence            99999999887665

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.89  E-value=1.3e-21  Score=215.26  Aligned_cols=278  Identities=15%  Similarity=0.134  Sum_probs=158.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC-CCCcccccccHHHHHHHHHcCCCChHhHHHH-Hh----hhcCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL-KGREQEWNISRKELLELVESGILVEDDIDEA-TA----TKFNP  181 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~-~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~-~~----~~~~~  181 (535)
                      .++||+||| ||+|+++|+.|+++|++|+||||.+. ....+...++...++.|.++|+.+  ++... ..    ..+..
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~--~l~~~~~~~~~~~~~~~   99 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGE--RMVDKGVSWNVGKVFLR   99 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcH--HHHhhCceeeceeEEeC
Confidence            468999999 99999999999999999999999862 223344557778888888889842  22111 00    01111


Q ss_pred             C-c-ccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc--CCe-EEEcCeEEE
Q 009427          182 N-R-CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA--EGK-ILSSHLIID  255 (535)
Q Consensus       182 ~-~-~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~--~G~-~i~a~lVV~  255 (535)
                      . . ..+...............++...+.+.|.+++.+. +++++.+++|++++.+++++++++.  +|. +++||+||+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVg  179 (547)
T PRK08132        100 DEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIA  179 (547)
T ss_pred             CCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEE
Confidence            1 0 00100000000000112356778889999988876 6899999999999888888876653  443 699999999


Q ss_pred             ccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCCCh-HHHH------HHHhhhccCccC-----------CC----C
Q 009427          256 AMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKL-EELL------ERYWDLMPEYQG-----------VT----L  313 (535)
Q Consensus       256 AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~------~~~~~~~P~~~~-----------~~----~  313 (535)
                      |||.+|.+++.+.....+......+.+.........+.. ..++      ..+..+.|...+           ..    .
T Consensus       180 ADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (547)
T PRK08132        180 CDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDFQLGWDADPEAEK  259 (547)
T ss_pred             CCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEEecCCCCCchhhc
Confidence            999999998874322122111111111100000000000 0000      001111111100           00    0


Q ss_pred             CccchhcchhccccC-----------C--CCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhC
Q 009427          314 DNLEIQRVIYGIFPT-----------Y--RDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG  379 (535)
Q Consensus       314 ~~~~~~r~~~g~~P~-----------~--~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~  379 (535)
                      ..-.+.+.+...++.           +  .......+ .+||+|+|||||.++|+.|||+|++++||..|+++|+..++.
T Consensus       260 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g  339 (547)
T PRK08132        260 KPENVIPRVRALLGEDVPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRG  339 (547)
T ss_pred             CHHHHHHHHHHHcCCCCCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcC
Confidence            000000000011110           0  00111222 599999999999999999999999999999999999987753


Q ss_pred             CCCChhchhh
Q 009427          380 DFVDSYSLSL  389 (535)
Q Consensus       380 ~~~~~~~l~~  389 (535)
                       ......|..
T Consensus       340 -~~~~~lL~~  348 (547)
T PRK08132        340 -RAPDSLLDS  348 (547)
T ss_pred             -CCcHHHHHH
Confidence             333444433

>PRK06126 hypothetical protein; Provisional

Probab=99.89  E-value=2.4e-21  Score=213.16  Aligned_cols=267  Identities=16%  Similarity=0.187  Sum_probs=154.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHh-hhcC------
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATA-TKFN------  180 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-~~~~------  180 (535)
                      ++||+||| ||+|+++|+.|+++|++|+|+||.+... ..+...++.+.++.|.++|+.  +++.+.-. ..+.      
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~--~~l~~~g~~~~~~~~~~~~   84 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIA--DEVRSAGLPVDYPTDIAYF   84 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChH--HHHHhhcCCccccCCceEE
Confidence            68999999 9999999999999999999999985322 223344677888888888973  22222110 0000      


Q ss_pred             ---CCc-c-ccccc--Ccc----------eeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEE
Q 009427          181 ---PNR-C-GFEGK--GEI----------WVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLL  242 (535)
Q Consensus       181 ---~~~-~-~~~~~--~~~----------~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~  242 (535)
                         .+. + .+...  ...          +........+++..+.+.|.+.+.+. +++++++++|++++.+++++++.+
T Consensus        85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~  164 (545)
T PRK06126         85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATV  164 (545)
T ss_pred             ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEE
Confidence               010 0 00000  000          00011123467778889999998765 789999999999988888877765


Q ss_pred             c---CC--eEEEcCeEEEccCCChHHHHHhCCCCCCCC-CceeEEEEEecC-----CCCCCChHHH-H------------
Q 009427          243 A---EG--KILSSHLIIDAMGNFSPVVKQAFPAGSGPL-DRTTYMFTYIDP-----QAGSPKLEEL-L------------  298 (535)
Q Consensus       243 ~---~G--~~i~a~lVV~AdG~~S~v~~~~~p~~~~~~-~~~~~~~~y~~~-----~~~~~~l~~~-~------------  298 (535)
                      .   +|  .+++||+||+|||++|.+|+++-....+.. ......+.+...     ....+....+ +            
T Consensus       165 ~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~  244 (545)
T PRK06126        165 EDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAID  244 (545)
T ss_pred             EECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEECCCccEEEEEEC
Confidence            3   35  368999999999999999887422111111 011111111110     0000000000 0            


Q ss_pred             -HHHhhhc--cCcc-CCCCCccchh---cchhcc-ccC-------CC--CCCCCcc-CCCeeEeecCCCcccccccccch
Q 009427          299 -ERYWDLM--PEYQ-GVTLDNLEIQ---RVIYGI-FPT-------YR--DSPLPAA-FNRILQFGDASGIQSPVSFGGFG  360 (535)
Q Consensus       299 -~~~~~~~--P~~~-~~~~~~~~~~---r~~~g~-~P~-------~~--~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~  360 (535)
                       ...|.+.  +... ........+.   +..++. ++.       +.  ....+.+ .+||+|+|||||.++|+.|||+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N  324 (545)
T PRK06126        245 GRDEWLFHQLRGGEDEFTIDDVDARAFVRRGVGEDIDYEVLSVVPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMN  324 (545)
T ss_pred             CCCeEEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCeEEEeecccchhheehhhhccCCEEEechhhccCCCCcCcccc
Confidence             0011111  1000 0000000011   111110 000       00  0011222 59999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 009427          361 SLTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       361 ~al~da~~La~~l~~al~  378 (535)
                      ++++||..|+++|+..++
T Consensus       325 ~gieDa~~La~~La~~~~  342 (545)
T PRK06126        325 TGIGDAVNLAWKLAAVLN  342 (545)
T ss_pred             hhHHHHHHHHHHHHHHHc
Confidence            999999999999988764

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.88  E-value=2.2e-21  Score=204.95  Aligned_cols=155  Identities=14%  Similarity=0.111  Sum_probs=109.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      ..||+||| ||+|+++|+.|++.|++|+|+||.+.... .+...+++..++.|.++|+.+  .+...   .+....+.+.
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~--~~~~~---~~~~~~~~~~   78 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGE--AARQR---AVFTDHLTMM   78 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChH--HHHhh---ccCCcceEEE
Confidence            47999999 99999999999999999999999864321 112235667777888889743  22211   1111111110


Q ss_pred             c--cCcc---------ee--eeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeE
Q 009427          188 G--KGEI---------WV--EDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (535)
Q Consensus       188 ~--~~~~---------~~--~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lV  253 (535)
                      .  .+..         +.  .......+++..+.+.|.+++.+.+ ++++.+++|++++.+++++.+.+.+|+++.||+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v  158 (396)
T PRK08163         79 DAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDAL  158 (396)
T ss_pred             eCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEE
Confidence            0  0000         00  0001124788899999999988775 8999999999998877888888888888999999


Q ss_pred             EEccCCChHHHHHhCC
Q 009427          254 IDAMGNFSPVVKQAFP  269 (535)
Q Consensus       254 V~AdG~~S~v~~~~~p  269 (535)
                      |+|||.+|.++++.++
T Consensus       159 V~AdG~~S~~r~~~~g  174 (396)
T PRK08163        159 IGCDGVKSVVRQSLVG  174 (396)
T ss_pred             EECCCcChHHHhhccC
Confidence            9999999999988654

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.88  E-value=7.6e-21  Score=211.46  Aligned_cols=157  Identities=18%  Similarity=0.182  Sum_probs=106.3

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh-----hhc
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA-----TKF  179 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~  179 (535)
                      ++++||+||| ||+|+++|+.|++. |++|.||||.+-... .+.-.++.+.++.|..+|+.+  .+...-.     ..|
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d--~l~~~g~~~~~~~~~  107 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAE--RILKEAYWINETAFW  107 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchH--HHHhhcccccceEEE
Confidence            4479999999 99999999999995 999999999853211 222346788888888889843  2221100     112


Q ss_pred             CCC-----ccc----ccccCcceeeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC---eEEEEEc--
Q 009427          180 NPN-----RCG----FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN---AAVLLLA--  243 (535)
Q Consensus       180 ~~~-----~~~----~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~~---gv~v~~~--  243 (535)
                      .+.     .+.    +........ ......+++..+.+.|.+.+.+.|+  ++..+++|++++.+++   .++++++  
T Consensus       108 ~~~~~~~~~i~r~~~~~~~~~~~~-~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~  186 (634)
T PRK08294        108 KPDPADPSTIVRTGRVQDTEDGLS-EFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRT  186 (634)
T ss_pred             cCCCccccceeccccccccCCCCC-CCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEEC
Confidence            211     000    000000000 0112346788899999999988764  6788999999987643   3777664  


Q ss_pred             ----CC--eEEEcCeEEEccCCChHHHHHh
Q 009427          244 ----EG--KILSSHLIIDAMGNFSPVVKQA  267 (535)
Q Consensus       244 ----~G--~~i~a~lVV~AdG~~S~v~~~~  267 (535)
                          +|  ++++||+||+|||++|.+|+++
T Consensus       187 ~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l  216 (634)
T PRK08294        187 DGEHEGEEETVRAKYVVGCDGARSRVRKAI  216 (634)
T ss_pred             CCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence                35  5799999999999999999985

>PRK06753 hypothetical protein; Provisional

Probab=99.88  E-value=1.1e-21  Score=205.52  Aligned_cols=254  Identities=21%  Similarity=0.255  Sum_probs=152.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc-
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG-  188 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~-  188 (535)
                      ||+||| ||+|+++|+.|+++|++|+|+||++.... .....++...++.|..+|+++  .+... .  .......+.. 
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~--~~~~~-~--~~~~~~~~~~~   76 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAK--GIKNA-G--QILSTMNLLDD   76 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHH--HHHhc-C--CcccceeEEcC
Confidence            799999 99999999999999999999999864322 122346677778887778632  22111 0  0001111110 


Q ss_pred             cCcc-----eeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          189 KGEI-----WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       189 ~~~~-----~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      .+..     +......+.+++..|.+.|.+.+.  +.+++++++|++++.+++++.+++++|+++++|+||+|||.+|.+
T Consensus        77 ~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v  154 (373)
T PRK06753         77 KGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV  154 (373)
T ss_pred             CCCEEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence            1110     001122356888999999988764  358999999999988888888988888889999999999999999


Q ss_pred             HHHhCCCCCCCCCceeE-EEEEecCCCC--C-CChHHHH--HHHhhhccCccCC-------C-------CCccc---hh-
Q 009427          264 VKQAFPAGSGPLDRTTY-MFTYIDPQAG--S-PKLEELL--ERYWDLMPEYQGV-------T-------LDNLE---IQ-  319 (535)
Q Consensus       264 ~~~~~p~~~~~~~~~~~-~~~y~~~~~~--~-~~l~~~~--~~~~~~~P~~~~~-------~-------~~~~~---~~-  319 (535)
                      |++..+... + ....+ .+.+......  . .....++  +++++++|...+.       .       .....   .. 
T Consensus       155 R~~~~~~~~-~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  232 (373)
T PRK06753        155 RQSVNADSK-V-RYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQA  232 (373)
T ss_pred             HHHhCCCCC-c-eEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccccccHHHHHH
Confidence            998765421 1 11111 1111100000  0 0110111  1223333332110       0       00000   00 


Q ss_pred             ---------cchhccc--------cCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427          320 ---------RVIYGIF--------PTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  374 (535)
Q Consensus       320 ---------r~~~g~~--------P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~  374 (535)
                               +.+....        +.+...+.+.+ .+|+++||||||.++|+.|||+|.+++||..|++.|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~  305 (373)
T PRK06753        233 YFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLN  305 (373)
T ss_pred             HHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhh
Confidence                     0000000        01111122333 5899999999999999999999999999999998874

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.88  E-value=1.9e-21  Score=205.94  Aligned_cols=152  Identities=16%  Similarity=0.132  Sum_probs=105.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      -+|+||| ||+|+++|+.|+++|++|+|+||.+... ..+...++...++.|.++|+++  ++...   .+.+..+.+..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~--~l~~~---~~~~~~~~~~~   77 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVAD--RLSGT---GVTPKALYLMD   77 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChH--HHhhc---ccCcceEEEec
Confidence            4799999 9999999999999999999999985321 2233446777888888889742  22211   11111111100


Q ss_pred             cCc-----------cee--eeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc---CCeEEEcC
Q 009427          189 KGE-----------IWV--EDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EGKILSSH  251 (535)
Q Consensus       189 ~~~-----------~~~--~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~---~G~~i~a~  251 (535)
                      ...           ...  .......+++..|.+.|.+++.+. +++++.+++|++++.+++++.+++.   ++++++||
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~ad  157 (400)
T PRK06475         78 GRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAA  157 (400)
T ss_pred             CCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecC
Confidence            000           000  011123478899999999998764 7899999999999887788877763   33579999


Q ss_pred             eEEEccCCChHHHHHh
Q 009427          252 LIIDAMGNFSPVVKQA  267 (535)
Q Consensus       252 lVV~AdG~~S~v~~~~  267 (535)
                      +||+|||.+|.+|++.
T Consensus       158 lvIgADG~~S~vR~~~  173 (400)
T PRK06475        158 YLIACDGVWSMLRAKA  173 (400)
T ss_pred             EEEECCCccHhHHhhc
Confidence            9999999999999985

>PRK11445 putative oxidoreductase; Provisional

Probab=99.88  E-value=2.1e-21  Score=201.98  Aligned_cols=259  Identities=15%  Similarity=0.170  Sum_probs=156.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC---C--cccccccHHHHHHHHHcCCCChH-hHHHHHhhhcCCCc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG---R--EQEWNISRKELLELVESGILVED-DIDEATATKFNPNR  183 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~---~--~~~~~is~~~l~~L~~lGl~~~~-~~~~~~~~~~~~~~  183 (535)
                      |||+||| ||+|+++|+.|++. ++|+|+||.+...   .  .....++...++.|.++|+.... .+...  ..+.-..
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~--~~~~~~~   78 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP--QIFAVKT   78 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc--ccceeeE
Confidence            8999999 99999999999999 9999999986321   1  12233677777777777874211 11100  0010001


Q ss_pred             ccccccC-cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCe--EEEcCeEEEccCC
Q 009427          184 CGFEGKG-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGN  259 (535)
Q Consensus       184 ~~~~~~~-~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G~--~i~a~lVV~AdG~  259 (535)
                      +.+.... ..+  ....+.+++..|.+.|.+. .+.|++++.++.|++++.+++++.+.+ ++|+  +++|++||+|||.
T Consensus        79 ~~~~~~~~~~~--~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~  155 (351)
T PRK11445         79 IDLANSLTRNY--QRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGA  155 (351)
T ss_pred             ecccccchhhc--CCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCC
Confidence            1111000 001  1122458899999988875 467899999999999988888888775 4563  6999999999999


Q ss_pred             ChHHHHHhCCCCCCCCCceeEEEEEecCCCCCCC--h---HHHHHHHhhhccCccCC-----C-CCcc----ch-hcch-
Q 009427          260 FSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPK--L---EELLERYWDLMPEYQGV-----T-LDNL----EI-QRVI-  322 (535)
Q Consensus       260 ~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~--l---~~~~~~~~~~~P~~~~~-----~-~~~~----~~-~r~~-  322 (535)
                      +|.++++..+.... .....+...+....+ .+.  +   .+....|.|.+|.....     . ..+.    .. .+.+ 
T Consensus       156 ~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~W~~p~~~~~~~g~~~~~~~~~~~~~~l~~~l~  233 (351)
T PRK11445        156 NSMVRRHLYPDHQI-RKYVAIQQWFAEKHP-VPFYSCIFDNEITDCYSWSISKDGYFIFGGAYPMKDGRERFETLKEKLS  233 (351)
T ss_pred             CcHHhHHhcCCCch-hhEEEEEEEecCCCC-CCCcceEEeccCCCceEEEeCCCCcEEecccccccchHHHHHHHHHHHH
Confidence            99999987654111 111111111111111 110  0   11224566777764321     0 1110    00 0000 


Q ss_pred             -hc------------cccCCCCCCCCc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHH
Q 009427          323 -YG------------IFPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAV  377 (535)
Q Consensus       323 -~g------------~~P~~~~~pl~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al  377 (535)
                       ++            .++.....+... ..+|+++||||||+++|++|+|++.+++++..|++.|.+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~  302 (351)
T PRK11445        234 AFGFQFGKPVKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP  302 (351)
T ss_pred             hcccccccccccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc
Confidence             01            111000000111 14889999999999999999999999999999999987543

>PRK07538 hypothetical protein; Provisional

Probab=99.88  E-value=4.9e-21  Score=203.63  Aligned_cols=157  Identities=21%  Similarity=0.276  Sum_probs=106.0

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcCCC-c
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA-----TKFNPN-R  183 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~~~-~  183 (535)
                      ||+||| ||+|+++|+.|+++|++|+|+||.+.... ....++++..++.|.++|+.+  .+...-.     ..+++. .
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~--~l~~~~~~~~~~~~~~~~g~   79 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLD--ALDAIGIRTRELAYFNRHGQ   79 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHH--HHHhhCCCCcceEEEcCCCC
Confidence            899999 99999999999999999999999853221 122235566777777778732  2222110     011111 1


Q ss_pred             ccccccCcc-eeeeccccccCHHHHHHHHHHHHHh-CCC-EEEeCceEEEEEEeCCeEEEEEcCC-----eEEEcCeEEE
Q 009427          184 CGFEGKGEI-WVEDILNLGVSPAKLIEIVKKRFIS-LGG-VIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIID  255 (535)
Q Consensus       184 ~~~~~~~~~-~~~~~~~~~v~~~~l~~~L~~~a~~-~G~-~i~~~~~V~~i~~~~~gv~v~~~~G-----~~i~a~lVV~  255 (535)
                      ..+...... .......+.+++..|.+.|.+++.+ .|. .++.+++|++++.+++++++.+.++     ++++||+||+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIg  159 (413)
T PRK07538         80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIG  159 (413)
T ss_pred             EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEE
Confidence            101000000 0001112357899999999999876 464 6999999999988777776666442     4799999999


Q ss_pred             ccCCChHHHHHhCCC
Q 009427          256 AMGNFSPVVKQAFPA  270 (535)
Q Consensus       256 AdG~~S~v~~~~~p~  270 (535)
                      |||.+|.++++.+|.
T Consensus       160 ADG~~S~vR~~l~~~  174 (413)
T PRK07538        160 ADGIHSAVRAQLYPD  174 (413)
T ss_pred             CCCCCHHHhhhhcCC
Confidence            999999999998765

>PRK07236 hypothetical protein; Provisional

Probab=99.86  E-value=3.9e-20  Score=194.96  Aligned_cols=153  Identities=19%  Similarity=0.222  Sum_probs=104.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccc--ccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQE--WNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~--~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      ..||+||| |++|+++|+.|++.|++|+|+||.+.......  ..++...++.|.++|+.+..  +  ..  +......+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~--~--~~--~~~~~~~~   79 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA--D--IG--VPSRERIY   79 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc--c--cc--cCccceEE
Confidence            58999999 99999999999999999999999853221111  22466677778777874321  1  00  11001111


Q ss_pred             -cccCccee-eeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH
Q 009427          187 -EGKGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       187 -~~~~~~~~-~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~  264 (535)
                       ...+.... .......++...+.+.|.+.+  .+..++.+++|++++.+++++++++++|++++||+||+|||.+|.+|
T Consensus        80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR  157 (386)
T PRK07236         80 LDRDGRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVR  157 (386)
T ss_pred             EeCCCCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHH
Confidence             11111110 011111234566777776543  24679999999999988888999998898999999999999999999


Q ss_pred             HHhCCC
Q 009427          265 KQAFPA  270 (535)
Q Consensus       265 ~~~~p~  270 (535)
                      ++.++.
T Consensus       158 ~~l~~~  163 (386)
T PRK07236        158 AQLLPD  163 (386)
T ss_pred             HHhCCC
Confidence            998764

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.86  E-value=6.2e-20  Score=201.93  Aligned_cols=266  Identities=20%  Similarity=0.206  Sum_probs=154.9

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC--CCCc---ccccccHHHHHHHHHcCCCChHhHHHHHh----h
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL--KGRE---QEWNISRKELLELVESGILVEDDIDEATA----T  177 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~--~~~~---~~~~is~~~l~~L~~lGl~~~~~~~~~~~----~  177 (535)
                      .+.++|+||| |++|+++|+.|+++|++|+|+||++.  .+..   +...++...++.|..+|+...+++...-.    .
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~  158 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR  158 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence            3468999999 99999999999999999999999752  1111   12346777888888888633333222110    0


Q ss_pred             --hc-C--CCc--ccccccCcce-eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEE
Q 009427          178 --KF-N--PNR--CGFEGKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILS  249 (535)
Q Consensus       178 --~~-~--~~~--~~~~~~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~  249 (535)
                        .+ .  .+.  ..+....... ......+.+++..|.+.|.+.+..  ..++.+++|++++.+++++++.+.+|+++.
T Consensus       159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~--~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~  236 (668)
T PLN02927        159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE--DVIRNESNVVDFEDSGDKVTVVLENGQRYE  236 (668)
T ss_pred             eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC--CEEEcCCEEEEEEEeCCEEEEEECCCCEEE
Confidence              01 0  000  1110000000 000112457888999988665321  246788999999988889999998888899


Q ss_pred             cCeEEEccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCC-ChH---H-HH-------------H-HH-hhhc-cCc
Q 009427          250 SHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSP-KLE---E-LL-------------E-RY-WDLM-PEY  308 (535)
Q Consensus       250 a~lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~-~l~---~-~~-------------~-~~-~~~~-P~~  308 (535)
                      ||+||+|||++|.+|++.++... + ....+.. |+...+..+ ...   . .+             . .+ |+.+ +..
T Consensus       237 aDlVVGADG~~S~vR~~l~g~~~-~-~~sG~~~-~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p  313 (668)
T PLN02927        237 GDLLVGADGIWSKVRNNLFGRSE-A-TYSGYTC-YTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEP  313 (668)
T ss_pred             cCEEEECCCCCcHHHHHhcCCCC-C-cccceEE-EEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECC
Confidence            99999999999999999877532 1 1222221 211111000 000   0 00             0 01 1111 110


Q ss_pred             cC-CCCCccc----------hhcchhccc-----------cCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHH
Q 009427          309 QG-VTLDNLE----------IQRVIYGIF-----------PTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRH  365 (535)
Q Consensus       309 ~~-~~~~~~~----------~~r~~~g~~-----------P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~d  365 (535)
                      .. ....+..          |...+..++           +.+...+.+.+ .+|++|+|||||.++|+.|||.|.+++|
T Consensus       314 ~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieD  393 (668)
T PLN02927        314 AGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIED  393 (668)
T ss_pred             ccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHH
Confidence            00 0000000          000000000           11111122233 4899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 009427          366 LGRLSTGVYEAVR  378 (535)
Q Consensus       366 a~~La~~l~~al~  378 (535)
                      |..|+..|.++++
T Consensus       394 a~~La~~L~~~~~  406 (668)
T PLN02927        394 SFQLALELDEAWK  406 (668)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999987754

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.84  E-value=6.1e-20  Score=195.26  Aligned_cols=154  Identities=16%  Similarity=0.213  Sum_probs=104.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCC-CcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHh---hhcCCCccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATA---TKFNPNRCG  185 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~---~~~~~~~~~  185 (535)
                      +|+||| |++|+++|+.|+++| ++|+|+||.+.... .....+++..++.|..+|+.+  .++....   ..+......
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~--~~~~~~~~~~~~~~~~~~~   79 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGE--AYTQVADSTPAPWQDIWFE   79 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChh--HHHHHhcCCCccCcceeEE
Confidence            699999 999999999999998 59999999853221 111235666777777778732  2222111   000000011


Q ss_pred             ccc--cCcc----eeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          186 FEG--KGEI----WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       186 ~~~--~~~~----~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      +..  ....    +........+++..|.+.|.+.+.  ...++.+++|++++.+++++++.+++|.+++||+||+|||.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~  157 (414)
T TIGR03219        80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGI  157 (414)
T ss_pred             EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCc
Confidence            100  0000    000111124788889998887763  35678899999998888889998888888999999999999


Q ss_pred             ChHHHHHhCC
Q 009427          260 FSPVVKQAFP  269 (535)
Q Consensus       260 ~S~v~~~~~p  269 (535)
                      +|.+|++.++
T Consensus       158 ~S~vR~~l~~  167 (414)
T TIGR03219       158 KSALRDYVLQ  167 (414)
T ss_pred             cHHHHHHhcC
Confidence            9999998875

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.84  E-value=9.3e-20  Score=184.94  Aligned_cols=257  Identities=21%  Similarity=0.214  Sum_probs=142.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC--ccc-
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPN--RCG-  185 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~--~~~-  185 (535)
                      -+||||| |++|+++|..|+|+|++|+|+|+....+. ....++.....+.|...|+  .+.+..    ..-|.  ++. 
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~--~e~i~~----~gip~~~~v~~   76 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGL--KEQIRE----QGIPLGGRVLI   76 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHccc--HHHHHH----hcCcccceeee
Confidence            5899999 99999999999999999999999743322 2333444445566655564  222221    11111  111 


Q ss_pred             ccccCccee----eec--cccccCHHHHHHHHHHHHHhCCCEEEeCc------eEEEEEEeCCeEEEEEcCCeEEEcCeE
Q 009427          186 FEGKGEIWV----EDI--LNLGVSPAKLIEIVKKRFISLGGVIFEGY------SVSSICTYENAAVLLLAEGKILSSHLI  253 (535)
Q Consensus       186 ~~~~~~~~~----~~~--~~~~v~~~~l~~~L~~~a~~~G~~i~~~~------~V~~i~~~~~gv~v~~~~G~~i~a~lV  253 (535)
                      ....+..+.    .+.  .-..+.++.+++.++..+... ..++.+.      ....++......++++.+|.++++|++
T Consensus        77 ~~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~-~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dll  155 (420)
T KOG2614|consen   77 HGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPT-GTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLL  155 (420)
T ss_pred             ecCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCC-CeeecccccccccccceeeecccccceecCCCcEEEeeEE
Confidence            111111111    000  012245666777777776664 3444443      444454444556678888999999999


Q ss_pred             EEccCCChHHHHHhCCCCCCCCCceeEEEEEecCC--CC-CCC---hHHHHHHH--hhhccCcc-----------CC---
Q 009427          254 IDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQ--AG-SPK---LEELLERY--WDLMPEYQ-----------GV---  311 (535)
Q Consensus       254 V~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~--~~-~~~---l~~~~~~~--~~~~P~~~-----------~~---  311 (535)
                      |+|||++|.+++++....  |  ...+...|+...  +. .+.   .-.+.+.+  .|..|...           .+   
T Consensus       156 igCDGa~S~Vr~~l~~~~--p--~~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~  231 (420)
T KOG2614|consen  156 IGCDGAYSKVRKWLGFKE--P--RYDGSQAYRGLGFIPNGIPFGKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDF  231 (420)
T ss_pred             EEcCchHHHHHHHhcccC--C--cceeEEEEeeeeeccCCCCcccceecccCCeEEEcccCCceEEEEEeecCCcccccc
Confidence            999999999999976541  1  222222333210  00 000   00011111  11111110           00   


Q ss_pred             -CCCccchhc----chh--------ccc-----------cCCCCCCCC-----ccCCCeeEeecCCCcccccccccchHH
Q 009427          312 -TLDNLEIQR----VIY--------GIF-----------PTYRDSPLP-----AAFNRILQFGDASGIQSPVSFGGFGSL  362 (535)
Q Consensus       312 -~~~~~~~~r----~~~--------g~~-----------P~~~~~pl~-----~~~~rvlliGDAA~~~~P~~G~Gi~~a  362 (535)
                       ..+++...+    .+.        ..+           |-....|.+     +..++++|+|||||.|.|+.|||+|+|
T Consensus       232 ~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a  311 (420)
T KOG2614|consen  232 APFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCA  311 (420)
T ss_pred             cCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccch
Confidence             011111100    000        000           111112221     224789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 009427          363 TRHLGRLSTGVYEAVR  378 (535)
Q Consensus       363 l~da~~La~~l~~al~  378 (535)
                      ++|+..|+++|+++..
T Consensus       312 ~ED~~VLa~~L~~~~~  327 (420)
T KOG2614|consen  312 FEDCVVLAECLDEAIN  327 (420)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999999875

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.84  E-value=2.6e-19  Score=187.25  Aligned_cols=310  Identities=15%  Similarity=0.166  Sum_probs=168.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          112 DVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ||+||| |++|+++|+.|++.  |++|+|+|+.+..++++.|......+...   +   ...++..+.+.|....+.+..
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~---~---~~~~~~~v~~~W~~~~v~~~~   74 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDA---Q---HAWLADLVQTDWPGYEVRFPK   74 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchh---h---hhhhhhhheEeCCCCEEECcc
Confidence            899999 99999999999997  99999999987555566665332222211   0   112344455555433232211


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHH---
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK---  265 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~---  265 (535)
                      ....+  +.....+++..|.+.+.+++.. +  ++.+++|+++  +++++++  ++|++++|++||+|+|..|+...   
T Consensus        75 ~~~~l--~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~~  145 (370)
T TIGR01789        75 YRRKL--KTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSAHLKGG  145 (370)
T ss_pred             hhhhc--CCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCccccce
Confidence            11111  1234568889999999876643 3  6778899988  4566555  57889999999999998874221   


Q ss_pred             -HhCCC----CCCCCCce-eEEEEEecCCCCCCChHHHHHHHhhhccCccCC----------------------------
Q 009427          266 -QAFPA----GSGPLDRT-TYMFTYIDPQAGSPKLEELLERYWDLMPEYQGV----------------------------  311 (535)
Q Consensus       266 -~~~p~----~~~~~~~~-~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~----------------------------  311 (535)
                       |.|-+    ...|.+.. ..++.|+......       ..|...+|...+.                            
T Consensus       146 ~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g-------~~F~Y~lP~~~~~~lvE~T~~s~~~~l~~~~l~~~l~~~~~  218 (370)
T TIGR01789       146 FQVFLGREMRLQEPHGLENPIIMDATVDQLAG-------YRFVYVLPLGSHDLLIEDTYYADDPLLDRNALSQRIDQYAR  218 (370)
T ss_pred             eeEEEEEEEEEcCCCCCCccEEEeeeccCCCC-------ceEEEECcCCCCeEEEEEEeccCCCCCCHHHHHHHHHHHHH
Confidence             11000    00000000 0111111000000       0112222222110                            


Q ss_pred             --CCCccchhcchhccccCCCCCCCC---ccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCCCChhc
Q 009427          312 --TLDNLEIQRVIYGIFPTYRDSPLP---AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYS  386 (535)
Q Consensus       312 --~~~~~~~~r~~~g~~P~~~~~pl~---~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~~~~~  386 (535)
                        ......+.+...|.+|.....++.   ...+++++||||||++||.+|||++.+++++..|++.+.  ++...+. ..
T Consensus       219 ~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~--~~~~~~~-~~  295 (370)
T TIGR01789       219 ANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD--LSSEQLA-AF  295 (370)
T ss_pred             HhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccC--cCccchh-hh
Confidence              000011112233667764321222   124669999999999999999999999999988887653  0110111 11


Q ss_pred             hhhhCCCCch-hhh--hHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhhcCcchHHHHH
Q 009427          387 LSLLNPYMPN-LSA--SWLFQRAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTL  456 (535)
Q Consensus       387 l~~l~~y~~~-~~~--~~~~~~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~~~~~~l~~~~  456 (535)
                      +   ..|... ...  ...|-..|-+...   .|.    ....+|..|.++|++....|+....++.+..+++
T Consensus       296 ~---~~~~~~~~~~~~~~~~~~~~ll~~~---~~~----~~~~~f~~~f~l~~~~~~rFl~~~~~~~~~~~i~  358 (370)
T TIGR01789       296 I---DSRARRHWSKTGYYRLLNRMLFFAA---KPE----KRVRVFQRFYGLREGLIERFYAARSNTFDKLRVL  358 (370)
T ss_pred             h---hHHHHHHHHHhHHHHHHHHHHhccC---Cch----hHHHHHHHHhCCCHHHHHHHHhcCCCHHHHHHHH
Confidence            1   122211 111  1111111212111   122    2356677777789999999999988887776654

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=99.73  E-value=1.7e-17  Score=162.66  Aligned_cols=155  Identities=16%  Similarity=0.220  Sum_probs=109.4

Q ss_pred             cccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCCCChhchhhhCCCCchhhhhHHHH
Q 009427          325 IFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQ  404 (535)
Q Consensus       325 ~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~~~~~~~  404 (535)
                      .+|.....+.+...++++++|||+++.||+||+||++|+.|+..|++.|...  .+..+.+++..            .++
T Consensus       116 sMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~--~dl~d~~~v~~------------~l~  181 (276)
T PF08491_consen  116 SMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPI--PDLSDTKAVLE------------ALK  181 (276)
T ss_pred             eecccccCCCCCCCCCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhh--cCcccHHHHHH------------HHH
Confidence            3565554444445699999999999999999999999999999999988765  12211211110            111


Q ss_pred             HhhhhccCCCCChHHHHHHHHHHHHhhhhCCchhhhhHHhhhcCcchHHHHHHHHHhhCCCChHHHHhhcChhhHhHhHH
Q 009427          405 RAMSAKQQSDVSPDFINELLYVNFQCMQKLGDPVLRPFLQDVIKFGPLAKTLGLVMLNKPQIIPSIFKQVGIPVLVDWSG  484 (535)
Q Consensus       405 ~~m~~~~~~~~~~~~i~~ll~~~f~~l~~l~~~~~~~f~~~~~~~~~l~~~~~~~~~~~P~~~~~~l~~~~~~~~~~~~~  484 (535)
                      ++.   ..++.....||.+..++|..|.+-++ ..+.+.+.|+.+..+++.    +...|   ..+|+++.++| +.++.
T Consensus       182 ~f~---~~Rk~~~s~iNiLA~aLY~lF~a~~~-~l~~Lr~gcf~Yf~~GG~----~~~gp---v~LLsgl~p~P-~~L~~  249 (276)
T PF08491_consen  182 KFH---WKRKPLSSVINILAQALYSLFAADDD-YLKALRQGCFKYFQLGGE----CVSGP---VALLSGLNPRP-LVLFY  249 (276)
T ss_pred             HHH---HHHccchHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHcCCC----CCcch---HHHhccCCCCc-HHHHH
Confidence            111   12233456899999999999887544 444666777777554322    34566   68889999998 59999


Q ss_pred             HHHHHHHHHHHHhhhhhhHHhhhh
Q 009427          485 HFFMLGYYTLLSTFADPVIRSLLN  508 (535)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~  508 (535)
                      |||++++|++...+..   +||+.
T Consensus       250 Hff~Va~~~i~~~~~~---~p~~~  270 (276)
T PF08491_consen  250 HFFAVAFYAIYLNLKP---RPWYG  270 (276)
T ss_pred             HHHHHHHHHHHHHccc---CCccc
Confidence            9999999999999985   67665

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.68  E-value=1.1e-15  Score=174.11  Aligned_cols=140  Identities=20%  Similarity=0.190  Sum_probs=90.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCC-Ccccc
Q 009427          112 DVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCGF  186 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~-~~~~~  186 (535)
                      +|+||| ||+|+++|+.|+++  |++|+|+||++..... ....++...++.|...+   .. +...+...+.. ....+
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~---~~-~~~~~~~~~~~~~~~~~   77 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAAD---PV-SAAAIGDAFNHWDDIDV   77 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcC---HH-HHHHHHHhcccCCceEE
Confidence            699999 99999999999998  8999999998642211 11125556666663322   11 11112111111 11111


Q ss_pred             cccCcceee-eccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHH
Q 009427          187 EGKGEIWVE-DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK  265 (535)
Q Consensus       187 ~~~~~~~~~-~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~  265 (535)
                      ...+..... ......+++..|.+.|.+++.+.|++++++++|+++..            ...++|+||+|||.+|.+|+
T Consensus        78 ~~~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S~vR~  145 (765)
T PRK08255         78 HFKGRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA------------LAADADLVIASDGLNSRIRT  145 (765)
T ss_pred             EECCEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------hhcCCCEEEEcCCCCHHHHH
Confidence            111111111 11123578999999999999999999999998877521            12579999999999999988


Q ss_pred             Hh
Q 009427          266 QA  267 (535)
Q Consensus       266 ~~  267 (535)
                      +.
T Consensus       146 ~~  147 (765)
T PRK08255        146 RY  147 (765)
T ss_pred             HH
Confidence            63

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.64  E-value=3e-16  Score=168.21  Aligned_cols=174  Identities=16%  Similarity=0.188  Sum_probs=95.1

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE--EEEEcCCeEEEcCeEEEccCCChHHHHHhCCCC--CCC
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAG--SGP  274 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv--~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p~~--~~~  274 (535)
                      .+.+|+..|.+.|++.|.+.|++++++ +|+++..++++.  .|++++|++++||+||||+|..|.+.++.+...  +..
T Consensus       148 ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~  226 (454)
T PF04820_consen  148 AYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWS  226 (454)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEET
T ss_pred             eEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCcccc
Confidence            356899999999999999999999987 488887777764  366778999999999999998887766532210  000


Q ss_pred             CCc---eeEEEEEecCCCCCC-ChHH-HHHHHhhhccCccCCC---------CCccchhcchh---c----ccc----CC
Q 009427          275 LDR---TTYMFTYIDPQAGSP-KLEE-LLERYWDLMPEYQGVT---------LDNLEIQRVIY---G----IFP----TY  329 (535)
Q Consensus       275 ~~~---~~~~~~y~~~~~~~~-~l~~-~~~~~~~~~P~~~~~~---------~~~~~~~r~~~---g----~~P----~~  329 (535)
                      ...   ..+...........+ .... .-.+++|.+|...+..         .++....+.+.   +    ..|    ..
T Consensus       227 ~~L~~d~av~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~G~V~s~~~~s~~~A~~~l~~~l~~~~~~~~~~i~~~  306 (454)
T PF04820_consen  227 DWLPNDRAVAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGSGYVYSSDFISDDEAEAELLAYLGGSPEAEPRHIRFR  306 (454)
T ss_dssp             TTCEEEEEEEEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEEEEEEETTTSHHHHHHHHHHHHHTCHCTTSCEEEE-S
T ss_pred             ccccccEEEEEecCcCCCCCCceeEEecCCceEEEccCCCcceEEEEeccccCCHHHHHHHHHHhcchhhhcchhhhccc
Confidence            000   011111111111111 1111 1246678877654210         00000000000   0    011    00


Q ss_pred             CCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHH
Q 009427          330 RDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGV  373 (535)
Q Consensus       330 ~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l  373 (535)
                      .....+.+.+|+++|||||++++|+.+.|+..++..+..+++.+
T Consensus       307 ~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l  350 (454)
T PF04820_consen  307 SGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEAL  350 (454)
T ss_dssp             -EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTH
T ss_pred             ccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhc
Confidence            00011233599999999999999999999999988555554443

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.58  E-value=4.9e-14  Score=142.56  Aligned_cols=153  Identities=19%  Similarity=0.181  Sum_probs=92.0

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHC----CCcEEEEcccCC---CCC-------cccccccHHHHHHHHHcCCCChHhHHH
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFK----GLRVAIVERNTL---KGR-------EQEWNISRKELLELVESGILVEDDIDE  173 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~----G~~V~liEr~~~---~~~-------~~~~~is~~~l~~L~~lGl~~~~~~~~  173 (535)
                      ..||||||| ||+|+++|..|...    -+||+|+|-...   ...       ++...++...+..+...|.++  .+..
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd--~i~~  112 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWD--HIFH  112 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHH--Hhhh
Confidence            379999999 99999999999865    579999998722   111       122225666666665557643  1111


Q ss_pred             HHhhhcCCC---------cccccccCcceeeeccccccCHHHHHHHHHH-HH--HhCCCEEEeCceEEEEEEe------C
Q 009427          174 ATATKFNPN---------RCGFEGKGEIWVEDILNLGVSPAKLIEIVKK-RF--ISLGGVIFEGYSVSSICTY------E  235 (535)
Q Consensus       174 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~-~a--~~~G~~i~~~~~V~~i~~~------~  235 (535)
                      .....|+..         .+.|..  +-...+ ..+.+....+.-.|.. .+  +...+++.+.+++..+..-      +
T Consensus       113 ~R~~~~~~~~v~Ds~s~a~I~~~~--d~~~~d-~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~  189 (481)
T KOG3855|consen  113 DRYQKFSRMLVWDSCSAALILFDH--DNVGID-MAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKND  189 (481)
T ss_pred             hccccccceeeecccchhhhhhcc--cccccc-ceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCC
Confidence            111111110         111111  101111 1234445555555553 22  2346889999888887652      1


Q ss_pred             C--eEEEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427          236 N--AAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       236 ~--gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      +  ...+++.||..+.+|++|+|||.+|.+++.
T Consensus       190 n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~  222 (481)
T KOG3855|consen  190 NGMWFHITLTDGINFATDLLIGADGFNSVVRKA  222 (481)
T ss_pred             CcceEEEEeccCceeeeceeeccccccchhhhh
Confidence            2  245677789999999999999999999876

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.45  E-value=3.5e-12  Score=128.89  Aligned_cols=296  Identities=19%  Similarity=0.211  Sum_probs=170.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHC------CCcEEEEcccCCCCCcccc-c-ccHHHHHHHHHcCCCChHhHHHHHhhhc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFK------GLRVAIVERNTLKGREQEW-N-ISRKELLELVESGILVEDDIDEATATKF  179 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~------G~~V~liEr~~~~~~~~~~-~-is~~~l~~L~~lGl~~~~~~~~~~~~~~  179 (535)
                      +++||+||| ||+|+++|+.|.+.      -+||+|+||....+++... + +.+..+++|.    .++.+--..+....
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~----P~wke~~apl~t~v  150 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELL----PDWKEDGAPLNTPV  150 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhC----cchhhcCCcccccc
Confidence            479999999 99999999988653      5799999998655543321 1 3334444441    11111000000000


Q ss_pred             CCCccccccc-------CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEE--Ec------C
Q 009427          180 NPNRCGFEGK-------GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL--LA------E  244 (535)
Q Consensus       180 ~~~~~~~~~~-------~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~--~~------~  244 (535)
                      ..+.+.|...       -..-..+-.+|.+.-..+.++|.++|++.|++|+-+..+.++..++|+.+..  ++      +
T Consensus       151 T~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~  230 (621)
T KOG2415|consen  151 TSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKD  230 (621)
T ss_pred             cccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCC
Confidence            0011111110       0001122346778888999999999999999999998888887777764432  21      1


Q ss_pred             ---------CeEEEcCeEEEccCCChHHHHHh---CCCCCCCCCceeEEEEEecCCCC-----CCC-hHH---------H
Q 009427          245 ---------GKILSSHLIIDAMGNFSPVVKQA---FPAGSGPLDRTTYMFTYIDPQAG-----SPK-LEE---------L  297 (535)
Q Consensus       245 ---------G~~i~a~lVV~AdG~~S~v~~~~---~p~~~~~~~~~~~~~~y~~~~~~-----~~~-l~~---------~  297 (535)
                               |.++.|+..|.|.|++..+.+|+   |.-+.+ .+..+|-+...+++.-     +|. ++.         .
T Consensus       231 G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n-~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl~~~t  309 (621)
T KOG2415|consen  231 GAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLREN-CEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPLDNDT  309 (621)
T ss_pred             CCccccccccceecceeEEEeccccchhHHHHHHHhCcccC-CCcceeccccceeEecChhhcCCcceeeeccCcccCCc
Confidence                     34799999999999998888774   333222 2345555544332211     111 010         1


Q ss_pred             H-HHHhhhccCc------------cCCCC---Cccchh-------cch-------hcc--c-cCCCCCCC-CccCCCeeE
Q 009427          298 L-ERYWDLMPEY------------QGVTL---DNLEIQ-------RVI-------YGI--F-PTYRDSPL-PAAFNRILQ  343 (535)
Q Consensus       298 ~-~~~~~~~P~~------------~~~~~---~~~~~~-------r~~-------~g~--~-P~~~~~pl-~~~~~rvll  343 (535)
                      | +.|+..+-+.            .+..+   .+++..       ..+       +|.  + ....+ .+ +..+++=++
T Consensus       310 YGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQ-siPkl~FPGG~l  388 (621)
T KOG2415|consen  310 YGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQ-SIPKLVFPGGAL  388 (621)
T ss_pred             cCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcc-cCcccccCCceE
Confidence            1 1122222110            11000   001000       000       000  0 01111 12 234678889


Q ss_pred             eecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCCCChhchhhhCCCCchhhhhHHHHHhhhhc
Q 009427          344 FGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQRAMSAK  410 (535)
Q Consensus       344 iGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~~~~~l~~l~~y~~~~~~~~~~~~~m~~~  410 (535)
                      ||-+|++++-----|-.+||.+...+|+.|-+++.....+.-.......|+.|++.+|.+....+++
T Consensus       389 iGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvR  455 (621)
T KOG2415|consen  389 IGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVR  455 (621)
T ss_pred             eecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhh
Confidence            9999999998888999999999999999999999654322211222457999999999987766654

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.41  E-value=5.2e-12  Score=125.54  Aligned_cols=215  Identities=19%  Similarity=0.240  Sum_probs=123.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++||+||| ||+|+++|+.|++.|++|+|+||....++. .|.-. ..+..+   .+  .++....+ ..+.   +.+..
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg-~~~gg-~~~~~~---~v--~~~~~~~l-~~~g---v~~~~   93 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG-MWGGG-MLFNKI---VV--QEEADEIL-DEFG---IRYKE   93 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccCc-cccccc---cc--hHHHHHHH-HHCC---CCcee
Confidence            58999999 999999999999999999999998643321 11100 000000   00  00000111 1111   11110


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eE---EEEE----c-----CCeEEEcCeEEE
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLL----A-----EGKILSSHLIID  255 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv---~v~~----~-----~G~~i~a~lVV~  255 (535)
                      ...      ..+.+|+..+...|.+++.+.|++++.+++|+++..+++ .+   ++..    .     +..+++|+.||+
T Consensus        94 ~~~------g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~  167 (257)
T PRK04176         94 VED------GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD  167 (257)
T ss_pred             ecC------cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence            000      123467889999999999999999999999999987665 22   2211    0     225799999999


Q ss_pred             ccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhccccCCCCCCCC
Q 009427          256 AMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLP  335 (535)
Q Consensus       256 AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl~  335 (535)
                      |+|+++.+.+........   ...      ......+ +        |.     . ..++.....             ..
T Consensus       168 ATG~~a~v~~~l~~~~~~---~~~------~~~g~~~-~--------~~-----~-~~e~~v~~~-------------t~  210 (257)
T PRK04176        168 ATGHDAEVVSVLARKGPE---LGI------EVPGEKS-M--------WA-----E-RGEKLVVEN-------------TG  210 (257)
T ss_pred             EeCCCcHHHHHHHHHcCC---ccc------ccCCccc-c--------cc-----C-chHHHHHhc-------------CC
Confidence            999999988764211000   000      0000000 0        00     0 000000000             01


Q ss_pred             ccCCCeeEeecCCCccc--ccccccchHHHHHHHHHHHHHHHHHh
Q 009427          336 AAFNRILQFGDASGIQS--PVSFGGFGSLTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       336 ~~~~rvlliGDAA~~~~--P~~G~Gi~~al~da~~La~~l~~al~  378 (535)
                      ...+++++.|-|+..++  |=.|-=|+.++.+..+.|+.|.+.|+
T Consensus       211 ~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~  255 (257)
T PRK04176        211 EVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLK  255 (257)
T ss_pred             eEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhh
Confidence            11467888999887665  34555566678888889998887765

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.38  E-value=1.2e-11  Score=122.76  Aligned_cols=140  Identities=24%  Similarity=0.413  Sum_probs=89.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++||+||| ||+|+++|+.|+++|++|+||||+...+.. .|.-. ..+..+   .+ . ......+ ..+.   +.+..
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg-~~~gg-~~~~~~---~~-~-~~~~~~l-~~~g---i~~~~   89 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG-SWGGG-MLFSKI---VV-E-KPAHEIL-DEFG---IRYED   89 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc-ccCCC-cceecc---cc-c-chHHHHH-HHCC---CCeee
Confidence            69999999 999999999999999999999998644322 22110 000000   00 0 0000111 1110   11111


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EE-EEEc-----------CCeEEEcCeEE
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AV-LLLA-----------EGKILSSHLII  254 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v~-v~~~-----------~G~~i~a~lVV  254 (535)
                      .+..+      +..++..+.+.|.+++.+.|++++.+++|+++..++++  +. |.+.           +..+++|++||
T Consensus        90 ~~~g~------~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VV  163 (254)
T TIGR00292        90 EGDGY------VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVV  163 (254)
T ss_pred             ccCce------EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEE
Confidence            11111      22466788999999999999999999999999877662  22 2221           12479999999


Q ss_pred             EccCCChHHHHH
Q 009427          255 DAMGNFSPVVKQ  266 (535)
Q Consensus       255 ~AdG~~S~v~~~  266 (535)
                      +|||+.+.+.+.
T Consensus       164 dATG~~a~v~~~  175 (254)
T TIGR00292       164 DATGHDAEIVAV  175 (254)
T ss_pred             EeecCCchHHHH
Confidence            999999887665

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.37  E-value=7.3e-12  Score=127.64  Aligned_cols=145  Identities=22%  Similarity=0.308  Sum_probs=96.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc------ccccccHH-HHHHHHHcCCCC-hHhHHHHHhhhcC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRK-ELLELVESGILV-EDDIDEATATKFN  180 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~------~~~~is~~-~l~~L~~lGl~~-~~~~~~~~~~~~~  180 (535)
                      .+|||||| ||+|+++|..++++|.+|+|||+++-.++.      ...|+... ..+.+... ... ...+...+ ..|.
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~-~p~~~~fl~sal-~~ft   80 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSR-NPGNGHFLKSAL-ARFT   80 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHh-CCCcchHHHHHH-HhCC
Confidence            68999999 999999999999999999999998533321      11232211 12222110 000 01111111 2232


Q ss_pred             CC-cccc--------cc--cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEE
Q 009427          181 PN-RCGF--------EG--KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILS  249 (535)
Q Consensus       181 ~~-~~~~--------~~--~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~  249 (535)
                      +. .+.|        ..  .+..+.     -.-....+++.|+.++++.|++++.+++|.+++.++++..+.+++|.+++
T Consensus        81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp-----~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~  155 (408)
T COG2081          81 PEDFIDWVEGLGIALKEEDLGRMFP-----DSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVK  155 (408)
T ss_pred             HHHHHHHHHhcCCeeEEccCceecC-----CccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEE
Confidence            21 1111        11  111111     11346789999999999999999999999999988878899998888899


Q ss_pred             cCeEEEccCCCh
Q 009427          250 SHLIIDAMGNFS  261 (535)
Q Consensus       250 a~lVV~AdG~~S  261 (535)
                      ||.+|+|+|..|
T Consensus       156 ~d~lilAtGG~S  167 (408)
T COG2081         156 CDSLILATGGKS  167 (408)
T ss_pred             ccEEEEecCCcC
Confidence            999999999776

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.35  E-value=7.2e-12  Score=118.18  Aligned_cols=129  Identities=26%  Similarity=0.403  Sum_probs=81.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---------ccHHHHHHHHHcCCCChHhHHHHHhhhc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATATKF  179 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---------is~~~l~~L~~lGl~~~~~~~~~~~~~~  179 (535)
                      ++||+||| ||+|+++|+.||+.|+||+|+|++...++ ..|.         +.......|.++|+            .|
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG-g~~~Gg~lf~~iVVq~~a~~iL~elgi------------~y   83 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG-GMWGGGMLFNKIVVQEEADEILDELGI------------PY   83 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT-TTTS-CTT---EEEETTTHHHHHHHT---------------
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc-cccccccccchhhhhhhHHHHHHhCCc------------ee
Confidence            69999999 99999999999999999999999864432 1221         11111111111121            11


Q ss_pred             CCCcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeE---EEEEc---------CCe
Q 009427          180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAA---VLLLA---------EGK  246 (535)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~gv---~v~~~---------~G~  246 (535)
                      .       ..++.      .+..|+..+...|..++.++|++++..+.|+++...+ +.+   ++...         |--
T Consensus        84 ~-------~~~~g------~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl  150 (230)
T PF01946_consen   84 E-------EYGDG------YYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPL  150 (230)
T ss_dssp             E-------E-SSE------EEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-E
T ss_pred             E-------EeCCe------EEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcc
Confidence            1       01111      2346788888999999999999999999999998887 333   23221         224


Q ss_pred             EEEcCeEEEccCCChHHH
Q 009427          247 ILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       247 ~i~a~lVV~AdG~~S~v~  264 (535)
                      .++|++||+|||+-+.+.
T Consensus       151 ~i~ak~ViDaTGHda~v~  168 (230)
T PF01946_consen  151 TIRAKVVIDATGHDAEVV  168 (230)
T ss_dssp             EEEESEEEE---SSSSST
T ss_pred             eEEEeEEEeCCCCchHHH
Confidence            799999999999877543

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.35  E-value=1.7e-11  Score=114.90  Aligned_cols=140  Identities=26%  Similarity=0.383  Sum_probs=90.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      +.||+||| ||+||++|+.||++|+||+|+||+...++ ..|.-. ..+..+    . -.++.+. +..++.   +.+..
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG-G~w~GG-mlf~~i----V-v~~~a~~-iL~e~g---I~ye~   98 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG-GIWGGG-MLFNKI----V-VREEADE-ILDEFG---IRYEE   98 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC-cccccc-ccccee----e-ecchHHH-HHHHhC---Cccee
Confidence            47999999 99999999999999999999999864332 223200 000000    0 0111111 111111   11111


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eE---EEEEc---------CCeEEEcCeEEE
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AA---VLLLA---------EGKILSSHLIID  255 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv---~v~~~---------~G~~i~a~lVV~  255 (535)
                      .++.      .+..|+..+...|..++.++|++|+..+.|+++...++ ++   ++...         |--.++|++||+
T Consensus        99 ~e~g------~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvD  172 (262)
T COG1635          99 EEDG------YYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVD  172 (262)
T ss_pred             cCCc------eEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEe
Confidence            1111      23457788889999999999999999999999988777 33   22211         234699999999


Q ss_pred             ccCCChHHHHH
Q 009427          256 AMGNFSPVVKQ  266 (535)
Q Consensus       256 AdG~~S~v~~~  266 (535)
                      |||+-..+...
T Consensus       173 aTGHda~v~~~  183 (262)
T COG1635         173 ATGHDAEVVSF  183 (262)
T ss_pred             CCCCchHHHHH
Confidence            99988776654

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.34  E-value=2e-11  Score=126.01  Aligned_cols=68  Identities=21%  Similarity=0.267  Sum_probs=57.8

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChHHHHHh
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVKQA  267 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~v~~~~  267 (535)
                      ...+|+..+.+.|.+.+++.|++++.+++|+++..++++++ |.+++|+ ++||.||+|+|.++......
T Consensus       141 ~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~  209 (358)
T PF01266_consen  141 GGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPL  209 (358)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHT
T ss_pred             cccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeec
Confidence            34489999999999999999999999999999999999988 8998886 99999999999998775543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.27  E-value=6.2e-11  Score=125.14  Aligned_cols=139  Identities=24%  Similarity=0.309  Sum_probs=76.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC------cccccccH-----HH-----------HH-HHHHcCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR------EQEWNISR-----KE-----------LL-ELVESGIL  166 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~------~~~~~is~-----~~-----------l~-~L~~lGl~  166 (535)
                      |||+||| |++|++||+.|++.|.+|+|+||+...+.      +...|++.     .+           +. .+..   +
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~---f   77 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKR---F   77 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHH---S
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhc---C
Confidence            7999999 99999999999999999999999943221      01111110     00           00 0000   0


Q ss_pred             ChHhHHHHHhhhcCCCccccc--ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEc
Q 009427          167 VEDDIDEATATKFNPNRCGFE--GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLA  243 (535)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~  243 (535)
                      +.+++.....    ...+.+.  ..+..|.     ..-....+++.|.+++.+.|++++.+++|++++.++++ +.|+++
T Consensus        78 ~~~d~~~ff~----~~Gv~~~~~~~gr~fP-----~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~  148 (409)
T PF03486_consen   78 SPEDLIAFFE----ELGVPTKIEEDGRVFP-----KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTK  148 (409)
T ss_dssp             -HHHHHHHHH----HTT--EEE-STTEEEE-----TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEET
T ss_pred             CHHHHHHHHH----hcCCeEEEcCCCEECC-----CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeecc
Confidence            1111111111    0001110  1111221     11246788899999999999999999999999988887 778876


Q ss_pred             CCeEEEcCeEEEccCCCh
Q 009427          244 EGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       244 ~G~~i~a~lVV~AdG~~S  261 (535)
                      ++.++.||.||.|+|..|
T Consensus       149 ~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  149 NGGEYEADAVILATGGKS  166 (409)
T ss_dssp             TTEEEEESEEEE----SS
T ss_pred             CcccccCCEEEEecCCCC
Confidence            778999999999999766

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.23  E-value=1.5e-10  Score=121.38  Aligned_cols=157  Identities=22%  Similarity=0.263  Sum_probs=101.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCccccc-------------------c---c-HHHHHHHHHc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWN-------------------I---S-RKELLELVES  163 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~-------------------i---s-~~~l~~L~~l  163 (535)
                      ++||+||| |+.|+++|+.|++.+  ++|+||||....+..++.+                   +   . ....+...++
T Consensus         3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~   82 (429)
T COG0579           3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL   82 (429)
T ss_pred             ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence            69999999 999999999999998  9999999985433222111                   0   0 0111111222


Q ss_pred             CC-----------CChHhHHHHHhhhc---CCC--c-ccccc---------------cCcceeeeccccccCHHHHHHHH
Q 009427          164 GI-----------LVEDDIDEATATKF---NPN--R-CGFEG---------------KGEIWVEDILNLGVSPAKLIEIV  211 (535)
Q Consensus       164 Gl-----------~~~~~~~~~~~~~~---~~~--~-~~~~~---------------~~~~~~~~~~~~~v~~~~l~~~L  211 (535)
                      +.           +++++++.. ...|   ...  . ..+..               .+..+.+  ....||+..+...|
T Consensus        83 ~~~f~~~g~l~vA~~e~e~~~L-~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p--~~giV~~~~~t~~l  159 (429)
T COG0579          83 GIPFINCGKLSVATGEEEVERL-EKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVP--SGGIVDPGELTRAL  159 (429)
T ss_pred             CCcccccCeEEEEEChHHHHHH-HHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcC--CCceEcHHHHHHHH
Confidence            21           112222211 1111   000  0 11100               0111221  23458999999999


Q ss_pred             HHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeE-EEcCeEEEccCCChHHHHHhCC
Q 009427          212 KKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGNFSPVVKQAFP  269 (535)
Q Consensus       212 ~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~-i~a~lVV~AdG~~S~v~~~~~p  269 (535)
                      .+.+.++|++++.+++|++|+.++|+ ..+.+.+|++ ++|+.||.|.|.+|.-..+...
T Consensus       160 ~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g  219 (429)
T COG0579         160 AEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAG  219 (429)
T ss_pred             HHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhC
Confidence            99999999999999999999998884 5566777765 9999999999999877666433

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.23  E-value=2.1e-10  Score=120.48  Aligned_cols=67  Identities=12%  Similarity=0.141  Sum_probs=56.2

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      +..+++..+.+.|.+.+.+.|++++.+++|++++.+++++.|.++++ ++.|+.||+|+|.++....+
T Consensus       139 ~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~  205 (380)
T TIGR01377       139 GGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLS  205 (380)
T ss_pred             CcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhh
Confidence            45589999999999999999999999999999987777777777555 79999999999988654433

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.23  E-value=1.9e-10  Score=120.60  Aligned_cols=64  Identities=13%  Similarity=0.122  Sum_probs=55.6

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~  264 (535)
                      ..+++.++...+.+.+.+.|++++++++|++++.+++++.|.+++| ++.||.||.|+|.++...
T Consensus       144 g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l  207 (376)
T PRK11259        144 GFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDL  207 (376)
T ss_pred             CEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhh
Confidence            3578999999999999999999999999999988777888887666 799999999999987543

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.22  E-value=2.2e-10  Score=123.66  Aligned_cols=62  Identities=18%  Similarity=0.309  Sum_probs=53.0

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                      ...+|+.++.+.|.+.+.+.|++|+++++|++++. ++.+.|++.+| +++|+.||.|+|+++.
T Consensus       177 ~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       177 AASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA  238 (460)
T ss_pred             CeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence            45689999999999999999999999999999964 45566777555 6999999999999875

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.19  E-value=3.6e-10  Score=119.48  Aligned_cols=69  Identities=19%  Similarity=0.170  Sum_probs=58.6

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHHhCC
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFP  269 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p  269 (535)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|.+.+| ++.|+.||.|+|.+|....+.++
T Consensus       144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g  212 (393)
T PRK11728        144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAG  212 (393)
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhC
Confidence            4578999999999999999999999999999987777777777655 79999999999999976555443

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.17  E-value=3.9e-10  Score=123.15  Aligned_cols=65  Identities=17%  Similarity=0.187  Sum_probs=54.4

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---C--eEEEcCeEEEccCCChHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~---G--~~i~a~lVV~AdG~~S~v~  264 (535)
                      ..+|+.++...+.+.+.+.|++++.+++|+++..+++.+.+++.+   |  .+++|+.||.|+|.|+.-.
T Consensus       150 g~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l  219 (508)
T PRK12266        150 CWVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQF  219 (508)
T ss_pred             cccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHH
Confidence            457899999999999999999999999999998776666666543   4  3699999999999998654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.17  E-value=4.1e-10  Score=122.89  Aligned_cols=68  Identities=13%  Similarity=0.116  Sum_probs=56.3

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC----eEEEcCeEEEccCCChHHHHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G----~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      +..+|+.++...+.+.+.+.|++++.+++|+++..+++.+.|++.++    .+++|+.||.|+|.|+.-...
T Consensus       149 dg~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~  220 (502)
T PRK13369        149 DCWVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIH  220 (502)
T ss_pred             CeeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence            34578999999999999999999999999999987776666766543    369999999999999865533

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.16  E-value=6.4e-10  Score=122.41  Aligned_cols=68  Identities=13%  Similarity=0.205  Sum_probs=54.9

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CC--eEEEcCeEEEccCCChHHHHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~---~G--~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      +..+|+.++...+.+.+.++|++++.+++|+++..++++++ |++.   ++  .+++|+.||.|+|.|+.-...
T Consensus       143 dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~  216 (546)
T PRK11101        143 DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAE  216 (546)
T ss_pred             CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHH
Confidence            35689999999999999999999999999999987766543 3332   23  479999999999999876544

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.16  E-value=6.5e-10  Score=121.33  Aligned_cols=144  Identities=18%  Similarity=0.226  Sum_probs=89.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC--CCCCc---ccccccH-HHHHHHHHcCCCChHhHHHHHhhhcCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT--LKGRE---QEWNISR-KELLELVESGILVEDDIDEATATKFNPN  182 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~--~~~~~---~~~~is~-~~l~~L~~lGl~~~~~~~~~~~~~~~~~  182 (535)
                      +||||||| |+||+.+|+.+|+.|.+|+|||++.  ++...   ....+.. +.++++..+|-......+.. ...+.  
T Consensus         4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~-giq~r--   80 (618)
T PRK05192          4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKT-GIQFR--   80 (618)
T ss_pred             cceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhc-cCcee--
Confidence            69999999 9999999999999999999999973  22211   1111111 12233322332111111110 00010  


Q ss_pred             cccccccCc-ceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCC
Q 009427          183 RCGFEGKGE-IWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       183 ~~~~~~~~~-~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~  259 (535)
                      .... ..+. .+   .....+|+..+...+.+.+.+. |++++ +++|+++..+++.+. |.+.+|..+.|+.||+|+|.
T Consensus        81 ~ln~-skGpAV~---s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         81 MLNT-SKGPAVR---ALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             eccc-CCCCcee---CcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCc
Confidence            0000 0111 11   1123588889999999888876 66775 567899877766654 66778889999999999998


Q ss_pred             Ch
Q 009427          260 FS  261 (535)
Q Consensus       260 ~S  261 (535)
                      ++
T Consensus       156 FL  157 (618)
T PRK05192        156 FL  157 (618)
T ss_pred             ch
Confidence            75

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.13  E-value=1.2e-09  Score=123.22  Aligned_cols=63  Identities=19%  Similarity=0.105  Sum_probs=55.6

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ..+++..+.+.|.+.+.+ |++++++++|++++.++++++|.+++|..++|+.||.|+|.++.-
T Consensus       403 G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~  465 (662)
T PRK01747        403 GWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAAR  465 (662)
T ss_pred             CeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCccc
Confidence            457899999999999988 999999999999988888888888777778899999999998853

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.11  E-value=2.1e-09  Score=114.20  Aligned_cols=66  Identities=20%  Similarity=0.091  Sum_probs=54.8

Q ss_pred             ccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-----eEEEcCeEEEccCCChHHHHH
Q 009427          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-----KILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       201 ~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G-----~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      .+++.++...|.+.+.+.|++++++++|++++.+++++++.+.++     .+++|+.||+|+|.++.....
T Consensus       193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~  263 (410)
T PRK12409        193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAA  263 (410)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHH
Confidence            468889999999999999999999999999987777776655432     369999999999999865544

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.11  E-value=2e-09  Score=116.75  Aligned_cols=70  Identities=13%  Similarity=0.081  Sum_probs=56.1

Q ss_pred             ccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCe-EEEEEc---CCe--EEEcCeEEEccCCChHHHHHhC
Q 009427          199 NLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENA-AVLLLA---EGK--ILSSHLIIDAMGNFSPVVKQAF  268 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~g-v~v~~~---~G~--~i~a~lVV~AdG~~S~v~~~~~  268 (535)
                      +..+|+..+.+.|.+.+.+.| ++++++++|++++.++++ +.+.+.   +|+  +++|++||+|+|.+|.-..+.+
T Consensus       177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~  253 (494)
T PRK05257        177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKS  253 (494)
T ss_pred             ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence            446899999999999998887 799999999999876664 655543   353  6999999999999987666544

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.10  E-value=2.3e-09  Score=113.89  Aligned_cols=66  Identities=12%  Similarity=0.026  Sum_probs=51.5

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeE-EEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAA-VLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~gv-~v~~~~G~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      ..+++..+...|.+.+.+.|++++++++|++++..+ +.+ .|.+.+| ++.|+.||+|+|.++....+
T Consensus       178 g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~  245 (407)
T TIGR01373       178 GTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAA  245 (407)
T ss_pred             CcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHH
Confidence            457888888899999999999999999999997543 443 3666556 69999988888878765444

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.08  E-value=3.4e-09  Score=114.83  Aligned_cols=71  Identities=14%  Similarity=0.130  Sum_probs=56.9

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEc---CC--eEEEcCeEEEccCCChHHHHHhCC
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLA---EG--KILSSHLIIDAMGNFSPVVKQAFP  269 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~---~G--~~i~a~lVV~AdG~~S~v~~~~~p  269 (535)
                      ...+|+..+.+.|.+.+.+.|++++++++|++++.+++ ++.+.+.   +|  .+++|+.||+|.|.+|.-..+.+.
T Consensus       172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~G  248 (483)
T TIGR01320       172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSG  248 (483)
T ss_pred             CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcC
Confidence            34589999999999999999999999999999987554 4666532   23  369999999999999876665443

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.06  E-value=4.9e-09  Score=113.46  Aligned_cols=68  Identities=18%  Similarity=0.102  Sum_probs=56.1

Q ss_pred             cccCHHHHHHHHHHHHHh----CC--CEEEeCceEEEEEEe-CCeEEEEEcCCeEEEcCeEEEccCCChHHHHHhC
Q 009427          200 LGVSPAKLIEIVKKRFIS----LG--GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAF  268 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~----~G--~~i~~~~~V~~i~~~-~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~  268 (535)
                      ..+|+..+.+.+.+.+.+    .|  ++++++++|++|+.+ ++.+.|++.+| +++|+.||.|+|.||....+.+
T Consensus       206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~  280 (497)
T PTZ00383        206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKM  280 (497)
T ss_pred             EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHh
Confidence            358999999999999988    77  678999999999876 44567777666 6999999999999997655533

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.04  E-value=2.2e-09  Score=112.20  Aligned_cols=60  Identities=17%  Similarity=0.145  Sum_probs=48.8

Q ss_pred             ccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          199 NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ...+|+..++..|.+.+.+. |++++++++|++++.  +  .|.+.+| +++|+.||.|+|.++.-
T Consensus       139 ~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~--~v~t~~g-~i~a~~VV~A~G~~s~~  199 (365)
T TIGR03364       139 ELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G--TVRTSRG-DVHADQVFVCPGADFET  199 (365)
T ss_pred             CeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C--eEEeCCC-cEEeCEEEECCCCChhh
Confidence            34589999999999988775 999999999999853  2  4566555 57899999999998753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.04  E-value=3.5e-09  Score=105.31  Aligned_cols=152  Identities=21%  Similarity=0.281  Sum_probs=96.7

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc----ccH-------------HHHHHHHHc-------
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN----ISR-------------KELLELVES-------  163 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~----is~-------------~~l~~L~~l-------  163 (535)
                      ..+|||||| |+-|+++|++|||+|.+++++|+.+++......+    |-+             +.++.+.++       
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~   85 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK   85 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence            468999999 9999999999999999999999997653211110    111             112222111       


Q ss_pred             -----CCCC---h--HhHHHHH------------------hhhcCCCcccccccCcceeeeccccccCHHHHHHHHHHHH
Q 009427          164 -----GILV---E--DDIDEAT------------------ATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRF  215 (535)
Q Consensus       164 -----Gl~~---~--~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a  215 (535)
                           +++.   .  .+++...                  ...|. ....+. ++..-..+..+..+++.+-+..+...+
T Consensus        86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP-~~~~l~-d~~~G~~n~~gGvi~a~kslk~~~~~~  163 (399)
T KOG2820|consen   86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFP-SNIPLP-DGWQGVVNESGGVINAAKSLKALQDKA  163 (399)
T ss_pred             ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCC-CCccCC-cchhhcccccccEeeHHHHHHHHHHHH
Confidence                 1110   1  1111110                  01121 111111 111112233445578889999999999


Q ss_pred             HhCCCEEEeCceEEEEEE---eCCeEEEEEcCCeEEEcCeEEEccCCChH
Q 009427          216 ISLGGVIFEGYSVSSICT---YENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       216 ~~~G~~i~~~~~V~~i~~---~~~gv~v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                      ++.|+.++.+.+|+.+..   ++..+.|.+.+|..+.|+.+|.+.|+|-.
T Consensus       164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~  213 (399)
T KOG2820|consen  164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN  213 (399)
T ss_pred             HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence            999999999999988763   23457788888888999999999999853

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.02  E-value=5.3e-09  Score=111.29  Aligned_cols=65  Identities=11%  Similarity=0.077  Sum_probs=54.0

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChHHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVK  265 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~v~~  265 (535)
                      ..+|+..+.+.|.+.+.+.|++++++++|++++.+++++. |++. +.+++|+.||+|+|.++....
T Consensus       196 g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~  261 (416)
T PRK00711        196 ETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALL  261 (416)
T ss_pred             ccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHH
Confidence            3578899999999999999999999999999987777654 5554 447999999999999986543

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.99  E-value=5.1e-09  Score=108.78  Aligned_cols=141  Identities=19%  Similarity=0.222  Sum_probs=80.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEE-cccC-CCCC---cccccccHHH-HHHHHHcCCCChHhHHHHHhhhcCCCcc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIV-ERNT-LKGR---EQEWNISRKE-LLELVESGILVEDDIDEATATKFNPNRC  184 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~li-Er~~-~~~~---~~~~~is~~~-l~~L~~lGl~~~~~~~~~~~~~~~~~~~  184 (535)
                      |||||| |.||+.||+++|+.|.+|+|+ ++.. +...   +....+.... .+++..+|-+-....+.. ...|     
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~-~i~~-----   74 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADET-GIHF-----   74 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHH-EEEE-----
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHh-hhhh-----
Confidence            899999 999999999999999999999 3321 1111   1111222222 223333342111111110 0111     


Q ss_pred             cccccCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCC
Q 009427          185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       185 ~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~  259 (535)
                      .......+.....+...+|+..+.+.+.+.+.+.+ .+++ +.+|+++..+++.+. |.+.+|..+.|+.||+|+|.
T Consensus        75 ~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   75 RMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             EEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             hcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            11111111111112346899999999999998854 5665 679999988777654 66778999999999999997

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.98  E-value=7.2e-10  Score=118.52  Aligned_cols=143  Identities=20%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc-------ccHHHHHHHHHcCCCChHhHHHHHhhhcCCCc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-------ISRKELLELVESGILVEDDIDEATATKFNPNR  183 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~-------is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~  183 (535)
                      |||||| |++|++||+.+|+.|.+|+||||....++.....       .....  .+ ..|+  .   ++...+....+.
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~--~~-~~gi--~---~e~~~~~~~~~~   72 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED--QV-IGGI--F---REFLNRLRARGG   72 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH--HH-HHHH--H---HHHHHST-----
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh--cc-CCCH--H---HHHHHHHhhhcc
Confidence            899999 9999999999999999999999987544322111       00000  00 0011  0   111110000000


Q ss_pred             ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE---EEEEcCC-eEEEcCeEEEccCC
Q 009427          184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA---VLLLAEG-KILSSHLIIDAMGN  259 (535)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv---~v~~~~G-~~i~a~lVV~AdG~  259 (535)
                      .... ....+..   .+.+++..+...|.+.+.+.|++++.++.|+++..+++.+   ++...+| .+++|+.||||||.
T Consensus        73 ~~~~-~~~~~~~---~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   73 YPQE-DRYGWVS---NVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc-ccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0000 0001100   1345666666777777778899999999999998876543   3333334 57999999999996


Q ss_pred             ChHHHHH
Q 009427          260 FSPVVKQ  266 (535)
Q Consensus       260 ~S~v~~~  266 (535)
                      ..-....
T Consensus       149 g~l~~~a  155 (428)
T PF12831_consen  149 GDLAALA  155 (428)
T ss_dssp             -------
T ss_pred             ccccccc
Confidence            5433333

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.98  E-value=1.6e-08  Score=108.24  Aligned_cols=180  Identities=16%  Similarity=0.225  Sum_probs=104.5

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCCChHHHHHhCCCCCCCCCc
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDR  277 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p~~~~~~~~  277 (535)
                      +..+||..+.+.|...|.+.|+.|++++.|++|....++. -|++..| .+++..||+|+|.|...+..+ +....|.  
T Consensus       181 DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m-~gvkvPL--  256 (856)
T KOG2844|consen  181 DGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAM-AGVKVPL--  256 (856)
T ss_pred             CcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhh-cCCcccc--
Confidence            5678999999999999999999999999999998776653 3566545 599999999999998666553 2222221  


Q ss_pred             eeEEEEEe--cCCCCC-----CChHH--------------HHHHHh--hhccCcc--CC--CCCccchhc------chhc
Q 009427          278 TTYMFTYI--DPQAGS-----PKLEE--------------LLERYW--DLMPEYQ--GV--TLDNLEIQR------VIYG  324 (535)
Q Consensus       278 ~~~~~~y~--~~~~~~-----~~l~~--------------~~~~~~--~~~P~~~--~~--~~~~~~~~r------~~~g  324 (535)
                      ......|.  ..++.-     +.+.+              .+.+|-  .++++..  .+  .+.+..|..      ....
T Consensus       257 ~p~~H~YvvT~~IeGi~s~t~p~irD~DgSvylR~~~~gil~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesai~  336 (856)
T KOG2844|consen  257 VPMHHAYVVTSRIEGVSSLTRPNIRDLDGSVYLRQQGDGILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAAIE  336 (856)
T ss_pred             eeeeeeEEEecccCCccCCCccceecccceEEEEecCCceeccccccCceeccccCCccccccccccHhhhHHHHHHHHH
Confidence            11112221  111100     00000              001110  0111100  00  011122221      0111


Q ss_pred             cccCCCC--------CCCCccCCCeeEeecCCCcccccccccch-HHHHHHHHHHHHHHHHHhCCCC
Q 009427          325 IFPTYRD--------SPLPAAFNRILQFGDASGIQSPVSFGGFG-SLTRHLGRLSTGVYEAVRGDFV  382 (535)
Q Consensus       325 ~~P~~~~--------~pl~~~~~rvlliGDAA~~~~P~~G~Gi~-~al~da~~La~~l~~al~~~~~  382 (535)
                      .+|....        .|.....|..-++|.+-....-+.+.||| .+|+-+.-+.+.+++++-+|..
T Consensus       337 r~P~l~k~~i~~~v~gpe~ftPD~~p~mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk~la~wi~~g~p  403 (856)
T KOG2844|consen  337 RVPVLEKAGIKSLVNGPETFTPDHLPIMGESPEVRGYWVACGFNSAGLSFGGGCGKYLAEWIIHGQP  403 (856)
T ss_pred             hCchhhhcCccceecCccccCCccccccCCCccccceEEeecCCccceeccCchhHHHHHHhhcCCC
Confidence            2343321        11122247778899999999999999999 6677777778888888877654

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.95  E-value=2.1e-09  Score=102.61  Aligned_cols=135  Identities=18%  Similarity=0.221  Sum_probs=75.3

Q ss_pred             EEEc-chHHHHHHHHHHHCCCc-EEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcC-CCcccccccC
Q 009427          114 IVCG-GTLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFN-PNRCGFEGKG  190 (535)
Q Consensus       114 vIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~-~~~~~~~~~~  190 (535)
                      +||| ||+|+++|+.|.++|.+ |+||||+.-.++  .|..... ..     .+.......    ..+. +....+....
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg--~w~~~~~-~~-----~~~~~~~~~----~~~~~~~~~~~~~~~   68 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGG--VWRRYYS-YT-----RLHSPSFFS----SDFGLPDFESFSFDD   68 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTT--HHHCH-T-TT-----T-BSSSCCT----GGSS--CCCHSCHHH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCC--eeEEeCC-CC-----ccccCcccc----ccccCCccccccccc
Confidence            6999 99999999999999999 999999843332  1210000 00     000000000    0000 0000000000


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      .... ...........+.+.+.+.+.+.+..++.+++|+++..+++++.|+++++.+++|+.||+|+|..+
T Consensus        69 ~~~~-~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~  138 (203)
T PF13738_consen   69 SPEW-RWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYS  138 (203)
T ss_dssp             HHHH-HHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSC
T ss_pred             CCCC-CCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccC
Confidence            0000 000111345667788888888888889999999999999999999998888899999999999755

...

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.95  E-value=1.2e-08  Score=110.29  Aligned_cols=70  Identities=11%  Similarity=0.017  Sum_probs=55.6

Q ss_pred             cccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEe-CCeEEEEE---cCCe--EEEcCeEEEccCCChHHHHHhCC
Q 009427          200 LGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTY-ENAAVLLL---AEGK--ILSSHLIIDAMGNFSPVVKQAFP  269 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~-~~gv~v~~---~~G~--~i~a~lVV~AdG~~S~v~~~~~p  269 (535)
                      ..+|...+.+.|.+.+.+ .|++++++++|+++..+ ++++++.+   .++.  +++||.||+|.|++|.-..+.+.
T Consensus       179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~G  255 (497)
T PRK13339        179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSG  255 (497)
T ss_pred             eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcC
Confidence            458999999999999865 48999999999999876 55676653   3342  68999999999999976665443

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.94  E-value=1.9e-08  Score=110.69  Aligned_cols=155  Identities=19%  Similarity=0.223  Sum_probs=89.6

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc--------cHH-HHHHHHHc--CCCChHhHHH
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI--------SRK-ELLELVES--GILVEDDIDE  173 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i--------s~~-~l~~L~~l--Gl~~~~~~~~  173 (535)
                      .++|||||| |.+|+++|+.+++.|.+|+||||....+++..+   .+        +.. .++.+...  |+.+++.++.
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~   94 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS   94 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            369999999 999999999999999999999998754332211   01        111 12222222  2323322221


Q ss_pred             HHhh-----hc-CCCccccccc--Cc-------ceeeecccc---ccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC
Q 009427          174 ATAT-----KF-NPNRCGFEGK--GE-------IWVEDILNL---GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE  235 (535)
Q Consensus       174 ~~~~-----~~-~~~~~~~~~~--~~-------~~~~~~~~~---~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~  235 (535)
                      .+..     .| ....+.|...  +.       .+...+...   ...-..+.+.|.+++.+.|+++++++.|+++..++
T Consensus        95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~  174 (541)
T PRK07804         95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDG  174 (541)
T ss_pred             HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcC
Confidence            1110     00 0001111110  00       011011000   01235678889998888899999999999998765


Q ss_pred             C----eEEEE-----EcCC-eEEEcCeEEEccCCChHH
Q 009427          236 N----AAVLL-----LAEG-KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       236 ~----gv~v~-----~~~G-~~i~a~lVV~AdG~~S~v  263 (535)
                      +    ++.+.     ..++ ..+.|+.||+|||.++.+
T Consensus       175 ~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~  212 (541)
T PRK07804        175 TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQL  212 (541)
T ss_pred             CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCC
Confidence            4    23333     1233 468999999999998854

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.94  E-value=1.2e-08  Score=103.04  Aligned_cols=111  Identities=23%  Similarity=0.357  Sum_probs=79.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      |||+||| |++|+++|..|++.|++|+|||+...++.  ..                ....     ...| |.   +   
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~--~~----------------~~~~-----~~~~-~~---~---   50 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQ--LT----------------TTTE-----VENY-PG---F---   50 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcc--ee----------------eccc-----cccc-CC---C---
Confidence            6999999 99999999999999999999998853221  00                0000     0001 11   0   


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                               ...+....+...+.+.+.+.|++++. ++|++++.+++.+.+.+.++.++.+|.||.|+|...
T Consensus        51 ---------~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        51 ---------PEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             ---------CCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence                     00122345556777788888999988 899999877777778777778899999999999754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.94  E-value=2.6e-08  Score=111.25  Aligned_cols=69  Identities=17%  Similarity=0.211  Sum_probs=54.2

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC--CeEE-EEE---cCCe--EEEcCeEEEccCCChHHHHHh
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPVVKQA  267 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~--~gv~-v~~---~~G~--~i~a~lVV~AdG~~S~v~~~~  267 (535)
                      +..+|+.++...+.+.+.+.|++++.+++|+++..++  +.+. |.+   .+++  +++|+.||+|+|+||......
T Consensus       226 Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~  302 (627)
T PLN02464        226 DGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKM  302 (627)
T ss_pred             CcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHh
Confidence            3457999999999999999999999999999998763  4332 333   2343  689999999999998766553

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.93  E-value=2.3e-08  Score=109.24  Aligned_cols=154  Identities=15%  Similarity=0.173  Sum_probs=86.6

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---c--ccHH--------------HHHHHHHcC--CC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---N--ISRK--------------ELLELVESG--IL  166 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~--is~~--------------~l~~L~~lG--l~  166 (535)
                      .++|||||| |.+|+++|+.+++.|.+|+||||....++....   .  ....              .++.+.+.+  ..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~  139 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN  139 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence            479999999 999999999999999999999998654432111   1  1111              111111111  11


Q ss_pred             ChHhHHHHHh-----hhc-CCCcccccc----cCcce--eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe
Q 009427          167 VEDDIDEATA-----TKF-NPNRCGFEG----KGEIW--VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY  234 (535)
Q Consensus       167 ~~~~~~~~~~-----~~~-~~~~~~~~~----~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~  234 (535)
                      +++.+.....     ..| ....+.|..    .+...  .............+.+.|.+.+.+.|++++.+++|+++..+
T Consensus       140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~  219 (506)
T PRK06481        140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK  219 (506)
T ss_pred             CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence            1111111100     000 000011100    00000  00000011123467888999999999999999999999765


Q ss_pred             CCe---EEEEEcCC--eEEEcCeEEEccCCChH
Q 009427          235 ENA---AVLLLAEG--KILSSHLIIDAMGNFSP  262 (535)
Q Consensus       235 ~~g---v~v~~~~G--~~i~a~lVV~AdG~~S~  262 (535)
                      ++.   +.+...++  .++.|+.||.|+|.++.
T Consensus       220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~  252 (506)
T PRK06481        220 DGKVTGVKVKINGKETKTISSKAVVVTTGGFGA  252 (506)
T ss_pred             CCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence            553   33433343  36899999999998764

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.92  E-value=2.5e-08  Score=107.91  Aligned_cols=154  Identities=19%  Similarity=0.204  Sum_probs=85.4

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC--CCCcccc--cc---------------cH-HHHHHHHHc-C-C
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL--KGREQEW--NI---------------SR-KELLELVES-G-I  165 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~--~~~~~~~--~i---------------s~-~~l~~L~~l-G-l  165 (535)
                      .++|||||| |++|+++|+.++++|.+|+||||...  .++...+  ++               +. ..++.+.+. + .
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR   82 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence            368999999 99999999999999999999999852  2221110  00               00 111222111 1 1


Q ss_pred             CChHhHHHHHhh-----hc-CCCcccccc--cCcceeee-ccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC
Q 009427          166 LVEDDIDEATAT-----KF-NPNRCGFEG--KGEIWVED-ILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN  236 (535)
Q Consensus       166 ~~~~~~~~~~~~-----~~-~~~~~~~~~--~~~~~~~~-~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~  236 (535)
                      .+.+.++..+..     .| ....+.|..  .+...... .....-....+...|.+.+++.|++++.+++|+++..+++
T Consensus        83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g  162 (466)
T PRK08274         83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG  162 (466)
T ss_pred             CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence            111111111110     00 000011110  00000000 0000011356788899999999999999999999987655


Q ss_pred             eEE-EEE--cCC--eEEEcCeEEEccCCChH
Q 009427          237 AAV-LLL--AEG--KILSSHLIIDAMGNFSP  262 (535)
Q Consensus       237 gv~-v~~--~~G--~~i~a~lVV~AdG~~S~  262 (535)
                      .++ |.+  .++  ..++|+.||+|+|.++.
T Consensus       163 ~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~  193 (466)
T PRK08274        163 RFVGARAGSAAGGAERIRAKAVVLAAGGFES  193 (466)
T ss_pred             eEEEEEEEccCCceEEEECCEEEECCCCCCC
Confidence            443 223  233  46899999999997653

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.91  E-value=2.8e-08  Score=104.49  Aligned_cols=67  Identities=16%  Similarity=0.170  Sum_probs=53.4

Q ss_pred             ccccCHHHHHHHHHHHHHhCCC-EEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGG-VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~-~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      ...+|+..+.+.+.+.+.+.|+ .+..++.+..+..+.+.+.|.+.+|. +.|+.||.|+|+++.....
T Consensus       150 ~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~  217 (387)
T COG0665         150 GGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAA  217 (387)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHH
Confidence            4558899999999999999995 56668899988653245667776665 9999999999999876543

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.90  E-value=2.8e-08  Score=106.73  Aligned_cols=151  Identities=17%  Similarity=0.163  Sum_probs=85.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCC-CcEEEEcccCCCCCcccc------cc-cH-----------H-HHHHHHHc--CCCCh
Q 009427          112 DVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEW------NI-SR-----------K-ELLELVES--GILVE  168 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~~~~~~~~~------~i-s~-----------~-~l~~L~~l--Gl~~~  168 (535)
                      |||||| |++|+++|+.++++| .+|+||||....++....      .. +.           . .++.+.+.  +..++
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP   80 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            899999 999999999999999 999999998654332111      00 10           0 11111111  11111


Q ss_pred             HhHHHHHhh-----hcCCCcccccc------cCcce--eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC
Q 009427          169 DDIDEATAT-----KFNPNRCGFEG------KGEIW--VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE  235 (535)
Q Consensus       169 ~~~~~~~~~-----~~~~~~~~~~~------~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~  235 (535)
                      +.++.....     .|-...+.+..      .+..+  .........+...+.+.|.+.+.+.|++++.+++|+++..++
T Consensus        81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~  160 (439)
T TIGR01813        81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD  160 (439)
T ss_pred             HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence            111111100     00000000100      00000  000001112346788899999999999999999999998765


Q ss_pred             Ce----EEEEEcCCe--EEEcCeEEEccCCChH
Q 009427          236 NA----AVLLLAEGK--ILSSHLIIDAMGNFSP  262 (535)
Q Consensus       236 ~g----v~v~~~~G~--~i~a~lVV~AdG~~S~  262 (535)
                      ++    +++...+++  .+.++.||.|+|.++.
T Consensus       161 ~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       161 QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             CCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            42    334333443  4789999999998875

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.88  E-value=3.1e-08  Score=105.50  Aligned_cols=66  Identities=24%  Similarity=0.282  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---EEE-cCCe--EEEcCeEEEccCCChH-HHHHhCC
Q 009427          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLL-AEGK--ILSSHLIIDAMGNFSP-VVKQAFP  269 (535)
Q Consensus       204 ~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~---v~~-~~G~--~i~a~lVV~AdG~~S~-v~~~~~p  269 (535)
                      ...+.+.|.+.+++.|++++.+++++++..+++.|+   +.. .+|+  +++|+.||.|+|.++. ..++..|
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~  212 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYP  212 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-G
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccccccccccc
Confidence            467889999999999999999999999999877543   231 3453  5899999999999994 5555444

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR00551 nadB L-aspartate oxidase

Probab=98.87  E-value=3.9e-08  Score=107.02  Aligned_cols=153  Identities=16%  Similarity=0.231  Sum_probs=87.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHc--CCCChHhHHHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I--------SR-KELLELVES--GILVEDDIDEA  174 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~l--Gl~~~~~~~~~  174 (535)
                      ++|||||| |++|+++|+.+++.|. |+||||....+....+.   +        +. ..++.+...  ++.+++.++..
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   80 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV   80 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            48999999 9999999999999997 99999996544322211   1        11 112222222  23232222211


Q ss_pred             Hhh-----hc-CCCccccccc--Cc-------ceeeecc-c-cccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCC
Q 009427          175 TAT-----KF-NPNRCGFEGK--GE-------IWVEDIL-N-LGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYEN  236 (535)
Q Consensus       175 ~~~-----~~-~~~~~~~~~~--~~-------~~~~~~~-~-~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~  236 (535)
                      ...     .| ....+.|...  +.       .+...+. . .......+.+.|.+++.+ .|+++++++.|+++..+++
T Consensus        81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g  160 (488)
T TIGR00551        81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG  160 (488)
T ss_pred             HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence            110     00 0001111100  00       0000000 0 011345788889998887 5899999999999976655


Q ss_pred             eEE-EEEcC-C--eEEEcCeEEEccCCChHH
Q 009427          237 AAV-LLLAE-G--KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       237 gv~-v~~~~-G--~~i~a~lVV~AdG~~S~v  263 (535)
                      .+. +.+.+ +  ..+.|+.||+|+|.++.+
T Consensus       161 ~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       161 RVVGVWVWNRETVETCHADAVVLATGGAGKL  191 (488)
T ss_pred             EEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence            443 33322 3  468999999999999864

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.87  E-value=4.1e-08  Score=108.85  Aligned_cols=153  Identities=16%  Similarity=0.220  Sum_probs=86.0

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---c----c-------cHH-HHHHHHH--cCCCChHhHHH
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---N----I-------SRK-ELLELVE--SGILVEDDIDE  173 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~----i-------s~~-~l~~L~~--lGl~~~~~~~~  173 (535)
                      |||||| |++|+++|+.+++.|.+|+||||....+....+   +    .       +.. .++....  .++.+++.++.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~   80 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY   80 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence            899999 999999999999999999999998654322111   0    0       111 1111111  12333222221


Q ss_pred             HHhh-----hc-CCCcccccc--cCc-------ceeeeccccc--cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC
Q 009427          174 ATAT-----KF-NPNRCGFEG--KGE-------IWVEDILNLG--VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN  236 (535)
Q Consensus       174 ~~~~-----~~-~~~~~~~~~--~~~-------~~~~~~~~~~--v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~  236 (535)
                      ....     .| ..-.+.|..  .+.       .+...+..+.  .....+...|.+.+.+.|+++++++.++++..+++
T Consensus        81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g  160 (566)
T TIGR01812        81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDDG  160 (566)
T ss_pred             HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCC
Confidence            1110     00 000011110  000       0000010011  12345778888888888999999999999987665


Q ss_pred             eEE---E-EEcCCe--EEEcCeEEEccCCChHHH
Q 009427          237 AAV---L-LLAEGK--ILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       237 gv~---v-~~~~G~--~i~a~lVV~AdG~~S~v~  264 (535)
                      .++   + ...+|+  .+.|+.||+|+|.++.+.
T Consensus       161 ~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~  194 (566)
T TIGR01812       161 RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIY  194 (566)
T ss_pred             EEEEEEEEECCCCcEEEEECCeEEECCCcccCCC
Confidence            443   1 123453  689999999999987543

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN02661 Putative thiazole synthesis

Probab=98.85  E-value=5.6e-08  Score=99.66  Aligned_cols=217  Identities=14%  Similarity=0.219  Sum_probs=114.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      ++||+||| |++|+++|+.|++. |++|+||||....++. .|.-. ..+..+    +.. ..... +...+.   +.|.
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG-~~~gg-~l~~~~----vv~-~~a~e-~LeElG---V~fd  160 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG-AWLGG-QLFSAM----VVR-KPAHL-FLDELG---VPYD  160 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc-eeeCc-cccccc----ccc-cHHHH-HHHHcC---CCcc
Confidence            68999999 99999999999986 8999999998643321 22100 000000    000 00000 001110   1111


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE---EEEE----cC--C------eEEEcC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA---VLLL----AE--G------KILSSH  251 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv---~v~~----~~--G------~~i~a~  251 (535)
                      ..+ .+.     ...+...+...|.+++.+ .|++++.++.|+++..+++.+   ++..    .+  +      ..++|+
T Consensus       161 ~~d-gy~-----vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~Ak  234 (357)
T PLN02661        161 EQE-NYV-----VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAK  234 (357)
T ss_pred             cCC-Cee-----EecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECC
Confidence            011 110     011345566778887765 689999999999998776542   2210    11  1      268999


Q ss_pred             eEEEccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhccccCCCC
Q 009427          252 LIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRD  331 (535)
Q Consensus       252 lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~  331 (535)
                      .||+|+|+..++....+-...    .    ..+....+...++        |. .     ..++.....        .  
T Consensus       235 aVVlATGh~g~~ga~~~~~~~----~----~g~~~~~pg~~~~--------~~-~-----~~e~~~v~~--------t--  282 (357)
T PLN02661        235 VVVSSCGHDGPFGATGVKRLK----S----IGMIDSVPGMKAL--------DM-N-----AAEDAIVRL--------T--  282 (357)
T ss_pred             EEEEcCCCCCcchhhhhhccc----c----cCCccCCCCcccc--------ch-h-----hHHHHHHhc--------c--
Confidence            999999976654333211100    0    0011111110000        00 0     001111000        0  


Q ss_pred             CCCCccCCCeeEeecCCCcc--cccccccchHHHHHHHHHHHHHHHHHh
Q 009427          332 SPLPAAFNRILQFGDASGIQ--SPVSFGGFGSLTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       332 ~pl~~~~~rvlliGDAA~~~--~P~~G~Gi~~al~da~~La~~l~~al~  378 (535)
                         ....+++++.|-|+..+  .|=.|-=|+.++.+....|+.|.+.|+
T Consensus       283 ---~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~  328 (357)
T PLN02661        283 ---REVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG  328 (357)
T ss_pred             ---CcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence               11146788888887654  355565666778888889998888775

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.84  E-value=4.5e-08  Score=108.59  Aligned_cols=154  Identities=18%  Similarity=0.218  Sum_probs=86.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccc---cc-----------cHH-HHHHHHH--cCCCChH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEW---NI-----------SRK-ELLELVE--SGILVED  169 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~---~i-----------s~~-~l~~L~~--lGl~~~~  169 (535)
                      ++|||||| |++|+++|+.+++.  |.+|+||||....++...+   ++           +.. .++....  .++.+++
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~   82 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD   82 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence            58999999 99999999999987  4899999998653322111   11           011 1111111  1232332


Q ss_pred             hHHHHHhh-----hc-CCCccccccc--Cc-------ceeeeccccccC--HHHHHHHHHHHHHhCCCEEEeCceEEEEE
Q 009427          170 DIDEATAT-----KF-NPNRCGFEGK--GE-------IWVEDILNLGVS--PAKLIEIVKKRFISLGGVIFEGYSVSSIC  232 (535)
Q Consensus       170 ~~~~~~~~-----~~-~~~~~~~~~~--~~-------~~~~~~~~~~v~--~~~l~~~L~~~a~~~G~~i~~~~~V~~i~  232 (535)
                      .++.....     .+ ..-.+.|...  +.       .+...+..+..+  ...+.+.|.+++.+.|+++++++.|+++.
T Consensus        83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~  162 (575)
T PRK05945         83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLI  162 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEE
Confidence            22211110     00 0001111110  00       000011111112  25677888888888899999999999997


Q ss_pred             EeCCeEE----EEEcCCe--EEEcCeEEEccCCChHH
Q 009427          233 TYENAAV----LLLAEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       233 ~~~~gv~----v~~~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      .+++.+.    +...+|+  .+.|+.||.|+|.++.+
T Consensus       163 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~  199 (575)
T PRK05945        163 LEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV  199 (575)
T ss_pred             EECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence            7655432    2233553  58999999999998754

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.84  E-value=3.9e-08  Score=107.39  Aligned_cols=142  Identities=18%  Similarity=0.179  Sum_probs=86.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-----ccccccHH-HHHHHHHcCCCChHhHHHHHh--hhcCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-----QEWNISRK-ELLELVESGILVEDDIDEATA--TKFNP  181 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-----~~~~is~~-~l~~L~~lGl~~~~~~~~~~~--~~~~~  181 (535)
                      ||||||| |++|+.+|..+++.|.+|+|+|++....+.     ....+... ..+++..+|-......+....  +..++
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~   80 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS   80 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence            7999999 999999999999999999999987421111     11111111 122222223111111111100  11111


Q ss_pred             CcccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEe-CCe-EEEEEcCCeEEEcCeEEEccC
Q 009427          182 NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTY-ENA-AVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~-~~g-v~v~~~~G~~i~a~lVV~AdG  258 (535)
                      .      .+...  ......+|+..+.+.+.+.+.+. +++++ ..+|+++..+ ++. ..|.+.+|..+.|+.||+|+|
T Consensus        81 s------kgpAV--~~~RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATG  151 (617)
T TIGR00136        81 S------KGPAV--RATRAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTG  151 (617)
T ss_pred             C------CCCcc--cccHHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccC
Confidence            1      11110  11234689999999999999888 55666 4578887665 333 346667788899999999999


Q ss_pred             CCh
Q 009427          259 NFS  261 (535)
Q Consensus       259 ~~S  261 (535)
                      .+.
T Consensus       152 tfL  154 (617)
T TIGR00136       152 TFL  154 (617)
T ss_pred             ccc
Confidence            995

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.83  E-value=5.6e-08  Score=107.86  Aligned_cols=155  Identities=14%  Similarity=0.136  Sum_probs=87.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHcC--CCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWN---I--------SR-KELLELVESG--ILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~lG--l~~~~~~~  172 (535)
                      ++|||||| |.+|+++|+.+++.  |.+|+||||....+....+.   +        +. ..++.....|  +.+++.++
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~   83 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE   83 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence            68999999 99999999999987  58999999986544322111   0        11 1122222222  32322221


Q ss_pred             HHHh-----hhc-CCCcccccc--cCc-------ceeeeccccccC--HHHHHHHHHHHHHhC-CCEEEeCceEEEEEEe
Q 009427          173 EATA-----TKF-NPNRCGFEG--KGE-------IWVEDILNLGVS--PAKLIEIVKKRFISL-GGVIFEGYSVSSICTY  234 (535)
Q Consensus       173 ~~~~-----~~~-~~~~~~~~~--~~~-------~~~~~~~~~~v~--~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~  234 (535)
                      ..+.     ..| ..-.+.|..  .+.       .+...+.....+  -..+...|.+++.+. ++++++++.++++..+
T Consensus        84 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~  163 (582)
T PRK09231         84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD  163 (582)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe
Confidence            1110     000 000111110  000       000000000011  245777888877775 7899999999999876


Q ss_pred             CCeEE----EEEcCC--eEEEcCeEEEccCCChHHH
Q 009427          235 ENAAV----LLLAEG--KILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       235 ~~gv~----v~~~~G--~~i~a~lVV~AdG~~S~v~  264 (535)
                      ++.+.    +...+|  ..+.|+.||.|||.++.+.
T Consensus       164 ~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~  199 (582)
T PRK09231        164 DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY  199 (582)
T ss_pred             CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence            65443    233455  4689999999999988653

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.83  E-value=7.4e-08  Score=103.21  Aligned_cols=152  Identities=19%  Similarity=0.228  Sum_probs=84.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---ccc--------HHHHHHHHHcC--CCChHhHHHHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NIS--------RKELLELVESG--ILVEDDIDEAT  175 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~is--------~~~l~~L~~lG--l~~~~~~~~~~  175 (535)
                      ++|||||| |.+|+++|+.++ .|.+|+||||....+.+...   .+.        ...++.+...|  ..+++.++..+
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~~   82 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKILA   82 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            68999999 999999999975 79999999998654433211   110        11122222222  11222121111


Q ss_pred             h-----hhc-CCCcccccccC-------c-ceeeecc--ccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE
Q 009427          176 A-----TKF-NPNRCGFEGKG-------E-IWVEDIL--NLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA  238 (535)
Q Consensus       176 ~-----~~~-~~~~~~~~~~~-------~-~~~~~~~--~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv  238 (535)
                      .     ..| ....+.|....       . .+...+.  ........+.+.|.+++++ .|++++++++|+++..+++.+
T Consensus        83 ~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v  162 (433)
T PRK06175         83 NESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNTC  162 (433)
T ss_pred             HHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEE
Confidence            0     000 00001111000       0 0000000  0111235677888888875 489999999999997665543


Q ss_pred             E--EEEcCCe--EEEcCeEEEccCCChH
Q 009427          239 V--LLLAEGK--ILSSHLIIDAMGNFSP  262 (535)
Q Consensus       239 ~--v~~~~G~--~i~a~lVV~AdG~~S~  262 (535)
                      .  +...+++  .+.|+.||+|+|.++.
T Consensus       163 ~Gv~~~~~g~~~~i~Ak~VILAtGG~~~  190 (433)
T PRK06175        163 IGAICLKDNKQINIYSKVTILATGGIGG  190 (433)
T ss_pred             EEEEEEECCcEEEEEcCeEEEccCcccc
Confidence            2  1122443  6899999999998764

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=4.6e-08  Score=99.41  Aligned_cols=112  Identities=24%  Similarity=0.311  Sum_probs=78.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCc-EEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .|||+||| ||+|++||+.++|.|++ ++|+|+...++....+                 . +     ...|. +   + 
T Consensus         3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~-----------------~-~-----venyp-g---~-   54 (305)
T COG0492           3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT-----------------T-D-----VENYP-G---F-   54 (305)
T ss_pred             eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc-----------------e-e-----ecCCC-C---C-
Confidence            69999999 99999999999999999 7777776443210000                 0 0     01110 0   0 


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChH
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                                 ...+....|.+.+.+.+...|+++.. ..|..++..++..+|.+.+|. ++|+.||+|+|+...
T Consensus        55 -----------~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~  116 (305)
T COG0492          55 -----------PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR  116 (305)
T ss_pred             -----------ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence                       01133456778888888888888887 778887665546778887776 999999999997653

>PRK07121 hypothetical protein; Validated

Probab=98.82  E-value=1.2e-07  Score=103.22  Aligned_cols=59  Identities=20%  Similarity=0.219  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEE-EEE-cCC--eEEEc-CeEEEccCCChH
Q 009427          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAV-LLL-AEG--KILSS-HLIIDAMGNFSP  262 (535)
Q Consensus       204 ~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~-v~~-~~G--~~i~a-~lVV~AdG~~S~  262 (535)
                      ...+.+.|.+++++.|++++.+++|+++..+++ .++ |.. .++  ..+.| +.||+|+|.++.
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence            456888899999999999999999999987644 232 222 233  35889 999999998874

>TIGR00275 flavoprotein, HI0933 family

Probab=98.81  E-value=3.9e-08  Score=104.31  Aligned_cols=145  Identities=23%  Similarity=0.299  Sum_probs=84.1

Q ss_pred             EEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc------ccccccHH-HHHHHHH-cCCCChHhHHHHHhhhcCCC-c
Q 009427          114 IVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE------QEWNISRK-ELLELVE-SGILVEDDIDEATATKFNPN-R  183 (535)
Q Consensus       114 vIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~------~~~~is~~-~l~~L~~-lGl~~~~~~~~~~~~~~~~~-~  183 (535)
                      +||| |++|+++|+.|+++|++|+|+||+...+..      ..+|+... ....+.+ .+- ....+...+ ..|... .
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~-~~~~~~~~l-~~~~~~d~   78 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPR-NGKFLRSAL-SRFSNKDL   78 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCC-CcHHHHHHH-HhCCHHHH
Confidence            6999 999999999999999999999998633221      01111110 0111100 010 011111111 111111 0


Q ss_pred             ccccc-cCc-ceee---eccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          184 CGFEG-KGE-IWVE---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       184 ~~~~~-~~~-~~~~---~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                      ..|.. .+- ....   ......-....+.+.+.+.+.+.|++++.+++|+++..+++.+.+.+ +++++.||.||.|+|
T Consensus        79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG  157 (400)
T TIGR00275        79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATG  157 (400)
T ss_pred             HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCC
Confidence            01100 000 0000   00011123467888899999889999999999999977666677766 566799999999999


Q ss_pred             CCh
Q 009427          259 NFS  261 (535)
Q Consensus       259 ~~S  261 (535)
                      .+|
T Consensus       158 ~~s  160 (400)
T TIGR00275       158 GLS  160 (400)
T ss_pred             Ccc
Confidence            876

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.80  E-value=6.2e-08  Score=106.21  Aligned_cols=113  Identities=24%  Similarity=0.290  Sum_probs=83.2

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      ...|||+||| ||+|+++|..|++.|++|+|+|+. +++.   +.      ...   ++      +.     +. .   +
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-~GG~---~~------~~~---~~------~~-----~~-~---~  260 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-FGGQ---VL------DTM---GI------EN-----FI-S---V  260 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCe---ee------ccC---cc------cc-----cC-C---C
Confidence            4469999999 999999999999999999999864 2221   00      000   00      00     00 0   0


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                               .    ......+.+.+.+.+.+.|++++.+++|+++...++.+.+.+.+|.++.++.||.|+|...
T Consensus       261 ---------~----~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        261 ---------P----ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             ---------C----CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence                     0    0234466788888888899999999999999877677888887788899999999999854

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.80  E-value=7e-08  Score=103.98  Aligned_cols=144  Identities=15%  Similarity=0.127  Sum_probs=86.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHH-HHHHHcCCCCh------HhHHHHHhhhcCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKEL-LELVESGILVE------DDIDEATATKFNP  181 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l-~~L~~lGl~~~------~~~~~~~~~~~~~  181 (535)
                      ..+|+||| |++|+++|.+|.+.|++|+|+|+....|+  .|+.....- +.+   ++...      ...+..  +...|
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG--~W~~~~~~~~d~~---~~~~~~~~~~s~~Y~~L--~tn~p   82 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG--LWVYTPKSESDPL---SLDPTRSIVHSSVYESL--RTNLP   82 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcc--eeecCCCcCCCcc---ccCCCCcccchhhhhhh--hccCC
Confidence            47999999 99999999999999999999999853332  343221100 000   11000      000000  00001


Q ss_pred             C-cccccc---cCcce--eeeccccccCHHHHHHHHHHHHHhCCCE--EEeCceEEEEEEeCCeEEEEEcCC----eEEE
Q 009427          182 N-RCGFEG---KGEIW--VEDILNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYENAAVLLLAEG----KILS  249 (535)
Q Consensus       182 ~-~~~~~~---~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G~~--i~~~~~V~~i~~~~~gv~v~~~~G----~~i~  249 (535)
                      . ...|..   .....  ..+...+ .....+.+.|.+.+...|..  |+.+++|+++...++.+.|++.++    .+..
T Consensus        83 ~~~m~f~dfp~~~~~~~~~~~~~~f-p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~  161 (461)
T PLN02172         83 RECMGYRDFPFVPRFDDESRDSRRY-PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEI  161 (461)
T ss_pred             HhhccCCCCCCCcccccccCcCCCC-CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEE
Confidence            0 111110   00000  0000011 24567888899888888876  889999999988777888887532    2467


Q ss_pred             cCeEEEccCCCh
Q 009427          250 SHLIIDAMGNFS  261 (535)
Q Consensus       250 a~lVV~AdG~~S  261 (535)
                      +|.||+|+|+++
T Consensus       162 ~d~VIvAtG~~~  173 (461)
T PLN02172        162 FDAVVVCNGHYT  173 (461)
T ss_pred             cCEEEEeccCCC
Confidence            899999999865

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.80  E-value=7.6e-08  Score=103.31  Aligned_cols=69  Identities=14%  Similarity=0.147  Sum_probs=55.7

Q ss_pred             cccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---C--eEEEcCeEEEccCCChHHHHH
Q 009427          198 LNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       198 ~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~---G--~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      .++.+|..+|.-.....|.+.|++++..++|+++..+++-+-|.+.|   |  .+++|+.||.|+|.|+.-..+
T Consensus       157 ~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~  230 (532)
T COG0578         157 PDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILE  230 (532)
T ss_pred             ccceechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHH
Confidence            35668899999999999999999999999999998877723344433   3  369999999999999876555

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.80  E-value=9.6e-08  Score=106.47  Aligned_cols=153  Identities=17%  Similarity=0.160  Sum_probs=86.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcc--cc--cc--------cHH-HHHHHHHc--CCCChHhH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQ--EW--NI--------SRK-ELLELVES--GILVEDDI  171 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~--~~--~i--------s~~-~l~~L~~l--Gl~~~~~~  171 (535)
                      ++|||||| |.||+++|+.+++.  |.+|+||||....+...  .+  .+        +.. .++.+...  ++.+++.+
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv   90 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLV   90 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHH
Confidence            58999999 99999999999998  99999999986532221  00  01        111 11222211  22222222


Q ss_pred             HHHHhh------hcCCCcccccc--cCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEE---
Q 009427          172 DEATAT------KFNPNRCGFEG--KGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV---  239 (535)
Q Consensus       172 ~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~---  239 (535)
                      +..+..      .+....+.|..  .+..+........++...+.+.|.+.+++.+ ++++.++.|+++..+++.+.   
T Consensus        91 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~  170 (608)
T PRK06854         91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAV  170 (608)
T ss_pred             HHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEE
Confidence            111110      00000111110  0111000000011345667788888888876 99999999999976665432   


Q ss_pred             E-EEcCCe--EEEcCeEEEccCCChH
Q 009427          240 L-LLAEGK--ILSSHLIIDAMGNFSP  262 (535)
Q Consensus       240 v-~~~~G~--~i~a~lVV~AdG~~S~  262 (535)
                      + ...+++  .+.|+.||+|+|.++.
T Consensus       171 ~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        171 GFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             EEEccCCcEEEEECCEEEECCCchhh
Confidence            1 223443  6899999999998764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.78  E-value=1.2e-07  Score=105.06  Aligned_cols=154  Identities=16%  Similarity=0.198  Sum_probs=87.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHcC--CCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWN---I--------SR-KELLELVESG--ILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~lG--l~~~~~~~  172 (535)
                      ++|||||| |++|+++|+.+++.  |.+|+||||....+....+.   +        +. ..++.....|  +.+++.++
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~   82 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE   82 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence            58999999 99999999999987  68999999986544322111   1        11 1122222222  32322222


Q ss_pred             HHHhh-----hc-CCCccccccc--Cc-------ceeeecccccc--CHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEe
Q 009427          173 EATAT-----KF-NPNRCGFEGK--GE-------IWVEDILNLGV--SPAKLIEIVKKRFISL-GGVIFEGYSVSSICTY  234 (535)
Q Consensus       173 ~~~~~-----~~-~~~~~~~~~~--~~-------~~~~~~~~~~v--~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~  234 (535)
                      ..+..     .+ ..-.+.|...  +.       .+...+.....  .-..+.+.|.+++.+. ++++++++.++++..+
T Consensus        83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~  162 (580)
T TIGR01176        83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD  162 (580)
T ss_pred             HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence            11110     00 0001111100  00       00000000001  2346788888888764 7899999999999876


Q ss_pred             CCeEE----EEEcCC--eEEEcCeEEEccCCChHH
Q 009427          235 ENAAV----LLLAEG--KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       235 ~~gv~----v~~~~G--~~i~a~lVV~AdG~~S~v  263 (535)
                      ++.+.    +...+|  ..+.|+.||.|||.++.+
T Consensus       163 ~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       163 DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence            65443    223355  468999999999998865

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.78  E-value=1.5e-07  Score=101.90  Aligned_cols=153  Identities=23%  Similarity=0.284  Sum_probs=86.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcc--cccc--------cH-HHHHHHHHc--CCCChHhHHHHHh
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQ--EWNI--------SR-KELLELVES--GILVEDDIDEATA  176 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~--~~~i--------s~-~~l~~L~~l--Gl~~~~~~~~~~~  176 (535)
                      +|||||| |++|+++|+.+++.|.+|+||||....+...  ...+        +. ..++.....  ++.+++.+...+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            6999999 9999999999999999999999985322110  0111        00 112121111  2223222221111


Q ss_pred             h-----hc-CCCccccccc--Ccceeeecc-c-cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCC
Q 009427          177 T-----KF-NPNRCGFEGK--GEIWVEDIL-N-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG  245 (535)
Q Consensus       177 ~-----~~-~~~~~~~~~~--~~~~~~~~~-~-~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G  245 (535)
                      .     .| ..-.+.|...  ...+...+. . .......+.+.|.+.+.+.|++++++ .++.+..+++.++ +.+ ++
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g  159 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DG  159 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CC
Confidence            0     00 0001111100  000000000 0 01123568888999998899999876 7888876555544 333 56


Q ss_pred             eEEEcCeEEEccCCChHHHH
Q 009427          246 KILSSHLIIDAMGNFSPVVK  265 (535)
Q Consensus       246 ~~i~a~lVV~AdG~~S~v~~  265 (535)
                      ..+.++.||+|+|.++....
T Consensus       160 ~~i~a~~VVLATGG~~~~~~  179 (466)
T PRK08401        160 ELLKFDATVIATGGFSGLFK  179 (466)
T ss_pred             EEEEeCeEEECCCcCcCCCC
Confidence            78999999999999987543

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.78  E-value=1.5e-07  Score=104.21  Aligned_cols=154  Identities=14%  Similarity=0.197  Sum_probs=86.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc------------cHH-HHHHHHHcC--CCChHh
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI------------SRK-ELLELVESG--ILVEDD  170 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i------------s~~-~l~~L~~lG--l~~~~~  170 (535)
                      ++|||||| |.+|+++|+.+++.|.+|+||||....+.+..+   .+            +.. .++.....|  +.+++.
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~   84 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA   84 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence            58999999 999999999999999999999998543332111   01            001 111111112  222222


Q ss_pred             HHHHHhh-----hc-CCCccccccc--Cc-------ceeeeccccc--cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE
Q 009427          171 IDEATAT-----KF-NPNRCGFEGK--GE-------IWVEDILNLG--VSPAKLIEIVKKRFISLGGVIFEGYSVSSICT  233 (535)
Q Consensus       171 ~~~~~~~-----~~-~~~~~~~~~~--~~-------~~~~~~~~~~--v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~  233 (535)
                      ++..+..     .| ..-.+.|...  +.       .....+..+.  -.-..+...|.+++.+.|+++++++.++++..
T Consensus        85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~  164 (566)
T PRK06452         85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVT  164 (566)
T ss_pred             HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEE
Confidence            2111110     00 0001111100  00       0000000000  11245778888888888999999999999987


Q ss_pred             eCCeEE---EEE-cCC--eEEEcCeEEEccCCChHH
Q 009427          234 YENAAV---LLL-AEG--KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       234 ~~~gv~---v~~-~~G--~~i~a~lVV~AdG~~S~v  263 (535)
                      +++.++   +.. .+|  ..+.|+.||.|+|.++.+
T Consensus       165 ~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l  200 (566)
T PRK06452        165 DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML  200 (566)
T ss_pred             ECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence            655433   222 233  358999999999988743

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.78  E-value=1.6e-07  Score=104.82  Aligned_cols=154  Identities=14%  Similarity=0.135  Sum_probs=87.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c----------cH-HHHHHHHHc--CCCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I----------SR-KELLELVES--GILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i----------s~-~~l~~L~~l--Gl~~~~~~~  172 (535)
                      ++|||||| |.||+++|+.+++.|.+|+||||....++...+.   +          +. ..++.....  |+.+++.++
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~  108 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ  108 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999 9999999999999999999999986544321110   0          01 111222221  233333222


Q ss_pred             HHHhh-----hc-CCCcccccc--cCc-------ceee--------ecccccc--CHHHHHHHHHHHHHhCCCEEEeCce
Q 009427          173 EATAT-----KF-NPNRCGFEG--KGE-------IWVE--------DILNLGV--SPAKLIEIVKKRFISLGGVIFEGYS  227 (535)
Q Consensus       173 ~~~~~-----~~-~~~~~~~~~--~~~-------~~~~--------~~~~~~v--~~~~l~~~L~~~a~~~G~~i~~~~~  227 (535)
                      .....     .| ..-.+.|..  .+.       .+..        .+..+..  .-..+...|.+++.+.|+++++++.
T Consensus       109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~  188 (617)
T PTZ00139        109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEYF  188 (617)
T ss_pred             HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEeceE
Confidence            11110     00 000111110  000       0000        0000001  1246788899999899999999999


Q ss_pred             EEEEEEe-CCeEE---E-EEcCC--eEEEcCeEEEccCCChHH
Q 009427          228 VSSICTY-ENAAV---L-LLAEG--KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       228 V~~i~~~-~~gv~---v-~~~~G--~~i~a~lVV~AdG~~S~v  263 (535)
                      ++++..+ ++.+.   + ...+|  ..+.|+.||+|+|.+...
T Consensus       189 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  231 (617)
T PTZ00139        189 ALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA  231 (617)
T ss_pred             EEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence            9998873 33332   2 22355  368999999999988643

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.77  E-value=1e-07  Score=105.84  Aligned_cols=154  Identities=16%  Similarity=0.183  Sum_probs=85.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCC---CcEEEEcccCCCCCcccc---c----cc------HH-HHHHHHHc--CCCChH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKG---LRVAIVERNTLKGREQEW---N----IS------RK-ELLELVES--GILVED  169 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G---~~V~liEr~~~~~~~~~~---~----is------~~-~l~~L~~l--Gl~~~~  169 (535)
                      ++|||||| |+||+++|+.+++.|   .+|+||||....+....+   .    +.      .. .++.....  |+.+++
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~~   84 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQD   84 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCHH
Confidence            58999999 999999999999998   899999998654432211   0    11      11 11111111  232322


Q ss_pred             hHHHHHhh-----hc-CCCcccccc--cCcc-------eeeecccccc--CHHHHHHHHHHHHHh-CCCEEEeCceEEEE
Q 009427          170 DIDEATAT-----KF-NPNRCGFEG--KGEI-------WVEDILNLGV--SPAKLIEIVKKRFIS-LGGVIFEGYSVSSI  231 (535)
Q Consensus       170 ~~~~~~~~-----~~-~~~~~~~~~--~~~~-------~~~~~~~~~v--~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i  231 (535)
                      .+...+..     .| ..-.+.|..  .+..       ....+..+.-  ....+.+.|.+++.+ .|+++++++.++++
T Consensus        85 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~L  164 (577)
T PRK06069         85 AVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTSL  164 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEEEE
Confidence            22211110     00 000111110  0000       0000000000  124477788888766 58999999999999


Q ss_pred             EEeCCeEE---E-EEcCCe--EEEcCeEEEccCCChHH
Q 009427          232 CTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       232 ~~~~~gv~---v-~~~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      ..+++.++   + ...+|+  .+.|+.||+|||.++.+
T Consensus       165 i~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~  202 (577)
T PRK06069        165 IVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL  202 (577)
T ss_pred             EEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence            87655432   2 223553  58999999999998654

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.76  E-value=9e-08  Score=106.57  Aligned_cols=154  Identities=14%  Similarity=0.214  Sum_probs=86.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c----------cHH-HHHHHHHc--CCCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I----------SRK-ELLELVES--GILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i----------s~~-~l~~L~~l--Gl~~~~~~~  172 (535)
                      ++|||||| |.+|+++|+.+++.|.+|+||||....+....+.   +          +.. .++.....  ++.+++.++
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~   91 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIE   91 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHH
Confidence            69999999 9999999999999999999999986433321110   1          111 11122221  232322221


Q ss_pred             HHHhh-----hc-CCCcccccc--cCc-------cee--------eecccccc--CHHHHHHHHHHHHHhCCCEEEeCce
Q 009427          173 EATAT-----KF-NPNRCGFEG--KGE-------IWV--------EDILNLGV--SPAKLIEIVKKRFISLGGVIFEGYS  227 (535)
Q Consensus       173 ~~~~~-----~~-~~~~~~~~~--~~~-------~~~--------~~~~~~~v--~~~~l~~~L~~~a~~~G~~i~~~~~  227 (535)
                      .....     .+ ..-.+.|..  .+.       .+.        ..+..+..  .-..+...|.+.+.+.|+++++++.
T Consensus        92 ~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~~~~~  171 (598)
T PRK09078         92 YMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFFIEYF  171 (598)
T ss_pred             HHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEEEeEE
Confidence            11100     00 000011110  000       000        00000000  1245788898889888999999999


Q ss_pred             EEEEEEeCCe-EE---E-EEcCCe--EEEcCeEEEccCCChHH
Q 009427          228 VSSICTYENA-AV---L-LLAEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       228 V~~i~~~~~g-v~---v-~~~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      ++++..++++ ++   + ...+|.  .+.|+.||.|+|.+...
T Consensus       172 v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        172 ALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             EEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence            9999876533 32   2 123553  68999999999998754

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.76  E-value=2e-07  Score=104.16  Aligned_cols=154  Identities=16%  Similarity=0.156  Sum_probs=87.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc----------cHH-HHHHHHHc--CCCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI----------SRK-ELLELVES--GILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i----------s~~-~l~~L~~l--Gl~~~~~~~  172 (535)
                      ++|||||| |.||+++|+.+++.|.+|+||||....+....+   .+          +.. .++.....  |+.+++.++
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~  129 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ  129 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence            58999999 999999999999999999999998654432111   00          111 12222222  233333222


Q ss_pred             HHHhh-----hc-CCCcccccccCc---------cee--------eeccccc--cCHHHHHHHHHHHHHhCCCEEEeCce
Q 009427          173 EATAT-----KF-NPNRCGFEGKGE---------IWV--------EDILNLG--VSPAKLIEIVKKRFISLGGVIFEGYS  227 (535)
Q Consensus       173 ~~~~~-----~~-~~~~~~~~~~~~---------~~~--------~~~~~~~--v~~~~l~~~L~~~a~~~G~~i~~~~~  227 (535)
                      ..+..     .+ ..-.+.|.....         .+.        ..+..+.  -.-..+.+.|.+++.+.|+++++++.
T Consensus       130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~  209 (635)
T PLN00128        130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYF  209 (635)
T ss_pred             HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeE
Confidence            11110     00 000111211000         000        0000000  01245778898888888999999999


Q ss_pred             EEEEEEeCCe-EE---EEE-cCC--eEEEcCeEEEccCCChHH
Q 009427          228 VSSICTYENA-AV---LLL-AEG--KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       228 V~~i~~~~~g-v~---v~~-~~G--~~i~a~lVV~AdG~~S~v  263 (535)
                      ++++..++++ +.   +.. .+|  ..+.|+.||.|||.+...
T Consensus       210 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        210 ALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA  252 (635)
T ss_pred             EEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence            9998776333 32   211 245  368999999999998754

>PLN02815 L-aspartate oxidase

Probab=98.74  E-value=1.3e-07  Score=104.89  Aligned_cols=158  Identities=16%  Similarity=0.199  Sum_probs=88.4

Q ss_pred             CCCCCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHcC--CCChH
Q 009427          105 DKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I--------SR-KELLELVESG--ILVED  169 (535)
Q Consensus       105 ~~~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~lG--l~~~~  169 (535)
                      +....++|||||| |.+|+++|+.+++.| +|+||||....+++..+.   +        +. ..++.....|  +.+++
T Consensus        24 ~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~  102 (594)
T PLN02815         24 DESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEE  102 (594)
T ss_pred             cCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHH
Confidence            3345579999999 999999999999999 999999987644322211   1        11 1222222222  32332


Q ss_pred             hHHHHHh-----hhc-CCCccccccc--C-------cceeeeccc--cccCHHHHHHHHHHHHHhC-CCEEEeCceEEEE
Q 009427          170 DIDEATA-----TKF-NPNRCGFEGK--G-------EIWVEDILN--LGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSI  231 (535)
Q Consensus       170 ~~~~~~~-----~~~-~~~~~~~~~~--~-------~~~~~~~~~--~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i  231 (535)
                      .++..+.     ..| ....+.|...  +       ..+...+..  ....-..+...|.+++.+. |+++++++.++++
T Consensus       103 lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~L  182 (594)
T PLN02815        103 TVRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDL  182 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhee
Confidence            2221111     000 0001111100  0       000000100  0112345778888888765 8899999999999


Q ss_pred             EEeCCe----EE-EE---EcCCe--EEEcCeEEEccCCChHH
Q 009427          232 CTYENA----AV-LL---LAEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       232 ~~~~~g----v~-v~---~~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      ..++++    ++ +.   ..+|.  .+.|+.||.|+|.+..+
T Consensus       183 i~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  224 (594)
T PLN02815        183 LTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI  224 (594)
T ss_pred             eeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence            875432    22 11   22453  57999999999988754

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=2.2e-07  Score=104.10  Aligned_cols=55  Identities=9%  Similarity=0.213  Sum_probs=41.3

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE---cCC--eEEEcCeEEEccCCChHH
Q 009427          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEG--KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       209 ~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~---~~G--~~i~a~lVV~AdG~~S~v  263 (535)
                      +.|.+.+.+.|+++++++.++++..+++.++ |.+   .+|  ..+.|+.||+|+|.++.+
T Consensus       174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~  234 (640)
T PRK07573        174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV  234 (640)
T ss_pred             HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence            5666677788999999999999987655433 222   245  368999999999998754

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=2.6e-07  Score=102.68  Aligned_cols=154  Identities=16%  Similarity=0.177  Sum_probs=86.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc----------cHH-HHHHHHHc--CCCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI----------SRK-ELLELVES--GILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i----------s~~-~l~~L~~l--Gl~~~~~~~  172 (535)
                      ++|||||| |.||+++|+.+++.|.+|+||||....++...+   .+          +.. .++...+.  |+.+++.++
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~   86 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE   86 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999 999999999999999999999998544332111   01          111 11222221  232332222


Q ss_pred             HHHhh-----hc-CCCccccccc--Cc-------ceee-------ecccccc--CHHHHHHHHHHHHHhCCCEEEeCceE
Q 009427          173 EATAT-----KF-NPNRCGFEGK--GE-------IWVE-------DILNLGV--SPAKLIEIVKKRFISLGGVIFEGYSV  228 (535)
Q Consensus       173 ~~~~~-----~~-~~~~~~~~~~--~~-------~~~~-------~~~~~~v--~~~~l~~~L~~~a~~~G~~i~~~~~V  228 (535)
                      ..+..     .| ..-.+.|...  +.       .+..       .+..+..  .-..+...|.+++.+.|+++++++.+
T Consensus        87 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~  166 (588)
T PRK08958         87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA  166 (588)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcEE
Confidence            11110     00 0001111100  00       0000       0000001  12467788888888889999999999


Q ss_pred             EEEEEeCCe-EE---E-EEcCC--eEEEcCeEEEccCCChHH
Q 009427          229 SSICTYENA-AV---L-LLAEG--KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       229 ~~i~~~~~g-v~---v-~~~~G--~~i~a~lVV~AdG~~S~v  263 (535)
                      +++..++++ ++   + ...+|  ..+.|+.||.|+|.++.+
T Consensus       167 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        167 LDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_pred             EEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence            999875443 22   2 12345  358999999999998754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.73  E-value=1.5e-07  Score=103.08  Aligned_cols=113  Identities=24%  Similarity=0.341  Sum_probs=81.1

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      ...|||+||| ||+|+++|..|++.|++|+|+|.. +++...  +       .   .++      .     .+. .   +
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~-~GG~~~--~-------~---~~~------~-----~~~-~---~  261 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER-IGGQVK--D-------T---VGI------E-----NLI-S---V  261 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCccc--c-------C---cCc------c-----ccc-c---c
Confidence            3469999999 999999999999999999999753 222100  0       0   010      0     000 0   0


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                               .    ......+.+.+.+.+.+.|++++.+++|+++..+++.+.+.+++|.++.+|.+|.|+|+..
T Consensus       262 ---------~----~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       262 ---------P----YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             ---------C----CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence                     0    0123456677777788889999999999999877667778887788899999999999753

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.72  E-value=2.1e-07  Score=104.05  Aligned_cols=153  Identities=17%  Similarity=0.249  Sum_probs=84.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---c----c-------c-HHHHHHHHHc--CCCChHhH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---N----I-------S-RKELLELVES--GILVEDDI  171 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~----i-------s-~~~l~~L~~l--Gl~~~~~~  171 (535)
                      ++|||||| |.||+++|+.+++.|.+|+||||....+.+..+   +    +       + ...++.....  ++.+.+.+
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~~v   87 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWRMA   87 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHHHH
Confidence            68999999 999999999999999999999998654332111   0    0       1 1112222221  23232222


Q ss_pred             HHHHh------hhcCCCcccccc--cCcc-------eeeecccc--ccCHHHHHHHHHHHHHhC--------C-----CE
Q 009427          172 DEATA------TKFNPNRCGFEG--KGEI-------WVEDILNL--GVSPAKLIEIVKKRFISL--------G-----GV  221 (535)
Q Consensus       172 ~~~~~------~~~~~~~~~~~~--~~~~-------~~~~~~~~--~v~~~~l~~~L~~~a~~~--------G-----~~  221 (535)
                      +..+.      .....-.+.|..  .+..       +...+...  .-....+.+.|.+.+.+.        |     ++
T Consensus        88 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~  167 (626)
T PRK07803         88 ELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIK  167 (626)
T ss_pred             HHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCceE
Confidence            11110      000000111110  0000       00000000  011245777788777666        6     89


Q ss_pred             EEeCceEEEEEEeCCeEE---E-EEcCCe--EEEcCeEEEccCCChH
Q 009427          222 IFEGYSVSSICTYENAAV---L-LLAEGK--ILSSHLIIDAMGNFSP  262 (535)
Q Consensus       222 i~~~~~V~~i~~~~~gv~---v-~~~~G~--~i~a~lVV~AdG~~S~  262 (535)
                      ++.++.|+++..+++.+.   + ...+|+  .+.|+.||+|+|.++.
T Consensus       168 i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~  214 (626)
T PRK07803        168 VFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK  214 (626)
T ss_pred             EEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence            999999999987655332   1 123453  6899999999998543

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.72  E-value=1.9e-07  Score=100.60  Aligned_cols=138  Identities=20%  Similarity=0.280  Sum_probs=72.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc-cccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW-NISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~-~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      +|||+||| ||+|+++|+.++++|++|+|+|++.+++..... .+....+-.-.  .+  ...++..  ..|.   +...
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a--~~--~~~~~~~--~~~g---~~~~   72 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGS--TF--GGEFEDA--AGYG---WTVG   72 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHH--HH--HHHHhhh--HhcC---cCCC
Confidence            59999999 999999999999999999999997665532111 11111111000  00  0000000  0010   0000


Q ss_pred             ccCcceeeeccccc-cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~~~~~~~~~-v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                       ..+.-........ -....+.+.+.+.+.+.|++++.+ +++.+  +.+.+.+. .+|+++++|.||+|+|...
T Consensus        73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v--~~~~v~v~-~~g~~~~~d~lIiATGs~p  142 (446)
T TIGR01424        73 -KARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLV--GPNTVEVL-QDGTTYTAKKILIAVGGRP  142 (446)
T ss_pred             -CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEEEEe-cCCeEEEcCEEEEecCCcC
Confidence             0000000000000 001223344555566779998866 55555  34445443 3577899999999999653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.72  E-value=2.1e-07  Score=102.61  Aligned_cols=152  Identities=16%  Similarity=0.088  Sum_probs=86.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC-CCcccc---cc--------cH-HHHHHHHHc--CCCChHhHHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK-GREQEW---NI--------SR-KELLELVES--GILVEDDIDE  173 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~-~~~~~~---~i--------s~-~~l~~L~~l--Gl~~~~~~~~  173 (535)
                      ++|||||| |.+|+++|+.+ +.|.+|+||||.+.. ++...+   .+        +. ..++.+...  ++.+++.++.
T Consensus         7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~   85 (543)
T PRK06263          7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI   85 (543)
T ss_pred             ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Confidence            58999999 99999999999 899999999998642 221111   01        11 112222222  2323322221


Q ss_pred             HHhh-----hc-CCCcccccccCc---------ceeeeccccc--cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC
Q 009427          174 ATAT-----KF-NPNRCGFEGKGE---------IWVEDILNLG--VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN  236 (535)
Q Consensus       174 ~~~~-----~~-~~~~~~~~~~~~---------~~~~~~~~~~--v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~  236 (535)
                      .+..     .| ..-.+.|.....         .....+..+.  .....+...|.+.+.+.|+++++++.++++..+++
T Consensus        86 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~  165 (543)
T PRK06263         86 LVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDEN  165 (543)
T ss_pred             HHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC
Confidence            1110     00 000011110000         0000000000  11346778888888888999999999999987665


Q ss_pred             e-EE---EEE-cCCe--EEEcCeEEEccCCChH
Q 009427          237 A-AV---LLL-AEGK--ILSSHLIIDAMGNFSP  262 (535)
Q Consensus       237 g-v~---v~~-~~G~--~i~a~lVV~AdG~~S~  262 (535)
                      + ++   +.. .+|+  .+.|+.||+|+|.++.
T Consensus       166 ~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        166 REVIGAIFLDLRNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             cEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence            4 32   111 3453  6899999999999864

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.71  E-value=3.7e-07  Score=101.57  Aligned_cols=154  Identities=16%  Similarity=0.210  Sum_probs=85.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc-------cHHH----HHHHHHc--CCCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI-------SRKE----LLELVES--GILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i-------s~~~----l~~L~~l--Gl~~~~~~~  172 (535)
                      ++|||||| |.+|+++|+.+++.|.+|+||||....++...+   ++       ....    ++.....  ++.+++.++
T Consensus        12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v~   91 (591)
T PRK07057         12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAIE   91 (591)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHHH
Confidence            68999999 999999999999999999999998543322111   01       1111    1111121  232322222


Q ss_pred             HHHh-----hhc-CCCcccccc--cCcc-------eee-------eccccc--cCHHHHHHHHHHHHHhCCCEEEeCceE
Q 009427          173 EATA-----TKF-NPNRCGFEG--KGEI-------WVE-------DILNLG--VSPAKLIEIVKKRFISLGGVIFEGYSV  228 (535)
Q Consensus       173 ~~~~-----~~~-~~~~~~~~~--~~~~-------~~~-------~~~~~~--v~~~~l~~~L~~~a~~~G~~i~~~~~V  228 (535)
                      ....     ..+ ..-.+.|..  .+..       +..       .+..+.  -.-..+...|.+.+.+.|++++.++.+
T Consensus        92 ~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~~~~  171 (591)
T PRK07057         92 FMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVEWMA  171 (591)
T ss_pred             HHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEEeCcEE
Confidence            1110     000 000111110  0000       000       000000  012457888888888889999999999


Q ss_pred             EEEEEeCCe-E---EE-EEcCCe--EEEcCeEEEccCCChHH
Q 009427          229 SSICTYENA-A---VL-LLAEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       229 ~~i~~~~~g-v---~v-~~~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      +++..++++ +   .+ ...+|+  .+.|+.||.|+|.++.+
T Consensus       172 ~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  213 (591)
T PRK07057        172 LDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI  213 (591)
T ss_pred             EEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence            999875433 2   22 122453  58899999999998754

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.67  E-value=2.3e-07  Score=102.53  Aligned_cols=110  Identities=16%  Similarity=0.271  Sum_probs=76.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .|||+||| ||+|+++|..|+++|++|+|||++.+++....   .          .         .+ ..| |+.     
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~---~----------~---------~i-~~~-pg~-----   54 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITI---T----------S---------EV-VNY-PGI-----   54 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEe---c----------c---------cc-ccC-CCC-----
Confidence            59999999 99999999999999999999998754332100   0          0         00 000 000     


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                 ..+....+.+.+.+.+.+.|++++ +++|+++..+++...+.+.++ ++.++.||+|+|+..
T Consensus        55 -----------~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p  114 (555)
T TIGR03143        55 -----------LNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASP  114 (555)
T ss_pred             -----------cCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCcc
Confidence                       012234566777778888899875 678998876555566766555 589999999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.66  E-value=5.8e-07  Score=99.91  Aligned_cols=60  Identities=17%  Similarity=0.190  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---EEEcCCe-EEEc-CeEEEccCCChH
Q 009427          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGK-ILSS-HLIIDAMGNFSP  262 (535)
Q Consensus       203 ~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~---v~~~~G~-~i~a-~lVV~AdG~~S~  262 (535)
                      +...+.+.|.+.+++.|++++.+++|+++..+++.++   +...++. +++| +.||.|+|.++.
T Consensus       215 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        215 NGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            3456778899999999999999999999987655432   3322343 5889 999999999975

>PRK08275 putative oxidoreductase; Provisional

Probab=98.66  E-value=5.9e-07  Score=99.32  Aligned_cols=154  Identities=14%  Similarity=0.192  Sum_probs=85.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCccc-cc---c---------cHH-HHHHHHHc--CCCChHh
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQE-WN---I---------SRK-ELLELVES--GILVEDD  170 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~-~~---i---------s~~-~l~~L~~l--Gl~~~~~  170 (535)
                      ++|||||| |.||++||+.+++.  |.+|+||||....+.... ..   +         +.. .++.+...  |+.+.+.
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~   88 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA   88 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence            58999999 99999999999987  789999999975322111 10   1         111 11111111  2222222


Q ss_pred             HHHHHh------hhcCCCcccccccCc-ceeeec-c---cc--cc-CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC
Q 009427          171 IDEATA------TKFNPNRCGFEGKGE-IWVEDI-L---NL--GV-SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN  236 (535)
Q Consensus       171 ~~~~~~------~~~~~~~~~~~~~~~-~~~~~~-~---~~--~v-~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~  236 (535)
                      ++....      .......+.|..... .+.... .   .+  .. ....+.+.|.+.+.+.|+++++++.|+++..+++
T Consensus        89 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~  168 (554)
T PRK08275         89 VYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDAD  168 (554)
T ss_pred             HHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC
Confidence            221111      000000111111000 000000 0   00  00 1235778898889889999999999999987633


Q ss_pred             e-EE---E-EEcCCe--EEEcCeEEEccCCChHH
Q 009427          237 A-AV---L-LLAEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       237 g-v~---v-~~~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      + +.   + ...+|+  .+.|+.||+|+|.++.+
T Consensus       169 g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~  202 (554)
T PRK08275        169 GRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL  202 (554)
T ss_pred             CeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence            3 22   2 123453  58999999999998643

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.66  E-value=3.6e-07  Score=99.89  Aligned_cols=151  Identities=18%  Similarity=0.243  Sum_probs=84.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHc--CCCChHhHHHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I--------SR-KELLELVES--GILVEDDIDEA  174 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~l--Gl~~~~~~~~~  174 (535)
                      ++|||||| |.||+++|+.+++ |.+|+||||....+.+..+.   +        +. ..++.+...  |+.+++.++..
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~   81 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL   81 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence            58999999 9999999999986 99999999997654432211   1        11 122222222  23233222211


Q ss_pred             Hhh------hcCCCccccccc--Cc-------ceeeecc-c--cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC
Q 009427          175 TAT------KFNPNRCGFEGK--GE-------IWVEDIL-N--LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN  236 (535)
Q Consensus       175 ~~~------~~~~~~~~~~~~--~~-------~~~~~~~-~--~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~  236 (535)
                      +..      ......+.|...  +.       .+...+. .  .......+.+.|.+++. .|+++++++.|+++..+++
T Consensus        82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g  160 (510)
T PRK08071         82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIENG  160 (510)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecCC
Confidence            110      000001111100  00       0000000 0  01123457788887775 6899999999999976655


Q ss_pred             eEE-EEE--cCCe--EEEcCeEEEccCCChH
Q 009427          237 AAV-LLL--AEGK--ILSSHLIIDAMGNFSP  262 (535)
Q Consensus       237 gv~-v~~--~~G~--~i~a~lVV~AdG~~S~  262 (535)
                      .+. +.+  .+|+  .+.|+.||+|+|.++.
T Consensus       161 ~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        161 RCIGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             EEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence            433 222  2342  6899999999999875

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.65  E-value=4.8e-07  Score=100.46  Aligned_cols=56  Identities=25%  Similarity=0.309  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE--cCCe-EEEcC-eEEEccCCCh
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL--AEGK-ILSSH-LIIDAMGNFS  261 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~--~~G~-~i~a~-lVV~AdG~~S  261 (535)
                      .+.+.|.+++++.|++++.+++|+++..+++.++ |.+  .++. .+.++ .||.|+|.++
T Consensus       215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS  275 (574)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence            4666788888889999999999999987766433 223  2343 47785 7999999887

>PRK12839 hypothetical protein; Provisional

Probab=98.64  E-value=6.6e-07  Score=99.05  Aligned_cols=60  Identities=18%  Similarity=0.174  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe----EEEEEcCCe-EE-EcCeEEEccCCChH
Q 009427          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK-IL-SSHLIIDAMGNFSP  262 (535)
Q Consensus       203 ~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g----v~v~~~~G~-~i-~a~lVV~AdG~~S~  262 (535)
                      +...+...|.+.+.+.|++|+.++.|+++..++++    +++...+|. .+ .++.||+|+|.++.
T Consensus       212 ~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~  277 (572)
T PRK12839        212 NGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN  277 (572)
T ss_pred             cHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence            45667888999999999999999999999765433    223333443 34 45899999999875

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.63  E-value=3.5e-07  Score=100.83  Aligned_cols=154  Identities=19%  Similarity=0.295  Sum_probs=84.4

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHc--CCCChHhHH
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I--------SR-KELLELVES--GILVEDDID  172 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~l--Gl~~~~~~~  172 (535)
                      +.++|||||| |.||+++|+.++ .|.+|+||||....+.+..+.   +        +. ..++.+...  ++.+++.++
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~   85 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR   85 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            3479999999 999999999987 499999999987644332111   1        11 122222222  232332222


Q ss_pred             HHHhh-----hc-CCCcccccccC--------cceeeecccccc--CHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeC
Q 009427          173 EATAT-----KF-NPNRCGFEGKG--------EIWVEDILNLGV--SPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYE  235 (535)
Q Consensus       173 ~~~~~-----~~-~~~~~~~~~~~--------~~~~~~~~~~~v--~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~  235 (535)
                      ..+..     .| ....+.|....        ..+...+....-  .-..+...|.+.+.+. |+++++++.++++..++
T Consensus        86 ~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~  165 (553)
T PRK07395         86 FLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEP  165 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheecC
Confidence            11110     00 00011111000        000000000000  1245778888888654 89999999999998763


Q ss_pred             --CeEE-E-EEcCCe--EEEcCeEEEccCCChH
Q 009427          236 --NAAV-L-LLAEGK--ILSSHLIIDAMGNFSP  262 (535)
Q Consensus       236 --~gv~-v-~~~~G~--~i~a~lVV~AdG~~S~  262 (535)
                        +.++ + ...+|.  .+.|+.||.|+|.++.
T Consensus       166 ~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~~  198 (553)
T PRK07395        166 ETGRCQGISLLYQGQITWLRAGAVILATGGGGQ  198 (553)
T ss_pred             CCCEEEEEEEEECCeEEEEEcCEEEEcCCCCcc
Confidence              2222 1 123453  4899999999998643

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.63  E-value=7.7e-07  Score=98.96  Aligned_cols=153  Identities=16%  Similarity=0.237  Sum_probs=85.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---cc-------cHH----HHHHHHHcC--CCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---NI-------SRK----ELLELVESG--ILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~i-------s~~----~l~~L~~lG--l~~~~~~~  172 (535)
                      ++|||||| |++|+++|+.+++. .+|+|+||....+....+   .+       ...    ..+.....|  +.+++.++
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v~   83 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAAE   83 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHH
Confidence            68999999 99999999999987 999999998654332111   00       001    111111112  33332222


Q ss_pred             HHHh-----hhc-CCCcccccc--cCc-------ceee-------ecccccc--CHHHHHHHHHHHHHhCCCEEEeCceE
Q 009427          173 EATA-----TKF-NPNRCGFEG--KGE-------IWVE-------DILNLGV--SPAKLIEIVKKRFISLGGVIFEGYSV  228 (535)
Q Consensus       173 ~~~~-----~~~-~~~~~~~~~--~~~-------~~~~-------~~~~~~v--~~~~l~~~L~~~a~~~G~~i~~~~~V  228 (535)
                      ..+.     ..+ ..-.+.|..  .+.       .+..       .+..+..  ....+.+.|.+.+.+.|+++++++.|
T Consensus        84 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~~~v  163 (583)
T PRK08205         84 IMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVEFFNEFYV  163 (583)
T ss_pred             HHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCEEEeCCEE
Confidence            1111     000 000111110  000       0000       0000111  23567888999898889999999999


Q ss_pred             EEEEEeC----CeE---EE-EEcCCe--EEEcCeEEEccCCChHH
Q 009427          229 SSICTYE----NAA---VL-LLAEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       229 ~~i~~~~----~gv---~v-~~~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      +++..++    +.+   ++ ...+|+  .+.|+.||+|+|.++.+
T Consensus       164 ~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  208 (583)
T PRK08205        164 LDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV  208 (583)
T ss_pred             EEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence            9997654    322   22 223453  58999999999998754

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.63  E-value=6e-07  Score=99.85  Aligned_cols=154  Identities=13%  Similarity=0.132  Sum_probs=84.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c-----------cH-HHHHHHHHcC--CCChHhH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I-----------SR-KELLELVESG--ILVEDDI  171 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i-----------s~-~~l~~L~~lG--l~~~~~~  171 (535)
                      .+|||||| |+||+++|+.+++.|.+|+||||....+....+.   +           +. ..++.....|  +.+++.+
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v   82 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV   82 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence            47999999 9999999999999999999999986544322111   0           11 1122222222  3232222


Q ss_pred             HHHHhh-----hc-CCCcccccccC---------cceeeecccc--ccCHHHHHHHHHHHHHhCC----CEEEeCceEEE
Q 009427          172 DEATAT-----KF-NPNRCGFEGKG---------EIWVEDILNL--GVSPAKLIEIVKKRFISLG----GVIFEGYSVSS  230 (535)
Q Consensus       172 ~~~~~~-----~~-~~~~~~~~~~~---------~~~~~~~~~~--~v~~~~l~~~L~~~a~~~G----~~i~~~~~V~~  230 (535)
                      +..+..     .+ ..-.+.|....         ..+...+..+  ......+...|.+.+.+.+    +++++++.+++
T Consensus        83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~  162 (589)
T PRK08641         83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLG  162 (589)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEE
Confidence            211110     00 00011111000         0010011000  0123457777877776543    67999999999


Q ss_pred             EEEeCCeEE----EEE-cCCe--EEEcCeEEEccCCChHH
Q 009427          231 ICTYENAAV----LLL-AEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       231 i~~~~~gv~----v~~-~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      +..++++.+    +.. .+++  .+.|+.||.|||.++.+
T Consensus       163 Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  202 (589)
T PRK08641        163 AVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGII  202 (589)
T ss_pred             EEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCC
Confidence            987544322    221 1343  58999999999998754

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.62  E-value=3.6e-07  Score=99.09  Aligned_cols=37  Identities=32%  Similarity=0.581  Sum_probs=34.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      .|||+||| ||+|+++|..|++.|++|+|||+..+++.
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~   41 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGT   41 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcc
Confidence            69999999 99999999999999999999999866553

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.62  E-value=3.1e-07  Score=99.32  Aligned_cols=37  Identities=46%  Similarity=0.658  Sum_probs=34.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      +|||+||| ||+|+++|..|+++|++|+|+|+..+++.
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~   41 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGT   41 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccc
Confidence            69999999 99999999999999999999999876553

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.59  E-value=2.5e-06  Score=94.33  Aligned_cols=58  Identities=14%  Similarity=0.169  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCCe--EEEc-CeEEEccCCChHH
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSS-HLIIDAMGNFSPV  263 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~-~~G~--~i~a-~lVV~AdG~~S~v  263 (535)
                      .+...|.+.+++.|++++.+++|+++..+++.++ |.. .+|+  .+.+ +-||.|+|.++..
T Consensus       218 ~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n  280 (564)
T PRK12845        218 ALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD  280 (564)
T ss_pred             HHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence            4556788888889999999999999986544332 112 2342  4666 5899999998754

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.59  E-value=4.4e-07  Score=98.35  Aligned_cols=37  Identities=38%  Similarity=0.382  Sum_probs=33.1

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc-CCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKG  145 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~-~~~~  145 (535)
                      .+||||||| ||+|+.+|..|++.|++|+|||+. .+++
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG   41 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG   41 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence            369999999 999999999999999999999986 3443

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.57  E-value=4e-07  Score=98.11  Aligned_cols=37  Identities=32%  Similarity=0.495  Sum_probs=34.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      +|||+||| ||+|+.+|..|++.|++|+|+||+.+++.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~   39 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGT   39 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccc
Confidence            59999999 99999999999999999999999876553

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.57  E-value=9.5e-07  Score=90.79  Aligned_cols=112  Identities=13%  Similarity=0.133  Sum_probs=73.7

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      ..+||+||| ||+|+++|..|+++|++|+++|+...++...                . .. .     ...| |..    
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~----------------~-~~-~-----~~~~-~~~----   56 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLT----------------T-TT-E-----VENW-PGD----   56 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCcee----------------c-Cc-e-----ECCC-CCC----
Confidence            368999999 9999999999999999999999654332100                0 00 0     0000 000    


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                 ...++...+.+.+.+.+...+.++..+ +|++++..++.+.++.++ .++.+|.||.|+|...
T Consensus        57 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~-~~~~~d~vilAtG~~~  117 (321)
T PRK10262         57 -----------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDS-GEYTCDALIIATGASA  117 (321)
T ss_pred             -----------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecC-CEEEECEEEECCCCCC
Confidence                       001233445566777777777777665 577777666666666533 3689999999999764

>PRK06370 mercuric reductase; Validated

Probab=98.57  E-value=8.3e-07  Score=96.02  Aligned_cols=38  Identities=37%  Similarity=0.575  Sum_probs=34.7

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      .+||||||| ||+|+++|+.|++.|++|+|||+..+++.
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~   42 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGT   42 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCc
Confidence            369999999 99999999999999999999999876654

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.56  E-value=8.9e-07  Score=99.50  Aligned_cols=59  Identities=15%  Similarity=0.219  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe---EEEEE-cCCe--EEEcCeEEEccCCChHH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA---AVLLL-AEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g---v~v~~-~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      ..+...|.+.+.+.|+++++++.++++..+++.   +++.. .+|+  .+.|+.||.|+|.++.+
T Consensus       158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~  222 (657)
T PRK08626        158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRI  222 (657)
T ss_pred             HHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence            346667888888899999999999999876654   33332 3553  57899999999988754

>PRK06116 glutathione reductase; Validated

Probab=98.56  E-value=6e-07  Score=96.78  Aligned_cols=36  Identities=39%  Similarity=0.642  Sum_probs=33.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      +|||+||| ||+|+++|+.|+++|++|+|||+..+++
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG   40 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGG   40 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhh
Confidence            69999999 9999999999999999999999986554

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.56  E-value=9.3e-07  Score=98.17  Aligned_cols=37  Identities=32%  Similarity=0.486  Sum_probs=33.7

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      .++|||||| |.+|+++|+.++++|.+|+||||....+
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g   47 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG   47 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence            369999999 9999999999999999999999986544

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.56  E-value=8.5e-07  Score=97.13  Aligned_cols=36  Identities=39%  Similarity=0.481  Sum_probs=32.6

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      .++|||||| | +|+++|+.+++.|.+|+||||....+
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G   42 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG   42 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            379999999 9 99999999999999999999986533

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.56  E-value=1.6e-06  Score=86.47  Aligned_cols=64  Identities=19%  Similarity=0.288  Sum_probs=47.7

Q ss_pred             cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---------CC-----------eEEEEEcCC--eEEEcCeEEEccCC
Q 009427          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---------EN-----------AAVLLLAEG--KILSSHLIIDAMGN  259 (535)
Q Consensus       202 v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~---------~~-----------gv~v~~~~G--~~i~a~lVV~AdG~  259 (535)
                      +|+-.|+..+++++...|+.+. +.+|++++.+         ++           +++|...|+  +.+++.++|.|.|+
T Consensus       240 fdpw~LLs~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa  318 (509)
T KOG2853|consen  240 FDPWALLSGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGA  318 (509)
T ss_pred             cCHHHHHHHHHHHhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCc
Confidence            7899999999999999998876 4577777654         22           234444443  46899999999999


Q ss_pred             ChHHHHH
Q 009427          260 FSPVVKQ  266 (535)
Q Consensus       260 ~S~v~~~  266 (535)
                      ||.-...
T Consensus       319 ~s~QvAr  325 (509)
T KOG2853|consen  319 WSGQVAR  325 (509)
T ss_pred             cHHHHHH
Confidence            9965444

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.54  E-value=1e-06  Score=95.31  Aligned_cols=138  Identities=22%  Similarity=0.251  Sum_probs=72.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc-CCCCCcccc-cccHHHHHHHHHcCCCChHhHHHHH-hhhcCCCccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKGREQEW-NISRKELLELVESGILVEDDIDEAT-ATKFNPNRCG  185 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~-~~~~~~~~~-~is~~~l~~L~~lGl~~~~~~~~~~-~~~~~~~~~~  185 (535)
                      +|||+||| ||+|+.+|+.|++.|++|+||||+ .+++....+ .+....+....       ..+.... ...|.    .
T Consensus         5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~-------~~~~~~~~~~~~~----~   73 (461)
T PRK05249          5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAV-------LRLIGFNQNPLYS----S   73 (461)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHH-------HHHHHHhhhhhhc----c
Confidence            69999999 999999999999999999999996 454431111 12212111100       0000000 00110    0


Q ss_pred             ccccCcceeeeccccc-cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe--EEEcCeEEEccCCCh
Q 009427          186 FEGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGNFS  261 (535)
Q Consensus       186 ~~~~~~~~~~~~~~~~-v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~--~i~a~lVV~AdG~~S  261 (535)
                      +......-........ --...+.+.+.+.+.+.|++++.++ +..+  +.+.+.|...+|.  ++++|.||+|+|...
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~--~~~~~~v~~~~g~~~~~~~d~lviATGs~p  149 (461)
T PRK05249         74 YRVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGR-ARFV--DPHTVEVECPDGEVETLTADKIVIATGSRP  149 (461)
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence            0000000000000000 0001123345555667789888764 3333  4556667666664  699999999999653

>PRK14694 putative mercuric reductase; Provisional

Probab=98.54  E-value=1e-06  Score=95.54  Aligned_cols=38  Identities=29%  Similarity=0.500  Sum_probs=34.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      .+|||+||| ||+|+++|..|++.|++|+|||++.+++.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGt   43 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGT   43 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccc
Confidence            379999999 99999999999999999999999866553

>PTZ00058 glutathione reductase; Provisional

Probab=98.54  E-value=6.2e-07  Score=98.76  Aligned_cols=38  Identities=34%  Similarity=0.510  Sum_probs=34.6

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      .+||||||| |++|.++|..+++.|.+|+|||++.+++.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGt   85 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGT   85 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccccccc
Confidence            369999999 99999999999999999999999866654

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.54  E-value=9e-07  Score=96.90  Aligned_cols=152  Identities=17%  Similarity=0.220  Sum_probs=83.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC-CCcccc---cc--------cH-HHHHHHHHc--CCCChHhHH
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK-GREQEW---NI--------SR-KELLELVES--GILVEDDID  172 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~-~~~~~~---~i--------s~-~~l~~L~~l--Gl~~~~~~~  172 (535)
                      .++|||||| |.+|+++|+.++  |.+|+||||...+ ++...+   .+        +. ..++.+...  |+.+++.++
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v~   85 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVAA   85 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence            368999999 999999999997  5799999999762 222211   11        11 112222222  233332222


Q ss_pred             HHHhh-----hc-CCCcccccc--cCcc-------eeeec-cc--cccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEE
Q 009427          173 EATAT-----KF-NPNRCGFEG--KGEI-------WVEDI-LN--LGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICT  233 (535)
Q Consensus       173 ~~~~~-----~~-~~~~~~~~~--~~~~-------~~~~~-~~--~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~  233 (535)
                      ..+..     .| ....+.|..  .+..       +...+ ..  ..-....+.+.|.+.+.+. |++++.++.|+++..
T Consensus        86 ~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~  165 (513)
T PRK07512         86 LITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLLV  165 (513)
T ss_pred             HHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhheee
Confidence            11110     00 000111110  0000       00000 00  0012356788888888775 899999999999876


Q ss_pred             eCCeEE-EEE-cCC--eEEEcCeEEEccCCChH
Q 009427          234 YENAAV-LLL-AEG--KILSSHLIIDAMGNFSP  262 (535)
Q Consensus       234 ~~~gv~-v~~-~~G--~~i~a~lVV~AdG~~S~  262 (535)
                      +++.++ +.+ .++  ..+.|+.||.|+|.++.
T Consensus       166 ~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~  198 (513)
T PRK07512        166 DDGAVAGVLAATAGGPVVLPARAVVLATGGIGG  198 (513)
T ss_pred             cCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcC
Confidence            555332 222 223  26899999999999764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.54  E-value=2.2e-06  Score=94.83  Aligned_cols=57  Identities=12%  Similarity=0.201  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCC--eEEEcC-eEEEccCCChH
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEG--KILSSH-LIIDAMGNFSP  262 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~-~~G--~~i~a~-lVV~AdG~~S~  262 (535)
                      .+...|.+.+++.|++++.+++|+++..+++.++ |.. .++  ..+.|+ -||.|+|.+..
T Consensus       209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~  270 (557)
T PRK07843        209 ALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH  270 (557)
T ss_pred             HHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence            3556677777888999999999999987655443 222 234  358896 69999998764

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.52  E-value=1.1e-06  Score=97.87  Aligned_cols=30  Identities=33%  Similarity=0.395  Sum_probs=28.9

Q ss_pred             EEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ||||| |++|++||+.+++.|.+|+||||..
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence            79999 9999999999999999999999986

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.50  E-value=1.4e-06  Score=96.71  Aligned_cols=59  Identities=19%  Similarity=0.164  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCCe--EEEc-CeEEEccCCChH
Q 009427          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEGK--ILSS-HLIIDAMGNFSP  262 (535)
Q Consensus       204 ~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~-~~G~--~i~a-~lVV~AdG~~S~  262 (535)
                      ...+...|.+++++.|++++.+++|+++..+++.++ |.+ .+|+  ++.| +.||.|+|.++.
T Consensus       220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        220 GNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence            345778899999999999999999999976655433 222 2343  5776 789999999875

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.49  E-value=4.1e-07  Score=88.28  Aligned_cols=127  Identities=21%  Similarity=0.372  Sum_probs=76.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC-CCCCccc--------------cc----ccHHHHHHHHHcCCCChHhH
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT-LKGREQE--------------WN----ISRKELLELVESGILVEDDI  171 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~-~~~~~~~--------------~~----is~~~l~~L~~lGl~~~~~~  171 (535)
                      +|+||| |++|+++|+.|+..|++|+|+||.. ++++-..              .+    .-.+.++.+.+.|+.     
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV-----   77 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLV-----   77 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCce-----
Confidence            699999 9999999999999999999999983 2221100              00    001223333333332     


Q ss_pred             HHHHhhhcCCCcccccccC------c-ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC
Q 009427          172 DEATATKFNPNRCGFEGKG------E-IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE  244 (535)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~  244 (535)
                           ..|.+..-.+...+      + .|+-..   +      ...|.+ +.....+|..+++|+.+...++.+++++++
T Consensus        78 -----~~W~~~~~~~~~~~~~~~~d~~pyvg~p---g------msalak-~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~  142 (331)
T COG3380          78 -----DVWTPAVWTFTGDGSPPRGDEDPYVGEP---G------MSALAK-FLATDLTVVLETRVTEVARTDNDWTLHTDD  142 (331)
T ss_pred             -----eeccccccccccCCCCCCCCCCccccCc---c------hHHHHH-HHhccchhhhhhhhhhheecCCeeEEEecC
Confidence                 22222211121110      0 021111   0      122333 444567888999999999999999999976


Q ss_pred             C-eEEEcCeEEEccC
Q 009427          245 G-KILSSHLIIDAMG  258 (535)
Q Consensus       245 G-~~i~a~lVV~AdG  258 (535)
                      | +...+|.||+|-=
T Consensus       143 g~~~~~~d~vvla~P  157 (331)
T COG3380         143 GTRHTQFDDVVLAIP  157 (331)
T ss_pred             CCcccccceEEEecC
Confidence            6 5678999998854

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.48  E-value=3.1e-06  Score=93.21  Aligned_cols=154  Identities=16%  Similarity=0.210  Sum_probs=85.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHc--CCCChHhHHHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I--------SR-KELLELVES--GILVEDDIDEA  174 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~l--Gl~~~~~~~~~  174 (535)
                      ++|||||| |.+|+++|+.+++. .+|+||||....++...+.   +        +. ..++.....  |+.+++.++..
T Consensus         8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~   86 (536)
T PRK09077          8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRFI   86 (536)
T ss_pred             cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHHH
Confidence            68999999 99999999999987 8999999987544332211   1        11 122222222  33333322221


Q ss_pred             Hhh-----hc-CCCcccccccC------c-------ceeeeccccc--cCHHHHHHHHHHHHHhC-CCEEEeCceEEEEE
Q 009427          175 TAT-----KF-NPNRCGFEGKG------E-------IWVEDILNLG--VSPAKLIEIVKKRFISL-GGVIFEGYSVSSIC  232 (535)
Q Consensus       175 ~~~-----~~-~~~~~~~~~~~------~-------~~~~~~~~~~--v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~  232 (535)
                      +..     .| ....+.|....      .       .+...+.-..  -.-..+...|.+++.+. ++++++++.++++.
T Consensus        87 ~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li  166 (536)
T PRK09077         87 AENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLI  166 (536)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeee
Confidence            110     00 00011111000      0       0000000000  01245677788888765 79999999999987


Q ss_pred             EeC------CeEE-EEE---cCCe--EEEcCeEEEccCCChHHH
Q 009427          233 TYE------NAAV-LLL---AEGK--ILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       233 ~~~------~gv~-v~~---~~G~--~i~a~lVV~AdG~~S~v~  264 (535)
                      .++      +.++ +..   .+|+  .+.|+.||+|+|.++.+.
T Consensus       167 ~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~  210 (536)
T PRK09077        167 TSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVY  210 (536)
T ss_pred             ecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCC
Confidence            653      3332 222   2343  589999999999987543

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.47  E-value=2.4e-06  Score=94.38  Aligned_cols=33  Identities=36%  Similarity=0.580  Sum_probs=32.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ++|||||| |.+|+++|+.+++.|.+|+||||..
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            69999999 9999999999999999999999987

>PRK09897 hypothetical protein; Provisional

Probab=98.46  E-value=2.5e-06  Score=93.19  Aligned_cols=149  Identities=15%  Similarity=0.129  Sum_probs=78.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCccccccc--HHHHH-HHHHcCCC-ChHhHHHHHhh----hc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWNIS--RKELL-ELVESGIL-VEDDIDEATAT----KF  179 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~is--~~~l~-~L~~lGl~-~~~~~~~~~~~----~~  179 (535)
                      .+|+||| |++|+++|..|++.+  ++|+|+|+....+....|...  .+.+. ......+. ....+..-...    .+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            4799999 999999999999875  589999996433322222210  01100 00000000 00111100000    00


Q ss_pred             CCCcccccc-cCcceeeeccccccCHHHHHHHHHHHHHhCC--CEEEeCceEEEEEEeCCeEEEEEcC-CeEEEcCeEEE
Q 009427          180 NPNRCGFEG-KGEIWVEDILNLGVSPAKLIEIVKKRFISLG--GVIFEGYSVSSICTYENAAVLLLAE-GKILSSHLIID  255 (535)
Q Consensus       180 ~~~~~~~~~-~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G--~~i~~~~~V~~i~~~~~gv~v~~~~-G~~i~a~lVV~  255 (535)
                      ......... ....|.+ +..++---....+.+.+.+.+.|  +.++.+++|+++..+++++.+.+.+ |..+.||.||.
T Consensus        82 ~~~g~~~~~l~~~~f~P-R~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL  160 (534)
T PRK09897         82 QRYGVKKETLHDRQFLP-RILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI  160 (534)
T ss_pred             HhcCCcceeecCCccCC-eecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence            000000000 0111211 11111111233344556666666  6788899999998888888888755 46799999999


Q ss_pred             ccCCC
Q 009427          256 AMGNF  260 (535)
Q Consensus       256 AdG~~  260 (535)
                      |+|+.
T Consensus       161 AtGh~  165 (534)
T PRK09897        161 ATGHV  165 (534)
T ss_pred             CCCCC
Confidence            99974

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.45  E-value=5e-06  Score=91.98  Aligned_cols=58  Identities=16%  Similarity=0.311  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE-cCC--eEEEcC-eEEEccCCChH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL-AEG--KILSSH-LIIDAMGNFSP  262 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~-~~G--~~i~a~-lVV~AdG~~S~  262 (535)
                      ..+...|.+++++.|++++.+++|+++..+++.++ |.. .+|  .++.|+ -||+|+|.++.
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence            34667788889899999999999999987665432 222 244  357885 79999998875

>PLN02507 glutathione reductase

Probab=98.45  E-value=2.9e-06  Score=92.56  Aligned_cols=31  Identities=35%  Similarity=0.460  Sum_probs=30.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVER  140 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr  140 (535)
                      +||||||| ||+|+.+|..+++.|.+|+|||+
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            69999999 99999999999999999999997

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.45  E-value=3.7e-06  Score=90.88  Aligned_cols=36  Identities=42%  Similarity=0.639  Sum_probs=33.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      ||||||| |++|+++|..|++.|.+|+|||++.+++.
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~~GG~   38 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGT   38 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence            8999999 99999999999999999999999666553

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.43  E-value=1.6e-06  Score=92.33  Aligned_cols=133  Identities=17%  Similarity=0.194  Sum_probs=85.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccH-------HHHHHHHHcCCCChHhHHHHHhhhcCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISR-------KELLELVESGILVEDDIDEATATKFNP  181 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~-------~~l~~L~~lGl~~~~~~~~~~~~~~~~  181 (535)
                      .-+|+||| |++||++|..|.+.|++|+++||...-++  .|....       .-++.| .+.+  ..+   +  ..|. 
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG--lW~y~~~~~~~~ss~Y~~l-~tn~--pKe---~--~~~~-   74 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG--LWKYTENVEVVHSSVYKSL-RTNL--PKE---M--MGYS-   74 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc--eEeecCcccccccchhhhh-hccC--Chh---h--hcCC-
Confidence            36899999 99999999999999999999999854332  333210       001111 0011  000   0  0111 


Q ss_pred             CcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeC-CeEEEEEcCC----eEEEcCeEE
Q 009427          182 NRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE-NAAVLLLAEG----KILSSHLII  254 (535)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~-~gv~v~~~~G----~~i~a~lVV  254 (535)
                       ...|       ..+...+-.+...+++.|..-|...+.  .|.++++|..+.... +.+.|.+.++    .+.-+|.||
T Consensus        75 -dfpf-------~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~Vv  146 (448)
T KOG1399|consen   75 -DFPF-------PERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVV  146 (448)
T ss_pred             -CCCC-------cccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEE
Confidence             0111       111112223556888899988888765  688899888887777 5788877543    467899999


Q ss_pred             EccCCCh
Q 009427          255 DAMGNFS  261 (535)
Q Consensus       255 ~AdG~~S  261 (535)
                      +|+|++.
T Consensus       147 VctGh~~  153 (448)
T KOG1399|consen  147 VCTGHYV  153 (448)
T ss_pred             EcccCcC
Confidence            9999984

>PLN02546 glutathione reductase

Probab=98.43  E-value=3.6e-06  Score=92.76  Aligned_cols=32  Identities=28%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVER  140 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr  140 (535)
                      .+|||+||| ||+|..+|..++++|.+|+|||+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            369999999 99999999999999999999996

>TIGR02053 MerA mercuric reductase

Probab=98.41  E-value=1.3e-06  Score=94.62  Aligned_cols=36  Identities=33%  Similarity=0.538  Sum_probs=33.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      ||||||| ||+|+++|..|+++|++|+|||++.+++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~   37 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGT   37 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCC
Confidence            7999999 99999999999999999999999876554

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.40  E-value=1e-05  Score=84.91  Aligned_cols=68  Identities=12%  Similarity=0.085  Sum_probs=56.7

Q ss_pred             ccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe-EEEEEcC---C--eEEEcCeEEEccCCChHHHHH
Q 009427          199 NLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA-AVLLLAE---G--KILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~g-v~v~~~~---G--~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      +..||-..|.+.|.+.+.+. |++++.+++|++|.+.+|+ +.|++.+   |  .+++|++|++..|.+|-...|
T Consensus       175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLq  249 (488)
T PF06039_consen  175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQ  249 (488)
T ss_pred             CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHH
Confidence            34578889999999998887 8999999999999998877 8887642   2  579999999999988866655

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.40  E-value=2.6e-06  Score=92.24  Aligned_cols=36  Identities=42%  Similarity=0.587  Sum_probs=32.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcc-cCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVER-NTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr-~~~~~  145 (535)
                      +|||+||| ||+|+++|..++++|++|+|||+ ..+++
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG   40 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG   40 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceee
Confidence            59999999 99999999999999999999997 44554

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.40  E-value=2.9e-06  Score=92.13  Aligned_cols=31  Identities=42%  Similarity=0.593  Sum_probs=30.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVER  140 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr  140 (535)
                      +|||+||| ||+|+++|+.+++.|.+|+|||+
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            69999999 99999999999999999999998

>PRK13748 putative mercuric reductase; Provisional

Probab=98.39  E-value=3.3e-06  Score=93.66  Aligned_cols=37  Identities=32%  Similarity=0.484  Sum_probs=34.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      +||||||| ||+|+++|..|++.|.+|+|||++.+++.
T Consensus        98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~  135 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGT  135 (561)
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceee
Confidence            69999999 99999999999999999999999866543

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.38  E-value=9.2e-06  Score=97.01  Aligned_cols=39  Identities=28%  Similarity=0.300  Sum_probs=34.6

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      ..++|||||| |.+|++||+.+++.|.+|+||||....++
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG  446 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG  446 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence            4469999999 99999999999999999999999865443

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.37  E-value=4e-06  Score=90.16  Aligned_cols=33  Identities=30%  Similarity=0.624  Sum_probs=31.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +||||||| ||+|+++|+.|+++|++|+|||+..
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~   36 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN   36 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence            59999999 9999999999999999999999973

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.37  E-value=6.3e-06  Score=88.54  Aligned_cols=33  Identities=42%  Similarity=0.670  Sum_probs=31.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +|||+||| ||+|+++|..|++.|++|+||||..
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence            59999999 9999999999999999999999974

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.37  E-value=1.4e-05  Score=88.98  Aligned_cols=151  Identities=20%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             cEEEEc-chHHHHHHHHHH----HCCCcEEEEcccCCCCCccc--c--ccc-----------HH-HHHHHHH--cCCCCh
Q 009427          112 DVIVCG-GTLGIFIATALS----FKGLRVAIVERNTLKGREQE--W--NIS-----------RK-ELLELVE--SGILVE  168 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LA----r~G~~V~liEr~~~~~~~~~--~--~is-----------~~-~l~~L~~--lGl~~~  168 (535)
                      |||||| |.||++||+.++    +.|.+|+||||....+....  +  .+.           .. .++....  .|+.++
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d~   80 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVRE   80 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCcH
Confidence            899999 999999999998    77999999999865432210  0  110           11 1111111  123222


Q ss_pred             HhHHHHHhh-----hc-CCCcccccc---cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC---C
Q 009427          169 DDIDEATAT-----KF-NPNRCGFEG---KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE---N  236 (535)
Q Consensus       169 ~~~~~~~~~-----~~-~~~~~~~~~---~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~---~  236 (535)
                      +.++..+..     .+ ..-.+.|..   .+...........+....+.+.+...+.+.++++++++.++++..++   +
T Consensus        81 ~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G  160 (614)
T TIGR02061        81 DLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN  160 (614)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC
Confidence            222211110     00 000111210   01000000000001123444555555666678999999999998754   2


Q ss_pred             e---EEE-EEcCCe--EEEcCeEEEccCCChH
Q 009427          237 A---AVL-LLAEGK--ILSSHLIIDAMGNFSP  262 (535)
Q Consensus       237 g---v~v-~~~~G~--~i~a~lVV~AdG~~S~  262 (535)
                      .   +++ ...+|+  .+.|+.||.|+|.++.
T Consensus       161 rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       161 RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             eEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence            2   222 223453  5899999999999864

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.36  E-value=1.9e-05  Score=83.30  Aligned_cols=151  Identities=20%  Similarity=0.247  Sum_probs=89.4

Q ss_pred             cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCC--eEEEcCeEEEccCCC-hHHHHHhCCCCCCCCCc
Q 009427          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEG--KILSSHLIIDAMGNF-SPVVKQAFPAGSGPLDR  277 (535)
Q Consensus       202 v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G--~~i~a~lVV~AdG~~-S~v~~~~~p~~~~~~~~  277 (535)
                      +-..+|.+.|.+.+++.|++++.+++|+++..++++++ +.+.++  .+++||.||.|+|+| |.-....+....     
T Consensus       260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~-----  334 (419)
T TIGR03378       260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIY-----  334 (419)
T ss_pred             CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCcee-----
Confidence            33567889999999999999999999999988777666 444454  479999999999999 764433222211     


Q ss_pred             eeEEEEEecCCCCCCChHHHH-HHHhhhccCccCCCCCccchhcchhccccCCCCCCCCc--cCCCeeEeecCCCccccc
Q 009427          278 TTYMFTYIDPQAGSPKLEELL-ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPA--AFNRILQFGDASGIQSPV  354 (535)
Q Consensus       278 ~~~~~~y~~~~~~~~~l~~~~-~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl~~--~~~rvlliGDAA~~~~P~  354 (535)
                       .-.|.- ++. ..++-..++ ..||.-.|-           .+  +|+.......|...  ..+++.++|-.-+-.+|+
T Consensus       335 -Epif~L-~v~-~~~~r~~W~~~~ff~~~p~-----------~~--~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~  398 (419)
T TIGR03378       335 -EPIFGL-DVL-QLPDRDQWYQHRFFAPHPF-----------MQ--FGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPI  398 (419)
T ss_pred             -eeccCC-CcC-CCcchhhhcchhhcCCChh-----------hh--cCceEccccCccCCCcccccceEechhhcCCChH
Confidence             111111 110 111111111 122221111           00  12211111112111  158999999988777774


Q ss_pred             -ccccchHHHHHHHHHHHHH
Q 009427          355 -SFGGFGSLTRHLGRLSTGV  373 (535)
Q Consensus       355 -~G~Gi~~al~da~~La~~l  373 (535)
                       -|+|-+.++..+..+++.|
T Consensus       399 ~~gcG~GVai~Ta~~aa~~i  418 (419)
T TIGR03378       399 FEGCGSGVAVSTALHAAEQI  418 (419)
T ss_pred             hcCCCchhHHHHHHHHHHhh
Confidence             5788888888888777754

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.34  E-value=2e-06  Score=92.31  Aligned_cols=131  Identities=23%  Similarity=0.276  Sum_probs=75.0

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCc-EEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLR-VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      .+.+||+||| |++|+++|++|.++|.. ++|+||+.-.++  .|+..+  .+.+   -+-+....     ..|.  ...
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg--~W~~~r--y~~l---~~~~p~~~-----~~~~--~~p   71 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG--TWRYNR--YPGL---RLDSPKWL-----LGFP--FLP   71 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC--cchhcc--CCce---EECCchhe-----eccC--CCc
Confidence            3479999999 99999999999999999 999999853222  232110  0000   00000000     0010  000


Q ss_pred             ccccCcceeeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeC--CeEEEEEcCCeE--EEcCeEEEccCC
Q 009427          186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE--NAAVLLLAEGKI--LSSHLIIDAMGN  259 (535)
Q Consensus       186 ~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~--~gv~v~~~~G~~--i~a~lVV~AdG~  259 (535)
                      |.     +......    ...+...+.+.+.+.+.  .+..++.|+.+..++  +.++|++++|.+  +.||.||.|+|.
T Consensus        72 ~~-----~~~~~~~----~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~  142 (443)
T COG2072          72 FR-----WDEAFAP----FAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH  142 (443)
T ss_pred             cC-----CcccCCC----cccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence            00     0000000    11144556666666664  455566666655444  478898877644  569999999998


Q ss_pred             Ch
Q 009427          260 FS  261 (535)
Q Consensus       260 ~S  261 (535)
                      ++
T Consensus       143 ~~  144 (443)
T COG2072         143 LS  144 (443)
T ss_pred             CC
Confidence            66

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.33  E-value=1.2e-05  Score=87.19  Aligned_cols=138  Identities=17%  Similarity=0.204  Sum_probs=73.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc-ccHHHHHHHHHcCCCChHhHHHHHhhhcC--C---Ccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVESGILVEDDIDEATATKFN--P---NRC  184 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~-is~~~l~~L~~lGl~~~~~~~~~~~~~~~--~---~~~  184 (535)
                      |||||| |++|+.+|..++++|.+|+|||+..+++..-.+. +....+-.-.  .+  ...+..  ...+.  .   ...
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a--~~--~~~~~~--~~~~g~~~~~~~~~   76 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATA--EV--RTELRR--AAELGIRFIDDGEA   76 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHH--HH--HHHHHH--HHhCCcccccCccc
Confidence            799999 9999999999999999999999987655421111 1111110000  00  000000  00110  0   000


Q ss_pred             cccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEE--EeCCeEEEEEcCCe--EEEcCeEEEccCCC
Q 009427          185 GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSIC--TYENAAVLLLAEGK--ILSSHLIIDAMGNF  260 (535)
Q Consensus       185 ~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~--~~~~gv~v~~~~G~--~i~a~lVV~AdG~~  260 (535)
                      .+...   .......-.  ...+.+.+.+.+.+.|++++.++ ++.+.  .+++.+.|...+|+  ++.+|.||+|+|..
T Consensus        77 ~~~~~---~~~~~~~~~--~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~  150 (466)
T PRK07845         77 RVDLP---AVNARVKAL--AAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGAS  150 (466)
T ss_pred             ccCHH---HHHHHHHHH--HHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCC
Confidence            00000   000000000  01122345566667899998764 33332  34566777776664  79999999999975


Q ss_pred             h
Q 009427          261 S  261 (535)
Q Consensus       261 S  261 (535)
                      .
T Consensus       151 p  151 (466)
T PRK07845        151 P  151 (466)
T ss_pred             C
Confidence            4

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.33  E-value=9.1e-06  Score=87.17  Aligned_cols=58  Identities=19%  Similarity=0.169  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEE--EEEc-CCeEEEcCeEEEccCCChH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV--LLLA-EGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~gv~--v~~~-~G~~i~a~lVV~AdG~~S~  262 (535)
                      ..+.+.|.+.+++.|++++.+++|+++..++ ++.+  +... ++.++.|+.||+|+|.++.
T Consensus       123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA  184 (432)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence            4678889999999999999999999998763 3333  2332 3357999999999998764

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.32  E-value=1e-06  Score=93.19  Aligned_cols=137  Identities=19%  Similarity=0.208  Sum_probs=83.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC--CCC---Cccccccc----HHHHHHHHHcCCCChHhHHHHHhhhc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT--LKG---REQEWNIS----RKELLELVESGILVEDDIDEATATKF  179 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~--~~~---~~~~~~is----~~~l~~L~~lGl~~~~~~~~~~~~~~  179 (535)
                      .||||||| |-||+-||++.||.|.+++|+--+.  ++.   ++..+++.    .+|++.|   |-.-....+.      
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDAL---GG~Mg~~~D~------   74 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDAL---GGLMGKAADK------   74 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhc---cchHHHhhhh------
Confidence            59999999 9999999999999999999986653  211   11111111    1234443   3211111111      


Q ss_pred             CCCccccc--c--cCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCe--EEEEEcCCeEEEcCe
Q 009427          180 NPNRCGFE--G--KGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENA--AVLLLAEGKILSSHL  252 (535)
Q Consensus       180 ~~~~~~~~--~--~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~g--v~v~~~~G~~i~a~l  252 (535)
                        ..+.|.  .  +++.  .......+|...+.+.+.+.+.... ..++ ...|+++..+++.  +-|.+.+|..+.|+.
T Consensus        75 --~~IQ~r~LN~sKGPA--Vra~RaQaDk~~Y~~~mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~a  149 (621)
T COG0445          75 --AGIQFRMLNSSKGPA--VRAPRAQADKWLYRRAMKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKA  149 (621)
T ss_pred             --cCCchhhccCCCcch--hcchhhhhhHHHHHHHHHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCE
Confidence              011110  0  1111  1112344677777788888887664 4555 5578888776653  346677899999999


Q ss_pred             EEEccCCC
Q 009427          253 IIDAMGNF  260 (535)
Q Consensus       253 VV~AdG~~  260 (535)
                      ||.++|.+
T Consensus       150 VVlTTGTF  157 (621)
T COG0445         150 VVLTTGTF  157 (621)
T ss_pred             EEEeeccc
Confidence            99999976

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.30  E-value=5.6e-06  Score=89.65  Aligned_cols=37  Identities=35%  Similarity=0.529  Sum_probs=34.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      +|||+||| ||+|+++|..|++.|.+|+|||++.+++.
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~   41 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGV   41 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence            59999999 99999999999999999999999866654

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.29  E-value=6.5e-06  Score=86.56  Aligned_cols=154  Identities=16%  Similarity=0.261  Sum_probs=90.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c----------cHHHHHHHHH-cCCCChHhHHHHHh
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I----------SRKELLELVE-SGILVEDDIDEATA  176 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i----------s~~~l~~L~~-lGl~~~~~~~~~~~  176 (535)
                      ||+||| |+|||++|+.|++. ++|+||-|.+....+..|.   |          ..+..+.|.. .|+.+++.++..+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            899999 99999999999998 9999999997765444332   1          1122223321 24555443332221


Q ss_pred             hh-----c-CCCcccccccCc---------ceeeec-ccc-ccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCC--
Q 009427          177 TK-----F-NPNRCGFEGKGE---------IWVEDI-LNL-GVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYEN--  236 (535)
Q Consensus       177 ~~-----~-~~~~~~~~~~~~---------~~~~~~-~~~-~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~--  236 (535)
                      ..     + -...+.|..+.+         .+...+ +.. .---..+.+.|.+++.+ .++++++++.+.++..+++  
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~  167 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG  167 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence            00     0 000111211110         111100 000 01124677888888876 4889999999999988777  


Q ss_pred             --eEEEEEcCC--eEEEcCeEEEccCCChHHHHH
Q 009427          237 --AAVLLLAEG--KILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       237 --gv~v~~~~G--~~i~a~lVV~AdG~~S~v~~~  266 (535)
                        |+.+...++  ..+.|+.||.|+|..+.+-..
T Consensus       168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~  201 (518)
T COG0029         168 VAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAY  201 (518)
T ss_pred             EeEEEEecCCCeEEEEecCeEEEecCCCcccccc
Confidence              333332323  578999999999988766443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.27  E-value=2.4e-05  Score=91.27  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=32.8

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      .++|||||| |.+|+++|+.+++.|.+|+||||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            368999999 99999999999999999999999865

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.25  E-value=5.9e-06  Score=87.03  Aligned_cols=113  Identities=19%  Similarity=0.091  Sum_probs=65.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc---------ccccccHHHHHHHHHcCCCChHhHHHHHhhhcC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE---------QEWNISRKELLELVESGILVEDDIDEATATKFN  180 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~---------~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~  180 (535)
                      -||+||| |++|+.+|+.||++|++|+|+|+.+.....         ...+.+......+...|++. ++++..-...+.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~-~em~~lgsl~~~   81 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLK-EEMRRLGSLIME   81 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchH-HHHHHhcchhee
Confidence            4899999 999999999999999999999987543211         11122333333334446543 222211001111


Q ss_pred             CCcccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEE
Q 009427          181 PNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSIC  232 (535)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~  232 (535)
                      ..       .....+......+|+..+.+.|.+++.+. +++++ ..+|+++.
T Consensus        82 aa-------d~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~  126 (436)
T PRK05335         82 AA-------DAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP  126 (436)
T ss_pred             cc-------cccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence            10       00000111123578888999999998776 56776 56787773

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.25  E-value=1.5e-05  Score=80.68  Aligned_cols=32  Identities=34%  Similarity=0.586  Sum_probs=29.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKG-LRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~  142 (535)
                      ||+|||| |++|+.+|..|++.| .+|+|||++.
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~   34 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGP   34 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccc
Confidence            7999999 999999999999997 7999999983

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.24  E-value=7e-06  Score=75.35  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=35.1

Q ss_pred             CCCEEE-eCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          218 LGGVIF-EGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       218 ~G~~i~-~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      .|+++. ...+|+++...+++..+.+.+|..+.+|.||.|+|+
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            355433 467999999988998888889999999999999995

>PRK07233 hypothetical protein; Provisional

Probab=98.23  E-value=2.5e-05  Score=83.32  Aligned_cols=56  Identities=20%  Similarity=0.185  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      ..+.+.|.+.+.+.|++|+.+++|++|+.+++++++...++++++||.||.|....
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence            35778888888888999999999999988777766555567789999999999853

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.22  E-value=1.6e-05  Score=85.95  Aligned_cols=36  Identities=39%  Similarity=0.632  Sum_probs=33.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      +||||||| ||+|+++|..|++.|.+|+|||++.+++
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~GG   39 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGG   39 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccc
Confidence            59999999 9999999999999999999999975554

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.22  E-value=5.2e-06  Score=91.17  Aligned_cols=151  Identities=21%  Similarity=0.318  Sum_probs=84.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc-------c---------cHH-HHHHHHHc--CCCChH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-------I---------SRK-ELLELVES--GILVED  169 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~-------i---------s~~-~l~~L~~l--Gl~~~~  169 (535)
                      ++|||||| |.||+.+|+.+++.|.+|+|+||....+++..+.       +         +.. .+......  ++-+++
T Consensus         6 ~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~dqd   85 (562)
T COG1053           6 EFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGDQD   85 (562)
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCCHH
Confidence            69999999 9999999999999999999999986554332110       0         111 11111111  122333


Q ss_pred             hHHHHHh---------hhcCCCcccccccCcce-------eeeccccc--cCHHHHHHHHHHHHHh-CCCEEEeCceEEE
Q 009427          170 DIDEATA---------TKFNPNRCGFEGKGEIW-------VEDILNLG--VSPAKLIEIVKKRFIS-LGGVIFEGYSVSS  230 (535)
Q Consensus       170 ~~~~~~~---------~~~~~~~~~~~~~~~~~-------~~~~~~~~--v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~  230 (535)
                      .++....         ..|........ .+.++       ...+..+.  ---..++..|.+++.+ .+.+++.+..+++
T Consensus        86 ~i~~~~~~ap~~v~~Le~~G~~f~r~~-~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~  164 (562)
T COG1053          86 AVEAFADEAPEAVDELEKWGVPFSRTE-DGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLD  164 (562)
T ss_pred             HHHHHHHhhHHHHHHHHHhCCCcccCC-CccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhh
Confidence            2222111         11110000000 01000       00000111  1124577888888887 4568899999999


Q ss_pred             EEEeCCe-EE----EEEcCC--eEEEcCeEEEccCCCh
Q 009427          231 ICTYENA-AV----LLLAEG--KILSSHLIIDAMGNFS  261 (535)
Q Consensus       231 i~~~~~g-v~----v~~~~G--~~i~a~lVV~AdG~~S  261 (535)
                      +..++++ +.    ....+|  ..++++.||.|+|...
T Consensus       165 l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g  202 (562)
T COG1053         165 LLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG  202 (562)
T ss_pred             heecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence            9876554 22    223445  3578999999999876

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.21  E-value=2.8e-06  Score=92.79  Aligned_cols=32  Identities=28%  Similarity=0.501  Sum_probs=30.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      +|||+||| ||+|+++|..|+++|.+|+|||+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            59999999 999999999999999999999973

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.21  E-value=5.4e-06  Score=90.80  Aligned_cols=130  Identities=23%  Similarity=0.286  Sum_probs=79.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCC------C-c
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNP------N-R  183 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~------~-~  183 (535)
                      .|+||| |++||++|..|.+.|++|+++||..--|+  .|......     +.|.          ...|..      . .
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG--~W~~~~~~-----~~g~----------~~~y~sl~~n~sk~~   65 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGG--LWRYTENP-----EDGR----------SSVYDSLHTNTSKEM   65 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSG--GGCHSTTC-----CCSE----------GGGSTT-B-SS-GGG
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCc--cCeeCCcC-----CCCc----------cccccceEEeeCchH
Confidence            599999 99999999999999999999999854332  33211000     0000          011110      0 1


Q ss_pred             ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC-----eEEEEEcC-Ce--EEEcCeE
Q 009427          184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN-----AAVLLLAE-GK--ILSSHLI  253 (535)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~~-----gv~v~~~~-G~--~i~a~lV  253 (535)
                      ..|.+  -.+..+...+ .+...+.+.|..-|...+.  .|.++|+|++++..++     .+.|++.+ |+  +-..|.|
T Consensus        66 ~~fsd--fp~p~~~p~f-~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~V  142 (531)
T PF00743_consen   66 MAFSD--FPFPEDYPDF-PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAV  142 (531)
T ss_dssp             SCCTT--S-HCCCCSSS-EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEE
T ss_pred             hcCCC--cCCCCCCCCC-CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeE
Confidence            11111  0000111112 3567888899998988775  6889999999987653     57787753 42  3567999


Q ss_pred             EEccCCCh
Q 009427          254 IDAMGNFS  261 (535)
Q Consensus       254 V~AdG~~S  261 (535)
                      |+|+|.++
T Consensus       143 vvatG~~~  150 (531)
T PF00743_consen  143 VVATGHFS  150 (531)
T ss_dssp             EEEE-SSS
T ss_pred             EEcCCCcC
Confidence            99999986

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.19  E-value=2.4e-05  Score=63.24  Aligned_cols=78  Identities=26%  Similarity=0.333  Sum_probs=60.5

Q ss_pred             EEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccCc
Q 009427          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE  191 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (535)
                      |+||| |+.|+-+|..|++.|.+|+|+|+.+....                 .+ +                        
T Consensus         2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-----------------~~-~------------------------   39 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-----------------GF-D------------------------   39 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-----------------TS-S------------------------
T ss_pred             EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-----------------hc-C------------------------
Confidence            89999 99999999999999999999998832110                 00 0                        


Q ss_pred             ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC
Q 009427          192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG  245 (535)
Q Consensus       192 ~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G  245 (535)
                                   ..+...+.+.+++.|+++++++.+++++.+++++.|+++||
T Consensus        40 -------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   40 -------------PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             -------------HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             -------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence                         11124456667778999999999999999888877777775

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=2.3e-06  Score=85.65  Aligned_cols=109  Identities=25%  Similarity=0.306  Sum_probs=75.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEE-cccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIV-ERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~li-Er~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .|||+||| ||+|.++|++.||+|+|.-|+ ||.  ++.         -++.+   ++      +..+...+.       
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerf--GGQ---------vldT~---~I------ENfIsv~~t-------  263 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERF--GGQ---------VLDTM---GI------ENFISVPET-------  263 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhh--CCe---------ecccc---ch------hheeccccc-------
Confidence            59999999 999999999999999998776 543  221         12222   22      222221111       


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~---~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                     +-.+|...|.+..++..+.+..-.++++++..   ++-+.|++++|-.++++-||.|+|+.
T Consensus       264 ---------------eGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         264 ---------------EGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             ---------------cchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence                           12345567777777778877776677776543   34577888899999999999999974

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.18  E-value=1.4e-05  Score=87.00  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=30.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      +||||||| ||+|+.+|+.+++.|.+|+|||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            59999999 999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14727 putative mercuric reductase; Provisional

Probab=98.18  E-value=1.8e-05  Score=86.10  Aligned_cols=37  Identities=27%  Similarity=0.400  Sum_probs=33.3

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc-CCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKG  145 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~-~~~~  145 (535)
                      .+||||||| |++|+++|..|++.|.+|+|||++ .+++
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG   53 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG   53 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee
Confidence            369999999 999999999999999999999997 4544

>PRK07846 mycothione reductase; Reviewed

Probab=98.18  E-value=6e-06  Score=89.02  Aligned_cols=35  Identities=34%  Similarity=0.645  Sum_probs=29.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      +||||||| ||+|..+|..  ..|.+|+|||++.+++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGt   36 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGT   36 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCc
Confidence            38999999 9999988865  46999999999877654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.16  E-value=1.8e-05  Score=85.98  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=30.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC-CCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK-GLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~  141 (535)
                      +||||||| ||+|..+|..+++. |.+|+|||++
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            69999999 99999999999997 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.16  E-value=2.4e-05  Score=83.69  Aligned_cols=37  Identities=41%  Similarity=0.661  Sum_probs=34.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc-CCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKGR  146 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~-~~~~~  146 (535)
                      +||+|||| ||+|..+|..+++.|.+|+|+|+. .+++.
T Consensus         4 ~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGt   42 (454)
T COG1249           4 EYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGT   42 (454)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCce
Confidence            69999999 999999999999999999999999 56554

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.14  E-value=2.1e-05  Score=82.82  Aligned_cols=65  Identities=15%  Similarity=0.110  Sum_probs=57.1

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~  264 (535)
                      +..+|+..++..|.+.+.+ |++++++++|++++.+++++.|++.+|..++|+.||+|+|.++...
T Consensus       129 ~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l  193 (381)
T TIGR03197       129 GGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQL  193 (381)
T ss_pred             CcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccc
Confidence            4568999999999999988 9999999999999887778888887777799999999999998543

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.13  E-value=1.2e-05  Score=79.78  Aligned_cols=67  Identities=18%  Similarity=0.204  Sum_probs=51.9

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-----EEEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-----AVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-----v~v~~~~G~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      ..+|-..+...+.+.+...|+.+..+-++.++..+.+.     ++|....+++++++.||-|+|-.|.-...
T Consensus       191 GIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa  262 (453)
T KOG2665|consen  191 GIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAA  262 (453)
T ss_pred             ceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHH
Confidence            34677788888999999999999999999999776653     33333336789999999999987755443

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.13  E-value=2.4e-05  Score=92.08  Aligned_cols=107  Identities=19%  Similarity=0.229  Sum_probs=68.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .+||+||| ||+|+++|+.|++.|++|+|+|+....++ +.+                .            .....    
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG-~~~----------------~------------~~~~~----  209 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGG-SLL----------------S------------EAETI----  209 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCC-eee----------------c------------ccccc----
Confidence            58999999 99999999999999999999998743322 000                0            00000    


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeE-EEE-E--------c----CC-eEEEcCe
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAA-VLL-L--------A----EG-KILSSHL  252 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv-~v~-~--------~----~G-~~i~a~l  252 (535)
                      .           +.+...+...+.+++.+. +++++.+++|.++..+ +.+ .+. .        .    +. .++.++.
T Consensus       210 ~-----------g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~-~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~  277 (985)
T TIGR01372       210 D-----------GKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDH-NTVGALERVTDHLDAPPKGVPRERLWRIRAKR  277 (985)
T ss_pred             C-----------CccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecC-CeEEEEEEeeeccccccCCccccceEEEEcCE
Confidence            0           012233445566666666 4889999999887421 111 111 0        0    11 2689999


Q ss_pred             EEEccCCCh
Q 009427          253 IIDAMGNFS  261 (535)
Q Consensus       253 VV~AdG~~S  261 (535)
                      ||+|+|+..
T Consensus       278 VILATGa~~  286 (985)
T TIGR01372       278 VVLATGAHE  286 (985)
T ss_pred             EEEcCCCCC
Confidence            999999754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.11  E-value=9.5e-06  Score=76.97  Aligned_cols=113  Identities=22%  Similarity=0.264  Sum_probs=66.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      |||||| |++|+++|..|++.|++|+|+|+....... ...+.    ..+         ..+..  ....          
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~-~~~~~----~~~---------~~~~~--~~~~----------   54 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN-SGCIP----SPL---------LVEIA--PHRH----------   54 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH-HSHHH----HHH---------HHHHH--HHHH----------
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc-ccccc----ccc---------ccccc--cccc----------
Confidence            799999 999999999999999999999876211000 00000    000         00000  0000          


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-----EEE---EcCCeEEEcCeEEEccCCCh
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-----VLL---LAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-----~v~---~~~G~~i~a~lVV~AdG~~S  261 (535)
                           .   ..  ..++. .+.+.+...+++++.++++.++......+     .+.   ..++.++.+|.||+|+|..+
T Consensus        55 -----~---~~--~~~~~-~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~  122 (201)
T PF07992_consen   55 -----E---FL--PARLF-KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP  122 (201)
T ss_dssp             -----H---HH--HHHHG-HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred             -----c---cc--ccccc-ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence                 0   00  00000 34444555688898889999997766532     221   22456899999999999543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.09  E-value=4.6e-05  Score=81.78  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=34.8

Q ss_pred             EEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          221 VIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       221 ~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      +|+.+++|++|+.+++++.|.+++|+++.||.||.|.-.
T Consensus       235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~  273 (451)
T PRK11883        235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH  273 (451)
T ss_pred             eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence            799999999999888888888878888999999999774

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.08  E-value=2.2e-05  Score=88.01  Aligned_cols=37  Identities=30%  Similarity=0.438  Sum_probs=33.3

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc--CCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN--TLKG  145 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~--~~~~  145 (535)
                      .+||||||| |++|..+|..+++.|.+|+|||++  .+++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGG  154 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGG  154 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccc
Confidence            479999999 999999999999999999999975  4554

>TIGR03452 mycothione_red mycothione reductase

Probab=98.08  E-value=1.6e-05  Score=85.71  Aligned_cols=35  Identities=34%  Similarity=0.600  Sum_probs=29.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      +||||||| ||+|..+|.  +..|.+|+|||++.+++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~~GGt   37 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGTFGGT   37 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCCCCCe
Confidence            59999999 999988864  446999999999877664

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.08  E-value=1.1e-05  Score=93.93  Aligned_cols=98  Identities=27%  Similarity=0.350  Sum_probs=65.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ..+|+||| ||||+++|+.|+++|++|+|+|+....++-            + ..|+               |.      
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~------------l-~yGI---------------P~------  351 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV------------L-RYGI---------------PE------  351 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce------------E-EccC---------------CC------
Confidence            47899999 999999999999999999999997422210            0 0021               00      


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                 +.. +..+++...+.+++.|++++.++.+-        ..+++++.....+|.||+|+|++.
T Consensus       352 -----------~rl-p~~vi~~~i~~l~~~Gv~f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~~  404 (944)
T PRK12779        352 -----------FRL-PNQLIDDVVEKIKLLGGRFVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAGL  404 (944)
T ss_pred             -----------CcC-hHHHHHHHHHHHHhhcCeEEEeEEec--------cEEeHHHhccccCCEEEEeCCCCC
Confidence                       000 12333445566677899998886542        224444444456899999999863

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.07  E-value=3.8e-05  Score=83.02  Aligned_cols=35  Identities=26%  Similarity=0.499  Sum_probs=32.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      +||||| ||+|+++|..+++.|.+|+||||+.+++.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~   37 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGT   37 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccccc
Confidence            699999 99999999999999999999999876553

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.04  E-value=0.00027  Score=75.24  Aligned_cols=151  Identities=17%  Similarity=0.217  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEE-EcCC--eEEEcCeEEEccCCChHHHHHhCC-CCCCCCCceeE
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLL-LAEG--KILSSHLIIDAMGNFSPVVKQAFP-AGSGPLDRTTY  280 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~-~~~G--~~i~a~lVV~AdG~~S~v~~~~~p-~~~~~~~~~~~  280 (535)
                      .++.+.|.+.+++.|++++.+++|++++.+++++++. ..+|  ..++||.||.|+|.+..   ..+- ..++   ...-
T Consensus       259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s---~GL~a~~~~---i~Ep  332 (422)
T PRK05329        259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFFS---GGLVAERDG---IREP  332 (422)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCccc---CceeccCCc---cccc
Confidence            4677888888888999999999999998777766543 3344  45899999999996421   1110 0000   0000


Q ss_pred             EEEEecCCCCCCChHHHH-HHHhhhccCccCCCCCccchhcchhccccCCCCCCC----CccCCCeeEeecCCCccccc-
Q 009427          281 MFTYIDPQAGSPKLEELL-ERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL----PAAFNRILQFGDASGIQSPV-  354 (535)
Q Consensus       281 ~~~y~~~~~~~~~l~~~~-~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl----~~~~~rvlliGDAA~~~~P~-  354 (535)
                      .|.. ++ ....+-.+++ ..||.-.|           +.+  +|+.......|+    ....+++.++|+.-+-.+|. 
T Consensus       333 if~l-~v-~~~~~r~~w~~~~~~~~~p-----------~~~--~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~  397 (422)
T PRK05329        333 IFGL-DV-LQPADRADWYQRDFFAPHP-----------FLQ--FGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIR  397 (422)
T ss_pred             cCCC-CC-CCCCchhhhhhhhhccCCc-----------hhh--cCceECCCcCcccCCCCeeccceEEeeehhcCCchHH
Confidence            0100 00 0111111222 12221111           000  122111111121    12258999999988777765 


Q ss_pred             ccccchHHHHHHHHHHHHHHHH
Q 009427          355 SFGGFGSLTRHLGRLSTGVYEA  376 (535)
Q Consensus       355 ~G~Gi~~al~da~~La~~l~~a  376 (535)
                      -|.|-+.++..+..+++.|.+.
T Consensus       398 ~~~g~Gva~~ta~~a~~~~~~~  419 (422)
T PRK05329        398 EGCGSGVALATALHAAEQIAEE  419 (422)
T ss_pred             hCCCchhHHHHHHHHHHHHHHh
Confidence            6788888999999998887653

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.01  E-value=0.00012  Score=79.90  Aligned_cols=57  Identities=18%  Similarity=0.200  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CC--eEE--EEEc-CC--e---EEEcCeEEEccCCCh
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY-EN--AAV--LLLA-EG--K---ILSSHLIIDAMGNFS  261 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~-~~--gv~--v~~~-~G--~---~i~a~lVV~AdG~~S  261 (535)
                      ..+...|.+.+++.|++++.+++|++|..+ ++  +.+  |.+. +|  +   ...+|+||+|+|...
T Consensus       226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t  293 (576)
T PRK13977        226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT  293 (576)
T ss_pred             hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence            567888999999999999999999999875 22  322  2222 23  1   357899999999753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.99  E-value=6.9e-05  Score=78.85  Aligned_cols=97  Identities=18%  Similarity=0.258  Sum_probs=73.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |+.|+-+|..|++.|.+|+++|+......                 ..++                      
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-----------------~~~~----------------------  182 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-----------------SLMP----------------------  182 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-----------------hhCC----------------------
Confidence            4799999 99999999999999999999998621000                 0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                     ..+...+.+.+.+.|++++.+++++++..+++++.+.+.+|+++.+|+||.|+|...
T Consensus       183 ---------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p  239 (377)
T PRK04965        183 ---------------PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP  239 (377)
T ss_pred             ---------------HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCc
Confidence                           011133555666789999999999999776667777788888999999999999643

>PRK12831 putative oxidoreductase; Provisional

Probab=97.99  E-value=1.9e-05  Score=85.37  Aligned_cols=33  Identities=33%  Similarity=0.352  Sum_probs=31.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..||+||| ||+|+++|+.|++.|++|+|+|+..
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~  173 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH  173 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            57999999 9999999999999999999999874

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.96  E-value=6.9e-05  Score=81.06  Aligned_cols=57  Identities=9%  Similarity=0.187  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHHh
Q 009427          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQA  267 (535)
Q Consensus       207 l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~  267 (535)
                      |.+.|.+.+.+  ++|+.+++|++|+.+++++.|.+.+|+++.||.||.|.-  ......+
T Consensus       228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p--~~~~~~l  284 (463)
T PRK12416        228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP--HDIAETL  284 (463)
T ss_pred             HHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC--HHHHHhh
Confidence            44444444322  579999999999988888888887787899999999984  3344443

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.94  E-value=2e-05  Score=81.74  Aligned_cols=139  Identities=17%  Similarity=0.212  Sum_probs=71.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC-cccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN-RCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~-~~~~  186 (535)
                      .||+|+|| ||++|++|+.|...+ .+++.+||.+-..++..+-+....++.    ..+     .. +....+|. ...|
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~----~fl-----~D-lvt~~~P~s~~sf   71 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQV----SFL-----KD-LVTLRDPTSPFSF   71 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-----TT-----SS-SSTTT-TTSTTSH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCcccc----ccc-----cc-cCcCcCCCCcccH
Confidence            58999999 999999999999886 999999998543333221100000000    000     00 00011111 1111


Q ss_pred             cc----cCccee-eeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEEEc----CCeEEEcCeE
Q 009427          187 EG----KGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLA----EGKILSSHLI  253 (535)
Q Consensus       187 ~~----~~~~~~-~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~----gv~v~~~----~G~~i~a~lV  253 (535)
                      ..    .+.++. .+.......+..+.+.|.-.+.+.+..+.++++|++|...++    .+.|.+.    +++++.|+.|
T Consensus        72 lnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~v  151 (341)
T PF13434_consen   72 LNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNV  151 (341)
T ss_dssp             HHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEE
T ss_pred             HHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeE
Confidence            10    111110 000112234566667776666666666888999999987654    3677773    2468999999


Q ss_pred             EEccC
Q 009427          254 IDAMG  258 (535)
Q Consensus       254 V~AdG  258 (535)
                      |.|+|
T Consensus       152 Vla~G  156 (341)
T PF13434_consen  152 VLATG  156 (341)
T ss_dssp             EE---
T ss_pred             EECcC
Confidence            99999

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.93  E-value=0.0001  Score=78.04  Aligned_cols=95  Identities=18%  Similarity=0.262  Sum_probs=71.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |..|+-+|..|++.|.+|+|+|+.....            ...                  ..         
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l------------~~~------------------~~---------  185 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM------------GRN------------------AP---------  185 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch------------hhh------------------cC---------
Confidence            3699999 9999999999999999999999862100            000                  00         


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+.+.|++++.+++|+++.. ++.+.+.+.+|+++.||+||.|.|..
T Consensus       186 ---------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~  240 (396)
T PRK09754        186 ---------------PPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS  240 (396)
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence                           01113455566678999999999999865 45566777788889999999999964

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.92  E-value=2.4e-05  Score=81.36  Aligned_cols=138  Identities=22%  Similarity=0.326  Sum_probs=79.2

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC--CC---CcccccccH----HHHHHHHHcCCCChHhHHHHHhh
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL--KG---REQEWNISR----KELLELVESGILVEDDIDEATAT  177 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~--~~---~~~~~~is~----~~l~~L~~lGl~~~~~~~~~~~~  177 (535)
                      ...||||||| |-||+-+|.+.||.|.+.+|+-.+..  +.   .+..++++.    +|++.|.  |+         +.+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALd--Gl---------~~r   94 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALD--GL---------CSR   94 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhc--ch---------Hhh
Confidence            3479999999 99999999999999999999977631  11   111122222    2333331  11         111


Q ss_pred             hcCCCcccccc----cCc-ceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe----EE--EEEcCC
Q 009427          178 KFNPNRCGFEG----KGE-IWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA----AV--LLLAEG  245 (535)
Q Consensus       178 ~~~~~~~~~~~----~~~-~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~g----v~--v~~~~G  245 (535)
                      ......+.|..    .++ .|.+   ...+|+..+...+.+..... +.+|+++ .|.++...+..    ++  |.+.||
T Consensus        95 vcD~s~vq~k~LNrs~GPAVwg~---RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dg  170 (679)
T KOG2311|consen   95 VCDQSGVQYKVLNRSKGPAVWGL---RAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDG  170 (679)
T ss_pred             hhhhhhhhHHHhhccCCCcccCh---HHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecC
Confidence            11111111110    111 2211   23467777777776666543 4466654 56666554321    11  445689


Q ss_pred             eEEEcCeEEEccCCC
Q 009427          246 KILSSHLIIDAMGNF  260 (535)
Q Consensus       246 ~~i~a~lVV~AdG~~  260 (535)
                      ..+.|+.||..+|.+
T Consensus       171 t~v~a~~VilTTGTF  185 (679)
T KOG2311|consen  171 TVVYAESVILTTGTF  185 (679)
T ss_pred             cEeccceEEEeeccc
Confidence            999999999999976

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.92  E-value=7e-05  Score=80.52  Aligned_cols=108  Identities=17%  Similarity=0.221  Sum_probs=67.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      +||||| |++|+++|..|++.|  .+|+|||+.+......              .++..           +..+.     
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~--------------~~~~~-----------~~~~~-----   51 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGA--------------CGLPY-----------FVGGF-----   51 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeec--------------CCCce-----------Eeccc-----
Confidence            599999 999999999999975  5899999984221100              01100           00000     


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CCeEEE--cCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILS--SHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~-~G~~i~--a~lVV~AdG~~S  261 (535)
                          +        -....+.....+.+.+.|++++.+++|+++..+++.+.+... +|.++.  +|.+|+|+|+..
T Consensus        52 ----~--------~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~  115 (444)
T PRK09564         52 ----F--------DDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP  115 (444)
T ss_pred             ----c--------CCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence                0        001111112233445678999989999999766666665532 255566  999999999753

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.91  E-value=0.00013  Score=76.13  Aligned_cols=59  Identities=22%  Similarity=0.266  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCCChH
Q 009427          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       204 ~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                      ....++.+.+..++.|++++++|+|.+++..++. ..|.+++|.++.+|.||.|-|+.+.
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~  231 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR  231 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchH
Confidence            3567788999999999999999999999988775 4466678889999999999997654

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.90  E-value=1.1e-05  Score=87.89  Aligned_cols=55  Identities=16%  Similarity=0.229  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCeEEEcCeEEEccCC
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      ..+.+.|.+.+++.|++|+++++|++|..+++ ++.+...+|..+.+|.||.+...
T Consensus       224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            46889999999999999999999999998876 46666666667899999988774

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.89  E-value=1.6e-05  Score=62.22  Aligned_cols=31  Identities=35%  Similarity=0.532  Sum_probs=28.4

Q ss_pred             EEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          115 VCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       115 IVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      ||| |++|+++|+.|+++|++|+|+|+....+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            899 9999999999999999999999986443

...

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.89  E-value=6.7e-05  Score=79.51  Aligned_cols=32  Identities=31%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .||+||| |++|+.+|+.||++|++|+|+|+.+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp   33 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP   33 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence            3799999 9999999999999999999999874

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN02568 polyamine oxidase

Probab=97.88  E-value=0.00016  Score=79.49  Aligned_cols=51  Identities=22%  Similarity=0.295  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                      .|.+.|.+.+.  +..|+.+++|+.|..+++++.|++.+|+++.||.||.|.-
T Consensus       243 ~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP  293 (539)
T PLN02568        243 SVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS  293 (539)
T ss_pred             HHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence            45565555442  3479999999999988889999998888899999999975

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.87  E-value=1.1e-05  Score=85.19  Aligned_cols=66  Identities=18%  Similarity=0.267  Sum_probs=49.6

Q ss_pred             ccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE--EEEc---CCe--EEEcCeEEEccCCChHHHHH
Q 009427          201 GVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLA---EGK--ILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       201 ~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~--v~~~---~G~--~i~a~lVV~AdG~~S~v~~~  266 (535)
                      ..|-.++.-.+.-.|..+|+.+....+|.++..++++-+  +.+.   .|+  +|+|+.||.|+|.+|--.++
T Consensus       220 Q~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~  292 (680)
T KOG0042|consen  220 QHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRK  292 (680)
T ss_pred             CCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHh
Confidence            345667777777778889999999999999988776522  2222   343  58999999999999977766

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.86  E-value=0.0001  Score=77.22  Aligned_cols=50  Identities=12%  Similarity=0.144  Sum_probs=41.0

Q ss_pred             HHHHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          209 EIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       209 ~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                      +.|.+++.+ .|..|..+.+|.+|.+++++|+|++.+.+++.+|++|++-=
T Consensus       209 d~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiP  259 (450)
T COG1231         209 DQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIP  259 (450)
T ss_pred             HHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecC
Confidence            455566554 47789999999999999999999997756899999999853

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.79  E-value=0.00029  Score=77.35  Aligned_cols=68  Identities=16%  Similarity=0.248  Sum_probs=56.0

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CC--eEEEcCeEEEccCCChHHHHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~---~G--~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      +..+|+.++...+.+.+.++|++++.+++|+++..+++++. |++.   +|  .+++|+.||.|+|.|+.-..+
T Consensus       122 dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~  195 (516)
T TIGR03377       122 DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAE  195 (516)
T ss_pred             CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHH
Confidence            35689999999999999999999999999999988777543 3332   34  379999999999999977655

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.79  E-value=0.00011  Score=85.09  Aligned_cols=33  Identities=33%  Similarity=0.406  Sum_probs=31.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .-+|+||| ||+|+++|+.|+++|++|+|+|+..
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~  572 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE  572 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            46899999 9999999999999999999999874

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.78  E-value=0.00064  Score=71.43  Aligned_cols=114  Identities=15%  Similarity=0.271  Sum_probs=72.3

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe-EEEcCeEEEccCCCh-HHHHHhCCCCCCCCCceeEEEEEec
Q 009427          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNFS-PVVKQAFPAGSGPLDRTTYMFTYID  286 (535)
Q Consensus       209 ~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~-~i~a~lVV~AdG~~S-~v~~~~~p~~~~~~~~~~~~~~y~~  286 (535)
                      +...+.+++.|++++.++.|+++  +++++++.  +|. +|.|+.+|-|.|... ++.+++.|.               +
T Consensus       213 ~~a~~~L~~~GV~v~l~~~Vt~v--~~~~v~~~--~g~~~I~~~tvvWaaGv~a~~~~~~l~~~---------------e  273 (405)
T COG1252         213 KYAERALEKLGVEVLLGTPVTEV--TPDGVTLK--DGEEEIPADTVVWAAGVRASPLLKDLSGL---------------E  273 (405)
T ss_pred             HHHHHHHHHCCCEEEcCCceEEE--CCCcEEEc--cCCeeEecCEEEEcCCCcCChhhhhcChh---------------h
Confidence            44555667789999999999998  45666554  455 599999999999742 222221010               0


Q ss_pred             CCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhccccCCCCCCCCcc-CCCeeEeecCCCccc----ccccccchH
Q 009427          287 PQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-FNRILQFGDASGIQS----PVSFGGFGS  361 (535)
Q Consensus       287 ~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl~~~-~~rvlliGDAA~~~~----P~~G~Gi~~  361 (535)
                      .  ++.                     ..+...            ..+... .+.|+.+||+|...+    |-++|.   
T Consensus       274 ~--dr~---------------------Grl~V~------------~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~---  315 (405)
T COG1252         274 T--DRR---------------------GRLVVN------------PTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQA---  315 (405)
T ss_pred             h--ccC---------------------CCEEeC------------CCcccCCCCCeEEEeccccCCCCCCCCChhHH---
Confidence            0  000                     000000            011222 477999999998887    566765   


Q ss_pred             HHHHHHHHHHHHHHHHhC
Q 009427          362 LTRHLGRLSTGVYEAVRG  379 (535)
Q Consensus       362 al~da~~La~~l~~al~~  379 (535)
                      |.+.+..+++.|...++.
T Consensus       316 A~Qqg~~~a~ni~~~l~g  333 (405)
T COG1252         316 AHQQGEYAAKNIKARLKG  333 (405)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            778888888888877764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.78  E-value=4.9e-05  Score=87.20  Aligned_cols=33  Identities=30%  Similarity=0.399  Sum_probs=31.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..||+||| ||+|+++|..|+++|++|+|+|+..
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~  464 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH  464 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            57999999 9999999999999999999999864

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.77  E-value=0.00029  Score=76.16  Aligned_cols=95  Identities=18%  Similarity=0.291  Sum_probs=73.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+|+|+.+..               +   ..++                      
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~---------------l---~~~d----------------------  215 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL---------------L---SFLD----------------------  215 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc---------------C---CcCC----------------------
Confidence            3699999 999999999999999999999986210               0   0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+.+.|++++.+++|+++..+++++.+++.+|+++.+|.||.|+|..
T Consensus       216 ---------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~  271 (461)
T PRK05249        216 ---------------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT  271 (461)
T ss_pred             ---------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence                           01123455556678999999999999987677777777778889999999999953

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.75  E-value=0.00015  Score=73.90  Aligned_cols=136  Identities=24%  Similarity=0.308  Sum_probs=72.0

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC-CCCCccccc---ccHHHHHHHHHcCCCChHhHHH-HHh-hhcCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT-LKGREQEWN---ISRKELLELVESGILVEDDIDE-ATA-TKFNP  181 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~-~~~~~~~~~---is~~~l~~L~~lGl~~~~~~~~-~~~-~~~~~  181 (535)
                      .+|||+||| ||.|-.+|+..++.|++.+.||++. +++.  +.|   +....+  |...++..  ++.. .+. +...-
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGT--cLnvGcIPSKAL--L~nSh~yh--~~q~~~~~~rGi~v  111 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGT--CLNVGCIPSKAL--LNNSHLYH--EAQHEDFASRGIDV  111 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCce--eeeccccccHHH--hhhhHHHH--HHhhhHHHhcCccc
Confidence            379999999 9999999999999999999999963 4332  222   111110  00001100  0000 000 00000


Q ss_pred             CcccccccCcceeeeccccc-cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccC
Q 009427          182 NRCGFEGKGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMG  258 (535)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~-v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG  258 (535)
                      ....+...      ...... -.-..|...+...+++++++++.+..  ++ .+++.+.+...||  ..+.++.+|+|+|
T Consensus       112 s~~~~dl~------~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g--sf-~~p~~V~v~k~dg~~~ii~aKnIiiATG  182 (506)
T KOG1335|consen  112 SSVSLDLQ------AMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG--SF-LDPNKVSVKKIDGEDQIIKAKNIIIATG  182 (506)
T ss_pred             cceecCHH------HHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE--ee-cCCceEEEeccCCCceEEeeeeEEEEeC
Confidence            00000000      000000 00123444555556667777776542  22 3567777777676  4699999999999


Q ss_pred             C
Q 009427          259 N  259 (535)
Q Consensus       259 ~  259 (535)
                      .
T Consensus       183 S  183 (506)
T KOG1335|consen  183 S  183 (506)
T ss_pred             C
Confidence            5

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.75  E-value=0.00023  Score=75.43  Aligned_cols=106  Identities=15%  Similarity=0.196  Sum_probs=67.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC--cEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .+||||| |++|+.+|..|++.|.  +|+|+++.......+. .++    ..+              +.   .+.     
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~-~l~----~~~--------------~~---~~~-----   56 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERP-PLS----KSM--------------LL---EDS-----   56 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCC-CCC----HHH--------------HC---CCC-----
Confidence            4799999 9999999999999987  7999998743221110 000    000              00   000     


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                       .....        +.+       .+...+.+++++.++.|+.+..++  ..|.+++|+++.+|.+|+|+|+..
T Consensus        57 -~~~~~--------~~~-------~~~~~~~~i~~~~g~~V~~id~~~--~~v~~~~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         57 -PQLQQ--------VLP-------ANWWQENNVHLHSGVTIKTLGRDT--RELVLTNGESWHWDQLFIATGAAA  112 (396)
T ss_pred             -ccccc--------cCC-------HHHHHHCCCEEEcCCEEEEEECCC--CEEEECCCCEEEcCEEEEccCCCC
Confidence             00000        000       012335689999999999986543  345566788899999999999764

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.74  E-value=0.00032  Score=74.65  Aligned_cols=50  Identities=18%  Similarity=0.243  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                      .|.+.|.+++..   .++.+++|+.|..+..+..+.+.+|.++.+|.||.+.=
T Consensus       216 ~l~~al~~~l~~---~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p  265 (444)
T COG1232         216 SLIEALAEKLEA---KIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAP  265 (444)
T ss_pred             HHHHHHHHHhhh---ceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCC
Confidence            355555555543   38999999999888777777777888899999999864

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.73  E-value=0.00033  Score=75.75  Aligned_cols=95  Identities=20%  Similarity=0.247  Sum_probs=72.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |++|+.+|..|++.|.+|+|+|+.+...                  ..++                      
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------------~~~~----------------------  210 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL------------------PGED----------------------  210 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC------------------CCCC----------------------
Confidence            4799999 9999999999999999999999872100                  0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.+|  .++.+|.||.|+|..
T Consensus       211 ---------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~  268 (461)
T TIGR01350       211 ---------------AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK  268 (461)
T ss_pred             ---------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence                           01113345566678999999999999987777777776666  579999999999953

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.72  E-value=6.9e-05  Score=88.12  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=31.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..+|+||| ||+|+++|..|+++|++|+|+|+..
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~  463 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH  463 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            47999999 9999999999999999999999874

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.67  E-value=0.00057  Score=73.93  Aligned_cols=94  Identities=21%  Similarity=0.298  Sum_probs=71.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |++|+-+|..|++.|.+|+|+|+.+..               +   ..++                      
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~---------------l---~~~~----------------------  212 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI---------------L---PGED----------------------  212 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc---------------C---CcCC----------------------
Confidence            3699999 999999999999999999999986210               0   0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G---~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.+|   +++.+|.||.|+|.
T Consensus       213 ---------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~  270 (462)
T PRK06416        213 ---------------KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGR  270 (462)
T ss_pred             ---------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC
Confidence                           01113344556678999999999999987767777776555   67999999999995

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.66  E-value=0.00044  Score=69.26  Aligned_cols=32  Identities=44%  Similarity=0.632  Sum_probs=30.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ++|||||| |.+|+.+|.+||.+|.+|+|+|..
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQE   37 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQE   37 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEccc
Confidence            68999999 999999999999999999999987

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.64  E-value=4.7e-05  Score=81.60  Aligned_cols=56  Identities=18%  Similarity=0.210  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCeEEEcCeEEEccCCC
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      ..+.+.+.+.+...|++++.+++|++|..++++  +.|++++|++++|+.||.....+
T Consensus       232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~  289 (443)
T PTZ00363        232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF  289 (443)
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc
Confidence            457788888888899999999999999877654  45777788899999999865543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.63  E-value=0.00022  Score=74.48  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=64.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHC---CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          112 DVIVCG-GTLGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~---G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .||||| |++|+.+|..|.++   +.+|+|||+......      .+ .+..+              +...         
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~------~~-~~~~~--------------~~g~---------   50 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPY------SG-MLPGM--------------IAGH---------   50 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcc------cc-hhhHH--------------Hhee---------
Confidence            489999 99999999999744   689999998732110      00 00000              0000         


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                    ++...+...+.+.+.+.|++++.+ +|++++.+++  +|.+++|+++.+|.+|+|+|+..
T Consensus        51 --------------~~~~~~~~~~~~~~~~~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~  107 (364)
T TIGR03169        51 --------------YSLDEIRIDLRRLARQAGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTT  107 (364)
T ss_pred             --------------CCHHHhcccHHHHHHhcCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCC
Confidence                          001111122334455668988764 7999865544  56666788899999999999754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR02730 carot_isom carotene isomerase

Probab=97.63  E-value=5.3e-05  Score=82.66  Aligned_cols=60  Identities=20%  Similarity=0.211  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCCChHHH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~~S~v~  264 (535)
                      ..+.+.|.+.+++.|++|+.+++|++|..+++++ .|.+++|+++.||.||.|.|.+..+.
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~  289 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFG  289 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHH
Confidence            4678889999999999999999999998765543 46667788899999999999776553

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK06116 glutathione reductase; Validated

Probab=97.61  E-value=0.00061  Score=73.46  Aligned_cols=94  Identities=19%  Similarity=0.208  Sum_probs=71.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+++++....               +   ..++                      
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~---------------l---~~~~----------------------  207 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP---------------L---RGFD----------------------  207 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC---------------c---cccC----------------------
Confidence            3799999 999999999999999999999986210               0   0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.++++ +.+.+.+|+++.+|.||.|+|.
T Consensus       208 ---------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~  263 (450)
T PRK06116        208 ---------------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGR  263 (450)
T ss_pred             ---------------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCC
Confidence                           011134455666789999999999999766555 6677777888999999999995

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.60  E-value=0.00024  Score=76.79  Aligned_cols=33  Identities=36%  Similarity=0.443  Sum_probs=31.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..+|+||| |++|+++|..|+++|++|+|+|+..
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~  173 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD  173 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            47999999 9999999999999999999999874

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.57  E-value=0.0038  Score=66.81  Aligned_cols=89  Identities=22%  Similarity=0.378  Sum_probs=64.6

Q ss_pred             cEEEEc-chHHHHHHHHHHH--------------CCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh
Q 009427          112 DVIVCG-GTLGIFIATALSF--------------KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA  176 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr--------------~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~  176 (535)
                      .|+||| |++|+-+|..|+.              .|.+|+|||+..-.               +   .-++         
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---------------l---~~~~---------  227 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV---------------L---GSFD---------  227 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc---------------c---ccCC---------
Confidence            799999 9999999999885              47889999876200               0   0000         


Q ss_pred             hhcCCCcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEc
Q 009427          177 TKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (535)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~A  256 (535)
                                                  ..+.+.+.+.+.+.|++++.+++|+++.  ++.  +.+++|+++.+|++|.|
T Consensus       228 ----------------------------~~~~~~~~~~L~~~gV~v~~~~~v~~v~--~~~--v~~~~g~~i~~d~vi~~  275 (424)
T PTZ00318        228 ----------------------------QALRKYGQRRLRRLGVDIRTKTAVKEVL--DKE--VVLKDGEVIPTGLVVWS  275 (424)
T ss_pred             ----------------------------HHHHHHHHHHHHHCCCEEEeCCeEEEEe--CCE--EEECCCCEEEccEEEEc
Confidence                                        0111345556677899999999999884  344  44668889999999999


Q ss_pred             cCC
Q 009427          257 MGN  259 (535)
Q Consensus       257 dG~  259 (535)
                      .|.
T Consensus       276 ~G~  278 (424)
T PTZ00318        276 TGV  278 (424)
T ss_pred             cCC
Confidence            995

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.56  E-value=0.00039  Score=74.41  Aligned_cols=107  Identities=14%  Similarity=0.121  Sum_probs=67.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ..+||||| |.+|+.+|..|.+.+++|+|||+....    .+.   ..+...                   ..+.     
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~----~~~---~~l~~~-------------------~~g~-----   58 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM----LFT---PLLPQT-------------------TTGT-----   58 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc----chh---hhHHHh-------------------cccC-----
Confidence            57999999 999999999998878999999987311    110   000000                   0000     


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE--------cCCeEEEcCeEEEccCCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--------AEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~--------~~G~~i~a~lVV~AdG~~  260 (535)
                                   .+...+...+.+.+...++++. ..+|++|+.+++.+++..        .+|.++.+|++|+|+|+.
T Consensus        59 -------------~~~~~~~~~~~~~~~~~~~~~i-~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~  124 (424)
T PTZ00318         59 -------------LEFRSICEPVRPALAKLPNRYL-RAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGAR  124 (424)
T ss_pred             -------------CChHHhHHHHHHHhccCCeEEE-EEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcc
Confidence                         0011111223344444566665 568999977666666532        346689999999999976


Q ss_pred             h
Q 009427          261 S  261 (535)
Q Consensus       261 S  261 (535)
                      .
T Consensus       125 ~  125 (424)
T PTZ00318        125 P  125 (424)
T ss_pred             c
Confidence            4

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.55  E-value=0.00097  Score=71.88  Aligned_cols=93  Identities=19%  Similarity=0.316  Sum_probs=70.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |+.|+-+|..+++.|.+|+|+|+......                 ++ +                       
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-----------------~~-d-----------------------  206 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR-----------------GF-D-----------------------  206 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc-----------------cc-C-----------------------
Confidence            699999 99999999999999999999997621000                 00 0                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                    ..+.+.+.+.+.+.|++++.+++|+++..+++++.+.+.+|+++.+|.||.|+|.
T Consensus       207 --------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~  261 (446)
T TIGR01424       207 --------------DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGR  261 (446)
T ss_pred             --------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence                          0011234455667799999999999997666777777767888999999999995

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.54  E-value=0.00098  Score=71.63  Aligned_cols=93  Identities=12%  Similarity=0.134  Sum_probs=68.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |++|+.+|..|++.|.+|+|+|+....-                  .-.+                       
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------------~~~~-----------------------  197 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL------------------PREE-----------------------  197 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC------------------CCCC-----------------------
Confidence            699999 9999999999999999999999862100                  0000                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                    ..+.+.+.+.+.+.|++++.+++|++++.+++.+.+.. +|+++.+|.||.|+|..
T Consensus       198 --------------~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~  252 (438)
T PRK07251        198 --------------PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRK  252 (438)
T ss_pred             --------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCC
Confidence                          00112344556677999999999999976555565554 56789999999999953

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.54  E-value=0.00077  Score=70.19  Aligned_cols=58  Identities=21%  Similarity=0.257  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChHH
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      .+...+.+.++++|++|+++..|.+|..+++.++ |.++||++++++.||-=.+.|-..
T Consensus       265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf  323 (561)
T KOG4254|consen  265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTF  323 (561)
T ss_pred             HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHH
Confidence            4556788888899999999999999988875433 667899999999888766655444

>PLN02507 glutathione reductase

Probab=97.53  E-value=0.001  Score=72.66  Aligned_cols=93  Identities=17%  Similarity=0.268  Sum_probs=71.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      +|+||| |+.|+-+|..+++.|.+|+|+++.+..-.                 + ++                       
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~-----------------~-~d-----------------------  243 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-----------------G-FD-----------------------  243 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc-----------------c-cC-----------------------
Confidence            699999 99999999999999999999998621000                 0 00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                    ..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.+|+++.+|.||.|.|.
T Consensus       244 --------------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~  298 (499)
T PLN02507        244 --------------DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGR  298 (499)
T ss_pred             --------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecC
Confidence                          0011334455567799999999999998766777777777888999999999995

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.51  E-value=0.00063  Score=73.16  Aligned_cols=108  Identities=13%  Similarity=0.060  Sum_probs=65.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          112 DVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      +||||| |++|+.+|..|++.  +.+|+|||+.....-..              .++..      ....... .      
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~--------------~~lp~------~~~~~~~-~------   55 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFAN--------------CALPY------YIGEVVE-D------   55 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCccccc--------------CCcch------hhcCccC-C------
Confidence            699999 99999999999987  68999999984211100              01100      0000000 0      


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCeEEEEEcC-Ce--EEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLLAE-GK--ILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a-~~~G~~i~~~~~V~~i~~~~~gv~v~~~~-G~--~i~a~lVV~AdG~~S  261 (535)
                      .               ..+.....+.+ .+.|++++.+++|++|..++..+.+...+ ++  ++.+|.+|+|+|...
T Consensus        56 ~---------------~~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~  117 (438)
T PRK13512         56 R---------------KYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA  117 (438)
T ss_pred             H---------------HHcccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence            0               00000001122 34689999999999997766666555432 22  478999999999764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.49  E-value=0.00042  Score=79.82  Aligned_cols=104  Identities=17%  Similarity=0.211  Sum_probs=66.0

Q ss_pred             EEEEc-chHHHHHHHHHHHC---CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          113 VIVCG-GTLGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~---G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ||||| |++|+.+|..|.+.   +++|+|||+.+.....+.      .+..+. .|-             ...       
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~------~L~~~l-~g~-------------~~~-------   53 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRI------LLSSVL-QGE-------------ADL-------   53 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccc------cccHHH-CCC-------------CCH-------
Confidence            68999 99999999988775   579999998854322111      000000 000             000       


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                      ..+.....+.+.+.|++++.+++|+.++.+  ...|.+.+|.++.+|.||.|+|...
T Consensus        54 ----------------~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~--~k~V~~~~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        54 ----------------DDITLNSKDWYEKHGITLYTGETVIQIDTD--QKQVITDAGRTLSYDKLILATGSYP  108 (785)
T ss_pred             ----------------HHccCCCHHHHHHCCCEEEcCCeEEEEECC--CCEEEECCCcEeeCCEEEECCCCCc
Confidence                            000000112234579999999999998644  3456666788899999999999753

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.48  E-value=0.0015  Score=70.21  Aligned_cols=93  Identities=20%  Similarity=0.393  Sum_probs=71.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .++||| |+.|+-.|..+++.|.+|+|||+...                     +++          .+.          
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~---------------------iLp----------~~D----------  213 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDR---------------------ILP----------GED----------  213 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC---------------------CCC----------cCC----------
Confidence            599999 99999999999999999999999721                     110          000          


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe--EEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK--ILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~--~i~a~lVV~AdG~  259 (535)
                                    ..+.+.+.+.+++.|+.++.+++++.++..++++.+.+++|.  ++++|.|+.|.|.
T Consensus       214 --------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR  270 (454)
T COG1249         214 --------------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR  270 (454)
T ss_pred             --------------HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC
Confidence                          011134555555667899999999999877777778887765  7899999999995

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.47  E-value=0.0015  Score=70.60  Aligned_cols=94  Identities=18%  Similarity=0.197  Sum_probs=69.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+....-.                 ++ +                      
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-----------------~~-d----------------------  206 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-----------------SF-D----------------------  206 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-----------------cc-C----------------------
Confidence            3799999 99999999999999999999998721000                 00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCC-eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG-KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G-~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.++.|+++..++++ +.+.+.+| .++.+|.||.|.|.
T Consensus       207 ---------------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~  263 (450)
T TIGR01421       207 ---------------SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGR  263 (450)
T ss_pred             ---------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCC
Confidence                           001133455566779999999999999765444 56666667 57999999999995

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.46  E-value=0.0015  Score=70.87  Aligned_cols=94  Identities=26%  Similarity=0.387  Sum_probs=68.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+...                     ++..          +.         
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~---------------------~l~~----------~d---------  212 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR---------------------ALPN----------ED---------  212 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC---------------------cCCc----------cC---------
Confidence            3799999 99999999999999999999997620                     0000          00         


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--CC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~--~G--~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|+++..+++.+.+.+.  +|  .++.+|.||.|+|.
T Consensus       213 ---------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~  271 (466)
T PRK07818        213 ---------------AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF  271 (466)
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence                           011134555666789999999999999765555555543  55  47999999999995

>TIGR02053 MerA mercuric reductase

Probab=97.45  E-value=0.0013  Score=71.18  Aligned_cols=94  Identities=16%  Similarity=0.218  Sum_probs=68.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |++|+-+|..|++.|.+|+|+|+.+.     ..             ..++                      
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~-----~l-------------~~~d----------------------  206 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR-----LL-------------PREE----------------------  206 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc-----CC-------------CccC----------------------
Confidence            4799999 99999999999999999999998621     00             0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G~~i~a~lVV~AdG~  259 (535)
                                     ..+...+.+.+.+.|++++.+++|++++.+++.+.+.+.   +++++.+|.||.|+|.
T Consensus       207 ---------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~  264 (463)
T TIGR02053       207 ---------------PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGR  264 (463)
T ss_pred             ---------------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECC
Confidence                           001123445556779999999999999766555555543   2367999999999995

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07846 mycothione reductase; Reviewed

Probab=97.45  E-value=0.0013  Score=71.10  Aligned_cols=93  Identities=22%  Similarity=0.285  Sum_probs=68.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |+.|+-+|..|++.|.+|+|+|+....-.                 . ++.                     
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-----------------~-~d~---------------------  207 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-----------------H-LDD---------------------  207 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-----------------c-cCH---------------------
Confidence            4799999 99999999999999999999998621000                 0 000                     


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                      .+.+.+. +..+.+++++.++++++++.+++++.+.+.+|+++.+|.||.|+|.
T Consensus       208 ----------------~~~~~l~-~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~  260 (451)
T PRK07846        208 ----------------DISERFT-ELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR  260 (451)
T ss_pred             ----------------HHHHHHH-HHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC
Confidence                            0001122 2234578999999999997666677777777888999999999995

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.45  E-value=0.0015  Score=70.96  Aligned_cols=94  Identities=20%  Similarity=0.241  Sum_probs=69.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+.+...                  ...+                      
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------~~~d----------------------  223 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL------------------AAAD----------------------  223 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC------------------CcCC----------------------
Confidence            3799999 9999999999999999999999862100                  0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC--C--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~--G--~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.+  |  .++.+|.||.|+|.
T Consensus       224 ---------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~  282 (475)
T PRK06327        224 ---------------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR  282 (475)
T ss_pred             ---------------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC
Confidence                           0111334455566799999999999998766676666544  3  46999999999995

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.44  E-value=0.0014  Score=71.04  Aligned_cols=93  Identities=23%  Similarity=0.333  Sum_probs=71.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |..|+-+|..|++.|.+|+++|+......                 . .+                       
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-----------------~-~d-----------------------  217 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-----------------G-ED-----------------------  217 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-----------------C-CC-----------------------
Confidence            699999 99999999999999999999997621000                 0 00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                    ..+...+.+.+.+.|++++.++++++++.+++++.+.+.+|+++.+|.||.|.|.
T Consensus       218 --------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~  272 (466)
T PRK07845        218 --------------ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGS  272 (466)
T ss_pred             --------------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecC
Confidence                          0011334455667899999999999997767777777777888999999999995

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.44  E-value=0.00013  Score=79.51  Aligned_cols=55  Identities=15%  Similarity=0.221  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCC-----eEEEcCeEEEccCC
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEG-----KILSSHLIIDAMGN  259 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G-----~~i~a~lVV~AdG~  259 (535)
                      ..|.+.|.+.+++.|++|+.+++|++|..+++.+ .+.+.++     +++.||.||.+...
T Consensus       232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~  292 (492)
T TIGR02733       232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPP  292 (492)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence            4577888888888999999999999998877642 2323233     57999999998875

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.44  E-value=0.0016  Score=70.34  Aligned_cols=93  Identities=23%  Similarity=0.402  Sum_probs=67.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      +|+||| |++|+-+|..|++.|.+|+|+|+......                 +. +                       
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-----------------~~-d-----------------------  210 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-----------------GE-D-----------------------  210 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-----------------cc-c-----------------------
Confidence            799999 99999999999999999999998621000                 00 0                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccCCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF  260 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG~~  260 (535)
                                    ..+.+.+.+.+.+.|++++.+++|++++.+++.+.+.. +|  .++.+|.||.|+|..
T Consensus       211 --------------~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~~  267 (458)
T PRK06912        211 --------------EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGRK  267 (458)
T ss_pred             --------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCCc
Confidence                          01113455566678999999999999976555555543 34  369999999999953

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.43  E-value=0.0012  Score=69.51  Aligned_cols=105  Identities=10%  Similarity=0.102  Sum_probs=65.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .|||||| |++|+.+|..|.+.  ..+|+||+++......+.              .+ +     ..+...         
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~--------------~l-~-----~~~~~~---------   53 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKP--------------DL-S-----HVFSQG---------   53 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcC--------------cC-c-----HHHhCC---------
Confidence            4899999 99999999999886  467999998742111110              00 0     000000         


Q ss_pred             ccCcceeeeccccccCHHHHHH-HHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~-~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                    .....+.. ...+.+.+.|++++.+++|+++..+..  ++.+ ++.++.+|.||.|+|+..
T Consensus        54 --------------~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~-~~~~~~yd~LVlATG~~~  111 (377)
T PRK04965         54 --------------QRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKS-QGNQWQYDKLVLATGASA  111 (377)
T ss_pred             --------------CCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEE-CCeEEeCCEEEECCCCCC
Confidence                          00111111 122234557899999999999865433  4444 577899999999999754

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.42  E-value=0.0019  Score=70.06  Aligned_cols=94  Identities=19%  Similarity=0.263  Sum_probs=68.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..+++.|.+|+|+|+.+..-.                 ++ +                      
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~-----------------~~-d----------------------  214 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP-----------------GT-D----------------------  214 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC-----------------CC-C----------------------
Confidence            3699999 99999999999999999999998621000                 00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---C--CeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---E--GKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~--G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.   +  ++++.+|.||.|.|.
T Consensus       215 ---------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~  274 (466)
T PRK06115        215 ---------------TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR  274 (466)
T ss_pred             ---------------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC
Confidence                           001133555566779999999999999766666665542   2  357999999999995

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.41  E-value=0.00046  Score=67.93  Aligned_cols=66  Identities=14%  Similarity=0.108  Sum_probs=45.8

Q ss_pred             cccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEE-EEEc---C-CeEEEcCeEEEccCCChHHHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAV-LLLA---E-GKILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~-v~~~---~-G~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      ..++|..|.+.++.++++.| +++..+ .|.++..+.+.+. +..+   + ......+.+|+|+|-|++....
T Consensus       142 aqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp  213 (380)
T KOG2852|consen  142 AQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLP  213 (380)
T ss_pred             ceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhcc
Confidence            34899999999999999876 666665 6778753333222 1111   1 3457889999999999876544

>PLN02576 protoporphyrinogen oxidase

Probab=97.38  E-value=0.0002  Score=78.06  Aligned_cols=40  Identities=38%  Similarity=0.522  Sum_probs=34.4

Q ss_pred             CCCcccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccC-CCCC
Q 009427          107 AVGTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNT-LKGR  146 (535)
Q Consensus       107 ~~~~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~-~~~~  146 (535)
                      ++.++||+||| |++||++|+.|+++ |++|+|+|+.. ++|+
T Consensus         9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr   51 (496)
T PLN02576          9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN   51 (496)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence            34468999999 99999999999999 99999999984 4443

>PRK06370 mercuric reductase; Validated

Probab=97.38  E-value=0.0023  Score=69.34  Aligned_cols=94  Identities=15%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |+.|+-+|..|++.|.+|+|+|+......                 +. +                      
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~-----------------~~-~----------------------  211 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP-----------------RE-D----------------------  211 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc-----------------cc-C----------------------
Confidence            3799999 99999999999999999999998621000                 00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.   ++.++.+|.||.|+|.
T Consensus       212 ---------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~  269 (463)
T PRK06370        212 ---------------EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGR  269 (463)
T ss_pred             ---------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCC
Confidence                           001133455566789999999999999776666555442   2457999999999995

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.00067  Score=64.46  Aligned_cols=121  Identities=20%  Similarity=0.293  Sum_probs=80.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCC-hHhHHHHHhhhcCCCcccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILV-EDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~-~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      -.|+||| ||++-.+|+.+++.-++-+|+|-....+-...              |-++ ..+++     .| |       
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pG--------------GQLtTTT~ve-----Nf-P-------   61 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPG--------------GQLTTTTDVE-----NF-P-------   61 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCC--------------ceeeeeeccc-----cC-C-------
Confidence            4799999 99999999999999999999996532221100              1000 00011     01 1       


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHHhC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAF  268 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~  268 (535)
                         ++.     -++.-..|.+.+++.+.+.|.+|+.. .|.++.....-.++.+ +.+.+.||.||.|+|+..  ++..+
T Consensus        62 ---GFP-----dgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~t-d~~~v~~~avI~atGAsA--kRl~~  129 (322)
T KOG0404|consen   62 ---GFP-----DGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWT-DARPVTADAVILATGASA--KRLHL  129 (322)
T ss_pred             ---CCC-----cccccHHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEe-cCCceeeeeEEEecccce--eeeec
Confidence               110     12334567788999999999998865 5788877666677766 556799999999999643  23335


Q ss_pred             CC
Q 009427          269 PA  270 (535)
Q Consensus       269 p~  270 (535)
                      |+
T Consensus       130 pg  131 (322)
T KOG0404|consen  130 PG  131 (322)
T ss_pred             CC
Confidence            65

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.37  E-value=0.00086  Score=77.30  Aligned_cols=97  Identities=19%  Similarity=0.226  Sum_probs=71.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |.+|+-+|..|++.|.+|.|+|+.+..            +..    .+ +                      
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l------------l~~----~l-d----------------------  181 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL------------MAK----QL-D----------------------  181 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch------------hhh----hc-C----------------------
Confidence            3699999 999999999999999999999976210            000    00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                     ....+.+.+.+++.|++++.++.++++..++....|.+++|+++.+|+||.|.|...
T Consensus       182 ---------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       182 ---------------QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             ---------------HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence                           001134555666789999999999998654434456777888999999999999764

>PRK14694 putative mercuric reductase; Provisional

Probab=97.35  E-value=0.0023  Score=69.49  Aligned_cols=92  Identities=17%  Similarity=0.216  Sum_probs=68.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |+.|+-+|..|++.|.+|+|+++..+...                   .+                       
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~-------------------~~-----------------------  217 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ-------------------ED-----------------------  217 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC-------------------CC-----------------------
Confidence            699999 99999999999999999999986411000                   00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                    ..+.+.+.+.+.+.|++++.+++|++++.+++.+.+.+. +.++.+|.||.|.|..
T Consensus       218 --------------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~D~vi~a~G~~  272 (468)
T PRK14694        218 --------------PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETN-AGTLRAEQLLVATGRT  272 (468)
T ss_pred             --------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEC-CCEEEeCEEEEccCCC
Confidence                          001133455566789999999999999766555666654 4469999999999953

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.34  E-value=0.00088  Score=69.82  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=30.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      .+|+||| |++|+.+|..|++.|++|+|+|+.+.
T Consensus        19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   52 (352)
T PRK12770         19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE   52 (352)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5899999 99999999999999999999999743

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.33  E-value=0.0026  Score=69.12  Aligned_cols=95  Identities=22%  Similarity=0.307  Sum_probs=67.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |++|+-+|..|++.|.+|+|+|+.+..               +   ...+                      
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i---------------l---~~~~----------------------  220 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI---------------L---PTED----------------------  220 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc---------------C---CcCC----------------------
Confidence            3799999 999999999999999999999987210               0   0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeEEE-EEcCC--eEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVL-LLAEG--KILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~-~~gv~v-~~~~G--~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+.+.|++++.+++|+++... ++++.+ .+.+|  +++.+|.||.|+|..
T Consensus       221 ---------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~  280 (472)
T PRK05976        221 ---------------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR  280 (472)
T ss_pred             ---------------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence                           011133445566779999999999999642 344433 34455  469999999999953

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.33  E-value=0.0011  Score=76.66  Aligned_cols=104  Identities=13%  Similarity=0.171  Sum_probs=66.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHC----CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          112 DVIVCG-GTLGIFIATALSFK----GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~----G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      +||||| |++|+.+|..|.++    +++|+||++.+.....+.              .+ +     ..+.. ...     
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~--------------~L-~-----~~~~~-~~~-----   58 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRV--------------HL-S-----SYFSH-HTA-----   58 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCC--------------cc-h-----HhHcC-CCH-----
Confidence            799999 99999999999764    579999998854332111              11 0     00000 000     


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                        ..+.....+.+.+.|++++.+++|+.+..+  ..+|.+.+|.++.+|.+|+|+|...
T Consensus        59 ------------------~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~--~~~V~~~~G~~i~yD~LVIATGs~p  113 (847)
T PRK14989         59 ------------------EELSLVREGFYEKHGIKVLVGERAITINRQ--EKVIHSSAGRTVFYDKLIMATGSYP  113 (847)
T ss_pred             ------------------HHccCCCHHHHHhCCCEEEcCCEEEEEeCC--CcEEEECCCcEEECCEEEECCCCCc
Confidence                              000000112234578999999999988543  3455666788899999999999753

>PRK14727 putative mercuric reductase; Provisional

Probab=97.33  E-value=0.0026  Score=69.29  Aligned_cols=92  Identities=25%  Similarity=0.221  Sum_probs=69.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |+.|+-+|..|++.|.+|+|+++..+-.                  . ++                       
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~------------------~-~d-----------------------  227 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF------------------R-ED-----------------------  227 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC------------------c-ch-----------------------
Confidence            699999 9999999999999999999998641100                  0 00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                    ..+.+.+.+.+.+.|++++.+++|+++..+++++.+.+.++ ++.+|.||.|.|..
T Consensus       228 --------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~  282 (479)
T PRK14727        228 --------------PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRH  282 (479)
T ss_pred             --------------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCC
Confidence                          00113455556678999999999999977667777766444 68999999999964

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.32  E-value=0.0023  Score=70.01  Aligned_cols=92  Identities=20%  Similarity=0.273  Sum_probs=69.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      +|+||| |+.|+-+|..|++.|.+|+|+++.....                  . +++                      
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~------------------~-~d~----------------------  222 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR------------------G-FDR----------------------  222 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc------------------c-CCH----------------------
Confidence            799999 9999999999999999999998641100                  0 010                      


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     .+.+.+.+.+++.|++++.++.++++...++.+.+.+.+|+++.+|.||.|.|.
T Consensus       223 ---------------~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~  276 (499)
T PTZ00052        223 ---------------QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGR  276 (499)
T ss_pred             ---------------HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCC
Confidence                           011334455667799999999999887655566677767888999999999995

>PRK07208 hypothetical protein; Provisional

Probab=97.32  E-value=0.00026  Score=76.88  Aligned_cols=56  Identities=16%  Similarity=0.325  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE--EEEc--CC--eEEEcCeEEEccCCC
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV--LLLA--EG--KILSSHLIIDAMGNF  260 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~--v~~~--~G--~~i~a~lVV~AdG~~  260 (535)
                      ..|.+.|.+.+.+.|++|+.+++|++|..++++++  +...  +|  .++.||.||.|....
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~  279 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR  279 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence            35677888888888999999999999988877643  2222  34  368999999987743

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.32  E-value=0.00025  Score=74.37  Aligned_cols=32  Identities=41%  Similarity=0.649  Sum_probs=30.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +||+||| |++|+++|..|++.|.+|+|+|+..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~   34 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRN   34 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            7999999 9999999999999999999999864

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.29  E-value=0.0032  Score=67.73  Aligned_cols=93  Identities=20%  Similarity=0.248  Sum_probs=69.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |+.|+-+|..|++.|.+|+|+|+...                     ++.          .+.          
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~---------------------~l~----------~~~----------  198 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANFGSKVTILEAASL---------------------FLP----------RED----------  198 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC---------------------CCC----------CcC----------
Confidence            799999 99999999999999999999998621                     000          000          


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                    ..+.+.+.+.+.+.|++++.+++|++++.+++.+.+..+++ ++.+|.||.|.|..
T Consensus       199 --------------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~  253 (441)
T PRK08010        199 --------------RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQ  253 (441)
T ss_pred             --------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCC
Confidence                          01113455666778999999999999977666666665444 58999999999953

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.29  E-value=0.0023  Score=68.42  Aligned_cols=94  Identities=21%  Similarity=0.262  Sum_probs=68.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |++|+.+|..|++.|.+|+++++......                 ..++                      
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~-----------------~~~~----------------------  178 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN-----------------KLFD----------------------  178 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc-----------------cccC----------------------
Confidence            3799999 99999999999999999999997621000                 0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+.+.|++++.+++|+++..+ +.+ +.+.+|+++.+|.||.|+|..
T Consensus       179 ---------------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~-v~~~~g~~i~~D~vi~a~G~~  232 (427)
T TIGR03385       179 ---------------EEMNQIVEEELKKHEINLRLNEEVDSIEGE-ERV-KVFTSGGVYQADMVILATGIK  232 (427)
T ss_pred             ---------------HHHHHHHHHHHHHcCCEEEeCCEEEEEecC-CCE-EEEcCCCEEEeCEEEECCCcc
Confidence                           011133455566789999999999998643 333 445578889999999999963

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.28  E-value=0.0003  Score=76.42  Aligned_cols=34  Identities=32%  Similarity=0.388  Sum_probs=31.4

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ...+||||| |++|++||..|...|++|+|+|...
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd   48 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD   48 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence            368999999 9999999999999999999999763

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.28  E-value=0.00022  Score=77.95  Aligned_cols=59  Identities=20%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ..+.+.|.+.+++.|++|+.+++|++|..++++ +.|.+++|+++.||.||.|.+.....
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~  278 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTY  278 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence            467888999999999999999999999877665 45677778889999999998864433

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.26  E-value=0.0028  Score=68.11  Aligned_cols=95  Identities=16%  Similarity=0.238  Sum_probs=67.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |++|+-+|..|++.|.+|.++++...     .                +.         ..+.         
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~-----~----------------l~---------~~~~---------  190 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR-----I----------------LP---------DSFD---------  190 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc-----c----------------Cc---------hhcC---------
Confidence            4799999 99999999999999999999987520     0                00         0000         


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+++.|++++.+++|+++..+++...+.+ ++.++.+|.||.|+|..
T Consensus       191 ---------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~  245 (444)
T PRK09564        191 ---------------KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVK  245 (444)
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCC
Confidence                           11224455666778999999999999854332233444 45579999999999964

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.24  E-value=0.0016  Score=75.44  Aligned_cols=97  Identities=21%  Similarity=0.228  Sum_probs=71.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .++||| |+.|+-+|..|++.|.+|.|+|+.+..            +..    .+ +                       
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l------------l~~----~l-d-----------------------  186 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML------------MAE----QL-D-----------------------  186 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc------------hhh----hc-C-----------------------
Confidence            689999 999999999999999999999986210            000    00 0                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC--eEEEEEcCCeEEEcCeEEEccCCChH
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~--gv~v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                                    ...-+.+.+.+++.|++++.++.++++..+++  ...+.+.+|+++.+|+||.|.|....
T Consensus       187 --------------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn  246 (847)
T PRK14989        187 --------------QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ  246 (847)
T ss_pred             --------------HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence                          00113455666778999999999999965432  34566778889999999999997644

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.24  E-value=0.0016  Score=65.80  Aligned_cols=42  Identities=19%  Similarity=0.127  Sum_probs=36.8

Q ss_pred             CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          219 GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       219 G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      +.+|..++.|..|..-++|+.++..||++-+.|.||.|+-..
T Consensus       231 ~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~d  272 (447)
T COG2907         231 RGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPD  272 (447)
T ss_pred             cceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChH
Confidence            457999999999999999999998889888899999998644

>PRK02106 choline dehydrogenase; Validated

Probab=97.23  E-value=0.0003  Score=78.08  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=31.9

Q ss_pred             CcccEEEEc-chHHHHHHHHHHH-CCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSF-KGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr-~G~~V~liEr~~  142 (535)
                      .+||+|||| |++|+.+|..|++ .|++|+|||++.
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            369999999 9999999999999 799999999984

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.20  E-value=0.0036  Score=68.16  Aligned_cols=94  Identities=20%  Similarity=0.309  Sum_probs=67.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHH---CCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          111 FDVIVCG-GTLGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr---~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      -.|+||| |+.|+-+|..++.   .|.+|+|+|+.+..-.                 . ++                   
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-----------------~-~d-------------------  230 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-----------------G-FD-------------------  230 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-----------------c-cC-------------------
Confidence            3699999 9999999976654   4999999997621000                 0 00                   


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCC
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                        ..+.+.+.+.+++.|++++.++.|+++..++++ ..+.+.+|+++.+|.||.|+|.
T Consensus       231 ------------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~  286 (486)
T TIGR01423       231 ------------------STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR  286 (486)
T ss_pred             ------------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence                              011134555666789999999999999765444 4566667778999999999995

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13748 putative mercuric reductase; Provisional

Probab=97.19  E-value=0.004  Score=69.14  Aligned_cols=91  Identities=24%  Similarity=0.264  Sum_probs=68.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |+.|+-+|..|++.|.+|+|+++..+..                  . +++                      
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~------------------~-~d~----------------------  310 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARLGSKVTILARSTLFF------------------R-EDP----------------------  310 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc------------------c-cCH----------------------
Confidence            699999 9999999999999999999998752100                  0 000                      


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     .+.+.+.+.+++.|++++.+++|++++.+++.+.+.+.++ ++.+|.||.|.|.
T Consensus       311 ---------------~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~  363 (561)
T PRK13748        311 ---------------AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGR  363 (561)
T ss_pred             ---------------HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCC
Confidence                           0113344555678999999999999976666666666444 6999999999995

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.19  E-value=0.0038  Score=67.99  Aligned_cols=92  Identities=16%  Similarity=0.169  Sum_probs=67.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .++||| |+.|+-+|..|++.|.+|+|+++..+..                  ++ +.                      
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~------------------~~-d~----------------------  220 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR------------------GF-DQ----------------------  220 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc------------------cc-CH----------------------
Confidence            699999 9999999999999999999998641110                  00 10                      


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---eEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G---~~i~a~lVV~AdG~  259 (535)
                                     .+.+.+.+.+++.|++++.++.++++...++++.+++.++   +++.+|.||.|.|.
T Consensus       221 ---------------~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~  277 (484)
T TIGR01438       221 ---------------DCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR  277 (484)
T ss_pred             ---------------HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecC
Confidence                           0113344556677999999999988876556666666554   47999999999994

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.19  E-value=0.0035  Score=67.72  Aligned_cols=93  Identities=25%  Similarity=0.320  Sum_probs=68.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.++||| |+.|+-+|..|++.|.+|+|||+.+..               +   ..++++                    
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l---------------l---~~~d~~--------------------  211 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL---------------L---RHLDED--------------------  211 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc---------------c---cccCHH--------------------
Confidence            3799999 999999999999999999999976210               0   000000                    


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                       +.+.+.+ ..+.+++++.+++|++++.+++++.+.+.+|+++.+|.||.|+|.
T Consensus       212 -----------------~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~  263 (452)
T TIGR03452       212 -----------------ISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR  263 (452)
T ss_pred             -----------------HHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc
Confidence                             0011222 224578999999999997766677777777778999999999995

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.18  E-value=0.003  Score=66.46  Aligned_cols=97  Identities=26%  Similarity=0.377  Sum_probs=71.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |++|+.+|..|+++|++|+++|+......            .+     +     .                 
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~------------~~-----~-----~-----------------  177 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG------------QL-----L-----D-----------------  177 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch------------hh-----h-----h-----------------
Confidence            5899999 99999999999999999999998732111            00     0     0                 


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---EEEcCCeEEEcCeEEEccCCCh
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~---v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                     ..+.+.+.+...+.|++++.++++.+++...+...   +...++..+.+|+++.+.|..-
T Consensus       178 ---------------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p  237 (415)
T COG0446         178 ---------------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP  237 (415)
T ss_pred             ---------------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence                           11114455666778899999999999977655433   3555678899999999999543

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.15  E-value=0.00043  Score=74.71  Aligned_cols=41  Identities=12%  Similarity=0.215  Sum_probs=35.6

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       220 ~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      ++|+.+++|++|..++++++|++++|+++.||.||.|.-..
T Consensus       238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~  278 (462)
T TIGR00562       238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK  278 (462)
T ss_pred             CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence            57899999999998888888888778789999999998753

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.12  E-value=0.00056  Score=79.62  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=31.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      ..||+||| ||||+++|+.|++.|++|+|+|+...
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~  571 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK  571 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            47999999 99999999999999999999998753

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.11  E-value=0.00059  Score=68.31  Aligned_cols=36  Identities=39%  Similarity=0.572  Sum_probs=32.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      .+|.+||| |.+|+.+|..|++.|.+|+||||...-|
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG   37 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG   37 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence            38999999 9999999999999999999999986433

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.07  E-value=0.00048  Score=75.42  Aligned_cols=33  Identities=36%  Similarity=0.567  Sum_probs=31.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      |||+||| ||+|+++|..|+++|++|+|||++..
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~   34 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAA   34 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCc
Confidence            6999999 99999999999999999999999843

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.06  E-value=0.0071  Score=64.13  Aligned_cols=41  Identities=17%  Similarity=0.118  Sum_probs=30.8

Q ss_pred             EEEeCceEEEEEEe--CCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          221 VIFEGYSVSSICTY--ENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       221 ~i~~~~~V~~i~~~--~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      ..+..++++++...  ..+..+...+|.+..||.+|.|+|+.-
T Consensus       122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~  164 (474)
T COG4529         122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSA  164 (474)
T ss_pred             eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCC
Confidence            34456677777665  445677778898999999999999654

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.05  E-value=0.0051  Score=66.17  Aligned_cols=91  Identities=16%  Similarity=0.221  Sum_probs=66.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+|+|+....               +   ..++                      
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l---------------~---~~~d----------------------  188 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI---------------N---KLMD----------------------  188 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc---------------c---hhcC----------------------
Confidence            3799999 999999999999999999999986210               0   0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++  ++  .+.+++|+++.+|.||.|.|..
T Consensus       189 ---------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~~--~v~~~~g~~~~~D~vl~a~G~~  240 (438)
T PRK13512        189 ---------------ADMNQPILDELDKREIPYRLNEEIDAIN--GN--EVTFKSGKVEHYDMIIEGVGTH  240 (438)
T ss_pred             ---------------HHHHHHHHHHHHhcCCEEEECCeEEEEe--CC--EEEECCCCEEEeCEEEECcCCC
Confidence                           0011334555667899999999999984  23  3455677789999999999953

>PLN02268 probable polyamine oxidase

Probab=97.05  E-value=0.00064  Score=72.89  Aligned_cols=41  Identities=20%  Similarity=0.119  Sum_probs=36.3

Q ss_pred             CCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       218 ~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                      .+..|+.+++|++|..++++++|++.+|+++.||.||.|.-
T Consensus       209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P  249 (435)
T PLN02268        209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVP  249 (435)
T ss_pred             ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecC
Confidence            46689999999999988889999888888899999999974

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.04  E-value=0.0061  Score=66.18  Aligned_cols=92  Identities=17%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      +|+||| |+.|+-+|..|++.|.+|+|||+.+..-.                 . ++                       
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~-----------------~-~d-----------------------  214 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP-----------------A-AD-----------------------  214 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC-----------------c-CC-----------------------
Confidence            799999 99999999999999999999998721000                 0 00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC--C--eEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~--G--~~i~a~lVV~AdG~  259 (535)
                                    ..+.+.+.+.+.+. +.++.++.|++++.+++++.+.+.+  +  +++.+|.||.|.|.
T Consensus       215 --------------~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~  272 (471)
T PRK06467        215 --------------KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR  272 (471)
T ss_pred             --------------HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc
Confidence                          00112334444455 8889999999997766777666543  2  46999999999995

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.03  E-value=0.0082  Score=60.17  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=29.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      -||||| |.||++++..+-..|-.|+|+|+..-
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s   43 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGS   43 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCC
Confidence            599999 99999999999999888999999853

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.00067  Score=72.29  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=31.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      .|+|+| |+|||+||+.||++|++|+|+|++...|
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G   36 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG   36 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence            599999 9999999999999999999999986544

>PTZ00058 glutathione reductase; Provisional

Probab=97.01  E-value=0.0075  Score=66.77  Aligned_cols=94  Identities=16%  Similarity=0.192  Sum_probs=67.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+....               +   ..++                      
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i---------------l---~~~d----------------------  277 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL---------------L---RKFD----------------------  277 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc---------------c---ccCC----------------------
Confidence            3699999 999999999999999999999986200               0   0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCC-eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG-KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G-~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+++.|++++.++.|.+++.+++ ++.+...++ +++.+|.||.|+|.
T Consensus       278 ---------------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr  334 (561)
T PTZ00058        278 ---------------ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGR  334 (561)
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCC
Confidence                           00113344556677999999999999975543 455554343 57999999999994

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.99  E-value=0.0012  Score=71.66  Aligned_cols=36  Identities=36%  Similarity=0.483  Sum_probs=32.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHH--CCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSF--KGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr--~G~~V~liEr~~~~~  145 (535)
                      ..+|+||| ||+|+.+|..|++  .|++|+|+|+.+..+
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            46899999 9999999999997  799999999997544

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.98  E-value=0.0026  Score=65.30  Aligned_cols=66  Identities=20%  Similarity=0.277  Sum_probs=55.8

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChHHHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVK  265 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~v~~  265 (535)
                      ...+++..+...|.+.+.+.|++++.+++|+++..+++++. |.+.+| +++||.||.|+|+++....
T Consensus       131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~  197 (337)
T TIGR02352       131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGELL  197 (337)
T ss_pred             CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhcc
Confidence            45589999999999999999999999999999988776654 555555 7999999999999987643

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=96.96  E-value=0.00085  Score=72.35  Aligned_cols=63  Identities=21%  Similarity=0.297  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-E-EEEEcCCe-----EEEcCeEEEccCCChHHHHHhCC
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-A-VLLLAEGK-----ILSSHLIIDAMGNFSPVVKQAFP  269 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v-~v~~~~G~-----~i~a~lVV~AdG~~S~v~~~~~p  269 (535)
                      ..+.+.+.+.+.+.|++|+.+++|++|..++++ + .|.+.+|+     ++.||.||.|....  ....++|
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~--~~~~lL~  282 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD--IFKLLLP  282 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH--HHHhhCc
Confidence            345677777777789999999999999765555 3 25554454     79999999998753  2344444

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.0062  Score=61.38  Aligned_cols=43  Identities=26%  Similarity=0.439  Sum_probs=35.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNI  152 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~i  152 (535)
                      +||.|||| |-+|+++|-.+|..|.+|+++|--........|.+
T Consensus        19 dyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGl   62 (503)
T KOG4716|consen   19 DYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGL   62 (503)
T ss_pred             CccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCcccc
Confidence            79999999 99999999999999999999986543333445653

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.90  E-value=0.0015  Score=61.51  Aligned_cols=37  Identities=32%  Similarity=0.546  Sum_probs=31.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGR  146 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~  146 (535)
                      +.|||||| |-+|+++||..+++  .++|++||....+++
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG  115 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG  115 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence            46999999 99999999999965  789999999865543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.85  E-value=0.0025  Score=68.83  Aligned_cols=65  Identities=26%  Similarity=0.333  Sum_probs=46.0

Q ss_pred             chhhhhHHHHHhhHhHHhhhcccCccccccceeecCCCCCCCCCCCCCCCCcccEEEEc-chHHHHHHHHHHHCCCcEEE
Q 009427           59 GGAYSYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAI  137 (535)
Q Consensus        59 gg~~~~~~l~~~d~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~l  137 (535)
                      |+......|+++-.-|.... +...+.. +   .              .....||+||| |++|+++|..|++.|++|+|
T Consensus       101 ~~~v~i~~l~~~~~~~~~~~-~~~~~~~-~---~--------------~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~v  161 (449)
T TIGR01316       101 GKPVSIGALERFVADWERQH-GIETEPE-K---A--------------PSTHKKVAVIGAGPAGLACASELAKAGHSVTV  161 (449)
T ss_pred             CCCccHHHHHHHHHhHHHhc-CCCcCCC-C---C--------------CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence            55677788888776665433 1100000 0   0              11247999999 99999999999999999999


Q ss_pred             EcccC
Q 009427          138 VERNT  142 (535)
Q Consensus       138 iEr~~  142 (535)
                      +|+..
T Consensus       162 ie~~~  166 (449)
T TIGR01316       162 FEALH  166 (449)
T ss_pred             EecCC
Confidence            99975

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.85  E-value=0.0012  Score=69.45  Aligned_cols=35  Identities=37%  Similarity=0.515  Sum_probs=31.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      -+++||| |++|+.+|+.||+.|++|.|+||.+.-+
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG  160 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG  160 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            4799999 9999999999999999999999996443

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.79  E-value=0.0011  Score=73.23  Aligned_cols=34  Identities=32%  Similarity=0.544  Sum_probs=32.0

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..+||+|||| |.+|+++|..|+..|++|+|||++
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            3479999999 999999999999999999999998

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.75  E-value=0.011  Score=65.87  Aligned_cols=59  Identities=14%  Similarity=0.249  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE----E-EEcCCe--EEEcCeEEEccCCChHH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV----L-LLAEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~----v-~~~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      ..+...|.+++.+.|+++++++.++++..++++.+    + ...+|+  .+.|+.||.|+|.+..+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence            56888899988888999999999999987544322    2 223453  58999999999998754

>PLN02676 polyamine oxidase

Probab=96.74  E-value=0.0018  Score=70.52  Aligned_cols=55  Identities=15%  Similarity=0.215  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHhC------CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          205 AKLIEIVKKRFISL------GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       205 ~~l~~~L~~~a~~~------G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      ..+.+.|.+.+.+.      +..|+.+++|++|..++++++|++.+|++++||.||.|...
T Consensus       224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl  284 (487)
T PLN02676        224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL  284 (487)
T ss_pred             HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence            34555665554332      25799999999999988999999988989999999999874

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=96.73  E-value=0.0016  Score=65.47  Aligned_cols=32  Identities=44%  Similarity=0.640  Sum_probs=30.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      +|||+||| |.+|+++|+.|+++|.++.||-++
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g   34 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG   34 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence            59999999 999999999999999999999887

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.72  E-value=0.0021  Score=69.82  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=31.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      ..+|+||| |++|+++|..|++.|++|+|+|+.+.
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~  177 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR  177 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            47999999 99999999999999999999999753

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=96.67  E-value=0.023  Score=61.37  Aligned_cols=93  Identities=22%  Similarity=0.230  Sum_probs=65.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+|+|+.+...                  ..++                      
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------~~~d----------------------  209 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL------------------PLED----------------------  209 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC------------------cchh----------------------
Confidence            3799999 9999999999999999999999872100                  0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G--~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+. ++++.++++++++.+++ .++++..++  .++.+|.||.|.|.
T Consensus       210 ---------------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~  266 (460)
T PRK06292        210 ---------------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGR  266 (460)
T ss_pred             ---------------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCC
Confidence                           00113344455566 88999999999975544 455433333  57999999999995

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.65  E-value=0.0077  Score=62.39  Aligned_cols=137  Identities=18%  Similarity=0.248  Sum_probs=80.3

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccCCCCCccccc-----ccHHHHHHHHHcCCCChHhHHHHHhhhcCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTLKGREQEWN-----ISRKELLELVESGILVEDDIDEATATKFNP  181 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~~~~~~~~~~-----is~~~l~~L~~lGl~~~~~~~~~~~~~~~~  181 (535)
                      ..+|+|.|| ||.-+++|+.|...+ .+++.+||.+--.++...-     +...-+..|.               ..-+|
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLV---------------Tl~~P   68 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLV---------------TLVDP   68 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhc---------------cccCC
Confidence            369999999 999999999999885 7899999986433322111     1111122221               11112


Q ss_pred             C-cccccc----cCccee-eeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-Ce-EE--EEEcCCeEEEcC
Q 009427          182 N-RCGFEG----KGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NA-AV--LLLAEGKILSSH  251 (535)
Q Consensus       182 ~-~~~~~~----~~~~~~-~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~g-v~--v~~~~G~~i~a~  251 (535)
                      . ...|..    .+.+|. .....+.+.+..+.+.+.-.+... -.++++++|++|..-+ |. ..  +.+.++.+++|+
T Consensus        69 Ts~ySFLNYL~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar  147 (436)
T COG3486          69 TSPYSFLNYLHEHGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRAR  147 (436)
T ss_pred             CCchHHHHHHHHcchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEee
Confidence            1 111110    111111 011123355666667776666665 6678899999773322 22 22  444566789999


Q ss_pred             eEEEccCCCh
Q 009427          252 LIIDAMGNFS  261 (535)
Q Consensus       252 lVV~AdG~~S  261 (535)
                      -+|+..|..-
T Consensus       148 ~lVlg~G~~P  157 (436)
T COG3486         148 NLVLGVGTQP  157 (436)
T ss_pred             eEEEccCCCc
Confidence            9999999654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.65  E-value=0.0021  Score=72.72  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      ..+|+||| ||+|+++|..|++.|++|+|+|+...
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~  361 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE  361 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            46999999 99999999999999999999999753

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.65  E-value=0.002  Score=74.23  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=30.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ...|+||| ||||+++|+.|++.|++|+|+|+..
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            46899999 9999999999999999999999853

>PLN02785 Protein HOTHEAD

Probab=96.65  E-value=0.0018  Score=71.96  Aligned_cols=34  Identities=38%  Similarity=0.559  Sum_probs=31.3

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..+||+|||| |.+|+.+|..|++ +.+|+|||++.
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~   87 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG   87 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence            4469999999 9999999999999 69999999985

>PLN02546 glutathione reductase

Probab=96.63  E-value=0.021  Score=63.28  Aligned_cols=93  Identities=16%  Similarity=0.156  Sum_probs=65.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      +|+||| |..|+-+|..|++.|.+|+|+|+......                 ++ +                       
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-----------------~~-d-----------------------  292 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-----------------GF-D-----------------------  292 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-----------------cc-C-----------------------
Confidence            699999 99999999999999999999997621000                 00 0                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                    ..+.+.+.+.+.+.|++++.++.++++...+++ +.+.+.++....+|.||.|.|.
T Consensus       293 --------------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~  348 (558)
T PLN02546        293 --------------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGR  348 (558)
T ss_pred             --------------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecc
Confidence                          001133455566789999999999999754333 4555544444558999999995

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.61  E-value=0.0022  Score=69.73  Aligned_cols=54  Identities=15%  Similarity=0.172  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeC--Ce---EE-EEEcCC---eEEEcCeEEEccCCC
Q 009427          207 LIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---AV-LLLAEG---KILSSHLIIDAMGNF  260 (535)
Q Consensus       207 l~~~L~~~a~~~G~~i~~~~~V~~i~~~~--~g---v~-v~~~~G---~~i~a~lVV~AdG~~  260 (535)
                      +.+.+.+.+++.|++|+.+++|++|+.++  ++   ++ |.+.+|   +++.||.||.|+..+
T Consensus       221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            45667788888999999999999998754  22   22 234333   568999999999965

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02529 lysine-specific histone demethylase 1

Probab=96.55  E-value=0.003  Score=71.67  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=31.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ...||+||| |++|+++|..|+++|++|+|+|+..
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~  193 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN  193 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence            357999999 9999999999999999999999963

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.55  E-value=0.0031  Score=72.01  Aligned_cols=34  Identities=29%  Similarity=0.505  Sum_probs=31.8

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ...+|+||| |++|+++|+.|++.|++|+|+|+..
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~  271 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA  271 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            358999999 9999999999999999999999974

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.54  E-value=0.01  Score=62.52  Aligned_cols=104  Identities=17%  Similarity=0.185  Sum_probs=64.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      -.||||| |.+|+.+|..|+++-  .+|+||||+..--.       ...+.+.              .....++.     
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~-------~plL~ev--------------a~g~l~~~-----   57 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLF-------TPLLYEV--------------ATGTLSES-----   57 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcccc-------chhhhhh--------------hcCCCChh-----
Confidence            4699999 999999999999974  89999999832111       0011110              00111111     


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                        .+..-+.+-+...+ +.+. ..+|++|+.+..  +|.++++.++..|.+|+|.|+..
T Consensus        58 ------------------~i~~p~~~~~~~~~~v~~~-~~~V~~ID~~~k--~V~~~~~~~i~YD~LVvalGs~~  111 (405)
T COG1252          58 ------------------EIAIPLRALLRKSGNVQFV-QGEVTDIDRDAK--KVTLADLGEISYDYLVVALGSET  111 (405)
T ss_pred             ------------------heeccHHHHhcccCceEEE-EEEEEEEcccCC--EEEeCCCccccccEEEEecCCcC
Confidence                              11111333334344 5555 558999866554  44555667899999999999764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.51  E-value=0.0054  Score=66.50  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=31.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      ..+|+||| ||+|+++|..|++.|++|+|+|+.+.
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~  175 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE  175 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            46999999 99999999999999999999998853

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.51  E-value=0.026  Score=63.61  Aligned_cols=93  Identities=15%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |..|+-.|..|++.|.+|+|||+......                 + ++.                      
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-----------------~-~d~----------------------  353 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-----------------L-LDA----------------------  353 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc-----------------c-CCH----------------------
Confidence            699999 99999999999999999999998621000                 0 000                      


Q ss_pred             cceeeeccccccCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCe--EEEEEcC-------C--------eEEEcCe
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENA--AVLLLAE-------G--------KILSSHL  252 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a-~~~G~~i~~~~~V~~i~~~~~g--v~v~~~~-------G--------~~i~a~l  252 (535)
                                     .+.+.+.+.. .+.|++++.++.|++++.++++  +.+.+.+       +        +++.+|.
T Consensus       354 ---------------eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~  418 (659)
T PTZ00153        354 ---------------DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDS  418 (659)
T ss_pred             ---------------HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCE
Confidence                           0012222222 3578999999999999765433  5554321       1        2699999


Q ss_pred             EEEccCC
Q 009427          253 IIDAMGN  259 (535)
Q Consensus       253 VV~AdG~  259 (535)
                      ||.|+|.
T Consensus       419 VlvAtGr  425 (659)
T PTZ00153        419 CLVATGR  425 (659)
T ss_pred             EEEEECc
Confidence            9999995

>TIGR01810 betA choline dehydrogenase

Probab=96.51  E-value=0.0019  Score=71.23  Aligned_cols=31  Identities=32%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCC-CcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKG-LRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~  142 (535)
                      |+|||| |.+|+.+|..|++.| ++|+|||++.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~   33 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG   33 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence            899999 999999999999998 7999999984

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PLN02612 phytoene desaturase

Probab=96.51  E-value=0.0034  Score=69.79  Aligned_cols=62  Identities=21%  Similarity=0.367  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE--EEEEcCCeEEEcCeEEEccCCChHHHHHhCC
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQAFP  269 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv--~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p  269 (535)
                      .+.+.|.+.+.+.|++|+.+++|++|+.++++.  .+.+.+|+++.||.||.|+..  .+.+.++|
T Consensus       309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~--~~l~~Ll~  372 (567)
T PLN02612        309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV--DILKLLLP  372 (567)
T ss_pred             HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH--HHHHHhCc
Confidence            455667777777899999999999998866663  256667888999999999864  34444333

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.48  E-value=0.03  Score=58.76  Aligned_cols=58  Identities=16%  Similarity=0.154  Sum_probs=47.8

Q ss_pred             cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-eEEEcCeEEEccCCCh
Q 009427          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFS  261 (535)
Q Consensus       202 v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G-~~i~a~lVV~AdG~~S  261 (535)
                      -....+++.|..++.+.|++++.+++|++|  ++++..+.+.++ ..++||.||+|+|..|
T Consensus        83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            356788999999999999999999999998  444566766433 5699999999999765

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.47  E-value=0.025  Score=57.40  Aligned_cols=37  Identities=35%  Similarity=0.500  Sum_probs=33.0

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc-CCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN-TLKG  145 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~-~~~~  145 (535)
                      .+||.+||| |-.|++.|...+..|.+|.|+|.. .+++
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGG   57 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGG   57 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCc
Confidence            379999999 999999999999999999999987 4443

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.39  E-value=0.0041  Score=66.31  Aligned_cols=53  Identities=17%  Similarity=0.276  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCeEEEcCeEEEcc
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGKILSSHLIIDAM  257 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G~~i~a~lVV~Ad  257 (535)
                      ..|-|...+.+.=.|+.+..++.|.++..++++..+.+ .+|++++|+.||+..
T Consensus       232 GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dp  285 (438)
T PF00996_consen  232 GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDP  285 (438)
T ss_dssp             THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEG
T ss_pred             ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECC
Confidence            46778888877778999999999999988776655433 378899999999543

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.37  E-value=0.013  Score=61.81  Aligned_cols=96  Identities=26%  Similarity=0.364  Sum_probs=72.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      --|+++| |..|+-+|..|...+.+|++|++.+-.            +..+                  |.+        
T Consensus       214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~------------~~~l------------------f~~--------  255 (478)
T KOG1336|consen  214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL------------LPRL------------------FGP--------  255 (478)
T ss_pred             ceEEEECchHHHHHHHHHHHhcCceEEEEccCccc------------hhhh------------------hhH--------
Confidence            3499999 999999999999999999999986211            0001                  110        


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                      .+-+...+..++.|++++.++.+.+++.+++|  ..|.+.+|.++.||+||.+.|+.
T Consensus       256 ----------------~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~  312 (478)
T KOG1336|consen  256 ----------------SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIK  312 (478)
T ss_pred             ----------------HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccc
Confidence                            01144555567789999999999999877754  34667889999999999999964

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.35  E-value=0.0046  Score=69.91  Aligned_cols=34  Identities=32%  Similarity=0.355  Sum_probs=31.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      ..+|+||| ||+|+++|+.|++.|++|+|+|+...
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~  227 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ  227 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            46999999 99999999999999999999999753

>PLN02487 zeta-carotene desaturase

Probab=96.31  E-value=0.0052  Score=68.00  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeC--Ce---E-EEEE---cCCeEEEcCeEEEccCCC
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYE--NA---A-VLLL---AEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~--~g---v-~v~~---~~G~~i~a~lVV~AdG~~  260 (535)
                      .+.+.+.+.+++.|++|+.+++|.+|..+.  ++   + -+.+   .+++++.+|.||.|.+.+
T Consensus       296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            466778888889999999999999998873  33   2 2344   234568999999999965

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.28  E-value=0.029  Score=61.66  Aligned_cols=88  Identities=22%  Similarity=0.224  Sum_probs=62.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |+.|+-+|..|++.|.+|+|+|+...                     + ..   .                 
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~---------------------l-~~---~-----------------  390 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE---------------------L-KA---D-----------------  390 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc---------------------C-Ch---h-----------------
Confidence            3799999 99999999999999999999986510                     0 00   0                 


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEcC---C--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~-v~~~~---G--~~i~a~lVV~AdG~  259 (535)
                                         +.+.+.+.+ .|++++.++.++++..+++.+. |.+.+   |  +++.+|.||.|.|.
T Consensus       391 -------------------~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~  448 (515)
T TIGR03140       391 -------------------KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL  448 (515)
T ss_pred             -------------------HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence                               012223333 5899999999999865444433 44432   2  46999999999995

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10262 thioredoxin reductase; Provisional

Probab=96.17  E-value=0.04  Score=56.46  Aligned_cols=92  Identities=16%  Similarity=0.120  Sum_probs=63.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++++.....                   . + .                    
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-------------------~-~-~--------------------  185 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-------------------A-E-K--------------------  185 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-------------------C-C-H--------------------
Confidence            3799999 9999999999999999999999862100                   0 0 0                    


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcC----C--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAE----G--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~----G--~~i~a~lVV~AdG~  259 (535)
                                      .+.+.+.+++++.|++++.++.++++..+++++ .|++.+    +  +++.+|.||.|.|.
T Consensus       186 ----------------~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~  246 (321)
T PRK10262        186 ----------------ILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH  246 (321)
T ss_pred             ----------------HHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence                            001223444556788999999999986544332 233322    1  46999999999995

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.08  E-value=0.0079  Score=67.86  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=31.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      ..+|+||| ||+|+++|..|++.|++|+|+|+...
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~  344 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE  344 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            46899999 99999999999999999999999864

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.03  E-value=0.062  Score=53.94  Aligned_cols=88  Identities=20%  Similarity=0.182  Sum_probs=61.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|.++++.+.                +   .. .                      
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~----------------~---~~-~----------------------  179 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK----------------F---RA-E----------------------  179 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc----------------c---Cc-C----------------------
Confidence            4799999 99999999999999999999987520                0   00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEc---CC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~---~G--~~i~a~lVV~AdG~  259 (535)
                                         ..+.+.+.+. |++++.++.++++..++....+.+.   +|  .++.+|.||.|+|.
T Consensus       180 -------------------~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  236 (300)
T TIGR01292       180 -------------------KILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGH  236 (300)
T ss_pred             -------------------HHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence                               0122334445 8899999999998654321223321   23  57999999999994

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.01  E-value=0.0091  Score=64.20  Aligned_cols=54  Identities=35%  Similarity=0.415  Sum_probs=40.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---------cccHHHHHHHHHcC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---------NISRKELLELVESG  164 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---------~is~~~l~~L~~lG  164 (535)
                      -.|.||| ||+|+++|..|++.|+.|+++|+....++--.+         ++..+.++.|.+.|
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G  187 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG  187 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC
Confidence            5799999 999999999999999999999998644431111         14445666666656

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.98  E-value=0.0096  Score=64.15  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=30.9

Q ss_pred             cccEEEEc-chHHHHHHHHH-HHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATAL-SFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~L-Ar~G~~V~liEr~~~~~  145 (535)
                      ...|+||| ||+|+.+|..| ++.|++|.|+||.+.++
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            35799999 99999999975 56799999999997554

>PRK13984 putative oxidoreductase; Provisional

Probab=95.93  E-value=0.017  Score=64.78  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=32.4

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      ...+|+||| |++|+++|..|+++|++|+|+|+....
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~  318 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP  318 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            357899999 999999999999999999999987543

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.93  E-value=0.0082  Score=66.72  Aligned_cols=34  Identities=32%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      .-+|+||| ||+|+++|..|++.|++|+|+|+.+.
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~  171 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK  171 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            35899999 99999999999999999999998753

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.85  E-value=0.011  Score=64.33  Aligned_cols=33  Identities=33%  Similarity=0.455  Sum_probs=31.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..+|+||| |++|+++|..|++.|++|+|+|+..
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~  176 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED  176 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            36999999 9999999999999999999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.85  E-value=0.082  Score=57.09  Aligned_cols=31  Identities=26%  Similarity=0.231  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+++.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~  304 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRR  304 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence            3799999 999999999999999999999876

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=95.81  E-value=0.086  Score=57.00  Aligned_cols=31  Identities=32%  Similarity=0.330  Sum_probs=28.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      -.|+||| |..|+-+|..|++.|. +|+++++.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~  306 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR  306 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            4799999 9999999999999998 89999875

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.77  E-value=0.093  Score=54.75  Aligned_cols=47  Identities=28%  Similarity=0.364  Sum_probs=36.5

Q ss_pred             HHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          210 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       210 ~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      .+.+.+.+.|++++.+++++++.  ++  .+.+.+|.++.+|.||.|.|..
T Consensus       196 ~~~~~l~~~gV~v~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~  242 (364)
T TIGR03169       196 LVLRLLARRGIEVHEGAPVTRGP--DG--ALILADGRTLPADAILWATGAR  242 (364)
T ss_pred             HHHHHHHHCCCEEEeCCeeEEEc--CC--eEEeCCCCEEecCEEEEccCCC
Confidence            34555667899999999999874  33  3556678889999999999954

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.74  E-value=0.2  Score=51.98  Aligned_cols=130  Identities=18%  Similarity=0.130  Sum_probs=67.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC--cEEEEcccCCCCC--cccc---cccHHHHHHHHHcCCCChHhHHHHHhhhcCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL--RVAIVERNTLKGR--EQEW---NISRKELLELVESGILVEDDIDEATATKFNP  181 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~~~~~~--~~~~---~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~  181 (535)
                      ...|+||| |-++.-++..|.+.+-  +|.++=|.+.-..  ....   -.++..++.+..  + +.+.-...+. ... 
T Consensus       190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~--l-~~~~R~~~l~-~~~-  264 (341)
T PF13434_consen  190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYS--L-PDEERRELLR-EQR-  264 (341)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHT--S--HHHHHHHHH-HTG-
T ss_pred             CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhc--C-CHHHHHHHHH-HhH-
Confidence            57899999 9999999999999875  7988887741110  0000   023333333321  1 1111111111 111 


Q ss_pred             CcccccccCcceeeeccccccCHHHH---HHHHHHH-HH-hCCCEEEeCceEEEEEEeCC-eEEEEEcC---C--eEEEc
Q 009427          182 NRCGFEGKGEIWVEDILNLGVSPAKL---IEIVKKR-FI-SLGGVIFEGYSVSSICTYEN-AAVLLLAE---G--KILSS  250 (535)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~v~~~~l---~~~L~~~-a~-~~G~~i~~~~~V~~i~~~~~-gv~v~~~~---G--~~i~a  250 (535)
                                    .....+|++..+   .+.+.++ +. +.-..++.+++|++++..++ ++.+++.+   +  .++.+
T Consensus       265 --------------~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~  330 (341)
T PF13434_consen  265 --------------HTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEV  330 (341)
T ss_dssp             --------------GGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEE
T ss_pred             --------------hhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEec
Confidence                          001122343322   2222222 22 12468999999999998884 78888754   2  56899


Q ss_pred             CeEEEccC
Q 009427          251 HLIIDAMG  258 (535)
Q Consensus       251 ~lVV~AdG  258 (535)
                      |.||.|||
T Consensus       331 D~VilATG  338 (341)
T PF13434_consen  331 DAVILATG  338 (341)
T ss_dssp             SEEEE---
T ss_pred             CEEEEcCC
Confidence            99999999

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.73  E-value=0.026  Score=56.95  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=31.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      --|.||| |.||.-+|+.+|++|++|.|.|=.+...
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~   39 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG   39 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence            3588999 9999999999999999999999775443

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=95.70  E-value=0.087  Score=54.86  Aligned_cols=30  Identities=27%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCc-EEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLR-VAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~  141 (535)
                      .|+||| |..|+-+|..|++.|.+ |+|+++.
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~  205 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR  205 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence            699999 99999999999999997 9999875

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=95.64  E-value=0.059  Score=53.72  Aligned_cols=53  Identities=19%  Similarity=0.157  Sum_probs=38.8

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~  264 (535)
                      +..+..+++..|.+++.++|+++.. .+|++++.-        .+   -.+|+||.|+|-++...
T Consensus       146 ~~sE~~~ylpyl~k~l~e~Gvef~~-r~v~~l~E~--------~~---~~~DVivNCtGL~a~~L  198 (342)
T KOG3923|consen  146 YLSEGPKYLPYLKKRLTENGVEFVQ-RRVESLEEV--------AR---PEYDVIVNCTGLGAGKL  198 (342)
T ss_pred             eeccchhhhHHHHHHHHhcCcEEEE-eeeccHHHh--------cc---CCCcEEEECCccccccc
Confidence            4456788999999999999998773 466665321        01   35899999999887543

>PLN03000 amine oxidase

Probab=95.63  E-value=0.015  Score=66.64  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=31.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..||+||| |++|+++|..|++.|++|+|+|+..
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~  217 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK  217 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            58999999 9999999999999999999999974

>PLN02976 amine oxidase

Probab=95.57  E-value=0.015  Score=69.21  Aligned_cols=34  Identities=29%  Similarity=0.512  Sum_probs=31.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ...||+||| |++|+++|+.|++.|++|+|+|+..
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~  726 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARS  726 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeecc
Confidence            358999999 9999999999999999999999874

>PRK12831 putative oxidoreductase; Provisional

Probab=95.47  E-value=0.14  Score=55.61  Aligned_cols=31  Identities=32%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |.+|+-+|..|.+.|.+|+|+++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~  313 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRR  313 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence            4799999 999999999999999999999876

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=95.43  E-value=0.013  Score=64.25  Aligned_cols=35  Identities=34%  Similarity=0.496  Sum_probs=32.0

Q ss_pred             CCCcccEEEEc-chHHHHHHHHHHHC-CCcEEEEccc
Q 009427          107 AVGTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERN  141 (535)
Q Consensus       107 ~~~~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~  141 (535)
                      ....||.|||| |.||+.+|..|++. .++|+|+|++
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaG   90 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAG   90 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecC
Confidence            44479999999 99999999999997 6899999998

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.26  E-value=0.056  Score=56.07  Aligned_cols=56  Identities=21%  Similarity=0.207  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      ..|-++-.++.++.|+.++-+..|.++......+++.++||.+++.|+||+|.|.-
T Consensus       393 eyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~e  448 (659)
T KOG1346|consen  393 EYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEE  448 (659)
T ss_pred             HHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCC
Confidence            33446777888888999999999999988778889999999999999999999964

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.23  E-value=0.14  Score=56.31  Aligned_cols=87  Identities=17%  Similarity=0.156  Sum_probs=61.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      +|+||| |..|+-+|..|+..|.+|+|+++.....                   . +                       
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~-------------------~-~-----------------------  389 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK-------------------A-D-----------------------  389 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-------------------c-c-----------------------
Confidence            799999 9999999999999999999998762100                   0 0                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEc---CC--eEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~-v~~~---~G--~~i~a~lVV~AdG~  259 (535)
                                        ..+.+...+ .|++++.++.++++..+++.++ +.+.   +|  .++.+|.|+.|.|.
T Consensus       390 ------------------~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~  447 (517)
T PRK15317        390 ------------------QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL  447 (517)
T ss_pred             ------------------HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence                              011222223 4889999999999875544332 3332   23  36999999999995

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.15  E-value=0.17  Score=55.03  Aligned_cols=30  Identities=23%  Similarity=0.256  Sum_probs=25.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      .|+||| |..|+-+|..+.+.|. +|++++..
T Consensus       283 ~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~  314 (471)
T PRK12810        283 HVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM  314 (471)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence            699999 9999999999999986 68866654

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=95.01  E-value=0.074  Score=53.51  Aligned_cols=35  Identities=43%  Similarity=0.525  Sum_probs=29.6

Q ss_pred             CCCcccEEEEc-chHHHHHHHHHHHC-CC-cEEEEccc
Q 009427          107 AVGTFDVIVCG-GTLGIFIATALSFK-GL-RVAIVERN  141 (535)
Q Consensus       107 ~~~~~DVvIVG-G~aGl~~A~~LAr~-G~-~V~liEr~  141 (535)
                      +..++.|+||| |.+|+.+|..+.++ |. +|.|||..
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~   73 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA   73 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence            34579999999 99999999999876 43 79999876

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=94.88  E-value=0.39  Score=51.54  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=29.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC----CCcEEEEcccCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFK----GLRVAIVERNTLK  144 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~----G~~V~liEr~~~~  144 (535)
                      -++=||| |+|+|++|..|-|.    |-+|.|+|+....
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~   41 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP   41 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence            4688999 99999999999987    6799999998543

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=94.72  E-value=0.036  Score=57.79  Aligned_cols=33  Identities=30%  Similarity=0.383  Sum_probs=29.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcE--EEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRV--AIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V--~liEr~~  142 (535)
                      ..+|+||| |++||++|++|++++.+|  +|+|..+
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~   46 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP   46 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence            47999999 999999999999998876  4589874

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=94.63  E-value=0.084  Score=58.70  Aligned_cols=95  Identities=21%  Similarity=0.360  Sum_probs=68.0

Q ss_pred             EEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccCc
Q 009427          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKGE  191 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (535)
                      .+||| |..|+-+|..|...|.+|.|++=.+            ..++          ..++..                 
T Consensus       148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~------------~lMe----------rQLD~~-----------------  188 (793)
T COG1251         148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAP------------TLME----------RQLDRT-----------------  188 (793)
T ss_pred             cEEEccchhhhHHHHHHHhCCCceEEEeecc------------hHHH----------HhhhhH-----------------
Confidence            68999 9999999999999999999997431            0010          011100                 


Q ss_pred             ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          192 IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       192 ~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                              .+       +.|.+...+.|.+++.+...+.+..++.-..+.++||..+.|++||-|+|..-
T Consensus       189 --------ag-------~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrP  243 (793)
T COG1251         189 --------AG-------RLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRP  243 (793)
T ss_pred             --------HH-------HHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccccc
Confidence                    00       34666667789999888777776543333457888999999999999999753

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.44  E-value=0.038  Score=57.14  Aligned_cols=39  Identities=33%  Similarity=0.406  Sum_probs=35.4

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      ++.||||||| |..=..+|.+++|.|.+|+=+|++..-|+
T Consensus         6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg   45 (547)
T KOG4405|consen    6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG   45 (547)
T ss_pred             chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence            4479999999 99999999999999999999999986654

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=94.42  E-value=0.3  Score=58.05  Aligned_cols=89  Identities=16%  Similarity=0.107  Sum_probs=62.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      -.|+||| |+.|+.+|..|++.|. .|+|+|..+..               .                            
T Consensus       318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------------~----------------------------  354 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------------S----------------------------  354 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------------h----------------------------
Confidence            3799999 9999999999999996 47888865100               0                            


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC--eEEEEEc--CCeEEEcCeEEEccCCChH
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--AAVLLLA--EGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~--gv~v~~~--~G~~i~a~lVV~AdG~~S~  262 (535)
                                          ..+.+++++.|++++.++.++.+..++.  ++++...  +++++.||.|+.+.|....
T Consensus       355 --------------------~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pn  412 (985)
T TIGR01372       355 --------------------PEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPV  412 (985)
T ss_pred             --------------------HHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCch
Confidence                                0122344567899999999988854332  2333321  3467999999999997643

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=94.16  E-value=0.41  Score=55.19  Aligned_cols=31  Identities=32%  Similarity=0.305  Sum_probs=28.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCc-EEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~  141 (535)
                      -.|+||| |.+|+-+|..+.+.|.+ |+|+++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~  603 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR  603 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence            3799999 99999999999999997 9999876

>TIGR02730 carot_isom carotene isomerase

Probab=94.06  E-value=0.19  Score=54.85  Aligned_cols=34  Identities=41%  Similarity=0.681  Sum_probs=31.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      ||||||| |++|+++|..||++|++|+|+||+...
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~   35 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP   35 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            6999999 999999999999999999999998543

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.92  E-value=0.061  Score=50.77  Aligned_cols=30  Identities=37%  Similarity=0.519  Sum_probs=25.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|+.+|..||+.|++|+.+|.+
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~   32 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDID   32 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence            488999 999999999999999999999987

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=93.56  E-value=0.66  Score=52.56  Aligned_cols=31  Identities=32%  Similarity=0.314  Sum_probs=28.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      -.|+||| |..|+-+|..+.+.|. +|+|+++.
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~  356 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRR  356 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            4799999 9999999999999997 59999876

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=93.53  E-value=0.093  Score=54.04  Aligned_cols=36  Identities=28%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~  145 (535)
                      ...|+||| ||||..+|..|-++  ++.|.|+|+.+.+.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF   58 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF   58 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence            34799999 99999999998884  79999999997654

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=93.13  E-value=0.12  Score=48.47  Aligned_cols=29  Identities=38%  Similarity=0.560  Sum_probs=27.2

Q ss_pred             EEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          113 VIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      |.||| |..|...|..+++.|++|.++|++
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~   31 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS   31 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            78999 999999999999999999999987

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=93.09  E-value=0.46  Score=49.20  Aligned_cols=95  Identities=19%  Similarity=0.275  Sum_probs=66.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -..+||| |..|+-.+..-.+.|-+|+++|-..--+                  +.++. |    +              
T Consensus       212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~------------------~~mD~-E----i--------------  254 (506)
T KOG1335|consen  212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG------------------GVMDG-E----I--------------  254 (506)
T ss_pred             ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc------------------cccCH-H----H--------------
Confidence            3689999 9999999999999999999999652100                  10110 0    0              


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcC---C--eEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE---G--KILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~---G--~~i~a~lVV~AdG~~  260 (535)
                                        -....+-+.+.|..+..+++|+.++.+.| .+.+++.+   +  ++++||.+.+|.|..
T Consensus       255 ------------------sk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr  313 (506)
T KOG1335|consen  255 ------------------SKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR  313 (506)
T ss_pred             ------------------HHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence                              01111223346899999999999998887 45555532   3  579999999999954

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=92.85  E-value=1.1  Score=48.77  Aligned_cols=31  Identities=23%  Similarity=0.183  Sum_probs=28.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      -.|+||| |..|+-+|..+.+.|. +|+|+++.
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~  315 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRR  315 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEec
Confidence            4799999 9999999999999996 69999876

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=92.74  E-value=0.13  Score=59.40  Aligned_cols=34  Identities=29%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      -..|.||| ||+|+++|-.|-|.|+.|+|.||..-
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence            36899999 99999999999999999999999843

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=92.74  E-value=0.79  Score=54.07  Aligned_cols=31  Identities=32%  Similarity=0.311  Sum_probs=28.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -+|+||| |.+|+-+|..+.+.|.+|+++.+.
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr  479 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR  479 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence            3799999 999999999999999999999876

>TIGR02734 crtI_fam phytoene desaturase

Probab=92.72  E-value=0.46  Score=51.91  Aligned_cols=32  Identities=31%  Similarity=0.494  Sum_probs=29.7

Q ss_pred             EEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      ||||| |++||++|+.|++.|++|+|+|++...
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~   33 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP   33 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            68999 999999999999999999999998543

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=92.71  E-value=0.85  Score=50.68  Aligned_cols=31  Identities=29%  Similarity=0.337  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |.+|+-+|..|++.|.+|+++++.
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~  175 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVRE  175 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeC
Confidence            4799999 999999999999999999999986

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=92.47  E-value=0.17  Score=51.92  Aligned_cols=36  Identities=33%  Similarity=0.597  Sum_probs=33.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      .|||+|.| |+.=+.++..|+..|.+|+.|||+..-|
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG   42 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG   42 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence            69999999 9999999999999999999999996544

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.32  E-value=0.14  Score=55.22  Aligned_cols=32  Identities=34%  Similarity=0.419  Sum_probs=29.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      .|+||| |++|+++|..|+++|++|.+.|+...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            389999 99999999999999999999998743

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=92.31  E-value=0.17  Score=46.37  Aligned_cols=29  Identities=31%  Similarity=0.492  Sum_probs=28.0

Q ss_pred             EEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          113 VIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      |.|+| |..|.++|..|+++|++|.|..++
T Consensus         2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~   31 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADNGHEVTLWGRD   31 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred             EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence            78999 999999999999999999999887

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=92.28  E-value=0.19  Score=53.35  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=29.9

Q ss_pred             EEEeCceEEEEEEeC-CeEEEEEcCCeEEEcCeEEEcc
Q 009427          221 VIFEGYSVSSICTYE-NAAVLLLAEGKILSSHLIIDAM  257 (535)
Q Consensus       221 ~i~~~~~V~~i~~~~-~gv~v~~~~G~~i~a~lVV~Ad  257 (535)
                      +++.+++|..|..++ +.+++++.||+.+.||.||+.-
T Consensus       245 ~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTv  282 (498)
T KOG0685|consen  245 RIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTV  282 (498)
T ss_pred             hhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEe
Confidence            344568999997664 5688999999999999999874

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.21  E-value=1.3  Score=50.32  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=27.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      -.|+||| |..|+-+|..+.+.|. +|+++.+.
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~  501 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR  501 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec
Confidence            3799999 9999999999999997 69998875

>PRK04148 hypothetical protein; Provisional

Probab=92.09  E-value=0.41  Score=42.59  Aligned_cols=30  Identities=23%  Similarity=0.397  Sum_probs=27.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.+++|| | .|...|..|++.|++|+.+|.+
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~   48 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDIN   48 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECC
Confidence            3599999 9 8999999999999999999987

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.91  E-value=0.22  Score=44.86  Aligned_cols=29  Identities=31%  Similarity=0.638  Sum_probs=27.7

Q ss_pred             EEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          113 VIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      |+|+| |..|+..|..|++.|++|.++.|.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~   30 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS   30 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence            68999 999999999999999999999887

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=91.61  E-value=0.22  Score=48.58  Aligned_cols=31  Identities=32%  Similarity=0.629  Sum_probs=29.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +++||| |..|...|..|++.|+.|++||++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            589999 9999999999999999999999984

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.32  E-value=0.23  Score=50.77  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=28.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      +|.||| |..|...|..|+++|++|+++|+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~   34 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDAD   34 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCC
Confidence            699999 999999999999999999999987

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=90.81  E-value=0.12  Score=53.61  Aligned_cols=35  Identities=37%  Similarity=0.585  Sum_probs=32.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      ++|||||.| |..=+.++..|+..|.+|+.+||+..
T Consensus         3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~y   38 (440)
T KOG1439|consen    3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDY   38 (440)
T ss_pred             CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCC
Confidence            359999999 99999999999999999999999953

>PLN02612 phytoene desaturase

Probab=90.73  E-value=0.87  Score=50.72  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=31.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..+|+||| |++|+++|+.|+++|++|+|+|+..
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~  126 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD  126 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence            47899999 9999999999999999999999974

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.72  E-value=0.26  Score=53.57  Aligned_cols=31  Identities=39%  Similarity=0.558  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |.+|+.+|..|+++|++|.++|+.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~   48 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDG   48 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3699999 999999999999999999999976

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=90.33  E-value=2.2  Score=50.40  Aligned_cols=31  Identities=32%  Similarity=0.354  Sum_probs=27.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC-C-CcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK-G-LRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~-G-~~V~liEr~  141 (535)
                      -.|+||| |.+|+-+|..+.+. | .+|.|+.+.
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr  702 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR  702 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEcc
Confidence            3799999 99999999998887 5 389999986

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=90.25  E-value=2.4  Score=50.14  Aligned_cols=31  Identities=32%  Similarity=0.403  Sum_probs=27.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC-CC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK-GL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~-G~-~V~liEr~  141 (535)
                      -.|+||| |.+|+-+|..+.+. |. +|.++++.
T Consensus       667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr  700 (1012)
T TIGR03315       667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR  700 (1012)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEcc
Confidence            4799999 99999999998886 86 79999986

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=90.00  E-value=1.5  Score=46.09  Aligned_cols=52  Identities=23%  Similarity=0.268  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccCCC
Q 009427          207 LIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF  260 (535)
Q Consensus       207 l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG~~  260 (535)
                      +.+...+...+.|+.+..++.|..+  ++..+.+.+.+|  ++|..-++|-|+|..
T Consensus       275 l~~yae~~f~~~~I~~~~~t~Vk~V--~~~~I~~~~~~g~~~~iPYG~lVWatG~~  328 (491)
T KOG2495|consen  275 LVEYAENQFVRDGIDLDTGTMVKKV--TEKTIHAKTKDGEIEEIPYGLLVWATGNG  328 (491)
T ss_pred             HHHHHHHHhhhccceeecccEEEee--cCcEEEEEcCCCceeeecceEEEecCCCC
Confidence            3344455556678999999999987  445566666666  468888999999853

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=89.65  E-value=0.52  Score=40.27  Aligned_cols=29  Identities=34%  Similarity=0.669  Sum_probs=27.6

Q ss_pred             EEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          113 VIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      |+||| |..|..+|..|.+.+.+|+++|++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d   30 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD   30 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            68999 999999999999988899999998

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=89.58  E-value=0.57  Score=48.92  Aligned_cols=50  Identities=18%  Similarity=0.211  Sum_probs=40.2

Q ss_pred             HHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          211 VKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       211 L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      +...+...|++|+.+++|++|+.+++++.+.+.+|++++||.||.|....
T Consensus       215 ~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~  264 (450)
T PF01593_consen  215 LALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPS  264 (450)
T ss_dssp             HHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HH
T ss_pred             HHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchh
Confidence            33334445779999999999999999999999999999999999998743

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.55  E-value=0.88  Score=49.67  Aligned_cols=37  Identities=38%  Similarity=0.635  Sum_probs=33.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      .+|||||| |+.||++|+.||++|++|+|+||+...++
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG   40 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG   40 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence            58999999 99999999999999999999999865443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.53  E-value=0.42  Score=48.32  Aligned_cols=30  Identities=40%  Similarity=0.624  Sum_probs=28.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|+++|++|.++|++
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~   35 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS   35 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence            599999 999999999999999999999976

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.53  E-value=0.42  Score=48.26  Aligned_cols=30  Identities=27%  Similarity=0.553  Sum_probs=28.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|+++|++|.++|++
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~   33 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK   33 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCC
Confidence            489999 999999999999999999999987

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=89.46  E-value=0.35  Score=50.54  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHHCCCcEEEEcccC
Q 009427          119 TLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       119 ~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ++||+||+.|+++|++|+|+|+..
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~   24 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASD   24 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSS
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCC
Confidence            589999999999999999999984

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=89.44  E-value=0.44  Score=43.74  Aligned_cols=32  Identities=41%  Similarity=0.537  Sum_probs=27.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      .++|+| |..|..+|..|...|.+|.|.|.+|.
T Consensus        25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi   57 (162)
T PF00670_consen   25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPI   57 (162)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred             EEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence            599999 99999999999999999999999853

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN02676 polyamine oxidase

Probab=89.28  E-value=0.91  Score=49.57  Aligned_cols=33  Identities=36%  Similarity=0.521  Sum_probs=30.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~  142 (535)
                      .+||+||| |++|+++|+.|+++|. +|+|+|+..
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~   60 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATD   60 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCC
Confidence            58999999 9999999999999998 599999974

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.20  E-value=0.46  Score=48.89  Aligned_cols=31  Identities=19%  Similarity=0.208  Sum_probs=29.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|.||| |..|...|..++..|++|.++|+.+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            599999 9999999999999999999999873

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.10  E-value=0.46  Score=48.06  Aligned_cols=31  Identities=32%  Similarity=0.413  Sum_probs=29.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|.||| |..|...|..+++.|++|+++|+.+
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   38 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE   38 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence            699999 9999999999999999999999873

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=89.03  E-value=0.97  Score=47.63  Aligned_cols=60  Identities=22%  Similarity=0.228  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCeEEEcCeEEEccCCChHHHHHhCC
Q 009427          208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGKILSSHLIIDAMGNFSPVVKQAFP  269 (535)
Q Consensus       208 ~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G~~i~a~lVV~AdG~~S~v~~~~~p  269 (535)
                      .+.|.+.+.+.|++|+.+++|++|+.+++++++.+ .+|+++.||.||.|.-..  ....++|
T Consensus       200 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~--~~~~ll~  260 (419)
T TIGR03467       200 PEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR--HAASLLP  260 (419)
T ss_pred             HHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH--HHHHhCC
Confidence            34467777778999999999999998888766544 367789999999987643  3344444

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=89.02  E-value=0.56  Score=44.81  Aligned_cols=34  Identities=29%  Similarity=0.604  Sum_probs=30.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~  143 (535)
                      ...|+||| |-.|..+|..|++.|+ +++|+|.+.+
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v   56 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV   56 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            36799999 9999999999999999 5999998844

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=88.85  E-value=1.7  Score=48.50  Aligned_cols=59  Identities=10%  Similarity=0.237  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---E-EEcCC--eEEEcCeEEEccCCChHH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---L-LLAEG--KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~---v-~~~~G--~~i~a~lVV~AdG~~S~v  263 (535)
                      ..+...|.+++.+.|+++++++.++++..+++.++   + ...+|  ..+.|+.||.|+|.++.+
T Consensus       119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~  183 (565)
T TIGR01816       119 HAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI  183 (565)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence            46788899989889999999999999987654332   2 12345  368999999999998754

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=88.27  E-value=1.6  Score=46.93  Aligned_cols=36  Identities=39%  Similarity=0.636  Sum_probs=33.3

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      +++||||||| |.+|+.+|..|++.|.+|+++|++..
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~   38 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPY   38 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCC
Confidence            3479999999 99999999999999999999999853

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.11  E-value=0.6  Score=47.26  Aligned_cols=30  Identities=33%  Similarity=0.450  Sum_probs=28.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|++.|++|.++|++
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~   35 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVS   35 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCC
Confidence            499999 999999999999999999999987

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.11  E-value=0.6  Score=47.25  Aligned_cols=30  Identities=30%  Similarity=0.383  Sum_probs=28.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|+++|++|.++|++
T Consensus         6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~   36 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS   36 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence            599999 999999999999999999999987

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=87.91  E-value=0.59  Score=48.77  Aligned_cols=30  Identities=27%  Similarity=0.461  Sum_probs=28.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|++.|..||+.|++|+.+|.+
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid   32 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDID   32 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence            478999 999999999999999999999987

>PRK13984 putative oxidoreductase; Provisional

Probab=87.66  E-value=4.9  Score=45.10  Aligned_cols=37  Identities=11%  Similarity=-0.053  Sum_probs=29.0

Q ss_pred             ccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHh
Q 009427          336 AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       336 ~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~  378 (535)
                      +..++|+++||+++..      .+..|+.++..+|..|++.|.
T Consensus       566 Ts~~gVfAaGD~~~~~------~~v~Ai~~G~~AA~~I~~~L~  602 (604)
T PRK13984        566 TSIPWLFAGGDIVHGP------DIIHGVADGYWAAEGIDMYLR  602 (604)
T ss_pred             cCCCCEEEecCcCCch------HHHHHHHHHHHHHHHHHHHhc
Confidence            3357899999998643      356689999999999888774

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=87.55  E-value=0.65  Score=47.41  Aligned_cols=31  Identities=32%  Similarity=0.511  Sum_probs=29.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|+|+| |..|...|..|++.|.+|.++.|.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            4699999 999999999999999999999985

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.37  E-value=0.71  Score=46.47  Aligned_cols=30  Identities=33%  Similarity=0.459  Sum_probs=28.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..++++|++|+++|++
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~   35 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS   35 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCC
Confidence            599999 999999999999999999999987

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=87.26  E-value=0.69  Score=46.89  Aligned_cols=29  Identities=28%  Similarity=0.369  Sum_probs=27.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVER  140 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr  140 (535)
                      .|.|+| |..|...|..|++.|++|.+++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            489999 99999999999999999999987

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=87.23  E-value=0.65  Score=49.62  Aligned_cols=31  Identities=29%  Similarity=0.337  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|+.+|..|+++|++|.++|++
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~   35 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDIN   35 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCC
Confidence            3599999 999999999999999999999987

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=87.20  E-value=5.5  Score=45.11  Aligned_cols=31  Identities=19%  Similarity=0.075  Sum_probs=27.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      -.|+||| |..|+-+|..+.+.|. +|+++++.
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr  484 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRR  484 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence            4799999 9999999998889995 79999875

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=87.18  E-value=5.1  Score=47.77  Aligned_cols=31  Identities=26%  Similarity=0.217  Sum_probs=27.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCc-EEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~  141 (535)
                      -.|+||| |.+|+-+|..+.+.|.+ |+++.+.
T Consensus       572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            4799999 99999999999999985 7777764

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=87.14  E-value=4.2  Score=45.78  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=37.4

Q ss_pred             HHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       215 a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ++++|++++.+.+|+.|..  +.-+|.++.|.++..|.+|.|+|....+
T Consensus        69 y~~~~i~L~~~~~v~~idr--~~k~V~t~~g~~~~YDkLilATGS~pfi  115 (793)
T COG1251          69 YEENGITLYTGEKVIQIDR--ANKVVTTDAGRTVSYDKLIIATGSYPFI  115 (793)
T ss_pred             HHHcCcEEEcCCeeEEecc--CcceEEccCCcEeecceeEEecCccccc
Confidence            4578999999999999854  3445667788899999999999965433

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=87.01  E-value=0.79  Score=40.61  Aligned_cols=34  Identities=24%  Similarity=0.537  Sum_probs=29.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK  144 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~  144 (535)
                      ..|+|+| |-.|..+|..|++.|. ++.|+|.+.+.
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE   38 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence            4699999 9999999999999999 69999998654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.96  E-value=0.71  Score=49.71  Aligned_cols=31  Identities=29%  Similarity=0.475  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+|+| |.+|+.+|..|++.|++|+++|+.
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~   37 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEK   37 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4699999 999999999999999999999986

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=86.86  E-value=0.84  Score=46.71  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|.+.|..|++.|++|.++.|+
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~   37 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS   37 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            4699999 999999999999999999999886

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=86.85  E-value=2.4  Score=46.20  Aligned_cols=34  Identities=32%  Similarity=0.548  Sum_probs=31.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      -|||||| |++|+++|+.|+++|++|+|+|++...
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4899999 999999999999999999999999533

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=86.60  E-value=0.99  Score=46.82  Aligned_cols=34  Identities=32%  Similarity=0.572  Sum_probs=30.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK  144 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~  144 (535)
                      ..|+||| |-.|..+|..|++.|+ +++|+|++.+.
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve   60 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE   60 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            5799999 9999999999999998 79999998543

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=86.42  E-value=0.84  Score=46.16  Aligned_cols=30  Identities=30%  Similarity=0.571  Sum_probs=28.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|++.|++|.+++|+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            489999 999999999999999999999985

>TIGR02731 phytoene_desat phytoene desaturase

Probab=86.23  E-value=2.1  Score=45.99  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=29.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +|+||| |++|+++|+.|+++|++|+|+|+..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~   32 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARD   32 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            489999 9999999999999999999999885

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=86.23  E-value=0.75  Score=49.02  Aligned_cols=30  Identities=30%  Similarity=0.417  Sum_probs=28.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|+.+|..|++.|++|+++|++
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~   32 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDID   32 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECC
Confidence            488999 999999999999999999999987

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=86.06  E-value=0.85  Score=47.10  Aligned_cols=30  Identities=27%  Similarity=0.604  Sum_probs=28.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|++.|++|.+++|.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            599999 999999999999999999999975

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=85.98  E-value=1.3  Score=39.67  Aligned_cols=32  Identities=31%  Similarity=0.622  Sum_probs=29.1

Q ss_pred             EEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427          113 VIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK  144 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~  144 (535)
                      |+||| |-.|..+|..|++.|. ++.|+|.+.+.
T Consensus         2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~   35 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE   35 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence            89999 9999999999999998 69999988544

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR00518 alaDH alanine dehydrogenase

Probab=85.62  E-value=0.95  Score=47.57  Aligned_cols=32  Identities=31%  Similarity=0.364  Sum_probs=29.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..+|+|+| |.+|..+|..|.+.|.+|.++|+.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            35799999 999999999999999999999986

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=85.55  E-value=1.2  Score=42.54  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=31.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~  144 (535)
                      +..|+||| |-.|..+|..|++.|. ++.|+|.+.+.
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve   57 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD   57 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEc
Confidence            46799999 9999999999999998 79999998543

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=85.51  E-value=1.1  Score=41.05  Aligned_cols=30  Identities=27%  Similarity=0.492  Sum_probs=27.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|-+|| |-.|...|..|+++|++|.+.|+.
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~   33 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRS   33 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred             EEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence            588999 999999999999999999999987

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=85.50  E-value=4.6  Score=43.13  Aligned_cols=43  Identities=26%  Similarity=0.279  Sum_probs=35.6

Q ss_pred             HHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          215 FISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       215 a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      .++.|.+++.++.|+.++....  ++.+.+|+.+..+.+|+|+|.
T Consensus       137 Yke~gIe~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs  179 (478)
T KOG1336|consen  137 YKEKGIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS  179 (478)
T ss_pred             HhhcCceEEEcceeEEeecccc--EEEeCCCceeecceEEEeecC
Confidence            3456899999999999976554  455668999999999999997

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=85.40  E-value=0.97  Score=48.08  Aligned_cols=31  Identities=32%  Similarity=0.402  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+|+| |+.|+.+|..+...|.+|+++|++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d  234 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD  234 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4799999 999999999999999999999987

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=85.28  E-value=1.2  Score=44.45  Aligned_cols=35  Identities=23%  Similarity=0.499  Sum_probs=30.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~  144 (535)
                      ...|+||| |-.|..+|..|++.|. +++|+|.+.+.
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~   66 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC   66 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence            35799999 9999999999999995 79999988543

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=84.84  E-value=5.8  Score=41.41  Aligned_cols=43  Identities=26%  Similarity=0.278  Sum_probs=32.7

Q ss_pred             hCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChH
Q 009427          217 SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       217 ~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                      +.++.++.+++|+++...  .-++.+.+| ++..|.+|.|+|+.-.
T Consensus        65 ~~~i~~~~~~~v~~id~~--~~~v~~~~g-~~~yd~LvlatGa~~~  107 (415)
T COG0446          65 ATGIDVRTGTEVTSIDPE--NKVVLLDDG-EIEYDYLVLATGARPR  107 (415)
T ss_pred             hhCCEEeeCCEEEEecCC--CCEEEECCC-cccccEEEEcCCCccc
Confidence            457899999999998543  334555566 8899999999998643

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=84.82  E-value=1.3  Score=40.96  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=28.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ...|+|+| |.+|..+|..|...|.+|.++|..
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~   52 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER   52 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence            36899999 999999999999999999999976

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=84.69  E-value=1.2  Score=45.23  Aligned_cols=30  Identities=30%  Similarity=0.434  Sum_probs=28.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|++.|++|.++|++
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~   36 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSD   36 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence            499999 999999999999999999999987

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=84.68  E-value=1.3  Score=41.19  Aligned_cols=31  Identities=32%  Similarity=0.495  Sum_probs=28.6

Q ss_pred             EEEEc-chHHHHHHHHHHHCCCc-EEEEcccCC
Q 009427          113 VIVCG-GTLGIFIATALSFKGLR-VAIVERNTL  143 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~  143 (535)
                      |+||| |-.|..+|..|++.|.. ++|+|.+.+
T Consensus         2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   34 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV   34 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            89999 99999999999999995 999998854

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.54  E-value=1.2  Score=45.51  Aligned_cols=30  Identities=33%  Similarity=0.581  Sum_probs=28.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|++.|++|.++|++
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~   36 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVM   36 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            599999 999999999999999999999976

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=84.52  E-value=1.5  Score=43.14  Aligned_cols=35  Identities=23%  Similarity=0.462  Sum_probs=30.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~  144 (535)
                      ...|+||| |-.|..+|..|++.|. +++|+|.+.+.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS   60 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            36799999 9999999999999997 68899988543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=84.31  E-value=1.3  Score=45.90  Aligned_cols=34  Identities=35%  Similarity=0.558  Sum_probs=30.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~  143 (535)
                      ...|+||| |-.|..+|..|++.|. ++.|+|.+.+
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V   59 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV   59 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence            35799999 9999999999999999 8999999854

>PLN02268 probable polyamine oxidase

Probab=83.87  E-value=2.1  Score=45.81  Aligned_cols=31  Identities=39%  Similarity=0.538  Sum_probs=29.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +||||| |++||++|+.|.+.|++|+|+|+..
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~   33 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRD   33 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            799999 9999999999999999999999874

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=83.77  E-value=1.1  Score=42.18  Aligned_cols=32  Identities=38%  Similarity=0.474  Sum_probs=28.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|+||| |.++.-+|..|++.|.+|.++=|.+
T Consensus       168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            5799999 9999999999999999999998764

...

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=83.56  E-value=1.8  Score=38.44  Aligned_cols=32  Identities=34%  Similarity=0.470  Sum_probs=29.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCc-EEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLR-VAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~  141 (535)
                      .-.|+|+| |-+|-+++..|+..|.+ |.|+.|.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35799999 99999999999999998 9999876

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=83.45  E-value=1.3  Score=44.43  Aligned_cols=30  Identities=27%  Similarity=0.297  Sum_probs=28.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|.+.|..|+++|++|.+++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            488999 999999999999999999999976

>TIGR00936 ahcY adenosylhomocysteinase

Probab=83.39  E-value=1.3  Score=46.92  Aligned_cols=32  Identities=34%  Similarity=0.330  Sum_probs=29.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|+|+| |+.|..+|..|...|.+|+++|+++
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            4799999 9999999999999999999999873

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=83.20  E-value=3.2  Score=44.68  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=30.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC----CCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK----GLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~----G~~V~liEr~~  142 (535)
                      +.||+||| |++||++|+.|+++    |++|+|+|+..
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~   39 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD   39 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence            46999999 99999999999999    99999999974

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=82.95  E-value=1.4  Score=48.26  Aligned_cols=62  Identities=23%  Similarity=0.255  Sum_probs=40.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHH
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDE  173 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~  173 (535)
                      -.|.||| |..|...|..+++.|++|.++|+.+-.- .+....-...++.+.+.|.++.++.+.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l-~~~~~~i~~~l~~~~~~G~~~~~~~~~   68 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEAL-ARAIAGIEARLNSLVTKGKLTAEECER   68 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHH-HHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            3599999 9999999999999999999999873110 000001123445555667555444443

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=82.74  E-value=1.7  Score=41.42  Aligned_cols=31  Identities=29%  Similarity=0.409  Sum_probs=28.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+|+| |-.|..+|..|.+.|.+|++.|++
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3599999 999999999999999999999876

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=82.67  E-value=1.5  Score=44.76  Aligned_cols=30  Identities=30%  Similarity=0.504  Sum_probs=28.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|++.|++|.+++++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~   33 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD   33 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            589999 999999999999999999999986

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=82.64  E-value=1.5  Score=44.71  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=27.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      .|.||| |..|..+|+.|+.+|+ +|+++|..
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~   34 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDVV   34 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            589999 9999999999999887 89999974

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=82.63  E-value=1.4  Score=46.56  Aligned_cols=29  Identities=14%  Similarity=0.267  Sum_probs=26.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|+.+|..+|. |++|+++|++
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d   31 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDIL   31 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECC
Confidence            388999 9999999988885 9999999987

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=82.57  E-value=1.5  Score=44.76  Aligned_cols=30  Identities=33%  Similarity=0.544  Sum_probs=27.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCC--CcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKG--LRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~  141 (535)
                      .|.||| |..|.++|+.|+++|  ..|.++|++
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~   34 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN   34 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            589999 999999999999999  479999987

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=82.50  E-value=1.6  Score=44.97  Aligned_cols=31  Identities=32%  Similarity=0.457  Sum_probs=29.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|...|..|++.|++|.+++|.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~   36 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARR   36 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            3699999 999999999999999999999986

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=82.50  E-value=1.3  Score=39.49  Aligned_cols=30  Identities=23%  Similarity=0.526  Sum_probs=27.2

Q ss_pred             EEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          113 VIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ++|+| |+.+.++|..++..|++|+|+|.++
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            58999 9999999999999999999999773

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=82.41  E-value=1.8  Score=41.47  Aligned_cols=30  Identities=23%  Similarity=0.413  Sum_probs=28.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|+||| |.+|...+..|.+.|.+|+|+++.
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            699999 999999999999999999999875

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=82.40  E-value=1.6  Score=44.96  Aligned_cols=30  Identities=40%  Similarity=0.568  Sum_probs=28.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|.+.|..|++.|++|.+++|+
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            488999 999999999999999999999886

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=82.17  E-value=15  Score=37.46  Aligned_cols=31  Identities=35%  Similarity=0.374  Sum_probs=27.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -||+||| |-+.+-.|+.|++-+-+|.|+=|.
T Consensus       144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~  175 (305)
T COG0492         144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRR  175 (305)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecC
Confidence            3899999 999999999999999999999665

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=82.09  E-value=1.9  Score=42.57  Aligned_cols=34  Identities=29%  Similarity=0.493  Sum_probs=30.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~  143 (535)
                      ...|+||| |..|..+|..|++.|. +++|+|.+.+
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v   67 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV   67 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            36799999 9999999999999998 6999998854

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=81.91  E-value=2  Score=39.28  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |..|..-|..|.+.|.+|+||.+.
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~   45 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE   45 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence            4699999 999999999999999999999643

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=81.80  E-value=2.1  Score=39.76  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=28.8

Q ss_pred             cccEEEEc-ch-HHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GT-LGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~-aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ...|+||| |- +|..+|..|.++|.+|.++.|.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            46899999 85 6999999999999999999876

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=81.70  E-value=2  Score=41.03  Aligned_cols=31  Identities=19%  Similarity=0.281  Sum_probs=28.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |-.|...|..|.+.|.+|+|+++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4799999 999999999999999999999864

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=81.63  E-value=2.2  Score=41.16  Aligned_cols=34  Identities=32%  Similarity=0.471  Sum_probs=30.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCc-EEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLR-VAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~  143 (535)
                      ...|+||| |-.|..+|..|++.|.. +.|+|.+.+
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   63 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV   63 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence            36799999 99999999999999985 999998854

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=81.51  E-value=1.7  Score=47.49  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=29.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .-.|+|+| |++|+.++..+...|.+|.++|.+
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~  197 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR  197 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999 999999999999999999999987

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=81.32  E-value=15  Score=40.90  Aligned_cols=38  Identities=13%  Similarity=0.114  Sum_probs=29.6

Q ss_pred             CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCC
Q 009427          338 FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD  380 (535)
Q Consensus       338 ~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~  380 (535)
                      .++|+++||++..  |   .-+..|+.++..+|..|+..|...
T Consensus       409 ~~~Vfa~GD~~~g--~---~~v~~Av~~G~~aA~~i~~~L~g~  446 (564)
T PRK12771        409 RPGVFAGGDMVPG--P---RTVTTAIGHGKKAARNIDAFLGGE  446 (564)
T ss_pred             CCCEEeccCcCCC--c---hHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5889999999852  2   234578999999999999988643

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=81.31  E-value=3.3  Score=41.77  Aligned_cols=29  Identities=28%  Similarity=0.452  Sum_probs=27.3

Q ss_pred             EEEEc--chHHHHHHHHHHHCCCcEEEEccc
Q 009427          113 VIVCG--GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       113 VvIVG--G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      |+|.|  |..|.-++.+|.+.|++|+|+|.-
T Consensus         3 iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL   33 (329)
T COG1087           3 VLVTGGAGYIGSHTVRQLLKTGHEVVVLDNL   33 (329)
T ss_pred             EEEecCcchhHHHHHHHHHHCCCeEEEEecC
Confidence            78888  999999999999999999999965

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=81.00  E-value=1.7  Score=46.61  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=30.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      ..|+|+| |..|+++|..|.+.|.+|.+.|..+..
T Consensus         8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            4699999 999999999999999999999977543

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=80.96  E-value=1.8  Score=46.95  Aligned_cols=31  Identities=19%  Similarity=0.471  Sum_probs=29.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .+|-||| |..|..+|..|+++|++|.+.+|.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~   33 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRT   33 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4799999 999999999999999999999987

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=80.94  E-value=1.8  Score=47.45  Aligned_cols=63  Identities=27%  Similarity=0.307  Sum_probs=41.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHH
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEAT  175 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~  175 (535)
                      .|.||| |..|...|..|++.|++|.++|+.+-.-. +....-...++.+.+.|.++.++.+...
T Consensus         9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~-~~~~~i~~~l~~~~~~G~~~~~~~~~~~   72 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAA-AARDGIAARLAKLVEKGKLTAEQADAAL   72 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            499999 99999999999999999999998731100 0001112345556666766655544433

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=80.91  E-value=1.9  Score=46.90  Aligned_cols=30  Identities=20%  Similarity=0.376  Sum_probs=27.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCC--CcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKG--LRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~  141 (535)
                      .|.||| |..|+.+|..||++|  ++|+.+|.+
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~   35 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS   35 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence            599999 999999999999984  789999977

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=80.76  E-value=2.3  Score=41.42  Aligned_cols=35  Identities=29%  Similarity=0.510  Sum_probs=30.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~  144 (535)
                      ...|+||| |-.|..+|..|++.|. +++|+|.+.+.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve   57 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVE   57 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEc
Confidence            35799999 9999999999999998 68899988543

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=80.71  E-value=2.3  Score=43.35  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=29.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..|.||| |..|.+.|..|++.|++|.+++|..
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4699999 9999999999999999999999873

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=80.67  E-value=2  Score=43.36  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=27.7

Q ss_pred             EEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          113 VIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      |.||| |..|...|..|++.|++|.++++.
T Consensus         2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~   31 (291)
T TIGR01505         2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIG   31 (291)
T ss_pred             EEEEEecHHHHHHHHHHHHCCCeEEEEcCC
Confidence            78999 999999999999999999999987

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=80.66  E-value=5.7  Score=43.88  Aligned_cols=31  Identities=35%  Similarity=0.384  Sum_probs=28.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |.+|+=+|..|++...+|.+.=|.
T Consensus       184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~  215 (531)
T PF00743_consen  184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRR  215 (531)
T ss_dssp             SEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred             CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence            4799999 999999999999999999998876

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.65  E-value=1.9  Score=46.37  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=28.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|+|+| |.+|+++|..|++.|.+|.+.|+..
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            489999 9999999999999999999999763

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=80.63  E-value=1.8  Score=49.70  Aligned_cols=31  Identities=32%  Similarity=0.322  Sum_probs=29.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|.||| |..|...|..+|+.|++|.|+|.+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~  345 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDIN  345 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCC
Confidence            3599999 999999999999999999999987

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=80.48  E-value=2.3  Score=47.26  Aligned_cols=32  Identities=19%  Similarity=0.480  Sum_probs=30.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      +-+++||| |..|..+|..|.++|++|+++|++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d  449 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETS  449 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECC
Confidence            46899999 999999999999999999999988

>PRK08328 hypothetical protein; Provisional

Probab=80.47  E-value=2.6  Score=41.16  Aligned_cols=34  Identities=32%  Similarity=0.492  Sum_probs=29.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~  143 (535)
                      ...|+||| |-.|..+|..|++.|. ++.|+|.+.+
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            35799999 9999999999999998 5889998754

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=80.46  E-value=7.8  Score=39.20  Aligned_cols=50  Identities=26%  Similarity=0.475  Sum_probs=36.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCCCCcccccccHHHHHHHHHcCC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGI  165 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl  165 (535)
                      =||||| |-.|.-++..|.|.|. ++.|+|-+.+.    ...+.++....+.+.|.
T Consensus        76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVS----lsSLNrHs~Atl~DVG~  127 (430)
T KOG2018|consen   76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVS----LSSLNRHSCATLADVGT  127 (430)
T ss_pred             EEEEEecCchhHHHHHHHHHhcCceEEEechhhcc----HhhhhhhhhhhHhhcCC
Confidence            389999 9999999999999997 58888876321    11234456666666675

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=80.28  E-value=1.9  Score=49.45  Aligned_cols=31  Identities=29%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|.||| |..|...|..+|..|++|+|+|.+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~  345 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDIN  345 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCC
Confidence            4699999 999999999999999999999987

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.25  E-value=2  Score=46.47  Aligned_cols=31  Identities=26%  Similarity=0.374  Sum_probs=29.0

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|.|+| |.+|+++|..|.+.|++|.+.|+..
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            599999 9999999999999999999999763

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=80.23  E-value=2  Score=47.07  Aligned_cols=30  Identities=23%  Similarity=0.388  Sum_probs=28.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|+++|++|.|+|+.
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~   36 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPH   36 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            599999 999999999999999999999986

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=80.19  E-value=1.5  Score=36.93  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=29.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .-.|+||| |..|..-+..|.+.|.+|+|+.+.
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            35799999 999999999999999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	535
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 7e-08
 Identities = 86/543 (15%), Positives = 159/543 (29%), Gaps = 148/543 (27%)

Query: 7   RHFNGVSHF-PSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAG------ 59
           R +N    F    V   +   +    L           R  +++ + G V G+G      
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLEL--------RPAKNVLIDG-VLGSGKTWVAL 168

Query: 60  -GAYSYDALKRLD-QI-WSNI--CSTQTVQQEIQQVVSSNAG--LFSQSDLSDKAVGTFD 112
               SY    ++D +I W N+  C++     E+ Q +         S+SD S        
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 113 VIVCGGTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESG--IL---- 166
            I     L   + +      L   +V  N         N    +          IL    
Sbjct: 229 SIQ--AELRRLLKSKPYENCL---LVLLNV-------QN---AKAWNAFNLSCKILLTTR 273

Query: 167 ---VEDDIDEATATKF--NPNRCGFEGKGEIWVEDIL--NLGVSPAKLIEIVKK---RFI 216
              V D +  AT T    + +        E  V+ +L   L   P  L   V     R +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLT-PDE--VKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 217 SL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPL 275
           S+    I +G     + T++N              H+  D +     +++ +        
Sbjct: 331 SIIAESIRDG-----LATWDN------------WKHVNCDKLTT---IIESSLNVLEPAE 370

Query: 276 DRTTY----MF---TYIDPQAGSPKLEELLERYWDLMPEY-QGVTLDNLEIQRVI----- 322
            R  +    +F    +I      P    LL   W  + +    V ++ L    ++     
Sbjct: 371 YRKMFDRLSVFPPSAHI------P--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 323 ---YGIFPTYRDSPLPA------------AFNRILQFGDASGIQSPVSFGGFGS-LTRHL 366
                I   Y +  +               +N    F D+  +  P     F S +  HL
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSHIGHHL 481

Query: 367 GRLSTGVYEAVRGDFVDSYSLSLLNPYMPNLSASWLFQR---AMSAKQQSDVSPDFINEL 423
                        + +  + +  L+         +L Q+     +A   S    + + +L
Sbjct: 482 -------KNIEHPERMTLFRMVFLD-------FRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 424 -LYVNFQCMQKLGDPVLRPFLQDVIKF----------GPLAKTLGLVMLNKPQ-IIPSIF 471
             Y  + C     DP     +  ++ F                L + ++ + + I     
Sbjct: 528 KFYKPYICDN---DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584

Query: 472 KQV 474
           KQV
Sbjct: 585 KQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 70/576 (12%), Positives = 155/576 (26%), Gaps = 201/576 (34%)

Query: 3   FLQLRHFNGVSHFPSQVHGKRKVSQRCICLQPQAAVPSRTRRIMESISVSGEVGGAGGAY 62
           F+       V   P  +  K ++    I +   A   S T R+  ++    E        
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAV--SGTLRLFWTLLSKQE-------- 76

Query: 63  SYDALKRLDQIWSNICSTQTVQQEIQQVVSSNAGLFSQSDLSDKAVGTFDVIVCGGTLGI 122
                             + VQ+ +++V+  N                            
Sbjct: 77  ------------------EMVQKFVEEVLRINYK-------------------------- 92

Query: 123 FIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN 182
           F+ + +  +  + +++ R  ++ R++ +N                    D     K+N +
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYN--------------------DNQVFAKYNVS 132

Query: 183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL 242
           R          ++  L L      L+E+   + + + GV+  G +  ++    +  V   
Sbjct: 133 R----------LQPYLKL---RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 243 AEGKIL--------SSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKL 294
            + KI         S   +++ +      +   + + S                +   +L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-----RIHSIQAEL 234

Query: 295 EELLERYWDLMPEYQG--VTLDNLEIQRVIYGIFPTYRDSPLPAAFN---RILQFGDASG 349
             LL+        Y+   + L N++  +                AFN   +IL       
Sbjct: 235 RRLLKS-----KPYENCLLVLLNVQNAKAW-------------NAFNLSCKIL------- 269

Query: 350 IQSPVSFGGFGSLTRHLG---RLSTGVYEAVRGD-----FVDSYSLSLLNPYMPNLSASW 401
               +        TR       LS      +  D            SLL          +
Sbjct: 270 ----L-------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--------LKY 310

Query: 402 LFQRAMS-AKQQSDVSP-----------DFIN---ELLYVNF--------QCMQKLGDPV 438
           L  R     ++    +P           D +       +VN           +  L    
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 439 LRP-------FLQDV-IKFGPLAKTLGLVMLN-KPQIIPSIFKQVGIPVLVDWSGHFFML 489
            R        F     I   P    L L+  +     +  +  ++    LV+       +
Sbjct: 371 YRKMFDRLSVFPPSAHI---P-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 490 GYYTLLSTFADPVI------RSLLNAFPPRMKYEWN 519
              ++       +       RS+++ +     ++ +
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	535
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.96
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.92
3atr_A	453	Conserved archaeal protein; saturating double bond	99.92
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.92
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.91
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.91
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.91
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.9
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.9
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.9
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.9
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.89
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.89
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.88
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.87
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.87
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.87
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.86
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.86
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.85
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.85
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.83
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.79
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.78
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.78
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.77
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.7
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.6
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.57
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.46
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.43
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.4
3dme_A	369	Conserved exported protein; structural genomics, P	99.38
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.36
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.35
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.33
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.3
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.3
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.3
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.29
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.26
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.26
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.25
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.23
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.22
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.21
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.16
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.15
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.15
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.14
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.13
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.13
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.12
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.12
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.1
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.09
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.08
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.07
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.07
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.07
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.07
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.06
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.05
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.04
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.02
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.02
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.02
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.01
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.96
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.96
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.95
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.95
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.94
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.93
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.93
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.92
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.92
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.91
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.9
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.9
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.9
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.89
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.89
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.89
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.88
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.88
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.87
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.87
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.87
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.84
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.83
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.81
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.8
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.8
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.78
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.77
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.75
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.75
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.74
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.74
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.7
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.7
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.69
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.68
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.67
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.65
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.64
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.64
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.64
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.59
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.58
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.58
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.56
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.55
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.53
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.52
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.48
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.48
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.48
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.47
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.44
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.42
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.42
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.36
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.36
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.36
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.34
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.34
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.32
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.31
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.31
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.28
4dna_A	463	Probable glutathione reductase; structural genomic	98.28
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.27
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.27
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.26
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.26
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.25
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.25
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.25
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.24
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.22
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.22
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.21
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.21
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.21
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.2
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.2
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.19
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.18
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.15
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.15
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.15
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.15
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.14
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.14
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.13
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.13
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.12
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.11
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.1
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.1
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.09
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.07
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.06
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.04
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.04
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.03
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.03
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.02
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.02
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.01
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.98
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.96
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.95
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.93
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.93
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.92
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.92
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.9
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.87
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.86
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.85
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.83
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.83
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.83
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.81
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.77
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.77
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.77
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.75
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.75
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.75
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.74
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.74
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.73
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.72
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.67
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.65
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.65
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.65
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.64
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.63
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.63
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.62
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.62
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.62
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.62
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.61
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.59
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.54
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.53
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.53
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.53
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.53
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.52
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.52
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.52
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.51
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.49
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.48
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.48
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.47
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.47
4dna_A	463	Probable glutathione reductase; structural genomic	97.45
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.45
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.43
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.43
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.42
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.4
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.4
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.39
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.38
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.38
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.37
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.32
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.28
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.27
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.26
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.22
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.21
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.19
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.15
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.12
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.11
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.1
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.08
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.07
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.06
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.05
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.01
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.98
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.91
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.85
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.85
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.84
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.83
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.82
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.81
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.8
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.79
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.78
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.78
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.76
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.71
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.7
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.68
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.65
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.57
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.57
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.51
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.51
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.49
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.48
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.39
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.39
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.36
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.34
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.31
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.17
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.03
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.89
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	95.66
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	95.63
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.57
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	95.42
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.03
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	94.96
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.78
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.7
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.37
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.35
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	94.21
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	93.98
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	93.82
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.66
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.64
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	93.52
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	93.49
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.44
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	93.35
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	93.25
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	92.59
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.49
3c85_A	183	Putative glutathione-regulated potassium-efflux S	92.07
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	91.8
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	91.45
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	91.1
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	91.1
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	90.75
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.33
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	90.28
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	89.92
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	89.65
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	89.56
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	89.45
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	89.42
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	88.86
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	88.44
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	88.39
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	87.95
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	87.67
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	87.51
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	87.41
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	87.27
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	87.17
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	86.61
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	86.57
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	86.48
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	86.42
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	86.03
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	85.96
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	85.91
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	85.76
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	85.5
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	85.48
4fk1_A	304	Putative thioredoxin reductase; structural genomic	85.29
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	85.14
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	85.13
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	85.07
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	84.83
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	84.65
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	84.62
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	84.51
3qha_A	296	Putative oxidoreductase; seattle structural genomi	83.99
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	83.91
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	83.86
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	83.83
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	83.82
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	83.66
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	83.65
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	83.65
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	83.58
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	83.4
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	83.36
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	83.31
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	83.25
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	83.15
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	83.11
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	82.99
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	82.79
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	82.64
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	82.64
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	82.62
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	82.51
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	82.45
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	82.35
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	82.34
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	82.29
4g65_A	461	TRK system potassium uptake protein TRKA; structur	82.15
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	82.11
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	81.75
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	81.72
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	81.65
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	81.65
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	81.64
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	81.63
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	81.42
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	81.37
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	81.34
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	81.03
4ezb_A	317	Uncharacterized conserved protein; structural geno	80.97
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	80.92
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	80.85
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	80.84
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	80.72
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	80.61
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	80.55
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	80.36
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	80.31
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	80.24
3tl2_A	315	Malate dehydrogenase; center for structural genomi	80.23
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	80.09

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.96  E-value=2.3e-28  Score=253.99  Aligned_cols=276  Identities=16%  Similarity=0.171  Sum_probs=166.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-cc-ccccHHHHHHHHHcCCCChHh-HHHHHh--hhcCCC-
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QE-WNISRKELLELVESGILVEDD-IDEATA--TKFNPN-  182 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~-~~is~~~l~~L~~lGl~~~~~-~~~~~~--~~~~~~-  182 (535)
                      +|||+||| ||+|+++|+.|+++|++|+||||.+..+.. ++ ..++...++.+   |+..... +...+.  +.+.+. 
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l---~~~~~~~~~~~~~~~~~~~~~~~   80 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEA---DIKADRSFIANEVKGARIYGPSE   80 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHT---TCCCCTTTEEEEESEEEEECTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHc---CCCchhhhhhcccceEEEEeCCC
Confidence            69999999 999999999999999999999997543332 22 23565655554   6532111 000000  111221 


Q ss_pred             cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE--cCC--eEEEcCeEEEccC
Q 009427          183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEG--KILSSHLIIDAMG  258 (535)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~--~~G--~~i~a~lVV~AdG  258 (535)
                      ......... .......+.+++..+.+.|.+.+.+.|++++.+++|+++..+++.++...  .++  .+++||+||+|||
T Consensus        81 ~~~~~~~~~-~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG  159 (397)
T 3oz2_A           81 KRPIILQSE-KAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADG  159 (397)
T ss_dssp             SSCEEEECS-SSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             ceEeecccc-ccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCc
Confidence            000000000 00122345689999999999999999999999999999988887655322  233  4699999999999


Q ss_pred             CChHHHHHhCCCCCC-CCCceeEEEEEecC-CCCCCChHHH------HHHHhhhccCccCC-------C---CCc-cchh
Q 009427          259 NFSPVVKQAFPAGSG-PLDRTTYMFTYIDP-QAGSPKLEEL------LERYWDLMPEYQGV-------T---LDN-LEIQ  319 (535)
Q Consensus       259 ~~S~v~~~~~p~~~~-~~~~~~~~~~y~~~-~~~~~~l~~~------~~~~~~~~P~~~~~-------~---~~~-~~~~  319 (535)
                      .+|.+++++-..... +.......+.+... ....+...++      ..++.|++|...+.       .   ... ....
T Consensus       160 ~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~  239 (397)
T 3oz2_A          160 FESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLGSIAPAGYIWVFPKGEGMANVGIGSSINWIHNRFELK  239 (397)
T ss_dssp             TTCHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCCTTEEEEECSTTSTTEEEEEEEEETTEEEEEEEEETTTSCSHHHHH
T ss_pred             cccHHHHHcCCCcccccceeeeeeEEEEeeccccCcccceeeeeccCCCceEEEeecccceeEEEEeeccchhhhhhhHH
Confidence            999999875221111 01111122222211 1111111110      12445555543321       0   000 0000


Q ss_pred             -------------------cchhccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCC
Q 009427          320 -------------------RVIYGIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD  380 (535)
Q Consensus       320 -------------------r~~~g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~  380 (535)
                                         +...+.+|... ...+...+|++++|||||.++|++|||++.|++++..||+.|.++++.+
T Consensus       240 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~~  318 (397)
T 3oz2_A          240 NYLDRFIENHPGLKKGQDIQLVTGGVSVSK-VKMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESN  318 (397)
T ss_dssp             HHHHHHHHTCHHHHTSEEEEEEEEEEECCC-CCSCCEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCccccccceeeeeeccccccC-cccceeeeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHcC
Confidence                               00112233322 1112335999999999999999999999999999999999999999888


Q ss_pred             CCChhchhhh
Q 009427          381 FVDSYSLSLL  390 (535)
Q Consensus       381 ~~~~~~l~~l  390 (535)
                      +.+...|..|
T Consensus       319 ~~~~~~L~~Y  328 (397)
T 3oz2_A          319 DYSPQMMQKY  328 (397)
T ss_dssp             CCSHHHHHHH
T ss_pred             CccHHHHHHH
Confidence            7776665543

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.92  E-value=2e-24  Score=230.65  Aligned_cols=271  Identities=18%  Similarity=0.221  Sum_probs=163.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC--Cc-ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG--RE-QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~--~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      ++||+||| ||+|+++|+.|+++|++|+||||.....  .. ....++.+.++.   +|+....  ...+...+. +...
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~---lg~~~~~--~~~~~~~~~-~~~~   79 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDK---LGMPYPK--GEELENKIN-GIKL   79 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHH---TTCCCCC--GGGEEEEEE-EEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHH---hcCCCCc--hHHHHhhhc-ceEE
Confidence            58999999 9999999999999999999999986421  11 112244444444   4764311  000000000 0000


Q ss_pred             ccccCc-ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CCe--EEEcCeEEEccC
Q 009427          186 FEGKGE-IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EGK--ILSSHLIIDAMG  258 (535)
Q Consensus       186 ~~~~~~-~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~---~G~--~i~a~lVV~AdG  258 (535)
                      +..... .+......+.+++..+.+.|.+.+.+.|++++.+++|+++..++++++ |++.   +|+  +++||+||+|||
T Consensus        80 ~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG  159 (453)
T 3atr_A           80 YSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATG  159 (453)
T ss_dssp             ECTTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCG
T ss_pred             ECCCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcC
Confidence            000110 011111245688999999999999999999999999999988877754 4443   665  799999999999


Q ss_pred             CChHHHHHhCCCC--CCCCCceeEEEEEec----CCC-CCCChHH-H------HHHHhhhccCccCC---------CCCc
Q 009427          259 NFSPVVKQAFPAG--SGPLDRTTYMFTYID----PQA-GSPKLEE-L------LERYWDLMPEYQGV---------TLDN  315 (535)
Q Consensus       259 ~~S~v~~~~~p~~--~~~~~~~~~~~~y~~----~~~-~~~~l~~-~------~~~~~~~~P~~~~~---------~~~~  315 (535)
                      .+|.++++.....  ..+.....+...|..    ..+ .++.... +      -.+|+|++|...+.         ....
T Consensus       160 ~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~  239 (453)
T 3atr_A          160 YSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGGMGY  239 (453)
T ss_dssp             GGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCTTTTEEEEECCTTTSTTSCEEEEEEETTEEEEEEEEESSSCC
T ss_pred             CchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCccCCCeEEEEECCCCCCCcEEEEEECCCCeEEEEEEecCCCCC
Confidence            9999887642211  011111122333321    111 1111111 1      13567777754321         0000


Q ss_pred             --c--chhcch----------------hccccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427          316 --L--EIQRVI----------------YGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  374 (535)
Q Consensus       316 --~--~~~r~~----------------~g~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~  374 (535)
                        .  .+.+.+                .+.+|...  +.+.+ .+|++++|||||.++|++|||++.|++||..|++.|.
T Consensus       240 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~  317 (453)
T 3atr_A          240 PSIHEYYKKYLDKYAPDVDKSKLLVKGGALVPTRR--PLYTMAWNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAIL  317 (453)
T ss_dssp             CCHHHHHHHHHHHHCTTEEEEEEEEEEEEEEECSS--CCSCSEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhhhcCCCeEEeccceeccCCC--CCCceecCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence              0  000000                02233322  33333 5999999999999999999999999999999999999


Q ss_pred             HHHhCCCCChhchh
Q 009427          375 EAVRGDFVDSYSLS  388 (535)
Q Consensus       375 ~al~~~~~~~~~l~  388 (535)
                      +++..+..+...|.
T Consensus       318 ~~l~~~~~~~~~L~  331 (453)
T 3atr_A          318 SAFETGDFSASGLW  331 (453)
T ss_dssp             HHHHHTCCSTTTTT
T ss_pred             HHHHcCCccHHHHH
Confidence            98875544444443

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.92  E-value=1.2e-23  Score=230.81  Aligned_cols=270  Identities=18%  Similarity=0.205  Sum_probs=161.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC-c---
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPN-R---  183 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~-~---  183 (535)
                      ++|||||| ||+|+++|+.|+++|++|+||||.+... ..+...++...++.|.++|+++  .+   ........ .   
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~--~l---~~~~~~~~~~~~~  123 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLD--RF---LEGTQVAKGLPFA  123 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHH--HH---TTSCCBCSBCCBT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChH--HH---HhcCcccCCceeC
Confidence            69999999 9999999999999999999999986433 2233457778888888888731  11   11111100 0   


Q ss_pred             -c---cccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE--cCC-eEEEcCeEEEc
Q 009427          184 -C---GFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEG-KILSSHLIIDA  256 (535)
Q Consensus       184 -~---~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~--~~G-~~i~a~lVV~A  256 (535)
                       .   .+.. ..........+.+++..+.+.|.+.+.+.|++|+++++|++++.++++++|++  .+| .+++||+||+|
T Consensus       124 ~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~A  202 (570)
T 3fmw_A          124 GIFTQGLDF-GLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGC  202 (570)
T ss_dssp             TBCTTCCBG-GGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEEC
T ss_pred             Ccccccccc-cccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEc
Confidence             0   1100 00001112245688999999999999988999999999999988888888887  567 68999999999


Q ss_pred             cCCChHHHHHh---CCCCCCCCCceeEEEEEecCCCCCC-ChHHHHHHHhhh-ccCccC----C-----------CCCcc
Q 009427          257 MGNFSPVVKQA---FPAGSGPLDRTTYMFTYIDPQAGSP-KLEELLERYWDL-MPEYQG----V-----------TLDNL  316 (535)
Q Consensus       257 dG~~S~v~~~~---~p~~~~~~~~~~~~~~y~~~~~~~~-~l~~~~~~~~~~-~P~~~~----~-----------~~~~~  316 (535)
                      ||.+|.++++.   ++..  +.....+........+..+ .+...-.+++++ +|...+    +           .....
T Consensus       203 DG~~S~vR~~lGi~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~G~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~~  280 (570)
T 3fmw_A          203 DGGRSTVRRLAADRFPGT--EATVRALIGYVTTPEREVPRRWERTPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPV  280 (570)
T ss_dssp             SCSSCHHHHHTTCCCCCC--CCCEEEEEEECCCCSCSSCCCCCCCCSSCEEECCCC------CEEEEEESCC-----CCC
T ss_pred             CCCCchHHHHcCCCCccc--eeeeEEEEEEEEecCCCcceEEEecCCEEEEEEeecCCCeEEEEEEEeCCCCccccccCC
Confidence            99999988874   2221  1111111111111000000 000000011111 222110    0           00000


Q ss_pred             ---chhcc---hhc-------------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHH
Q 009427          317 ---EIQRV---IYG-------------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEA  376 (535)
Q Consensus       317 ---~~~r~---~~g-------------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~a  376 (535)
                         .+.+.   .++             .+|.... ..+.+ .+|++++|||||.++|++|||+|.+++||..|+++|+..
T Consensus       281 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~  359 (570)
T 3fmw_A          281 TLEDLGAAVARVRGTPLTLTEPVSWLSRFGDASR-QAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAAR  359 (570)
T ss_dssp             CHHHHHHHTTSSSSCCCCCCSCCEEEEEECCCCE-ECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcccccceeeeeeEEeecccc-cccccccCCEEEEEecceecCCCcCcCHhHHHHHHHHHHHHHHHH
Confidence               00000   011             0111110 11122 499999999999999999999999999999999999998


Q ss_pred             HhCCCCChhchhh
Q 009427          377 VRGDFVDSYSLSL  389 (535)
Q Consensus       377 l~~~~~~~~~l~~  389 (535)
                      ++. ......|..
T Consensus       360 ~~g-~~~~~lL~~  371 (570)
T 3fmw_A          360 VRG-WGSEELLDT  371 (570)
T ss_dssp             HHS-CCCHHHHHH
T ss_pred             HcC-CCcHHHHHH
Confidence            864 333444443

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.91  E-value=6.6e-24  Score=223.09  Aligned_cols=260  Identities=17%  Similarity=0.143  Sum_probs=159.7

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      .+++||+||| |++|+++|+.|+++|++|+||||...... .+...++...++.|.++|+.  +.+...   ......+.
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~--~~~~~~---~~~~~~~~   95 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMG--DIMETF---GGPLRRMA   95 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCH--HHHHHH---SCCCCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCH--HHHHhh---cCCCcceE
Confidence            3469999999 99999999999999999999999864322 22334667777788777873  222221   11111111


Q ss_pred             ccc-c-Ccc-eee---------eccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeE
Q 009427          186 FEG-K-GEI-WVE---------DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLI  253 (535)
Q Consensus       186 ~~~-~-~~~-~~~---------~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lV  253 (535)
                      +.. . +.. ...         ....+.+++..|.+.|.+.+.+  ++|+++++|++++.++++++|++.+|++++||+|
T Consensus        96 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v  173 (407)
T 3rp8_A           96 YRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLL  173 (407)
T ss_dssp             EEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEE
T ss_pred             EEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEE
Confidence            111 1 110 000         1234568899999999999877  8899999999999999999999989989999999


Q ss_pred             EEccCCChHHHHHhCCCCCCCCCceeEEE--EEecCCCCCCC---hHHHH--HHHhhhccCccCC-------------CC
Q 009427          254 IDAMGNFSPVVKQAFPAGSGPLDRTTYMF--TYIDPQAGSPK---LEELL--ERYWDLMPEYQGV-------------TL  313 (535)
Q Consensus       254 V~AdG~~S~v~~~~~p~~~~~~~~~~~~~--~y~~~~~~~~~---l~~~~--~~~~~~~P~~~~~-------------~~  313 (535)
                      |+|||.+|.++++.++....+ ....+..  .........+.   ...++  +++++++|...+.             ..
T Consensus       174 V~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  252 (407)
T 3rp8_A          174 IAADGSHSALRPWVLGFTPQR-RYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAE  252 (407)
T ss_dssp             EECCCTTCSSHHHHHSSCCCC-EEEEEEEEEEEEECCTTTCCTTEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTCSC
T ss_pred             EECCCcChHHHHHhcCCCCCC-cccCcEEEEEEEecccccCCCCceEEEECCCcEEEEEEcCCCeEEEEEEeCCCcCCCC
Confidence            999999999999875542111 1111111  11111101111   00010  2233444432210             00


Q ss_pred             Cccchh---cchh-cc----------cc--------CCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHH
Q 009427          314 DNLEIQ---RVIY-GI----------FP--------TYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS  370 (535)
Q Consensus       314 ~~~~~~---r~~~-g~----------~P--------~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La  370 (535)
                      +.....   +..+ ++          .+        .+...+.+.+ .+|+++||||||.++|++|||+|.+++||..|+
T Consensus       253 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La  332 (407)
T 3rp8_A          253 DRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLG  332 (407)
T ss_dssp             CTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCEEEEEEECCCCSCCEETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHhcCCChHHHHHHHcCCccceeEEeeEecCCCCceecCCEEEEEcccccCCcchhhhHHHHHHHHHHHH
Confidence            000000   0000 00          00        0001122223 599999999999999999999999999999999


Q ss_pred             HHHHH
Q 009427          371 TGVYE  375 (535)
Q Consensus       371 ~~l~~  375 (535)
                      +.|.+
T Consensus       333 ~~L~~  337 (407)
T 3rp8_A          333 AVFRQ  337 (407)
T ss_dssp             HHHHS
T ss_pred             HHHhc
Confidence            98863

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.91  E-value=8.2e-24  Score=228.65  Aligned_cols=263  Identities=16%  Similarity=0.154  Sum_probs=161.2

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC---c
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPN---R  183 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~---~  183 (535)
                      .++||+||| ||+|+++|+.|+++|++|+||||.+.... .+...++...++.|.++|+.+  ++... . .....   .
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~--~~~~~-~-~~~~~~~~~   86 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILP--AFGPV-E-TSTQGHFGG   86 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGG--GGCSC-C-EESEEEETT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHH--HHHhc-c-ccccceecc
Confidence            479999999 99999999999999999999999854322 233457778888888889743  11110 0 00000   0


Q ss_pred             ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe---EEEcCeEEEccCCC
Q 009427          184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK---ILSSHLIIDAMGNF  260 (535)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~---~i~a~lVV~AdG~~  260 (535)
                      ..+... .........+.+++..+.+.|.+.+.+.|++++.+++|++++.+++++++++.++.   +++||+||+|||.+
T Consensus        87 ~~~~~~-~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~  165 (499)
T 2qa2_A           87 RPVDFG-VLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGR  165 (499)
T ss_dssp             EEEEGG-GSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTT
T ss_pred             eecccc-cCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcc
Confidence            001000 00000112345788999999999999999999999999999988888988887663   79999999999999


Q ss_pred             hHHHHHhCCCCCC-CCCceeEEEEEecCCCCCCC-hHHH--HHHHhhhccCccCC--------C------CCccc---hh
Q 009427          261 SPVVKQAFPAGSG-PLDRTTYMFTYIDPQAGSPK-LEEL--LERYWDLMPEYQGV--------T------LDNLE---IQ  319 (535)
Q Consensus       261 S~v~~~~~p~~~~-~~~~~~~~~~y~~~~~~~~~-l~~~--~~~~~~~~P~~~~~--------~------~~~~~---~~  319 (535)
                      |.+++++-....+ ......+..... . ...+. ....  -.++++++|...+.        .      .....   +.
T Consensus       166 S~VR~~lg~~~~~~~~~~~~~~~~v~-~-~~~~~~~~~~~~~~g~~~~~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (499)
T 2qa2_A          166 STVRKAAGFDFPGTSASREMFLADIR-G-CEITPRPIGETVPLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVA  243 (499)
T ss_dssp             CHHHHHTTCCCCEECCCCCEEEEEEE-S-CCCCCEEEEEEETTEEEEEEECSSSCEEEEEEETTCCCCCCSSSCCHHHHH
T ss_pred             cHHHHHcCCCCCCCCCccEEEEEEEE-E-CCCCcceEEEECCCeEEEEEEcCCCEEEEEEEecCCCCccccCCCCHHHHH
Confidence            9999875111011 011112221111 1 11111 0000  01223333322110        0      00000   00


Q ss_pred             c---chhcc------------ccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhC
Q 009427          320 R---VIYGI------------FPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG  379 (535)
Q Consensus       320 r---~~~g~------------~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~  379 (535)
                      +   ..++.            ++... ...+.+ .+|++++|||||.++|++|||+|++++||..|+++|+..++.
T Consensus       244 ~~l~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g  318 (499)
T 2qa2_A          244 AAWQRLTGQDISHGEPVWVSAFGDPA-RQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSG  318 (499)
T ss_dssp             HHHHHHHSCCCTTCEEEEEEEECCCE-EECSCSEETTEEECGGGTEEECCCSSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCCccceeEEEEEeCCc-EEcccccCCCEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcC
Confidence            0   01110            11100 001122 489999999999999999999999999999999999998853

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.91  E-value=1.3e-23  Score=227.06  Aligned_cols=265  Identities=17%  Similarity=0.135  Sum_probs=160.9

Q ss_pred             CCCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC--
Q 009427          107 AVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPN--  182 (535)
Q Consensus       107 ~~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~--  182 (535)
                      .+.++||+||| ||+|+++|+.|+++|++|+||||.+... ..+...++...++.|.++|+.+  ++...  ..+...  
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~--~~~~~--~~~~~~~~   83 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILP--RFGEV--ETSTQGHF   83 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGG--GGCSC--CBCCEEEE
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHH--HHHhc--cccccccc
Confidence            34479999999 9999999999999999999999986432 2233457778888888888743  11110  000000  


Q ss_pred             -cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe---EEEcCeEEEccC
Q 009427          183 -RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK---ILSSHLIIDAMG  258 (535)
Q Consensus       183 -~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~---~i~a~lVV~AdG  258 (535)
                       ...+... .........+.+++..+.+.|.+.+.+.|++++.+++|++++.+++++++++.++.   +++||+||+|||
T Consensus        84 ~~~~~~~~-~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG  162 (500)
T 2qa1_A           84 GGLPIDFG-VLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDG  162 (500)
T ss_dssp             TTEEEEGG-GSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCC
T ss_pred             cceecccc-cCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCC
Confidence             0001000 00000112345778899999999999999999999999999999999988887653   799999999999


Q ss_pred             CChHHHHHhCCCCCC-CCCceeEEEEEecCCCCCCC-hHHH--HHHHhhhccCccCC--------C------CCccc---
Q 009427          259 NFSPVVKQAFPAGSG-PLDRTTYMFTYIDPQAGSPK-LEEL--LERYWDLMPEYQGV--------T------LDNLE---  317 (535)
Q Consensus       259 ~~S~v~~~~~p~~~~-~~~~~~~~~~y~~~~~~~~~-l~~~--~~~~~~~~P~~~~~--------~------~~~~~---  317 (535)
                      .+|.+++++-....+ ......+..... . ...+. ....  -.++++++|...+.        .      .....   
T Consensus       163 ~~S~VR~~lg~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~  240 (500)
T 2qa1_A          163 GRSSVRKAAGFDFPGTAATMEMYLADIK-G-VELQPRMIGETLPGGMVMVGPLPGGITRIIVCERGTPPQRRETPPSWHE  240 (500)
T ss_dssp             TTCHHHHHTTCCCCEECCCCEEEEEEEE-S-CCCCCEEEEEEETTEEEEEEEETTTEEEEEEEETTCCC-----CCCHHH
T ss_pred             cchHHHHHcCCCcCCCccceEEEEEEEE-e-CCCCCceEEEECCCcEEEEEEcCCCEEEEEEEcCCCCCccccCCCCHHH
Confidence            999999875111011 011111211111 1 11111 0000  01222233321110        0      00000   


Q ss_pred             hhc---chhcc------------ccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhC
Q 009427          318 IQR---VIYGI------------FPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG  379 (535)
Q Consensus       318 ~~r---~~~g~------------~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~  379 (535)
                      +.+   ..++.            ++... ...+.+ .+|++++|||||.++|++|||+|++++||..|+++|+..++.
T Consensus       241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~~~g  317 (500)
T 2qa1_A          241 VADAWKRLTGDDIAHAEPVWVSAFGNAT-RQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNG  317 (500)
T ss_dssp             HHHHHHHHHSCCCTTSEEEEEEEEECCE-EECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCCCccceeEEEEeccCc-EEccccccCCEEEEEccccCCCCccccchhhhHHHHHHHHHHHHHHHcC
Confidence            000   01110            11000 001122 489999999999999999999999999999999999988853

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.90  E-value=1.5e-22  Score=220.58  Aligned_cols=265  Identities=19%  Similarity=0.103  Sum_probs=159.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC-cc--
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPN-RC--  184 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~-~~--  184 (535)
                      ++||+||| ||+|+++|+.|+++|++|+||||..... ..+...++...++.|.++|+.  +++... ...+... .+  
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~--~~~~~~-~~~~~~~~~~~~   81 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVA--DEVVRA-DDIRGTQGDFVI   81 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCH--HHHHHS-CCSSCTTSCCEE
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCH--HHHHhh-CCCcccccceee
Confidence            69999999 9999999999999999999999986432 233445777888888888872  222211 0000000 00  


Q ss_pred             -ccc-ccCc-ce---------------eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEEE
Q 009427          185 -GFE-GKGE-IW---------------VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLL  242 (535)
Q Consensus       185 -~~~-~~~~-~~---------------~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~----gv~v~~  242 (535)
                       .+. ..+. ..               ......+.+++..+.+.|.+++.+.|++++++++|++++.+++    ++++++
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~  161 (535)
T 3ihg_A           82 RLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARL  161 (535)
T ss_dssp             EEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEE
T ss_pred             eEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEE
Confidence             000 0000 00               0011134578999999999999999999999999999999888    888888


Q ss_pred             cCC---eEEEcCeEEEccCCChHHHHHh-CCCCCCCCCcee-EEEEEecCCC----CCCChHHHH---HHHhhhccCccC
Q 009427          243 AEG---KILSSHLIIDAMGNFSPVVKQA-FPAGSGPLDRTT-YMFTYIDPQA----GSPKLEELL---ERYWDLMPEYQG  310 (535)
Q Consensus       243 ~~G---~~i~a~lVV~AdG~~S~v~~~~-~p~~~~~~~~~~-~~~~y~~~~~----~~~~l~~~~---~~~~~~~P~~~~  310 (535)
                      .++   .+++||+||+|||.+|.+++++ ++. .++..... +.+.+....+    .++....++   +....++|....
T Consensus       162 ~~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~  240 (535)
T 3ihg_A          162 AGPDGEYDLRAGYLVGADGNRSLVRESLGIGR-YGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLHHPEFKGTFGPTDRP  240 (535)
T ss_dssp             EETTEEEEEEEEEEEECCCTTCHHHHHTTCCE-EEEEEEEEEEEEEEECCGGGTSCTTCCEEEEEECSSCEEEEEECSST
T ss_pred             EcCCCeEEEEeCEEEECCCCcchHHHHcCCCc-CCCCccceEEEEEEeccChhhccCCceEEEEEECCCceEEEEEecCC
Confidence            765   6899999999999999998874 332 11000000 1111111000    000000000   001111121110


Q ss_pred             --------------CCCCccc---hhc---chhcc------------ccCCCCCCCCcc-CCCeeEeecCCCcccccccc
Q 009427          311 --------------VTLDNLE---IQR---VIYGI------------FPTYRDSPLPAA-FNRILQFGDASGIQSPVSFG  357 (535)
Q Consensus       311 --------------~~~~~~~---~~r---~~~g~------------~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~  357 (535)
                                    .....+.   +.+   ..++.            ++... ...+.+ .+|++++|||||.++|++||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~grv~LvGDAAH~~~P~~Gq  319 (535)
T 3ihg_A          241 DRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKPELVDIQGWEMAA-RIAERWREGRVFLAGDAAKVTPPTGGM  319 (535)
T ss_dssp             TEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTCSSCCCEEEEEEEEEEEE-EEESCSEETTEEECTTTTEECCSTTSC
T ss_pred             CEEEEEEeeCccccCccccCCHHHHHHHHHHHhCCCCCceeEEEeeEeeeeE-EEECccccCCEEEEecccccCCCccCC
Confidence                          0000110   000   01110            01000 001122 49999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHhC
Q 009427          358 GFGSLTRHLGRLSTGVYEAVRG  379 (535)
Q Consensus       358 Gi~~al~da~~La~~l~~al~~  379 (535)
                      |+|++++||..|+++|+..++.
T Consensus       320 G~n~ai~DA~~La~~La~~l~g  341 (535)
T 3ihg_A          320 SGNAAVADGFDLAWKLAAVLQG  341 (535)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccHHHHHHHHHHHhcC
Confidence            9999999999999999998854

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.90  E-value=2.6e-23  Score=217.28  Aligned_cols=155  Identities=23%  Similarity=0.254  Sum_probs=102.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc-ccc--cccHHHHHHHHHcCCCChHhHHHHHh-hhcCCCccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE-QEW--NISRKELLELVESGILVEDDIDEATA-TKFNPNRCG  185 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~-~~~--~is~~~l~~L~~lGl~~~~~~~~~~~-~~~~~~~~~  185 (535)
                      .+|+||| ||+|+++|+.|+++|++|+|+||.+..... +..  .++...++.|.++|+.  +.+..... ..+......
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~--~~~~~~~~~~~~~~~~~~   79 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPA--ENWLAFEEASRYIGGQSR   79 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCH--HHHHHHHHHCEEECCCCE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCCh--HHHHHhhhhhcccCccee
Confidence            4799999 999999999999999999999998643321 112  2456667777777862  22221111 111000000


Q ss_pred             ccc--------cC---c--ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCeEEEcC
Q 009427          186 FEG--------KG---E--IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSH  251 (535)
Q Consensus       186 ~~~--------~~---~--~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G~~i~a~  251 (535)
                      +..        ..   .  ........+.+++..|.+.|.+.+   +..|+++++|++++..++ +++|+++||++++||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~---~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~ad  156 (412)
T 4hb9_A           80 FYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGL---ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVD  156 (412)
T ss_dssp             EECTTSCEEEC--------------CEEEEEHHHHHHHHHTTC---TTTEECSCCEEEEEECTTSCEEEEETTSCEEEES
T ss_pred             EecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhc---cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEee
Confidence            000        00   0  000011123467777877776543   456889999999987655 588999999999999


Q ss_pred             eEEEccCCChHHHHHhCCC
Q 009427          252 LIIDAMGNFSPVVKQAFPA  270 (535)
Q Consensus       252 lVV~AdG~~S~v~~~~~p~  270 (535)
                      +||+|||.+|.+++++++.
T Consensus       157 lvVgADG~~S~vR~~l~~~  175 (412)
T 4hb9_A          157 VLVGADGSNSKVRKQYLPF  175 (412)
T ss_dssp             EEEECCCTTCHHHHHHSTT
T ss_pred             EEEECCCCCcchHHHhCCC
Confidence            9999999999999998765

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.90  E-value=7.2e-23  Score=215.59  Aligned_cols=266  Identities=17%  Similarity=0.157  Sum_probs=159.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC-ccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN-RCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~-~~~~~  187 (535)
                      ++||+||| |++|+++|+.|+++|++|+||||...+.......+....++.+.++|+.  +.+...   .+... ...+.
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~--~~~~~~---~~~~~~~~~~~   79 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFL--DAVKAQ---GFQQKFGAKFV   79 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCH--HHHHHT---TCEEECEEEEE
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCCh--HHHHHc---CCcccCCcEEE
Confidence            59999999 9999999999999999999999986544222223444445555556762  222211   11100 01110


Q ss_pred             ccC---------cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE--EEcCCe--EEEcCeEE
Q 009427          188 GKG---------EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL--LLAEGK--ILSSHLII  254 (535)
Q Consensus       188 ~~~---------~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v--~~~~G~--~i~a~lVV  254 (535)
                      ...         .........+.+++..+.+.|.+.+.+.|++++++++|++++.+++++++  .+.+|+  +++||+||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV  159 (421)
T 3nix_A           80 RGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFII  159 (421)
T ss_dssp             ETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEE
T ss_pred             eCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEE
Confidence            000         00000122356899999999999999999999999999999988777544  446776  69999999


Q ss_pred             EccCCChHHHHHhCCCCCCCCCceeEEEE-EecCCCCCCChH------H----HHHHHhhhccCccCC-------C---C
Q 009427          255 DAMGNFSPVVKQAFPAGSGPLDRTTYMFT-YIDPQAGSPKLE------E----LLERYWDLMPEYQGV-------T---L  313 (535)
Q Consensus       255 ~AdG~~S~v~~~~~p~~~~~~~~~~~~~~-y~~~~~~~~~l~------~----~~~~~~~~~P~~~~~-------~---~  313 (535)
                      +|||.+|.+++..-.............+. +..... .+...      .    .-.+|+|.+|...+.       .   .
T Consensus       160 ~A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~  238 (421)
T 3nix_A          160 DASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKR-PVAAEMEGNRITAVVHKPKVWIWVIPFSNGNTSVGFVGEPSYF  238 (421)
T ss_dssp             ECCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTC-CC----CCSEEEEEEEETTEEEEEEECTTSEEEEEEEECHHHH
T ss_pred             ECCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcC-CCccCCCCeEEEEEeCCCCEEEEEEEECCCCEEEEEEecHHHh
Confidence            99999998876631110000011112222 221111 11000      0    012455666654321       0   0


Q ss_pred             C----cc-chhcchh-------------------ccccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHH
Q 009427          314 D----NL-EIQRVIY-------------------GIFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRL  369 (535)
Q Consensus       314 ~----~~-~~~r~~~-------------------g~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~L  369 (535)
                      +    .. ...+...                   ..++.+.....+...+|+++||||||.++|++|+|++.++.++..|
T Consensus       239 ~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~l  318 (421)
T 3nix_A          239 DEYTGTPEERMRAMIANEGHIAERFKSEEFLFEPRTIEGYAISASKLYGDGFVLTGNATEFLDPIFSSGATFAMESGSKG  318 (421)
T ss_dssp             TTSCSCHHHHHHHHHHTCTTTHHHHTTCCBSSCCEEEECCCBEESCSEETTEEECGGGTCBCCSTTCCHHHHHHHHHHHH
T ss_pred             hhcCCCHHHHHHHHHHhCcHHHHHHhcCccccCceeecccceeeeeeccCCEEEecccccccCCcccccHHHHHHHHHHH
Confidence            0    00 0000000                   0011111001112259999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 009427          370 STGVYEAVRGDF  381 (535)
Q Consensus       370 a~~l~~al~~~~  381 (535)
                      ++.|.+++..+.
T Consensus       319 a~~l~~~~~~~~  330 (421)
T 3nix_A          319 GKLAVQFLKGEE  330 (421)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHhcCCc
Confidence            999999886543

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.90  E-value=6.5e-23  Score=214.33  Aligned_cols=265  Identities=14%  Similarity=0.120  Sum_probs=155.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC---CCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~---~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      ++||+||| ||+|+++|+.|++.|++|+|+||....   ...+...++...++.|.++|+.+  .+... .....  ...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~--~~~~~-~~~~~--~~~   76 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR--RMARD-GLVHE--GVE   76 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCH--HHHHH-CEEES--CEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcH--HHHhc-CCccc--eEE
Confidence            48999999 999999999999999999999998531   11223346677777787889742  22221 11111  111


Q ss_pred             ccccCcceee-------eccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEEEEE-cCCe--EEEcCeEE
Q 009427          186 FEGKGEIWVE-------DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLL-AEGK--ILSSHLII  254 (535)
Q Consensus       186 ~~~~~~~~~~-------~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~gv~v~~-~~G~--~i~a~lVV  254 (535)
                      +...+.....       ....+.+++..+.+.|.+.+.+.|++++.+++|++++.++ +++.|++ .+|+  +++||+||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV  156 (394)
T 1k0i_A           77 IAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIA  156 (394)
T ss_dssp             EEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEE
T ss_pred             EEECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEE
Confidence            1101100000       1112345778888999999988899999999999997653 4577776 6786  79999999


Q ss_pred             EccCCChHHHHHhCCCCCCCCCceeEEEEEec----CCCCCCChHH-HH-HHHhhhccCccC---C--------CCCcc-
Q 009427          255 DAMGNFSPVVKQAFPAGSGPLDRTTYMFTYID----PQAGSPKLEE-LL-ERYWDLMPEYQG---V--------TLDNL-  316 (535)
Q Consensus       255 ~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~----~~~~~~~l~~-~~-~~~~~~~P~~~~---~--------~~~~~-  316 (535)
                      +|||.+|.++++.... ..+.....+.+.+..    ..+..+.... .. .++.++.|...+   .        ..... 
T Consensus       157 ~AdG~~S~vr~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (394)
T 1k0i_A          157 GCDGFHGISRQSIPAE-RLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSQYYVQVPLSEKVEDWS  235 (394)
T ss_dssp             ECCCTTCSTGGGSCGG-GCEEEEEEEEEEEEEEEESSCCSCSSCEEECCTTCCEEEEEEETTEEEEEEEECTTCCGGGCC
T ss_pred             ECCCCCcHHHHhcCcc-ccccccccccceeEEEecCCCCCccceEEEEcCCceEEEEecCCCcEEEEEEeCCCCCccccC
Confidence            9999999988774221 100001111122211    1111111000 00 112222221110   0        00000 


Q ss_pred             --chh---cchh-c---------------cccCCCCCCCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427          317 --EIQ---RVIY-G---------------IFPTYRDSPLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE  375 (535)
Q Consensus       317 --~~~---r~~~-g---------------~~P~~~~~pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~  375 (535)
                        ...   +..+ +               .+|.......+...+|++++|||||.++|++|||+|.+++||..|++.|.+
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~  315 (394)
T 1k0i_A          236 DERFWTELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLK  315 (394)
T ss_dssp             HHHHHHHHHHTSCHHHHHHCCCCCEEEEEEEEEEEEEEECSEETTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCcccccccccCcceeeEEEEhhhhhccccccCCEEEEechhhcCCCcccchHHHHHHHHHHHHHHHHH
Confidence              000   0000 0               011100000011258999999999999999999999999999999999988


Q ss_pred             HHhCC
Q 009427          376 AVRGD  380 (535)
Q Consensus       376 al~~~  380 (535)
                      ++..+
T Consensus       316 ~~~~~  320 (394)
T 1k0i_A          316 AYREG  320 (394)
T ss_dssp             HHHHC
T ss_pred             HhccC
Confidence            77543

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.89  E-value=4.6e-23  Score=215.94  Aligned_cols=262  Identities=15%  Similarity=0.076  Sum_probs=157.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      ++||+||| |++|+++|+.|+++|++|+||||.+... ......++....+.+.++|+.  +.+... ...+.  ...+.
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~--~~~~~~-~~~~~--~~~~~   80 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLL--AEVTRR-GGRVR--HELEV   80 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCH--HHHHHT-TCEEE--CEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcH--HHHHHh-CCCcc--eeEEE
Confidence            58999999 9999999999999999999999985431 122233566667777777862  222211 11010  11110


Q ss_pred             c-cCc-cee-------eeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeE--EEEEcCCeEEEcCeEEE
Q 009427          188 G-KGE-IWV-------EDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIID  255 (535)
Q Consensus       188 ~-~~~-~~~-------~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv--~v~~~~G~~i~a~lVV~  255 (535)
                      . .+. ...       .....+.+++..+.+.|.+.+.+. |++++.+++|++++.+++++  .|++++|++++||+||+
T Consensus        81 ~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~  160 (399)
T 2x3n_A           81 YHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVG  160 (399)
T ss_dssp             EETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEE
T ss_pred             eCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEE
Confidence            0 010 000       011235588999999999999988 89999999999998888888  88888888899999999


Q ss_pred             ccCCChHHHHHhCCCCCCCC--Ccee--EEEE--EecCCCCCCChHHHH---HHHhhhccCccC----------------
Q 009427          256 AMGNFSPVVKQAFPAGSGPL--DRTT--YMFT--YIDPQAGSPKLEELL---ERYWDLMPEYQG----------------  310 (535)
Q Consensus       256 AdG~~S~v~~~~~p~~~~~~--~~~~--~~~~--y~~~~~~~~~l~~~~---~~~~~~~P~~~~----------------  310 (535)
                      |||.+|.+++..-..... .  ....  ..+.  +....+..  . ..+   +++++++|....                
T Consensus       161 AdG~~s~vr~~lg~~~~~-~~p~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  236 (399)
T 2x3n_A          161 ADGIASYVRRRLLDIDVE-RRPYPSPMLVGTFALAPCVAERN--R-LYVDSQGGLAYFYPIGFDRARLVVSFPREEAREL  236 (399)
T ss_dssp             CCCTTCHHHHHTSCCCCC-CCCCSSCEEEEEEECCHHHHHCE--E-EEECTTSCEEEEEEETTTEEEEEEECCHHHHHHH
T ss_pred             CCCCChHHHHHhCCCccc-cCCCCCCceEEEEEEecCCCCCc--c-EEEcCCCcEEEEEEcCCCEEEEEEEeCccccccc
Confidence            999999988864222111 1  1111  1111  10000000  0 000   011111110000                


Q ss_pred             ---CC-----------CCcc--chhcc----hhccccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHH
Q 009427          311 ---VT-----------LDNL--EIQRV----IYGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRL  369 (535)
Q Consensus       311 ---~~-----------~~~~--~~~r~----~~g~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~L  369 (535)
                         ..           .+.+  ...+.    ....+|.....+.+.+ .+|++++|||||.++|++|||+|.+++||..|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~al~da~~L  316 (399)
T 2x3n_A          237 MADTRGESLRRRLQRFVGDESAEAIAAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAIEDASAL  316 (399)
T ss_dssp             HHSTTSHHHHHHHHTTCCGGGHHHHHTCCCSTTCEECCCCCEECSCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHhhcCCcchhhHHhcCCccceEEechhhcccccccccCcEEEEechhccCCCcccccHHHHHHHHHHH
Confidence               00           0000  00000    0011222211112222 49999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 009427          370 STGVYEAVRGD  380 (535)
Q Consensus       370 a~~l~~al~~~  380 (535)
                      ++.|.+.++.+
T Consensus       317 a~~L~~~~~~~  327 (399)
T 2x3n_A          317 ADALDLALRDA  327 (399)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHhhhccc
Confidence            99999887643

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.89  E-value=6.3e-23  Score=222.45  Aligned_cols=265  Identities=18%  Similarity=0.214  Sum_probs=157.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHH-HHHHcCCCChHhHHHHHhhhcCCC---cc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELL-ELVESGILVEDDIDEATATKFNPN---RC  184 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~-~L~~lGl~~~~~~~~~~~~~~~~~---~~  184 (535)
                      ++|||||| |++|+++|+.|+++|++|+||||...+.......+...... .+..+|+.  +.+..   ..+...   ..
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~--~~~~~---~~~~~~~~~~~   81 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLT--DEMKR---AGFPIKRGGTF   81 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCH--HHHHT---TTCCEECEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcH--HHHHH---cCCccccCceE
Confidence            59999999 99999999999999999999999975433222223333332 34445762  11111   111100   00


Q ss_pred             cccccCcc---------eeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE---EEEEcCC--eEEEc
Q 009427          185 GFEGKGEI---------WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA---VLLLAEG--KILSS  250 (535)
Q Consensus       185 ~~~~~~~~---------~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv---~v~~~~G--~~i~a  250 (535)
                      .+......         .......+.+++..+.+.|.+.+.+.|++++++++|+++..+++.+   ++...+|  .+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~a  161 (512)
T 3e1t_A           82 RWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHA  161 (512)
T ss_dssp             ECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEE
T ss_pred             EecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEc
Confidence            01000000         0011224568899999999999999999999999999999887754   4444567  37999


Q ss_pred             CeEEEccCCChHHHHHhCCCCCC-CCCceeEEEEEecC-C-CCCCC----hHH-HHHHHhhhccCccCC----------C
Q 009427          251 HLIIDAMGNFSPVVKQAFPAGSG-PLDRTTYMFTYIDP-Q-AGSPK----LEE-LLERYWDLMPEYQGV----------T  312 (535)
Q Consensus       251 ~lVV~AdG~~S~v~~~~~p~~~~-~~~~~~~~~~y~~~-~-~~~~~----l~~-~~~~~~~~~P~~~~~----------~  312 (535)
                      |+||+|||.+|.++++. +.... ..........+... . ...+.    ... .-.+++|++|...+.          .
T Consensus       162 d~VI~AdG~~S~vr~~l-g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Pl~~~~~~vg~~~~~~~  240 (512)
T 3e1t_A          162 RFIVDASGNRTRVSQAV-GERVYSRFFQNVALYGYFENGKRLPAPRQGNILSAAFQDGWFWYIPLSDTLTSVGAVVSREA  240 (512)
T ss_dssp             EEEEECCCTTCSSGGGT-CCEEECSTTCEEEEEEEEESCCCCSTTCTTSEEEEEETTEEEEEEECSSSEEEEEEEEEHHH
T ss_pred             CEEEECCCcchHHHHHc-CCCccCchhcceEEEEEecCCccCCCCCcCceEEEEeCCceEEEEEeCCCeEEEEEEecHHH
Confidence            99999999999998875 22110 01111112222211 0 01110    000 113456666755421          0


Q ss_pred             CCc----c-c-hhcc------hh--------------ccccCCCC--CCCCc-cCCCeeEeecCCCcccccccccchHHH
Q 009427          313 LDN----L-E-IQRV------IY--------------GIFPTYRD--SPLPA-AFNRILQFGDASGIQSPVSFGGFGSLT  363 (535)
Q Consensus       313 ~~~----~-~-~~r~------~~--------------g~~P~~~~--~pl~~-~~~rvlliGDAA~~~~P~~G~Gi~~al  363 (535)
                      .+.    . . +.+.      +.              +.++....  .+.+. +.+|+++||||||.++|++|||++.++
T Consensus       241 ~~~~~~~~~~~~~~~l~~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~vvlvGDAAh~~~P~~GqG~~~Al  320 (512)
T 3e1t_A          241 AEAIKDGHEAALLRYIDRCPIIKEYLAPATRVTTGDYGEIRIRKDYSYCNTSFWKNGMALVGDAACFVDPVFSSGVHLAT  320 (512)
T ss_dssp             HTTTSSCHHHHHHHHHHTSHHHHHHHTTCEECCSSTTSSCEEEESCCEEESCSBCSSEEECGGGTEECCSTTCCHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHhCchHHHHHhcCccccccccccceeeccccccccccccCCEEEEechhhcCCCccccCHHHHH
Confidence            000    0 0 0000      00              00110000  01122 258999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 009427          364 RHLGRLSTGVYEAVRGD  380 (535)
Q Consensus       364 ~da~~La~~l~~al~~~  380 (535)
                      +|+..|++.|.+.+..+
T Consensus       321 ~dA~~La~~L~~~l~~~  337 (512)
T 3e1t_A          321 YSALLVARAINTCLAGE  337 (512)
T ss_dssp             HHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999887543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.88  E-value=2.1e-22  Score=221.39  Aligned_cols=269  Identities=15%  Similarity=0.136  Sum_probs=162.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhh-------hcCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATAT-------KFNP  181 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~-------~~~~  181 (535)
                      ++|||||| |++|+++|+.|+++|++|+|||+...+.......+.....+.+..+|+.  +.+...-..       .+..
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~--~~l~~~~~~~~~~~~~~~~~  100 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQ--EKIDAQNYVKKPSATFLWGQ  100 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCH--HHHHHHCCEEECEEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCc--HHHHhcCCcccCCcEEEecC
Confidence            58999999 9999999999999999999999997654433334566666777777873  222221100       0000


Q ss_pred             C----cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeEEEEEc-CC--eEEEcCeE
Q 009427          182 N----RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAAVLLLA-EG--KILSSHLI  253 (535)
Q Consensus       182 ~----~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~-~~gv~v~~~-~G--~~i~a~lV  253 (535)
                      .    ...+.............+.+++..+.+.|.+.+.+.|++++++++|+++..+ ++.+.|.+. +|  .+++||+|
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlV  180 (591)
T 3i3l_A          101 DQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFV  180 (591)
T ss_dssp             SCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEE
T ss_pred             CCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEE
Confidence            0    0000000000000112456899999999999999999999999999999765 445667776 66  57999999


Q ss_pred             EEccCCChHHHHHhCCCCCCCCCceeEEEEE-ecCCCC-CC---Ch-HH-HHHHHhhhccCccCC-------CCCccc--
Q 009427          254 IDAMGNFSPVVKQAFPAGSGPLDRTTYMFTY-IDPQAG-SP---KL-EE-LLERYWDLMPEYQGV-------TLDNLE--  317 (535)
Q Consensus       254 V~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y-~~~~~~-~~---~l-~~-~~~~~~~~~P~~~~~-------~~~~~~--  317 (535)
                      |+|||.+|.++++.-.............+.+ ...... .+   .. .. .-.+++|.+|...+.       ..+...  
T Consensus       181 V~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~~~G~~w~iPl~~~~~sv~~~~~~~~~~~l  260 (591)
T 3i3l_A          181 IDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSITFEDGWVWMIPIKDDLYSVGLVVDRSKSAEV  260 (591)
T ss_dssp             EECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTTCEEEEEETTEEEEEEECSSSEEEEEEEEEGGGHHHH
T ss_pred             EECCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCCceEEEEcCCcEEEEEECCCCeEEEEEEcCHHHHhhh
Confidence            9999999999887422100000000111122 111110 11   00 00 113556777754321       000000  


Q ss_pred             -------hhcchh-----------cc--------ccCCCCCCCCc-cCCCeeEeecCCCcccccccccchHHHHHHHHHH
Q 009427          318 -------IQRVIY-----------GI--------FPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLS  370 (535)
Q Consensus       318 -------~~r~~~-----------g~--------~P~~~~~pl~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La  370 (535)
                             +.+...           +.        ++.+. ...+. ..+|+++||||||.++|++|||++.+++|+..|+
T Consensus       261 ~~~~~~~~~~~l~~~~p~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~rvvLIGDAAh~~~Pl~GqGinlAl~dA~~LA  339 (591)
T 3i3l_A          261 REQGADAFYSSTLAKCAKAMDILGGAEQVDEVRIVQDWS-YDTEVFSADRFFLCGDAACFTDPLFSQGVHLASQSAVSAA  339 (591)
T ss_dssp             HHHCHHHHHHHHHTTCHHHHHHHTTCEECSCCEEEEEEE-EEESCSEETTEEECGGGTCBCCGGGCCHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCHHHHHHHhcCccccCceEecccc-cchhhcccCCEEEEccccccCCCcccccHHHHHHHHHHHH
Confidence                   000000           00        00000 00122 2599999999999999999999999999999999


Q ss_pred             HHHHHHHhCCC
Q 009427          371 TGVYEAVRGDF  381 (535)
Q Consensus       371 ~~l~~al~~~~  381 (535)
                      +.|.+++..+.
T Consensus       340 ~~L~~~l~~~~  350 (591)
T 3i3l_A          340 AAIDRITRHGD  350 (591)
T ss_dssp             HHHHHHHHCGG
T ss_pred             HHHHHHHhCCc
Confidence            99999887543

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.87  E-value=2.1e-21  Score=216.62  Aligned_cols=263  Identities=17%  Similarity=0.219  Sum_probs=157.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHH-----CCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSF-----KGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPN  182 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr-----~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~  182 (535)
                      ++||+||| ||+|+++|+.|++     .|++|+||||.+... ..+...++...++.|.++|+.  +++.   .......
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~--~~l~---~~~~~~~   82 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLA--DKIL---SEANDMS   82 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCH--HHHH---TTCBCCC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCH--HHHH---Hhccccc
Confidence            58999999 9999999999999     999999999985322 223345778888888888973  2221   1111111


Q ss_pred             cccccc-c--Ccce-----------eeeccccccCHHHHHHHHHHHHHhCC---CEEEeCceEEEEEEeC--------Ce
Q 009427          183 RCGFEG-K--GEIW-----------VEDILNLGVSPAKLIEIVKKRFISLG---GVIFEGYSVSSICTYE--------NA  237 (535)
Q Consensus       183 ~~~~~~-~--~~~~-----------~~~~~~~~v~~~~l~~~L~~~a~~~G---~~i~~~~~V~~i~~~~--------~g  237 (535)
                      .+.+.. .  +...           ........+++..+.+.|.+.+.+.|   +++..+++|++++.++        ++
T Consensus        83 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~  162 (665)
T 1pn0_A           83 TIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYP  162 (665)
T ss_dssp             EEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCC
T ss_pred             eEEEEeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCC
Confidence            111110 0  0000           00111244788999999999998877   8999999999998765        35


Q ss_pred             EEEEEc------------------------------------------CC--eEEEcCeEEEccCCChHHHHHhCCCCCC
Q 009427          238 AVLLLA------------------------------------------EG--KILSSHLIIDAMGNFSPVVKQAFPAGSG  273 (535)
Q Consensus       238 v~v~~~------------------------------------------~G--~~i~a~lVV~AdG~~S~v~~~~~p~~~~  273 (535)
                      +++++.                                          +|  ++++||+||+|||++|.+|+++-....+
T Consensus       163 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g  242 (665)
T 1pn0_A          163 VTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIG  242 (665)
T ss_dssp             EEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEE
T ss_pred             EEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCC
Confidence            776553                                          35  5799999999999999999985221111


Q ss_pred             CCCceeEEEEEecCC--CCCCChHH---H---HHHHhhhccCccCC---------C--------CCccc---hhc---ch
Q 009427          274 PLDRTTYMFTYIDPQ--AGSPKLEE---L---LERYWDLMPEYQGV---------T--------LDNLE---IQR---VI  322 (535)
Q Consensus       274 ~~~~~~~~~~y~~~~--~~~~~l~~---~---~~~~~~~~P~~~~~---------~--------~~~~~---~~r---~~  322 (535)
                        ....+.+.+.+..  ...+....   +   -.++++++|...+.         .        .....   +.+   ..
T Consensus       243 --~~~~~~~~v~d~~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~~~~r~~~~~~~~~~~~~~~~~~~~t~e~~~~~~~~~  320 (665)
T 1pn0_A          243 --EQTDYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQARAEKGGRVDRTKFTPEVVIANAKKI  320 (665)
T ss_dssp             --EEEEEEEEEEEEEEECCCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEECC----------CCCCHHHHHHHHHHH
T ss_pred             --CCccEEEEEEEEEECCCCCCcceEEEEEeCCCceEEEEEcCCCEEEEEEEeCCccccccccCcCCCCHHHHHHHHHHH
Confidence              0111111121110  01111100   0   01222333332110         0        00000   000   01


Q ss_pred             hcc----------ccCCC--CCCCCcc--CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhC
Q 009427          323 YGI----------FPTYR--DSPLPAA--FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG  379 (535)
Q Consensus       323 ~g~----------~P~~~--~~pl~~~--~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~  379 (535)
                      ++.          ...+.  ....+.+  .+||+|+|||||.++|+.|||+|++|+||..|+++|+..++.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~r~a~~~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~g  391 (665)
T 1pn0_A          321 FHPYTFDVQQLDWFTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTG  391 (665)
T ss_dssp             HTTSCCEEEEEEEEEEEEEEEEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hCcccCceeeEEEEEeeeccceehhhcccCCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHHcC
Confidence            110          00000  0011222  489999999999999999999999999999999999998863

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.87  E-value=3.2e-21  Score=210.80  Aligned_cols=263  Identities=14%  Similarity=0.138  Sum_probs=155.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCC--Cccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNP--NRCG  185 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~--~~~~  185 (535)
                      ++||+||| ||+|+++|+.|+++|++|+||||..... ..+...+....++.|.++|+.  +.+.... .....  ....
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~--~~~~~~~-~~~~~~~~~~~  102 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVA--KQIRTAG-WPGDHPLDAAW  102 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCH--HHHHTSS-CCTTSBCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCCh--HHHHhhc-CCcccccceEE
Confidence            58999999 9999999999999999999999985432 223345677788888888872  2221110 00000  0000


Q ss_pred             ccc-cCc-ce--------------eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---C-
Q 009427          186 FEG-KGE-IW--------------VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G-  245 (535)
Q Consensus       186 ~~~-~~~-~~--------------~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~---G-  245 (535)
                      +.. .+. ..              ......+.+++..+.+.|.+.+.+.   ++++++|++++.+++++++++.+   | 
T Consensus       103 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~  179 (549)
T 2r0c_A          103 VTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGA  179 (549)
T ss_dssp             ESSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCC
T ss_pred             eccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCC
Confidence            000 000 00              0011224578888999999998876   89999999999888888887755   6 


Q ss_pred             -eEEEcCeEEEccCCChHHHHHh-CCCCCCCCCceeEE-EEEecC-C----CCCCChHHHH---H-HHhhhccCccC--C
Q 009427          246 -KILSSHLIIDAMGNFSPVVKQA-FPAGSGPLDRTTYM-FTYIDP-Q----AGSPKLEELL---E-RYWDLMPEYQG--V  311 (535)
Q Consensus       246 -~~i~a~lVV~AdG~~S~v~~~~-~p~~~~~~~~~~~~-~~y~~~-~----~~~~~l~~~~---~-~~~~~~P~~~~--~  311 (535)
                       .+++||+||+|||.+|.+++++ ++. .+......+. ..+... .    ...+....++   + .++.++|....  .
T Consensus       180 ~~~i~a~~vVgADG~~S~vR~~lg~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~  258 (549)
T 2r0c_A          180 TRAVHARYLVACDGASSPTRKALGIDA-PPRHRTQVFRNILFRAPELRSLLGERAALFFFLMLSSSLRFPLRALDGRGLY  258 (549)
T ss_dssp             EEEEEEEEEEECCCTTCHHHHHHTCCC-CBSSCCEEEEEEEEECTTHHHHHGGGCCSEEEEEEETTEEEEEEESSSSSEE
T ss_pred             EEEEEeCEEEECCCCCcHHHHHcCCCC-CCCcccceEEEEEEECCchHHhcCCCCceEEEEECCCCcEEEEEEECCCcEE
Confidence             4799999999999999999885 222 1111111111 122211 0    0000000000   1 11222232110  0


Q ss_pred             ------C---CCccchh---cchhcc-ccC-------CC--CCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHH
Q 009427          312 ------T---LDNLEIQ---RVIYGI-FPT-------YR--DSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGR  368 (535)
Q Consensus       312 ------~---~~~~~~~---r~~~g~-~P~-------~~--~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~  368 (535)
                            .   .+.-.+.   +..++. ++.       +.  ....+.+ .+|++++|||||.++|++|||+|++++||..
T Consensus       259 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~  338 (549)
T 2r0c_A          259 RLTVGVDDASKSTMDSFELVRRAVAFDTEIEVLSDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSGGFGMNTGIGSAAD  338 (549)
T ss_dssp             EEEEECSTTCCSCCCHHHHHHHHBCSCCCCEEEEEEEEEECCEECSCSEETTEEECGGGTEECCCGGGHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCCHHHHHHHHHHHhCCCCceeEEEEecchhHhhhHHhhcCCcEEEEccccccCCCccCCccccccHHHHH
Confidence                  0   0000011   111111 110       00  0011222 4999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 009427          369 LSTGVYEAVRG  379 (535)
Q Consensus       369 La~~l~~al~~  379 (535)
                      |+++|+..++.
T Consensus       339 La~~La~~l~g  349 (549)
T 2r0c_A          339 LGWKLAATLRG  349 (549)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHcC
Confidence            99999988864

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.87  E-value=5.3e-21  Score=212.68  Aligned_cols=157  Identities=18%  Similarity=0.214  Sum_probs=108.4

Q ss_pred             CcccEEEEc-chHHHHHHHHHHH-CCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHh-----hhcC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSF-KGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATA-----TKFN  180 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr-~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-----~~~~  180 (535)
                      .++||+||| ||+|+++|+.|++ .|++|+||||..... ..+...++...++.|.++|+.  +++.....     ..|.
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~--~~~~~~~~~~~~~~~~~  108 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFA--DSILKEACWINDVTFWK  108 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCH--HHHHHHSEEECEEEEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcH--HHHHHhcccccceEEEC
Confidence            469999999 9999999999999 999999999985432 223345777888888888873  22222110     0111


Q ss_pred             C-----Ccccccc--c-CcceeeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC----eEEEEEc---
Q 009427          181 P-----NRCGFEG--K-GEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN----AAVLLLA---  243 (535)
Q Consensus       181 ~-----~~~~~~~--~-~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~~----gv~v~~~---  243 (535)
                      +     +.+....  . ..........+.+++..+.+.|.+.+.+.|+  +++.+++|++++.+++    +++|+++   
T Consensus       109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~  188 (639)
T 2dkh_A          109 PDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCD  188 (639)
T ss_dssp             ECTTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECS
T ss_pred             CCCCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecc
Confidence            0     1000000  0 0000001112357889999999999999987  9999999999987753    5777664   


Q ss_pred             ---CC--eEEEcCeEEEccCCChHHHHHh
Q 009427          244 ---EG--KILSSHLIIDAMGNFSPVVKQA  267 (535)
Q Consensus       244 ---~G--~~i~a~lVV~AdG~~S~v~~~~  267 (535)
                         +|  .+++||+||+|||.+|.+++++
T Consensus       189 ~~~~G~~~~i~a~~vVgADG~~S~vR~~l  217 (639)
T 2dkh_A          189 AAHAGQIETVQARYVVGCDGARSNVRRAI  217 (639)
T ss_dssp             GGGTTCEEEEEEEEEEECCCTTCHHHHHT
T ss_pred             ccCCCCeEEEEeCEEEECCCcchHHHHHh
Confidence               45  5799999999999999998874

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.86  E-value=7.7e-21  Score=200.03  Aligned_cols=155  Identities=22%  Similarity=0.333  Sum_probs=108.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCc-EEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLR-VAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      ++||+||| ||+|+++|+.|+++|++ |+||||....+. .....+....++.|.++|+.  +.+..... ..  ....+
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~--~~l~~~~~-~~--~~~~~   78 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLG--PALAATAI-PT--HELRY   78 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCH--HHHHHHSE-EE--CEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCCh--HHHHhhCC-Cc--ceEEE
Confidence            58999999 99999999999999999 999999864322 22234567777778777872  22322111 00  01111


Q ss_pred             cc-cCc-cee--------eeccccccCHHHHHHHHHHHHHh-CC-CEEEeCceEEEEEEeCCeEEEEEcC---C--eEEE
Q 009427          187 EG-KGE-IWV--------EDILNLGVSPAKLIEIVKKRFIS-LG-GVIFEGYSVSSICTYENAAVLLLAE---G--KILS  249 (535)
Q Consensus       187 ~~-~~~-~~~--------~~~~~~~v~~~~l~~~L~~~a~~-~G-~~i~~~~~V~~i~~~~~gv~v~~~~---G--~~i~  249 (535)
                      .. .+. .+.        .....+.+++..|.+.|.+.+.+ .| ++++.+++|++++. ++++++++.+   |  .+++
T Consensus        79 ~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~  157 (410)
T 3c96_A           79 IDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALG  157 (410)
T ss_dssp             ECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEE
T ss_pred             EcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEe
Confidence            00 010 000        01112457888999999999876 36 48999999999988 6778887765   7  5799


Q ss_pred             cCeEEEccCCChHHHHHhCCC
Q 009427          250 SHLIIDAMGNFSPVVKQAFPA  270 (535)
Q Consensus       250 a~lVV~AdG~~S~v~~~~~p~  270 (535)
                      ||+||+|||.+|.+++++.+.
T Consensus       158 ad~vV~AdG~~S~vR~~l~~~  178 (410)
T 3c96_A          158 ADVLVGADGIHSAVRAHLHPD  178 (410)
T ss_dssp             ESEEEECCCTTCHHHHHHCTT
T ss_pred             cCEEEECCCccchhHHHhcCC
Confidence            999999999999999987654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.86  E-value=4.7e-21  Score=200.81  Aligned_cols=150  Identities=17%  Similarity=0.119  Sum_probs=105.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc--ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE--QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~--~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      .+||+||| |++|+++|+.|+++|++|+|+||.+.....  ....++...++.|.++|+.+ .      ..........+
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~-~------~~~~~~~~~~~   77 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVEL-D------SISVPSSSMEY   77 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCG-G------GTCBCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCcc-c------cccccccceEE
Confidence            58999999 999999999999999999999998642111  22235677777787788743 1      01111111111


Q ss_pred             cc--cCccee-eeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          187 EG--KGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       187 ~~--~~~~~~-~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ..  .+.... .......++...+.+.|.+.+  .|++++.+++|++++.++++++|++.+|++++||+||+|||.+|.+
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           78 VDALTGERVGSVPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVV  155 (397)
T ss_dssp             EETTTCCEEEEEECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred             EecCCCCccccccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchhH
Confidence            11  111110 011112245667778887765  4889999999999998888899999888889999999999999999


Q ss_pred             HHHhC
Q 009427          264 VKQAF  268 (535)
Q Consensus       264 ~~~~~  268 (535)
                      +++..
T Consensus       156 r~~~~  160 (397)
T 2vou_A          156 RKRLL  160 (397)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98865

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.85  E-value=2.1e-20  Score=205.66  Aligned_cols=285  Identities=21%  Similarity=0.253  Sum_probs=157.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC------CCcEEEEcccCCCCCc--ccccccHHHHHHHHHcCCCChHhHHHHH---hh
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK------GLRVAIVERNTLKGRE--QEWNISRKELLELVESGILVEDDIDEAT---AT  177 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~------G~~V~liEr~~~~~~~--~~~~is~~~l~~L~~lGl~~~~~~~~~~---~~  177 (535)
                      ++|||||| ||+|+++|+.|++.      |++|+||||....+..  ....+....++.|    + .  .+...-   ..
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~l----l-~--~~~~~g~~~~~  107 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEEL----F-P--DWKEKGAPLNT  107 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHH----C-T--THHHHTCCCCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHH----H-H--HHHhcCCceee
Confidence            58999999 99999999999999      9999999998644322  1112444555554    1 1  011100   00


Q ss_pred             hcCCCcccccccCcce---------eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EE-EEEc---
Q 009427          178 KFNPNRCGFEGKGEIW---------VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AV-LLLA---  243 (535)
Q Consensus       178 ~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~-v~~~---  243 (535)
                      ......+.+.......         ......+.+++..|.+.|.+++.+.|++|+.+++|+++..++++ ++ |.+.   
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g  187 (584)
T 2gmh_A          108 PVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVG  187 (584)
T ss_dssp             ECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEE
T ss_pred             eechhheeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCcc
Confidence            0000011111000000         00112456788999999999999999999999999999877654 43 5554   


Q ss_pred             ---CC---------eEEEcCeEEEccCCChHHHHHh---CCCCCCCCCceeEEEEEec---CCCC--CCCh-HH------
Q 009427          244 ---EG---------KILSSHLIIDAMGNFSPVVKQA---FPAGSGPLDRTTYMFTYID---PQAG--SPKL-EE------  296 (535)
Q Consensus       244 ---~G---------~~i~a~lVV~AdG~~S~v~~~~---~p~~~~~~~~~~~~~~y~~---~~~~--~~~l-~~------  296 (535)
                         +|         .+++||+||+|||.+|.+++++   +..... .+...+...+..   ....  .+.. ..      
T Consensus       188 ~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~-~~p~~~g~g~~~~~~v~~~~~~~~~~~~~~g~~~  266 (584)
T 2gmh_A          188 IQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRAN-CEPQTYGIGLKELWVIDEKKWKPGRVDHTVGWPL  266 (584)
T ss_dssp             ECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTT-SCCCCEEEEEEEEEECCGGGCCTTEEEEEEETTS
T ss_pred             ccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCC-CCchhHHhhhhhheecCcccccCCeEEEEEeccc
Confidence               23         5799999999999999998875   221110 111112112211   1000  0110 00      


Q ss_pred             --HHHHHhhhccCc--cC-C------CCC-------cc-chhc---------ch-------hc--cccCCCCCCCCcc-C
Q 009427          297 --LLERYWDLMPEY--QG-V------TLD-------NL-EIQR---------VI-------YG--IFPTYRDSPLPAA-F  338 (535)
Q Consensus       297 --~~~~~~~~~P~~--~~-~------~~~-------~~-~~~r---------~~-------~g--~~P~~~~~pl~~~-~  338 (535)
                        ...+..+++|..  .+ .      ..+       .. .+.+         .+       ++  .++.....+.+.+ .
T Consensus       267 ~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~l~~~~~~p~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (584)
T 2gmh_A          267 DRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNPYLSPFREFQRWKHHPSIKPTLEGGKRIAYGARALNEGGFQSIPKLTF  346 (584)
T ss_dssp             CTTSCEEEEEEECCSSSCEEEEEEEEETTCCCTTCCHHHHHHHHTTSTTTHHHHTTCEEEEEEEEEEECCGGGGCCCCEE
T ss_pred             cCCcCCceEEEEecCCCCeEEEEEEEecCcccccCChHHHHHHHHhChHHHHHhCCCeEEEecceEccCCCcccCCcccc
Confidence              000001122211  10 0      000       00 0000         00       00  0111111122222 5


Q ss_pred             CCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCC-CChhchhhhCCCCchhhhhHH
Q 009427          339 NRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDF-VDSYSLSLLNPYMPNLSASWL  402 (535)
Q Consensus       339 ~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~-~~~~~l~~l~~y~~~~~~~~~  402 (535)
                      +|+++||||||.++|++|+|++.|++|+..||+.|.++++.+. ....+...+..|+......|.
T Consensus       347 ~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g~~~~~~a~~~L~~Ye~~r~~~~v  411 (584)
T 2gmh_A          347 PGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVTEYEDNLKNSWV  411 (584)
T ss_dssp             TTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCTHHHHHHHTSHH
T ss_pred             CCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcCCcchhhhhhhHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999999999986542 222210014556665554443

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.85  E-value=6.5e-21  Score=198.37  Aligned_cols=254  Identities=18%  Similarity=0.084  Sum_probs=154.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .+||+||| |++|+++|+.|+++|++|+||||....+. .....++...++.|.++|+.  +.+.   ..........+.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~--~~~~---~~~~~~~~~~~~   85 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGAL--DDVL---QGSHTPPTYETW   85 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCH--HHHH---TTCBCCSCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCH--HHHH---hhCCCccceEEE
Confidence            58999999 99999999999999999999999865432 22233566777777777862  2221   111111111111


Q ss_pred             ccCccee-e---eccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          188 GKGEIWV-E---DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       188 ~~~~~~~-~---~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ..+.... .   ....+.+++..+.+.|.+.+.+.|++++.+++|++++.  ++ .|++.+|++++||+||+|||.+|.+
T Consensus        86 ~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~-~v~~~~g~~~~ad~vV~AdG~~s~v  162 (379)
T 3alj_A           86 MHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG-RLTLQTGEVLEADLIVGADGVGSKV  162 (379)
T ss_dssp             ETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT-EEEETTSCEEECSEEEECCCTTCHH
T ss_pred             eCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC-EEEECCCCEEEcCEEEECCCccHHH
Confidence            1111000 0   11134578899999999999999999999999999965  45 7788888889999999999999999


Q ss_pred             HHHhCCCCCCCCCceeEEEEEe---cCC----CCC-CC-hHH---HH--HHHhhhccCccCC-------CC-----Cccc
Q 009427          264 VKQAFPAGSGPLDRTTYMFTYI---DPQ----AGS-PK-LEE---LL--ERYWDLMPEYQGV-------TL-----DNLE  317 (535)
Q Consensus       264 ~~~~~p~~~~~~~~~~~~~~y~---~~~----~~~-~~-l~~---~~--~~~~~~~P~~~~~-------~~-----~~~~  317 (535)
                      +++..+. ..+ ....+ ..|.   ...    +.. +. ..+   .+  +++++++|...+.       ..     +.+.
T Consensus       163 r~~l~~~-~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~  239 (379)
T 3alj_A          163 RDSIGFK-QDR-WVSKD-GLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADPRGSSVP  239 (379)
T ss_dssp             HHHHCCC-EEE-EEEEE-EEEEEEEECCHHHHCSSCTTSEEEEECCSSSCCEEEEEECSSSEEEEEEEECTTCTTTTCSS
T ss_pred             HHHhcCC-CCc-CcCCc-EEEEEEechhhccCCcCCcccccccceEECCCCEEEEEECCCCcEEEEEEecCCCCCHHHHH
Confidence            9886542 110 01111 1111   110    111 11 111   11  2234445543220       00     0000


Q ss_pred             --hh------c---chhc--------cccCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427          318 --IQ------R---VIYG--------IFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  374 (535)
Q Consensus       318 --~~------r---~~~g--------~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~  374 (535)
                        +.      +   .+..        .+|.+...+.+.+ .+|+++||||||.++|++|||+|.+++||..|++.|.
T Consensus       240 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~ai~da~~La~~L~  316 (379)
T 3alj_A          240 IDLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLE  316 (379)
T ss_dssp             CCHHHHHHHCGGGHHHHHHHHTCTTCCEEEEEEEEESCSEETTEEECTHHHHCCCGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCchhccHHHHHhhCCccceEEecccccCCCCCcccCcEEEEEcccCCCCcchhhhHHHHHHHHHHHHHHhc
Confidence              00      0   0000        0011110112223 4899999999999999999999999999999999875

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.83  E-value=4.5e-20  Score=193.40  Aligned_cols=151  Identities=17%  Similarity=0.215  Sum_probs=101.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-c--ccccccH-HHHHHHHHcCCCChHhHHHHHhhhcCCCcc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-E--QEWNISR-KELLELVESGILVEDDIDEATATKFNPNRC  184 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-~--~~~~is~-~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~  184 (535)
                      ++||+||| |++|+++|+.|++.|++|+||||...... .  ..+.+.. ...+.|.++|++  +.+.....   .... 
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~--~~~~~~~~---~~~~-   99 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLL--QTYYDLAL---PMGV-   99 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCH--HHHHHHCB---CCCE-
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChH--HHHHHhhc---ccce-
Confidence            58999999 99999999999999999999999853221 1  1122221 234555566873  22222110   0001 


Q ss_pred             cccc-cCcceee-------eccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEc
Q 009427          185 GFEG-KGEIWVE-------DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (535)
Q Consensus       185 ~~~~-~~~~~~~-------~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~A  256 (535)
                      .+.. .+.....       ......+++..|.+.|.+++.+  ++++.+++|++++.++++++|++.+|++++||+||+|
T Consensus       100 ~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~A  177 (398)
T 2xdo_A          100 NIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLEN--DTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILA  177 (398)
T ss_dssp             EEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCT--TSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEEC
T ss_pred             EEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCC--CEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEEC
Confidence            1110 1111000       0112347888898888887643  6788999999998888889999988888999999999


Q ss_pred             cCCChHHHHHhC
Q 009427          257 MGNFSPVVKQAF  268 (535)
Q Consensus       257 dG~~S~v~~~~~  268 (535)
                      ||.+|.++++..
T Consensus       178 dG~~S~vR~~l~  189 (398)
T 2xdo_A          178 NGGMSKVRKFVT  189 (398)
T ss_dssp             SCTTCSCCTTTC
T ss_pred             CCcchhHHhhcc
Confidence            999999988753

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.79  E-value=5.8e-19  Score=191.02  Aligned_cols=175  Identities=10%  Similarity=0.067  Sum_probs=106.8

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCeEEEcCeEEEccCCChHHHHHhCCCCC-C--
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGS-G--  273 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p~~~-~--  273 (535)
                      .+.+++..+.+.|.+.+.+.|++++.+ +|+++..++++  +.|.+.+|++++||+||+|||.+|.++++.+.... .  
T Consensus       167 ~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~~~~~~~  245 (511)
T 2weu_A          167 AYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGRFQSFS  245 (511)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCCCEEECT
T ss_pred             eEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCCcccc
Confidence            355899999999999999999999999 99999876665  55777778789999999999999988665433210 0  


Q ss_pred             CCCce--eEEEEEecCCC--CCCC-hHH-HHHHHhhhccCccCCC---------CCccchh---cchhccccCCCC----
Q 009427          274 PLDRT--TYMFTYIDPQA--GSPK-LEE-LLERYWDLMPEYQGVT---------LDNLEIQ---RVIYGIFPTYRD----  331 (535)
Q Consensus       274 ~~~~~--~~~~~y~~~~~--~~~~-l~~-~~~~~~~~~P~~~~~~---------~~~~~~~---r~~~g~~P~~~~----  331 (535)
                      +....  .+.+......+  ..+. ... .-.+++|++|...+..         .+.....   +..++..|....    
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  325 (511)
T 2weu_A          246 DVLPNNRAVALRVPRENDEDMRPYTTATAMSAGWMWTIPLFKRDGNGYVYSDEFISPEEAERELRSTVAPGRDDLEANHI  325 (511)
T ss_dssp             TTCCCCEEEEEEEECSSGGGCCSSEEEEEETTEEEEEEECSSEEEEEEEECTTTSCHHHHHHHHHHHHCTTCTTSCCEEE
T ss_pred             ccCcccceEEEEeccCCCCCCCcceeceecCCCcEEEEECCCceEEEEEECCCCCCHHHHHHHHHHHhCcccccccceeE
Confidence            00111  11111111111  1110 000 1134566666533110         0000000   001121111000    


Q ss_pred             ----CCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427          332 ----SPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  374 (535)
Q Consensus       332 ----~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~  374 (535)
                          ...+.+ .+|+++||||||.++|++|+|++.+++++..|++.|.
T Consensus       326 ~~~~~~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l~  373 (511)
T 2weu_A          326 QMRIGRNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHFP  373 (511)
T ss_dssp             ECCCEEESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTCC
T ss_pred             EeeccccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHhc
Confidence                011222 4999999999999999999999999999999888764

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.78  E-value=2.9e-19  Score=194.31  Aligned_cols=263  Identities=14%  Similarity=0.146  Sum_probs=148.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHH------------CCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh
Q 009427          110 TFDVIVCG-GTLGIFIATALSF------------KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA  176 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr------------~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~  176 (535)
                      .+|||||| |++|+++|+.|++            .|++|+|||+...+.......+.+...+.|..+|+.+.+.+...-.
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~~g~g~~~~p~~~~~l~~lGi~e~~~~~~~~~   86 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRSTLSKIGIDENDFIRQCDA   86 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCCCCSCEECCTHHHHHHHHHTCCHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCCcceeeechHhHHHHHHHcCCCHHHHHHHcCC
Confidence            58999999 9999999999999            9999999999765432211123344455555568742211222110


Q ss_pred             h--------hcCC------C-c--cccc-----------c------cC--------------------------cceeee
Q 009427          177 T--------KFNP------N-R--CGFE-----------G------KG--------------------------EIWVED  196 (535)
Q Consensus       177 ~--------~~~~------~-~--~~~~-----------~------~~--------------------------~~~~~~  196 (535)
                      .        .|..      + .  ..+.           .      ..                          ......
T Consensus        87 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~~~~~~~~~~~~  166 (526)
T 2pyx_A           87 SFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPKSIVTAQYHFQN  166 (526)
T ss_dssp             EEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSSCTTSCTTCCSS
T ss_pred             EEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchhhhhccccCCCC
Confidence            0        1110      0 0  0000           0      00                          000000


Q ss_pred             ccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE--EEEEcCCeEEEcCeEEEccCCChHHHHHhCCCCC-
Q 009427          197 ILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA--VLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGS-  272 (535)
Q Consensus       197 ~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv--~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p~~~-  272 (535)
                      ...+.+++..+.+.|.+.+.+ .|++++.+ +|+++..+++++  .|.+++|.+++||+||+|||.+|.++++.++... 
T Consensus       167 ~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~~~  245 (526)
T 2pyx_A          167 NYGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQVPFL  245 (526)
T ss_dssp             CCEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCCCEE
T ss_pred             CeeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCcc
Confidence            113458999999999999998 89999999 699998765553  4666677779999999999999988554333210 


Q ss_pred             C-C---CCceeEEEEEecCC---CCCCC-hHH-HHHHHhhhccCccCC---------CCCccchh----cchh--c----
Q 009427          273 G-P---LDRTTYMFTYIDPQ---AGSPK-LEE-LLERYWDLMPEYQGV---------TLDNLEIQ----RVIY--G----  324 (535)
Q Consensus       273 ~-~---~~~~~~~~~y~~~~---~~~~~-l~~-~~~~~~~~~P~~~~~---------~~~~~~~~----r~~~--g----  324 (535)
                      . +   .....+........   +..+. ... .-.+++|.+|...+.         ..++....    +.+.  +    
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~~~~l~  325 (526)
T 2pyx_A          246 SQKSVLFNDRALAIQVPYSDANSPIASCTHSTAQPNGWIWDIGLPTRKGVGYVYSSSHTNDIDAQKTLFNYLGVDGAAAD  325 (526)
T ss_dssp             ECHHHHCCCEEEEEEEECSSTTCCCCSSEEEEEETTEEEEEEECSSEEEEEEEECTTTCCHHHHHHHHHHHHTCCHHHHH
T ss_pred             cccccccCccEEEEEeeccCCCCCCCCceeEEecCCCeEEEeeCCCceEEEEEecCCCCChHHHHHHHHHHHHhcCcccc
Confidence            0 0   00011111111110   00110 000 012345555543210         00000000    0000  0    


Q ss_pred             -----cccCCCCCCCCc-cCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427          325 -----IFPTYRDSPLPA-AFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  374 (535)
Q Consensus       325 -----~~P~~~~~pl~~-~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~  374 (535)
                           .++.... ..+. +.+|+++||||||.++|++|+|++.+++|+..|++.|.
T Consensus       326 ~~~~~~~~~~~~-~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L~  380 (526)
T 2pyx_A          326 KLEPRQLAINPG-YRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQLP  380 (526)
T ss_dssp             HCCCEEEECCCE-EESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTCC
T ss_pred             cCCceEEecccC-ccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHhh
Confidence                 0111100 1122 24999999999999999999999999999998888664

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.78  E-value=1.1e-18  Score=190.20  Aligned_cols=264  Identities=14%  Similarity=0.089  Sum_probs=147.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHH---CCCcEEEEcccCCCCCcccccccHHHHH-HHHHcCCCChHhHHHHHh--h-----
Q 009427          110 TFDVIVCG-GTLGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELL-ELVESGILVEDDIDEATA--T-----  177 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr---~G~~V~liEr~~~~~~~~~~~is~~~l~-~L~~lGl~~~~~~~~~~~--~-----  177 (535)
                      .+|||||| |++|+++|+.|++   .|++|+|||+...+.......+...... .+..+|+...+.+.....  .     
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lG~~~~~~~~~~~~~~~~g~~~   84 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAFKAAIKF   84 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCCCCSCEECCTHHHHHTHHHHTCCHHHHGGGGTCEEECEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCCcCCCcccchhHHHHHHHHhCCCHHHHHHhcCchhhCCccc
Confidence            58999999 9999999999999   9999999999765432211122233333 344447632111111100  0     


Q ss_pred             -hcCC------CcccccccCc-----------------------ce-----------------------eeeccccccCH
Q 009427          178 -KFNP------NRCGFEGKGE-----------------------IW-----------------------VEDILNLGVSP  204 (535)
Q Consensus       178 -~~~~------~~~~~~~~~~-----------------------~~-----------------------~~~~~~~~v~~  204 (535)
                       .|..      ....+...+.                       .+                       ......+.+++
T Consensus        85 ~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~  164 (538)
T 2aqj_A           85 VNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHAWHFDA  164 (538)
T ss_dssp             ESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCCEEEECH
T ss_pred             cCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCccEEEeH
Confidence             0100      0000000000                       00                       00111345889


Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCeEEEcCeEEEccCCChHHHHHhCCCCC----CCC-Cc
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGS----GPL-DR  277 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p~~~----~~~-~~  277 (535)
                      ..+.+.|.+.+.+.|++++.+ +|+++..++++  +.|.+++|++++||+||+|||.+|.++++.++...    ... ..
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~~~~~~~~~~~~  243 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKEPFIDMSDYLLCD  243 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCCCEEECTTTCCCC
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCCCccccccccccc
Confidence            999999999999999999999 89999876554  45677778789999999999999988665443210    000 00


Q ss_pred             eeEEEEEecCCC---CCCC-hH-HHHHHHhhhccCccCC---------CCCccchhc---chhc--------cccCCCCC
Q 009427          278 TTYMFTYIDPQA---GSPK-LE-ELLERYWDLMPEYQGV---------TLDNLEIQR---VIYG--------IFPTYRDS  332 (535)
Q Consensus       278 ~~~~~~y~~~~~---~~~~-l~-~~~~~~~~~~P~~~~~---------~~~~~~~~r---~~~g--------~~P~~~~~  332 (535)
                      ..+........+   ..+. .. ..-.+++|++|...+.         ..+.-...+   ..++        .++.....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~g~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  323 (538)
T 2aqj_A          244 SAVASAVPNDDARDGVEPYTSSIAMNSGWTWKIPMLGRFGSGYVFSSHFTSRDQATADFLKLWGLSDNQPLNQIKFRVGR  323 (538)
T ss_dssp             EEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEEETTEEEEEEEECTTTSCHHHHHHHHHHHHTCCTTCCCEEEECCCEE
T ss_pred             eEEEEecccCCcccCCCCceeeeecCCceEEEecCCCceEEEEEEcCCCCChHHHHHHHHHHhcCCCCCCceEEeecccc
Confidence            111111110000   0010 00 0012345555543211         000000000   0011        01111100


Q ss_pred             CCCccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427          333 PLPAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  374 (535)
Q Consensus       333 pl~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~  374 (535)
                      ..+.+.+|+++||||||.++|++|+|++.+++|+..|++.|.
T Consensus       324 ~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L~  365 (538)
T 2aqj_A          324 NKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHFP  365 (538)
T ss_dssp             ESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             ccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHhh
Confidence            011235999999999999999999999999999998887653

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.77  E-value=1.9e-18  Score=188.88  Aligned_cols=173  Identities=13%  Similarity=0.068  Sum_probs=102.7

Q ss_pred             cccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCe--EEEEEcCCeEEEcCeEEEccCCChHHHHHhCCCCC----
Q 009427          200 LGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGS----  272 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~g--v~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p~~~----  272 (535)
                      +.+++..+.+.|.+.+.+. |++++.+ +|+++..++++  +.|.+.+|++++||+||+|||.+|.++++.+....    
T Consensus       189 ~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~~~~~~~  267 (550)
T 2e4g_A          189 WHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMS  267 (550)
T ss_dssp             EEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCCCEEECT
T ss_pred             eEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCCCccccc
Confidence            4488999999999999998 9999999 99999876655  55777788889999999999999988555433210    


Q ss_pred             --CCCCceeEEEEEecCCC---CCCC-hHH-HHHHHhhhccCccCC---------CCCccchh---cchhccccCCC---
Q 009427          273 --GPLDRTTYMFTYIDPQA---GSPK-LEE-LLERYWDLMPEYQGV---------TLDNLEIQ---RVIYGIFPTYR---  330 (535)
Q Consensus       273 --~~~~~~~~~~~y~~~~~---~~~~-l~~-~~~~~~~~~P~~~~~---------~~~~~~~~---r~~~g~~P~~~---  330 (535)
                        -+.+ ..+.+......+   ..+. ... .-.+++|++|.....         ..+.-...   +..++..|...   
T Consensus       268 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ipl~~~~~~g~v~~~~~~~~~~~~~~l~~~~~~~p~l~~~~  346 (550)
T 2e4g_A          268 DHLLND-SAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPMLGRFGTGYVYSSRFATEDEAVREFCEMWHLDPETQPLN  346 (550)
T ss_dssp             TTCCCC-EEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEECSSEEEEEEEECTTTSCHHHHHHHHHHHTTCCTTTSCCE
T ss_pred             cccccc-ceEEEeecccCCcccCCCceeeeecCCceEEEccCCCccceEEEEecCCCChHHHHHHHHHhhCcCcccCCCc
Confidence              0001 111111100000   0010 000 012344555532210         00000000   00111111100   


Q ss_pred             -----CCCCC-ccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHH
Q 009427          331 -----DSPLP-AAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVY  374 (535)
Q Consensus       331 -----~~pl~-~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~  374 (535)
                           ....+ .+.+|+++||||||.++|++|||++.+++++..|++.|.
T Consensus       347 ~i~~~~~~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L~  396 (550)
T 2e4g_A          347 RIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFP  396 (550)
T ss_dssp             EEECCCEEESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             eEEecCCCccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhcc
Confidence                 00112 234999999999999999999999999999999987653

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.70  E-value=2e-18  Score=179.85  Aligned_cols=247  Identities=12%  Similarity=0.062  Sum_probs=128.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCc-ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCC-Ccccc
Q 009427          112 DVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGRE-QEWNISRKELLELVESGILVEDDIDEATATKFNP-NRCGF  186 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~-~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~-~~~~~  186 (535)
                      ||+||| ||+|+++|+.|+++  |++|+|+||.+..... ....++...++.+...++..    +..+...+.+ ....+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~   77 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYL----DAPERLNPQFLEDFKL   77 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGS----SCGGGGCCEEECCEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhh----hhhHHHhhccccceEE
Confidence            899999 99999999999999  9999999998543110 00011111111110001100    0001111100 01111


Q ss_pred             cccCcceee--eccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH
Q 009427          187 EGKGEIWVE--DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       187 ~~~~~~~~~--~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~  264 (535)
                      ...+.....  ....+.+++..|.+.|.+.+.+.|++++.+++|++++..           .+++||+||+|||.+|. +
T Consensus        78 ~~~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S~-R  145 (381)
T 3c4a_A           78 VHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNHK-T  145 (381)
T ss_dssp             EESSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGGG-T
T ss_pred             EeCCeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCch-H
Confidence            111110000  111235788999999999999999999999999887421           12579999999999998 7


Q ss_pred             HHhCCCCCCCCC-ceeEEEEEecCCCCCCChHHHH----HHHhh--hccCccCC---------------CCCcc---chh
Q 009427          265 KQAFPAGSGPLD-RTTYMFTYIDPQAGSPKLEELL----ERYWD--LMPEYQGV---------------TLDNL---EIQ  319 (535)
Q Consensus       265 ~~~~p~~~~~~~-~~~~~~~y~~~~~~~~~l~~~~----~~~~~--~~P~~~~~---------------~~~~~---~~~  319 (535)
                      ++..+. .++.. .......|.......+.....+    .++++  .+|...+.               ..+..   ...
T Consensus       146 ~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (381)
T 3c4a_A          146 AHFTEA-LVPQVDYGRNKYIWYGTSQLFDQMNLVFRTHGKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASA  224 (381)
T ss_dssp             CCSSGG-GCCCCEEEEEEEEEEEESSCCSSEEEEEEEETTEEEEEEEEECSSSCEEEEEEECHHHHHHTTSSSSCHHHHH
T ss_pred             Hhhhhh-cCCCcccCCccEEEEecCCCCCcceeeEeeCCCcEEEEEEEEecCCeEEEEEECCccccccCCcccCChHHHH
Confidence            654211 01110 1111122222111101000000    11111  12221110               00000   000


Q ss_pred             c---chh-c------cc-------cCCCCCCCCcc-CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427          320 R---VIY-G------IF-------PTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE  375 (535)
Q Consensus       320 r---~~~-g------~~-------P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~  375 (535)
                      +   ..+ +      ++       +.....+.+.+ .+|++++|||||.++|++|||+|.|++||..|+++|.+
T Consensus       225 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~  298 (381)
T 3c4a_A          225 EYVAKVFQAELGGHGLVSQPGLGWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCT  298 (381)
T ss_dssp             HHHHHHTHHHHTTCCCBCCTTTCSEEEEECCCSCSEETTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCchhhcCCCcceeeeccccCCCcccCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhc
Confidence            0   000 0      01       00000112222 48999999999999999999999999999999999876

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.60  E-value=3e-15  Score=161.47  Aligned_cols=134  Identities=20%  Similarity=0.178  Sum_probs=97.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .+||+||| |++|+++|+.|++.|++|+|||+....++....++....++.+..+|+.      ... ..|..       
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~------~~~-~~~~~-------  157 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAK------KFY-GRFCT-------  157 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHH------HHC-TTTTC-------
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCc------ccc-ccccc-------
Confidence            58999999 9999999999999999999999986544433344555566666555531      100 01110       


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCeEEEEE--c-CC--eEEEcCeEEEccCCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENAAVLLL--A-EG--KILSSHLIIDAMGNF  260 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~---~~gv~v~~--~-~G--~~i~a~lVV~AdG~~  260 (535)
                       ..       ...++...+.+.|.+.+.+.|++++.+++|+++..+   ++++.|++  . +|  .+++||+||+|||.+
T Consensus       158 -~~-------~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~  229 (497)
T 2bry_A          158 -GT-------LDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGK  229 (497)
T ss_dssp             -TT-------CCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTT
T ss_pred             -cc-------cccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCC
Confidence             00       012456778889999998899999999999999764   24566666  3 55  469999999999999


Q ss_pred             hHHHH
Q 009427          261 SPVVK  265 (535)
Q Consensus       261 S~v~~  265 (535)
                      |.++.
T Consensus       230 S~~r~  234 (497)
T 2bry_A          230 FVPEG  234 (497)
T ss_dssp             CCCTT
T ss_pred             ccccc
Confidence            97764

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.57  E-value=7.9e-15  Score=155.28  Aligned_cols=138  Identities=13%  Similarity=0.100  Sum_probs=80.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC--cccc---cccHHHHHHHHHcCCCChHhHHHHHhh---hc-
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR--EQEW---NISRKELLELVESGILVEDDIDEATAT---KF-  179 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~--~~~~---~is~~~l~~L~~lGl~~~~~~~~~~~~---~~-  179 (535)
                      .+||+||| ||+|+++|+.|+++|++|+||||......  .+..   ......+..+..+|+-........+..   .+ 
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~  101 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNEWPSEEFGYFGHYYYVG  101 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTCCCSCHHHHCEEEEEEEEC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcChhhhhhhcccccceeEEEC
Confidence            47999999 99999999999999999999999852111  1111   122334444444554111110000000   00 


Q ss_pred             CCCcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCc-eEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          180 NPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGY-SVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~-~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                      .+..+.|.  +.   .......+++..+...|.+++.+.|++++... .+.++            +.....+++||+|||
T Consensus       102 ~~~~~~~~--~~---~~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~v~~~~l------------~~~~~~ad~VV~AdG  164 (430)
T 3ihm_A          102 GPQPMRFY--GD---LKAPSRAVDYRLYQPMLMRALEARGGKFCYDAVSAEDL------------EGLSEQYDLLVVCTG  164 (430)
T ss_dssp             SSSCEEEE--EE---EEEEEBEECHHHHHHHHHHHHHHTTCEEEECCCCGGGH------------HHHHTTSSEEEECCC
T ss_pred             CCCccccc--hh---cCCcceeecHHHHHHHHHHHHHHcCCEEEEEecchhhh------------hhhcccCCEEEECCC
Confidence            11111111  00   01224568899999999999999999887632 01111            001126899999999


Q ss_pred             CChHHH
Q 009427          259 NFSPVV  264 (535)
Q Consensus       259 ~~S~v~  264 (535)
                      ..|.++
T Consensus       165 ~~S~~~  170 (430)
T 3ihm_A          165 KYALGK  170 (430)
T ss_dssp             CTTGGG
T ss_pred             CcchHH
Confidence            998764

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.46  E-value=8.2e-13  Score=136.65  Aligned_cols=66  Identities=24%  Similarity=0.215  Sum_probs=56.6

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChH-HHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP-VVKQ  266 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~-v~~~  266 (535)
                      ..+++..+.+.|.+.+.+.|++++.+++|+++..+++++.|.+.+| +++||.||+|+|.+|. +...
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~  225 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQ  225 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHH
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHh
Confidence            4578899999999999999999999999999987777777777666 8999999999999987 4443

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.40  E-value=5.5e-12  Score=133.24  Aligned_cols=64  Identities=14%  Similarity=0.091  Sum_probs=58.0

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCc---eEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGY---SVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~---~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ..+++..+.+.|.+.+++.|+++++++   +|++|..++++++ |.+.+|++++||.||+|+|.+|.-
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~  223 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQ  223 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGG
T ss_pred             EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhh
Confidence            457889999999999999999999999   9999998888888 888888889999999999999863

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.38  E-value=6.8e-12  Score=128.46  Aligned_cols=67  Identities=16%  Similarity=0.060  Sum_probs=58.0

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCC--eEEEcCeEEEccCCChHHHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG--KILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G--~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      ..+++..+.+.|.+.+++.|++++++++|+++..++++ +.|.+.+|  .+++||.||+|+|.+|.....
T Consensus       145 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~  214 (369)
T 3dme_A          145 GIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLAR  214 (369)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHH
T ss_pred             EEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHH
Confidence            34789999999999999999999999999999887766 77888777  589999999999999965443

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.36  E-value=7e-12  Score=129.69  Aligned_cols=66  Identities=12%  Similarity=0.221  Sum_probs=56.9

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChHHHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVK  265 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~v~~  265 (535)
                      ...+++..+.+.|.+.+.+.|++++++++|++++.++++++ |.+.+| +++||.||+|+|.+|....
T Consensus       143 ~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~  209 (382)
T 1y56_B          143 DGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLIN  209 (382)
T ss_dssp             CCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHH
T ss_pred             CeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHH
Confidence            34578999999999999999999999999999988777777 777666 7999999999999985443

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.35  E-value=2.3e-11  Score=126.65  Aligned_cols=63  Identities=10%  Similarity=0.115  Sum_probs=54.7

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ..+++..+.+.|.+.+.+.|++++++++|++++.++++++|.+.+| +++|+.||+|+|.++.-
T Consensus       148 g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~  210 (397)
T 2oln_A          148 GTIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYTND  210 (397)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGHHH
T ss_pred             CEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcChHH
Confidence            3467889999999999999999999999999998888888877554 79999999999999653

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.33  E-value=5.9e-12  Score=129.75  Aligned_cols=66  Identities=11%  Similarity=0.121  Sum_probs=58.3

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      ..+++..+.+.|.+.+++.|++++++++|+++..+++++.|++.+| +++||.||.|+|.+|.....
T Consensus       149 ~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~  214 (381)
T 3nyc_A          149 ADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAG  214 (381)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHH
T ss_pred             ceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHH
Confidence            4578999999999999999999999999999998888888888666 89999999999999865443

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.30  E-value=1.5e-11  Score=126.69  Aligned_cols=64  Identities=13%  Similarity=0.049  Sum_probs=55.6

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ...+++..+.+.|.+.+.+.|++++++++|++++.+++++.|++.+| +++||.||+|+|.+|.-
T Consensus       143 ~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~  206 (372)
T 2uzz_A          143 SGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVKD  206 (372)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGGG
T ss_pred             CcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHHh
Confidence            34578899999999999999999999999999988777788887666 59999999999998853

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.30  E-value=2.8e-11  Score=135.61  Aligned_cols=65  Identities=12%  Similarity=0.042  Sum_probs=57.1

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe-EEEcCeEEEccCCChHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~-~i~a~lVV~AdG~~S~v  263 (535)
                      ...+++..+.+.|.+.+.+.|++++++++|+++..+++++.|.+.+|. +++|+.||+|+|.+|..
T Consensus       406 ~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~~  471 (689)
T 3pvc_A          406 GGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLPE  471 (689)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTTC
T ss_pred             CeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchhc
Confidence            345789999999999999999999999999999988888888887776 79999999999998753

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.30  E-value=3.6e-11  Score=126.64  Aligned_cols=141  Identities=17%  Similarity=0.199  Sum_probs=90.2

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcc------cccc-----cH--------HHHH-HHHHcCCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQ------EWNI-----SR--------KELL-ELVESGILV  167 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~------~~~i-----s~--------~~l~-~L~~lGl~~  167 (535)
                      .++|||||| |++|+++|+.|+++|++|+|||+....+...      ..++     ..        ..+. .+..   ++
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~---~~  102 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALAR---YR  102 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHH---SC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHh---cC
Confidence            368999999 9999999999999999999999986432110      0000     00        0000 0000   01


Q ss_pred             hHhHHHHHhhhcCCCcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeE
Q 009427          168 EDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKI  247 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~  247 (535)
                      ..++..... ...   +.+.........    ...+...+.+.|.+.+.+.|++++.+++|+++..+++++.|.+.+| +
T Consensus       103 ~~~~~~~~~-~~G---i~~~~~~~g~~~----~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~  173 (417)
T 3v76_A          103 PQDFVALVE-RHG---IGWHEKTLGQLF----CDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-T  173 (417)
T ss_dssp             HHHHHHHHH-HTT---CCEEECSTTEEE----ESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-E
T ss_pred             HHHHHHHHH-HcC---CCcEEeeCCEEe----eCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-E
Confidence            111111110 000   111001111110    1245678889999999999999999999999998888888888777 8


Q ss_pred             EEcCeEEEccCCCh
Q 009427          248 LSSHLIIDAMGNFS  261 (535)
Q Consensus       248 i~a~lVV~AdG~~S  261 (535)
                      ++||.||+|+|.+|
T Consensus       174 i~ad~VIlAtG~~S  187 (417)
T 3v76_A          174 VDAASLVVASGGKS  187 (417)
T ss_dssp             EEESEEEECCCCSS
T ss_pred             EEeeEEEECCCCcc
Confidence            99999999999998

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.29  E-value=2.7e-11  Score=135.42  Aligned_cols=65  Identities=17%  Similarity=0.158  Sum_probs=58.7

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ...+++..+.+.|.+.+.+.|++++++++|+++..+++++.|++.+|.+++||.||+|+|.+|..
T Consensus       411 ~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~~  475 (676)
T 3ps9_A          411 GGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQISR  475 (676)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGGC
T ss_pred             CeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchhc
Confidence            34578999999999999999999999999999999989988888787789999999999999863

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.26  E-value=6.7e-11  Score=122.39  Aligned_cols=64  Identities=13%  Similarity=0.132  Sum_probs=55.5

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~  264 (535)
                      ..+++..+.+.|.+.+.+.|++++++++|++++.+++++.|++.+| +++||.||+|+|.++.-.
T Consensus       145 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l  208 (389)
T 2gf3_A          145 GVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKL  208 (389)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHH
T ss_pred             cEEeHHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHHHH
Confidence            4467889999999999999999999999999988777788877555 799999999999998644

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.26  E-value=2.7e-11  Score=128.71  Aligned_cols=147  Identities=22%  Similarity=0.297  Sum_probs=90.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcc------ccccc-HHHHHHHHH-cCCCChHhHHHHHhhhcC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQ------EWNIS-RKELLELVE-SGILVEDDIDEATATKFN  180 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~------~~~is-~~~l~~L~~-lGl~~~~~~~~~~~~~~~  180 (535)
                      ++|||||| |++|+++|+.|+++|.+|+||||....++..      ..++. ....+.+.+ .+. ....+...+ ..+.
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~  103 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPG-NGRFLYSAF-SIFN  103 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTB-TGGGGHHHH-HHSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhcc-ChHHHHHHH-HhcC
Confidence            58999999 9999999999999999999999986432110      00000 000111111 110 000000000 0111


Q ss_pred             CC---------cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEc
Q 009427          181 PN---------RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSS  250 (535)
Q Consensus       181 ~~---------~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a  250 (535)
                      ..         .+.+..........   ...+...+.+.|.+++.+.|++++.+++|+++..++++ +.|.+.+|++++|
T Consensus       104 ~~~~~~~~~~~G~~~~~~~~g~~~p---~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~A  180 (447)
T 2i0z_A          104 NEDIITFFENLGVKLKEEDHGRMFP---VSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLET  180 (447)
T ss_dssp             HHHHHHHHHHTTCCEEECGGGEEEE---TTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEEC
T ss_pred             HHHHHHHHHhcCCceEEeeCCEEEC---CCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEEC
Confidence            00         00010000011101   01135788899999999999999999999999877776 6677777877999


Q ss_pred             CeEEEccCCCh
Q 009427          251 HLIIDAMGNFS  261 (535)
Q Consensus       251 ~lVV~AdG~~S  261 (535)
                      |.||+|+|.+|
T Consensus       181 d~VVlAtGg~s  191 (447)
T 2i0z_A          181 NHVVIAVGGKS  191 (447)
T ss_dssp             SCEEECCCCSS
T ss_pred             CEEEECCCCCc
Confidence            99999999999

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.25  E-value=5.8e-11  Score=123.57  Aligned_cols=66  Identities=11%  Similarity=0.037  Sum_probs=55.0

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCCChHHHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNFSPVVK  265 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~~S~v~~  265 (535)
                      ...+++..+.+.|.+.+.+.|++++.+++|+++..++++ +.|.+.+| +++||.||+|+|.+|....
T Consensus       168 ~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~  234 (405)
T 2gag_B          168 AGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLA  234 (405)
T ss_dssp             CBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHH
T ss_pred             CccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHH
Confidence            345788999999999999999999999999999876665 44667666 7999999999999985433

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.23  E-value=2.3e-10  Score=123.37  Aligned_cols=67  Identities=15%  Similarity=0.158  Sum_probs=56.3

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCe--EEEcCeEEEccCCChHHHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G~--~i~a~lVV~AdG~~S~v~~~  266 (535)
                      ..+++.++...|.+.+.+.|++++.+++|+++..+++.+.|.+.   +|+  +++||.||+|+|.+|.....
T Consensus       144 g~v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~  215 (501)
T 2qcu_A          144 CWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFD  215 (501)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHH
T ss_pred             CEEcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHH
Confidence            34799999999999999999999999999999887765666663   464  79999999999999975443

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.22  E-value=8.8e-11  Score=127.46  Aligned_cols=60  Identities=22%  Similarity=0.319  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChH
Q 009427          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       203 ~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                      +...+.+.|.+.+.+.|++++++++|+++..+++++. |.+.+|+++.||.||+|+|++|.
T Consensus       218 ~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          218 KLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             hHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            4567888899999999999999999999987766654 77888888999999999999985

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.21  E-value=1.9e-10  Score=125.71  Aligned_cols=67  Identities=15%  Similarity=0.254  Sum_probs=55.8

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcC---C--eEEEcCeEEEccCCChHHHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAE---G--KILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~---G--~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      ..+++.++...|.+.+.+.|++++.+++|+++..+++++. |.+.+   |  .+++|+.||.|+|.+|.-..+
T Consensus       165 g~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~  237 (561)
T 3da1_A          165 YRTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLRE  237 (561)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHH
T ss_pred             ceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHH
Confidence            3578999999999999999999999999999998877643 55543   3  479999999999999965544

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.16  E-value=6.4e-11  Score=124.05  Aligned_cols=65  Identities=15%  Similarity=0.233  Sum_probs=49.8

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEE---------EEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh-HHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVS---------SICTYENAAVLLLAEGKILSSHLIIDAMGNFS-PVVK  265 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~---------~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S-~v~~  265 (535)
                      ..+++..+.+.|.+.+.+.|++++++++|+         ++..+++++.|.+.+| +++||.||+|+|.+| .+++
T Consensus       167 g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~  241 (405)
T 3c4n_A          167 LTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVE  241 (405)
T ss_dssp             EEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHH
T ss_pred             EEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHH
Confidence            457889999999999999999999999999         8876666666666555 799999999999998 4555

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.15  E-value=3.2e-10  Score=118.72  Aligned_cols=138  Identities=20%  Similarity=0.234  Sum_probs=86.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC-------ccc--ccc--cHH--------HHHH-HHHcCCCCh
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR-------EQE--WNI--SRK--------ELLE-LVESGILVE  168 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~-------~~~--~~i--s~~--------~l~~-L~~lGl~~~  168 (535)
                      ++||+||| |++|+++|+.|+++|.+|+||||....+.       .++  .+.  ...        .+.. +..   ++.
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~---~~~   80 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALAR---YTN   80 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHH---SCH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHh---CCH
Confidence            58999999 99999999999999999999999863221       000  000  000        0000 000   000


Q ss_pred             HhHHHHHhhhcCCCccccc--ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe----CCeEEEEE
Q 009427          169 DDIDEATATKFNPNRCGFE--GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY----ENAAVLLL  242 (535)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~----~~gv~v~~  242 (535)
                      .++.... ..+.   +.+.  ..+..+ +    .. +...+.+.|.+.+.+.|++++.+++|+++..+    ++++.|++
T Consensus        81 ~~~~~~~-~~~G---i~~~~~~~g~~~-p----~~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~  150 (401)
T 2gqf_A           81 WDFISLV-AEQG---ITYHEKELGQLF-C----DE-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV  150 (401)
T ss_dssp             HHHHHHH-HHTT---CCEEECSTTEEE-E----TT-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE
T ss_pred             HHHHHHH-HhCC---CceEECcCCEEc-c----CC-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEE
Confidence            0000000 0000   0010  011111 0    11 56788899999999999999999999999876    56677877


Q ss_pred             cCCeEEEcCeEEEccCCCh
Q 009427          243 AEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       243 ~~G~~i~a~lVV~AdG~~S  261 (535)
                      .+| +++||.||+|+|.+|
T Consensus       151 ~~g-~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          151 NST-QWQCKNLIVATGGLS  168 (401)
T ss_dssp             TTE-EEEESEEEECCCCSS
T ss_pred             CCC-EEECCEEEECCCCcc
Confidence            655 799999999999988

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.15  E-value=3.2e-10  Score=124.09  Aligned_cols=155  Identities=14%  Similarity=0.130  Sum_probs=90.6

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c----c-----------H-HHHHHHHHcC--CC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I----S-----------R-KELLELVESG--IL  166 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i----s-----------~-~~l~~L~~lG--l~  166 (535)
                      .++|||||| |++|+++|+.|+++|.+|+||||....++...+.   +    +           . ..++.+.+.+  ..
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~  199 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN  199 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            469999999 9999999999999999999999986544321110   0    1           0 0111111111  11


Q ss_pred             ChHhHHHHHh------hhcCCCcccccc----cCcce--eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe
Q 009427          167 VEDDIDEATA------TKFNPNRCGFEG----KGEIW--VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY  234 (535)
Q Consensus       167 ~~~~~~~~~~------~~~~~~~~~~~~----~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~  234 (535)
                      +.+.++....      ..+....+.|..    .+..+  ........++...+.+.|.+.+.+.|++++++++|+++..+
T Consensus       200 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~  279 (566)
T 1qo8_A          200 DIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN  279 (566)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC
T ss_pred             CHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEC
Confidence            1111111000      000000011100    00000  00000111346788899999999999999999999999877


Q ss_pred             C-CeE---EEEEcCCe--EEEcCeEEEccCCChHH
Q 009427          235 E-NAA---VLLLAEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       235 ~-~gv---~v~~~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      + +.+   ++...+|+  +++|+.||+|+|.+|..
T Consensus       280 ~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~  314 (566)
T 1qo8_A          280 DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMN  314 (566)
T ss_dssp             TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTC
T ss_pred             CCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccC
Confidence            6 543   33333665  68999999999999865

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.14  E-value=2.5e-10  Score=116.34  Aligned_cols=128  Identities=22%  Similarity=0.361  Sum_probs=83.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCccccc---------ccHHHHHHHHHcCCCChHhHHHHHhh
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATAT  177 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~---------is~~~l~~L~~lGl~~~~~~~~~~~~  177 (535)
                      ++||+||| |++|+++|+.|+++  |++|+|||+....+.. .|.         +.....+.+.++|+            
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg-~~~~g~~~~~~~~~~~~~~~L~~~Gv------------  145 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG-AWLGGQLFSAMVMRKPADVFLDEVGV------------  145 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTT-TTCCBTTCCCEEEETTTHHHHHHHTC------------
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCc-cccCCccchhhhcchHHHHHHHHcCC------------
Confidence            58999999 99999999999997  9999999998644321 121         01111111111122            


Q ss_pred             hcCCCcccccccCcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCC--------------------
Q 009427          178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYEN--------------------  236 (535)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~--------------------  236 (535)
                      .|.       ..+..+      ...+...+.+.|.+++.+ .|++++.++.|+++..+++                    
T Consensus       146 ~~~-------~~G~~~------~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~r  212 (344)
T 3jsk_A          146 PYE-------DEGDYV------VVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVR  212 (344)
T ss_dssp             CCE-------ECSSEE------EESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEE
T ss_pred             ccc-------ccCCeE------EEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCce
Confidence            011       011111      112356777889999888 4899999999999987652                    


Q ss_pred             --eEEEEE----c--------CCeEEEcCeEEEccCCChHH
Q 009427          237 --AAVLLL----A--------EGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       237 --gv~v~~----~--------~G~~i~a~lVV~AdG~~S~v  263 (535)
                        ++++..    .        +..+++|++||+|||+.|++
T Consensus       213 V~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v  253 (344)
T 3jsk_A          213 IAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPF  253 (344)
T ss_dssp             EEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSS
T ss_pred             EeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchh
Confidence              122221    1        22579999999999999874

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.13  E-value=4e-10  Score=112.27  Aligned_cols=129  Identities=19%  Similarity=0.347  Sum_probs=83.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccCCCCCcccccc---------cHHHHHHHHHcCCCChHhHHHHHhhh
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGREQEWNI---------SRKELLELVESGILVEDDIDEATATK  178 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~~~~~~~~~~i---------s~~~l~~L~~lGl~~~~~~~~~~~~~  178 (535)
                      ++||+||| |++|+++|+.|+++ |.+|+||||....+.. .|..         .....+.+.++|+            .
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~-~~~~~~~~~~~~~~~~~~~~l~~~G~------------~  105 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG-AWLGGQLFSAMIVRKPAHLFLDEIGV------------A  105 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT-TTCCSTTCCCEEEETTTHHHHHHHTC------------C
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCc-eecCCcchHHHHcCcHHHHHHHHcCC------------C
Confidence            58999999 99999999999997 9999999998643321 1110         0000111111121            0


Q ss_pred             cCCCcccccccCcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEc---------CC--
Q 009427          179 FNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLA---------EG--  245 (535)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~-v~~~---------~G--  245 (535)
                      |.       ..+. +.     ...+...+...|.+++.+ .|++++.+++|+++..+++.+. +.+.         +|  
T Consensus       106 ~~-------~~~~-~~-----~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~  172 (284)
T 1rp0_A          106 YD-------EQDT-YV-----VVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSC  172 (284)
T ss_dssp             CE-------ECSS-EE-----EESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSC
T ss_pred             cc-------cCCC-EE-----EecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCcccc
Confidence            10       0010 10     112556777888888876 6999999999999988776542 3321         22  


Q ss_pred             ---eEEEcCeEEEccCCChHHH
Q 009427          246 ---KILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       246 ---~~i~a~lVV~AdG~~S~v~  264 (535)
                         .+++||.||+|+|..|.++
T Consensus       173 g~~~~i~ad~VV~AtG~~s~~~  194 (284)
T 1rp0_A          173 MDPNVMEAKIVVSSCGHDGPFG  194 (284)
T ss_dssp             CCCEEEEEEEEEECCCSSSTTT
T ss_pred             CceEEEECCEEEECCCCchHHH
Confidence               5799999999999887554

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.13  E-value=4.9e-10  Score=118.59  Aligned_cols=64  Identities=19%  Similarity=0.186  Sum_probs=53.5

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE---------------eCCeE-EEEEcCCeEE--EcCeEEEccCCCh
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT---------------YENAA-VLLLAEGKIL--SSHLIIDAMGNFS  261 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~---------------~~~gv-~v~~~~G~~i--~a~lVV~AdG~~S  261 (535)
                      ..+++..+.+.|.+.+.+.|++++++++|+++..               +++++ .|.+.+| ++  +||.||.|+|.+|
T Consensus       176 ~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          176 GFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred             eEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence            4478899999999999999999999999999987               44444 4666666 68  9999999999998


Q ss_pred             HHH
Q 009427          262 PVV  264 (535)
Q Consensus       262 ~v~  264 (535)
                      .-.
T Consensus       255 ~~l  257 (448)
T 3axb_A          255 NRL  257 (448)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            733

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.12  E-value=6.3e-10  Score=127.14  Aligned_cols=68  Identities=16%  Similarity=0.222  Sum_probs=57.5

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCCChHHHHHh
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVVKQA  267 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~~S~v~~~~  267 (535)
                      ...+++..+.+.|.+.+.+.|++++++++|+++..+++++ .|.+.+| +++||.||.|+|.+|....+.
T Consensus       145 ~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~  213 (830)
T 1pj5_A          145 DGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAM  213 (830)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHT
T ss_pred             CceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHH
Confidence            3457899999999999999999999999999998877775 3666555 799999999999999765543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.12  E-value=1.3e-09  Score=119.32  Aligned_cols=153  Identities=13%  Similarity=0.147  Sum_probs=88.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c----c-----------HH-HHHHHHHcC--CCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I----S-----------RK-ELLELVESG--ILV  167 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i----s-----------~~-~l~~L~~lG--l~~  167 (535)
                      ++|||||| |++|+++|+.|+++|++|+||||....++...+.   +    +           .. .+..+...|  ..+
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND  205 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            68999999 9999999999999999999999986544321110   0    0           00 011111111  111


Q ss_pred             hHhHHHHHh-----hhc-CCCccccc----ccCccee--eeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC
Q 009427          168 EDDIDEATA-----TKF-NPNRCGFE----GKGEIWV--EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE  235 (535)
Q Consensus       168 ~~~~~~~~~-----~~~-~~~~~~~~----~~~~~~~--~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~  235 (535)
                      .+.++....     ..| ....+.|.    ..+..+.  ............+.+.|.+.+.+.|++++++++|+++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~  285 (571)
T 1y0p_A          206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD  285 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC
Confidence            111110000     000 00001110    0000000  00001113356788999999999999999999999998766


Q ss_pred             -CeE---EEEEcCCe--EEEcCeEEEccCCChH
Q 009427          236 -NAA---VLLLAEGK--ILSSHLIIDAMGNFSP  262 (535)
Q Consensus       236 -~gv---~v~~~~G~--~i~a~lVV~AdG~~S~  262 (535)
                       +.+   ++...+|+  ++.|+.||+|+|.++.
T Consensus       286 ~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          286 KGTVKGILVKGMYKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             TSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             CCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence             433   33333565  6899999999999885

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.10  E-value=1.9e-09  Score=103.15  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=32.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      ++||+||| ||+|+++|+.|+++|++|+|+||....
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            48999999 999999999999999999999998543

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.09  E-value=8.2e-10  Score=121.19  Aligned_cols=145  Identities=19%  Similarity=0.234  Sum_probs=89.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC--CCCCccc---ccccH-HHHHHHHHcCCCChHhHHHHHhhhcCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT--LKGREQE---WNISR-KELLELVESGILVEDDIDEATATKFNPN  182 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~--~~~~~~~---~~is~-~~l~~L~~lGl~~~~~~~~~~~~~~~~~  182 (535)
                      +||||||| |++|+++|+.|++.|.+|+|||+..  ++.....   ..+.. ..++.+..+|-.-....+. ....|.  
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~-~gi~f~--  104 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQ-AGIQFR--  104 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHH-HEEEEE--
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhh-cccchh--
Confidence            69999999 9999999999999999999999973  3221110   11111 2233333333210100110 000110  


Q ss_pred             cccccccCcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCCC
Q 009427          183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      ... ...+...  ......+|+..+.+.+.+.+.+ .|++++ +++|+++..+++.+ .|.+.+|.+++|+.||+|||.+
T Consensus       105 ~l~-~~kgpav--~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~  180 (651)
T 3ces_A          105 ILN-ASKGPAV--RATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTF  180 (651)
T ss_dssp             EES-TTSCGGG--CEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTT
T ss_pred             hhh-cccCccc--ccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCC
Confidence            000 0011100  0112347888888999998887 588885 67999998766655 4667778889999999999987


Q ss_pred             h
Q 009427          261 S  261 (535)
Q Consensus       261 S  261 (535)
                      |
T Consensus       181 s  181 (651)
T 3ces_A          181 L  181 (651)
T ss_dssp             T
T ss_pred             c
Confidence            6

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.08  E-value=1.4e-09  Score=104.91  Aligned_cols=123  Identities=17%  Similarity=0.113  Sum_probs=83.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      +|||+||| |++|+.+|+.|++.|.+|+|||+.....+. ..+..         .+-+....+..    .+..      .
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~-~~~~~---------~~~~~~~~~~~----~~~d------~   62 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMM-PFLPP---------KPPFPPGSLLE----RAYD------P   62 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC-CSSCC---------CSCCCTTCHHH----HHCC------T
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCc-ccCcc---------ccccchhhHHh----hhcc------C
Confidence            58999999 999999999999999999999997311110 00000         00000000000    0000      0


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCCChHHH
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~~S~v~  264 (535)
                      .           +.++..+.+.|.+.+.+. |++++ +++|+++..+++.+ .|.+.+|.+++||.||+|+|.+|..+
T Consensus        63 ~-----------g~~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~  128 (232)
T 2cul_A           63 K-----------DERVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGAR  128 (232)
T ss_dssp             T-----------CCCHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCE
T ss_pred             C-----------CCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhc
Confidence            0           015677888899999887 88888 57999998877765 46677787899999999999987543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.07  E-value=1.1e-09  Score=120.13  Aligned_cols=145  Identities=17%  Similarity=0.185  Sum_probs=90.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC--CCCCccccc---cc-HHHHHHHHHcCCCChHhHHHHHhhhcCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT--LKGREQEWN---IS-RKELLELVESGILVEDDIDEATATKFNPN  182 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~--~~~~~~~~~---is-~~~l~~L~~lGl~~~~~~~~~~~~~~~~~  182 (535)
                      +||||||| |++|+++|+.||+.|.+|+|||+..  ++.......   +. .+.++.+..++-+.....+.. ...|.  
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~-gi~f~--   97 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDAT-GIQFR--   97 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHH-EEEEE--
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhc-CCchh--
Confidence            69999999 9999999999999999999999973  332211111   11 122333322221111111110 00110  


Q ss_pred             cccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCC
Q 009427          183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      .. ....+...  ......+|+..+.+.+.+.+.+. |++++. .+|+++..+++.+. |.+.+|.+++|+.||+|||.+
T Consensus        98 ~l-~~~kgpav--~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~  173 (641)
T 3cp8_A           98 ML-NRSKGPAM--HSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTF  173 (641)
T ss_dssp             EE-CSSSCTTT--CEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTC
T ss_pred             hc-ccccCccc--cchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCC
Confidence            00 00011111  01123578888889998888874 888864 58999988877776 777788899999999999987


Q ss_pred             h
Q 009427          261 S  261 (535)
Q Consensus       261 S  261 (535)
                      +
T Consensus       174 s  174 (641)
T 3cp8_A          174 L  174 (641)
T ss_dssp             B
T ss_pred             C
Confidence            4

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.07  E-value=1.3e-09  Score=100.55  Aligned_cols=170  Identities=16%  Similarity=0.149  Sum_probs=115.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      |||+||| |++|+.+|..|++.|.+|+|+|+.+-.- .+..             .+           ..+ +.   +   
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~-~~~~-------------~~-----------~~~-~~---~---   49 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKV-KGVS-------------RV-----------PNY-PG---L---   49 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTT-TTCS-------------CC-----------CCS-TT---C---
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcc-cCch-------------hh-----------hcc-CC---C---
Confidence            7999999 9999999999999999999999974100 0000             00           000 00   0   


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHHhCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFP  269 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p  269 (535)
                               ...+....+.+.+.+.+.+.|++++.+ +|++++.+++++.+++++| ++.+|.||.|+|..+.+++.. +
T Consensus        50 ---------~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~-g  117 (180)
T 2ywl_A           50 ---------LDEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLL-G  117 (180)
T ss_dssp             ---------TTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHH-T
T ss_pred             ---------cCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCccccC-C
Confidence                     011345677788888898999999999 9999987777788888777 899999999999988664442 1


Q ss_pred             CCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhccccCCCCCCCCccCCCeeEeecCCC
Q 009427          270 AGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFGDASG  349 (535)
Q Consensus       270 ~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl~~~~~rvlliGDAA~  349 (535)
                      .     +     +. ..                                      .+...  ..+++..++++++||++.
T Consensus       118 ~-----~-----~~-~g--------------------------------------~i~vd--~~~~t~~~~i~a~GD~~~  146 (180)
T 2ywl_A          118 L-----T-----RR-GA--------------------------------------YIDTD--EGGRTSYPRVYAAGVARG  146 (180)
T ss_dssp             C-----C-----EE-TT--------------------------------------EECCC--TTCBCSSTTEEECGGGGT
T ss_pred             C-----C-----cc-Cc--------------------------------------eEEeC--CCCCcCCCCEEEeecccC
Confidence            1     0     00 00                                      00000  011122468999999998


Q ss_pred             cccccccccchHHHHHHHHHHHHHHHHHhC
Q 009427          350 IQSPVSFGGFGSLTRHLGRLSTGVYEAVRG  379 (535)
Q Consensus       350 ~~~P~~G~Gi~~al~da~~La~~l~~al~~  379 (535)
                      ...|    -...|+.++..++..|...++.
T Consensus       147 ~~~~----~~~~A~~~g~~aa~~i~~~~~~  172 (180)
T 2ywl_A          147 KVPG----HAIISAGDGAYVAVHLVSDLRG  172 (180)
T ss_dssp             CCSC----CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchh----hHHHHHHhHHHHHHHHHHHhhh
Confidence            7554    2356788888888888776653

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.07  E-value=1.1e-09  Score=119.72  Aligned_cols=145  Identities=23%  Similarity=0.211  Sum_probs=89.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC--CCCCccc---ccccH-HHHHHHHHcCCCChHhHHHHHhhhcCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT--LKGREQE---WNISR-KELLELVESGILVEDDIDEATATKFNPN  182 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~--~~~~~~~---~~is~-~~l~~L~~lGl~~~~~~~~~~~~~~~~~  182 (535)
                      +||||||| |++|+++|+.|++.|.+|+|||+..  ++.....   ..+.. ...+.+..+|-.-....+. ....|.  
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~-~gi~f~--  103 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQ-TGIQFK--  103 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHH-HEEEEE--
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhh-ccccee--
Confidence            59999999 9999999999999999999999973  3221110   11111 2223333333211111111 000110  


Q ss_pred             cccccccCcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCC
Q 009427          183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      ... ...+...  ......+|+..+.+.+.+.+.+ .|++++ +++|+++..+++.+. |.+.+|.++.|+.||+|+|.+
T Consensus       104 ~l~-~~kGpav--~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          104 MLN-TRKGKAV--QSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTF  179 (637)
T ss_dssp             EES-TTSCGGG--CEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred             ecc-cccCccc--cchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCC
Confidence            000 0011100  1112346788888999998887 488885 679999987776653 677788889999999999987


Q ss_pred             h
Q 009427          261 S  261 (535)
Q Consensus       261 S  261 (535)
                      +
T Consensus       180 s  180 (637)
T 2zxi_A          180 L  180 (637)
T ss_dssp             B
T ss_pred             c
Confidence            5

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.07  E-value=5.6e-10  Score=120.58  Aligned_cols=56  Identities=20%  Similarity=0.233  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEE-EEEc-CCe--EEEcC-eEEEccCCCh
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAV-LLLA-EGK--ILSSH-LIIDAMGNFS  261 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~gv~-v~~~-~G~--~i~a~-lVV~AdG~~S  261 (535)
                      .+.+.|.+.+++.|++++++++|+++..++ +.++ |.+. +++  +++|+ .||+|+|.++
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            788999999999999999999999998873 4332 3332 342  58995 9999999987

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.06  E-value=9.9e-10  Score=111.56  Aligned_cols=128  Identities=16%  Similarity=0.223  Sum_probs=87.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCc-cccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNR-CGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~-~~~~  187 (535)
                      ++||+||| |++|+++|+.|+++|++|+|||+....++  .|...      ..  ++           ..+.+.. ..+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg--~~~~~------~~--~~-----------~~~~~~~~~~~~   61 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG--AWQHA------WH--SL-----------HLFSPAGWSSIP   61 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSG--GGGGS------CT--TC-----------BCSSCGGGSCCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC--cccCC------CC--Cc-----------EecCchhhhhCC
Confidence            58999999 99999999999999999999999853332  12100      00  00           0000100 0000


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChH
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                        +... ........++..+.+.+.+.+.+.|++++.+++|+++..+++.+. |++.+| ++.+|.||+|+|.+|.
T Consensus        62 --~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A           62 --GWPM-PASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGE  133 (357)
T ss_dssp             --SSCC-CCCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGG
T ss_pred             --CCCC-CCCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCC
Confidence              0000 000011134567788888888889999999999999998888888 888766 8999999999998763

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.05  E-value=1.5e-09  Score=108.67  Aligned_cols=111  Identities=18%  Similarity=0.248  Sum_probs=83.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      |||+||| |++|+++|+.|++.|+ +|+|||+...++..   ...          ...          ..+ +.      
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~---~~~----------~~~----------~~~-~~------   51 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQI---TGS----------SEI----------ENY-PG------   51 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGG---GGC----------SCB----------CCS-TT------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCccc---ccc----------ccc----------ccC-CC------
Confidence            7999999 9999999999999999 99999997433210   000          000          000 00      


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                          +     ...+++..+.+.+.+.+.+.|++++. ++|+++..+++.+.+.+.+|+++++|.||+|+|..+
T Consensus        52 ----~-----~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~  114 (311)
T 2q0l_A           52 ----V-----KEVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSP  114 (311)
T ss_dssp             ----C-----CSCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             ----C-----cccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCC
Confidence                0     01245677778888888888999987 789999888887888777888899999999999765

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.04  E-value=1.2e-09  Score=109.46  Aligned_cols=110  Identities=17%  Similarity=0.194  Sum_probs=76.0

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      +.|||+||| ||+|+++|+.|+|+|++|+|||++..++.                  + .         ..+ ++..   
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~------------------~-~---------~~~-~~~~---   52 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNR------------------V-T---------QNS-HGFI---   52 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGG------------------G-S---------SCB-CCST---
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCe------------------e-e---------eec-CCcc---
Confidence            379999999 99999999999999999999999753321                  0 0         001 0000   


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      .          .-.+.+..+.+...+.+.+.+...+....++.+...+ +...+.+.+|+++++|.||+|+|+.
T Consensus        53 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~  116 (304)
T 4fk1_A           53 T----------RDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQ  116 (304)
T ss_dssp             T----------CTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCE
T ss_pred             C----------CCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCc
Confidence            0          0123455666666777777766555556666665544 3467778888999999999999964

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.02  E-value=4.5e-09  Score=115.03  Aligned_cols=67  Identities=13%  Similarity=0.143  Sum_probs=54.2

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEc---CC--eEEEcCeEEEccCCChHHHHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~---~G--~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      ..+++.++...+.+.+.+.|++++.+++|+++..+++.+. |.+.   +|  .+++|+.||.|+|.++.-...
T Consensus       183 g~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~  255 (571)
T 2rgh_A          183 FRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRN  255 (571)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHT
T ss_pred             CeEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHH
Confidence            3478899999999999999999999999999988776542 4432   34  379999999999999865544

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.02  E-value=2.5e-09  Score=108.23  Aligned_cols=129  Identities=22%  Similarity=0.361  Sum_probs=81.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCccccc---------ccHHHHHHHHHcCCCChHhHHHHHhh
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWN---------ISRKELLELVESGILVEDDIDEATAT  177 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~---------is~~~l~~L~~lGl~~~~~~~~~~~~  177 (535)
                      ++||+||| |++|+++|+.|+++  |++|+|+|+....+.. .|.         +.....+.|.+.|+            
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg-~~~~g~~~~~~~~~~~~~~~L~~~Gv------------  131 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG-SWLGGQLFSAMVMRKPAHLFLQELEI------------  131 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT-TTCCGGGCCCEEEETTTHHHHHHTTC------------
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccc-ccccCcccchhhhhhHHHHHHHhhCc------------
Confidence            58999999 99999999999999  9999999998654421 121         00001111111121            


Q ss_pred             hcCCCcccccccCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeC--C----e---EEEEE----c
Q 009427          178 KFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYE--N----A---AVLLL----A  243 (535)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~--~----g---v~v~~----~  243 (535)
                      .+.       ..+..+      ...+...+.+.|.+++.+. |++++.+++|+++..++  +    .   +++..    .
T Consensus       132 ~~~-------~~g~~~------~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~  198 (326)
T 2gjc_A          132 PYE-------DEGDYV------VVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQ  198 (326)
T ss_dssp             CCE-------ECSSEE------EESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHT
T ss_pred             ccc-------cCCCeE------EEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecc
Confidence            010       011111      1124567788899988885 89999999999998763  2    2   22221    1


Q ss_pred             --------CCeEEEc---------------CeEEEccCCChHHH
Q 009427          244 --------EGKILSS---------------HLIIDAMGNFSPVV  264 (535)
Q Consensus       244 --------~G~~i~a---------------~lVV~AdG~~S~v~  264 (535)
                              ++.++.|               ++||+|+|+.+++.
T Consensus       199 ~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~  242 (326)
T 2gjc_A          199 AHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFG  242 (326)
T ss_dssp             C---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CC
T ss_pred             cccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHH
Confidence                    2356899               99999999877553

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.02  E-value=1.8e-09  Score=110.62  Aligned_cols=116  Identities=18%  Similarity=0.256  Sum_probs=84.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++||+||| |++|+++|+.|++.|++|+|||+....++        . ...                  .+ |....+..
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg--------~-~~~------------------~~-~~~~~~~~   65 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGG--------Q-LAA------------------LY-PEKHIYDV   65 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH--------H-HHH------------------TC-TTSEECCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCC--------c-ccc------------------cC-CCcccccC
Confidence            58999999 99999999999999999999999743221        0 000                  00 11000000


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      ..  +      ..+++..+.+.+.+.+.+.+++++.+++|+++..+++ .+.|.+.+|.++.+|.||+|+|..|
T Consensus        66 ~~--~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           66 AG--F------PEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             TT--C------SSEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred             CC--C------CCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence            00  0      0134567778888888888999999999999987655 6778887888899999999999865

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.01  E-value=2.1e-09  Score=108.79  Aligned_cols=116  Identities=18%  Similarity=0.300  Sum_probs=84.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .+||+||| |++|+++|+.|+++|++|+|||+....++        .    +.               ..+ |....+..
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg--------~----~~---------------~~~-~~~~~~~~   56 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGG--------Q----LT---------------ALY-PEKYIYDV   56 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCH--------H----HH---------------HTC-TTSEECCS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC--------e----ee---------------ccC-CCceeecc
Confidence            58999999 99999999999999999999999743221        0    00               001 11000000


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      ..  +      ..++...+.+.+.+.+.+.+++++.+++|+++..+++.+.|.+.+|.++.+|.||+|+|..+
T Consensus        57 ~~--~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~  121 (335)
T 2zbw_A           57 AG--F------PKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGA  121 (335)
T ss_dssp             TT--C------SSEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSE
T ss_pred             CC--C------CCCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCC
Confidence            00  0      01345667778888888889999999999999887777888887787899999999999864

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.96  E-value=1.4e-08  Score=111.83  Aligned_cols=151  Identities=18%  Similarity=0.230  Sum_probs=89.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---c----c------cHH-HHHHHHHc--CCCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---N----I------SRK-ELLELVES--GILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~----i------s~~-~l~~L~~l--Gl~~~~~~~  172 (535)
                      ++|||||| |++|+++|+.|+++|.+|+||||....+....+   .    .      +.. .+......  ++.+.+.++
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v~   97 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIH   97 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            58999999 999999999999999999999998643322110   0    0      111 11221111  232332221


Q ss_pred             HHH-------h--hhcCCCcccccc--cCcce-------eee--------ccccc--cCHHHHHHHHHHHHHhCCCEEEe
Q 009427          173 EAT-------A--TKFNPNRCGFEG--KGEIW-------VED--------ILNLG--VSPAKLIEIVKKRFISLGGVIFE  224 (535)
Q Consensus       173 ~~~-------~--~~~~~~~~~~~~--~~~~~-------~~~--------~~~~~--v~~~~l~~~L~~~a~~~G~~i~~  224 (535)
                      ...       .  ..+.   +.|..  .+..+       ...        +..+.  .....++..|.+++.+.|+++++
T Consensus        98 ~l~~~s~~~i~~L~~~G---v~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~i~~  174 (621)
T 2h88_A           98 YMTEQAPAAVIELENYG---MPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFV  174 (621)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCEEEE
T ss_pred             HHHHHHHHHHHHHHHcC---CCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCEEEE
Confidence            111       0  0110   11110  00000       000        00000  12357889999999889999999


Q ss_pred             CceEEEEEEeCCeE---EEEE-cCCe--EEEcCeEEEccCCChHH
Q 009427          225 GYSVSSICTYENAA---VLLL-AEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       225 ~~~V~~i~~~~~gv---~v~~-~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      ++.|+++..+++.+   ++.. .+|+  .+.|+.||+|+|.++.+
T Consensus       175 ~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          175 EYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             TEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             ceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            99999998776643   2322 3564  68999999999999865

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.96  E-value=3.8e-09  Score=106.61  Aligned_cols=112  Identities=17%  Similarity=0.217  Sum_probs=80.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .+||+||| |++|+++|+.|++.|++|+|||+...++.   +...          +.+          ..+ +.      
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~~----------~~~----------~~~-~~------   57 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQ---IAWS----------EEV----------ENF-PG------   57 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGG---GGGC----------SCB----------CCS-TT------
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcc---cccc----------ccc----------ccC-CC------
Confidence            58999999 99999999999999999999999843221   0000          000          000 00      


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe--CCe-EEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY--ENA-AVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~--~~g-v~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                          +     ...++...+.+.+.+.+.+.|++++. ++|+++..+  ++. +.|.+.+|.++.+|.||+|+|..+
T Consensus        58 ----~-----~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           58 ----F-----PEPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADP  123 (325)
T ss_dssp             ----C-----SSCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEE
T ss_pred             ----C-----CCCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence                0     01234567778888888889999887 689998766  443 666666788899999999999754

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.95  E-value=4.3e-09  Score=105.35  Aligned_cols=110  Identities=16%  Similarity=0.206  Sum_probs=81.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++||+||| |++|+++|+.|+++|++|+|||+. .++.   |..          .+            ..+.     +  
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~gg~---~~~----------~~------------~~~~-----~--   61 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET-PGGQ---LTE----------AG------------IVDD-----Y--   61 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-TTGG---GGG----------CC------------EECC-----S--
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc-CCCe---ecc----------cc------------cccc-----c--
Confidence            58999999 999999999999999999999998 3221   100          00            0000     0  


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      ..      .  ..+....+.+.+.+.+.+.|++++. ++|+++..+++.+.+.+.+|.++.+|.||.|+|...
T Consensus        62 ~~------~--~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           62 LG------L--IEIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKR  125 (323)
T ss_dssp             TT------S--TTEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEE
T ss_pred             CC------C--CCCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCC
Confidence            00      0  0133566778888888888999888 899999887778888888878999999999999763

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.95  E-value=1.4e-08  Score=111.83  Aligned_cols=153  Identities=14%  Similarity=0.170  Sum_probs=90.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCcccc---c----c----cH-HHH-HHHHHc-CCCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEW---N----I----SR-KEL-LELVES-GILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~---~----i----s~-~~l-~~L~~l-Gl~~~~~~~  172 (535)
                      ++|||||| |++|+++|+.|+++|  .+|+||||....+....+   .    .    +. ..+ +.+... ++.+.+.++
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~   84 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVD   84 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            58999999 999999999999999  999999998543221111   1    0    11 111 122111 222222221


Q ss_pred             HHH-------h--hhcCCCcccccc--cCcc-------eeeeccccc--cCHHHHHHHHHHHHHhCC-CEEEeCceEEEE
Q 009427          173 EAT-------A--TKFNPNRCGFEG--KGEI-------WVEDILNLG--VSPAKLIEIVKKRFISLG-GVIFEGYSVSSI  231 (535)
Q Consensus       173 ~~~-------~--~~~~~~~~~~~~--~~~~-------~~~~~~~~~--v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i  231 (535)
                      ...       .  ..+.   +.|..  .+..       +...+..+.  .....+.+.|.+.+.+.| +++++++.|+++
T Consensus        85 ~~~~~~~~~i~~L~~~G---v~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l  161 (602)
T 1kf6_A           85 YFVHHCPTEMTQLELWG---CPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDI  161 (602)
T ss_dssp             HHHHHHHHHHHHHHHTT---CCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcC---CCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEE
Confidence            111       0  0110   11110  0000       000000000  113578889999998888 899999999999


Q ss_pred             EEeCCeE---EEE-EcCCe--EEEcCeEEEccCCChHHHH
Q 009427          232 CTYENAA---VLL-LAEGK--ILSSHLIIDAMGNFSPVVK  265 (535)
Q Consensus       232 ~~~~~gv---~v~-~~~G~--~i~a~lVV~AdG~~S~v~~  265 (535)
                      ..+++.+   .+. +.+|+  ++.|+.||+|+|.+|.+..
T Consensus       162 ~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~  201 (602)
T 1kf6_A          162 LVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYR  201 (602)
T ss_dssp             EEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSS
T ss_pred             EEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCccccc
Confidence            8877643   232 24675  6999999999999997754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.94  E-value=5.6e-09  Score=105.08  Aligned_cols=111  Identities=17%  Similarity=0.268  Sum_probs=80.8

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .++||+||| |++|+++|+.|+++|++|+|||+...++....   .          ..+          ..+ +.     
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~---~----------~~~----------~~~-~~-----   65 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAE---A----------PLV----------ENY-LG-----   65 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGG---C----------SCB----------CCB-TT-----
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccc---c----------chh----------hhc-CC-----
Confidence            369999999 99999999999999999999999643321000   0          000          000 00     


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                           +      ..++...+.+.+.+.+.+.|++++. ++|+++..+++.+.|.+ ++.++.+|.||+|+|..+
T Consensus        66 -----~------~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~  126 (319)
T 3cty_A           66 -----F------KSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTH  126 (319)
T ss_dssp             -----B------SSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEE
T ss_pred             -----C------cccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCc
Confidence                 0      1234556777788888888999887 78999988777777777 666899999999999754

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.93  E-value=6.8e-09  Score=102.71  Aligned_cols=109  Identities=19%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++||+||| |++|+++|..|+++|++|+|+|+....+..  +             ..          ...|.        
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~--~-------------~~----------~~~~~--------   48 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRF--A-------------SH----------SHGFL--------   48 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGG--C-------------SC----------CCSST--------
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccccc--c-------------hh----------hcCCc--------
Confidence            48999999 999999999999999999999987421110  0             00          00000        


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                       .        ....+...+.+.+.+.+.+. +++++ +++|+++..+++++.+.+.+|+++.+|.||+|+|..+
T Consensus        49 -~--------~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~  112 (297)
T 3fbs_A           49 -G--------QDGKAPGEIIAEARRQIERYPTIHWV-EGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD  112 (297)
T ss_dssp             -T--------CTTCCHHHHHHHHHHHHTTCTTEEEE-ESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEE
T ss_pred             -C--------CCCCCHHHHHHHHHHHHHhcCCeEEE-EeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCC
Confidence             0        01234566777888888777 45655 4599999888888889998888899999999999864

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.93  E-value=2.3e-08  Score=109.43  Aligned_cols=154  Identities=14%  Similarity=0.146  Sum_probs=88.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc------------------cc-HHHHHHHHHcCC--CC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN------------------IS-RKELLELVESGI--LV  167 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~------------------is-~~~l~~L~~lGl--~~  167 (535)
                      ++||+||| |++|+++|+.|+++|++|+|+|+....+....+.                  .+ ...++.+.+.|.  .+
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            68999999 9999999999999999999999986443221100                  01 111222222221  11


Q ss_pred             hHhHHHHHh-----hhc-CCCcccccc----cCcce--eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC
Q 009427          168 EDDIDEATA-----TKF-NPNRCGFEG----KGEIW--VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE  235 (535)
Q Consensus       168 ~~~~~~~~~-----~~~-~~~~~~~~~----~~~~~--~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~  235 (535)
                      .+.++....     ..| ....+.|..    .+..+  .............+.+.|.+.+.+.|++++++++|+++..++
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~  285 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA  285 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence            211111100     000 000000100    00000  000001112356788999999999999999999999997765


Q ss_pred             -Ce---EEEEEcCCe--EEEcCeEEEccCCChHH
Q 009427          236 -NA---AVLLLAEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       236 -~g---v~v~~~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                       +.   +++...+|+  ++.|+.||+|+|.++..
T Consensus       286 ~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~  319 (572)
T 1d4d_A          286 SGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKN  319 (572)
T ss_dssp             -CCEEEEEEEETTTEEEEEECSEEEECCCCCTTC
T ss_pred             CCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccC
Confidence             43   333333564  68999999999998854

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.92  E-value=1.4e-08  Score=111.50  Aligned_cols=154  Identities=16%  Similarity=0.220  Sum_probs=88.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc-------cc------cHH-HHHHHHHc--CCCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW-------NI------SRK-ELLELVES--GILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~-------~i------s~~-~l~~L~~l--Gl~~~~~~~  172 (535)
                      ++|||||| |++|+++|+.|+++|.+|+||||....+....+       ..      +.. .+......  ++.+.+.++
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~   86 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE   86 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            58999999 999999999999999999999998654321110       01      111 12222221  232322222


Q ss_pred             HHHh------hhcCCCcccccc--cCcce-------e-------eeccccc--cCHHHHHHHHHHHHHhCCCEEEeCceE
Q 009427          173 EATA------TKFNPNRCGFEG--KGEIW-------V-------EDILNLG--VSPAKLIEIVKKRFISLGGVIFEGYSV  228 (535)
Q Consensus       173 ~~~~------~~~~~~~~~~~~--~~~~~-------~-------~~~~~~~--v~~~~l~~~L~~~a~~~G~~i~~~~~V  228 (535)
                      ....      ..+....+.|..  .+..+       .       ..+..+.  .....+.+.|.+++.+.|++++++++|
T Consensus        87 ~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v  166 (588)
T 2wdq_A           87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA  166 (588)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCEEEETEEE
T ss_pred             HHHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCEEEeCcEE
Confidence            1110      000000011110  00000       0       0000000  113578889999999999999999999


Q ss_pred             EEEEEe-CCeE---EEEE-cCCe--EEEcCeEEEccCCChHH
Q 009427          229 SSICTY-ENAA---VLLL-AEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       229 ~~i~~~-~~gv---~v~~-~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      +++..+ ++.+   .+.. .+|+  ++.|+.||+|+|.++..
T Consensus       167 ~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~  208 (588)
T 2wdq_A          167 LDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_dssp             EEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             EEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccc
Confidence            999875 4433   2222 3554  68999999999998864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.92  E-value=8.5e-09  Score=105.65  Aligned_cols=136  Identities=18%  Similarity=0.172  Sum_probs=83.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      ++||+||| |++|+++|..|++.|+ +|+|||+..+++.   |......      ..++....    ....|.-  ..+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~---~~~~~~~------~~~~~~~~----~~~~~g~--~~~~   68 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHS---FKHWPKS------TRTITPSF----TSNGFGM--PDMN   68 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHH---HHTSCTT------CBCSSCCC----CCGGGTC--CCTT
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCc---cccCccc------ccccCcch----hcccCCc--hhhh
Confidence            58999999 9999999999999999 9999999862211   1000000      00000000    0000000  0000


Q ss_pred             ccCcceee--eccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIWVE--DILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~~~--~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      ........  ......+++..+.+.+.+.+.+.|++++.+++|+++..+++++.|.+.++ ++.+|.||+|+|.++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           69 AISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYN  143 (369)
T ss_dssp             CSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTT
T ss_pred             hccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCC
Confidence            00000000  00011234566777788888888999999999999987766788887666 689999999999875

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.91  E-value=3e-09  Score=107.53  Aligned_cols=117  Identities=16%  Similarity=0.150  Sum_probs=80.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .+||+||| |++|+++|+.|++.|++|+|||+...... ...             |.+.           +. ....   
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~-~~g-------------g~~~-----------~~-~~~~---   58 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDI-APG-------------GQLT-----------TT-TDVE---   58 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTB-CTT-------------CGGG-----------GC-SEEC---
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCcccc-CCC-------------ceee-----------ec-cccc---
Confidence            58999999 99999999999999999999998210000 000             0000           00 0000   


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChH
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                      ....+     ...++...+.+.+.+.+.+.|++++.++ |+++..+++.++|.+ +|.++++|.||+|+|.++.
T Consensus        59 ~~~~~-----~~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~  125 (333)
T 1vdc_A           59 NFPGF-----PEGILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAK  125 (333)
T ss_dssp             CSTTC-----TTCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEEC
T ss_pred             cCCCC-----ccCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcC
Confidence            00000     1123456777888888888999999886 888876666777877 7888999999999998753

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.90  E-value=1.4e-08  Score=110.35  Aligned_cols=134  Identities=18%  Similarity=0.201  Sum_probs=83.4

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCC-CChHhHHHHHhhhcCCCcccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGI-LVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl-~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      .++||+||| |++|+++|+.|++.|++|+|||+....++  .|...     ..  -|+ .+.   .   ...|.   ..|
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG--~w~~~-----~~--pg~~~d~---~---~~~~~---~~f   76 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG--VWYWN-----RY--PGARCDI---E---SIEYC---YSF   76 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHC-----CC--TTCBCSS---C---TTTSS---CCS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCC--ccccc-----CC--Cceeecc---c---ccccc---ccc
Confidence            369999999 99999999999999999999999853332  11000     00  010 000   0   00000   000


Q ss_pred             cccCcce-eeeccccccCHHHHHHHHHHHHHhCC--CEEEeCceEEEEEEeCC--eEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          187 EGKGEIW-VEDILNLGVSPAKLIEIVKKRFISLG--GVIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       187 ~~~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~G--~~i~~~~~V~~i~~~~~--gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      .  .... .......-.+...+.+.+.+.+.+.+  ..++.+++|+++..+++  .+.|++++|++++||.||+|+|.+|
T Consensus        77 ~--~~~~~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s  154 (542)
T 1w4x_A           77 S--EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS  154 (542)
T ss_dssp             C--HHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             C--hhhhhccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCC
Confidence            0  0000 00000011245566677766666665  57889999999987654  6788888888899999999999876


Q ss_pred             H
Q 009427          262 P  262 (535)
Q Consensus       262 ~  262 (535)
                      .
T Consensus       155 ~  155 (542)
T 1w4x_A          155 V  155 (542)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.90  E-value=9e-09  Score=103.54  Aligned_cols=114  Identities=21%  Similarity=0.301  Sum_probs=82.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .+||+||| |++|+++|+.|+++|++|+|||+....++         .+..                  .+..... +..
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG---------~~~~------------------~~~~~~~-~~~   58 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGG---------QLSA------------------LYPEKYI-YDV   58 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCH---------HHHH------------------HCTTSEE-CCS
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCc---------eehh------------------cCCCceE-ecc
Confidence            58999999 99999999999999999999999843221         0000                  0110000 000


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCeEEEcCeEEEccCCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      .+  +      ..+....+...+.+.+.+.|++++.+++|+++..+++ .+.|.+.+|+ +.+|.||.|+|..
T Consensus        59 ~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~  122 (332)
T 3lzw_A           59 AG--F------PKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNG  122 (332)
T ss_dssp             TT--C------SSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTS
T ss_pred             CC--C------CCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCC
Confidence            00  0      0134567778888888888999999999999987766 6788886665 9999999999984

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.90  E-value=9.1e-09  Score=111.81  Aligned_cols=133  Identities=18%  Similarity=0.285  Sum_probs=85.7

Q ss_pred             cccEEEEc-chHHHHHHHHHH-HCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALS-FKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LA-r~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      ++||+||| |++|+++|+.|+ +.|++|+|||+....++  .|...     ..  -|+..  .+.   ...|...   + 
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GG--tw~~~-----~y--pg~~~--d~~---s~~~~~~---~-   69 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG--TWYWN-----RY--PGALS--DTE---SHLYRFS---F-   69 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCT--HHHHC-----CC--TTCEE--EEE---GGGSSCC---S-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCC--ccccc-----CC--CCcee--cCC---cceeeec---c-
Confidence            58999999 999999999999 99999999999743322  11000     00  01000  000   0000000   0 


Q ss_pred             ccCcce-eeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC--eEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIW-VEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~~--gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                       ....+ .........+...+.+.+.+.+.+.|+  .++.+++|+++..+++  .++|++++|++++||.||+|+|.+|
T Consensus        70 -~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s  147 (540)
T 3gwf_A           70 -DRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLS  147 (540)
T ss_dssp             -CHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCC
T ss_pred             -ccccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccc
Confidence             00000 000001123456777888888888887  7899999999988766  6888888888899999999999865

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.89  E-value=8.1e-09  Score=103.35  Aligned_cols=117  Identities=19%  Similarity=0.185  Sum_probs=78.9

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      +.|||+||| ||+|+++|+.|+++|++|+|+|+...++....              |.+.            ....+ . 
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~--------------G~~~------------~~~~i-~-   54 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAG--------------GQLT------------TTTII-E-   54 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTT--------------CGGG------------GSSEE-C-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccC--------------CCcC------------ChHHh-h-
Confidence            369999999 99999999999999999999999854332100              1100            00000 0 


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                       .-..+     ...++...+...+.+.+.+.+.++... .+.......+...+.+.++.++.++.||.|+|+.
T Consensus        55 -~~~g~-----~~~i~~~~l~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~  120 (314)
T 4a5l_A           55 -NFPGF-----PNGIDGNELMMNMRTQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGAT  120 (314)
T ss_dssp             -CSTTC-----TTCEEHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEE
T ss_pred             -hccCC-----cccCCHHHHHHHHHHHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEccccc
Confidence             00000     112345667777888888888887754 4666555556666777778899999999999964

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.89  E-value=1.1e-08  Score=104.26  Aligned_cols=131  Identities=18%  Similarity=0.174  Sum_probs=78.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHH---CCCcEEEEcccCCCCCc-ccc----------c-------ccH-------HHHHHHH
Q 009427          111 FDVIVCG-GTLGIFIATALSF---KGLRVAIVERNTLKGRE-QEW----------N-------ISR-------KELLELV  161 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr---~G~~V~liEr~~~~~~~-~~~----------~-------is~-------~~l~~L~  161 (535)
                      +||+||| |++|+++|+.|++   .|++|+|+||....++. ...          +       ...       ..++.+.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL   81 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence            6999999 9999999999999   99999999998532210 000          0       000       0011111


Q ss_pred             HcCCCChHhHHHHHhhhcCCCcccccc-cC-cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE
Q 009427          162 ESGILVEDDIDEATATKFNPNRCGFEG-KG-EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV  239 (535)
Q Consensus       162 ~lGl~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~  239 (535)
                      ..|+          ...+......... .. ..+.. ..    ....+.+.+.+++   |++|+.+++|++|+.++++++
T Consensus        82 ~~g~----------~~~~~~~~~~~~~~~~~~~~~~-~~----g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~~~~~~  143 (342)
T 3qj4_A           82 AYGV----------LRPLSSPIEGMVMKEGDCNFVA-PQ----GISSIIKHYLKES---GAEVYFRHRVTQINLRDDKWE  143 (342)
T ss_dssp             HTTS----------CEECCSCEETCCC--CCEEEEC-TT----CTTHHHHHHHHHH---TCEEESSCCEEEEEECSSSEE
T ss_pred             hCCC----------eecCchhhcceeccCCccceec-CC----CHHHHHHHHHHhc---CCEEEeCCEEEEEEEcCCEEE
Confidence            1111          0111111000000 00 01111 10    1123444454443   899999999999998888899


Q ss_pred             EEEcCCeEEEcCeEEEccCC
Q 009427          240 LLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       240 v~~~~G~~i~a~lVV~AdG~  259 (535)
                      |++.+|+++++|.||.|+..
T Consensus       144 v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          144 VSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             EEESSSCCEEESEEEECSCH
T ss_pred             EEECCCCEEEcCEEEECCCH
Confidence            99888877899999999874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.89  E-value=6.4e-09  Score=104.93  Aligned_cols=117  Identities=19%  Similarity=0.211  Sum_probs=82.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .+||+||| |++|+++|+.|+++|++|+|||+.+.... ...             |.+.           +......+  
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~-~~g-------------g~~~-----------~~~~~~~~--   74 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGI-AAG-------------GQLT-----------TTTEIENF--   74 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTB-CTT-------------CGGG-----------GSSEECCS--
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCC-CcC-------------cccc-----------cchhhccc--
Confidence            69999999 99999999999999999999999641110 000             1100           00000000  


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G~~i~a~lVV~AdG~~S  261 (535)
                      .+       ....+....+.+.+.+.+.+.|++++.++ |+++..+++.+.+.+.   ++.++.+|.||+|+|..+
T Consensus        75 ~~-------~~~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           75 PG-------FPDGLTGSELMDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             TT-------CTTCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEE
T ss_pred             CC-------CcccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCc
Confidence            00       01113456777888888989999999988 9999877777887773   567899999999999754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.88  E-value=9e-09  Score=104.44  Aligned_cols=112  Identities=20%  Similarity=0.245  Sum_probs=80.0

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      ..+||+||| |++|+++|+.|++.|++|+|||+...++.   +.                           +......+ 
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~---------------------------~~~~~~~~-   61 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGA---LM---------------------------TTTDVENY-   61 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCG---GG---------------------------SCSCBCCS-
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCc---ee---------------------------ccchhhhc-
Confidence            369999999 99999999999999999999997633221   00                           00000000 


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE-EEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL-LLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v-~~~~G~~i~a~lVV~AdG~~S  261 (535)
                       .  .     ....++...+.+.+.+.+.+.|++++.++ |+++.. ++.+.| .+.+|.++.+|.||+|+|..+
T Consensus        62 -~--~-----~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~  126 (335)
T 2a87_A           62 -P--G-----FRNGITGPELMDEMREQALRFGADLRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAMGAAA  126 (335)
T ss_dssp             -T--T-----CTTCBCHHHHHHHHHHHHHHTTCEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             -C--C-----CCCCCCHHHHHHHHHHHHHHcCCEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCc
Confidence             0  0     01124556677788888888899999886 888865 555666 677788899999999999754

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.88  E-value=5.4e-09  Score=113.60  Aligned_cols=153  Identities=12%  Similarity=0.154  Sum_probs=80.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c----c-HHH----HHHHHHc--CCCChHhHHHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I----S-RKE----LLELVES--GILVEDDIDEA  174 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i----s-~~~----l~~L~~l--Gl~~~~~~~~~  174 (535)
                      ++|||||| |++|+++|+.|++ |.+|+||||....+....+.   +    . ...    ++.....  |+.+.+.++..
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~ds~~~~~~d~l~~g~g~~d~~~v~~~   86 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFV   86 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC-------------CCSHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCChhhcCCCEEEecCCCCCHHHHHHHHHHhhcccCCHHHHHHH
Confidence            68999999 9999999999999 99999999987544322111   1    0 111    1111111  23333222211


Q ss_pred             Hh------hhcCCCcccccc------cCc-------ceeeecc-c-cccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEE
Q 009427          175 TA------TKFNPNRCGFEG------KGE-------IWVEDIL-N-LGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSIC  232 (535)
Q Consensus       175 ~~------~~~~~~~~~~~~------~~~-------~~~~~~~-~-~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~  232 (535)
                      ..      ..+....+.|..      .+.       .+...+. . .......+.+.|.+++.+ .|+++++++.|+++.
T Consensus        87 ~~~~~~~i~~l~~~Gv~f~~~~~~~~~g~~~~~~~gg~~~~r~~~~~d~~g~~l~~~L~~~~~~~~gv~i~~~~~v~~L~  166 (540)
T 1chu_A           87 ASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERTNAVDLI  166 (540)
T ss_dssp             HHHHHHHHHHHHHTTCC--------------------------------------CCCHHHHHHCTTEEEECSEEEEEEE
T ss_pred             HHhHHHHHHHHHHcCCCcccCcccCcCCccccccccccccCeEEEeCCCCHHHHHHHHHHHHHcCCCCEEEeCcEEEEEE
Confidence            00      000000011100      000       0000000 0 001234567778888888 699999999999998


Q ss_pred             E-eCC------eEE-EEE---cCCe--EEEcCeEEEccCCChHH
Q 009427          233 T-YEN------AAV-LLL---AEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       233 ~-~~~------gv~-v~~---~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      . +++      .+. |.+   .+|+  ++.|+.||+|+|.++.+
T Consensus       167 ~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~  210 (540)
T 1chu_A          167 VSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKV  210 (540)
T ss_dssp             EGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGG
T ss_pred             EcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence            7 334      332 333   2564  69999999999999865

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.87  E-value=4.7e-09  Score=111.25  Aligned_cols=145  Identities=15%  Similarity=0.107  Sum_probs=85.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC--cEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHh------HHH------H
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDD------IDE------A  174 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~------~~~------~  174 (535)
                      .+||+||| |++|+++|..|++.|.  +|+|+|+....++  .|......-.   ..++.....      +..      .
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG--~~~~~~~~~~---~~~ip~~~~~~~~~~~~~g~~~~~~   80 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG--VWNYTSTLSN---KLPVPSTNPILTTEPIVGPAALPVY   80 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSST--TCSCCSCCCS---CCCSSBCCTTCCCCCBCCSSSCCBC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCC--eecCCCCCCc---ccccccccccccccccccccccCCc
Confidence            58999999 9999999999999999  9999999843222  1211100000   000000000      000      0


Q ss_pred             HhhhcCCCc-------ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---
Q 009427          175 TATKFNPNR-------CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---  244 (535)
Q Consensus       175 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~---  244 (535)
                      ....|..-.       ..|.  ...+ ......-.++..+.+.+.+.+.+.+..++.+++|+++..+++++.|++.+   
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~  157 (447)
T 2gv8_A           81 PSPLYRDLQTNTPIELMGYC--DQSF-KPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKA  157 (447)
T ss_dssp             CCCCCTTCBCSSCHHHHSCT--TCCC-CTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESST
T ss_pred             cCchhhhhccCCCHHHhccC--CCCC-CCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCC
Confidence            000000000       0000  0000 00001113466777888887777777888999999998888888888765   


Q ss_pred             Ce---EEEcCeEEEccCCChH
Q 009427          245 GK---ILSSHLIIDAMGNFSP  262 (535)
Q Consensus       245 G~---~i~a~lVV~AdG~~S~  262 (535)
                      |+   ++.+|.||+|+|++|.
T Consensus       158 G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          158 GSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             TCCEEEEEESEEEECCCSSSS
T ss_pred             CCeeEEEEeCEEEECCCCCCC
Confidence            65   7999999999999763

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.87  E-value=1.6e-08  Score=112.19  Aligned_cols=60  Identities=13%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE---EEEE-cCCe--EEEcCeEEEccCCChHH
Q 009427          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA---VLLL-AEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       204 ~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv---~v~~-~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      ...+...|.+.+.+.|+++++++.|+++..+++.+   ++.. .+|+  .+.|+.||+|+|.++..
T Consensus       157 G~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          157 GHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchhh
Confidence            35788899999988899999999999998776633   3322 4564  58999999999999854

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.87  E-value=1.8e-08  Score=109.76  Aligned_cols=133  Identities=19%  Similarity=0.267  Sum_probs=85.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++|||||| |++|+++|+.|++.|++|+|||++...++  .|...     ..  -|+..  .+.   ...|...   |  
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG--tw~~~-----~y--pg~~~--dv~---s~~y~~~---f--   81 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG--VWYWN-----RY--PGARC--DVE---SIDYSYS---F--   81 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHC-----CC--TTCBC--SSC---TTTSSCC---S--
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCC--ccccC-----CC--CCcee--CCC---chhcccc---c--
Confidence            68999999 99999999999999999999999743222  11000     00  01100  000   0001000   0  


Q ss_pred             cCcce-eeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC--eEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIW-VEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~-~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~~--gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      ....+ ..+......+...+.+.+.+.+.+.|+  .++.+++|+++..+++  .++|++++|++++||.||.|+|..|
T Consensus        82 ~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s  159 (549)
T 4ap3_A           82 SPELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLS  159 (549)
T ss_dssp             CHHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEE
T ss_pred             ccccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCC
Confidence            00000 000001123456777888888888887  7899999999987765  6788888888899999999999755

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.84  E-value=9.1e-09  Score=103.28  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=79.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .+||+||| |++|+++|+.|++.|++|+|+|+...++.   +..              .         .... .   +  
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~---~~~--------------~---------~~~~-~---~--   52 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQ---LTT--------------T---------TEVE-N---W--   52 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGG---GGG--------------C---------SBCC-C---S--
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCce---Eec--------------c---------hhhh-h---C--
Confidence            58999999 99999999999999999999997633221   000              0         0000 0   0  


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                        ..+     ...++...+.+.+.+.+.+.|++++.++ |+.+..+++.+.+ +.++.++.+|.||+|+|..+
T Consensus        53 --~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           53 --PGD-----PNDLTGPLLMERMHEHATKFETEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGASA  116 (320)
T ss_dssp             --TTC-----CSSCBHHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCEEE
T ss_pred             --CCC-----CCCCCHHHHHHHHHHHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCCCc
Confidence              000     0113455667778888888899999886 8888766666777 55778899999999999754

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.83  E-value=4e-08  Score=105.00  Aligned_cols=148  Identities=16%  Similarity=0.208  Sum_probs=85.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc-------c----cH-HHHHH-HHH-cCCCChHhHHHHH-
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-------I----SR-KELLE-LVE-SGILVEDDIDEAT-  175 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~-------i----s~-~~l~~-L~~-lGl~~~~~~~~~~-  175 (535)
                      |||||| |++|+++|+.|++.|.+|+||||.. .++...+.       .    +. ..+.. +.. .++.+.+.++... 
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~-~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~   79 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRI-DGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS   79 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSST-TCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence            899999 9999999999999999999999983 22221110       0    11 11111 111 1232322221110 


Q ss_pred             ------h--hhcCCCcccccc---cCcceeeec-cc-cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EE
Q 009427          176 ------A--TKFNPNRCGFEG---KGEIWVEDI-LN-LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LL  241 (535)
Q Consensus       176 ------~--~~~~~~~~~~~~---~~~~~~~~~-~~-~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~  241 (535)
                            .  ..+.   +.|..   ....+...+ .. .......+.+.|.+.+.+.|++++++++| ++..+++.+. +.
T Consensus        80 ~~~~~i~~l~~~G---v~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~  155 (472)
T 2e5v_A           80 EAKNVIETFESWG---FEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFV  155 (472)
T ss_dssp             HHHHHHHHHHHTT---CCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHcC---CCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEE
Confidence                  0  0110   11100   000000000 00 11234678888999888889999999999 9987766542 23


Q ss_pred             Ec-CCeEEEcCeEEEccCCChHHH
Q 009427          242 LA-EGKILSSHLIIDAMGNFSPVV  264 (535)
Q Consensus       242 ~~-~G~~i~a~lVV~AdG~~S~v~  264 (535)
                      +. ++.++.|+.||+|+|.++.+.
T Consensus       156 v~~~~g~~~a~~VVlAtGg~~~~~  179 (472)
T 2e5v_A          156 TEKRGLVEDVDKLVLATGGYSYLY  179 (472)
T ss_dssp             ETTTEEECCCSEEEECCCCCGGGS
T ss_pred             EEeCCCeEEeeeEEECCCCCcccC
Confidence            32 234588999999999998664

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.81  E-value=3e-08  Score=103.75  Aligned_cols=57  Identities=23%  Similarity=0.405  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                      ..+.+.|.+.+.+.|++|+.+++|++|..++++++ |.+ +|++++||.||.|+|.+..
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA-DDRIHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTEEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE-CCEEEECCEEEECCCHHHH
Confidence            55788889999999999999999999998888876 666 5888999999999997643

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.80  E-value=2e-08  Score=109.19  Aligned_cols=135  Identities=19%  Similarity=0.222  Sum_probs=84.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCC-CChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGI-LVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl-~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      ++|||||| |++|+++|+.|++.|++|+|||++...++  .|...     ..  -|. .+..  .......+.+...   
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GG--tw~~~-----~y--Pg~~~d~~--~~~y~~~f~~~~~---   74 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG--TWYWN-----RY--PGCRLDTE--SYAYGYFALKGII---   74 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHC-----CC--TTCBCSSC--HHHHCHHHHTTSS---
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCC--ccccC-----CC--CceeecCc--hhhcccccCcccc---
Confidence            68999999 99999999999999999999999853322  11000     00  010 0000  0000001111100   


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeCC--eEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYEN--AAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~~--gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                       ....+    .....+...+.+.+.+.+.+.|.  .++.+++|+++..+++  .+.|++++|++++||.||.|+|..|.-
T Consensus        75 -~~~~~----~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p  149 (545)
T 3uox_A           75 -PEWEW----SENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSAS  149 (545)
T ss_dssp             -TTCCC----SBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC-
T ss_pred             -cCCCc----cccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCC
Confidence             00000    01113456667777777777776  7889999999987654  678888889899999999999976643

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.80  E-value=1.9e-08  Score=100.46  Aligned_cols=111  Identities=21%  Similarity=0.225  Sum_probs=78.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      +|||+||| |++|+++|..|++.|++|+|||+.. ++.   |..         ..++           ..+.        
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~-gG~---~~~---------~~~~-----------~~~~--------   48 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF-GGQ---ILD---------TVDI-----------ENYI--------   48 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST-TGG---GGG---------CCEE-----------CCBT--------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC-Cce---ecc---------cccc-----------cccc--------
Confidence            38999999 9999999999999999999998641 111   000         0000           0000        


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC---CeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE---NAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~---~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                       ..        ...+...+.+.+.+.+.+.|++++.+++|+.+..+.   +.+.+.+++|.++.+|.||+|+|..+
T Consensus        49 -~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           49 -SV--------PKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKW  115 (310)
T ss_dssp             -TB--------SSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             -Cc--------CCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence             00        012345566777777888899999999999986542   25778887888899999999999754

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.78  E-value=3.9e-08  Score=98.55  Aligned_cols=109  Identities=23%  Similarity=0.252  Sum_probs=70.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      +|||+||| ||+|+++|+.|++.|++|+|||++.+++.  +.+           .+..          ..+ |.   +  
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~--~~~-----------~~~i----------~~~-p~---~--   56 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQ--MAN-----------TEEV----------ENF-PG---F--   56 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGG--GGG-----------CSCB----------CCS-TT---C--
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCe--eec-----------cccc----------CCc-CC---c--
Confidence            69999999 99999999999999999999999754432  100           0100          000 00   0  


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                 -.+....+.....+...+.+..+..+..+.... ..... +...+++++++|.+|+|+|+.
T Consensus        57 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~liiAtGs~  115 (312)
T 4gcm_A           57 -----------EMITGPDLSTKMFEHAKKFGAVYQYGDIKSVED-KGEYK-VINFGNKELTAKAVIIATGAE  115 (312)
T ss_dssp             -----------SSBCHHHHHHHHHHHHHHTTCEEEECCCCEEEE-CSSCE-EEECSSCEEEEEEEEECCCEE
T ss_pred             -----------cccchHHHHHHHHHHHhhccccccceeeeeeee-eecce-eeccCCeEEEeceeEEcccCc
Confidence                       012334455556666667777777666555542 22233 333467889999999999964

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.77  E-value=6.9e-08  Score=103.37  Aligned_cols=58  Identities=21%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                      ..+.+.|.+.+++.|++|+.+++|++|..++++++ |++++|+++.||.||.+.+....
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~  279 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHT  279 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC----
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHH
Confidence            46788899999999999999999999999988876 78889999999999998876543

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.75  E-value=3.3e-08  Score=103.55  Aligned_cols=55  Identities=16%  Similarity=0.178  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      ..+.+.|.+.+.+.|++|+.+++|++|..+++++ | +.+|+++.||.||.|+|.+.
T Consensus       189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~  243 (421)
T 3nrn_A          189 KAVIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRE  243 (421)
T ss_dssp             HHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHH
Confidence            5677888888888999999999999998777777 5 44778899999999999764

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.75  E-value=7.6e-09  Score=106.21  Aligned_cols=51  Identities=20%  Similarity=0.236  Sum_probs=42.6

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ..+++..+.+.|.+.+.+.|+++++ ++|+++..+           .+ +||.||+|+|.+|..
T Consensus       137 ~~v~p~~~~~~l~~~~~~~G~~i~~-~~v~~l~~~-----------~~-~a~~VV~A~G~~s~~  187 (363)
T 1c0p_A          137 LSVHAPKYCQYLARELQKLGATFER-RTVTSLEQA-----------FD-GADLVVNATGLGAKS  187 (363)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEEE-CCCSBGGGT-----------CS-SCSEEEECCGGGGGT
T ss_pred             ceecHHHHHHHHHHHHHHCCCEEEE-EEcccHhhc-----------Cc-CCCEEEECCCcchhh
Confidence            4589999999999999999999998 888887421           12 799999999999854

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.74  E-value=7.9e-08  Score=106.63  Aligned_cols=154  Identities=19%  Similarity=0.215  Sum_probs=87.0

Q ss_pred             cccEEEEc-chHHHHHHHHHH---H-CCCcEEEEcccCCCCCccc------cc--c----------cHHH-HHHHHH--c
Q 009427          110 TFDVIVCG-GTLGIFIATALS---F-KGLRVAIVERNTLKGREQE------WN--I----------SRKE-LLELVE--S  163 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LA---r-~G~~V~liEr~~~~~~~~~------~~--i----------s~~~-l~~L~~--l  163 (535)
                      ++|||||| |++|+++|+.|+   + +|.+|+||||....+....      .+  +          +... ++....  .
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s~~~a~G~~~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~  101 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLEDYVRYVTLDMM  101 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTTTTCEEEESCCCCSSSSBSCCCCHHHHHHHHHHHTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCCCCcceecccccccchhhHHHhcCCCCCHHHHHHHHHHHhc
Confidence            58999999 999999999999   6 8999999999865322110      00  1          1111 222222  2


Q ss_pred             CCCChHhHHHHHh------hhcCCCcccccc--cCcceeeeccccccCHHHHHHHHHHHHHhC-CC-EEEeCceEEEEEE
Q 009427          164 GILVEDDIDEATA------TKFNPNRCGFEG--KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GG-VIFEGYSVSSICT  233 (535)
Q Consensus       164 Gl~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~-~i~~~~~V~~i~~  233 (535)
                      ++.+++.++....      ..+....+.|..  .+..+........++...+.+.|.+.+.+. |+ ++++++.|+++..
T Consensus       102 ~l~d~~~v~~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~  181 (643)
T 1jnr_A          102 GLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVREGQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIFELLK  181 (643)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHTTCCBCBCTTSCBCBSSSSCEEEEETTHHHHHHHHHHHHHCGGGEECSEEEEEEEE
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccCCCccccCCCcHHHHHHHHHHHHhcCCCcEEEecCEEEEEEE
Confidence            3333322211110      000000111111  111110000000122344667788888777 99 9999999999987


Q ss_pred             eCC---eEE-EE---EcCCe--EEEcCeEEEccCCChHH
Q 009427          234 YEN---AAV-LL---LAEGK--ILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       234 ~~~---gv~-v~---~~~G~--~i~a~lVV~AdG~~S~v  263 (535)
                      +++   .+. |.   ..+|+  .+.|+.||+|+|.++..
T Consensus       182 ~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~  220 (643)
T 1jnr_A          182 DNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLL  220 (643)
T ss_dssp             CTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred             cCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccccc
Confidence            765   442 22   24554  68999999999998853

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.74  E-value=1.2e-07  Score=101.56  Aligned_cols=56  Identities=13%  Similarity=0.083  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          205 AKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      ..+.+.|.+.+.+.| ++|+.+++|++|+.+++++.|++.+|++++||.||.|.|..
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHH
Confidence            457777888888888 89999999999988888888988888889999999999964

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.70  E-value=3.7e-09  Score=108.06  Aligned_cols=52  Identities=15%  Similarity=0.241  Sum_probs=42.9

Q ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHH
Q 009427          200 LGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       200 ~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v  263 (535)
                      ..+++..+.+.|.+.+++.|+++++ ++|++++..           ..++|+.||.|+|.+|..
T Consensus       137 ~~v~p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~-----------~~~~a~~VV~A~G~~s~~  188 (351)
T 3g3e_A          137 LILEGKNYLQWLTERLTERGVKFFQ-RKVESFEEV-----------AREGADVIVNCTGVWAGA  188 (351)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEE-CCCCCHHHH-----------HHTTCSEEEECCGGGGGG
T ss_pred             eEEcHHHHHHHHHHHHHHCCCEEEE-EEeCCHHHh-----------hcCCCCEEEECCCcChHh
Confidence            5589999999999999999999998 888776321           126799999999999854

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.70  E-value=9.7e-08  Score=100.13  Aligned_cols=48  Identities=15%  Similarity=0.123  Sum_probs=39.4

Q ss_pred             HHHHHH-hCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          211 VKKRFI-SLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       211 L~~~a~-~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      +.+++. +.| +|+.+++|++|+.++++++|++.+|++++||.||.|.|.
T Consensus       209 l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~  257 (431)
T 3k7m_X          209 LVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPM  257 (431)
T ss_dssp             HHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCG
T ss_pred             HHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCc
Confidence            344433 346 999999999998878889999888888999999999993

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.69  E-value=1.3e-07  Score=94.30  Aligned_cols=108  Identities=16%  Similarity=0.180  Sum_probs=76.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEE-EcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAI-VERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~l-iEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .+||+||| |++|+++|..|+++|++|+| +||..+++.   +...          ..          ...| |.     
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~---~~~~----------~~----------~~~~-~~-----   54 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQ---ITSS----------SE----------IENY-PG-----   54 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGG---GGGC----------SC----------BCCS-TT-----
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCce---eeee----------ce----------eccC-CC-----
Confidence            68999999 99999999999999999999 999644321   0000          00          0000 00     


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC--CeEEEEEc-CCeEEEcCeEEEccCC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAVLLLA-EGKILSSHLIIDAMGN  259 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~--~gv~v~~~-~G~~i~a~lVV~AdG~  259 (535)
                           +     ...+....+...+.+.+.+.|++++.+ +|+++ .++  +.+.+.+. ++ ++.+|.||.|+|.
T Consensus        55 -----~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~  116 (315)
T 3r9u_A           55 -----V-----AQVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGS  116 (315)
T ss_dssp             -----C-----CSCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCE
T ss_pred             -----C-----CCCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCC
Confidence                 0     112345677788888888889999887 89998 666  66774332 34 8999999999996

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.68  E-value=4.6e-08  Score=103.47  Aligned_cols=42  Identities=17%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       220 ~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      ++|+.+++|++|+.+++++.|++.+|++++||.||.|.....
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~  289 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKA  289 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHH
Confidence            689999999999988888999998888899999999998644

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.67  E-value=9.7e-08  Score=103.25  Aligned_cols=112  Identities=21%  Similarity=0.269  Sum_probs=80.8

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      ..+||+||| ||+|+++|+.|++.|++|+|+|+. .++.   +..         ..++               +.   +.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~-~GG~---~~~---------~~~~---------------~~---~~  259 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER-FGGQ---VLD---------TVDI---------------EN---YI  259 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTGG---GTT---------CSCB---------------CC---BT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC-CCCc---ccc---------cccc---------------cc---cC
Confidence            469999999 999999999999999999999974 1111   000         0010               00   00


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC---CeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE---NAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~---~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                        .      .  ...+...+.+.+.+.+.+.|++++.+++|+.+..+.   +.+.|.+.+|.++++|.||+|+|+.+
T Consensus       260 --~------~--~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          260 --S------V--PKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKW  326 (521)
T ss_dssp             --T------B--SSBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             --C------C--CCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence              0      0  012455677788888888899999999999986432   25778887888899999999999754

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.65  E-value=5e-08  Score=108.28  Aligned_cols=154  Identities=13%  Similarity=0.036  Sum_probs=87.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC------CCcEEEEcccCCCCCcc--cc--c-------cc-HHHHHHHH--HcCCCCh
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK------GLRVAIVERNTLKGREQ--EW--N-------IS-RKELLELV--ESGILVE  168 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~------G~~V~liEr~~~~~~~~--~~--~-------is-~~~l~~L~--~lGl~~~  168 (535)
                      ++|||||| |++|+++|+.|+++      |.+|+||||....+...  ..  .       .+ ...++...  ..|+.++
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s~s~AqG~~gi~a~l~~ds~e~~~~~~~~~~~gl~d~  101 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINTYLGDNNADDYVRMVRTDLMGLVRE  101 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTCSTTTTCEEEECCCCTTSCHHHHHHHHHHHTTTCCCH
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCCcccccCcchheeecCCCCHHHHHHHHHHhcCCCccH
Confidence            59999999 99999999999998      99999999986543221  11  1       11 11122111  1244333


Q ss_pred             HhHHHHHh-------------hhcCC---C-ccc-------c--cccCcceeeecc--ccccCHHHHHHHHHHHHHhC--
Q 009427          169 DDIDEATA-------------TKFNP---N-RCG-------F--EGKGEIWVEDIL--NLGVSPAKLIEIVKKRFISL--  218 (535)
Q Consensus       169 ~~~~~~~~-------------~~~~~---~-~~~-------~--~~~~~~~~~~~~--~~~v~~~~l~~~L~~~a~~~--  218 (535)
                      +.++....             ..|..   . ...       |  ..........+.  ...+....+.+.|.+++.+.  
T Consensus       102 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~~G~~~~g~~~~~fg~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~a~~~~~  181 (662)
T 3gyx_A          102 DLIYDLGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKAAGKSLRNGDKPVRSGRWQIMINGESYKVIVAEAAKNALG  181 (662)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCBCEECSSSCEECHHHHHHHTCCTTTTCCBCCSSTTCEEEEETSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccchhhhccccccccCccccccceecccCCHHHHHHHHHHHHHhcCC
Confidence            22211110             01110   0 000       0  000000000000  01122345778888888887  


Q ss_pred             CCEEEeCceEEEEEEeCC---eEE---EE-EcCC--eEEEcCeEEEccCCChHH
Q 009427          219 GGVIFEGYSVSSICTYEN---AAV---LL-LAEG--KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       219 G~~i~~~~~V~~i~~~~~---gv~---v~-~~~G--~~i~a~lVV~AdG~~S~v  263 (535)
                      |+++++++.|+++..+++   .+.   +. ..+|  ..+.|+.||+|+|.++.+
T Consensus       182 gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~~  235 (662)
T 3gyx_A          182 QDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVNV  235 (662)
T ss_dssp             TTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred             CcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCccccc
Confidence            999999999999988766   332   22 2345  368999999999998753

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.64  E-value=1.8e-07  Score=99.68  Aligned_cols=139  Identities=19%  Similarity=0.246  Sum_probs=84.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHH---CCCc---EEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcC---
Q 009427          111 FDVIVCG-GTLGIFIATALSF---KGLR---VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFN---  180 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr---~G~~---V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~---  180 (535)
                      +||+||| |++|+++|..|++   .|++   |+|||+....++  .|......  .+...|+...       ...|.   
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG--~w~~~~~~--g~~~~g~~~~-------~~~y~~l~   71 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG--QWNYTWRT--GLDENGEPVH-------SSMYRYLW   71 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCG--GGSCCSCC--SBCTTSSBCC-------CCCCTTCB
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCC--EeecCCCC--CccccCCCCc-------Cccccchh
Confidence            6999999 9999999999999   9999   999999753222  12110000  0000011000       00110   


Q ss_pred             ---CC-cccccccCcceeee---ccccccCHHHHHHHHHHHHHhCCCE--EEeCceEEEEEEeCC--eEEEEEcC---C-
Q 009427          181 ---PN-RCGFEGKGEIWVED---ILNLGVSPAKLIEIVKKRFISLGGV--IFEGYSVSSICTYEN--AAVLLLAE---G-  245 (535)
Q Consensus       181 ---~~-~~~~~~~~~~~~~~---~~~~~v~~~~l~~~L~~~a~~~G~~--i~~~~~V~~i~~~~~--gv~v~~~~---G-  245 (535)
                         +. ...+..  -.+...   .....++...+.+.+.+.+.+.|+.  ++.+++|+++...++  .+.|++.+   | 
T Consensus        72 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~  149 (464)
T 2xve_A           72 SNGPKECLEFAD--YTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDT  149 (464)
T ss_dssp             CSSCGGGTCBTT--BCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTE
T ss_pred             hcCChhhcccCC--CCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCc
Confidence               00 000100  000000   0011245677888888888888887  889999999988766  67777654   4 


Q ss_pred             -eEEEcCeEEEccCCChH
Q 009427          246 -KILSSHLIIDAMGNFSP  262 (535)
Q Consensus       246 -~~i~a~lVV~AdG~~S~  262 (535)
                       .++.+|.||+|+|++|.
T Consensus       150 ~~~~~~d~VVvAtG~~s~  167 (464)
T 2xve_A          150 IYSEEFDYVVCCTGHFST  167 (464)
T ss_dssp             EEEEEESEEEECCCSSSS
T ss_pred             eEEEEcCEEEECCCCCCC
Confidence             57899999999998663

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.64  E-value=2.9e-07  Score=93.21  Aligned_cols=41  Identities=10%  Similarity=0.091  Sum_probs=33.7

Q ss_pred             CCCeeEeecCCCccccccccc--chHHHHHHHHHHHHHHHHHh
Q 009427          338 FNRILQFGDASGIQSPVSFGG--FGSLTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       338 ~~rvlliGDAA~~~~P~~G~G--i~~al~da~~La~~l~~al~  378 (535)
                      -++++++|||++.+++....|  ++.++.+...+|+.|.++|.
T Consensus       283 vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~la  325 (326)
T 3fpz_A          283 VDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA  325 (326)
T ss_dssp             SBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence            579999999999999887766  44567788899999988874

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.64  E-value=9.7e-08  Score=101.31  Aligned_cols=142  Identities=15%  Similarity=0.126  Sum_probs=80.6

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCC-----CcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKG-----LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPN  182 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G-----~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~  182 (535)
                      ..+|||||| |++|+++|..|++.|     ++|+|||+.+..+.....-.....++    ...+     ... .....|.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~----~~~~-----~~l-~~~~~p~   98 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQ----ISFL-----KDL-VSLRNPT   98 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCS----SCTT-----SSS-STTTCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCC----cchh-----hcc-ccccCCC
Confidence            368999999 999999999999999     99999999864332110000000000    0000     000 0000000


Q ss_pred             -ccccc---c-cCccee-eeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe---CCe--EEEEEcCCe----E
Q 009427          183 -RCGFE---G-KGEIWV-EDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY---ENA--AVLLLAEGK----I  247 (535)
Q Consensus       183 -~~~~~---~-~~~~~~-~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~---~~g--v~v~~~~G~----~  247 (535)
                       ...|.   . .+..+. ............+.+.+...+.+.++.++.+++|++++.+   ++.  ++|.+.+|.    +
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~  178 (463)
T 3s5w_A           99 SPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELV  178 (463)
T ss_dssp             CTTSHHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEE
T ss_pred             CCCChhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEE
Confidence             00000   0 000000 0000111234566677777777778899999999999876   332  366666654    7


Q ss_pred             EEcCeEEEccCCC
Q 009427          248 LSSHLIIDAMGNF  260 (535)
Q Consensus       248 i~a~lVV~AdG~~  260 (535)
                      +.+|.||+|+|..
T Consensus       179 ~~~d~lVlAtG~~  191 (463)
T 3s5w_A          179 RTTRALVVSPGGT  191 (463)
T ss_dssp             EEESEEEECCCCE
T ss_pred             EEeCEEEECCCCC
Confidence            9999999999973

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.59  E-value=3.6e-07  Score=97.77  Aligned_cols=55  Identities=20%  Similarity=0.312  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      ..+.+.+.+.+++.|++++.+++|++++.+++++.+.+++|+++.+|.||.|+|.
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~  286 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGR  286 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCC
Confidence            4566777778888899999999999998877788888888888999999999995

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.58  E-value=1.1e-07  Score=101.10  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCCC
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      .+.+.|.+.+.+.|++|+.+++|++|+.++++ +.|++ ++.++.||.||.|++.+
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVISAIPAS  289 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEECCCHH
Confidence            46778888888889999999999999887766 77766 55679999999999864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.58  E-value=9.7e-08  Score=101.59  Aligned_cols=137  Identities=20%  Similarity=0.125  Sum_probs=76.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++||+||| |++|+++|+.|++.|++|+|||+..+++.  ..+...-.-..+.     ....+...+...+....+.  .
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~gG~--~~~~g~~psk~ll-----~~~~~~~~~~~~~~~~g~~--~   73 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGV--CLNVGCIPSKALL-----RNAELVHIFTKDAKAFGIS--G   73 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCTTHH--HHHHSHHHHHHHH-----HHHHHHHHHHHHTTTTTEE--E
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc--ccccCchhhHHHH-----HHHHHHHHHHHHHHhcCCC--C
Confidence            48999999 99999999999999999999999844321  1010000000110     0000001111011111110  0


Q ss_pred             cCcceeeeccccccC----HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVS----PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~----~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG~~S  261 (535)
                      ...   .+.....-.    ...+.+.+.+.+.+.|++++.++.+.   .+++.+.+.+.+|  .++++|.||+|+|..+
T Consensus        74 ~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~~~~~d~lViAtG~~~  146 (464)
T 2a8x_A           74 EVT---FDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF---ADANTLLVDLNDGGTESVTFDNAIIATGSST  146 (464)
T ss_dssp             CCE---ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE---SSSSEEEEEETTSCCEEEEEEEEEECCCEEE
T ss_pred             CCc---cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEEeCCCceEEEEcCEEEECCCCCC
Confidence            000   000000000    12344556666777899999887653   3566777877777  6899999999999865

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.56  E-value=1.3e-07  Score=101.27  Aligned_cols=141  Identities=22%  Similarity=0.173  Sum_probs=74.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++|||||| |++|+++|+.|++.|++|+|||+....++ .+.+...-.-..+.     ...++...+. .+....+.+..
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG-~~~~~g~~psk~ll-----~~~~~~~~~~-~~~~~gi~~~~   78 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGG-VCLNVGCIPSKALL-----HNAAVIDEVR-HLAANGIKYPE   78 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSH-HHHHHSHHHHHHHH-----HHHHHHHHHH-HGGGGTCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCC-ceeeecccchHHHH-----HHHHHHHHHH-HHHhCCcccCC
Confidence            69999999 99999999999999999999999532221 11111000000110     0000001110 01000000000


Q ss_pred             cCcceeeeccccc-cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC------------eEEEcCeEEE
Q 009427          189 KGEIWVEDILNLG-VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG------------KILSSHLIID  255 (535)
Q Consensus       189 ~~~~~~~~~~~~~-v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G------------~~i~a~lVV~  255 (535)
                       ............ -....+.+.+.+.+.+.|++++.++.+.   .+++.+.+.+.+|            .++++|.||+
T Consensus        79 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lVi  154 (482)
T 1ojt_A           79 -PELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF---LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCII  154 (482)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE---EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEE
T ss_pred             -CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE---ccCCEEEEEecCCcccccccccCcceEEEcCEEEE
Confidence             000000000000 0012233345556667899999887654   3566777765555            5799999999


Q ss_pred             ccCCCh
Q 009427          256 AMGNFS  261 (535)
Q Consensus       256 AdG~~S  261 (535)
                      |+|.++
T Consensus       155 AtGs~p  160 (482)
T 1ojt_A          155 AAGSRV  160 (482)
T ss_dssp             CCCEEE
T ss_pred             CCCCCC
Confidence            999865

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.55  E-value=1.2e-07  Score=101.07  Aligned_cols=139  Identities=18%  Similarity=0.182  Sum_probs=75.6

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC-CCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT-LKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~-~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      .++||+||| |++|+++|..|++.|++|+|||+.+ +++.  ..+...-.-..+..    .....+. +...+....+.+
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~--~~~~g~~p~k~l~~----~~~~~~~-~~~~~~~~g~~~   77 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT--CLNVGCIPSKALLH----SSHMYHE-AKHSFANHGVKV   77 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCS--HHHHSHHHHHHHHH----HHHHHHH-HHHTHHHHTEEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccc--ccCcCccchHHHHH----HHHHHHH-HHHHHHhcCccc
Confidence            369999999 9999999999999999999999984 3332  11110000001100    0000000 000000000000


Q ss_pred             cccCcceeeeccccccC----HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccCCC
Q 009427          187 EGKGEIWVEDILNLGVS----PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF  260 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~----~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG~~  260 (535)
                        ...  ..+.....-.    ...+.+.+.+.+.+.|++++.++.+.   .+++.+.|.+.+|  .++++|.||+|+|..
T Consensus        78 --~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~  150 (470)
T 1dxl_A           78 --SNV--EIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF---VSPSEISVDTIEGENTVVKGKHIIIATGSD  150 (470)
T ss_dssp             --SCE--EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE---EETTEEEECCSSSCCEEEECSEEEECCCEE
T ss_pred             --CCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE---ecCCEEEEEeCCCceEEEEcCEEEECCCCC
Confidence              000  0000000000    11233444555666789999988654   3567777777677  689999999999976


Q ss_pred             h
Q 009427          261 S  261 (535)
Q Consensus       261 S  261 (535)
                      +
T Consensus       151 p  151 (470)
T 1dxl_A          151 V  151 (470)
T ss_dssp             E
T ss_pred             C
Confidence            5

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.53  E-value=6.2e-07  Score=95.09  Aligned_cols=137  Identities=18%  Similarity=0.111  Sum_probs=75.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++||+||| |++|+++|..|++.|++|+|||+..+++.  +.+...-.-..+.     ........+ ..+....+.+  
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~gG~--~~~~g~~p~k~l~-----~~~~~~~~~-~~~~~~g~~~--   72 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGV--CLNVGCIPSKALI-----SASHRYEQA-KHSEEMGIKA--   72 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHH--HHHTSHHHHHHHH-----HHHHHHHHH-HTCGGGTEEC--
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCc--CcCcCchhhHHHH-----HHHHHHHHH-HHHHhcCccc--
Confidence            58999999 99999999999999999999999844321  1011100001110     000000011 0010000000  


Q ss_pred             cCcceeeeccccccC----HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-eEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVS----PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~----~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G-~~i~a~lVV~AdG~~S  261 (535)
                      ...  ..+.....-.    ...+.+.+.+.+.+.|++++.++.+.   .+++.+.|.+.+| .++.+|.||+|+|..+
T Consensus        73 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~i~~d~lViATGs~p  145 (455)
T 1ebd_A           73 ENV--TIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF---VDANTVRVVNGDSAQTYTFKNAIIATGSRP  145 (455)
T ss_dssp             CSC--EECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEE---EETTEEEEEETTEEEEEECSEEEECCCEEE
T ss_pred             CCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCeEEEEeCCCcEEEEeCEEEEecCCCC
Confidence            000  0000000000    01233445566667899999887653   3567788877777 6899999999999754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.52  E-value=2.8e-07  Score=98.38  Aligned_cols=140  Identities=19%  Similarity=0.179  Sum_probs=74.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++||+||| |++|+++|+.|++.|++|+|||+....++. +.+...-.-..+..    .....+.. ...+....+.+. 
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~-~~~~g~~psk~l~~----~~~~~~~~-~~~~~~~gi~~~-   77 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGT-CLNVGCIPSKALLN----NSHLFHQM-HTEAQKRGIDVN-   77 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH-HHHHSHHHHHHHHH----HHHHHHHH-HHTSGGGTEEEC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCc-cceeccHHHHHHHH----HHHHHHHH-HHHHHhcCcccC-
Confidence            58999999 999999999999999999999995322211 10100000000000    00000111 001110000000 


Q ss_pred             cCcceeeeccccc----cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eE------EEcCeEEEc
Q 009427          189 KGEIWVEDILNLG----VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KI------LSSHLIIDA  256 (535)
Q Consensus       189 ~~~~~~~~~~~~~----v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~------i~a~lVV~A  256 (535)
                       .. ...+.....    -....+...+.+.+.+.|++++.++.+..   +++.+.|.+.+|  .+      +++|.||+|
T Consensus        78 -~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~---~~~~v~V~~~~G~~~~~~~~~~i~~d~lViA  152 (478)
T 1v59_A           78 -GD-IKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVA  152 (478)
T ss_dssp             -SC-EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEEC
T ss_pred             -CC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc---cCCeEEEEecCCCcccccccceEEeCEEEEC
Confidence             00 000000000    00112333455566678999999887642   556677777666  46      999999999


Q ss_pred             cCCCh
Q 009427          257 MGNFS  261 (535)
Q Consensus       257 dG~~S  261 (535)
                      +|..+
T Consensus       153 tGs~p  157 (478)
T 1v59_A          153 TGSEV  157 (478)
T ss_dssp             CCEEE
T ss_pred             cCCCC
Confidence            99765

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.48  E-value=5.1e-07  Score=96.01  Aligned_cols=53  Identities=17%  Similarity=0.214  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE---cCCeEEEcCeEEEccCCCh
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL---AEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~---~~G~~i~a~lVV~AdG~~S  261 (535)
                      .+.+.|.+.+   |++|+.+++|++|..+++++.|++   .+|++++||.||.|.+...
T Consensus       239 ~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~  294 (478)
T 2ivd_A          239 VLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHA  294 (478)
T ss_dssp             HHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHH
T ss_pred             HHHHHHHHHh---hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHH
Confidence            3555555544   678999999999987777788887   6777899999999998654

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.48  E-value=3.7e-07  Score=97.08  Aligned_cols=40  Identities=10%  Similarity=-0.024  Sum_probs=36.3

Q ss_pred             CEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          220 GVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       220 ~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      ++|+.+++|++|+.++++++|++.+| +++||.||.|.+.+
T Consensus       249 ~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~  288 (475)
T 3lov_A          249 SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHP  288 (475)
T ss_dssp             CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHH
T ss_pred             CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHH
Confidence            69999999999998888999988888 79999999999854

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.48  E-value=3.7e-07  Score=97.82  Aligned_cols=33  Identities=36%  Similarity=0.621  Sum_probs=30.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +|||+||| |++|+++|+.|++.|++|+||||..
T Consensus        25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   58 (491)
T 3urh_A           25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRS   58 (491)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            59999999 9999999999999999999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.47  E-value=2.3e-07  Score=98.89  Aligned_cols=33  Identities=39%  Similarity=0.585  Sum_probs=31.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +|||+||| |++|+++|+.|++.|++|+|||+..
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~   36 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            69999999 9999999999999999999999985

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.44  E-value=7.8e-07  Score=94.67  Aligned_cols=132  Identities=17%  Similarity=0.071  Sum_probs=71.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      +|||+||| |++|+++|..|++.|++|+||||....++. +.+...-.-..+...    ....+........+....+. 
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~-~~~~gciPsk~l~~~----a~~~~~~~~~~~~~~~~~~~-   77 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGN-CLYSGCVPSKTVREV----IQTAWRLTNIANVKIPLDFS-   77 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHH-HHHHSHHHHHHHHHH----HHHHHHHHHHHCSCCCCCHH-
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCc-ccccCCCchHHHHHH----HHHHHHHHhcccCCCCcCHH-
Confidence            59999999 999999999999999999999965322211 001000000001000    00000000000000001000 


Q ss_pred             cCcceeeeccccccCHHH---HH--HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeE--EEcCeEEEccCCC
Q 009427          189 KGEIWVEDILNLGVSPAK---LI--EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKI--LSSHLIIDAMGNF  260 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~---l~--~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~--i~a~lVV~AdG~~  260 (535)
                             .....   ...   +.  ..+.+.+.+.|++++.+ +++.+  +++.+.|...+|++  +.+|.||+|+|..
T Consensus        78 -------~~~~~---~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~i--d~~~~~V~~~~g~~~~~~~d~lviAtG~~  143 (466)
T 3l8k_A           78 -------TVQDR---KDYVQELRFKQHKRNMSQYETLTFYKG-YVKIK--DPTHVIVKTDEGKEIEAETRYMIIASGAE  143 (466)
T ss_dssp             -------HHHHH---HHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEE--ETTEEEEEETTSCEEEEEEEEEEECCCEE
T ss_pred             -------HHHHH---HHhheeccccchHHHHHHhCCCEEEEe-EEEEe--cCCeEEEEcCCCcEEEEecCEEEECCCCC
Confidence                   00000   011   11  33444445568888766 56665  46778888877877  9999999999963

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.42  E-value=1.3e-06  Score=94.17  Aligned_cols=53  Identities=11%  Similarity=0.084  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      .+.+.|.+..   |++|+.+++|++|..++++++|.+.+|+++.||.||.|.+...
T Consensus       216 ~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          216 QVSERIMDLL---GDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHHHHHHHH---GGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGG
T ss_pred             HHHHHHHHHc---CCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHH
Confidence            3444444433   7889999999999887788888888888899999999998653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.42  E-value=5.5e-07  Score=95.82  Aligned_cols=35  Identities=29%  Similarity=0.407  Sum_probs=32.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      ++||+||| |++|+++|+.|++.|++|+|||++.++
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~G   39 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIG   39 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            68999999 999999999999999999999998554

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.36  E-value=3.6e-06  Score=89.50  Aligned_cols=56  Identities=14%  Similarity=0.105  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEE-eCCeE-EEEEcCCeEEEcCeEEEccCCC
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICT-YENAA-VLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~-~~~gv-~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      ..+.+.|.+.+++.|++++.+++|++|.. +++.+ .|.+.+|++++||.||.|.|..
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            46788899999999999999999999987 44443 4677778889999999999965

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.36  E-value=1.6e-06  Score=93.66  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=31.9

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .+|||+||| |++|+++|+.|++.|++|+|||+.+
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            369999999 9999999999999999999999964

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.36  E-value=2e-06  Score=91.65  Aligned_cols=140  Identities=21%  Similarity=0.197  Sum_probs=73.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++||+||| |++|+++|..|++.|++|+|||+....++. +.+...-.-..+..    ............+..  ..+..
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~-~~~~g~~Psk~l~~----~~~~~~~~~~~~~~~--~g~~~   78 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGT-CLNVGCIPSKALLN----NSHYYHMAHGTDFAS--RGIEM   78 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHH-HHHHSHHHHHHHHH----HHHHHHHHHSSHHHH--TTEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCc-ccccCccchHHHHH----HHHHHHHhhhhhHhh--Ccccc
Confidence            69999999 999999999999999999999998432221 00100000001100    000000000000000  00000


Q ss_pred             cCcceeeeccccccC----HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-C-eEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVS----PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-G-KILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~----~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~-G-~~i~a~lVV~AdG~~S  261 (535)
                       .. ...+.....-.    ...+...+.+.+.+.|++++.++.+ .+  +++.+.|.+.+ | .++++|.||+|+|..+
T Consensus        79 -~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~--~~~~~~v~~~~gg~~~~~~d~lViAtGs~p  152 (474)
T 1zmd_A           79 -SE-VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK-IT--GKNQVTATKADGGTQVIDTKNILIATGSEV  152 (474)
T ss_dssp             -SC-EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-EE--ETTEEEEECTTSCEEEEEEEEEEECCCEEE
T ss_pred             -CC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ee--cCCEEEEEecCCCcEEEEeCEEEECCCCCC
Confidence             00 00000000000    0112233455566789999988643 33  56777787766 4 5799999999999754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.34  E-value=7.8e-07  Score=93.74  Aligned_cols=108  Identities=17%  Similarity=0.282  Sum_probs=69.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC--cEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      .+|||||| |++|+++|..|++.|.  +|+|||+.......+. .        +               ...+-.+... 
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-~--------l---------------~~~~~~~~~~-   58 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLP-P--------L---------------SKAYLAGKAT-   58 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSG-G--------G---------------GTTTTTTCSC-
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCC-C--------C---------------cHHHhCCCCC-
Confidence            48999999 9999999999999998  7999998742211000 0        0               0000000000 


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                        ....        ...       +.+.+.+.|++++.+++|+.+..++  ..|.+++|+++.+|.||+|+|..+
T Consensus        59 --~~~~--------~~~-------~~~~~~~~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           59 --AESL--------YLR-------TPDAYAAQNIQLLGGTQVTAINRDR--QQVILSDGRALDYDRLVLATGGRP  114 (431)
T ss_dssp             --SGGG--------BSS-------CHHHHHHTTEEEECSCCEEEEETTT--TEEEETTSCEEECSEEEECCCEEE
T ss_pred             --hHHh--------ccc-------CHHHHHhCCCEEEeCCEEEEEECCC--CEEEECCCCEEECCEEEEcCCCCc
Confidence              0000        000       1123346789999999999986433  356667788899999999999754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.34  E-value=6.5e-07  Score=93.71  Aligned_cols=108  Identities=20%  Similarity=0.209  Sum_probs=70.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCc--EEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLR--VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~--V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      .++|||||| |++|+++|..|+++|++  |+|||+.+..+..+. .        +               ...+-.+.. 
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~-~--------l---------------~~~~~~~~~-   62 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP-P--------L---------------SKEYLAREK-   62 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG-G--------G---------------GTTTTTTSS-
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc-c--------C---------------CHHHHcCCC-
Confidence            368999999 99999999999999988  999999853221110 0        0               000100000 


Q ss_pred             ccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       186 ~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                         ..     .  .....       ..+.+.+.+++++.+++|+.+.  .+...|.+.+|.++.+|.+|.|+|..
T Consensus        63 ---~~-----~--~~~~~-------~~~~~~~~~i~~~~~~~v~~id--~~~~~v~~~~g~~~~~d~lvlAtG~~  118 (415)
T 3lxd_A           63 ---TF-----E--RICIR-------PAQFWEDKAVEMKLGAEVVSLD--PAAHTVKLGDGSAIEYGKLIWATGGD  118 (415)
T ss_dssp             ---CS-----G--GGBSS-------CHHHHHHTTEEEEETCCEEEEE--TTTTEEEETTSCEEEEEEEEECCCEE
T ss_pred             ---CH-----H--HhccC-------CHHHHHHCCcEEEeCCEEEEEE--CCCCEEEECCCCEEEeeEEEEccCCc
Confidence               00     0  00000       1123345789999999999984  34445677788899999999999953

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.32  E-value=3e-06  Score=90.08  Aligned_cols=139  Identities=19%  Similarity=0.204  Sum_probs=73.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ++||+||| |++|+++|+.|++.|++|+|||+....++. +.+...-.-..+.     ...++...+...+.  ...+..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~-~~~~g~~psk~l~-----~~~~~~~~~~~~~~--~~g~~~   73 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGT-CLNVGCIPSKALL-----HATHLYHDAHANFA--RYGLMG   73 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHH-HHHHSHHHHHHHH-----HHHHHHHHHHHTHH--HHTEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCc-CCCcCcHhHHHHH-----HHHHHHHHHHHHHH--hcCccc
Confidence            58999999 999999999999999999999998422221 1010000000110     00000000000000  000000


Q ss_pred             cCcceeeeccccccC----HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccCCC
Q 009427          189 KGEIWVEDILNLGVS----PAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGNF  260 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~----~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG~~  260 (535)
                      ... ...+.....-.    ...+...+.+.+.+.|++++.++.+.   .+++.+.|.+.+|  .++.+|.+|+|+|..
T Consensus        74 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~---i~~~~~~v~~~~G~~~~~~~d~lviAtG~~  147 (468)
T 2qae_A           74 GEG-VTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSF---ETAHSIRVNGLDGKQEMLETKKTIIATGSE  147 (468)
T ss_dssp             GGG-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEE---EETTEEEEEETTSCEEEEEEEEEEECCCEE
T ss_pred             CCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---eeCCEEEEEecCCceEEEEcCEEEECCCCC
Confidence            000 00000000000    01223334455566789998887542   3567788877777  689999999999964

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.31  E-value=3.6e-06  Score=91.20  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +||||||| ||+|..+|..+++.|.+|+|||+..
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            59999999 9999999999999999999999764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.31  E-value=2.3e-06  Score=91.38  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=32.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      ++||+||| |++|+++|+.|++.|++|+|||++.++
T Consensus        11 ~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~~G   46 (479)
T 2hqm_A           11 HYDYLVIGGGSGGVASARRAASYGAKTLLVEAKALG   46 (479)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSCTT
T ss_pred             cCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCCcC
Confidence            69999999 999999999999999999999998543

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.28  E-value=6.8e-06  Score=86.60  Aligned_cols=42  Identities=21%  Similarity=0.150  Sum_probs=36.5

Q ss_pred             CCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCCC
Q 009427          218 LGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       218 ~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      .|++|+.+++|++|..++++ +.|++ +|+++.||.||.|.+..
T Consensus       225 lg~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~  267 (453)
T 2yg5_A          225 LGDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPN  267 (453)
T ss_dssp             HGGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGG
T ss_pred             cCCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHH
Confidence            37889999999999988888 87776 67889999999999864

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.28  E-value=2e-06  Score=91.41  Aligned_cols=36  Identities=31%  Similarity=0.444  Sum_probs=32.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      +|||+||| |++|+++|+.|+++|++|+|||+..+++
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~~~GG   41 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGG   41 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCCCC
Confidence            59999999 9999999999999999999999965443

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.27  E-value=2.7e-06  Score=95.91  Aligned_cols=42  Identities=14%  Similarity=0.010  Sum_probs=37.7

Q ss_pred             CCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       218 ~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      .|++|+.+++|++|..++++++|++.+|++++||.||.|...
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~  583 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPL  583 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCH
T ss_pred             hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCH
Confidence            478999999999998888889999888888999999999963

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.27  E-value=1.8e-06  Score=92.01  Aligned_cols=36  Identities=36%  Similarity=0.553  Sum_probs=33.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      +|||+||| |++|+++|+.|++.|++|+|||++.+++
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~~GG   56 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGG   56 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            69999999 9999999999999999999999886543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.26  E-value=2.3e-06  Score=90.63  Aligned_cols=108  Identities=16%  Similarity=0.134  Sum_probs=68.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .|||||| |++|+++|..|++.  |.+|+|||+....+....              ++.      ......+..      
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~--------------~~~------~~~~~~~~~------   56 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSG--------------GLS------AYFNHTINE------   56 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCc--------------cch------hhhcCCCCC------
Confidence            5899999 99999999999998  999999999853331110              000      000000000      


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CCeEEEcCeEEEccCCC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EGKILSSHLIIDAMGNF  260 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~-~G~~i~a~lVV~AdG~~  260 (535)
                       ....      .         ....+.+.+.|++++.+++|+++..+++.+.+... ++.++.+|.+|.|+|..
T Consensus        57 -~~~~------~---------~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~  114 (452)
T 3oc4_A           57 -LHEA------R---------YITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGAS  114 (452)
T ss_dssp             -----------C---------CCCHHHHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCC
T ss_pred             -HHHh------h---------cCCHHHHHHCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcc
Confidence             0000      0         00122334578999999999999766666666522 45679999999999974

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.26  E-value=3.2e-06  Score=90.70  Aligned_cols=133  Identities=11%  Similarity=0.116  Sum_probs=72.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC---CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~---G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      ++|||||| |++|+++|+.|++.   |++|+|||+..+++.  +.+...-.-..+.     ........+ ..+....+.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~~GG~--~~~~g~~psk~l~-----~~a~~~~~~-~~~~~~g~~   73 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGA--AVLDDCVPSKTFI-----ASTGLRTEL-RRAPHLGFH   73 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHH--HHHTSHHHHHHHH-----HHHHHHHHH-TTTTTTTBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCCcCCc--ccCcCccchHHHH-----HHHHHHHHH-HHHHhCCCc
Confidence            48999999 99999999999999   999999999864332  1111100001110     000000000 111100000


Q ss_pred             ccccCcceeeeccccccCHH-----------HHHHHHHHHHHhCCCEEEeCceEEEEEEe----CCeEEEEEcCCe--EE
Q 009427          186 FEGKGEIWVEDILNLGVSPA-----------KLIEIVKKRFISLGGVIFEGYSVSSICTY----ENAAVLLLAEGK--IL  248 (535)
Q Consensus       186 ~~~~~~~~~~~~~~~~v~~~-----------~l~~~L~~~a~~~G~~i~~~~~V~~i~~~----~~gv~v~~~~G~--~i  248 (535)
                      +...         ...++..           .+...+.+.+.+.|++++.++ ++.+...    ++.+.|...+|+  ++
T Consensus        74 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~  143 (499)
T 1xdi_A           74 IDFD---------DAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEH  143 (499)
T ss_dssp             ---------------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEE
T ss_pred             cccC---------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEE
Confidence            0000         0001111           233345566677899999885 5554321    145666666675  79


Q ss_pred             EcCeEEEccCCC
Q 009427          249 SSHLIIDAMGNF  260 (535)
Q Consensus       249 ~a~lVV~AdG~~  260 (535)
                      .+|.+|+|+|..
T Consensus       144 ~~d~lviATGs~  155 (499)
T 1xdi_A          144 EADVVLVATGAS  155 (499)
T ss_dssp             EESEEEECCCEE
T ss_pred             EeCEEEEcCCCC
Confidence            999999999964

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.25  E-value=4.3e-06  Score=89.27  Aligned_cols=33  Identities=33%  Similarity=0.510  Sum_probs=30.9

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .+|||+||| |++|+++|+.|++.|++|+||||.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            369999999 999999999999999999999963

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.25  E-value=6.7e-06  Score=85.03  Aligned_cols=97  Identities=21%  Similarity=0.275  Sum_probs=76.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |+.|+.+|..|++.|.+|+|+|+......                 ..                        
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------------~~------------------------  184 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP-----------------GL------------------------  184 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----------------TT------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh-----------------cc------------------------
Confidence            4799999 99999999999999999999998731100                 00                        


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                   .+..+.+.+.+.+++.|++++.+++|++++.+++++.+.+.+|+++.+|.||.|+|..+
T Consensus       185 -------------~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p  243 (384)
T 2v3a_A          185 -------------LHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRP  243 (384)
T ss_dssp             -------------SCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             -------------cCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCc
Confidence                         00122245666677789999999999999887778888888888899999999999643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.25  E-value=1.4e-06  Score=92.31  Aligned_cols=33  Identities=30%  Similarity=0.570  Sum_probs=31.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +|||+||| |++|+++|..|++.|++|+|||+..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~   34 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEK   34 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCC
Confidence            38999999 9999999999999999999999984

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.24  E-value=5.5e-06  Score=88.74  Aligned_cols=30  Identities=27%  Similarity=0.481  Sum_probs=29.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHH-CCCcEEEEc
Q 009427          110 TFDVIVCG-GTLGIFIATALSF-KGLRVAIVE  139 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr-~G~~V~liE  139 (535)
                      +|||+||| |++|+++|+.|++ .|++|+|||
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   34 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVID   34 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEe
Confidence            69999999 9999999999999 999999999

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.22  E-value=1.6e-06  Score=92.71  Aligned_cols=109  Identities=14%  Similarity=0.076  Sum_probs=69.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      .+|||||| |++|+++|..|++.  |.+|+|||+....+...+      .+..+              ....+. .    
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~------~~~~~--------------~~~~~~-~----   90 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC------GLPYV--------------ISGAIA-S----   90 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG------GHHHH--------------HTTSSS-C----
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC------Ccchh--------------hcCCcC-C----
Confidence            47999999 99999999999996  999999999854322111      00000              000000 0    


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCeEEEEE-cCCe--EEEcCeEEEccCCC
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF  260 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a-~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G~--~i~a~lVV~AdG~~  260 (535)
                        .....     .          ...+.+ .+.|++++.+++|+.+..+++.+.+.. .+|+  ++.+|.+|+|+|..
T Consensus        91 --~~~l~-----~----------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~  151 (480)
T 3cgb_A           91 --TEKLI-----A----------RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVR  151 (480)
T ss_dssp             --GGGGB-----S----------SCHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             --HHHhh-----h----------cCHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCc
Confidence              00000     0          011222 234899999999999876566666654 3465  79999999999964

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.22  E-value=7e-06  Score=87.24  Aligned_cols=35  Identities=37%  Similarity=0.586  Sum_probs=32.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      ++||+||| |++|+++|..|++.|++|+|||++.++
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~G   39 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKALG   39 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence            69999999 999999999999999999999998543

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.21  E-value=1.4e-06  Score=91.81  Aligned_cols=105  Identities=17%  Similarity=0.146  Sum_probs=68.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHH---CCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr---~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      ..|||||| |++|+++|..|++   .|++|+|||+.+...    +..   .+..+ ..|.             +.     
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~----~~~---~~~~~-~~g~-------------~~-----   57 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQ----FVP---SNPWV-GVGW-------------KE-----   57 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEE----CGG---GHHHH-HHTS-------------SC-----
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCc----ccC---Ccccc-ccCc-------------cC-----
Confidence            46999999 9999999999999   899999999984211    100   00000 0010             00     


Q ss_pred             ccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       186 ~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                        ...+...+.+.+.+.|++++ ..+|++++.+++  .|++++|+++.+|.||+|+|..+
T Consensus        58 ------------------~~~~~~~l~~~~~~~gv~~~-~~~v~~id~~~~--~V~~~~g~~i~~d~lviAtG~~~  112 (437)
T 3sx6_A           58 ------------------RDDIAFPIRHYVERKGIHFI-AQSAEQIDAEAQ--NITLADGNTVHYDYLMIATGPKL  112 (437)
T ss_dssp             ------------------HHHHEEECHHHHHTTTCEEE-CSCEEEEETTTT--EEEETTSCEEECSEEEECCCCEE
T ss_pred             ------------------HHHHHHHHHHHHHHCCCEEE-EeEEEEEEcCCC--EEEECCCCEEECCEEEECCCCCc
Confidence                              01111113344456789987 468998854333  56777888899999999999754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.21  E-value=4.5e-06  Score=89.28  Aligned_cols=33  Identities=30%  Similarity=0.486  Sum_probs=31.2

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .+|||+||| |++|+++|+.|++.|++|+||||.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~   38 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYV   38 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            369999999 999999999999999999999974

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.21  E-value=5.4e-06  Score=88.11  Aligned_cols=35  Identities=37%  Similarity=0.504  Sum_probs=32.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      ++||+||| |++|+++|..|++.|++|+|||+..++
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~~G   41 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGEVG   41 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            58999999 999999999999999999999998643

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.20  E-value=1.1e-06  Score=90.70  Aligned_cols=103  Identities=17%  Similarity=0.143  Sum_probs=65.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      .||+||| |++|+++|..|++.| +|+|||+.......+      ..+...              +.....+        
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~------~~l~~~--------------~~g~~~~--------   59 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSK------PMLSHY--------------IAGFIPR--------   59 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCS------TTHHHH--------------HTTSSCG--------
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCcccc------chhHHH--------------HhCCCCH--------
Confidence            5999999 999999999999999 999999985432111      001000              0000000        


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      ....     .   .       ..+.+.+.|++++.+++|+.+..  +...|. .+|+++.+|.+|+|+|..
T Consensus        60 ~~~~-----~---~-------~~~~~~~~~v~~~~g~~v~~id~--~~~~V~-~~g~~~~~d~lViATGs~  112 (367)
T 1xhc_A           60 NRLF-----P---Y-------SLDWYRKRGIEIRLAEEAKLIDR--GRKVVI-TEKGEVPYDTLVLATGAR  112 (367)
T ss_dssp             GGGC-----S---S-------CHHHHHHHTEEEECSCCEEEEET--TTTEEE-ESSCEEECSEEEECCCEE
T ss_pred             HHhc-----c---C-------CHHHHHhCCcEEEECCEEEEEEC--CCCEEE-ECCcEEECCEEEECCCCC
Confidence            0000     0   0       11122345899999999998853  334455 577889999999999963

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.20  E-value=4e-06  Score=88.62  Aligned_cols=106  Identities=18%  Similarity=0.139  Sum_probs=66.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      .+||+||| |++|+++|..|++.  |++|+|||+....+...      .        ++.      .     +..+..  
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~------~--------~~p------~-----~~~~~~--   55 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP------C--------GIP------Y-----VVEGLS--   55 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC------c--------CCc------c-----ccCCCC--
Confidence            47999999 99999999999998  88999999985322100      0        110      0     000000  


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCeEEEEEcCC-eEEEcCeEEEccCCC
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMGNF  260 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a-~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G-~~i~a~lVV~AdG~~  260 (535)
                                      +...+.....+.+ .+.|++++.+++|+++  +.+...+.+.++ .++.+|.||.|+|..
T Consensus        56 ----------------~~~~~~~~~~~~~~~~~gi~v~~~~~v~~i--~~~~~~v~~~~g~~~~~~d~lviAtG~~  113 (449)
T 3kd9_A           56 ----------------TPDKLMYYPPEVFIKKRGIDLHLNAEVIEV--DTGYVRVRENGGEKSYEWDYLVFANGAS  113 (449)
T ss_dssp             --------------------------CTHHHHTTCEEETTCEEEEE--CSSEEEEECSSSEEEEECSEEEECCCEE
T ss_pred             ----------------CHHHhhhcCHHHHHHhcCcEEEecCEEEEE--ecCCCEEEECCceEEEEcCEEEECCCCC
Confidence                            0000111111222 4578999999999987  445666777666 479999999999953

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.19  E-value=3e-06  Score=89.69  Aligned_cols=110  Identities=14%  Similarity=0.057  Sum_probs=68.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      +|||||| |++|+++|..|++.  |.+|+|||+....+...      ..+...              ....+.  ...  
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~------~~~~~~--------------~~g~~~--~~~--   56 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLS------CGIALY--------------LGKEIK--NND--   56 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCG------GGHHHH--------------HTTCBG--GGC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCccc------ccchhh--------------hcCCcc--cCC--
Confidence            5899999 99999999999998  99999999985322110      000000              000000  000  


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-C--CeEEEcCeEEEccCCC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-E--GKILSSHLIIDAMGNF  260 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~-~--G~~i~a~lVV~AdG~~  260 (535)
                       ....      ..         .+.+.+.+.|++++.+++|+.+..+++.+.+... +  +.++++|.+|+|+|..
T Consensus        57 -~~~~------~~---------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~  116 (452)
T 2cdu_A           57 -PRGL------FY---------SSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSK  116 (452)
T ss_dssp             -GGGG------BS---------CCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             -HHHh------hh---------cCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCC
Confidence             0000      00         0122334578999999999998655566655431 2  4579999999999964

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.18  E-value=8.6e-06  Score=84.48  Aligned_cols=105  Identities=16%  Similarity=0.168  Sum_probs=69.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      +..|+||| |++|+++|..|++.+.+|+|||+.+..+..+.      .+...              +.....+.      
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~------~l~~~--------------l~g~~~~~------   62 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRP------RLNEI--------------IAKNKSID------   62 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGG------GHHHH--------------HHSCCCGG------
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccC------hhhHH--------------HcCCCCHH------
Confidence            57899999 99999999999888999999999853321110      11111              11000000      


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                        +..        .       ...+.+.+.|++++.+++|++++.++  ..|++++|+++.+|.||.|+|.
T Consensus        63 --~l~--------~-------~~~~~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           63 --DIL--------I-------KKNDWYEKNNIKVITSEFATSIDPNN--KLVTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             --GTB--------S-------SCHHHHHHTTCEEECSCCEEEEETTT--TEEEETTSCEEECSEEEECCCE
T ss_pred             --Hcc--------C-------CCHHHHHHCCCEEEeCCEEEEEECCC--CEEEECCCCEEECCEEEEecCC
Confidence              000        0       01122346799999999999985443  3567778889999999999996

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.15  E-value=2.5e-05  Score=85.28  Aligned_cols=35  Identities=34%  Similarity=0.458  Sum_probs=32.1

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNTL  143 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~~  143 (535)
                      .+||+|||| |.+|+++|..|++.| .+|+|||++..
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            369999999 999999999999998 79999999854

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.15  E-value=2.4e-06  Score=90.24  Aligned_cols=108  Identities=15%  Similarity=0.137  Sum_probs=68.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .|||||| |++|+++|..|++.  |.+|+|||+....+...      ..+..              .....+. .     
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~------~~~~~--------------~~~~~~~-~-----   54 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLS------AGMQL--------------YLEGKVK-D-----   54 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCG------GGHHH--------------HHTTSSC-C-----
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCccc------ccchh--------------hhcCccC-C-----
Confidence            3899999 99999999999998  99999999985322110      00000              0000000 0     


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCe--EEEcCeEEEccCCC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNF  260 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G~--~i~a~lVV~AdG~~  260 (535)
                       ..+..     .          .+.+.+.+.|++++.+++|+.+..+++.+.+.. .+|+  ++++|.+|+|+|..
T Consensus        55 -~~~~~-----~----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~  114 (447)
T 1nhp_A           55 -VNSVR-----Y----------MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAV  114 (447)
T ss_dssp             -GGGSB-----S----------CCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             -HHHhh-----c----------CCHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCC
Confidence             00000     0          011233456899999999999866556565554 3354  48999999999964

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.15  E-value=3.4e-06  Score=87.88  Aligned_cols=104  Identities=19%  Similarity=0.223  Sum_probs=66.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC--cEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .|||||| |++|+++|..|+++|+  +|+|||+.+.....+.              .+          ...+-.....  
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~--------------~l----------~~~~l~~~~~--   55 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRP--------------PL----------SKAYLKSGGD--   55 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSG--------------GG----------GTGGGGSCCC--
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCc--------------cC----------CHHHHCCCCC--
Confidence            4899999 9999999999999999  8999999853221110              00          0000000000  


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                       ...        ....       ..+.+.+.+++++. ++|+.+..+  ...+.+.+|.++.+|.+|.|+|.
T Consensus        56 -~~~--------~~~~-------~~~~~~~~~i~~~~-~~v~~id~~--~~~v~~~~g~~~~~d~lvlAtG~  108 (404)
T 3fg2_P           56 -PNS--------LMFR-------PEKFFQDQAIELIS-DRMVSIDRE--GRKLLLASGTAIEYGHLVLATGA  108 (404)
T ss_dssp             -TTS--------SBSS-------CHHHHHHTTEEEEC-CCEEEEETT--TTEEEESSSCEEECSEEEECCCE
T ss_pred             -HHH--------ccCC-------CHHHHHhCCCEEEE-EEEEEEECC--CCEEEECCCCEEECCEEEEeeCC
Confidence             000        0000       11233456889888 899998543  33566778889999999999996

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.14  E-value=1.1e-05  Score=85.42  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=32.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      ++||+||| |++|+++|..|++.|++|+|||+..++
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~G   40 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALG   40 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccCCCC
Confidence            59999999 999999999999999999999996544

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.14  E-value=1.4e-05  Score=86.37  Aligned_cols=34  Identities=35%  Similarity=0.454  Sum_probs=32.3

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .++|||||| |++|+++|+.|++.|++|+|||++.
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~   76 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   76 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            369999999 9999999999999999999999986

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.13  E-value=1.6e-05  Score=85.34  Aligned_cols=57  Identities=9%  Similarity=0.050  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC--------eEEEEEcCC-----eEEEcCeEEEccCC
Q 009427          203 SPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN--------AAVLLLAEG-----KILSSHLIIDAMGN  259 (535)
Q Consensus       203 ~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~--------gv~v~~~~G-----~~i~a~lVV~AdG~  259 (535)
                      .+..+.+.|...|.+.+..+.++++|++++..++        .++|++.++     .++.|+.||.|+|.
T Consensus       143 ~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~  212 (501)
T 4b63_A          143 ARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG  212 (501)
T ss_dssp             BHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence            4567778888888777778999999999976542        377777543     46899999999994

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.13  E-value=3.8e-06  Score=90.17  Aligned_cols=35  Identities=34%  Similarity=0.543  Sum_probs=32.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      +|||+||| |++|+++|..|++.|++|+|||+..++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~G   37 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLG   37 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCcC
Confidence            48999999 999999999999999999999998643

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.12  E-value=2.4e-06  Score=89.36  Aligned_cols=105  Identities=17%  Similarity=0.245  Sum_probs=69.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCc--EEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLR--VAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~--V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .||+||| |++|+++|..|+++|++  |+|||+.+..+..+. .++                  .........+..+ + 
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~-~l~------------------~~~~~g~~~~~~~-~-   61 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRP-SLS------------------KAVLDGSLERPPI-L-   61 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSG-GGG------------------THHHHTSSSSCCB-S-
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCc-ccc------------------HHHhCCCCCHHHh-c-
Confidence            4899999 99999999999999988  999999853322110 000                  0001101111111 0 


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                              .       .       .+.+.+.+++++.+++|+.+..  +...|.+.+|+++.+|.+|.|+|..
T Consensus        62 --------~-------~-------~~~~~~~~i~~~~~~~v~~id~--~~~~v~~~~g~~~~~d~lvlAtG~~  110 (410)
T 3ef6_A           62 --------A-------E-------ADWYGEARIDMLTGPEVTALDV--QTRTISLDDGTTLSADAIVIATGSR  110 (410)
T ss_dssp             --------S-------C-------TTHHHHTTCEEEESCCEEEEET--TTTEEEETTSCEEECSEEEECCCEE
T ss_pred             --------C-------C-------HHHHHHCCCEEEeCCEEEEEEC--CCCEEEECCCCEEECCEEEEccCCc
Confidence                    0       0       0122356899999999999853  3345677788899999999999964

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.11  E-value=4.9e-07  Score=97.00  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=33.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      +|||+||| |++|+++|..|++.|++|+|||++.+++
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~~GG   44 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGAYGT   44 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSCSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            59999999 9999999999999999999999987554

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.10  E-value=1.4e-05  Score=87.41  Aligned_cols=109  Identities=15%  Similarity=0.085  Sum_probs=70.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      ..||+||| |++|+++|..|++.  |++|+|||+....+...      .        ++      ...+...+.+.    
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~------~--------~l------p~~~~g~~~~~----   91 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFAN------C--------GL------PYYIGGVITER----   91 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCG------G--------GH------HHHHTTSSCCG----
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccC------C--------CC------chhhcCcCCCh----
Confidence            57999999 99999999999998  89999999985332111      0        00      00010000000    


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCe--EEEcCeEEEccCC
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGN  259 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G~--~i~a~lVV~AdG~  259 (535)
                         ....              ...+...+.+.|+.++.+++|+++..+++.+.+.. .+|.  ++.+|.+|.|+|.
T Consensus        92 ---~~~~--------------~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~  150 (588)
T 3ics_A           92 ---QKLL--------------VQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGA  150 (588)
T ss_dssp             ---GGGB--------------SSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             ---HHhh--------------ccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCC
Confidence               0000              01122333456899999999999976666666654 3454  7899999999996

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.10  E-value=1.5e-05  Score=84.35  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=32.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      ++||+||| |++|+++|..|++.|++|+|||++.++
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~G   39 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELG   39 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCCCC
Confidence            69999999 999999999999999999999998543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.09  E-value=2.6e-06  Score=88.80  Aligned_cols=104  Identities=14%  Similarity=0.092  Sum_probs=65.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHH---CCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          111 FDVIVCG-GTLGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr---~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      .|||||| |++|+++|..|++   .|++|+|||++.......               .+ .          .......  
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~---------------~~-~----------~~~~~~~--   53 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRP---------------AL-P----------HVAIGVR--   53 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECC---------------SS-C----------CCCSSCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceecc---------------ch-h----------hcccCCc--
Confidence            3799999 9999999999999   899999999984211000               00 0          0000000  


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe----EEEcCeEEEccCCCh
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK----ILSSHLIIDAMGNFS  261 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~----~i~a~lVV~AdG~~S  261 (535)
                       ...+        +.       ..+.+.+.+.|++++.+ +|+++..++..+  .+.++.    ++.+|.||.|+|...
T Consensus        54 -~~~~--------~~-------~~~~~~~~~~gv~~~~~-~v~~i~~~~~~V--~~~~g~~~~~~~~~d~lViAtG~~~  113 (409)
T 3h8l_A           54 -DVDE--------LK-------VDLSEALPEKGIQFQEG-TVEKIDAKSSMV--YYTKPDGSMAEEEYDYVIVGIGAHL  113 (409)
T ss_dssp             -CCCC--------EE-------EEHHHHTGGGTCEEEEC-EEEEEETTTTEE--EEECTTSCEEEEECSEEEECCCCEE
T ss_pred             -CHHH--------HH-------HHHHHHHhhCCeEEEEe-eEEEEeCCCCEE--EEccCCcccceeeCCEEEECCCCCc
Confidence             0000        00       12344455678998877 898886544444  443442    499999999999853

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.07  E-value=2.7e-05  Score=82.30  Aligned_cols=95  Identities=20%  Similarity=0.264  Sum_probs=74.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |++|+.+|..|++.|.+|+|+|+.+....                 +. +                      
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~-----------------~~-~----------------------  207 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP-----------------TM-D----------------------  207 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-----------------TS-C----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc-----------------cc-C----------------------
Confidence            4799999 99999999999999999999998731000                 00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.+++++.+++++|+++.+|.||.|+|..
T Consensus       208 ---------------~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~  263 (455)
T 2yqu_A          208 ---------------LEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRR  263 (455)
T ss_dssp             ---------------HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCC
Confidence                           11223455556667999999999999988777888888778889999999999954

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.06  E-value=1.9e-05  Score=88.19  Aligned_cols=50  Identities=10%  Similarity=0.149  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCeEEEcCeEEEccCC
Q 009427          208 IEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGN  259 (535)
Q Consensus       208 ~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G~~i~a~lVV~AdG~  259 (535)
                      ...+.+.+.+.|++++.+++|++++  ++++.+...   +++++.+|.||.|+|.
T Consensus       570 ~~~l~~~l~~~GV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~i~aD~VV~A~G~  622 (690)
T 3k30_A          570 VNRIQRRLIENGVARVTDHAVVAVG--AGGVTVRDTYASIERELECDAVVMVTAR  622 (690)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEE--TTEEEEEETTTCCEEEEECSEEEEESCE
T ss_pred             HHHHHHHHHHCCCEEEcCcEEEEEE--CCeEEEEEccCCeEEEEECCEEEECCCC
Confidence            4566777788899999999999984  556665532   3467999999999994

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.04  E-value=6.2e-06  Score=88.40  Aligned_cols=108  Identities=20%  Similarity=0.241  Sum_probs=71.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .+||+||| |++|+++|+.|++. ++|+|||+.+..++....                          .  ......+  
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~--------------------------~--~~~~~g~--  156 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL--------------------------K--GIKQEGF--  156 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG--------------------------T--CSEETTT--
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec--------------------------c--ccccCCC--
Confidence            58999999 99999999999999 999999998543321000                          0  0000000  


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCe--EEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G~--~i~a~lVV~AdG~~S  261 (535)
                      .          .  +...+...+.+.+ +.+++++.+++|.++..+++.+.+.. .+++  ++.+|.+|.|+|+..
T Consensus       157 ~----------~--~~~~~~~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~  219 (493)
T 1y56_A          157 N----------K--DSRKVVEELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAID  219 (493)
T ss_dssp             T----------E--EHHHHHHHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEE
T ss_pred             C----------C--CHHHHHHHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCc
Confidence            0          0  1233344444444 56889999999999877665555443 3453  689999999999643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.04  E-value=8.9e-06  Score=86.54  Aligned_cols=115  Identities=14%  Similarity=0.084  Sum_probs=61.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      ..||+||| |++|+++|..|+++  |++|+|||+....+...              .|+..      .+...+..     
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~--------------~gl~~------~~~g~~~~-----   57 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGG--------------CGIPY------YVSGEVSN-----   57 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccc--------------cccch------hhcCCCCc-----
Confidence            36999999 99999999999999  99999999984322110              01100      00000000     


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCCe--EEEcCeEEEccCC
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEGK--ILSSHLIIDAMGN  259 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G~--~i~a~lVV~AdG~  259 (535)
                        .....     .+   +..+...+...+.+.|++++.+++|+++..++..+.+.. .+|.  ++.+|.+|.|+|.
T Consensus        58 --~~~~~-----~~---~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~  123 (472)
T 3iwa_A           58 --IESLQ-----AT---PYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGS  123 (472)
T ss_dssp             ---------------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             --hHHhc-----cc---cchhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCC
Confidence              00000     00   000111111122246889999999999976666666554 2354  7999999999996

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.03  E-value=7.6e-05  Score=81.78  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|||+||| ||+|+++|..|++.|++|+|||+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            369999999 999999999999999999999984

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.03  E-value=4.4e-05  Score=81.02  Aligned_cols=94  Identities=13%  Similarity=0.133  Sum_probs=72.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |++|+.+|..|++.|.+|+|+|+.+....                 . ++                      
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~~----------------------  209 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-----------------Q-GD----------------------  209 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----------------T-SC----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-----------------c-cC----------------------
Confidence            4799999 99999999999999999999998731100                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-C--Ce--EEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-E--GK--ILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~-~--G~--~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+. +  |+  ++.+|.||.|+|.
T Consensus       210 ---------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~  269 (464)
T 2eq6_A          210 ---------------PETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGR  269 (464)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCc
Confidence                           112244556667789999999999999877777777765 5  75  8999999999995

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.02  E-value=1.2e-05  Score=83.98  Aligned_cols=104  Identities=17%  Similarity=0.195  Sum_probs=68.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC--cEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      .+||+||| |++|+++|..|++.|.  +|+|||+.......+. ..+              .    ..+.... +.    
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~-~~~--------------~----~~~~~~~-~~----   62 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP-PLS--------------K----DFMAHGD-AE----   62 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG-GGG--------------T----HHHHHCC-GG----
T ss_pred             CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCC-CCC--------------H----HHhCCCc-hh----
Confidence            58999999 9999999999999998  4999999743221100 000              0    0000000 00    


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                          ..+        +.          .+.+.|++++.+++|+.+..  +...|.+.+|+++.+|.+|+|+|...
T Consensus        63 ----~~~--------~~----------~~~~~~v~~~~~~~v~~i~~--~~~~v~~~~g~~~~~d~lviAtG~~~  113 (408)
T 2gqw_A           63 ----KIR--------LD----------CKRAPEVEWLLGVTAQSFDP--QAHTVALSDGRTLPYGTLVLATGAAP  113 (408)
T ss_dssp             ----GSB--------CC----------CTTSCSCEEEETCCEEEEET--TTTEEEETTSCEEECSEEEECCCEEE
T ss_pred             ----hhh--------HH----------HHHHCCCEEEcCCEEEEEEC--CCCEEEECCCCEEECCEEEECCCCCC
Confidence                000        00          12356899999999999854  33456677788899999999999743

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.02  E-value=9.6e-06  Score=86.95  Aligned_cols=31  Identities=35%  Similarity=0.537  Sum_probs=29.7

Q ss_pred             CcccEEEEc-chHHHHHHHHHHH-CCCcEEEEc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSF-KGLRVAIVE  139 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr-~G~~V~liE  139 (535)
                      .++||+||| |++|+++|+.|++ .|++|+|||
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE   38 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVD   38 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEe
Confidence            369999999 9999999999999 999999999

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.98  E-value=1.6e-05  Score=86.38  Aligned_cols=109  Identities=10%  Similarity=0.019  Sum_probs=68.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .||+||| |++|+++|..|++.  |++|+|||+....+....              ++      ...+...+.+.     
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~--------------~l------~~~~~~~~~~~-----   56 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANC--------------GL------PYHISGEIAQR-----   56 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGG--------------GH------HHHHTSSSCCG-----
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccccc--------------Cc------hHHhcCCcCCh-----
Confidence            4899999 99999999999998  899999999854321110              00      00010001100     


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCC--eEEEcCeEEEccCCC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEG--KILSSHLIIDAMGNF  260 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G--~~i~a~lVV~AdG~~  260 (535)
                        .....              +.+...+.+.|++++.+++|+++..+.+.+.+.. .+|  .++.+|.||+|+|..
T Consensus        57 --~~~~~--------------~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~  116 (565)
T 3ntd_A           57 --SALVL--------------QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAA  116 (565)
T ss_dssp             --GGGBC--------------CCHHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             --HHhhc--------------cCHHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCC
Confidence              00000              0011112335899999999999976666666654 224  379999999999963

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.96  E-value=4.2e-05  Score=78.75  Aligned_cols=32  Identities=31%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +||+||| |++|+.+|+.|+++|++|+|+|+++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            6999999 9999999999999999999999875

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.95  E-value=1.5e-05  Score=82.25  Aligned_cols=106  Identities=15%  Similarity=0.162  Sum_probs=65.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      ++|||||| |++|+++|..|++.|  .+|+|+|++.  +  ..+.  ...   +               ...+...    
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g--~~~~--~~~---l---------------~~~~~~~----   55 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--G--RSYS--KPM---L---------------STGFSKN----   55 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--C--CEEC--GGG---G---------------GGTTTTT----
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--C--CccC--ccc---c---------------cHHHhCC----
Confidence            58999999 999999999999999  5689999873  1  1110  000   0               0000000    


Q ss_pred             cccCcceeeeccccccCHHHHHH-HHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIE-IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~-~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                     .....+.. .+.+.+.+.|++++.+++|+.+..++.  .|.+. +.++.+|.+|+|+|...
T Consensus        56 ---------------~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~-~~~~~~d~lviAtG~~p  113 (384)
T 2v3a_A           56 ---------------KDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQ--RIWIG-EEEVRYRDLVLAWGAEP  113 (384)
T ss_dssp             ---------------CCHHHHEEECHHHHHHHTTCEEECSCCCCEEEGGGT--EEEET-TEEEECSEEEECCCEEE
T ss_pred             ---------------CCHHHhhccCHHHHHHhCCcEEEeCCEEEEEECCCC--EEEEC-CcEEECCEEEEeCCCCc
Confidence                           00011101 122233467899998999888854333  45553 45799999999999643

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.93  E-value=8e-05  Score=79.02  Aligned_cols=94  Identities=19%  Similarity=0.190  Sum_probs=73.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+....-.                 . ++                      
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~-----------------~-~~----------------------  206 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF-----------------Q-FD----------------------  206 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----------------T-SC----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc-----------------c-cC----------------------
Confidence            3799999 99999999999999999999998721000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe-EEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK-ILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~-~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|+++..+++++.+.+.+|+ ++.+|.||.|+|.
T Consensus       207 ---------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~  262 (463)
T 2r9z_A          207 ---------------PLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGR  262 (463)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCC
Confidence                           011133555667789999999999999877777888888888 8999999999995

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.93  E-value=8.5e-05  Score=77.21  Aligned_cols=95  Identities=22%  Similarity=0.350  Sum_probs=74.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++|+.+....                 ..+                       
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-----------------~~~-----------------------  182 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA-----------------RVV-----------------------  182 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-----------------TTS-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh-----------------hcc-----------------------
Confidence            4699999 99999999999999999999998731100                 000                       


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~  259 (535)
                                    ...+.+.+.+.+++.|++++.+++|+++..+++.+. |.+++|+++.||.||.|+|.
T Consensus       183 --------------~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~  239 (404)
T 3fg2_P          183 --------------TPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGV  239 (404)
T ss_dssp             --------------CHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCE
T ss_pred             --------------CHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCC
Confidence                          012224566677788999999999999987766653 77888989999999999995

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.92  E-value=6.4e-05  Score=79.45  Aligned_cols=94  Identities=16%  Similarity=0.185  Sum_probs=72.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+.+....                 . ++                      
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~~----------------------  207 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-----------------S-FD----------------------  207 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----------------T-SC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-----------------h-hh----------------------
Confidence            3799999 99999999999999999999998731000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+++.|++++.+++|++++.++++ +.+.+.+|+++.+|.||.|+|.
T Consensus       208 ---------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~  263 (450)
T 1ges_A          208 ---------------PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGR  263 (450)
T ss_dssp             ---------------HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCC
Confidence                           012234555666779999999999999766544 6778888888999999999995

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.92  E-value=0.00024  Score=77.53  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=31.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~  142 (535)
                      .+||+|||| |.+|+++|..|++. |.+|+|||++.
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            479999999 99999999999975 89999999986

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.90  E-value=8.8e-05  Score=77.34  Aligned_cols=96  Identities=18%  Similarity=0.247  Sum_probs=73.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++|+.+..-.                 ..+                       
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~-----------------~~~-----------------------  192 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA-----------------RVA-----------------------  192 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-----------------TTS-----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh-----------------hhc-----------------------
Confidence            3699999 99999999999999999999998731100                 000                       


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                    ...+.+.+.+.+++.|++++.+++|+++..+++.+ .|.+++|+++.||.||.|+|..
T Consensus       193 --------------~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~  250 (415)
T 3lxd_A          193 --------------GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIV  250 (415)
T ss_dssp             --------------CHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCE
T ss_pred             --------------CHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCc
Confidence                          01122455666778899999999999997765555 5777889899999999999953

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.87  E-value=0.00011  Score=77.56  Aligned_cols=94  Identities=22%  Similarity=0.310  Sum_probs=71.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |+.|+-+|..|++.|.+|+|+|+.+....                 ++ +                      
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------~~-~----------------------  210 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-----------------GF-E----------------------  210 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----------------TS-C----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-----------------cc-C----------------------
Confidence            4799999 99999999999999999999998721000                 00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.+++++.+++.   +++++.+|.||.|+|.
T Consensus       211 ---------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~  268 (455)
T 1ebd_A          211 ---------------KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGR  268 (455)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCC
Confidence                           012244556667789999999999999877777777664   3567999999999995

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.86  E-value=1.2e-05  Score=85.24  Aligned_cols=57  Identities=11%  Similarity=0.062  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEe--CCeEE-EEEcCCeEEEcCeEEEccCCChH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTY--ENAAV-LLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~--~~gv~-v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                      ..+.+.|.+.+.+.|++++.+++|++|..+  +++++ |.+ +|+++.||.||.|.|.++.
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            467888999999999999999999999887  66543 455 6888999999999998864

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.85  E-value=2.3e-05  Score=82.38  Aligned_cols=102  Identities=19%  Similarity=0.214  Sum_probs=63.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .||||| |++|+++|..|++.+  ++|+|||+.+.-.    +  .+ .+..+ -.|.             +.+..+.+  
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~----~--~p-~l~~v-~~g~-------------~~~~~i~~--   60 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFG----F--TP-AFPHL-AMGW-------------RKFEDISV--   60 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEE----C--GG-GHHHH-HHTC-------------SCGGGSEE--
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCc----c--Cc-cHHHH-hcCC-------------CCHHHhhh--
Confidence            599999 999999999999876  7999999874211    1  00 01111 0021             11111100  


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                             +.              .+.+.+.|++++.+ +|++|+  .+.-+|++++|+++..|++|+|+|+.
T Consensus        61 -------~~--------------~~~~~~~gv~~i~~-~v~~Id--~~~~~V~~~~g~~i~YD~LViAtG~~  108 (430)
T 3hyw_A           61 -------PL--------------APLLPKFNIEFINE-KAESID--PDANTVTTQSGKKIEYDYLVIATGPK  108 (430)
T ss_dssp             -------ES--------------TTTGGGGTEEEECS-CEEEEE--TTTTEEEETTCCEEECSEEEECCCCE
T ss_pred             -------cH--------------HHHHHHCCcEEEEe-EEEEEE--CCCCEEEECCCCEEECCEEEEeCCCC
Confidence                   00              01123457887755 788884  44446777889899999999999974

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.83  E-value=8.2e-06  Score=87.20  Aligned_cols=53  Identities=11%  Similarity=0.114  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      ..+.+.|.+.+.+.|++++.+++|++|..+++.  +++.+|+++.||.||.+.-.
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCH
Confidence            457777887777889999999999999755443  45678999999999988653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.83  E-value=1.8e-05  Score=84.74  Aligned_cols=128  Identities=18%  Similarity=0.261  Sum_probs=70.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHh-hhcCCC--
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATA-TKFNPN--  182 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~-~~~~~~--  182 (535)
                      ..+|||||| |++|+++|..|++.  |.+|+|||+.+..+..+. ..+.    .+. .+.  ......... ..+...  
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~-~lsk----~l~-~~~--~~~~~~~~~~~~~~~~~~   81 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP-PLSK----ELW-FSD--DPNVTKTLRFKQWNGKER   81 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG-GGGT----GGG-CC----CTHHHHCEEECTTSCEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCC-CCCH----Hhh-cCC--ccchhhcccccccccccc
Confidence            369999999 99999999999887  899999999853222111 0000    000 000  000000000 001000  


Q ss_pred             cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          183 RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      .+.+. ....+        .+...    +. ++.+.|++++.+++|+++..++  .+|.+++|+++.+|.||+|+|..
T Consensus        82 ~~~~~-~~~~~--------~~~~~----l~-~~~~~gv~~~~g~~v~~id~~~--~~V~~~~g~~i~yd~lviATGs~  143 (493)
T 1m6i_A           82 SIYFQ-PPSFY--------VSAQD----LP-HIENGGVAVLTGKKVVQLDVRD--NMVKLNDGSQITYEKCLIATGGT  143 (493)
T ss_dssp             ESBSS-CGGGS--------BCTTT----TT-TSTTCEEEEEETCCEEEEEGGG--TEEEETTSCEEEEEEEEECCCEE
T ss_pred             ccccc-chHhh--------cchhh----hh-hhhcCCeEEEcCCEEEEEECCC--CEEEECCCCEEECCEEEECCCCC
Confidence            00000 00000        01000    11 1234688999999999986443  35667788889999999999964

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.83  E-value=4.2e-05  Score=88.54  Aligned_cols=33  Identities=33%  Similarity=0.523  Sum_probs=31.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ++|||||| ||+|+++|..|++.|++|+|||+.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~  161 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERA  161 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            58999999 9999999999999999999999974

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.81  E-value=0.00015  Score=77.12  Aligned_cols=94  Identities=18%  Similarity=0.228  Sum_probs=70.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+|+|+.+....                  .++                      
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------~~~----------------------  223 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA------------------SMD----------------------  223 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS------------------SSC----------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc------------------ccC----------------------
Confidence            4799999 99999999999999999999998731100                  000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE--eCCeEEEEEc-----CCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT--YENAAVLLLA-----EGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~--~~~gv~v~~~-----~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+++.|++++.+++|+++..  +++.+.+.+.     +++++.+|.||.|+|.
T Consensus       224 ---------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~  285 (478)
T 1v59_A          224 ---------------GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR  285 (478)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCC
Confidence                           11224455666778999999999999976  4455666664     3467999999999995

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.77  E-value=0.00014  Score=76.40  Aligned_cols=95  Identities=17%  Similarity=0.242  Sum_probs=71.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++|+....-.                 ..++                      
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-----------------~~~~----------------------  190 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-----------------RVTA----------------------  190 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-----------------TTSC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-----------------chhh----------------------
Confidence            4699999 99999999999999999999998631000                 0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEE--eCCeE-EEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICT--YENAA-VLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~--~~~gv-~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+++.|++++.+++|+++..  +++.+ .|.+++|+++.+|.||.|+|.
T Consensus       191 ---------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~  248 (431)
T 1q1r_A          191 ---------------PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGL  248 (431)
T ss_dssp             ---------------HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCE
T ss_pred             ---------------HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCC
Confidence                           11223455566677999999999999975  34444 577778888999999999995

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.77  E-value=0.00016  Score=78.01  Aligned_cols=96  Identities=19%  Similarity=0.218  Sum_probs=74.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++|+....-                  ..++                      
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l------------------~~~~----------------------  254 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK------------------LIKD----------------------  254 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT------------------TCCS----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc------------------cccc----------------------
Confidence            4799999 9999999999999999999999872100                  0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe----EEEEEcCCe-EEEcCeEEEccCCCh
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA----AVLLLAEGK-ILSSHLIIDAMGNFS  261 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g----v~v~~~~G~-~i~a~lVV~AdG~~S  261 (535)
                                     ..+.+.+.+.+++.|++++.+++|+++..++++    +.|.+++|+ ++.||.||.|+|..+
T Consensus       255 ---------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p  316 (523)
T 1mo9_A          255 ---------------NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQP  316 (523)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEE
T ss_pred             ---------------HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCcc
Confidence                           112245666777889999999999999865555    667777777 899999999999643

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.77  E-value=7.9e-05  Score=77.71  Aligned_cols=96  Identities=18%  Similarity=0.226  Sum_probs=72.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++|+.+..-        ..   .+                   .         
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l--------~~---~~-------------------~---------  184 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL--------VR---VL-------------------G---------  184 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--------HH---HH-------------------C---------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc--------hh---hc-------------------C---------
Confidence            4799999 9999999999999999999999873110        00   00                   0         


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+++.|++++.+++|+++..++....|.+++|+++.||.||.|+|..
T Consensus       185 ---------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~  240 (410)
T 3ef6_A          185 ---------------RRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAE  240 (410)
T ss_dssp             ---------------HHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCe
Confidence                           01124455566677999999999999965443346778889999999999999953

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.00018  Score=76.61  Aligned_cols=94  Identities=16%  Similarity=0.192  Sum_probs=71.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++|+.+..-.                 . ++                      
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~d----------------------  225 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR-----------------K-FD----------------------  225 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT-----------------T-SC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc-----------------c-cC----------------------
Confidence            3699999 99999999999999999999998731000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCC-eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEG-KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v~v~~~~G-~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.++++  +.|.+++| +++.+|.||.|+|.
T Consensus       226 ---------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~  283 (479)
T 2hqm_A          226 ---------------ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGR  283 (479)
T ss_dssp             ---------------HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCC
Confidence                           011134455566679999999999999765555  67778888 78999999999994

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.75  E-value=0.00017  Score=76.49  Aligned_cols=96  Identities=19%  Similarity=0.279  Sum_probs=74.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      -+|+||| |..|+-+|..|++. |.+|+++|+......                 +.++                     
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~-----------------~~~~---------------------  201 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP-----------------GFTS---------------------  201 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST-----------------TTSC---------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc-----------------cccC---------------------
Confidence            4799999 99999999999999 999999998621000                 0000                     


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                      ..+.+.+.+.+.+.|++++.+++|++++.+++.+.+.+.+|+++.+|.||.|+|..
T Consensus       202 ----------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~  257 (472)
T 3iwa_A          202 ----------------KSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVS  257 (472)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEE
T ss_pred             ----------------HHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCC
Confidence                            11224566677788999999999999977667777888888899999999999953

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.75  E-value=0.00013  Score=76.98  Aligned_cols=94  Identities=18%  Similarity=0.224  Sum_probs=70.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ..+|+||| |++|+.+|..|++.|.+|+|+|+......                 ..++                     
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------~~~~---------------------  190 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG-----------------VYLD---------------------  190 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-----------------TTCC---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccc-----------------ccCC---------------------
Confidence            46899999 99999999999999999999998731100                 0000                     


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                      ..+.+.+.+.+.+.|++++.+++|+++..+ +.+ .+.+ +++++.+|.||.|+|.
T Consensus       191 ----------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~d~vi~a~G~  244 (447)
T 1nhp_A          191 ----------------KEFTDVLTEEMEANNITIATGETVERYEGD-GRVQKVVT-DKNAYDADLVVVAVGV  244 (447)
T ss_dssp             ----------------HHHHHHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEE-SSCEEECSEEEECSCE
T ss_pred             ----------------HHHHHHHHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE-CCCEEECCEEEECcCC
Confidence                            112345666777889999999999998644 443 3555 5678999999999995

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.74  E-value=0.0002  Score=74.55  Aligned_cols=91  Identities=21%  Similarity=0.341  Sum_probs=69.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+.+..-.                 ..++                      
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~~~~----------------------  186 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS-----------------RAAP----------------------  186 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----------------TTSC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-----------------cccC----------------------
Confidence            4799999 99999999999999999999998731000                 0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+++.|++++.+++|++++  ++  .|.+++|+++.+|.||.|+|.
T Consensus       187 ---------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~  237 (408)
T 2gqw_A          187 ---------------ATLADFVARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIGV  237 (408)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHHcCcEEEeCCEEEEEE--CC--EEEECCCCEEEcCEEEECcCC
Confidence                           1122445566677899999999999996  34  566778889999999999995

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.74  E-value=0.00023  Score=76.16  Aligned_cols=95  Identities=17%  Similarity=0.240  Sum_probs=74.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.++||| |..|+-+|..|++.|.+|+++|+.+..-.                 . ++                      
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~d----------------------  222 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP-----------------Y-ED----------------------  222 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC-----------------C-SS----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-----------------c-cC----------------------
Confidence            4799999 99999999999999999999998721000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+++.|++++.+++|++++.+++++.+.+.+|+++.+|.||.|+|..
T Consensus       223 ---------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~  278 (499)
T 1xdi_A          223 ---------------ADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSV  278 (499)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCC
Confidence                           11224566667788999999999999987666777877778889999999999953

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.73  E-value=0.00012  Score=75.70  Aligned_cols=101  Identities=20%  Similarity=0.130  Sum_probs=63.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .||||| |++|+++|..|++.|  .+|+|||++.....    ...   +..+ -.|.             ..+..+    
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~----~p~---~~~v-~~g~-------------~~~~~~----   58 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYT----CYM---SNEV-IGGD-------------RELASL----   58 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEEC----STT---HHHH-HHTS-------------SCGGGG----
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCC----ccC---HHHH-hcCC-------------CCHHHH----
Confidence            599999 999999999999876  58999998742111    000   0000 0011             111000    


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                          .        .+.        +.+.+.|++++.+ +|++|+  .+..++.+.+|.++.+|.+|+|+|..
T Consensus        59 ----~--------~~~--------~~~~~~gv~~i~~-~v~~id--~~~~~v~~~~g~~i~yd~LviAtG~~  107 (401)
T 3vrd_B           59 ----R--------VGY--------DGLRAHGIQVVHD-SALGID--PDKKLVKTAGGAEFAYDRCVVAPGID  107 (401)
T ss_dssp             ----E--------ECS--------HHHHHTTCEEECS-CEEEEE--TTTTEEEETTSCEEECSEEEECCCEE
T ss_pred             ----h--------hCH--------HHHHHCCCEEEEe-EEEEEE--ccCcEEEecccceeecceeeeccCCc
Confidence                0        000        1223468888754 788874  44445667788899999999999964

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.72  E-value=0.00011  Score=79.82  Aligned_cols=33  Identities=30%  Similarity=0.528  Sum_probs=31.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHH-CCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSF-KGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr-~G~~V~liEr~~  142 (535)
                      +||+|||| |.+|+.+|..|++ .|.+|+|||++.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~   36 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGV   36 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCC
Confidence            59999999 9999999999999 699999999974

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.67  E-value=0.00027  Score=74.53  Aligned_cols=94  Identities=20%  Similarity=0.081  Sum_probs=72.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.++||| |..|+-+|..|++.|.+|+++|+.+....                 ..++                      
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~~~d----------------------  188 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLP-----------------KYFD----------------------  188 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----------------TTCC----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccc-----------------ccCC----------------------
Confidence            4699999 99999999999999999999998731000                 0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+++.|++++.+++|++++..++++.|.+++| ++.||.||.|+|.
T Consensus       189 ---------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~  242 (452)
T 3oc4_A          189 ---------------KEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNL  242 (452)
T ss_dssp             ---------------HHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCC
T ss_pred             ---------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCC
Confidence                           11224566667778999999999999987677777777666 8999999999995

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.65  E-value=0.0002  Score=76.23  Aligned_cols=95  Identities=17%  Similarity=0.159  Sum_probs=72.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+.+..-.                 . ++                      
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-----------------~-~~----------------------  225 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-----------------G-AD----------------------  225 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-----------------T-SC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc-----------------c-cC----------------------
Confidence            4799999 99999999999999999999998731000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC----CeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE----GKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~----G~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.+    |+++.+|.||.|+|..
T Consensus       226 ---------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~  285 (482)
T 1ojt_A          226 ---------------RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRA  285 (482)
T ss_dssp             ---------------HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEE
T ss_pred             ---------------HHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCC
Confidence                           0111345555667799999999999998777777777766    6679999999999953

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.65  E-value=0.00031  Score=75.21  Aligned_cols=94  Identities=16%  Similarity=0.193  Sum_probs=72.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+|+|+.+..-.                 . ++                      
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~d----------------------  216 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-----------------K-FD----------------------  216 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-----------------T-SC----------------------
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-----------------c-cc----------------------
Confidence            3799999 99999999999999999999998621000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCCeE-EEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEGKI-LSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G~~-i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|+++..++++ +.+.+++|++ +.+|.||.|+|.
T Consensus       217 ---------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~  273 (500)
T 1onf_A          217 ---------------ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGR  273 (500)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCB
T ss_pred             ---------------hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCC
Confidence                           011134556667789999999999999765443 6777878877 999999999995

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.65  E-value=0.00037  Score=73.51  Aligned_cols=95  Identities=18%  Similarity=0.259  Sum_probs=70.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+....-.                 ..++                      
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~~~~----------------------  190 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY-----------------KYFD----------------------  190 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT-----------------TTSC----------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh-----------------hhhh----------------------
Confidence            3699999 99999999999999999999998721000                 0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+++.|++++.+++|+++..+++++.....+|+++.+|.||.|+|.
T Consensus       191 ---------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~  245 (452)
T 2cdu_A          191 ---------------KEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGF  245 (452)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             ---------------hhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCC
Confidence                           1122445666778899999999999997656666422337888999999999994

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.64  E-value=0.00021  Score=75.14  Aligned_cols=108  Identities=17%  Similarity=0.070  Sum_probs=65.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKG--LRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .||||| |++|+++|..|++.|  .+|+|||++......++      .+..+              +........     
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~------~l~~~--------------~~~~~~~~~-----   56 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC------ALPYV--------------IGEVVEDRR-----   56 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG------GHHHH--------------HTTSSCCGG-----
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc------hhHHH--------------HcCCccchh-----
Confidence            499999 999999999999998  57999999742221111      11111              000000000     


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CCeEEEcCeEEEccCCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EGKILSSHLIIDAMGNF  260 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G~~i~a~lVV~AdG~~  260 (535)
                        .       .....+..    +   ..+.+++++.+++|+.+..+...+.+...   ++.++.+|.+|+|+|..
T Consensus        57 --~-------~~~~~~~~----~---~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~  115 (437)
T 4eqs_A           57 --Y-------ALAYTPEK----F---YDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGAS  115 (437)
T ss_dssp             --G-------TBCCCHHH----H---HHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEE
T ss_pred             --h-------hhhcCHHH----H---HHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCc
Confidence              0       00011111    1   23458999999999998655555555442   23468999999999964

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.63  E-value=0.0003  Score=75.11  Aligned_cols=94  Identities=15%  Similarity=0.207  Sum_probs=73.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC---CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~---G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      -.++||| |..|+-+|..|++.   |.+|+|+|+.+..-.                 . ++                   
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-----------------~-~d-------------------  230 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-----------------G-FD-------------------  230 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-----------------T-SC-------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc-----------------c-cC-------------------
Confidence            4799999 99999999999999   999999998731000                 0 00                   


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCeEEEcCeEEEccCC
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                        ..+.+.+.+.+.+.|++++.+++|+++..+++ .+.|.+++|+++.+|.||.|+|.
T Consensus       231 ------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~  286 (490)
T 1fec_A          231 ------------------SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  286 (490)
T ss_dssp             ------------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             ------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCC
Confidence                              01224566667788999999999999976654 36778878888999999999995

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.63  E-value=0.00043  Score=73.35  Aligned_cols=94  Identities=14%  Similarity=0.193  Sum_probs=70.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+.+..-.                 . ++                      
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~d----------------------  214 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-----------------T-LD----------------------  214 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----------------T-SC----------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc-----------------c-CC----------------------
Confidence            4799999 99999999999999999999998721000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHH-HhCCCEEEeCceEEEEEEeCCeEEEEEc--CC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRF-ISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a-~~~G~~i~~~~~V~~i~~~~~gv~v~~~--~G--~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+ .+.|++++.+++|++++.+++++.+.+.  +|  +++.+|.||.|+|.
T Consensus       215 ---------------~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~  274 (468)
T 2qae_A          215 ---------------EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGR  274 (468)
T ss_dssp             ---------------HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCc
Confidence                           11224456666 7789999999999999876666777765  56  67999999999995

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.62  E-value=0.00036  Score=74.00  Aligned_cols=95  Identities=13%  Similarity=0.182  Sum_probs=71.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+|+|+.+.... +                .++                      
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~----------------~~~----------------------  219 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG-V----------------GID----------------------  219 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC-S----------------SCC----------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC-c----------------ccC----------------------
Confidence            4799999 99999999999999999999998731000 0                000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEE-----cCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLL-----AEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~-----~~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+++.|++++.+++|+++..++++ +.+++     .+++++.+|.||.|+|.
T Consensus       220 ---------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~  280 (474)
T 1zmd_A          220 ---------------MEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGR  280 (474)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCC
Confidence                           112244556667789999999999999876655 66664     34578999999999994

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.62  E-value=0.00036  Score=74.63  Aligned_cols=94  Identities=22%  Similarity=0.314  Sum_probs=72.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC---CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~---G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      -.|+||| |..|+-+|..|++.   |.+|+|+|+.+..-.                 . ++                   
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-----------------~-~d-------------------  234 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR-----------------G-FD-------------------  234 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT-----------------T-SC-------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc-----------------c-cC-------------------
Confidence            3799999 99999999999999   999999998621000                 0 00                   


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCeEEEcCeEEEccCC
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                        ..+.+.+.+.+.+.|++++.+++|+++..+++ .+.|.+.+|+++.+|.||.|+|.
T Consensus       235 ------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~  290 (495)
T 2wpf_A          235 ------------------ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGR  290 (495)
T ss_dssp             ------------------HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             ------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCC
Confidence                              01124455666778999999999999976654 36777888888999999999994

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.62  E-value=0.00041  Score=73.38  Aligned_cols=94  Identities=24%  Similarity=0.340  Sum_probs=70.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+.+..-.                 . ++                      
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~~----------------------  211 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-----------------N-ED----------------------  211 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----------------T-SC----------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-----------------c-cC----------------------
Confidence            4799999 99999999999999999999998731000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~-~G--~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|+++..+++++.+.+. +|  +++.+|.||.|+|.
T Consensus       212 ---------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~  269 (464)
T 2a8x_A          212 ---------------ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGF  269 (464)
T ss_dssp             ---------------HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCC
Confidence                           011133455566679999999999999766666777764 56  67999999999994

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.62  E-value=0.00046  Score=73.06  Aligned_cols=93  Identities=22%  Similarity=0.218  Sum_probs=72.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++|+..   .  .          +   . ++                      
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~---~--~----------l---~-~~----------------------  215 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNT---L--F----------F---R-ED----------------------  215 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC---T--T----------T---T-SC----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECC---c--c----------C---C-CC----------------------
Confidence            3699999 9999999999999999999999862   1  0          0   0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+.+.|++++.+++|+++..+++.+.+.++ +.++.+|.||.|+|..
T Consensus       216 ---------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~  270 (467)
T 1zk7_A          216 ---------------PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRT  270 (467)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEE
T ss_pred             ---------------HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCC
Confidence                           112245666677889999999999999877666667764 5689999999999954

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.61  E-value=0.00039  Score=74.35  Aligned_cols=95  Identities=21%  Similarity=0.213  Sum_probs=72.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHH----CCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          111 FDVIVCG-GTLGIFIATALSF----KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr----~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      -.|+||| |..|+-+|..|++    .|.+|+++++......                 ..++                  
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~-----------------~~l~------------------  225 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-----------------KILP------------------  225 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-----------------TTSC------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc-----------------ccCC------------------
Confidence            3699999 9999999999987    4789999987621000                 0000                  


Q ss_pred             ccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          186 FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       186 ~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                         ..+.+.+.+.+++.|++++.+++|+++..+++.+.|.+.+|+++.||.||.|.|.
T Consensus       226 -------------------~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~  280 (493)
T 1m6i_A          226 -------------------EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  280 (493)
T ss_dssp             -------------------HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             -------------------HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCC
Confidence                               1122445566777899999999999998766777788888989999999999995

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.59  E-value=0.00046  Score=74.81  Aligned_cols=95  Identities=19%  Similarity=0.292  Sum_probs=73.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |..|+-+|..|++.|.+|+++|+.+....                 . ++                       
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~~-----------------------  191 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT-----------------P-VD-----------------------  191 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT-----------------T-SC-----------------------
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch-----------------h-cC-----------------------
Confidence            799999 99999999999999999999998731000                 0 00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-------------------CCeEEEEEcCCeEEEcC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-------------------ENAAVLLLAEGKILSSH  251 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~-------------------~~gv~v~~~~G~~i~a~  251 (535)
                                    ..+.+.+.+.+.+.|++++.+++|+++..+                   ++++.+.+.+|+++.||
T Consensus       192 --------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D  257 (565)
T 3ntd_A          192 --------------REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETD  257 (565)
T ss_dssp             --------------HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEES
T ss_pred             --------------HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcC
Confidence                          011244555667789999999999999763                   55677777788899999


Q ss_pred             eEEEccCCCh
Q 009427          252 LIIDAMGNFS  261 (535)
Q Consensus       252 lVV~AdG~~S  261 (535)
                      .||.|+|...
T Consensus       258 ~vi~a~G~~p  267 (565)
T 3ntd_A          258 LLIMAIGVRP  267 (565)
T ss_dssp             EEEECSCEEE
T ss_pred             EEEECcCCcc
Confidence            9999999754

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.54  E-value=6e-05  Score=78.40  Aligned_cols=34  Identities=35%  Similarity=0.636  Sum_probs=31.8

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~  142 (535)
                      +++||+||| |++|+++|+.|+++ |++|+|+|++.
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~   41 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP   41 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            368999999 99999999999999 99999999984

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.53  E-value=0.00065  Score=72.25  Aligned_cols=93  Identities=20%  Similarity=0.247  Sum_probs=69.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |+.|+.+|..|++.|.+|+|+|+.+...                  ..++                      
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------------~~~~----------------------  226 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIG------------------TIYD----------------------  226 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTT------------------SSSC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchh------------------hcCC----------------------
Confidence            5799999 9999999999999999999999872100                  0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                     ..+.+.+.+.+++.|++++.+++|+++..+ +++ .+.+ ++.++.+|.||.|+|..
T Consensus       227 ---------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~D~vi~a~G~~  281 (480)
T 3cgb_A          227 ---------------GDMAEYIYKEADKHHIEILTNENVKAFKGN-ERVEAVET-DKGTYKADLVLVSVGVK  281 (480)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SBEEEEEE-TTEEEECSEEEECSCEE
T ss_pred             ---------------HHHHHHHHHHHHHcCcEEEcCCEEEEEEcC-CcEEEEEE-CCCEEEcCEEEECcCCC
Confidence                           112245666677889999999999999754 444 3444 45689999999999953

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.53  E-value=0.00075  Score=71.95  Aligned_cols=94  Identities=19%  Similarity=0.281  Sum_probs=72.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+.+....                 .+ +                      
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~~-d----------------------  238 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG-----------------GM-D----------------------  238 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS-----------------SS-C----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc-----------------cC-C----------------------
Confidence            3699999 99999999999999999999998731000                 00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC---C--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE---G--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~---G--~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.+   |  +++.+|.||.|+|.
T Consensus       239 ---------------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~  298 (491)
T 3urh_A          239 ---------------GEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR  298 (491)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC
T ss_pred             ---------------HHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC
Confidence                           1122445566677899999999999998888887777653   4  57999999999994

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.53  E-value=8.1e-05  Score=77.56  Aligned_cols=42  Identities=7%  Similarity=-0.008  Sum_probs=35.3

Q ss_pred             CCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       218 ~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                      .+.+++.+++|++|..++++++|++.+|+ ++||.||.|.+..
T Consensus       216 l~~~v~~~~~V~~i~~~~~~v~v~~~~g~-~~ad~Vv~a~~~~  257 (424)
T 2b9w_A          216 LEHPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLE  257 (424)
T ss_dssp             SSSCCBCSCCEEEEECCTTCEEEEESSCE-EEESEEEECSCHH
T ss_pred             hcceEEcCCEEEEEEEECCEEEEEECCCe-EEcCEEEECCCHH
Confidence            35678899999999887788888887665 8999999999964

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.53  E-value=0.00075  Score=72.99  Aligned_cols=92  Identities=14%  Similarity=0.184  Sum_probs=74.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .++||| |+.|+-.|..+++.|.+|+|+++...-.                  + ++.                      
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~------------------~-~D~----------------------  263 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR------------------G-FDQ----------------------  263 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST------------------T-SCH----------------------
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc------------------c-cch----------------------
Confidence            699999 9999999999999999999998752111                  0 010                      


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     .+.+.+.+.+++.|+.++.++.+..+...++.+.+.+.++.++.+|.|+.|.|.
T Consensus       264 ---------------ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR  317 (542)
T 4b1b_A          264 ---------------QCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGR  317 (542)
T ss_dssp             ---------------HHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCE
T ss_pred             ---------------hHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccc
Confidence                           111345566677899999999999999989999999888888999999999994

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.52  E-value=7.8e-05  Score=77.48  Aligned_cols=34  Identities=38%  Similarity=0.618  Sum_probs=32.0

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .++||+||| |++|+++|+.|+++|.+|+|+|+..
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~   62 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRP   62 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccC
Confidence            469999999 9999999999999999999999974

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.52  E-value=7.5e-05  Score=79.45  Aligned_cols=52  Identities=15%  Similarity=0.199  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---eEEEcCeEEEccCC
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGN  259 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G---~~i~a~lVV~AdG~  259 (535)
                      .+.+.|.+.+.+  ++|+.+++|++|..++++++|++.+|   ++++||.||.|...
T Consensus       240 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~  294 (489)
T 2jae_A          240 RIYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPP  294 (489)
T ss_dssp             HHHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCH
T ss_pred             HHHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCH
Confidence            466666665532  67999999999999999999888776   67999999999974

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.52  E-value=0.00028  Score=74.61  Aligned_cols=92  Identities=22%  Similarity=0.247  Sum_probs=67.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |++|+.+|..|++.|.+|+|+|+.+....                 . ++                      
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~~----------------------  211 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-----------------T-YD----------------------  211 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-----------------T-SC----------------------
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-----------------c-cC----------------------
Confidence            4799999 99999999999999999999998731100                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.  +++.++..+|  .++.+|.||.|+|.
T Consensus       212 ---------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~v~v~~~~G~~~~i~~D~vv~a~G~  266 (458)
T 1lvl_A          212 ---------------SELTAPVAESLKKLGIALHLGHSVEGYEN--GCLLANDGKGGQLRLEADRVLVAVGR  266 (458)
T ss_dssp             ---------------HHHHHHHHHHHHHHTCEEETTCEEEEEET--TEEEEECSSSCCCEECCSCEEECCCE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEECCEEEEEEe--CCEEEEECCCceEEEECCEEEECcCC
Confidence                           01113345556667999999999999864  4455554356  58999999999995

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.51  E-value=0.00034  Score=74.05  Aligned_cols=94  Identities=17%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+|+|+.+....                 . ++                      
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-----------------~-~~----------------------  217 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-----------------T-MD----------------------  217 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-----------------T-SC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-----------------c-cc----------------------
Confidence            4799999 99999999999999999999998731000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G--~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|+++..+++++.+.+.   +|  +++.+|.||.|+|.
T Consensus       218 ---------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~  277 (470)
T 1dxl_A          218 ---------------AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGR  277 (470)
T ss_dssp             ---------------HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCE
T ss_pred             ---------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCC
Confidence                           012244556667789999999999999765555666654   44  67999999999995

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.49  E-value=0.00079  Score=66.84  Aligned_cols=92  Identities=16%  Similarity=0.130  Sum_probs=67.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++++......                    +                      
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------------------~----------------------  183 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA--------------------E----------------------  183 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC--------------------C----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc--------------------C----------------------
Confidence            4699999 99999999999999999999998621000                    0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcC----C--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAE----G--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~----G--~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|+++..+++++. |.+.+    |  .++.+|.||.|+|.
T Consensus       184 ---------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~  245 (320)
T 1trb_A          184 ---------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH  245 (320)
T ss_dssp             ---------------HHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCE
T ss_pred             ---------------HHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCC
Confidence                           01113455566678999999999999976654432 44433    4  57999999999994

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.48  E-value=0.00087  Score=71.05  Aligned_cols=94  Identities=17%  Similarity=0.176  Sum_probs=72.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+++|+.+..-.                 . ++                      
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~~----------------------  220 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-----------------A-VD----------------------  220 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----------------T-SC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-----------------c-cC----------------------
Confidence            4699999 99999999999999999999998631000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G---~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.+++++.+.+.++   +++.+|.||.|+|.
T Consensus       221 ---------------~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~  278 (476)
T 3lad_A          221 ---------------EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGR  278 (476)
T ss_dssp             ---------------HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCC
Confidence                           11224455666778999999999999987777777777654   67999999999994

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.48  E-value=0.00012  Score=78.54  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +..||||| |++|+.+|..|++.+++|+|||+++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            56899999 9999999999999999999999873

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.47  E-value=0.0001  Score=76.09  Aligned_cols=32  Identities=28%  Similarity=0.499  Sum_probs=31.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .+||+||| |++|+++|+.|+++|++|+|+|+.
T Consensus        44 ~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            58999999 999999999999999999999997

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.47  E-value=0.00011  Score=77.30  Aligned_cols=58  Identities=16%  Similarity=0.127  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                      ..+.+.|.+.+.+.|++++.+++|++|..++++++....+|+++.||.||.|.|.++.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence            4688888888888899999999999998888777643457888999999999998864

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.45  E-value=0.00089  Score=70.80  Aligned_cols=93  Identities=13%  Similarity=0.193  Sum_probs=72.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.++||| |..|+-+|..|++.|.+|.++++.+..-.                 .+ +                      
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~-----------------~~-~----------------------  210 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS-----------------RF-D----------------------  210 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----------------TS-C----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-----------------cc-C----------------------
Confidence            4799999 99999999999999999999998731000                 00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEE-EcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLL-LAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~-~~~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+++.|++++.+++|++++.++++ +.|. +++|+ +.+|.||.|+|.
T Consensus       211 ---------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~  266 (463)
T 4dna_A          211 ---------------QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGR  266 (463)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCc
Confidence                           112245666777889999999999999876565 5677 77787 999999999995

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.45  E-value=0.0016  Score=68.60  Aligned_cols=131  Identities=11%  Similarity=0.116  Sum_probs=74.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCC-CCc-ccc--c-ccHHHHHHHHHcCCCChHhHHHHHhhhcCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLK-GRE-QEW--N-ISRKELLELVESGILVEDDIDEATATKFNP  181 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~-~~~-~~~--~-is~~~l~~L~~lGl~~~~~~~~~~~~~~~~  181 (535)
                      .-.|+||| |.+|+-+|..|++.  |.+|.+++|...- ... ..+  . ..+...+.+..+   +.+. ...+......
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l---~~~~-~~~~~~~~~~  302 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSR---EHAE-RERLLREYHN  302 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHS---CHHH-HHHHHHHTGG
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcC---CHHH-HHHHHHHhhc
Confidence            35799999 99999999999999  9999999997421 110 000  0 111111112111   1111 1111111000


Q ss_pred             CcccccccCcceeeeccccccCHH---HHHHH-HHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEc---CCe--EEEcC
Q 009427          182 NRCGFEGKGEIWVEDILNLGVSPA---KLIEI-VKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSH  251 (535)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~v~~~---~l~~~-L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~v~~~---~G~--~i~a~  251 (535)
                        .       .|      ..++..   .+.+. ..+++.. .|++++.+++|+++..+++++.+++.   +|+  ++.+|
T Consensus       303 --~-------~~------~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D  367 (463)
T 3s5w_A          303 --T-------NY------SVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYD  367 (463)
T ss_dssp             --G-------TS------SCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEES
T ss_pred             --c-------CC------CcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECC
Confidence              0       00      011111   11122 2233332 58999999999999888888888775   564  49999


Q ss_pred             eEEEccCC
Q 009427          252 LIIDAMGN  259 (535)
Q Consensus       252 lVV~AdG~  259 (535)
                      .||.|+|.
T Consensus       368 ~Vv~AtG~  375 (463)
T 3s5w_A          368 AVILATGY  375 (463)
T ss_dssp             EEEECCCE
T ss_pred             EEEEeeCC
Confidence            99999994

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.43  E-value=0.00068  Score=72.29  Aligned_cols=93  Identities=20%  Similarity=0.270  Sum_probs=68.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+.+..-.                 ..++                      
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~~~~----------------------  235 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA-----------------GYYD----------------------  235 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-----------------TTSC----------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh-----------------hHHH----------------------
Confidence            4699999 99999999999999999999998731000                 0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+++.|++++.+++|+++.. ++.+ .+.+ +|+++.+|.||.|+|.
T Consensus       236 ---------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~-~g~~i~~D~Vi~a~G~  289 (490)
T 2bc0_A          236 ---------------RDLTDLMAKNMEEHGIQLAFGETVKEVAG-NGKVEKIIT-DKNEYDVDMVILAVGF  289 (490)
T ss_dssp             ---------------HHHHHHHHHHHHTTTCEEEETCCEEEEEC-SSSCCEEEE-SSCEEECSEEEECCCE
T ss_pred             ---------------HHHHHHHHHHHHhCCeEEEeCCEEEEEEc-CCcEEEEEE-CCcEEECCEEEECCCC
Confidence                           11224455666778999999999999964 3333 3455 6788999999999994

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.43  E-value=0.0011  Score=70.80  Aligned_cols=93  Identities=23%  Similarity=0.228  Sum_probs=70.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++|+.+...                  ..++                      
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l------------------~~~d----------------------  214 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVA------------------NLQD----------------------  214 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCT------------------TCCC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc------------------ccCC----------------------
Confidence            4799999 9999999999999999999999873110                  0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc--CC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA--EG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~--~G--~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+. ++++.+++|++++.+++++.+.+.  +|  .++.+|.||.|+|.
T Consensus       215 ---------------~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~  272 (492)
T 3ic9_A          215 ---------------EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR  272 (492)
T ss_dssp             ---------------HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCC
T ss_pred             ---------------HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCC
Confidence                           01113344455555 999999999999877777877774  67  67999999999995

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.42  E-value=9.2e-05  Score=79.53  Aligned_cols=40  Identities=13%  Similarity=0.156  Sum_probs=34.9

Q ss_pred             CEEEeCceEEEEEEe-CCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          220 GVIFEGYSVSSICTY-ENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       220 ~~i~~~~~V~~i~~~-~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      ++|+.+++|++|..+ ++++.|++.+|++++||.||.|.+.
T Consensus       215 ~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~  255 (516)
T 1rsg_A          215 NWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQ  255 (516)
T ss_dssp             GGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCH
T ss_pred             CEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCH
Confidence            569999999999876 5678898888888999999999974

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.40  E-value=9.3e-05  Score=76.07  Aligned_cols=32  Identities=28%  Similarity=0.549  Sum_probs=30.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +||+||| |++|+++|+.|+++|++|+|+|++.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   34 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            7999999 9999999999999999999999974

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.40  E-value=7.4e-05  Score=80.34  Aligned_cols=34  Identities=29%  Similarity=0.524  Sum_probs=30.9

Q ss_pred             CcccEEEEc-chHHHHHHHHHHH-CCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSF-KGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr-~G~~V~liEr~~  142 (535)
                      ++||+|||| |++|+.+|..|++ .|++|+|||++.
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~   51 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGE   51 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSB
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence            379999999 9999999999998 689999999983

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.39  E-value=0.001  Score=67.54  Aligned_cols=102  Identities=17%  Similarity=0.087  Sum_probs=70.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |.+|+-+|..|++.|.+|+++++......                              ..+.+. .     
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~------------------------------~~~d~~-~-----  210 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLND------------------------------PDADPS-V-----  210 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------------------------------------CT-T-----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCC------------------------------CCCCCC-c-----
Confidence            3799999 99999999999999999999998621000                              000000 0     


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeEEE-cCeEEEccCCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKILS-SHLIIDAMGNF  260 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~-a~lVV~AdG~~  260 (535)
                                 .+ +..+.+.+.+.+.+.| ++++.+++|+++..+++++.+.+.+|+++. +|.||.|+|..
T Consensus       211 -----------~~-~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~  271 (369)
T 3d1c_A          211 -----------RL-SPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFD  271 (369)
T ss_dssp             -----------SC-CHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBC
T ss_pred             -----------cC-CHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccC
Confidence                       00 1122244555566776 999999999999767777778888886664 69999999953

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.38  E-value=0.00011  Score=80.82  Aligned_cols=37  Identities=27%  Similarity=0.499  Sum_probs=33.7

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      .+||||||| |++|+++|+.|++.|++|+|||+....+
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            369999999 9999999999999999999999987655

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.38  E-value=0.00011  Score=79.70  Aligned_cols=34  Identities=38%  Similarity=0.587  Sum_probs=32.2

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .+||+|||| |++|+++|..|++.|++|+|||++.
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~   40 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   40 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            369999999 9999999999999999999999985

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.37  E-value=0.00012  Score=78.19  Aligned_cols=34  Identities=32%  Similarity=0.431  Sum_probs=32.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      .+||+||| |++|+++|+.|+++|++|+|+|+...
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~   47 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   47 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence            58999999 99999999999999999999999853

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.32  E-value=0.00077  Score=69.12  Aligned_cols=88  Identities=25%  Similarity=0.379  Sum_probs=66.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+++|+.+..               +   . ++                      
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~---------------l---~-~~----------------------  182 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF---------------L---G-LD----------------------  182 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC---------------T---T-CC----------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee---------------c---c-CC----------------------
Confidence            3799999 999999999999999999999987310               0   0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+++.|++++.+++|++++  .++  +.+++|+ +.+|.||.|+|.
T Consensus       183 ---------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~--~~~--v~~~~g~-i~~D~vi~a~G~  232 (367)
T 1xhc_A          183 ---------------EELSNMIKDMLEETGVKFFLNSELLEAN--EEG--VLTNSGF-IEGKVKICAIGI  232 (367)
T ss_dssp             ---------------HHHHHHHHHHHHHTTEEEECSCCEEEEC--SSE--EEETTEE-EECSCEEEECCE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEcCCEEEEEE--eeE--EEECCCE-EEcCEEEECcCC
Confidence                           0112445566677899999999999985  333  4566777 999999999994

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.28  E-value=0.0015  Score=69.41  Aligned_cols=93  Identities=16%  Similarity=0.157  Sum_probs=69.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.++||| |..|+-+|..|++.|.+|+++++..+..                  .+ +                      
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~------------------~~-d----------------------  226 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLR------------------GF-D----------------------  226 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSST------------------TS-C----------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc------------------cc-C----------------------
Confidence            3699999 9999999999999999999998752110                  00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe-EEEEEcCC-----eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA-AVLLLAEG-----KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g-v~v~~~~G-----~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.++++ +.|.+.++     .++.+|.||.|+|.
T Consensus       227 ---------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~  287 (483)
T 3dgh_A          227 ---------------QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGR  287 (483)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECccc
Confidence                           011234555667789999999999999775553 56666543     27999999999994

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.27  E-value=0.002  Score=68.27  Aligned_cols=94  Identities=15%  Similarity=0.154  Sum_probs=70.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++++.+..-.                 . ++                      
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~d----------------------  227 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-----------------S-FD----------------------  227 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-----------------T-SC----------------------
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc-----------------c-cC----------------------
Confidence            3699999 99999999999999999999998621000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcC-------CeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAE-------GKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v~v~~~~-------G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.++++  +.+.+.+       |.++.+|.||.|+|.
T Consensus       228 ---------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~  291 (478)
T 3dk9_A          228 ---------------SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR  291 (478)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc
Confidence                           011234555667789999999999999876665  5566654       257999999999994

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.26  E-value=0.0012  Score=65.94  Aligned_cols=88  Identities=18%  Similarity=0.049  Sum_probs=65.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|.++++.....                     .                      
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~---------------------~----------------------  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLR---------------------A----------------------  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---------------------S----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccC---------------------C----------------------
Confidence            4699999 9999999999999999999999862100                     0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEcC-----CeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAE-----GKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~-v~~~~-----G~~i~a~lVV~AdG~  259 (535)
                                        .+.+.+++.+. |++++.+++|+++..+++++. |.+.+     +.++.+|.||.|+|.
T Consensus       211 ------------------~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  269 (338)
T 3itj_A          211 ------------------STIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGH  269 (338)
T ss_dssp             ------------------CHHHHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCE
T ss_pred             ------------------CHHHHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCC
Confidence                              01233444454 899999999999977655433 44443     357999999999994

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.22  E-value=0.0017  Score=70.89  Aligned_cols=94  Identities=17%  Similarity=0.230  Sum_probs=70.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++|+......                 . ++                      
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------~-~~----------------------  227 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP-----------------P-ID----------------------  227 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-----------------T-SC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc-----------------c-CC----------------------
Confidence            3699999 99999999999999999999998631000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                                     ..+.+.+.+.+.+.|++++.+++|++++.++++  |.+.+|+++.+|.||.|+|...
T Consensus       228 ---------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~g~~i~~D~Vi~a~G~~p  282 (588)
T 3ics_A          228 ---------------YEMAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLKSGSVIQTDMLILAIGVQP  282 (588)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEETTSCEEECSEEEECSCEEE
T ss_pred             ---------------HHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEECCCCEEEcCEEEEccCCCC
Confidence                           111244556667789999999999998654343  5567888999999999999754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.21  E-value=0.00028  Score=74.77  Aligned_cols=33  Identities=33%  Similarity=0.462  Sum_probs=31.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .+||+||| ||+|+++|..|++.|++|+|+|+..
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~  155 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYD  155 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999 9999999999999999999999975

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.19  E-value=0.00027  Score=75.35  Aligned_cols=51  Identities=10%  Similarity=0.079  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCe----EEEcCeEEEccCC
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGK----ILSSHLIIDAMGN  259 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~----~i~a~lVV~AdG~  259 (535)
                      .+.+.|.+.+.   .+|+.+++|++|..+++++.|++.+|+    +++||.||.|.+.
T Consensus       242 ~l~~~l~~~l~---~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~  296 (498)
T 2iid_A          242 KLPTAMYRDIQ---DKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTS  296 (498)
T ss_dssp             HHHHHHHHHTG---GGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCH
T ss_pred             HHHHHHHHhcc---cccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCCh
Confidence            34444544432   278999999999988888888876653    5899999999985

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.15  E-value=0.0036  Score=66.58  Aligned_cols=92  Identities=20%  Similarity=0.246  Sum_probs=67.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |..|+-+|..|++.|.+|+++++..+..                  . ++                       
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~------------------~-~d-----------------------  224 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR------------------G-FD-----------------------  224 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST------------------T-SC-----------------------
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc------------------c-CC-----------------------
Confidence            699999 9999999999999999999999752110                  0 00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcC---Ce--EEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAE---GK--ILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~---G~--~i~a~lVV~AdG~  259 (535)
                                    ..+.+.+.+.+.+.|++++.++.++++...++ .+.+.+.+   |+  ++.+|.||.|+|.
T Consensus       225 --------------~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~  285 (488)
T 3dgz_A          225 --------------QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGR  285 (488)
T ss_dssp             --------------HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCE
T ss_pred             --------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccC
Confidence                          01123455566778999999999999976443 45565543   54  4799999999994

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.12  E-value=0.0028  Score=63.31  Aligned_cols=92  Identities=14%  Similarity=0.100  Sum_probs=66.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|.++++.+....                    ..                     
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~--------------------~~---------------------  191 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA--------------------HE---------------------  191 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS--------------------CH---------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc--------------------cH---------------------
Confidence            4799999 99999999999999999999998731000                    00                     


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G--~~i~a~lVV~AdG~  259 (535)
                                      .+.+.+.+.+.+.|++++.+++|+++..+++...|.+.   +|  .++.+|.||.|+|.
T Consensus       192 ----------------~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (335)
T 2zbw_A          192 ----------------ASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGY  250 (335)
T ss_dssp             ----------------HHHHHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             ----------------HHHHHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecC
Confidence                            00123445556679999999999999764332234443   56  57999999999994

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.11  E-value=0.00033  Score=72.39  Aligned_cols=33  Identities=27%  Similarity=0.520  Sum_probs=31.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ++||+||| |++|+++|+.|+++|++|+|+|++.
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~   36 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   36 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            47999999 9999999999999999999999974

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.10  E-value=0.00041  Score=74.01  Aligned_cols=33  Identities=27%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~  142 (535)
                      .+||+||| |++|+++|+.|+++| .+|+|+|+..
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~   43 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND   43 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence            58999999 999999999999999 7999999984

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.08  E-value=0.00021  Score=77.37  Aligned_cols=33  Identities=36%  Similarity=0.640  Sum_probs=31.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      +||+|||| |++|+.+|..|++ |.+|+|||++..
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            69999999 9999999999999 999999999853

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.07  E-value=0.0022  Score=67.42  Aligned_cols=93  Identities=19%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |..|+-+|..|++.|.+|+++|+.+....                 ..++                      
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----------------~~~~----------------------  189 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR-----------------RSFD----------------------  189 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-----------------TTSC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch-----------------hhcC----------------------
Confidence            3799999 99999999999999999999998731000                 0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                     ..+.+.+.+.+.+. ++++.++.|+++..++ ++.....+++++.+|.||.|+|.
T Consensus       190 ---------------~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~~i~~D~Vv~a~G~  242 (449)
T 3kd9_A          190 ---------------KEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAGEYKAELVILATGI  242 (449)
T ss_dssp             ---------------HHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTEEEECSEEEECSCE
T ss_pred             ---------------HHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCCEEECCEEEEeeCC
Confidence                           11224455556666 9999999999986433 44333447788999999999994

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.06  E-value=0.0049  Score=60.79  Aligned_cols=88  Identities=17%  Similarity=0.055  Sum_probs=64.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++++.....                   . +                      
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------------------~-~----------------------  181 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR-------------------C-A----------------------  181 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC-------------------S-C----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC-------------------C-C----------------------
Confidence            4799999 9999999999999999999999862100                   0 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHH-hCCCEEEeCceEEEEEEeCCeE-EEEEc---CCe--EEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFI-SLGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~-~~G~~i~~~~~V~~i~~~~~gv-~v~~~---~G~--~i~a~lVV~AdG~  259 (535)
                                         ..+.+++. +.|++++.+++++++..+++++ .+.+.   +|+  ++.+|.||.|+|.
T Consensus       182 -------------------~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  239 (311)
T 2q0l_A          182 -------------------PITLEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGY  239 (311)
T ss_dssp             -------------------HHHHHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             -------------------HHHHHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecC
Confidence                               00122233 3589999999999997765543 34443   564  7899999999994

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.05  E-value=0.0021  Score=65.08  Aligned_cols=92  Identities=15%  Similarity=0.111  Sum_probs=66.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++++......                  .  .+                    
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~------------------~--~~--------------------  203 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG------------------H--GK--------------------  203 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS------------------C--SH--------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC------------------C--HH--------------------
Confidence            3699999 99999999999999999999998731100                  0  00                    


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEE--cCC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLL--AEG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~--~~G--~~i~a~lVV~AdG~  259 (535)
                                       +.+.+.+...+.|++++.+++|+++..+++.+ .|.+  .+|  .++.+|.||.|+|.
T Consensus       204 -----------------~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~  261 (360)
T 3ab1_A          204 -----------------TAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGF  261 (360)
T ss_dssp             -----------------HHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCB
T ss_pred             -----------------HHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCC
Confidence                             00123334456789999999999998766643 2333  366  57999999999994

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.01  E-value=0.00054  Score=72.57  Aligned_cols=54  Identities=6%  Similarity=0.070  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhC--------CCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          206 KLIEIVKKRFISL--------GGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       206 ~l~~~L~~~a~~~--------G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      .+.+.|.+.+.+.        |++|+.+++|++|..++++++|++.+|++++||.||.|++.
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCH
Confidence            4556666555443        67899999999999888889999988888999999999985

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.98  E-value=0.0026  Score=66.73  Aligned_cols=89  Identities=18%  Similarity=0.300  Sum_probs=67.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |+.|+-+|..+++.|.+|+|+|+...-.                  ..             +.+         
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll------------------~~-------------~d~---------  188 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKIN------------------KL-------------MDA---------  188 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCS------------------TT-------------SCG---------
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeecccc------------------cc-------------ccc---------
Confidence            699999 9999999999999999999999872100                  00             000         


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                           +   .       .+.+.+...+.|++++.+++|+++  +++.  +.+++|+++.+|.||.|.|.
T Consensus       189 -----~---~-------~~~~~~~l~~~gV~i~~~~~v~~~--~~~~--v~~~~g~~~~~D~vl~a~G~  238 (437)
T 4eqs_A          189 -----D---M-------NQPILDELDKREIPYRLNEEINAI--NGNE--ITFKSGKVEHYDMIIEGVGT  238 (437)
T ss_dssp             -----G---G-------GHHHHHHHHHTTCCEEESCCEEEE--ETTE--EEETTSCEEECSEEEECCCE
T ss_pred             -----h---h-------HHHHHHHhhccceEEEeccEEEEe--cCCe--eeecCCeEEeeeeEEEEece
Confidence                 0   0       034556667789999999999887  3443  55678899999999999994

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.91  E-value=0.00076  Score=75.69  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=31.9

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..+||+||| |++|+++|..|+++|++|+|||+..
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~  422 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE  422 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            368999999 9999999999999999999999974

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.85  E-value=0.012  Score=63.18  Aligned_cols=92  Identities=14%  Similarity=0.149  Sum_probs=65.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |..|+-+|..|++.|.+|+|+++..+...                   ++                       
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~-------------------~d-----------------------  249 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG-------------------FD-----------------------  249 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT-------------------SC-----------------------
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccc-------------------CC-----------------------
Confidence            599999 99999999999999999999997521100                   00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC----CeEEEEE--cCC---eEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE----NAAVLLL--AEG---KILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~----~gv~v~~--~~G---~~i~a~lVV~AdG~  259 (535)
                                    ..+.+.+.+.+.+.|++++.+++++++...+    +++.+.+  .+|   .++.+|.||.|+|.
T Consensus       250 --------------~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~  313 (519)
T 3qfa_A          250 --------------QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGR  313 (519)
T ss_dssp             --------------HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCE
T ss_pred             --------------HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCC
Confidence                          0111345556667899999999888886543    3444443  344   25789999999994

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.85  E-value=0.0053  Score=64.84  Aligned_cols=92  Identities=15%  Similarity=0.231  Sum_probs=66.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++++.+..-.                 ..+++                     
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------~~~d~---------------------  214 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALI-----------------TLEDQ---------------------  214 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-----------------TSCCH---------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCC-----------------CCCCH---------------------
Confidence            3699999 99999999999999999999998731000                 00000                     


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC-CeEEEEEc--CCe--EEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYE-NAAVLLLA--EGK--ILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~-~gv~v~~~--~G~--~i~a~lVV~AdG~  259 (535)
                                      .+.+.+.+...   ++++.+++|+++..++ +++.+.++  +|+  ++.+|.||.|+|.
T Consensus       215 ----------------~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~  270 (466)
T 3l8k_A          215 ----------------DIVNTLLSILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGR  270 (466)
T ss_dssp             ----------------HHHHHHHHHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCE
T ss_pred             ----------------HHHHHHHhcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCC
Confidence                            01122222222   8889999999998776 77878776  565  7999999999994

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.84  E-value=0.001  Score=73.82  Aligned_cols=41  Identities=10%  Similarity=0.022  Sum_probs=35.8

Q ss_pred             CCCEEEeCceEEEEEEeCCeEEEEEcC------CeEEEcCeEEEccC
Q 009427          218 LGGVIFEGYSVSSICTYENAAVLLLAE------GKILSSHLIIDAMG  258 (535)
Q Consensus       218 ~G~~i~~~~~V~~i~~~~~gv~v~~~~------G~~i~a~lVV~AdG  258 (535)
                      .+..|+.+++|++|..++++++|++.+      +++++||.||.|..
T Consensus       409 ~~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP  455 (662)
T 2z3y_A          409 EGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLP  455 (662)
T ss_dssp             TTCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCC
T ss_pred             hcCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCC
Confidence            356899999999999999999888765      56899999999987

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.83  E-value=0.0078  Score=59.30  Aligned_cols=88  Identities=17%  Similarity=0.102  Sum_probs=64.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++++...                     +...                     
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~---------------------~~~~---------------------  192 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDT---------------------FKAQ---------------------  192 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSS---------------------CCSC---------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCC---------------------CCcC---------------------
Confidence            4799999 99999999999999999999998621                     0000                     


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEcC---Ce--EEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLAE---GK--ILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~v~~~~---G~--~i~a~lVV~AdG~  259 (535)
                                         ..+.+++.+ .|++++.+++++++..++....+.+.+   |+  ++.+|.||.|+|.
T Consensus       193 -------------------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~  249 (323)
T 3f8d_A          193 -------------------PIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGF  249 (323)
T ss_dssp             -------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             -------------------HHHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECC
Confidence                               011223333 489999999999997654433455544   64  7999999999994

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.82  E-value=0.0073  Score=59.47  Aligned_cols=88  Identities=17%  Similarity=0.081  Sum_probs=63.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+++++.+..                   .. +                      
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-------------------~~-~----------------------  182 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM-------------------KA-D----------------------  182 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC-------------------CS-C----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc-------------------Cc-c----------------------
Confidence            3799999 999999999999999999999986310                   00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE-EEEEc---CC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLA---EG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv-~v~~~---~G--~~i~a~lVV~AdG~  259 (535)
                                         +.+.+++.+ .|++++.+++++++..+++.+ .+.+.   +|  .++.+|.||.|+|.
T Consensus       183 -------------------~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  240 (310)
T 1fl2_A          183 -------------------QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  240 (310)
T ss_dssp             -------------------HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             -------------------HHHHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence                               012233344 589999999999997654433 24443   24  36899999999994

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.81  E-value=0.0009  Score=74.31  Aligned_cols=35  Identities=23%  Similarity=0.436  Sum_probs=32.2

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +..+||+||| |++|+++|..|+++|++|+|||+..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~  406 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS  406 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            3468999999 9999999999999999999999974

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.80  E-value=0.0065  Score=60.24  Aligned_cols=88  Identities=15%  Similarity=0.072  Sum_probs=63.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|.++++.....                   . .                      
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~-------------------~-~----------------------  193 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM-------------------C-E----------------------  193 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC-------------------S-C----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC-------------------C-C----------------------
Confidence            3699999 9999999999999999999999762100                   0 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEc---CCe--EEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLA---EGK--ILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~---~G~--~i~a~lVV~AdG~  259 (535)
                                         ..+.+++.+.|++++.+++|+++..+++.+ .+.+.   +|+  ++.+|.||.|+|.
T Consensus       194 -------------------~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (319)
T 3cty_A          194 -------------------NAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGL  250 (319)
T ss_dssp             -------------------HHHHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCE
T ss_pred             -------------------HHHHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCC
Confidence                               112233446799999999999997654412 23332   563  6999999999994

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.79  E-value=0.00078  Score=72.17  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=31.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +||+|||| |++|+++|..|++.|++|+|||++.
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   38 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   38 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            69999999 9999999999999999999999875

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.78  E-value=0.01  Score=58.35  Aligned_cols=89  Identities=18%  Similarity=0.094  Sum_probs=64.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|.++++......                    ..                     
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~--------------------~~---------------------  186 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA--------------------AP---------------------  186 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS--------------------CH---------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC--------------------CH---------------------
Confidence            4799999 99999999999999999999998621100                    00                     


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE---EEEEcCCe--EEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA---VLLLAEGK--ILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv---~v~~~~G~--~i~a~lVV~AdG~  259 (535)
                                         ..+.+..++.|++++.+++++++..+++.+   ++...+|+  ++.+|.||.|+|.
T Consensus       187 -------------------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~  242 (315)
T 3r9u_A          187 -------------------STVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGL  242 (315)
T ss_dssp             -------------------HHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred             -------------------HHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence                               001111235689999999999998776443   33333674  7999999999994

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.78  E-value=0.00094  Score=71.63  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=31.9

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .+||+|||| |++|+.+|..|++.|.+|+|||++.
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~   44 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   44 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence            469999999 9999999999999999999999873

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.76  E-value=0.0095  Score=59.20  Aligned_cols=88  Identities=16%  Similarity=0.145  Sum_probs=62.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++++.....                   . +                      
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------------------~-~----------------------  190 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR-------------------A-N----------------------  190 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC-------------------S-C----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC-------------------c-c----------------------
Confidence            4699999 9999999999999999999999862100                   0 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeEEEEEc---CCe--EEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAAVLLLA---EGK--ILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv~v~~~---~G~--~i~a~lVV~AdG~  259 (535)
                                         ..+.+++.+ .|++++.+++|+++..++....|.+.   +|+  ++.+|.||.|+|.
T Consensus       191 -------------------~~~~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  247 (325)
T 2q7v_A          191 -------------------KVAQARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGH  247 (325)
T ss_dssp             -------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             -------------------hHHHHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCC
Confidence                               011223333 48999999999999754321234443   564  7899999999994

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.71  E-value=0.016  Score=63.25  Aligned_cols=92  Identities=20%  Similarity=0.198  Sum_probs=64.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |..|+-+|..|++.|.+|+|+++..+..                  ++ ++                      
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~------------------~~-d~----------------------  326 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRSILLR------------------GF-DQ----------------------  326 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST------------------TS-CH----------------------
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcC------------------cC-CH----------------------
Confidence            699999 9999999999999999999999862110                  00 00                      


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe------C---CeEEEE--EcCCeEEE--cCeEEEcc
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY------E---NAAVLL--LAEGKILS--SHLIIDAM  257 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~------~---~gv~v~--~~~G~~i~--a~lVV~Ad  257 (535)
                                     .+.+.+.+.+.+.|++++.++.++++...      +   +++.+.  ..+|+++.  +|.||.|.
T Consensus       327 ---------------~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~  391 (598)
T 2x8g_A          327 ---------------QMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAV  391 (598)
T ss_dssp             ---------------HHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECS
T ss_pred             ---------------HHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEe
Confidence                           01123444556679999999888887543      2   344444  34676554  99999999


Q ss_pred             CC
Q 009427          258 GN  259 (535)
Q Consensus       258 G~  259 (535)
                      |.
T Consensus       392 G~  393 (598)
T 2x8g_A          392 GR  393 (598)
T ss_dssp             CE
T ss_pred             CC
Confidence            94

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.70  E-value=0.0065  Score=60.20  Aligned_cols=88  Identities=17%  Similarity=0.140  Sum_probs=64.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++++.....                  ..      +                 
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~------------------~~------~-----------------  193 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR------------------AH------E-----------------  193 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS------------------SC------H-----------------
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC------------------cc------H-----------------
Confidence            4699999 9999999999999999999999862100                  00      0                 


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC-----CeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE-----GKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~-----G~~i~a~lVV~AdG~  259 (535)
                                          ...+++.+.|++++.+++++++..+++...+.+.+     +.++.+|.||.|+|.
T Consensus       194 --------------------~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~  248 (332)
T 3lzw_A          194 --------------------HSVENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGF  248 (332)
T ss_dssp             --------------------HHHHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCE
T ss_pred             --------------------HHHHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeecc
Confidence                                00122456799999999999997554433444443     357999999999994

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.68  E-value=0.0015  Score=74.15  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=31.7

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ...||+||| |++|+++|+.|+++|++|+|+|+..
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~  311 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD  311 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            357999999 9999999999999999999999874

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.65  E-value=0.0017  Score=71.18  Aligned_cols=39  Identities=41%  Similarity=0.479  Sum_probs=34.8

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGR  146 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~  146 (535)
                      +.+|||+||| |..|+.+|..|++.|.+|++|||+..-++
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg   45 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG   45 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccC
Confidence            3479999999 99999999999999999999999965443

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.57  E-value=0.0013  Score=71.88  Aligned_cols=34  Identities=29%  Similarity=0.584  Sum_probs=31.8

Q ss_pred             CcccEEEEc-chHHHHHHHHHHH-CCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSF-KGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr-~G~~V~liEr~~  142 (535)
                      .+||+|||| |++|+++|..|++ .|.+|+|||++.
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~   58 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            369999999 9999999999999 799999999984

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.57  E-value=0.011  Score=58.86  Aligned_cols=88  Identities=20%  Similarity=0.139  Sum_probs=63.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|.++++.+...                   . .                      
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~-------------------~-~----------------------  197 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR-------------------A-S----------------------  197 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC-------------------S-C----------------------
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC-------------------c-c----------------------
Confidence            4799999 9999999999999999999999873100                   0 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHH-HHhCCCEEEeCceEEEEEEeCC--eEE-EEEc---CC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKR-FISLGGVIFEGYSVSSICTYEN--AAV-LLLA---EG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~-a~~~G~~i~~~~~V~~i~~~~~--gv~-v~~~---~G--~~i~a~lVV~AdG~  259 (535)
                                         +.+.++ ..+.|++++.+++++++..+++  .+. +.+.   +|  .++.+|.||.|+|.
T Consensus       198 -------------------~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  257 (333)
T 1vdc_A          198 -------------------KIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGH  257 (333)
T ss_dssp             -------------------HHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             -------------------HHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCC
Confidence                               011222 2356899999999999976553  322 3332   34  57999999999994

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.51  E-value=0.0014  Score=71.01  Aligned_cols=33  Identities=42%  Similarity=0.615  Sum_probs=31.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~  142 (535)
                      +||+|||| |++|+++|..|++. |.+|+|||++.
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~   47 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGP   47 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence            69999999 99999999999998 99999999984

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.51  E-value=0.011  Score=57.38  Aligned_cols=151  Identities=13%  Similarity=0.063  Sum_probs=96.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.| +|.++++...                    .+ .                      
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~--------------------~~-~----------------------  177 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV--------------------EP-D----------------------  177 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC--------------------CC-C----------------------
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC--------------------CC-C----------------------
Confidence            4799999 999999999999999 9999987621                    00 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHHhCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFP  269 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p  269 (535)
                                         +.+.+.+.+.|++++. ++|+++.  +++ .+.+.+|+++.+|.||.|+|..        |
T Consensus       178 -------------------~~~~~~l~~~gv~i~~-~~v~~i~--~~~-~v~~~~g~~~~~D~vi~a~G~~--------p  226 (297)
T 3fbs_A          178 -------------------ADQHALLAARGVRVET-TRIREIA--GHA-DVVLADGRSIALAGLFTQPKLR--------I  226 (297)
T ss_dssp             -------------------HHHHHHHHHTTCEEEC-SCEEEEE--TTE-EEEETTSCEEEESEEEECCEEE--------C
T ss_pred             -------------------HHHHHHHHHCCcEEEc-ceeeeee--cCC-eEEeCCCCEEEEEEEEEccCcc--------c
Confidence                               1123344567899885 8898884  333 5677788899999999999942        1


Q ss_pred             CCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhc-cccCCCCCCCCccCCCeeEeecCC
Q 009427          270 AGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYG-IFPTYRDSPLPAAFNRILQFGDAS  348 (535)
Q Consensus       270 ~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g-~~P~~~~~pl~~~~~rvlliGDAA  348 (535)
                      ..       .    +         +...     .       ...+.     ...| .+....  .+.+..++++++||++
T Consensus       227 ~~-------~----~---------~~~~-----g-------~~~~~-----~~~G~~i~vd~--~~~t~~~~vya~GD~~  267 (297)
T 3fbs_A          227 TV-------D----W---------IEKL-----G-------CAVEE-----GPMGSTIVTDP--MKQTTARGIFACGDVA  267 (297)
T ss_dssp             CC-------S----C---------HHHH-----T-------CCEEE-----ETTEEEECCCT--TCBCSSTTEEECSGGG
T ss_pred             Cc-------h----h---------HHhc-----C-------Ccccc-----CCCCceEEeCC--CCccCCCCEEEEeecC
Confidence            10       0    0         0000     0       00000     0001 111111  1223358899999999


Q ss_pred             CcccccccccchHHHHHHHHHHHHHHHHHhCC
Q 009427          349 GIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD  380 (535)
Q Consensus       349 ~~~~P~~G~Gi~~al~da~~La~~l~~al~~~  380 (535)
                      +.  |   .....|+.++..+|..|.+.+..+
T Consensus       268 ~~--~---~~~~~A~~~g~~aa~~i~~~l~~~  294 (297)
T 3fbs_A          268 RP--A---GSVALAVGDGAMAGAAAHRSILFP  294 (297)
T ss_dssp             CT--T---CCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             Cc--h---HHHHHHHHhHHHHHHHHHHHHhhh
Confidence            85  2   345678889999999888877643

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.49  E-value=0.0085  Score=64.07  Aligned_cols=116  Identities=16%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE--cCC----eEEEcCeEEEccCCCh-HHHHHhCCCCCCCCCceeEE
Q 009427          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AEG----KILSSHLIIDAMGNFS-PVVKQAFPAGSGPLDRTTYM  281 (535)
Q Consensus       209 ~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~--~~G----~~i~a~lVV~AdG~~S-~v~~~~~p~~~~~~~~~~~~  281 (535)
                      +.+.+.+++.|++++.+++|+++  +++++++.+  .||    +++.||+||.|+|... ++.....             
T Consensus       276 ~~~~~~L~~~GV~v~~~~~v~~v--~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~-------------  340 (502)
T 4g6h_A          276 SYAQSHLENTSIKVHLRTAVAKV--EEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLF-------------  340 (502)
T ss_dssp             HHHHHHHHHTTCEEETTEEEEEE--CSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHH-------------
T ss_pred             HHHHHHHHhcceeeecCceEEEE--eCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHH-------------
Confidence            55666777889999999999998  456665544  455    3699999999999521 1111100             


Q ss_pred             EEEecCCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhccccCCCCCCCCcc-CCCeeEeecCCCcccccccccch
Q 009427          282 FTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAA-FNRILQFGDASGIQSPVSFGGFG  360 (535)
Q Consensus       282 ~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl~~~-~~rvlliGDAA~~~~P~~G~Gi~  360 (535)
                                       .    -.+...    +.       .|.+....  .+++. .++|+++||+|..-.|-++|   
T Consensus       341 -----------------~----~~~~~~----~~-------~g~I~Vd~--~lq~~~~~~IfAiGD~a~~~~p~~a~---  383 (502)
T 4g6h_A          341 -----------------K----KIPEQN----SS-------KRGLAVND--FLQVKGSNNIFAIGDNAFAGLPPTAQ---  383 (502)
T ss_dssp             -----------------H----HSGGGT----TC-------CSSEEBCT--TSBBTTCSSEEECGGGEESSSCCCHH---
T ss_pred             -----------------H----hccccc----cC-------CCceeECC--ccccCCCCCEEEEEcccCCCCCCchH---
Confidence                             0    000000    00       01111110  12222 47899999999887777665   


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009427          361 SLTRHLGRLSTGVYEA  376 (535)
Q Consensus       361 ~al~da~~La~~l~~a  376 (535)
                      .|.+.+..+|+.|...
T Consensus       384 ~A~qqg~~~A~ni~~~  399 (502)
T 4g6h_A          384 VAHQEAEYLAKNFDKM  399 (502)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4788888888877654

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.48  E-value=0.002  Score=75.08  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=31.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~  142 (535)
                      .+||+||| ||+|+++|..|++.|+ +|+|+|+..
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~  221 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE  221 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            58999999 9999999999999999 799999974

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.39  E-value=0.0019  Score=68.24  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=31.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHH-C------CCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSF-K------GLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr-~------G~~V~liEr~~~  143 (535)
                      .+||+||| |++|+.+|..|++ .      |++|+|||+.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~   44 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   44 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC
Confidence            48999999 9999999999999 7      999999999853

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.39  E-value=0.0023  Score=67.72  Aligned_cols=34  Identities=29%  Similarity=0.408  Sum_probs=31.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCC--CcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKG--LRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~~  143 (535)
                      .+||+||| |++|+.+|..|++.|  ++|+|||+.+.
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~   42 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   42 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence            58999999 999999999999998  99999999853

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.36  E-value=0.027  Score=60.85  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=30.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|+||| |.+|+-+|..|++.|.+|+|++|.+
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~  218 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTP  218 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCC
Confidence            4799999 9999999999999999999999985

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.34  E-value=0.0018  Score=66.79  Aligned_cols=81  Identities=23%  Similarity=0.259  Sum_probs=59.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |..|+-+|..|++.|.+|+|+|+.+....                 ..++                       
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~-----------------~~~~-----------------------  187 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLE-----------------RQLD-----------------------  187 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT-----------------TTSC-----------------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch-----------------hhcC-----------------------
Confidence            699999 99999999999999999999998731100                 0000                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                    ..+.+.+.+.+++.|++++.+++|+++             |+++.+|.||.|+|.
T Consensus       188 --------------~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------g~~~~~D~vv~a~G~  229 (385)
T 3klj_A          188 --------------RDGGLFLKDKLDRLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGV  229 (385)
T ss_dssp             --------------HHHHHHHHHHHHTTTCEEECSCCGGGC-------------HHHHHHSEEEECCCE
T ss_pred             --------------HHHHHHHHHHHHhCCCEEEeCCEEEEc-------------CeEEecCeEEECcCc
Confidence                          011133455566778999988877665             456889999999994

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.31  E-value=0.056  Score=58.20  Aligned_cols=32  Identities=25%  Similarity=0.263  Sum_probs=30.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|+||| |.+|+-+|..|++.|.+|+|++|.+
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  211 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTP  211 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            4799999 9999999999999999999999984

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.17  E-value=0.012  Score=58.72  Aligned_cols=88  Identities=19%  Similarity=0.114  Sum_probs=62.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++++.....                   .              .         
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~-------------------~--------------~---------  193 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR-------------------A--------------S---------  193 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS-------------------S--------------C---------
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC-------------------c--------------c---------
Confidence            4799999 9999999999999999999999862100                   0              0         


Q ss_pred             CcceeeeccccccCHHHHHHHHHHH-HHhCCCEEEeCceEEEEEEeCC--eEEEEE-cCC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKR-FISLGGVIFEGYSVSSICTYEN--AAVLLL-AEG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~-a~~~G~~i~~~~~V~~i~~~~~--gv~v~~-~~G--~~i~a~lVV~AdG~  259 (535)
                                         +.+.++ ..+.|++++.+++|+++..+++  ++++.. .+|  .++.+|.||.|+|.
T Consensus       194 -------------------~~~~~~~~~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~  250 (335)
T 2a87_A          194 -------------------KIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGH  250 (335)
T ss_dssp             -------------------TTHHHHHHHCTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCE
T ss_pred             -------------------HHHHHHHhccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCC
Confidence                               001112 2346899999999999864432  244432 134  57999999999994

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.03  E-value=0.038  Score=58.23  Aligned_cols=37  Identities=8%  Similarity=-0.015  Sum_probs=28.0

Q ss_pred             CCeeEeecCCCccccccccc-chHHHHHHHHHHHHHHHHHhCC
Q 009427          339 NRILQFGDASGIQSPVSFGG-FGSLTRHLGRLSTGVYEAVRGD  380 (535)
Q Consensus       339 ~rvlliGDAA~~~~P~~G~G-i~~al~da~~La~~l~~al~~~  380 (535)
                      ++++++||++..  |   .| +..++.++..++..|...+..+
T Consensus       360 p~vya~Gd~~~g--~---~~~i~~a~~~g~~aa~~i~~~l~~~  397 (460)
T 1cjc_A          360 PGLYCSGWVKRG--P---TGVITTTMTDSFLTGQILLQDLKAG  397 (460)
T ss_dssp             TTEEECTHHHHC--T---TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCcC--C---CccHHHHHHHHHHHHHHHHHHHHhC
Confidence            689999999842  2   23 4578999999999888777544

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.89  E-value=0.037  Score=59.34  Aligned_cols=88  Identities=17%  Similarity=0.078  Sum_probs=63.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |..|+-+|..|++.|.+|+++++.+....                    +                      
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~--------------------~----------------------  393 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--------------------D----------------------  393 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS--------------------C----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc--------------------C----------------------
Confidence            3799999 99999999999999999999997621000                    0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHh-CCCEEEeCceEEEEEEeCCeE-EEEEc---CC--eEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFIS-LGGVIFEGYSVSSICTYENAA-VLLLA---EG--KILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~-~G~~i~~~~~V~~i~~~~~gv-~v~~~---~G--~~i~a~lVV~AdG~  259 (535)
                                         ..+.+++.+ .|++++.++.++++..+++.+ .+.+.   +|  .++.+|.||.|.|.
T Consensus       394 -------------------~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~  451 (521)
T 1hyu_A          394 -------------------QVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGL  451 (521)
T ss_dssp             -------------------HHHHHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             -------------------HHHHHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence                               112233344 488999999999987654443 24443   34  36899999999994

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=95.66  E-value=0.0045  Score=68.79  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=30.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCC--------CcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKG--------LRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G--------~~V~liEr~~  142 (535)
                      ..+|+||| |++|+++|+.|++.|        ++|+|+|+..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence            47999999 999999999999999        9999999875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=95.63  E-value=0.044  Score=59.14  Aligned_cols=32  Identities=22%  Similarity=0.275  Sum_probs=30.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|+||| |.+|+-+|..|++.|.+|++++|.+
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  224 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA  224 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            4799999 9999999999999999999999985

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.57  E-value=0.031  Score=61.81  Aligned_cols=48  Identities=19%  Similarity=0.317  Sum_probs=37.7

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccCC
Q 009427          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMGN  259 (535)
Q Consensus       209 ~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG~  259 (535)
                      ..+.+.+.+.|++++.+++|+++.  +++++++ .+|  +++.+|.||.|.|.
T Consensus       577 ~~~~~~l~~~GV~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G~  626 (671)
T 1ps9_A          577 WIHRTTLLSRGVKMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAGQ  626 (671)
T ss_dssp             HHHHHHHHHTTCEEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCCE
T ss_pred             HHHHHHHHhcCCEEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCCc
Confidence            344566677899999999999984  5666665 567  57999999999994

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=95.42  E-value=0.043  Score=57.79  Aligned_cols=31  Identities=32%  Similarity=0.504  Sum_probs=27.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC--------------------CC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK--------------------GL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~--------------------G~-~V~liEr~  141 (535)
                      -.|+||| |..|+-+|..|++.                    |. +|.|++|.
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~  200 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR  200 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecC
Confidence            4799999 99999999999974                    64 89999987

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.03  E-value=0.051  Score=62.78  Aligned_cols=86  Identities=16%  Similarity=0.184  Sum_probs=63.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-+|..|++.|.+|+|+|+.+.                     + ..                     
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~---------------------~-~~---------------------  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSS---------------------I-SA---------------------  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSS---------------------C-CH---------------------
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCc---------------------c-ch---------------------
Confidence            3699999 99999999999999999999998621                     0 00                     


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe-CCeE-EEEEcC-------C--eEEEcCeEEEccC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY-ENAA-VLLLAE-------G--KILSSHLIIDAMG  258 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~-~~gv-~v~~~~-------G--~~i~a~lVV~AdG  258 (535)
                                         .  .+.+++.|++++.++.|+++..+ ++++ .|.+.+       |  +++.+|.||.|.|
T Consensus       322 -------------------~--~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G  380 (965)
T 2gag_A          322 -------------------A--AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGG  380 (965)
T ss_dssp             -------------------H--HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECC
T ss_pred             -------------------h--HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCC
Confidence                               0  12345678999999999998753 3332 233332       4  5799999999999


Q ss_pred             CC
Q 009427          259 NF  260 (535)
Q Consensus       259 ~~  260 (535)
                      ..
T Consensus       381 ~~  382 (965)
T 2gag_A          381 FN  382 (965)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=94.96  E-value=0.18  Score=58.53  Aligned_cols=30  Identities=40%  Similarity=0.362  Sum_probs=28.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      .|+||| |..|+-+|..+++.|. +|+|+++.
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~  365 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRK  365 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEec
Confidence            799999 9999999999999997 89999987

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.78  E-value=0.038  Score=48.01  Aligned_cols=31  Identities=16%  Similarity=0.437  Sum_probs=29.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |..|..+|..|.+.|++|+++|++
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~   39 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETS   39 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence            4699999 999999999999999999999987

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.70  E-value=0.18  Score=49.22  Aligned_cols=31  Identities=29%  Similarity=0.338  Sum_probs=29.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |..|+-+|..|++.|.+|+|+|+.
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~  184 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRR  184 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeeccc
Confidence            4699999 999999999999999999999986

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.37  E-value=0.13  Score=54.09  Aligned_cols=31  Identities=16%  Similarity=0.021  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |.+|+-+|..|++.|.+|+|+++.
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~  229 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYR  229 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECS
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEEC
Confidence            4699999 999999999999999999999976

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.35  E-value=0.052  Score=56.76  Aligned_cols=31  Identities=13%  Similarity=0.005  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCc-EEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~  141 (535)
                      -+|+||| |.+|+-+|..|++.|.+ |+|+++.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~  245 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG  245 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCC
Confidence            4799999 99999999999999999 9999986

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=94.21  E-value=0.11  Score=54.80  Aligned_cols=32  Identities=22%  Similarity=0.229  Sum_probs=28.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCc-EEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~  142 (535)
                      -+|+||| |.+|+-+|..+.+.|.+ |++++|..
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCC
Confidence            4799999 99999999999999985 99999873

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=93.98  E-value=0.31  Score=50.01  Aligned_cols=47  Identities=15%  Similarity=0.256  Sum_probs=37.0

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       209 ~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      +.+.+.+.+.|++++.+++|++++  +++  +.+++|+++.+|.||.|.|.
T Consensus       222 ~~~~~~l~~~gV~~~~~~~v~~i~--~~~--v~~~~g~~~~~D~vi~a~G~  268 (409)
T 3h8l_A          222 KAVASIYNQLGIKLVHNFKIKEIR--EHE--IVDEKGNTIPADITILLPPY  268 (409)
T ss_dssp             HHHHHHHHHHTCEEECSCCEEEEC--SSE--EEETTSCEEECSEEEEECCE
T ss_pred             HHHHHHHHHCCCEEEcCCceEEEC--CCe--EEECCCCEEeeeEEEECCCC
Confidence            345555667799999999999984  444  55678889999999999994

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=93.82  E-value=0.18  Score=56.21  Aligned_cols=32  Identities=22%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             ccEEEEc---chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG---GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG---G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|+|||   |..|+-+|..|++.|.+|+|+++..
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            3699994   6999999999999999999999873

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.66  E-value=0.067  Score=47.19  Aligned_cols=32  Identities=34%  Similarity=0.561  Sum_probs=29.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|+|+| |..|..+|..|.+.|++|+++|+++
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4799999 9999999999999999999999873

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.64  E-value=0.065  Score=46.25  Aligned_cols=31  Identities=26%  Similarity=0.501  Sum_probs=29.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+|+| |..|..+|..|++.|++|+++|++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            3699999 999999999999999999999987

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=93.52  E-value=0.43  Score=49.48  Aligned_cols=49  Identities=12%  Similarity=0.104  Sum_probs=36.4

Q ss_pred             HHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE--cC-----CeEEEcCeEEEccCC
Q 009427          209 EIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL--AE-----GKILSSHLIIDAMGN  259 (535)
Q Consensus       209 ~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~--~~-----G~~i~a~lVV~AdG~  259 (535)
                      +.+.+.+.+.|++++.+++|+++  +++++++..  .+     +.++.+|++|.|.|.
T Consensus       212 ~~~~~~l~~~gI~~~~~~~v~~v--~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          212 GILTKGLKEEGIEAYTNCKVTKV--EDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEE--ETTEEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEE--ECCeEEEEecccCCccccceEEEEeEEEEcCCC
Confidence            34555666789999999999998  456666553  22     467999999999883

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=93.49  E-value=0.065  Score=55.90  Aligned_cols=35  Identities=31%  Similarity=0.506  Sum_probs=32.5

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +.++||+||| |++|+++|+.|+++|++|+|+|++.
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~   39 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNP   39 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            3469999999 9999999999999999999999974

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.44  E-value=0.069  Score=45.57  Aligned_cols=31  Identities=29%  Similarity=0.602  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|+|+| |..|..+|..|++.|++|.++|++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4799999 999999999999999999999986

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=93.35  E-value=0.13  Score=53.88  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=33.1

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      .++|||||| |++|+++|+.|+++|++|+|+|++...
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~   46 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   46 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            469999999 999999999999999999999998543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=93.25  E-value=0.18  Score=50.06  Aligned_cols=30  Identities=20%  Similarity=0.330  Sum_probs=27.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |..|+-+|..|++.| +|+++++.
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~  194 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQH  194 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence            4799999 999999999999999 79999886

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.49  E-value=0.12  Score=45.37  Aligned_cols=31  Identities=29%  Similarity=0.450  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+|+| |..|..+|..|.+.|++|+++|++
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            3699999 999999999999999999999986

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.07  E-value=0.11  Score=46.97  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC-CCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK-GLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~  141 (535)
                      -.|+|+| |..|..+|..|.+. |++|+++|++
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~   72 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIR   72 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence            3699999 99999999999999 9999999987

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=91.80  E-value=0.15  Score=53.60  Aligned_cols=33  Identities=39%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~  142 (535)
                      .+||+||| |++|+++|+.|++.|+ +|+|+|+..
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~   38 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   38 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCC
Confidence            58999999 9999999999999999 899999974

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=91.45  E-value=0.16  Score=43.45  Aligned_cols=30  Identities=33%  Similarity=0.381  Sum_probs=28.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|+|+| |..|..+|..|.+.|++|.++|++
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            599999 999999999999999999999986

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=91.10  E-value=0.17  Score=41.53  Aligned_cols=31  Identities=26%  Similarity=0.584  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCC-CcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKG-LRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~  141 (535)
                      ..|+|+| |..|..+|..|.+.| ++|.+++|+
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            4699999 999999999999999 999999986

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=91.10  E-value=0.18  Score=50.32  Aligned_cols=31  Identities=29%  Similarity=0.443  Sum_probs=29.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|.||| |..|...|..+|..|++|+|+|.+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~   38 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIE   38 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence            4699999 999999999999999999999986

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=90.75  E-value=0.15  Score=50.11  Aligned_cols=30  Identities=30%  Similarity=0.318  Sum_probs=28.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|+||| |..|+-+|..|++.|.+|+|+|+.
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  177 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRR  177 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEecc
Confidence            699999 999999999999999999999986

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.33  E-value=0.23  Score=46.35  Aligned_cols=30  Identities=23%  Similarity=0.476  Sum_probs=28.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|+||| |..|..+|..|.+.|++|+++|++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~   32 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD   32 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            489999 999999999999999999999987

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=90.28  E-value=2  Score=45.93  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=29.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|+||| |..|+-+|..|++.|.+|++++|.+
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~  219 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP  219 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CEEEEECCCccHHHHHHHHhhcCceEEEEEcCC
Confidence            4699999 9999999999999999999999874

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=89.92  E-value=0.26  Score=48.58  Aligned_cols=30  Identities=33%  Similarity=0.489  Sum_probs=28.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|++.|++|+++|++
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~   47 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   47 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            599999 999999999999999999999987

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=89.65  E-value=0.52  Score=49.42  Aligned_cols=60  Identities=20%  Similarity=0.214  Sum_probs=42.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHH
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEA  174 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~  174 (535)
                      -.|.||| |..|...|..|++.|++|+++|+++-    +..+.....++.+.+.|.++.++.+..
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e----~a~~~i~~~l~~~~~~G~l~~~~~~~~  115 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ----RCKQELEVMYAREKSFKRLNDKRIEKI  115 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH----HHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            4699999 99999999999999999999998842    111112234556666676665544443

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=89.56  E-value=0.29  Score=47.81  Aligned_cols=30  Identities=40%  Similarity=0.577  Sum_probs=28.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|++.|++|.++|++
T Consensus         6 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~   36 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFHGFAVTAYDIN   36 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            599999 999999999999999999999987

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=89.45  E-value=0.3  Score=51.05  Aligned_cols=32  Identities=28%  Similarity=0.396  Sum_probs=30.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ...+.||| |..|+.+|..+|+.|++|+.+|-+
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did   53 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVN   53 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECC
Confidence            46899999 999999999999999999999987

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=89.42  E-value=0.29  Score=51.71  Aligned_cols=32  Identities=19%  Similarity=0.450  Sum_probs=30.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ...|.||| |..|+.+|..|++.|++|+++|++
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            46899999 999999999999999999999986

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=88.44  E-value=0.4  Score=50.18  Aligned_cols=33  Identities=21%  Similarity=0.425  Sum_probs=30.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ...+.||| |..|+.+|..|++.|++|+++|+++
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~   41 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDA   41 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46899999 9999999999999999999999984

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=88.39  E-value=0.31  Score=51.11  Aligned_cols=32  Identities=25%  Similarity=0.232  Sum_probs=29.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|.||| |.+|+++|..|+++|++|.+.|++.
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            3699999 9999999999999999999999863

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=87.95  E-value=0.28  Score=51.20  Aligned_cols=32  Identities=16%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      .|+||| |.+|+++|..|+++|++|.+.|....
T Consensus         7 ~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             CEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             EEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            599999 99999999999999999999998743

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=87.67  E-value=0.39  Score=46.06  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=30.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~  143 (535)
                      ..|+||| |-.|..+|..|++.|. +++|+|++.+
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   66 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            5799999 9999999999999998 7999999854

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=87.51  E-value=0.48  Score=49.09  Aligned_cols=31  Identities=23%  Similarity=0.580  Sum_probs=29.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.||||| |..|..+|..|.+.|++|++||++
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d   36 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHD   36 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            4699999 999999999999999999999998

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=87.41  E-value=0.47  Score=47.16  Aligned_cols=31  Identities=32%  Similarity=0.658  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|.+.|..|++.|++|.+++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3699999 999999999999999999999986

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=87.27  E-value=0.46  Score=49.78  Aligned_cols=30  Identities=30%  Similarity=0.544  Sum_probs=28.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|+.+|..|++.|++|+++|++
T Consensus         4 kI~VIG~G~vG~~lA~~La~~G~~V~~~D~~   34 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAELGANVRCIDTD   34 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCEEEEEECC
Confidence            699999 999999999999999999999987

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=87.17  E-value=0.51  Score=45.63  Aligned_cols=31  Identities=35%  Similarity=0.373  Sum_probs=28.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|.||| |..|...|..|++.|++|.+++|+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            489999 9999999999999999999999874

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=86.61  E-value=0.6  Score=43.30  Aligned_cols=32  Identities=19%  Similarity=0.436  Sum_probs=29.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..|.||| |..|.+.|..|++.|++|.+++|.+
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            5799999 9999999999999999999999873

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=86.57  E-value=0.57  Score=45.86  Aligned_cols=31  Identities=19%  Similarity=0.454  Sum_probs=28.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|...|..|++.|++|.+++|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            3699999 999999999999999999999986

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=86.48  E-value=0.55  Score=46.25  Aligned_cols=31  Identities=29%  Similarity=0.412  Sum_probs=28.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      +-.|.||| |..|...|..|+ .|++|+++|+.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~   43 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVS   43 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSC
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECC
Confidence            35799999 999999999999 99999999986

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=86.42  E-value=0.54  Score=46.48  Aligned_cols=31  Identities=26%  Similarity=0.547  Sum_probs=28.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |-.|.+.|..|++.|++|.+++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcC
Confidence            3699999 999999999999999999999986

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=86.03  E-value=0.74  Score=45.47  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=30.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..|.||| |..|...|..|++.|++|.++++++
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            5799999 9999999999999999999999873

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=85.96  E-value=0.65  Score=46.43  Aligned_cols=31  Identities=19%  Similarity=0.553  Sum_probs=28.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|.+.|..|++.|++|.+++|.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            4699999 999999999999999999999874

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=85.91  E-value=0.54  Score=48.99  Aligned_cols=30  Identities=30%  Similarity=0.421  Sum_probs=28.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|+.+|..|++.|++|+++|++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            488999 999999999999999999999986

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=85.76  E-value=0.56  Score=49.32  Aligned_cols=31  Identities=39%  Similarity=0.453  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|.||| |..|..+|..|++.|++|+++|++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~   69 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESD   69 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECC
Confidence            3699999 999999999999999999999987

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=85.50  E-value=0.58  Score=49.38  Aligned_cols=32  Identities=28%  Similarity=0.297  Sum_probs=30.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC-CC-cEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFK-GL-RVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~-G~-~V~liEr~~  142 (535)
                      ..|.||| |..|+.+|..|++. |+ +|+++|++.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~   53 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNS   53 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            4799999 99999999999999 99 999999884

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=85.48  E-value=1.2  Score=46.61  Aligned_cols=34  Identities=32%  Similarity=0.508  Sum_probs=31.9

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      .+||+||| |++|+++|+.|+++|++|+|+|+...
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~   45 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTR   45 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence            68999999 99999999999999999999999853

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=85.29  E-value=1.7  Score=42.29  Aligned_cols=30  Identities=7%  Similarity=0.095  Sum_probs=23.6

Q ss_pred             cEEEEc-c-hHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-G-TLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G-~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .++||| | .+++.+|..+++.|.+|+++++.
T Consensus       148 ~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~  179 (304)
T 4fk1_A          148 PLIIISENEDHTLHMTKLVYNWSTDLVIATNG  179 (304)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECSS
T ss_pred             ceeeecCCCchhhhHHHHHHhCCceEEEEecc
Confidence            577777 6 45678888888889999999775

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=85.14  E-value=0.62  Score=48.51  Aligned_cols=31  Identities=26%  Similarity=0.377  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ...-||| |..|+.+|..|++.|++|+++|++
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~   43 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDIN   43 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4688999 999999999999999999999987

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=85.13  E-value=0.72  Score=46.00  Aligned_cols=32  Identities=16%  Similarity=0.146  Sum_probs=28.7

Q ss_pred             ccEEEEc-chHHHH-HHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIF-IATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~-~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|.||| |.+|++ +|..|.++|++|.+.|+..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            3699999 999996 8889999999999999873

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=85.07  E-value=0.73  Score=47.43  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=29.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|+|+| |++|+.+|..|...|.+|+++|+.
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~  222 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVR  222 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence            5799999 999999999999999999999987

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=84.83  E-value=0.79  Score=44.60  Aligned_cols=31  Identities=29%  Similarity=0.366  Sum_probs=29.0

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|.||| |..|...|..|++.|++|.+++|++
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            589999 9999999999999999999999873

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=84.65  E-value=0.79  Score=45.25  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC--cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL--RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~  141 (535)
                      ..|+||| |..|..+|..|++.|+  +|.++|++
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4799999 9999999999999999  99999986

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=84.62  E-value=0.79  Score=45.04  Aligned_cols=31  Identities=29%  Similarity=0.354  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|...|..|++.|++|.+++++
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   39 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLN   39 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            4699999 999999999999999999999986

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=84.51  E-value=12  Score=39.46  Aligned_cols=31  Identities=23%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHC--CCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFK--GLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~  142 (535)
                      .|+||| |-+|.-+|..|++.  +.+|.++=|.+
T Consensus       248 rV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          248 NIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            599999 99999999999875  78999998873

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=83.99  E-value=0.67  Score=45.46  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=29.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..|.||| |..|...|..|++.|++|.++++++
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~   48 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRI   48 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4799999 9999999999999999999999874

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=83.91  E-value=0.87  Score=45.53  Aligned_cols=31  Identities=29%  Similarity=0.284  Sum_probs=29.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|...|..|++.|++|.+++|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4699999 999999999999999999999986

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=83.86  E-value=0.35  Score=41.87  Aligned_cols=31  Identities=29%  Similarity=0.496  Sum_probs=28.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |..|..+|..|++.|.+|.+++|.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            3699999 999999999999999999999986

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=83.83  E-value=0.88  Score=48.09  Aligned_cols=30  Identities=33%  Similarity=0.439  Sum_probs=28.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..|++.|++|+++|++
T Consensus         7 kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~   37 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASHGHQVLLYDIS   37 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEECC
Confidence            599999 999999999999999999999987

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=83.82  E-value=0.65  Score=45.46  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=29.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |-.|.+.|..|++.|.+|.+++|.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEec
Confidence            3699999 999999999999999999999987

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=83.66  E-value=0.94  Score=43.05  Aligned_cols=32  Identities=38%  Similarity=0.480  Sum_probs=29.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ...|.||| |-.|.++|..|++.|++|.+.+|+
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~   51 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRD   51 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35799999 999999999999999999999987

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=83.65  E-value=0.77  Score=46.85  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=29.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+|+| |.+|..+|..|...|.+|+++|+.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~  216 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVR  216 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5799999 999999999999999999999987

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=83.65  E-value=1.3  Score=43.62  Aligned_cols=31  Identities=48%  Similarity=0.723  Sum_probs=29.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|...|..|++.|++|.+++|+
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~   41 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRS   41 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5799999 999999999999999999999987

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=83.58  E-value=0.96  Score=45.09  Aligned_cols=32  Identities=28%  Similarity=0.415  Sum_probs=29.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      +..|.||| |..|.+.|..|++.|++|.+++|.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            36799999 999999999999999999999886

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=83.40  E-value=0.77  Score=44.65  Aligned_cols=31  Identities=29%  Similarity=0.363  Sum_probs=29.0

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|.||| |..|...|..|++.|++|.+++|++
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            589999 9999999999999999999999873

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=83.36  E-value=0.97  Score=44.85  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=29.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|...|..|++.|++|.++++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~   63 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRT   63 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCC
Confidence            5799999 999999999999999999999987

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=83.31  E-value=0.81  Score=47.59  Aligned_cols=30  Identities=13%  Similarity=0.299  Sum_probs=28.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|+.+|..|++ |++|+++|++
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~   67 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIV   67 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecC
Confidence            5799999 9999999999998 9999999987

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=83.25  E-value=0.63  Score=45.36  Aligned_cols=31  Identities=19%  Similarity=0.388  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |-.|...|..|.+.|.+|+|+++.
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            4699999 999999999999999999999976

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=83.15  E-value=0.91  Score=42.80  Aligned_cols=31  Identities=23%  Similarity=0.352  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |..|...|..|.+.|.+|+|+++.
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4699999 999999999999999999999875

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=83.11  E-value=2.7  Score=45.91  Aligned_cols=55  Identities=15%  Similarity=0.114  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHhCCCEEEeCceEEEEEEeC--CeEE-EEEcCCeEEEcCeEEEccC
Q 009427          204 PAKLIEIVKKRFISLGGVIFEGYSVSSICTYE--NAAV-LLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       204 ~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~--~gv~-v~~~~G~~i~a~lVV~AdG  258 (535)
                      ...+.+.|.+.+...|++++.+++|.+|..++  +.++ |...+|++++|+.||....
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~  434 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDS  434 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGG
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChh
Confidence            35788899999999999999999999998877  4444 3345689999999987443

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=82.99  E-value=0.84  Score=45.23  Aligned_cols=29  Identities=28%  Similarity=0.337  Sum_probs=27.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVER  140 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr  140 (535)
                      .|.||| |..|...|..|++.|++|.+++|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            488999 99999999999999999999998

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=82.79  E-value=1  Score=45.63  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=29.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|.+.|..|++.|++|.+++|+
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4799999 999999999999999999999986

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=82.64  E-value=1.6  Score=45.80  Aligned_cols=32  Identities=19%  Similarity=0.478  Sum_probs=29.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|+||| |..|+-+|..|++.|.+|.++++..
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~  224 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD  224 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            4799999 9999999999999999999999874

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=82.62  E-value=1.1  Score=44.23  Aligned_cols=30  Identities=37%  Similarity=0.560  Sum_probs=28.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC--cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL--RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~  141 (535)
                      .|.||| |..|.++|..|+..|+  +|.++|++
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            489999 9999999999999999  99999986

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=82.51  E-value=1.2  Score=41.41  Aligned_cols=31  Identities=32%  Similarity=0.388  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |-.|...|..|++.|++|.+++|+
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4699999 999999999999999999999886

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=82.45  E-value=1.1  Score=44.45  Aligned_cols=31  Identities=26%  Similarity=0.329  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      ..|.||| |..|..+|..|++.|+ +|.++|++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            4699999 9999999999999998 99999987

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=82.35  E-value=1.1  Score=44.71  Aligned_cols=31  Identities=29%  Similarity=0.357  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      ..|.||| |..|..+|..|++.|+ +|.++|.+
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4799999 9999999999999999 99999987

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=82.34  E-value=1  Score=45.01  Aligned_cols=31  Identities=19%  Similarity=0.285  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      ..|.||| |-.|..+|..|++.|+ +|.|+|++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4799999 9999999999999998 99999987

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=82.29  E-value=1.1  Score=46.16  Aligned_cols=31  Identities=26%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+|+| |.+|+.+|..+...|.+|+++|+.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~  204 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTR  204 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4699999 999999999999999999999987

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=82.15  E-value=0.56  Score=49.28  Aligned_cols=31  Identities=26%  Similarity=0.488  Sum_probs=29.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|||+| |-.|..+|..|...|++|+|||++
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d   35 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKD   35 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            5799999 999999999999999999999998

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=82.11  E-value=1.1  Score=45.32  Aligned_cols=31  Identities=19%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|..+|..|++.|++|.++++.
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~   54 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLN   54 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECchHHHHHHHHHHHhCCCEEEEEeCC
Confidence            5799999 999999999999999999999987

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=81.75  E-value=0.86  Score=46.91  Aligned_cols=29  Identities=31%  Similarity=0.481  Sum_probs=27.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|+.+|..|++ |++|++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~   31 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDIL   31 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECC
Confidence            488999 9999999999999 9999999986

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=81.72  E-value=1.2  Score=44.21  Aligned_cols=30  Identities=23%  Similarity=0.511  Sum_probs=27.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|.+.|..|++.|++|.++ ++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            4699999 999999999999999999999 65

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=81.65  E-value=1.3  Score=42.88  Aligned_cols=31  Identities=19%  Similarity=0.238  Sum_probs=28.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+|+| |-+|.++|..|++.|.+|.+++|.
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            3699999 999999999999999999999876

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=81.65  E-value=1.2  Score=42.61  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=29.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTL  143 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~  143 (535)
                      ..|+||| |-+|..+|..|++.|. +++|+|.+.+
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v   63 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDV   63 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            5799999 9999999999999998 6889998854

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=81.64  E-value=1.1  Score=43.99  Aligned_cols=35  Identities=26%  Similarity=0.534  Sum_probs=30.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~  144 (535)
                      ...|+||| |-.|..+|..|++.|. +++|+|.+.+.
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve   72 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVE   72 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccC
Confidence            36899999 9999999999999997 68999988543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=81.63  E-value=1.2  Score=45.19  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+|+| |.+|..+|..|...|.+|+++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~  199 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN  199 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4699999 999999999999999999999986

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=81.42  E-value=1.6  Score=43.84  Aligned_cols=35  Identities=31%  Similarity=0.623  Sum_probs=30.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~  144 (535)
                      ...|+||| |-+|..+|..|++.|. +++|+|.+.+.
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve   70 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVS   70 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEec
Confidence            35799999 9999999999999998 58899998644

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=81.37  E-value=1.5  Score=46.33  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..+|.||| |..|..+|..|++.|++|.++++.+
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            35799999 9999999999999999999999873

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=81.34  E-value=1.2  Score=45.38  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=29.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+|+| |.+|+.+|..+...|.+|.++|+.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~  204 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVR  204 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4799999 999999999999999999999987

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=81.03  E-value=1.1  Score=47.40  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=31.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~  142 (535)
                      .+|||||| |++||++|+.|+++| ++|+|+|+..
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~   42 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARD   42 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            58999999 999999999999999 9999999975

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=80.97  E-value=1.1  Score=44.33  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=29.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKG-LRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~  142 (535)
                      ..|.||| |..|..+|..|++.| ++|.++++.+
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            3699999 999999999999999 9999999873

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=80.92  E-value=1.1  Score=49.75  Aligned_cols=31  Identities=39%  Similarity=0.434  Sum_probs=29.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|.||| |..|...|..|++.|++|+++|++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~  344 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVN  344 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECC
Confidence            3699999 999999999999999999999987

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=80.85  E-value=1.4  Score=42.42  Aligned_cols=30  Identities=30%  Similarity=0.398  Sum_probs=28.0

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|.+.|..|++.|++|.+++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            488999 999999999999999999999876

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=80.84  E-value=1.3  Score=45.00  Aligned_cols=31  Identities=32%  Similarity=0.419  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+|+| |..|..+|..|+..|.+|+++|+.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~  198 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVN  198 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            4699999 999999999999999999999976

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=80.72  E-value=1.5  Score=46.47  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ...|.||| |..|..+|..|+++|++|.+++|.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~   42 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRT   42 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36799999 999999999999999999999987

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=80.61  E-value=1.5  Score=44.16  Aligned_cols=31  Identities=23%  Similarity=0.179  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|.||| |..|.+.|..|.+.|++|.+++++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~   40 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRS   40 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3599999 999999999999999999999987

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=80.55  E-value=1.4  Score=43.61  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC--cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL--RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~  141 (535)
                      ..|.||| |..|.+.|..|++.|+  +|.++|++
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~   67 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   67 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            4699999 9999999999999999  99999986

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=80.36  E-value=1.4  Score=46.40  Aligned_cols=31  Identities=35%  Similarity=0.429  Sum_probs=28.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      --|+|+| |..|..+|..|+..|.+|++.|++
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3599999 999999999999999999999876

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=80.31  E-value=1.7  Score=43.33  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=29.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      ..|.||| |..|..+|..|+..|+ +|.|+|.+
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~   37 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   37 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            4799999 9999999999999998 99999987

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=80.24  E-value=1  Score=44.09  Aligned_cols=30  Identities=30%  Similarity=0.650  Sum_probs=28.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC-----C-CcEEEEcc
Q 009427          111 FDVIVCG-GTLGIFIATALSFK-----G-LRVAIVER  140 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~-----G-~~V~liEr  140 (535)
                      ..|.||| |..|.+.|..|++.     | ++|.+++|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4799999 99999999999999     9 99999986

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=80.23  E-value=1.5  Score=43.66  Aligned_cols=31  Identities=35%  Similarity=0.329  Sum_probs=29.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      -.|.||| |..|.++|..|+..|+ +|.++|+.
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            4699999 9999999999999999 99999986

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=80.09  E-value=1.6  Score=42.92  Aligned_cols=31  Identities=26%  Similarity=0.284  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.||| |..|...|..|++.|++|.+++++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~   62 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRT   62 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4699999 999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	535
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	5e-04
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	8e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	0.001
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	0.002
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.002
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.002
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	0.002
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	0.003
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.003
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	0.003

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELL----ELVE 162
           V ++D +V G G+ G+  A   +  G R A+VE + L G         K+++       E
Sbjct: 1   VASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSE 60

Query: 163 SGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKR 214
                 D    +   KFN      +    +   + +         IEI++  
Sbjct: 61  FMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH 112

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 14/180 (7%)

Query: 113 VIVCGGTLGIFIATALSFKGLRVAIVERNT--LKGREQEWNISRKELLELVESGILVEDD 170
            +V G   G+  A  L   G+ V + ER+   L G      +  + +  L+E G+ ++  
Sbjct: 8   AVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSI 67

Query: 171 IDEATATKFNPNRCGFE---GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYS 227
              +++ ++     G        +       ++     +L    +               
Sbjct: 68  SVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHT---------SKC 118

Query: 228 VSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDP 287
           +  +        +  ++G    ++ +I A G  S V K+     +        +    D 
Sbjct: 119 LVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIETVDRMVHGRVLLIGDA 178

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 100 QSDLSDKAVGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
           Q+ L+     T DV+V G G  G   A + +  G +V ++E+  + G
Sbjct: 6   QAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIG 52

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 13/165 (7%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN---------TLKGREQEWNISRKELLE 159
             + I+ G G  G+F A  L+  G  V + +           +  G     N+       
Sbjct: 4   YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHY 63

Query: 160 LVESGILVEDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLG 219
           L ++   V+  +   T   F                  L       +++E++K      G
Sbjct: 64  LSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYG 123

Query: 220 GVIFEGYSVSSICTYENAAVL---LLAEGKILSSHLIIDAMGNFS 261
             I     VS +   +N   +   L           +I A G  S
Sbjct: 124 AKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS 168

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
           +DVIV G G     ++  LS  G +V  +++    G
Sbjct: 6   YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 41

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 110 TFDVIVCGGTL-GIFIATALSFKGLRVAIVERNTLKG--------REQEWNISRKELLEL 160
           T DV++ G    G+  A +    G +V ++E+  + G                 +  L +
Sbjct: 23  TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGI 82

Query: 161 VESGILVEDDIDEATATKFNPNRCGF 186
            +   ++ DD  +      +P     
Sbjct: 83  EDKKQIMIDDTMKGGRNINDPELVKV 108

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 21/211 (9%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN------TLKGREQEWNISRKELLELVES 163
           +DVIV G G  G+  A   + +G  V ++++                N++ +  L+ +  
Sbjct: 3   YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVK 62

Query: 164 GILVEDDIDEATATKFNPN--RCGFEGKGEIWVED----ILNLGVSPAKLIEIVKKRFIS 217
            I        +  + FN       FE  G    E+    +  +      +++ +  R   
Sbjct: 63  HIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKD 122

Query: 218 LGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVKQAFPA-GSGPL 275
           LG  I     V +I         ++L  G++L ++ ++ A+G  S       P  GS   
Sbjct: 123 LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS------VPQTGSTGD 176

Query: 276 DRTTYMFTYIDPQAGSPKLEELLERYWDLMP 306
                                + E     M 
Sbjct: 177 GYAWAEKAGHTITELFGGGVSVKEINPKEMS 207

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-ISRKELLELVE 162
           +D+IV G G+ G+  A   +    +VA+VE++ L G       + +K +     
Sbjct: 2   YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAAS 55

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 37.6 bits (86), Expect = 0.003
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
           T  V+V G G+ G   + A    G  V +V++    G
Sbjct: 19  TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG 55

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG 145
            +DVIV G G     ++  +S  G +V  ++RN   G
Sbjct: 6   EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYG 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	535
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.79
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.76
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.73
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.67
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.58
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.57
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.55
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.55
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.44
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.39
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.36
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.29
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.26
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.2
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.12
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.11
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.03
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.0
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.98
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.96
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.85
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.83
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.79
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.75
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.74
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.73
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.73
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.72
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.71
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.7
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.69
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.65
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.64
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.63
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.63
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.59
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.58
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.58
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.57
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.56
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.54
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.51
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.51
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.5
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.48
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.48
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.47
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.45
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.43
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.41
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.39
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.38
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.37
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.34
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.32
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.31
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.28
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.27
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.27
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.18
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.17
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.17
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.16
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.16
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.15
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.15
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.12
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.02
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.96
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.95
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.91
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.87
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.86
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.79
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.74
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.69
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.68
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.68
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.62
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.61
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.61
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.55
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.53
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.49
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.49
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.46
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.42
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.95
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.7
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.12
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.87
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.82
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.76
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.34
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.27
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.84
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.57
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.42
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.33
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.16
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.15
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.88
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.6
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.24
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.21
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.09
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.07
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	90.87
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	90.68
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	90.1
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	90.07
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	90.05
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	89.96
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	89.78
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.76
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	89.74
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	89.46
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	88.85
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	88.77
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	88.49
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.19
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	87.86
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	87.21
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	86.77
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	86.57
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	86.31
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	86.02
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	85.73
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	85.24
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	84.95
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	84.53
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	84.27
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	83.86
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	83.47
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	83.31
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	83.13
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	82.91
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	82.74
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	82.74
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	82.36
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.17
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	81.45
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	81.43
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	81.18
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	80.86
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	80.76
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	80.71
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	80.18

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.79  E-value=1.7e-18  Score=178.03  Aligned_cols=247  Identities=21%  Similarity=0.263  Sum_probs=151.4

Q ss_pred             CcccEEEEc-chHHHHHHHHHHH------CCCcEEEEcccCCCCCccc-cc-ccHHHHHHHHHcCCCChHhHHHHHhhhc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSF------KGLRVAIVERNTLKGREQE-WN-ISRKELLELVESGILVEDDIDEATATKF  179 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr------~G~~V~liEr~~~~~~~~~-~~-is~~~l~~L~~lGl~~~~~~~~~~~~~~  179 (535)
                      .+||||||| ||||+++|+.|||      .|++|+||||+...+.+.. +. +.++.++.+..    +..+ +......+
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p----~~~~-~~~~~~~~  105 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFP----DWKE-KGAPLNTP  105 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCT----THHH-HTCCCCEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHcc----chhh-hccccccc
Confidence            369999999 9999999999998      8999999999977665433 22 45556666511    1100 00000000


Q ss_pred             -CCCcccccccC---------cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC----
Q 009427          180 -NPNRCGFEGKG---------EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG----  245 (535)
Q Consensus       180 -~~~~~~~~~~~---------~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G----  245 (535)
                       ......+....         .........+.+....+..++.+.+...|+.+..+..+.++..+++++......+    
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  185 (380)
T d2gmha1         106 VTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGI  185 (380)
T ss_dssp             CCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEE
T ss_pred             eecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccc
Confidence             00011111000         0011122344567889999999999999999999999999988776654332110    


Q ss_pred             -------------eEEEcCeEEEccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCccCCC
Q 009427          246 -------------KILSSHLIIDAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVT  312 (535)
Q Consensus       246 -------------~~i~a~lVV~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~~  312 (535)
                                   ....++..|.+.|....+.++.                              .+.+    +....  
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~l------------------------------i~~~----~l~~~--  229 (380)
T d2gmha1         186 QKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQL------------------------------YKKF----DLRAN--  229 (380)
T ss_dssp             CTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHH------------------------------HHHT----TTTTT--
T ss_pred             cccccccccccccccccccEEEEeeeCCCcchHHH------------------------------Hhhh----hhccc--
Confidence                         1234444555544433222221                              1110    00000  


Q ss_pred             CCccchhcchhccccCCCCCCC-CccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCCCCChhchhhh-
Q 009427          313 LDNLEIQRVIYGIFPTYRDSPL-PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGDFVDSYSLSLL-  390 (535)
Q Consensus       313 ~~~~~~~r~~~g~~P~~~~~pl-~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~~~~~~~l~~l-  390 (535)
                                  ..|....... +...++++++||||++++|++|.|++.||.++..+|+.+.+++..+..+...+..+ 
T Consensus       230 ------------~~~~~G~~sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~~al~~~~~~~~~~~~~~  297 (380)
T d2gmha1         230 ------------CEPQGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHV  297 (380)
T ss_dssp             ------------SCCCCGGGGCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCC
T ss_pred             ------------cccccccccccccccCCeeEEeccccccchhhcCCeeeeeccHHHHHHHHHHHHHcCCcccchhhhhh
Confidence                        0000000011 12369999999999999999999999999999999999999999887776665543 


Q ss_pred             CCCCchhhhhHHHHHhhh
Q 009427          391 NPYMPNLSASWLFQRAMS  408 (535)
Q Consensus       391 ~~y~~~~~~~~~~~~~m~  408 (535)
                      ..|+..+..+|.++....
T Consensus       298 ~~y~~~~~~s~~~~eL~~  315 (380)
T d2gmha1         298 TEYEDNLKNSWVWKELYS  315 (380)
T ss_dssp             THHHHHHHTSHHHHHHHH
T ss_pred             hhHHHHHHhhHHHHHHHH
Confidence            456666777787765433

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.76  E-value=1.2e-17  Score=162.50  Aligned_cols=208  Identities=18%  Similarity=0.225  Sum_probs=133.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCCCC-cccccccHHHHHHHHHcCCCChHhHHHHHhh-----hcCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKGR-EQEWNISRKELLELVESGILVEDDIDEATAT-----KFNPN  182 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~~~-~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~-----~~~~~  182 (535)
                      +||+||| ||+|+++|+.|+++|+ +|+|+||.+.... .+...++...++.|.++|+  .+.+......     .+...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~   79 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGL--GPALAATAIPTHELRYIDQS   79 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTC--HHHHHHHSEEECEEEEECTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCc--hhhhHhhhcccccceeEcCC
Confidence            7999999 9999999999999996 8999999864322 2223366777888877786  2222222110     11111


Q ss_pred             -cccccc-cCcceeeeccccccCHHHHHHHHHHHHH--hCCCEEEeCceEEEEEEeCCeEEEEEcCC----eEEEcCeEE
Q 009427          183 -RCGFEG-KGEIWVEDILNLGVSPAKLIEIVKKRFI--SLGGVIFEGYSVSSICTYENAAVLLLAEG----KILSSHLII  254 (535)
Q Consensus       183 -~~~~~~-~~~~~~~~~~~~~v~~~~l~~~L~~~a~--~~G~~i~~~~~V~~i~~~~~gv~v~~~~G----~~i~a~lVV  254 (535)
                       ...... ......................+.+.+.  ..+..+..+++++.+...++++.+.+.+|    +++.+|+||
T Consensus        80 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi  159 (288)
T d3c96a1          80 GATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLV  159 (288)
T ss_dssp             SCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEE
T ss_pred             CCEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceee
Confidence             110000 0000000000111222333333333332  35778899999999999999998888665    479999999


Q ss_pred             EccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhccccCCCCCCC
Q 009427          255 DAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL  334 (535)
Q Consensus       255 ~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl  334 (535)
                      +|||.+|.+++........    .          .                        .          ..+.      
T Consensus       160 ~ADG~~S~vr~~~~~~~~~----~----------~------------------------~----------~~~~------  185 (288)
T d3c96a1         160 GADGIHSAVRAHLHPDQRP----L----------R------------------------D----------PLPH------  185 (288)
T ss_dssp             ECCCTTCHHHHHHCTTCCC----C----------C------------------------C----------CCSC------
T ss_pred             ccCCccceeeeeecccccc----c----------c------------------------c----------cccc------
Confidence            9999999998775332100    0          0                        0          0000      


Q ss_pred             CccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427          335 PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYE  375 (535)
Q Consensus       335 ~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~  375 (535)
                       ...++++++|||+|.++|+.|||++++++|+..|+..|.+
T Consensus       186 -~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~~  225 (288)
T d3c96a1         186 -WGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR  225 (288)
T ss_dssp             -CCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             -cccCcceecccccceeCCccccchhhhhhhHHHHHHHHhh
Confidence             1146789999999999999999999999999999988754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.73  E-value=2.5e-18  Score=173.28  Aligned_cols=243  Identities=16%  Similarity=0.141  Sum_probs=127.3

Q ss_pred             cccEEEEc-chHHHHHHHHHH-----HCCCcEEEEcccCCCC-CcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALS-----FKGLRVAIVERNTLKG-REQEWNISRKELLELVESGILVEDDIDEATATKFNPN  182 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LA-----r~G~~V~liEr~~~~~-~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~  182 (535)
                      .|||+||| ||+|+++|..||     ++|++|+||||.+... ..+...+++..++.|..+|+++  ++   ........
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~~~~~~L~~lGl~~--~i---~~~~~~~~   81 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLAD--KI---LSEANDMS   81 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHH--HH---HTTCBCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECHHHHHHHHHcCChH--HH---HhhcCCcc
Confidence            69999999 999999999997     5799999999986432 2334457888888888889832  22   11111111


Q ss_pred             cccccc---cCcce-----------eeeccccccCHHHHHHHHHHHHHhCC-CEEEeCceEEEEEEeCCeEEEEEcCCeE
Q 009427          183 RCGFEG---KGEIW-----------VEDILNLGVSPAKLIEIVKKRFISLG-GVIFEGYSVSSICTYENAAVLLLAEGKI  247 (535)
Q Consensus       183 ~~~~~~---~~~~~-----------~~~~~~~~v~~~~l~~~L~~~a~~~G-~~i~~~~~V~~i~~~~~gv~v~~~~G~~  247 (535)
                      ...+..   .....           ........++...+...+.+.+.+.. ......+.+               .+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------~~~~  146 (360)
T d1pn0a1          82 TIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPL---------------IPEK  146 (360)
T ss_dssp             EEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSE---------------EEEE
T ss_pred             eeEEEecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEec---------------ccce
Confidence            111100   00000           00011223566777777777665431 111111111               1235


Q ss_pred             EEcCeEEEccCCChHHHHHh-CCCCCCCCCceeEEEEEecCCCCCC-ChHHHHH--HHhhhccCccCCCCCccch--hcc
Q 009427          248 LSSHLIIDAMGNFSPVVKQA-FPAGSGPLDRTTYMFTYIDPQAGSP-KLEELLE--RYWDLMPEYQGVTLDNLEI--QRV  321 (535)
Q Consensus       248 i~a~lVV~AdG~~S~v~~~~-~p~~~~~~~~~~~~~~y~~~~~~~~-~l~~~~~--~~~~~~P~~~~~~~~~~~~--~r~  321 (535)
                      +.++.+++|||..|.++... +.....   ...+.+.. ....... .......  ...+.+|.....  .++..  .+.
T Consensus       147 ~~~d~~~~~dg~~s~v~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  220 (360)
T d1pn0a1         147 MEIDSSKAEDPEAYPVTMTLRYMSEDE---STPLQFGH-KTENGLFRSNLQTQEEEDANYRLPEGKEA--GEIETVHCKY  220 (360)
T ss_dssp             EEECGGGTTCTTCCCEEEEEEECCGGG---SCCCTTCC-CCCSSSCCCHHHHHHHHHTSCCCSTTCCT--TCEEEEEEEE
T ss_pred             EEeeEEEEeecCCcceEEEEEEeeccc---ccceeeee-ecCCCceEEeeecCCcccceeecCcccch--hhHHHHHHHh
Confidence            78999999999988765431 111000   00000000 0000000 0011111  112223332211  11100  000


Q ss_pred             hhcc----------ccCCCCCCCCcc--CCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhC
Q 009427          322 IYGI----------FPTYRDSPLPAA--FNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRG  379 (535)
Q Consensus       322 ~~g~----------~P~~~~~pl~~~--~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~  379 (535)
                      ..+.          .+... .....+  .+|++++|||||.++|+.|||+|++++|+..|+++|..+++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~  289 (360)
T d1pn0a1         221 VIGCDGGHSWVRRTLGFEM-IVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTG  289 (360)
T ss_dssp             EEECCCTTCHHHHHHTCCC-EECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcCcccccchhhccccccc-chhhheeecCcEEEccCcccccccccCCCCcccHHHHHHHHHHHHHHhcC
Confidence            0010          00000 011112  489999999999999999999999999999999999888764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.67  E-value=1.2e-16  Score=157.06  Aligned_cols=202  Identities=16%  Similarity=0.166  Sum_probs=138.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC---CCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK---GREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCG  185 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~---~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~  185 (535)
                      ++||+||| ||+|+++|+.|+++|++|+||||.+..   +..+...++...++.|.++|+.+  .+..... ...  ...
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~--~l~~~~~-~~~--~~~   76 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR--RMARDGL-VHE--GVE   76 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCH--HHHHHCE-EES--CEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchH--HHHhhcc-ccc--ceE
Confidence            47999999 999999999999999999999998521   12233446778888888889842  2222111 111  111


Q ss_pred             ccccC-------cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEE-EeCCeEEEEE-cCCe--EEEcCeEE
Q 009427          186 FEGKG-------EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSIC-TYENAAVLLL-AEGK--ILSSHLII  254 (535)
Q Consensus       186 ~~~~~-------~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~-~~~~gv~v~~-~~G~--~i~a~lVV  254 (535)
                      +....       .........+.+.+..+.+.|.+.+.+.+..+..++.++... .+++++.|++ .+|+  +++||+||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vV  156 (292)
T d1k0ia1          77 IAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIA  156 (292)
T ss_dssp             EEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEE
T ss_pred             EEecccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEE
Confidence            11000       000011223456788899999999999888777776655543 3445666665 3553  58899999


Q ss_pred             EccCCChHHHHHhCCCCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhccccCCCCCCC
Q 009427          255 DAMGNFSPVVKQAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPL  334 (535)
Q Consensus       255 ~AdG~~S~v~~~~~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl  334 (535)
                      +|||.+|.++++. +.                                                        +       
T Consensus       157 gADG~~S~vR~~i-~~--------------------------------------------------------~-------  172 (292)
T d1k0ia1         157 GCDGFHGISRQSI-PA--------------------------------------------------------E-------  172 (292)
T ss_dssp             ECCCTTCSTGGGS-CG--------------------------------------------------------G-------
T ss_pred             ECCCCCCccccee-ee--------------------------------------------------------c-------
Confidence            9999999776541 10                                                        0       


Q ss_pred             CccCCCeeEeecCCCcccccccccchHHHHHHHHHHHHHHHHHhCC
Q 009427          335 PAAFNRILQFGDASGIQSPVSFGGFGSLTRHLGRLSTGVYEAVRGD  380 (535)
Q Consensus       335 ~~~~~rvlliGDAA~~~~P~~G~Gi~~al~da~~La~~l~~al~~~  380 (535)
                      ....++..+.||++|.++|..++|.|.++.|+..++..+...+..+
T Consensus       173 ~~~~~~~~~~~~~~~~~~p~~~~~~n~~~~d~~~l~~~~~~~~~~~  218 (292)
T d1k0ia1         173 RMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREG  218 (292)
T ss_dssp             GSEETTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccceeeeeecCCccccccccccccccccccceeeEecCC
Confidence            0013556779999999999999999999999999999888777654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.58  E-value=2.7e-14  Score=137.46  Aligned_cols=199  Identities=16%  Similarity=0.104  Sum_probs=128.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc--ccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE--QEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~--~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      .-.|+||| ||+|+++|+.|+++|++|+|+||++.....  ....++...++.|.++|+...     .............
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~-----~~~~~~~~~~~~~   78 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELD-----SISVPSSSMEYVD   78 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGG-----GTCBCCCEEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchh-----hhccCCCcceeEe
Confidence            45799999 999999999999999999999997532222  222356677777777786321     0000000000000


Q ss_pred             cccCc-ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHH
Q 009427          187 EGKGE-IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVK  265 (535)
Q Consensus       187 ~~~~~-~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~  265 (535)
                      ...+. ...............+...+..  ...+..++.+++|+++..++++++++++||.+++++++|+|||.+|.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~~r~  156 (265)
T d2voua1          79 ALTGERVGSVPADWRFTSYDSIYGGLYE--LFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRK  156 (265)
T ss_dssp             TTTCCEEEEEECCCCEEEHHHHHHHHHH--HHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHHHH
T ss_pred             ccCCceecccccccccchhHHHHHHHHH--hcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccccccc
Confidence            00111 1000111111122223333322  23467889999999999988999999999999999999999999998876


Q ss_pred             HhCCCCCCCCCceeEEEEEecCCCCCCChHHHHHHHhhhccCccCCCCCccchhcchhccccCCCCCCCCccCCCeeEee
Q 009427          266 QAFPAGSGPLDRTTYMFTYIDPQAGSPKLEELLERYWDLMPEYQGVTLDNLEIQRVIYGIFPTYRDSPLPAAFNRILQFG  345 (535)
Q Consensus       266 ~~~p~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~r~~~g~~P~~~~~pl~~~~~rvlliG  345 (535)
                      ..++....                                        .                    ......+...|
T Consensus       157 ~~~~~~~~----------------------------------------~--------------------~~~~~~~~~~~  176 (265)
T d2voua1         157 RLLGIETV----------------------------------------D--------------------RMVHGRVLLIG  176 (265)
T ss_dssp             HHHCCCCC----------------------------------------S--------------------CSEETTEEECG
T ss_pred             cccccccc----------------------------------------c--------------------ccccccccccc
Confidence            54322000                                        0                    00023456679


Q ss_pred             cCCCcccccccccchHHHHHHHHHHHHHHH
Q 009427          346 DASGIQSPVSFGGFGSLTRHLGRLSTGVYE  375 (535)
Q Consensus       346 DAA~~~~P~~G~Gi~~al~da~~La~~l~~  375 (535)
                      |++|...|..++|.+.++.|+..++..+..
T Consensus       177 ~~a~~~~p~~~~g~~~~~~d~~~l~~~l~~  206 (265)
T d2voua1         177 DAAVTPRPHAAAGGAKASDDARTLAEVFTK  206 (265)
T ss_dssp             GGTSBCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccceeeeccHHHHHHHHhh
Confidence            999999999999999999999988886643

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.57  E-value=6.7e-15  Score=143.68  Aligned_cols=67  Identities=12%  Similarity=0.121  Sum_probs=59.5

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQ  266 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~  266 (535)
                      ...+++..+...|.+.+++.|++++++++|++++.+++++.|.+++| ++.|+.||+|+|++|.-...
T Consensus       144 ~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~~l~~  210 (281)
T d2gf3a1         144 SGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLS  210 (281)
T ss_dssp             CEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGG
T ss_pred             cccccccccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcchhhHH
Confidence            34578999999999999999999999999999999999999998666 69999999999999876544

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.55  E-value=2.1e-14  Score=139.45  Aligned_cols=70  Identities=20%  Similarity=0.185  Sum_probs=60.5

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChHHHHHhCC
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSPVVKQAFP  269 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~v~~~~~p  269 (535)
                      ...+++..+.+.|.+.+.+.|++++++++|++|+.+++.+.|++++| +++||.||+|+|++|+-..+.++
T Consensus       145 ~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G  214 (276)
T d1ryia1         145 DVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLG  214 (276)
T ss_dssp             CCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTT
T ss_pred             ceeeecccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcC
Confidence            44589999999999999999999999999999987777888888655 79999999999999987665444

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.55  E-value=1.1e-14  Score=139.64  Aligned_cols=148  Identities=22%  Similarity=0.295  Sum_probs=90.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcc------cccc-cHHHHHHHHHcCCCChHhHHHHHhhhcCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQ------EWNI-SRKELLELVESGILVEDDIDEATATKFNP  181 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~------~~~i-s~~~l~~L~~lGl~~~~~~~~~~~~~~~~  181 (535)
                      +||||||| ||+|+++|+.|+++|++|+||||+...+...      ..+. .......+................ .+..
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   80 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFS-IFNN   80 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHH-HSCH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhh-hhhh
Confidence            59999999 9999999999999999999999985432110      0000 000111111101000000010000 0000


Q ss_pred             C---------cccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcC
Q 009427          182 N---------RCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSH  251 (535)
Q Consensus       182 ~---------~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~  251 (535)
                      .         .+.+........   .........+.+.|.+++++.|++++++++|+++..+++.+. |.+++|++++||
T Consensus        81 ~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~  157 (251)
T d2i0za1          81 EDIITFFENLGVKLKEEDHGRM---FPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN  157 (251)
T ss_dssp             HHHHHHHHHTTCCEEECGGGEE---EETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS
T ss_pred             HHHHHHHHhcCCccccccccce---ecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecC
Confidence            0         000000000000   011234567888999999999999999999999998887764 677788899999


Q ss_pred             eEEEccCCCh
Q 009427          252 LIIDAMGNFS  261 (535)
Q Consensus       252 lVV~AdG~~S  261 (535)
                      .||+|||..|
T Consensus       158 ~vI~AtGg~S  167 (251)
T d2i0za1         158 HVVIAVGGKS  167 (251)
T ss_dssp             CEEECCCCSS
T ss_pred             eEEEccCCcc
Confidence            9999999887

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.44  E-value=6.2e-13  Score=131.01  Aligned_cols=69  Identities=16%  Similarity=0.239  Sum_probs=59.5

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCChHHHHHhC
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFSPVVKQAF  268 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S~v~~~~~  268 (535)
                      ...+++..+...+.+.+.+.|++++++++|++++.++++++ |.+++| +++||.||+|+|++|+-..+.+
T Consensus       142 ~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~  211 (305)
T d1pj5a2         142 DGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMI  211 (305)
T ss_dssp             CEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTT
T ss_pred             ccccchhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHc
Confidence            44579999999999999999999999999999999988865 666444 7999999999999998766543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.39  E-value=1.6e-13  Score=132.07  Aligned_cols=142  Identities=19%  Similarity=0.209  Sum_probs=85.4

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc------cccccc-------------HHHHH-HHHHcCCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE------QEWNIS-------------RKELL-ELVESGILV  167 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~------~~~~is-------------~~~l~-~L~~lGl~~  167 (535)
                      +.+|||||| ||+|+++|+.|+++|++|+||||.+..+..      ...++.             .+.++ .+..   +.
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~---~~   79 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALAR---YT   79 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHH---SC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhh---hc
Confidence            368999999 999999999999999999999998543210      001100             00000 0100   00


Q ss_pred             hHhHHHHHhhhcCCCcccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE---EEEcC
Q 009427          168 EDDIDEATATKFNPNRCGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV---LLLAE  244 (535)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~---v~~~~  244 (535)
                      ........ ..+.   ..+.........    ..-....+.+.|.+.+++.|++++++++|++++..+++..   +...+
T Consensus        80 ~~~~~~~~-~~~g---~~~~~~~~~~~~----~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~  151 (253)
T d2gqfa1          80 NWDFISLV-AEQG---ITYHEKELGQLF----CDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVN  151 (253)
T ss_dssp             HHHHHHHH-HHTT---CCEEECSTTEEE----ETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEET
T ss_pred             ccchhhhh-hhcC---cceeeecCCccc----cccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecC
Confidence            00000000 0010   001001110100    1123567888999999999999999999999987665421   22336


Q ss_pred             CeEEEcCeEEEccCCCh
Q 009427          245 GKILSSHLIIDAMGNFS  261 (535)
Q Consensus       245 G~~i~a~lVV~AdG~~S  261 (535)
                      +.+++||.||+|+|..|
T Consensus       152 ~~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         152 STQWQCKNLIVATGGLS  168 (253)
T ss_dssp             TEEEEESEEEECCCCSS
T ss_pred             CEEEEeCEEEEcCCccc
Confidence            78899999999999876

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.36  E-value=1e-11  Score=122.38  Aligned_cols=155  Identities=14%  Similarity=0.145  Sum_probs=89.2

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc-------cc-----------HH-HHHHHHHc--CCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN-------IS-----------RK-ELLELVES--GIL  166 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~-------is-----------~~-~l~~L~~l--Gl~  166 (535)
                      ++||||||| |++|+++|+.|+++|++|+||||.+..++...+.       .+           .. ..+.....  ++.
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~   94 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN   94 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhcc
Confidence            369999999 9999999999999999999999997654432111       01           11 11111111  121


Q ss_pred             ChHhHHHHH-------h--hhcCCC--cccccccCc-ceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe
Q 009427          167 VEDDIDEAT-------A--TKFNPN--RCGFEGKGE-IWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY  234 (535)
Q Consensus       167 ~~~~~~~~~-------~--~~~~~~--~~~~~~~~~-~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~  234 (535)
                      +++.+....       .  ..+.-.  ......... ...............+.+.+.+.+++.|++++++++|+++..+
T Consensus        95 d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~  174 (308)
T d1y0pa2          95 DPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKD  174 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC
T ss_pred             chHHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhh
Confidence            211111110       0  011000  000000000 0000111122234568888999999999999999999999887


Q ss_pred             CCe-E---EEEEcCC--eEEEcCeEEEccCCChHH
Q 009427          235 ENA-A---VLLLAEG--KILSSHLIIDAMGNFSPV  263 (535)
Q Consensus       235 ~~g-v---~v~~~~G--~~i~a~lVV~AdG~~S~v  263 (535)
                      +++ +   ++.-.++  ..++|+.||+|+|.++..
T Consensus       175 ~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n  209 (308)
T d1y0pa2         175 DKGTVKGILVKGMYKGYYWVKADAVILATGGFAKN  209 (308)
T ss_dssp             TTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTC
T ss_pred             cccccccccccccccceeEeecCeEEEccCccccc
Confidence            764 2   2222233  368999999999988743

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.29  E-value=4.4e-11  Score=118.74  Aligned_cols=152  Identities=14%  Similarity=0.193  Sum_probs=89.9

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c---------------cHH-HHHHHHHc--CC
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I---------------SRK-ELLELVES--GI  165 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i---------------s~~-~l~~L~~l--Gl  165 (535)
                      ++++|||||| |++|+++|+.|+++|++|+||||.+..++...+.   +               +.. .++.+...  ++
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~  100 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNI  100 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccc
Confidence            3469999999 9999999999999999999999987654432211   0               111 11111111  12


Q ss_pred             CChHhHHHHHh---------hhcCCCcccccc----cC-cc-eeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEE
Q 009427          166 LVEDDIDEATA---------TKFNPNRCGFEG----KG-EI-WVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSS  230 (535)
Q Consensus       166 ~~~~~~~~~~~---------~~~~~~~~~~~~----~~-~~-~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~  230 (535)
                      .+++.+.....         ..+.   +.|..    .+ .. ..............+.+.|.+.+.+.|++|+++++|++
T Consensus       101 ~d~~~~~~~~~~~~~~i~~l~~~G---v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~  177 (322)
T d1d4ca2         101 NDPELVKVLANNSSDSIDWLTSMG---ADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVR  177 (322)
T ss_dssp             SCHHHHHHHHHTHHHHHHHHHHTT---CCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred             cCHHHhhhhhhhhhhhhhhhhhhc---ccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeeccc
Confidence            12221111110         0000   00100    00 00 00011112233567888999999999999999999999


Q ss_pred             EEEeCCe----EEEEEcCC--eEEEcCeEEEccCCChH
Q 009427          231 ICTYENA----AVLLLAEG--KILSSHLIIDAMGNFSP  262 (535)
Q Consensus       231 i~~~~~g----v~v~~~~G--~~i~a~lVV~AdG~~S~  262 (535)
                      +..++++    +++.-.++  ..+.|+.||+|+|.++.
T Consensus       178 li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~  215 (322)
T d1d4ca2         178 ILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  215 (322)
T ss_dssp             EECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             ccccccccccceEEEeecccEEEEeCCeEEEcCCCccc
Confidence            9876553    33333333  35899999999998874

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.26  E-value=5.1e-11  Score=118.18  Aligned_cols=154  Identities=13%  Similarity=0.131  Sum_probs=89.0

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCccccc---c---------------cH-HHHHHHHHcC--CC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWN---I---------------SR-KELLELVESG--IL  166 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~---i---------------s~-~~l~~L~~lG--l~  166 (535)
                      +++|||||| |++|+++|+.|+++|.+|+||||.+..+....+.   +               +. ..++.+...+  +.
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~   97 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN   97 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhcccc
Confidence            369999999 9999999999999999999999997655432211   0               11 1112222211  22


Q ss_pred             ChHhHHHHHhh-----hc-CCCcccccc--cCcce----eeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEe
Q 009427          167 VEDDIDEATAT-----KF-NPNRCGFEG--KGEIW----VEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTY  234 (535)
Q Consensus       167 ~~~~~~~~~~~-----~~-~~~~~~~~~--~~~~~----~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~  234 (535)
                      +.+.++.....     .+ ..-.+.|..  .....    .............+.+.|.+++++.|++++++++++++..+
T Consensus        98 d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~  177 (317)
T d1qo8a2          98 DIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN  177 (317)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC
T ss_pred             chhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeec
Confidence            22211111100     00 000001100  00000    00000111123468889999999999999999999999876


Q ss_pred             CCeE----EEEEcCC--eEEEcCeEEEccCCChH
Q 009427          235 ENAA----VLLLAEG--KILSSHLIIDAMGNFSP  262 (535)
Q Consensus       235 ~~gv----~v~~~~G--~~i~a~lVV~AdG~~S~  262 (535)
                      +++.    ++...++  ..+.|+.||.|+|.++.
T Consensus       178 ~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  211 (317)
T d1qo8a2         178 DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  211 (317)
T ss_dssp             TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             ccccceeeEeecccceEEEEeccceEEecccccc
Confidence            6642    2333344  35899999999998763

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=1.8e-10  Score=107.49  Aligned_cols=50  Identities=10%  Similarity=0.066  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--EEEEEcCCeEEEcCeEEE
Q 009427          206 KLIEIVKKRFISLGGVIFEGYSVSSICTYENA--AVLLLAEGKILSSHLIID  255 (535)
Q Consensus       206 ~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v~v~~~~G~~i~a~lVV~  255 (535)
                      .+.+.|.+.+++.|++|+.+++|++|..++++  ++..+.+|++++||.||.
T Consensus       237 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~  288 (297)
T d2bcgg1         237 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIA  288 (297)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEE
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEE
Confidence            46788889999999999999999999876543  544456889999999875

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.11  E-value=3.3e-10  Score=112.54  Aligned_cols=58  Identities=12%  Similarity=0.171  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEE-EEE---cCC--eEEEcCeEEEccCCChH
Q 009427          205 AKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAV-LLL---AEG--KILSSHLIIDAMGNFSP  262 (535)
Q Consensus       205 ~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~-v~~---~~G--~~i~a~lVV~AdG~~S~  262 (535)
                      ..+...|.+.+.+.|++++++++++++..+++.++ +.+   .+|  ..+.|+-||.|+|.++.
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~  221 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEecccccc
Confidence            56778889999999999999999999988887654 222   356  35899999999998763

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.03  E-value=1.1e-10  Score=114.82  Aligned_cols=134  Identities=19%  Similarity=0.209  Sum_probs=85.2

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      +++|||||| |++|+++|+.|.++|++|+|+||..-.++  .|...+     .  -|+-.    +. -...+.     +.
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGG--tW~~n~-----y--pg~~~----d~-~~~~~~-----~s   66 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG--VWYWNR-----Y--PGARC----DI-ESIEYC-----YS   66 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--HHHHCC-----C--TTCBC----SS-CTTTSS-----CC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccc--ccccCC-----C--CCcee----cc-cccccc-----cc
Confidence            479999999 99999999999999999999999853332  121000     0  01100    00 000000     00


Q ss_pred             ccCccee-eeccccccCHHHHHHHHHHHHHhCCC--EEEeCceEEEEEEeC--CeEEEEEcCCeEEEcCeEEEccCCCh
Q 009427          188 GKGEIWV-EDILNLGVSPAKLIEIVKKRFISLGG--VIFEGYSVSSICTYE--NAAVLLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       188 ~~~~~~~-~~~~~~~v~~~~l~~~L~~~a~~~G~--~i~~~~~V~~i~~~~--~gv~v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      .....+. .+....-.....+.+.|.+.+.+.+.  .|..+++|+++..++  +.+.|++.++.++++|.||.|+|..|
T Consensus        67 ~~~~~~~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1          67 FSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS  145 (298)
T ss_dssp             SCHHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             ccccccCCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccc
Confidence            0000000 00001112345677778888888776  589999999998654  46899998888999999999999755

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=1.6e-09  Score=107.10  Aligned_cols=153  Identities=12%  Similarity=0.104  Sum_probs=84.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCccccc---c--------cH-HHHHHHHHcC--CCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWN---I--------SR-KELLELVESG--ILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~---i--------s~-~~l~~L~~lG--l~~~~~~~  172 (535)
                      ++|||||| |+||+++|+.++++  |.+|+||||....+++..+.   +        +. ..++.....|  +.+++.++
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~~~v~   84 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVD   84 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccHHHHHH
Confidence            58999999 99999999999986  78999999986554432221   0        11 1222222222  32332222


Q ss_pred             HHHh---------hh----cCCC-cccccccC-cceeeec-cccc-cCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEe
Q 009427          173 EATA---------TK----FNPN-RCGFEGKG-EIWVEDI-LNLG-VSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTY  234 (535)
Q Consensus       173 ~~~~---------~~----~~~~-~~~~~~~~-~~~~~~~-~~~~-v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~  234 (535)
                      ....         ..    |... ...+.... ......+ .... .....+...+.+++.+. ++++++++.++++..+
T Consensus        85 ~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d  164 (311)
T d1kf6a2          85 YFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD  164 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE
T ss_pred             HHHHhhhHhHHhhhhcccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEeeeeEec
Confidence            1111         11    1100 00000000 0000000 0000 11234455555555554 7899999999999888


Q ss_pred             CCeEE--EE--EcCCe--EEEcCeEEEccCCChH
Q 009427          235 ENAAV--LL--LAEGK--ILSSHLIIDAMGNFSP  262 (535)
Q Consensus       235 ~~gv~--v~--~~~G~--~i~a~lVV~AdG~~S~  262 (535)
                      ++.++  +.  ..+|+  .+.|+.||.|+|.++.
T Consensus       165 ~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~  198 (311)
T d1kf6a2         165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (311)
T ss_dssp             TTEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             CCcceeEEEEEcCCCcEEEEECCEEEEcCCCccc
Confidence            77554  11  24564  5789999999998764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.1e-09  Score=109.05  Aligned_cols=152  Identities=16%  Similarity=0.161  Sum_probs=87.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc---c----------ccHH-HHHHHHH--cCCCChHhHH
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW---N----------ISRK-ELLELVE--SGILVEDDID  172 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~---~----------is~~-~l~~L~~--lGl~~~~~~~  172 (535)
                      +||||||| |++||++|+.++++|.+|+||||.+..+.+..+   .          -+.. ..+....  .++.+++.++
T Consensus         7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~aG~~l~d~~~v~   86 (330)
T d1neka2           7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE   86 (330)
T ss_dssp             EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHHTSCSCHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcHHHHhhhHheEcCCCCCCCHHHHHHHHHHhhhhccCHHHHH
Confidence            69999999 999999999999999999999998655433221   1          0111 1222222  1233332222


Q ss_pred             HHHh---------hh----cCC---CcccccccCcceee-------ecccccc--CHHHHHHHHHHHHHhCCCEEEeCce
Q 009427          173 EATA---------TK----FNP---NRCGFEGKGEIWVE-------DILNLGV--SPAKLIEIVKKRFISLGGVIFEGYS  227 (535)
Q Consensus       173 ~~~~---------~~----~~~---~~~~~~~~~~~~~~-------~~~~~~v--~~~~l~~~L~~~a~~~G~~i~~~~~  227 (535)
                      ....         ..    |..   +..... ....+..       .+.....  .-..+...|.+++.+.+++++.++.
T Consensus        87 ~l~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~-~~g~~s~~~~~~~~~~~~~~~d~~G~~i~~~L~~~~~~~~v~~~~~~~  165 (330)
T d1neka2          87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQR-PFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY  165 (330)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCBCSCBTTBCC-CSSBCEEECTTSSSEEEECCTTCHHHHHHHHHHHHHHHTTCEEECSEE
T ss_pred             HHHHHhHHHHHHHhhccccccccCCCceehh-ccCcccccccCcccccccccCCccHHHHHHHHHHHHHhcCCeEEEEEE
Confidence            1110         11    110   000000 0000000       0101111  1246778899999999999999999


Q ss_pred             EEEEEEeCCe-EE----EEEcCC--eEEEcCeEEEccCCChH
Q 009427          228 VSSICTYENA-AV----LLLAEG--KILSSHLIIDAMGNFSP  262 (535)
Q Consensus       228 V~~i~~~~~g-v~----v~~~~G--~~i~a~lVV~AdG~~S~  262 (535)
                      ++.+..++++ +.    ....+|  ..+.|+.||.|+|....
T Consensus       166 ~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~  207 (330)
T d1neka2         166 ALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR  207 (330)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGG
T ss_pred             EEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccc
Confidence            9998775543 22    122345  35899999999998764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=2.3e-09  Score=100.56  Aligned_cols=120  Identities=19%  Similarity=0.188  Sum_probs=72.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .||||||| |+||+.||+++||.|.+|+||+++.........|-.         .|....    ..+.+...+       
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~---------~gg~~k----g~l~reid~-------   61 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPK---------PPFPPG----SLLERAYDP-------   61 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCC---------SCCCTT----CHHHHHCCT-------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCc---------cccCCC----cceeeeeec-------
Confidence            49999999 999999999999999999999987321111111100         010000    001111110       


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEcCCeEEEcCeEEEccCCCh
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLAEGKILSSHLIIDAMGNFS  261 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~-v~~~~G~~i~a~lVV~AdG~~S  261 (535)
                      .+.    ..       ..+...+.+...+. +..++ ..+|+++..+++.+. |.+.+|.++.|+.||+|+|.+.
T Consensus        62 kG~----av-------~a~raQ~k~~l~~~~nL~i~-q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          62 KDE----RV-------WAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             TCC----CH-------HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             cch----hh-------hhHHHHHHHHHhhhcCHHHH-hccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence            000    00       01112233333333 55666 457889888888765 7788898999999999999764

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=4.2e-09  Score=103.27  Aligned_cols=38  Identities=21%  Similarity=0.423  Sum_probs=32.8

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGRE  147 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~  147 (535)
                      .+||||||| |++|+++|+.+++.| +|+||||.+..+++
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~   44 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGS   44 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC--
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCc
Confidence            369999999 999999999999988 99999999765543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.8e-08  Score=84.39  Aligned_cols=92  Identities=16%  Similarity=0.204  Sum_probs=73.0

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |++|+-+|..|++.|.+|+|+|+.+....                 . ++                       
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~-----------------~-~d-----------------------   61 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-----------------S-FD-----------------------   61 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----------------T-SC-----------------------
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecchhhh-----------------h-cc-----------------------
Confidence            599999 99999999999999999999999731100                 0 00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCeEEEcCeEEEccC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                                    ..+.+.+.+.+++.|++++.++.|+.+..+++ .+++++++|+++.+|.||.|+|
T Consensus        62 --------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          62 --------------PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             --------------HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             --------------hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence                          11224566667778999999999999987665 4678888999999999999998

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.79  E-value=5.3e-09  Score=98.76  Aligned_cols=35  Identities=34%  Similarity=0.480  Sum_probs=32.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLK  144 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~  144 (535)
                      +.+||||| |++|+++|+.|+++|++|+||||+..+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~   41 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            46899999 999999999999999999999998644

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.75  E-value=6e-08  Score=81.55  Aligned_cols=93  Identities=17%  Similarity=0.177  Sum_probs=73.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.++||| |+.|+-+|..|++.|.+|+++|+....-.                 + ++                      
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~-----------------~-~d----------------------   62 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-----------------A-VD----------------------   62 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----------------T-SC----------------------
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC-----------------c-cc----------------------
Confidence            3699999 99999999999999999999998721100                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC---eEEEcCeEEEccC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG---KILSSHLIIDAMG  258 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G---~~i~a~lVV~AdG  258 (535)
                                     ..+.+.+.+.+++.|++++.+++|++++.+++++++++.++   +++.||.||.|.|
T Consensus        63 ---------------~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          63 ---------------EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ---------------HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             ---------------chhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence                           01224456667788999999999999998888888887543   5799999999998

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-08  Score=99.45  Aligned_cols=44  Identities=14%  Similarity=0.083  Sum_probs=39.3

Q ss_pred             HhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          216 ISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       216 ~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      ++.|++++.+++|++|..+++++.|++.+|++++||.||.|...
T Consensus       218 ~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         218 DLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCG
T ss_pred             HHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCH
Confidence            34588999999999999888999999999999999999999763

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.73  E-value=1e-08  Score=101.94  Aligned_cols=60  Identities=12%  Similarity=-0.057  Sum_probs=48.9

Q ss_pred             cCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC------eEEEcCeEEEccCCCh
Q 009427          202 VSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG------KILSSHLIIDAMGNFS  261 (535)
Q Consensus       202 v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G------~~i~a~lVV~AdG~~S  261 (535)
                      ..+..+.+.|...+...+..|+.+++|++++.+++++.|+++++      .+..+|.||+|+|.+|
T Consensus       110 ~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         110 PHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             CBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             CchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            34667778888878777888999999999999999988877532      2467999999999887

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.73  E-value=3.8e-08  Score=95.03  Aligned_cols=132  Identities=14%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHC-CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCC----hHhHHHHHhhhcCCCc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFK-GLRVAIVERNTLKGREQEWNISRKELLELVESGILV----EDDIDEATATKFNPNR  183 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~-G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~----~~~~~~~~~~~~~~~~  183 (535)
                      ++||+||| ||+|+++|+.||++ |++|+|||+.+..++. .++-.          .+++    ........ ..+.   
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~-~~~~g----------~~~~~~~~~~~~~~~~-~~~g---   97 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG-AWLGG----------QLFSAMIVRKPAHLFL-DEIG---   97 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT-TTCCS----------TTCCCEEEETTTHHHH-HHHT---
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCc-eeecC----------EEcCHHHHhhhHHHHH-HHcC---
Confidence            69999999 99999999999984 9999999998643321 11100          0000    00000000 0000   


Q ss_pred             ccccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE---EE------------cCCeEE
Q 009427          184 CGFEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL---LL------------AEGKIL  248 (535)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v---~~------------~~G~~i  248 (535)
                      +.+......+     ........+...+.+.+...+..++.++.+..+...++.+.-   ..            .++.++
T Consensus        98 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~  172 (278)
T d1rp0a1          98 VAYDEQDTYV-----VVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVM  172 (278)
T ss_dssp             CCCEECSSEE-----EESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEE
T ss_pred             CceecCCccc-----eecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceee
Confidence            0010011100     111123445556666666678889999999988877765431   11            023579


Q ss_pred             EcCeEEEccCCCh
Q 009427          249 SSHLIIDAMGNFS  261 (535)
Q Consensus       249 ~a~lVV~AdG~~S  261 (535)
                      .++.+|+|+|...
T Consensus       173 ~a~~vv~a~G~~~  185 (278)
T d1rp0a1         173 EAKIVVSSCGHDG  185 (278)
T ss_dssp             EEEEEEECCCSSS
T ss_pred             ccceEEECcCCCc
Confidence            9999999999643

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.72  E-value=3.3e-08  Score=94.42  Aligned_cols=43  Identities=21%  Similarity=0.256  Sum_probs=33.2

Q ss_pred             CCCEEEeCceEEEEEEeCCeEEEEEc-CC--eEEEcCeEEEccCCC
Q 009427          218 LGGVIFEGYSVSSICTYENAAVLLLA-EG--KILSSHLIIDAMGNF  260 (535)
Q Consensus       218 ~G~~i~~~~~V~~i~~~~~gv~v~~~-~G--~~i~a~lVV~AdG~~  260 (535)
                      .|++|+.+++|++|+.+++++++.+. +|  +++.||.||.|.|++
T Consensus       232 ~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~  277 (347)
T d2ivda1         232 LGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAH  277 (347)
T ss_dssp             HGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             hhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHH
Confidence            47899999999999888777776654 33  469999999999853

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.71  E-value=5.8e-08  Score=83.32  Aligned_cols=94  Identities=17%  Similarity=0.258  Sum_probs=70.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |++|+-+|..|++.|.+|+|+|+.+..-.                 ..++                      
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~-----------------~~~~----------------------   76 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-----------------RVTA----------------------   76 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-----------------TTSC----------------------
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc-----------------cccc----------------------
Confidence            3699999 99999999999999999999998731100                 0000                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCe--E-EEEEcCCeEEEcCeEEEccC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENA--A-VLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~g--v-~v~~~~G~~i~a~lVV~AdG  258 (535)
                                     ..+.+.+.+..++.|++++.+++|+.++...+.  + .+.+++|+++.||+||.|.|
T Consensus        77 ---------------~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          77 ---------------PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             ---------------HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ---------------hhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence                           011134455566789999999999999876433  3 36678899999999999988

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=8.1e-08  Score=82.80  Aligned_cols=93  Identities=22%  Similarity=0.240  Sum_probs=74.2

Q ss_pred             cEEEEc-chHHHHHHHHHHH----CCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccc
Q 009427          112 DVIVCG-GTLGIFIATALSF----KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGF  186 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr----~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~  186 (535)
                      .++||| |++|+-+|..|++    .|.+|+++|+....-.                 ..++                   
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~-----------------~~~~-------------------   82 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-----------------KILP-------------------   82 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-----------------TTSC-------------------
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc-----------------ccCC-------------------
Confidence            599999 9999999999874    5999999998621000                 0000                   


Q ss_pred             cccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          187 EGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       187 ~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                                        ..+.+.+.+.+.+.|++++.++.|++++.+++++.+++++|+++.||.||.|+|
T Consensus        83 ------------------~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          83 ------------------EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             ------------------HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             ------------------HHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence                              112245667778889999999999999988888999999999999999999998

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.69  E-value=2.2e-08  Score=92.78  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=32.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      ++||||||| ||+|+++|+.+++.|.+|+|||+...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   37 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            379999999 99999999999999999999998743

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.65  E-value=1.5e-07  Score=93.53  Aligned_cols=36  Identities=28%  Similarity=0.512  Sum_probs=32.4

Q ss_pred             cccEEEEc-chHHHHHHHHHHH----CCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSF----KGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr----~G~~V~liEr~~~~~  145 (535)
                      ++|||||| |++|+++|+.||+    +|.+|+||||....+
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            58999999 9999999999986    699999999986654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.64  E-value=2.6e-08  Score=92.35  Aligned_cols=35  Identities=37%  Similarity=0.501  Sum_probs=32.6

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      ++||||||| ||+|+++|+.|+|.|++|+|||+...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~   37 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            379999999 99999999999999999999998753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.63  E-value=1.1e-07  Score=80.09  Aligned_cols=90  Identities=20%  Similarity=0.364  Sum_probs=68.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.++||| |++|+-+|..|+++|.+|+|+|+.+..                     +.         +.+.         
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~---------------------l~---------~~~~---------   71 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL---------------------MS---------RAAP---------   71 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST---------------------TT---------TTSC---------
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccc---------------------cc---------ccCC---------
Confidence            3699999 999999999999999999999987310                     00         0000         


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                                     ..+.+.+.+.++++|++++.+++|+++.  ++.  +.++||+++.||+||.|.|
T Consensus        72 ---------------~~~~~~~~~~l~~~GV~i~~~~~v~~~~--~~~--v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          72 ---------------ATLADFVARYHAAQGVDLRFERSVTGSV--DGV--VLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             ---------------HHHHHHHHHHHHTTTCEEEESCCEEEEE--TTE--EEETTSCEEECSEEEECSC
T ss_pred             ---------------HHHHHHHHHHHHHCCcEEEeCCEEEEEe--CCE--EEECCCCEEECCEEEEeeC
Confidence                           1122455666778899999999998863  343  5567899999999999998

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.63  E-value=2e-07  Score=90.51  Aligned_cols=43  Identities=9%  Similarity=0.098  Sum_probs=36.1

Q ss_pred             HhCCCEEEeCceEEEEEEeCCeEEEEEc----CCeEEEcCeEEEccC
Q 009427          216 ISLGGVIFEGYSVSSICTYENAAVLLLA----EGKILSSHLIIDAMG  258 (535)
Q Consensus       216 ~~~G~~i~~~~~V~~i~~~~~gv~v~~~----~G~~i~a~lVV~AdG  258 (535)
                      ++.|++++.+++|++|..+++++++.+.    ++++++||.||.|.+
T Consensus       246 ~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p  292 (370)
T d2iida1         246 RDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT  292 (370)
T ss_dssp             HHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSC
T ss_pred             HhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCC
Confidence            4568999999999999998888877653    246899999999986

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=1.2e-07  Score=86.01  Aligned_cols=109  Identities=13%  Similarity=0.117  Sum_probs=75.1

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      +.||+||| ||+|+.+|+.|+|.|++|+|||+....+..  ..           ...     +     ..+.    .+  
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~--~~-----------~~~-----i-----~~~~----~~--   55 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL--TT-----------TTE-----V-----ENWP----GD--   55 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGG--GG-----------CSB-----C-----CCST----TC--
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccc--cc-----------cch-----h-----hhhh----cc--
Confidence            58999999 999999999999999999999987432210  00           000     0     0000    00  


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                .-.+....+.+.+.+.+.+.++.+..+ .|+.+...++..+++. ....+.++.+|+|+|.
T Consensus        56 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~-~~~~~~~~~viva~G~  114 (190)
T d1trba1          56 ----------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNG-DNGEYTCDALIIATGA  114 (190)
T ss_dssp             ----------CSSCBHHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEE-SSCEEEEEEEEECCCE
T ss_pred             ----------ccccchHHHHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEE-eeeeEeeeeeeeecce
Confidence                      001234566677777888888888755 6888877666666766 4457899999999994

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.58  E-value=4.2e-07  Score=75.85  Aligned_cols=90  Identities=22%  Similarity=0.312  Sum_probs=69.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.++||| |+.|+-+|..|++.|.+|+|+|+...--.                 + ++                      
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~-----------------~-~d----------------------   62 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS-----------------G-FE----------------------   62 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----------------T-SC----------------------
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceecc-----------------c-cc----------------------
Confidence            3699999 99999999999999999999998731000                 0 00                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc-CC--eEEEcCeEEE
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA-EG--KILSSHLIID  255 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~-~G--~~i~a~lVV~  255 (535)
                                     ..+.+.+.+.+++.|++++.+++|++++.+++++.+.+. +|  +++.||.||+
T Consensus        63 ---------------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlv  116 (117)
T d1ebda2          63 ---------------KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV  116 (117)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEE
T ss_pred             ---------------chhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEE
Confidence                           012245666677889999999999999988888877663 44  5699999986

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=3e-07  Score=85.86  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=33.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      +||||||| ||+|+++|+.+|+.|++|+|||+.+.++
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~   39 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP   39 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            69999999 9999999999999999999999886544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.57  E-value=1.4e-07  Score=85.88  Aligned_cols=114  Identities=20%  Similarity=0.209  Sum_probs=76.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .+||+||| ||+|+++|+.|+|.|++|+|+|+.........              +.        ............+  
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~--------------~~--------~~~~~~~~~~~~~--   60 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPG--------------GQ--------LTTTTDVENFPGF--   60 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTT--------------CG--------GGGCSEECCSTTC--
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccc--------------cc--------cccchhhhccccc--
Confidence            58999999 99999999999999999999998743221100              00        0000000000000  


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                ........+...+.+.+.+.|+++..+ .|++++..++...+.+ +..++.++.++.|.|.
T Consensus        61 ----------~~~~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~-~~~~~~~~~~~~a~g~  119 (192)
T d1vdca1          61 ----------PEGILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLFT-DSKAILADAVILAIGA  119 (192)
T ss_dssp             ----------TTCEEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEEC-SSEEEEEEEEEECCCE
T ss_pred             ----------cccccchHHHHHHHHHHHhhcceeeee-eEEecccccCcEEecc-cceeeeeeeEEEEeee
Confidence                      011335677788888888899998755 6888876666666665 4567899999999995

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=9.5e-08  Score=88.32  Aligned_cols=36  Identities=31%  Similarity=0.518  Sum_probs=33.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      +||||||| ||+|+++|..+++.|.+|+|||++.+++
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~GG   38 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGG   38 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCTTH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCcCC
Confidence            69999999 9999999999999999999999986654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.54  E-value=6.1e-08  Score=92.62  Aligned_cols=35  Identities=37%  Similarity=0.605  Sum_probs=33.0

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      ||||||| ||+|+.+|..+|+.|.+|+|||++.+++
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~GG   37 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGG   37 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            8999999 9999999999999999999999987654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=1.4e-07  Score=84.93  Aligned_cols=93  Identities=16%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      ..+|+||| ||+|+++|+.|+++|++|+|+|+.+..++.            +           .  ... ..|..     
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~------------l-----------~--~~~-~~p~~-----   91 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ------------F-----------N--IAK-QIPGK-----   91 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTT------------H-----------H--HHT-TSTTC-----
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCce------------E-----------E--EEE-eCccc-----
Confidence            47899999 999999999999999999999998544320            0           0  000 00110     


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNF  260 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~  260 (535)
                                   -+...+.+.+.+.+++.|++++.++.|+.             +. ....|.||.|+|..
T Consensus        92 -------------~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~-------------~~-~~~~d~vilAtG~~  136 (179)
T d1ps9a3          92 -------------EEFYETLRYYRRMIEVTGVTLKLNHTVTA-------------DQ-LQAFDETILASGIP  136 (179)
T ss_dssp             -------------TTHHHHHHHHHHHHHHHTCEEEESCCCCS-------------SS-SCCSSEEEECCCEE
T ss_pred             -------------chHHHHHHHHHHhhhcCCeEEEeCCEEcc-------------cc-cccceeEEEeecCC
Confidence                         01234556777777788999999987642             11 24578999999964

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.51  E-value=3.1e-07  Score=84.66  Aligned_cols=36  Identities=33%  Similarity=0.491  Sum_probs=33.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      +||||||| ||+|+++|..++|.|.+|+|||+..+++
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG   39 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGG   39 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence            69999999 9999999999999999999999987654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.50  E-value=5e-07  Score=75.39  Aligned_cols=93  Identities=15%  Similarity=0.239  Sum_probs=71.0

Q ss_pred             cEEEEc-chHHHHHHHHHHH---CCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          112 DVIVCG-GTLGIFIATALSF---KGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr---~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .++||| |++|+-+|..+++   .|.+|.++|+.+..-.                 ++ +                    
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~-----------------~~-d--------------------   61 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-----------------GF-D--------------------   61 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-----------------TS-C--------------------
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceecccccccc-----------------cc-c--------------------
Confidence            699999 9999999987665   4899999998721100                 00 0                    


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeE-EEEEcCCeEEEcCeEEEccCC
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAA-VLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv-~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                       ..+.+.+.+.+++.|++++.++.|++++.+++++ .+.+++|+++.||+||.|+|.
T Consensus        62 -----------------~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          62 -----------------SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             -----------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             -----------------chhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence                             1122556667788899999999999998776654 577889999999999999993

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.48  E-value=4.9e-07  Score=75.26  Aligned_cols=90  Identities=23%  Similarity=0.326  Sum_probs=66.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .++||| |++|+-+|..|++.|.+|+|+|+.+..                     +.          .+           
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i---------------------l~----------~~-----------   60 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI---------------------LP----------TY-----------   60 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS---------------------ST----------TS-----------
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeeccc---------------------cc----------cc-----------
Confidence            699999 999999999999999999999987210                     00          00           


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC--eEEEcCeEEEccC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG--KILSSHLIIDAMG  258 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G--~~i~a~lVV~AdG  258 (535)
                                  | ..+.+.+.+...+.|++++.+++|+++.  ++...+...++  .++.||.||.|+|
T Consensus        61 ------------d-~~~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          61 ------------D-SELTAPVAESLKKLGIALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ------------C-HHHHHHHHHHHHHHTCEEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             ------------c-chhHHHHHHHHHhhcceEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence                        0 0122445666677799999999999973  44444443333  5799999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.48  E-value=7.8e-07  Score=74.30  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=69.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |+.|+-+|..|++.|.+|+|+|+....-+                 + ++                       
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-----------------~-~d-----------------------   62 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-----------------K-FD-----------------------   62 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-----------------T-SC-----------------------
T ss_pred             EEEEECCchHHHHHHHHHHhccccceeeehhccccc-----------------c-cc-----------------------
Confidence            599999 99999999999999999999998721000                 0 00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCeEEE-cCeEEEc
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILS-SHLIIDA  256 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G~~i~-a~lVV~A  256 (535)
                                    ..+.+.+.+.+.+.|++++.+++|++++..++ .+.+++++|+++. +|.||.|
T Consensus        63 --------------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          63 --------------ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             --------------HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             --------------HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence                          12225566677788999999999999986655 4778888998775 6999987

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.47  E-value=2.9e-07  Score=85.29  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=33.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      +||+|||| ||+|+.+|..+++.|.+|+|||++.+++
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG   41 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGG   41 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            69999999 9999999999999999999999987654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.45  E-value=5.9e-07  Score=75.73  Aligned_cols=90  Identities=18%  Similarity=0.223  Sum_probs=66.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |++|+-+|..|++.|.+|+|+|+....-.                 ..++                       
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~-----------------~~~d-----------------------   71 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG-----------------VYLD-----------------------   71 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-----------------TTCC-----------------------
T ss_pred             EEEEECChHHHHHHHHHhhccceEEEEEEecCcccc-----------------cccc-----------------------
Confidence            699999 99999999999999999999998721000                 0001                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEc
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDA  256 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~A  256 (535)
                                    ..+.+.+.+.+++.|++++.++++++++.+ +.+.....+|+++.||+||.|
T Consensus        72 --------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          72 --------------KEFTDVLTEEMEANNITIATGETVERYEGD-GRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             --------------HHHHHHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEESSCEEECSEEEEC
T ss_pred             --------------hhhHHHHHHHhhcCCeEEEeCceEEEEEcC-CCEEEEEeCCCEEECCEEEEE
Confidence                          112244556667789999999999998643 344434568889999999987

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.7e-06  Score=72.96  Aligned_cols=92  Identities=15%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |+.|+-+|..|++.|.+|+|+|+....-.                 + ++                       
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~-----------------~-~d-----------------------   62 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-----------------S-FD-----------------------   62 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-----------------T-SC-----------------------
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc-----------------c-hh-----------------------
Confidence            699999 99999999999999999999999721000                 0 00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE---cCC------eEEEcCeEEEccC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL---AEG------KILSSHLIIDAMG  258 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~---~~G------~~i~a~lVV~AdG  258 (535)
                                    ..+.+.+.+.+++.|++++.++++++++.+++++.++.   .+|      ..+.+|+||.|+|
T Consensus        63 --------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          63 --------------SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             --------------HHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             --------------hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence                          11224566667788999999999999998888876654   223      2478999999988

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.41  E-value=7.4e-07  Score=75.36  Aligned_cols=93  Identities=16%  Similarity=0.146  Sum_probs=72.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .++||| |+.|+-+|..+++.|.+|+++|+.+---                  ..++                       
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il------------------~~~d-----------------------   66 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM------------------QGAD-----------------------   66 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS------------------TTSC-----------------------
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc------------------ccch-----------------------
Confidence            699999 9999999999999999999999872100                  0000                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcC--C--eEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAE--G--KILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~--G--~~i~a~lVV~AdG~  259 (535)
                                    ..+.+.+.+.+.+.|++++.++++++++.+++++.+.+.+  |  +++.||.|+.|.|.
T Consensus        67 --------------~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          67 --------------RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             --------------HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             --------------hhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence                          1122556667778899999999999999999988777643  3  46999999999993

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.39  E-value=2e-06  Score=71.92  Aligned_cols=93  Identities=17%  Similarity=0.156  Sum_probs=68.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -.|+||| |+.|+-.|..|++.|.+|.++|+.+....                 ++ +                      
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-----------------~~-d----------------------   62 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-----------------IK-D----------------------   62 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-----------------CC-S----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-----------------cc-c----------------------
Confidence            3699999 99999999999999999999998731100                 10 0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-----cCCeEEEcCeEEEccC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-----AEGKILSSHLIIDAMG  258 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-----~~G~~i~a~lVV~AdG  258 (535)
                                     ..+.+.+.+.+++.|++++.++++++++.++++....+     .+++++.||+||.|.|
T Consensus        63 ---------------~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          63 ---------------NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ---------------cchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence                           01124455666778999999999999988776533221     2346799999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=2.1e-06  Score=72.14  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=67.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .++||| |+.|+-+|..|++.|.+|+|+|+.+..-.                 . ++                       
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~-----------------~-~d-----------------------   63 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-----------------S-MD-----------------------   63 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-----------------S-SC-----------------------
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEeccccch-----------------h-hh-----------------------
Confidence            699999 99999999999999999999998731000                 0 00                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEE--EEcCC-----eEEEcCeEEEc
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVL--LLAEG-----KILSSHLIIDA  256 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v--~~~~G-----~~i~a~lVV~A  256 (535)
                                    ..+.+.+.+.+++.|++++.+++|++++.++++..+  +..++     +++.||.|+.|
T Consensus        64 --------------~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          64 --------------GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             --------------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             --------------hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence                          112245666677889999999999999888776443  33332     47999999987

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.37  E-value=1.4e-06  Score=73.13  Aligned_cols=87  Identities=22%  Similarity=0.361  Sum_probs=66.0

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      +++||| |++|+-+|..|++.|.+|+|+|+.+.-.                  ++ +                       
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~------------------~~-d-----------------------   71 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL------------------GL-D-----------------------   71 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT------------------TC-C-----------------------
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEecccccc------------------CC-C-----------------------
Confidence            699999 9999999999999999999999873110                  10 1                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                                    ..+.+.+.+.+.+.|++++.+++++++  +++++   +.+++++.+|+||.|+|.
T Consensus        72 --------------~~~~~~~~~~l~~~GV~~~~~~~v~~~--~~~~v---~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          72 --------------EELSNMIKDMLEETGVKFFLNSELLEA--NEEGV---LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             --------------HHHHHHHHHHHHHTTEEEECSCCEEEE--CSSEE---EETTEEEECSCEEEECCE
T ss_pred             --------------HHHHHHHHHHHHHCCcEEEeCCEEEEE--eCCEE---EeCCCEEECCEEEEEEEe
Confidence                          011134555667789999999999987  34443   337788999999999993

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=1.5e-06  Score=77.57  Aligned_cols=108  Identities=21%  Similarity=0.235  Sum_probs=69.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      |||+||| ||+|+.+|+.++|.|++|+|||++. ++.  ..+            ..           ...+  ..     
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~~-gg~--~~~------------~~-----------~~~~--~~-----   48 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF-GGQ--ILD------------TV-----------DIEN--YI-----   48 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSST-TGG--GGG------------CC-----------EECC--BT-----
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEec-CCc--ccc------------cc-----------ccee--cc-----
Confidence            9999999 9999999999999999999999862 111  000            00           0000  00     


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC---eEEEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN---AAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~---gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      .        ...++...+...+...+.+.+.+......+..+.....   .......++.++.++.++.+.|.
T Consensus        49 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  113 (184)
T d1fl2a1          49 S--------VPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA  113 (184)
T ss_dssp             T--------BSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCE
T ss_pred             c--------cchhhhHHHHHHHHHHhhheeceeeccceeeeecccccccceeeeeeecceeeecccccccccc
Confidence            0        00122344556666777777888887777777654322   23333445667899999999884

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.32  E-value=3.6e-06  Score=69.99  Aligned_cols=90  Identities=19%  Similarity=0.249  Sum_probs=68.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHC---CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          112 DVIVCG-GTLGIFIATALSFK---GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~---G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      .++||| |+.|+-+|..+++.   |.+|+|+|+....                     +.          .++       
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i---------------------L~----------~~d-------   63 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI---------------------LR----------GFD-------   63 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS---------------------ST----------TSC-------
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh---------------------hc----------ccc-------
Confidence            699999 99999999877655   4579999986210                     00          000       


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC-eEEEEEcCCeEEEcCeEEEc
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN-AAVLLLAEGKILSSHLIIDA  256 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~-gv~v~~~~G~~i~a~lVV~A  256 (535)
                                       ..+.+.+.+.+++.|++++.++++++++..++ .+.+++++|+++.||.||.|
T Consensus        64 -----------------~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          64 -----------------HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             -----------------HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred             -----------------hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence                             11225566777888999999999999987655 47788889999999999987

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.31  E-value=1.6e-07  Score=87.74  Aligned_cols=35  Identities=46%  Similarity=0.583  Sum_probs=32.7

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      .+||||||| ||+|+++|+.|++.|++|+|||+...
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            479999999 99999999999999999999998753

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.28  E-value=2.2e-06  Score=72.13  Aligned_cols=91  Identities=16%  Similarity=0.218  Sum_probs=69.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .++||| |..|+-+|..+++.|.+|+|+|+.+..-.                 ++ +                       
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~-----------------~~-d-----------------------   65 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-----------------TM-D-----------------------   65 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-----------------TS-C-----------------------
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc-----------------hh-h-----------------------
Confidence            699999 99999999999999999999998731100                 00 0                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---CC--eEEEcCeEEEcc
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---EG--KILSSHLIIDAM  257 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---~G--~~i~a~lVV~Ad  257 (535)
                                    ..+.+.+.+.+++.|++++.++++++++.+++++++++.   +|  +++.||.|+.|.
T Consensus        66 --------------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          66 --------------AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             --------------HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             --------------hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence                          112245667778889999999999999887788766552   33  468999999873

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.27  E-value=1.2e-05  Score=80.81  Aligned_cols=33  Identities=30%  Similarity=0.511  Sum_probs=30.8

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~  142 (535)
                      +||+|||| |++|+.+|..|++.+ ++|+|||++.
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            69999999 999999999999986 8999999983

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=1.6e-07  Score=87.32  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=32.5

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +++|||+||| ||+|+++|+.|++.|++|+|||+..
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            4579999999 9999999999999999999999864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.5e-07  Score=83.70  Aligned_cols=36  Identities=36%  Similarity=0.553  Sum_probs=33.6

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      +||||||| ||+|+++|..+++.|.+|+|||+...++
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG   39 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGG   39 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCC
Confidence            59999999 9999999999999999999999986654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.17  E-value=4.6e-07  Score=89.99  Aligned_cols=35  Identities=29%  Similarity=0.465  Sum_probs=32.6

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      +.+||||||| |++|+++|..|++.|+||+|||++.
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~   37 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   37 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence            3479999999 9999999999999999999999973

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.17  E-value=6.7e-07  Score=82.88  Aligned_cols=41  Identities=7%  Similarity=0.053  Sum_probs=36.2

Q ss_pred             CCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccC
Q 009427          218 LGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMG  258 (535)
Q Consensus       218 ~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG  258 (535)
                      .+..+..++.+..+...++.+.|++.+|+.+.+|.++.+..
T Consensus       223 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~  263 (347)
T d1b5qa1         223 VDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSAS  263 (347)
T ss_dssp             CCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSC
T ss_pred             cccccccccccccccccCccEEEEECCCCEEEcCEEEeecC
Confidence            35678899999999988889999999999999999999876

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.16  E-value=7.6e-06  Score=77.60  Aligned_cols=38  Identities=34%  Similarity=0.448  Sum_probs=34.0

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      +.+||||||| |++|+.+|+.+++.|.+|+|||+....+
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG   78 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG   78 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence            4479999999 9999999999999999999999975433

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=1.5e-05  Score=66.72  Aligned_cols=91  Identities=16%  Similarity=0.165  Sum_probs=66.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .++||| |+.|+-+|..|++.|.+|+|++++.+-+                  + ++                       
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~------------------~-~D-----------------------   59 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR------------------G-FD-----------------------   59 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST------------------T-SC-----------------------
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc------------------c-CC-----------------------
Confidence            699999 9999999999999999999998752111                  0 01                       


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCC----eEEEEEcC---C--eEEEcCeEEEccC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYEN----AAVLLLAE---G--KILSSHLIIDAMG  258 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~----gv~v~~~~---G--~~i~a~lVV~AdG  258 (535)
                                    ..+.+.+.+..++.|++++.++.|++++..++    .+.++..+   +  ..+.+|.|+.|.|
T Consensus        60 --------------~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          60 --------------QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             --------------HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             --------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence                          11224566677788999999999999976443    24444432   2  2467899999987

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.3e-07  Score=84.10  Aligned_cols=126  Identities=18%  Similarity=0.232  Sum_probs=71.3

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCC--cEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhc---CCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGL--RVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKF---NPN  182 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~---~~~  182 (535)
                      .++++|||| |++|+.+|..|.++|.  +|++|++.+.....+. .++..    +   .  ............+   ...
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~-~Ls~~----~---~--~~~~~~~~~~~~~~~~~~~   72 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP-PLSKE----L---W--FSDDPNVTKTLRFKQWNGK   72 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSG-GGGTG----G---G--CC--CTHHHHCEEECTTSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCcccc-cccee----c---c--cccCchhhhhhhhhhcccc
Confidence            479999999 9999999999998876  5999988743322211 01100    0   0  0000000000011   100


Q ss_pred             ccc-ccccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          183 RCG-FEGKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       183 ~~~-~~~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      ... +....+.+.        .     ......+.+.|++++.+++|++|+.++  .+|++++|+++.+|.||.|+|.
T Consensus        73 ~~~~~~~~~~~~~--------~-----~~~~~~~~~~gI~~~~g~~V~~id~~~--~~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          73 ERSIYFQPPSFYV--------S-----AQDLPHIENGGVAVLTGKKVVQLDVRD--NMVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             EEESBSSCGGGSB--------C-----TTTTTTSTTCEEEEEETCCEEEEEGGG--TEEEETTSCEEEEEEEEECCCE
T ss_pred             hhhhhcCChhhhh--------h-----hhhHHHHHHCCeEEEeCCEEEEeeccC--ceeeeccceeeccceEEEeeee
Confidence            000 000000000        0     001123456789999999999995433  3567789999999999999994

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7.9e-07  Score=85.66  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=31.8

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .+.+||||| |++||+||+.|+++|++|+|+|++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            357899999 9999999999999999999999975

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.12  E-value=4.4e-07  Score=84.47  Aligned_cols=52  Identities=21%  Similarity=0.241  Sum_probs=38.8

Q ss_pred             ccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCCChH
Q 009427          199 NLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGNFSP  262 (535)
Q Consensus       199 ~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~~S~  262 (535)
                      ...+|+..++..|.+++.+.|+++... +|++++           +.....+|.||.|+|.++.
T Consensus       136 ~~~id~~~~~~~L~~~~~~~G~~~~~~-~v~~l~-----------~~~~~~~d~vVnctG~~a~  187 (246)
T d1kifa1         136 SLILEGRKYLQWLTERLTERGVKFFLR-KVESFE-----------EVARGGADVIINCTGVWAG  187 (246)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEEC-CCCCHH-----------HHHHTTCSEEEECCGGGHH
T ss_pred             ceEEcHHHHHHHHHHHHHHCCCEEEEe-EeCCHH-----------HhccCCCCEEEECCccccc
Confidence            345899999999999999999988754 454431           1122458999999998874

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.4e-06  Score=84.81  Aligned_cols=36  Identities=28%  Similarity=0.506  Sum_probs=32.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      .||||||| |++|+++|..|+++|++|+|+|++...|
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence            38999999 9999999999999999999999985433

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.96  E-value=2.3e-06  Score=81.11  Aligned_cols=31  Identities=35%  Similarity=0.524  Sum_probs=29.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|+||| |++|++||+.|+++|++|+|+|+..
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            499999 9999999999999999999999975

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.95  E-value=9.5e-06  Score=75.57  Aligned_cols=35  Identities=17%  Similarity=0.349  Sum_probs=30.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCC---CcEEEEcccCCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKG---LRVAIVERNTLKG  145 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G---~~V~liEr~~~~~  145 (535)
                      .+|+||| ||+|+++|+.+++.|   .+|+|+|+..+++
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG   40 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGG   40 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCc
Confidence            5799999 999999999988765   5799999987654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.91  E-value=3e-06  Score=84.43  Aligned_cols=33  Identities=30%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      +++|||||| |++|+.+|..|+++|++|+|||++
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            379999999 999999999999999999999986

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.87  E-value=9.6e-06  Score=74.98  Aligned_cols=37  Identities=30%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLKG  145 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~~  145 (535)
                      ..||||||| ||+|+++|..+|+.|. +|+|+|+....+
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~   40 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHG   40 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSB
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccC
Confidence            369999999 9999999999999986 589999875443

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.86  E-value=4.7e-06  Score=77.82  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=32.0

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK  144 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~  144 (535)
                      .+||||||| ||+|+++|+.+|+.|. +|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            379999999 9999999999999986 59999988643

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.79  E-value=6.6e-06  Score=81.99  Aligned_cols=32  Identities=41%  Similarity=0.646  Sum_probs=31.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .||+|||| |++|+.+|..|++.|.+|+|||++
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            59999999 999999999999999999999998

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.74  E-value=7.9e-06  Score=81.11  Aligned_cols=32  Identities=22%  Similarity=0.250  Sum_probs=30.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|||||| |++|+.+|..|+++|++|+|||++
T Consensus         2 ~v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           2 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            36999999 999999999999999999999996

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.69  E-value=1.5e-05  Score=71.33  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=30.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCc-EEEEcccCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLR-VAIVERNTL  143 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~~  143 (535)
                      -.|+||| ||+|+++|..|+++|++ |+|+||...
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            4699999 99999999999999995 999999854

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.68  E-value=1.3e-05  Score=80.77  Aligned_cols=34  Identities=29%  Similarity=0.593  Sum_probs=31.6

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCC-CcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKG-LRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G-~~V~liEr~~  142 (535)
                      ++||+|||| |++|+.+|..|++.| ++|+|||++.
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            369999999 999999999999998 7999999984

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=1.2e-05  Score=78.22  Aligned_cols=41  Identities=10%  Similarity=0.091  Sum_probs=33.8

Q ss_pred             CCCeeEeecCCCccccccccc--chHHHHHHHHHHHHHHHHHh
Q 009427          338 FNRILQFGDASGIQSPVSFGG--FGSLTRHLGRLSTGVYEAVR  378 (535)
Q Consensus       338 ~~rvlliGDAA~~~~P~~G~G--i~~al~da~~La~~l~~al~  378 (535)
                      .++++++|||+..+++....|  ++.++.++.++|+.|.+.|.
T Consensus       268 ~pgl~~~Gdaa~~v~g~~r~G~t~g~m~~sG~~aA~~i~~~l~  310 (311)
T d2gjca1         268 VDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA  310 (311)
T ss_dssp             STTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeeecCcccCcCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence            589999999998888776655  55678899999999988774

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=1.1e-05  Score=74.61  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=31.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCC-------CcEEEEcccCCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKG-------LRVAIVERNTLKG  145 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G-------~~V~liEr~~~~~  145 (535)
                      +.|+||| ||+||+||+.|+++|       ++|+|+|+.+..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence            7899999 999999999999998       5799999986544

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.61  E-value=0.00018  Score=64.70  Aligned_cols=106  Identities=15%  Similarity=0.139  Sum_probs=67.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccc
Q 009427          112 DVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEG  188 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~  188 (535)
                      .|+||| |++|+.+|..|++.  +.+|+++||+......      ...+..+              +......       
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~------~~~~~~~--------------l~~~~~~-------   54 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL------SAGMQLY--------------LEGKVKD-------   54 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC------GGGHHHH--------------HTTSSCC-------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccccc------ccCcchh--------------hcccccc-------
Confidence            489999 99999999999997  4579999987432210      0111111              1100000       


Q ss_pred             cCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEE-cCC--eEEEcCeEEEccCC
Q 009427          189 KGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLL-AEG--KILSSHLIIDAMGN  259 (535)
Q Consensus       189 ~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~-~~G--~~i~a~lVV~AdG~  259 (535)
                      ..     .. .         ....+.+.+.|++++.+++|++++.+++.+++.. .+|  .++.+|.+|.|+|.
T Consensus        55 ~~-----~~-~---------~~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~  113 (198)
T d1nhpa1          55 VN-----SV-R---------YMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGA  113 (198)
T ss_dssp             GG-----GS-B---------SCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred             hH-----HH-H---------HhhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecc
Confidence            00     00 0         0112344567999999999999976666776653 344  35889999999995

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.61  E-value=3.2e-05  Score=71.82  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .-+|+||| ||+|+++|..|+++|++|+|+|+..
T Consensus        49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            57999999 9999999999999999999999885

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.55  E-value=2.4e-05  Score=76.33  Aligned_cols=35  Identities=29%  Similarity=0.501  Sum_probs=31.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKG  145 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~  145 (535)
                      -.|+||| |++||++|+.|+++|++|+|+|+....|
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            4699999 9999999999999999999999986433

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.53  E-value=0.00021  Score=62.03  Aligned_cols=101  Identities=19%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCcccccccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGKG  190 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~  190 (535)
                      .|+||| |++|+.+|..|++ +.+|+|+|+.+.......      .+              ...+. ...+.       .
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~------~~--------------~~~~~-~~~~~-------~   52 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKP------ML--------------SHYIA-GFIPR-------N   52 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCST------TH--------------HHHHT-TSSCG-------G
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccccc------ch--------------hhhhh-hhhhh-------h
Confidence            489999 9999999999975 779999998754322110      00              11110 00000       0


Q ss_pred             cceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          191 EIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       191 ~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                      ...     ..          ..+...+.+++++.++.|+.+.  .+..++. .+++++.+|.+|.|+|.
T Consensus        53 ~~~-----~~----------~~~~~~~~~v~~~~~~~v~~i~--~~~~~~~-~~~~~i~~D~li~a~G~  103 (167)
T d1xhca1          53 RLF-----PY----------SLDWYRKRGIEIRLAEEAKLID--RGRKVVI-TEKGEVPYDTLVLATGA  103 (167)
T ss_dssp             GGC-----SS----------CHHHHHHHTEEEECSCCEEEEE--TTTTEEE-ESSCEEECSEEEECCCE
T ss_pred             hhh-----HH----------HHHHHHhccceeeeeccccccc--ccccccc-ccccccccceeEEEEEe
Confidence            000     00          0112234578999999998873  3333333 46778999999999994

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.49  E-value=0.00012  Score=63.49  Aligned_cols=92  Identities=14%  Similarity=0.044  Sum_probs=62.8

Q ss_pred             ccEEEE--c-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccc
Q 009427          111 FDVIVC--G-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFE  187 (535)
Q Consensus       111 ~DVvIV--G-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~  187 (535)
                      -.|+|+  | |..|+.+|..|+++|.+|+|+|+......            .+                   .+.     
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~------------~~-------------------~~~-----   83 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY------------MH-------------------FTL-----   83 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTH------------HH-------------------HTT-----
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccc------------cc-------------------chh-----
Confidence            356665  8 99999999999999999999998731110            00                   000     


Q ss_pred             ccCcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEc---------------------CCe
Q 009427          188 GKGEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLA---------------------EGK  246 (535)
Q Consensus       188 ~~~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~---------------------~G~  246 (535)
                              .           ...+.+++.+.|++++.++++.++.  ++++.+...                     +..
T Consensus        84 --------~-----------~~~~~~~l~~~GV~i~~~~~v~~i~--~~~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~  142 (156)
T d1djqa2          84 --------E-----------YPNMMRRLHELHVEELGDHFCSRIE--PGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHR  142 (156)
T ss_dssp             --------C-----------HHHHHHHHHHTTCEEEETEEEEEEE--TTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCE
T ss_pred             --------H-----------HHHHHHHHhhccceEEeccEEEEec--CcceEEEeeeccccceeeeeeEEEecccCCccC
Confidence                    0           0335566677899999999999984  555555421                     113


Q ss_pred             EEEcCeEEEccCC
Q 009427          247 ILSSHLIIDAMGN  259 (535)
Q Consensus       247 ~i~a~lVV~AdG~  259 (535)
                      .+.+|-+|.|+|.
T Consensus       143 ~le~D~vilvtgR  155 (156)
T d1djqa2         143 WIEFDSLVLVTGR  155 (156)
T ss_dssp             EEECSEEEEESCE
T ss_pred             cEecceEEEEecC
Confidence            4788888888874

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.49  E-value=0.00018  Score=63.65  Aligned_cols=103  Identities=19%  Similarity=0.186  Sum_probs=62.7

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      ..|+||| |++|+.+|..|++.|.+|.|++........  +.  +..   +      . ..+...    ......     
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~--~~--~~~---l------~-~~~~~~----~~~~~~-----   60 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP--YD--RPP---L------S-KDFMAH----GDAEKI-----   60 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC--BC--SGG---G------G-TTHHHH----CCGGGS-----
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccc--hh--hHH---H------h-hhhhhh----hhhhhH-----
Confidence            4599999 999999999999999887777654211110  00  000   0      0 000000    000000     


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCCeEEEcCeEEEccCC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEGKILSSHLIIDAMGN  259 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G~~i~a~lVV~AdG~  259 (535)
                          ...                 .....+++++.+++++++.  .+...+.+++|+++.+|.||.|+|.
T Consensus        61 ----~~~-----------------~~~~~~i~~~~~~~v~~i~--~~~~~~~~~~g~~~~~D~vi~a~G~  107 (183)
T d1d7ya1          61 ----RLD-----------------CKRAPEVEWLLGVTAQSFD--PQAHTVALSDGRTLPYGTLVLATGA  107 (183)
T ss_dssp             ----BCC-----------------GGGSTTCEEEETCCEEEEE--TTTTEEEETTSCEEECSEEEECCCE
T ss_pred             ----HHH-----------------HhhcCCeEEEEeccccccc--cccceeEecCCcEeeeeeEEEEEEE
Confidence                000                 0113478899999999874  4444566788999999999999994

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.46  E-value=1.9e-05  Score=78.23  Aligned_cols=33  Identities=39%  Similarity=0.709  Sum_probs=30.5

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..||+|||| |++|+.+|..||+. ++|+|||++.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            369999999 99999999999987 9999999984

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.42  E-value=4.8e-05  Score=70.17  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHC--CCcEEEEcccCCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFK--GLRVAIVERNTLKG  145 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~--G~~V~liEr~~~~~  145 (535)
                      ..|+||| ||||++||..|+++  |++|+|+|+.+..+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g   39 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   39 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            3699999 99999999999876  78999999986443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.95  E-value=0.0012  Score=57.84  Aligned_cols=32  Identities=25%  Similarity=0.309  Sum_probs=28.9

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      =|||||| |++|+.+|..|++.|.+|.|++...
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            3799999 9999999999999999988887763

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0062  Score=52.21  Aligned_cols=47  Identities=17%  Similarity=0.311  Sum_probs=37.1

Q ss_pred             HHHHHHHhCCCEEEeCceEEEEEEeCCeEEEEEcCC-eEEEcCeEEEccC
Q 009427          210 IVKKRFISLGGVIFEGYSVSSICTYENAAVLLLAEG-KILSSHLIIDAMG  258 (535)
Q Consensus       210 ~L~~~a~~~G~~i~~~~~V~~i~~~~~gv~v~~~~G-~~i~a~lVV~AdG  258 (535)
                      .....+...|++++.++++..+  +++++.+...+. +++.||.||.|.|
T Consensus       113 ~~~~~~~~~gv~~~~~~~v~~i--~~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         113 IHRTTLLSRGVKMIPGVSYQKI--DDDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEE--ETTEEEEEETTEEEEECCSEEEECCC
T ss_pred             HHHHHHhhCCeEEEeeeEEEEE--cCCCCEEecCCeEEEEECCEEEECCC
Confidence            3556677889999999999987  577887766332 3589999999999

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.12  E-value=0.0027  Score=64.59  Aligned_cols=52  Identities=38%  Similarity=0.517  Sum_probs=41.4

Q ss_pred             CCcccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccc-cccHHHHHHHH
Q 009427          108 VGTFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEW-NISRKELLELV  161 (535)
Q Consensus       108 ~~~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~-~is~~~l~~L~  161 (535)
                      +++|||||+| |..=+.+|.+|++.|.||+-|||+..-|+.  | .++-.++..+.
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~--~aSl~~~~L~~w~   57 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGN--WASFSFSGLLSWL   57 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG--GCEECHHHHHHHH
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCc--ccceeHHHHHHHH
Confidence            4579999999 999999999999999999999999765542  2 24455555553

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.87  E-value=0.0027  Score=54.76  Aligned_cols=31  Identities=35%  Similarity=0.554  Sum_probs=28.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCC--CcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKG--LRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G--~~V~liEr~~  142 (535)
                      .||||| |++|+.+|..|.+.|  .+|+|||+.+
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            699999 999999999999987  4799999874

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.82  E-value=0.069  Score=45.29  Aligned_cols=31  Identities=39%  Similarity=0.339  Sum_probs=27.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCc-EEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLR-VAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~~  142 (535)
                      .||||| |-+|+=+|..+.|.|.+ |.++.|..
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            699999 99999999999999976 88998864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0036  Score=48.79  Aligned_cols=31  Identities=16%  Similarity=0.405  Sum_probs=29.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|+|+| |.+|+++|..|+++|.+|.+.|.+.
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            599999 9999999999999999999999874

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.34  E-value=0.0065  Score=52.97  Aligned_cols=30  Identities=30%  Similarity=0.330  Sum_probs=28.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .+.||| |..|+++|..|+++|++|.+++|+
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            489999 999999999999999999999987

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.27  E-value=0.0053  Score=53.04  Aligned_cols=30  Identities=23%  Similarity=0.370  Sum_probs=28.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -|+||| |-.|..+|..|+++|++|+|+||.
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~   34 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   34 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            589999 999999999999999999999998

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.84  E-value=0.011  Score=48.83  Aligned_cols=31  Identities=29%  Similarity=0.585  Sum_probs=29.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|+|+| |..|..+|..|.+.|++|++||+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            489999 9999999999999999999999973

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.014  Score=49.72  Aligned_cols=31  Identities=35%  Similarity=0.373  Sum_probs=29.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|+||| |..|...|..|++.|++|.+++|..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~   33 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCH
Confidence            489999 9999999999999999999999974

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.016  Score=51.47  Aligned_cols=30  Identities=33%  Similarity=0.489  Sum_probs=28.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..++++|++|.++|++
T Consensus         6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~   36 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   36 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            599999 999999999999999999999987

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.33  E-value=0.015  Score=51.99  Aligned_cols=30  Identities=30%  Similarity=0.421  Sum_probs=28.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|+.+|..||++|++|..+|.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            388999 999999999999999999999986

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.16  E-value=0.018  Score=47.53  Aligned_cols=30  Identities=33%  Similarity=0.381  Sum_probs=28.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .+|||| |-.|..+|..|.+.|++|+++|++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d   32 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   32 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence            479999 999999999999999999999988

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.15  E-value=0.019  Score=50.66  Aligned_cols=30  Identities=30%  Similarity=0.327  Sum_probs=28.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|...|..+++.|++|.++|++
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~   36 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDIN   36 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECC
Confidence            599999 999999999999999999999987

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.42  Score=38.62  Aligned_cols=31  Identities=29%  Similarity=0.268  Sum_probs=29.1

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -+|+||| |-+.+-.|..|++.+-+|.++-|.
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~   59 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRR   59 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeec
Confidence            4899999 999999999999999999999776

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.43  Score=38.57  Aligned_cols=87  Identities=20%  Similarity=0.143  Sum_probs=60.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCCCCCcccccccHHHHHHHHHcCCCChHhHHHHHhhhcCCCccccccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNTLKGREQEWNISRKELLELVESGILVEDDIDEATATKFNPNRCGFEGK  189 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~~~~~~~~~is~~~l~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~~~  189 (535)
                      -+|+||| |-+.+-.|..|++..-+|.||-|.+....                    +                      
T Consensus        31 k~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~--------------------~----------------------   68 (126)
T d1fl2a2          31 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--------------------D----------------------   68 (126)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS--------------------C----------------------
T ss_pred             ceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc--------------------c----------------------
Confidence            4899999 99999999999999999999987621000                    0                      


Q ss_pred             CcceeeeccccccCHHHHHHHHHHHHHhC-CCEEEeCceEEEEEEeCCeEE-EEEc---CC--eEEEcCeEEEccC
Q 009427          190 GEIWVEDILNLGVSPAKLIEIVKKRFISL-GGVIFEGYSVSSICTYENAAV-LLLA---EG--KILSSHLIIDAMG  258 (535)
Q Consensus       190 ~~~~~~~~~~~~v~~~~l~~~L~~~a~~~-G~~i~~~~~V~~i~~~~~gv~-v~~~---~G--~~i~a~lVV~AdG  258 (535)
                                         +.+.+++.+. +++++.+++++++.-+++.++ +.+.   +|  +++.+|-|.++-|
T Consensus        69 -------------------~~~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          69 -------------------QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             -------------------HHHHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             -------------------cccccccccccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence                               1123333443 478899999999865544433 3332   34  4688999988876

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.24  E-value=0.06  Score=45.90  Aligned_cols=30  Identities=30%  Similarity=0.398  Sum_probs=28.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|.+.|..|+++|++|.++||+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            378999 999999999999999999999987

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.21  E-value=0.066  Score=46.02  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ...|+|+| |.+|+.++..+.+.|.+|.++|.+
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            36899999 999999999999999999999987

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.09  E-value=0.075  Score=46.33  Aligned_cols=32  Identities=22%  Similarity=0.263  Sum_probs=30.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      ..|+|+| |.+|+.+|..+.+.|.+|.++|.++
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            6899999 9999999999999999999999873

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.07  E-value=0.076  Score=45.89  Aligned_cols=31  Identities=19%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .+|-||| |..|...|..|.++|++|.+++|.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~   34 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRT   34 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCC
Confidence            5799999 999999999999999999999987

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.87  E-value=0.085  Score=45.23  Aligned_cols=29  Identities=31%  Similarity=0.430  Sum_probs=27.3

Q ss_pred             EEEE-c-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          113 VIVC-G-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       113 VvIV-G-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      |.|| | |-.|.++|..|+++|++|+|..|+
T Consensus         3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~   33 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            7888 7 999999999999999999999887

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=90.68  E-value=0.067  Score=47.06  Aligned_cols=31  Identities=32%  Similarity=0.395  Sum_probs=29.2

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      ..|.|+| |.-|.++|..|++.|++|.|..|+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            5799999 999999999999999999999876

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=90.10  E-value=0.12  Score=43.92  Aligned_cols=30  Identities=30%  Similarity=0.426  Sum_probs=27.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|+|+| |+.|+.++..+...|.+|+++|++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchH
Confidence            589999 999999999888899999999986

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.07  E-value=0.09  Score=46.13  Aligned_cols=29  Identities=31%  Similarity=0.434  Sum_probs=26.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |-.|+.+|..+| +|++|+.+|-+
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din   31 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDIL   31 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSC
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECC
Confidence            388999 999999999887 59999999977

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.05  E-value=0.12  Score=44.00  Aligned_cols=30  Identities=23%  Similarity=0.363  Sum_probs=28.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|-||| |..|...|..|+++|++|.+.||.
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            488999 999999999999999999999987

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.96  E-value=0.11  Score=45.18  Aligned_cols=30  Identities=27%  Similarity=0.336  Sum_probs=27.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|.||| |..|.++|..|++.|++|.|..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            589999 999999999999999999999764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.78  E-value=0.082  Score=46.87  Aligned_cols=32  Identities=41%  Similarity=0.490  Sum_probs=29.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~  142 (535)
                      .||+||| |++||++|+.|+++|+ +|+|+||..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            3899999 9999999999999997 699999975

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=0.16  Score=42.56  Aligned_cols=31  Identities=29%  Similarity=0.500  Sum_probs=29.0

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .+|||| |..|..+|..|.+.|.+|++||.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            599999 9999999999999999999999873

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.74  E-value=0.13  Score=43.66  Aligned_cols=30  Identities=27%  Similarity=0.420  Sum_probs=28.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|-||| |..|...|..|+++|++|.+.||.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            378999 999999999999999999999987

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.46  E-value=0.17  Score=43.55  Aligned_cols=30  Identities=40%  Similarity=0.655  Sum_probs=28.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|-||| |..|...|..|.+.|++|.+.+|.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            588999 999999999999999999999986

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=88.85  E-value=0.18  Score=42.14  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=29.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC--cEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL--RVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~  141 (535)
                      +..|.||| |-.|.++|+.|+.+|+  ++.|+|++
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            56899999 9999999999999884  79999986

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.77  E-value=0.18  Score=43.03  Aligned_cols=30  Identities=27%  Similarity=0.600  Sum_probs=27.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      .|+|+| |+.|+.++..+...|. +|+++|++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            499999 9999999999999998 69999977

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=88.49  E-value=0.19  Score=41.92  Aligned_cols=32  Identities=28%  Similarity=0.601  Sum_probs=29.5

Q ss_pred             ccEEEEc--chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          111 FDVIVCG--GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       111 ~DVvIVG--G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -.|.|||  |..|.+.|..|.++|++|.++|+..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            4699999  9999999999999999999999873

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.19  E-value=0.15  Score=43.48  Aligned_cols=32  Identities=34%  Similarity=0.550  Sum_probs=30.2

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      .|+|+| |..|-.+|..|...|.+|.|.|.+|+
T Consensus        25 ~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          25 IVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             EEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            699999 99999999999999999999999964

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.86  E-value=0.22  Score=42.06  Aligned_cols=30  Identities=30%  Similarity=0.390  Sum_probs=27.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|+|+| |+.|++++..+...|.+|+++++.
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            499999 999999998888889999999876

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=0.25  Score=42.07  Aligned_cols=31  Identities=39%  Similarity=0.406  Sum_probs=29.5

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      .|+||| |..|-..|..|...|.+|++.|.++
T Consensus        26 ~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          26 VAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            599999 9999999999999999999999985

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.77  E-value=0.29  Score=38.73  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=28.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |..|..-|..|.+.|.+|+++...
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4799999 999999999999999999999765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.57  E-value=0.25  Score=41.97  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=26.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -|+|+| |+.|+.++..+...|.+|++++++
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~   60 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRS   60 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccc
Confidence            489999 999999888777789999999987

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=86.31  E-value=0.59  Score=39.54  Aligned_cols=32  Identities=28%  Similarity=0.407  Sum_probs=29.5

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC--cEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL--RVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~  141 (535)
                      ...|.||| |-.|.++|+.|+.+|+  ++.|+|.+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            46899999 9999999999999997  79999986

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=86.02  E-value=0.38  Score=40.44  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=29.4

Q ss_pred             CcccEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          109 GTFDVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       109 ~~~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      .+..|.||| |-.|.++|+.|+..++ +++|+|.+
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~   40 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   40 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEec
Confidence            357899999 9999999999999886 79999976

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.73  E-value=0.24  Score=41.34  Aligned_cols=31  Identities=19%  Similarity=0.388  Sum_probs=28.5

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -.|+||| |..|+.-|..|.+.|.+|+||...
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4699999 999999999999999999999654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.24  E-value=0.54  Score=37.16  Aligned_cols=34  Identities=29%  Similarity=0.363  Sum_probs=31.0

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCCcEEEEcccCC
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGLRVAIVERNTL  143 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~~  143 (535)
                      ...|.|+| |-.|..+|.++.+.|++|.++|.++-
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            46799999 99999999999999999999998753

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=84.95  E-value=0.4  Score=40.80  Aligned_cols=31  Identities=19%  Similarity=0.238  Sum_probs=28.8

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -+|+|+| |-++-+++++|++.|.+|.|+.|.
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            4799999 999999999999999999999876

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=84.53  E-value=0.35  Score=43.79  Aligned_cols=34  Identities=24%  Similarity=0.465  Sum_probs=30.3

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCC-cEEEEcccCCC
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGL-RVAIVERNTLK  144 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~~~~  144 (535)
                      ..|+||| |-.|..+|..|++.|. ++.|+|.+.+.
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve   66 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVS   66 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccc
Confidence            5799999 9999999999999998 68899988543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.27  E-value=0.46  Score=40.11  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=26.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC--cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL--RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~  141 (535)
                      .|.||| |..|.+.|..|.+.|+  +|..+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            489999 9999999999999996  57778876

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.86  E-value=0.51  Score=39.29  Aligned_cols=32  Identities=28%  Similarity=0.483  Sum_probs=28.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC--cEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL--RVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~  141 (535)
                      ...|.||| |-.|.++|+.|+..|+  ++.|+|.+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            46799999 9999999999999886  69999976

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=83.47  E-value=0.44  Score=40.81  Aligned_cols=30  Identities=27%  Similarity=0.488  Sum_probs=26.9

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      .|+|+| |+.|+.++..+...|. +|.++|++
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             EEEEECCCccchhheecccccccccccccccc
Confidence            589999 9999999998888998 69999986

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.31  E-value=0.49  Score=41.00  Aligned_cols=31  Identities=26%  Similarity=0.379  Sum_probs=28.5

Q ss_pred             ccEEEEc--chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG--GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG--G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      --|+|.|  |-.|..+|..|++.|.+|+++.|+
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~   56 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK   56 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccc
Confidence            3588888  999999999999999999999987

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=83.13  E-value=0.51  Score=40.35  Aligned_cols=30  Identities=27%  Similarity=0.511  Sum_probs=26.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      .|+|+| |+.|++++..+...|. +|.++|++
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             EEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            599999 9999999988888897 69999976

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.91  E-value=0.47  Score=39.44  Aligned_cols=30  Identities=23%  Similarity=0.306  Sum_probs=27.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|-||| |-.|..+|..|.++|++|.+.++.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~   32 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEG   32 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCc
Confidence            478999 999999999999999999999876

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=82.74  E-value=0.49  Score=39.09  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=27.1

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      .|.||| |-.|.++|+.|+.+++ +++++|..
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~   34 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeec
Confidence            589999 9999999999999887 79999876

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.74  E-value=0.5  Score=39.59  Aligned_cols=30  Identities=30%  Similarity=0.341  Sum_probs=26.8

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -|+|+| |+.|++++..+...|.+|.+++++
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            488899 999999988888899999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=82.36  E-value=0.58  Score=39.47  Aligned_cols=30  Identities=27%  Similarity=0.255  Sum_probs=26.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      .|+|+| |+.|+.++..+...|.+|+++++.
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~   63 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS   63 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccc
Confidence            599999 999999988888889999999876

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.17  E-value=0.61  Score=39.90  Aligned_cols=29  Identities=24%  Similarity=0.450  Sum_probs=26.8

Q ss_pred             EEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          113 VIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       113 VvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      |+|+| |+.|+.+...+...|. +|+++|.+
T Consensus        33 VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~   63 (176)
T d1d1ta2          33 CVVFGLGGVGLSVIMGCKSAGASRIIGIDLN   63 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             EEEECCCchhHHHHHHHHHcCCceEEEecCc
Confidence            89999 9999999999999995 79999987

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.45  E-value=0.85  Score=38.43  Aligned_cols=32  Identities=31%  Similarity=0.632  Sum_probs=28.7

Q ss_pred             cccEEEEc-chHHHHHHHHHHHCCC--cEEEEccc
Q 009427          110 TFDVIVCG-GTLGIFIATALSFKGL--RVAIVERN  141 (535)
Q Consensus       110 ~~DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~  141 (535)
                      ...|.||| |-.|.++|+.|+..|+  +++|+|.+
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            35799999 9999999999999987  69999976

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=81.43  E-value=0.59  Score=38.86  Aligned_cols=30  Identities=23%  Similarity=0.493  Sum_probs=26.7

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC--cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL--RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~  141 (535)
                      .|.||| |-.|.++|+.|+.+|.  +++|+|.+
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            489999 9999999999999885  68899876

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=81.18  E-value=0.75  Score=38.02  Aligned_cols=30  Identities=23%  Similarity=0.460  Sum_probs=27.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC--cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL--RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~--~V~liEr~  141 (535)
                      .|.||| |-.|.++|+.|+.+|+  +++|+|.+
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            599999 9999999999999987  69999976

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=80.86  E-value=0.73  Score=39.30  Aligned_cols=30  Identities=20%  Similarity=0.382  Sum_probs=26.3

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCc-EEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLR-VAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~-V~liEr~  141 (535)
                      .|+|+| |+.|++++..+...|.+ |++.|..
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~   62 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence            599999 99999999999999985 6677876

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=80.76  E-value=0.47  Score=37.03  Aligned_cols=31  Identities=13%  Similarity=-0.030  Sum_probs=27.4

Q ss_pred             ccEEEEc-chHHHHHHHHHHHCCCcEEEEccc
Q 009427          111 FDVIVCG-GTLGIFIATALSFKGLRVAIVERN  141 (535)
Q Consensus       111 ~DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~  141 (535)
                      -+|+||| |.+|.-+|..|++.+.+|+++-+.
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            5899999 999999999999999888777654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=80.71  E-value=0.59  Score=34.47  Aligned_cols=31  Identities=32%  Similarity=0.343  Sum_probs=28.6

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCCcEEEEcccC
Q 009427          112 DVIVCG-GTLGIFIATALSFKGLRVAIVERNT  142 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~~V~liEr~~  142 (535)
                      -|.|+| |=.|.+++.+..+.|++|.+++.+.
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            388999 9999999999999999999999763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=80.18  E-value=0.73  Score=40.11  Aligned_cols=30  Identities=30%  Similarity=0.453  Sum_probs=25.4

Q ss_pred             cEEEEc-chHHHHHHHHHHHCCC-cEEEEccc
Q 009427          112 DVIVCG-GTLGIFIATALSFKGL-RVAIVERN  141 (535)
Q Consensus       112 DVvIVG-G~aGl~~A~~LAr~G~-~V~liEr~  141 (535)
                      .|+|+| |+.|+.++..+...|. +|+++|..
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            699999 9999999988877777 68888865