Citrus Sinensis ID: 009431

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
MASPAVVPSQPRSSKTESYVDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccEEEEEccccccccccEEEEEEEEcccccccccccccccccEEEEEccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHccccEEEEcccHHHHHHHHHHccEEccccccccccccccccEEEEEEEEccEEEEEEcccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEccc
cccHccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHEEEcccccEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHccccccEEEEEHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccEcHccEEEEEEccccEcccEEEEEEEEEccEEcccccccEEEEEEEEEEcccEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHccEEEEcHHHccHHHcccccEEEEEEccccEEEEEEcccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEEEcccccHcHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
maspavvpsqprssktesyvdnkrkEDIRQANIVAARAVADAVRtslgpkgmdkMISTASGeviitndgatilNKMEVLQPAAKMLVELSksqdaaagdgtTTVVVIAGALLKQCLILLssgihptvisdTLHKAAIHAVDVLTAMAVpvelsdrdslvKSASTSLNSKVVSQYSTLLAplavdsvlsvvdpckpdlvdlrdIRIVKklggtvddteLVKGLvfdkkashaaggptrveNAKIAVIQfqisppktdieqsivvSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTlnclpianidhfraeklghadlveelslgdgkivkitgikdmgrtTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRfliagggapeiELSRQLGAWAKALSGMERYCVRSFAEALEVipytlaenaglnPLAIVTELRNRHaqgeinsginvrkgqitnileenvvqpllvsTSAITLAAECVRMILKiddivtvr
maspavvpsqprssktesyvdnkrkedirqANIVAARAVADAvrtslgpkgmdKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCkpdlvdlrdirivkklggtvddtelVKGLVFdkkashaaggptrveNAKIAVIQfqisppktdieqsivvSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLhylakskimvvkdVERDEIEFITKTLNCLPIANIDHFRAEKLGHADlveelslgdgkivkitgikdmgrtttvlVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHaqgeinsginvrkGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR
MASPAVVPSQPRSSKTESYVDNKRKEDIrqanivaaravadavrTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR
*******************************NIVAARAVADAVRT*********MISTASGEVIITNDGATILNKMEVLQPAAKMLVEL*****AAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELS*************NSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVT**
*******************************NIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR
********************DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR
*********QPRSSKTESYVDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR
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MASPAVVPSQPRSSKTESYVDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query535 2.2.26 [Sep-21-2011]
Q54CL2533 T-complex protein 1 subun yes no 0.994 0.998 0.662 0.0
Q9NB32533 T-complex protein 1 subun N/A no 0.983 0.986 0.658 0.0
P80315539 T-complex protein 1 subun yes no 0.977 0.970 0.653 0.0
Q2T9X2542 T-complex protein 1 subun yes no 0.964 0.952 0.655 0.0
P50991539 T-complex protein 1 subun yes no 0.962 0.955 0.658 0.0
Q5R637539 T-complex protein 1 subun yes no 0.962 0.955 0.656 0.0
Q7TPB1539 T-complex protein 1 subun yes no 0.977 0.970 0.648 0.0
P53451536 T-complex protein 1 subun N/A no 0.971 0.970 0.653 0.0
P50999527 T-complex protein 1 subun yes no 0.968 0.982 0.633 0.0
Q75A36529 T-complex protein 1 subun yes no 0.979 0.990 0.602 1e-179
>sp|Q54CL2|TCPD_DICDI T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1 Back     alignment and function desciption
 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/536 (66%), Positives = 449/536 (83%), Gaps = 4/536 (0%)

Query: 1   MASPAVVPSQPRSSKTESYVDNKRKE-DIRQANIVAARAVADAVRTSLGPKGMDKMISTA 59
           M++PA  P++   S+++   D K KE D+R +NIVAARAVADA+RTSLGPKGMDKMI + 
Sbjct: 1   MSAPAAAPAKVLPSRSD--FDEKEKEKDVRTSNIVAARAVADAIRTSLGPKGMDKMIISP 58

Query: 60  SGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILL 119
           + EV+I+NDGATIL  +E+  PAAKML EL+K+QD  AGDGTT+V VIAG+LL     L+
Sbjct: 59  NNEVLISNDGATILQNLELRHPAAKMLAELAKAQDIEAGDGTTSVCVIAGSLLGAVSQLM 118

Query: 120 SSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLA 179
           + GIHP++IS+  + A   +++VL +M+VPV L+DR SLVKSA+TSLNSKVVSQY+ L A
Sbjct: 119 AKGIHPSIISEAFNLALNKSLEVLVSMSVPVSLTDRVSLVKSATTSLNSKVVSQYTNL-A 177

Query: 180 PLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVE 239
            +AVD+VLSV++P     V+L+DI+++KKLGGT++DTELV+GLVFD+ ASH AGGPTR++
Sbjct: 178 SIAVDAVLSVINPATAVNVNLKDIKLIKKLGGTIEDTELVQGLVFDQTASHTAGGPTRIQ 237

Query: 240 NAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQK 299
           NAKI +IQF +S PKT ++ +IVVSDY++MD+++KEE   IL M +KI+ +GCNVLL+QK
Sbjct: 238 NAKIGLIQFCLSAPKTYMDNNIVVSDYSKMDKVIKEEPKLILEMCRKIQKSGCNVLLVQK 297

Query: 300 SILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLV 359
           SILRDAV DLSLHYLAK KI+V+KD+ERD+IEFI  T+ C P+ANID F A+KLG ADLV
Sbjct: 298 SILRDAVNDLSLHYLAKLKILVIKDIERDDIEFICNTIGCQPVANIDSFTADKLGKADLV 357

Query: 360 EELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIA 419
           EE+   DGKIVK+TGI + G+T TVL RGSN+LVLDEAERSLHDALCV+R LV K+FLIA
Sbjct: 358 EEVGTSDGKIVKVTGIPNPGKTVTVLCRGSNKLVLDEAERSLHDALCVIRSLVKKKFLIA 417

Query: 420 GGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNR 479
           GGGAPEIE+S+Q+ A++K L+G+  YCVR++AEALE+IPYTLAENAGL+P++IVTELRN+
Sbjct: 418 GGGAPEIEVSQQVTAFSKTLTGITSYCVRAYAEALEIIPYTLAENAGLHPISIVTELRNK 477

Query: 480 HAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535
           HAQGEINSGINVRKG ITNIL+ENVVQPLLVSTSA+TLA E V M+LKIDDI T R
Sbjct: 478 HAQGEINSGINVRKGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDDIATAR 533
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Dictyostelium discoideum (taxid: 44689)
>sp|Q9NB32|TCPD_AEDTR T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1 Back     alignment and function description
>sp|P80315|TCPD_MOUSE T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3 Back     alignment and function description
>sp|Q2T9X2|TCPD_BOVIN T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=1 SV=3 Back     alignment and function description
>sp|P50991|TCPD_HUMAN T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4 Back     alignment and function description
>sp|Q5R637|TCPD_PONAB T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3 Back     alignment and function description
>sp|Q7TPB1|TCPD_RAT T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3 Back     alignment and function description
>sp|P53451|TCPD_TAKRU T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1 Back     alignment and function description
>sp|P50999|TCPD_SCHPO T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct4 PE=2 SV=2 Back     alignment and function description
>sp|Q75A36|TCPD_ASHGO T-complex protein 1 subunit delta OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CCT4 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
302399085534 TCP domain class transcription factor [M 0.998 1.0 0.928 0.0
255558769533 chaperonin containing t-complex protein 0.996 1.0 0.934 0.0
224118744531 predicted protein [Populus trichocarpa] 0.985 0.992 0.914 0.0
255957392533 cytosolic chaperonin, delta subunit [Gly 0.992 0.996 0.909 0.0
224135449533 predicted protein [Populus trichocarpa] 0.990 0.994 0.913 0.0
449439437533 PREDICTED: T-complex protein 1 subunit d 0.996 1.0 0.925 0.0
351727074533 cytosolic chaperonin [Glycine max] gi|15 0.992 0.996 0.905 0.0
449503119533 PREDICTED: T-complex protein 1 subunit d 0.996 1.0 0.923 0.0
21595439536 chaperonin subunit, putative [Arabidopsi 0.998 0.996 0.900 0.0
15229595536 TCP-1/cpn60 chaperonin family protein [A 0.998 0.996 0.900 0.0
>gi|302399085|gb|ADL36837.1| TCP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
 Score =  996 bits (2574), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/535 (92%), Positives = 524/535 (97%), Gaps = 1/535 (0%)

Query: 1   MASPAVVPSQPRSSKTESYVDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTAS 60
           MASPAV+ SQPRSSKTESYVDNKRKEDIRQANI AARAVADAVRTSLGPKGMDKMISTA+
Sbjct: 1   MASPAVI-SQPRSSKTESYVDNKRKEDIRQANITAARAVADAVRTSLGPKGMDKMISTAN 59

Query: 61  GEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLS 120
           GEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQC +LLS
Sbjct: 60  GEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCQVLLS 119

Query: 121 SGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAP 180
            GIHPTVISD+LHKA+  AVD+LTAMAVPVEL+DRDSLVKSASTSLNSKVVSQYSTLLAP
Sbjct: 120 HGIHPTVISDSLHKASTKAVDILTAMAVPVELTDRDSLVKSASTSLNSKVVSQYSTLLAP 179

Query: 181 LAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVEN 240
           +AVD+VLSVVDP KP++VDLRDIRIVKKLGGTVDDTE+VKGLVFDKKASHAAGGPTR+EN
Sbjct: 180 MAVDAVLSVVDPAKPEIVDLRDIRIVKKLGGTVDDTEMVKGLVFDKKASHAAGGPTRMEN 239

Query: 241 AKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKS 300
           AKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKS
Sbjct: 240 AKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKS 299

Query: 301 ILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVE 360
           ILRDAVTDLSLHYLAK+KI+V+KDVERDEIEFITKTLNCLPIANI+HFRAEKLG+AD+VE
Sbjct: 300 ILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADMVE 359

Query: 361 ELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAG 420
           E+SLGDGKIVKITGI++MGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAG
Sbjct: 360 EVSLGDGKIVKITGIQNMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAG 419

Query: 421 GGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRH 480
           GGAPEIELSRQLGAWAK L GME YCV+SFAEALEV+PYTLAENAGLNP++IVTELRNRH
Sbjct: 420 GGAPEIELSRQLGAWAKVLQGMEGYCVKSFAEALEVVPYTLAENAGLNPISIVTELRNRH 479

Query: 481 AQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535
           AQGEIN+GINVRKGQITNILEENVVQPLLVSTSAITLA ECVRMILKIDDIVTVR
Sbjct: 480 AQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR 534

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255558769|ref|XP_002520408.1| chaperonin containing t-complex protein 1, delta subunit, tcpd, putative [Ricinus communis] gi|223540393|gb|EEF41963.1| chaperonin containing t-complex protein 1, delta subunit, tcpd, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224118744|ref|XP_002317895.1| predicted protein [Populus trichocarpa] gi|222858568|gb|EEE96115.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255957392|emb|CBA13550.1| cytosolic chaperonin, delta subunit [Glycine max] Back     alignment and taxonomy information
>gi|224135449|ref|XP_002322076.1| predicted protein [Populus trichocarpa] gi|222869072|gb|EEF06203.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449439437|ref|XP_004137492.1| PREDICTED: T-complex protein 1 subunit delta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351727074|ref|NP_001237404.1| cytosolic chaperonin [Glycine max] gi|156713191|dbj|BAF76644.1| group II-chaperonin delta-subunit [Glycine max] gi|156713193|dbj|BAF76645.1| cytosolic chaperonin [Glycine max] Back     alignment and taxonomy information
>gi|449503119|ref|XP_004161843.1| PREDICTED: T-complex protein 1 subunit delta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|21595439|gb|AAM66101.1| chaperonin subunit, putative [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15229595|ref|NP_188447.1| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] gi|9294075|dbj|BAB02032.1| cytosolic chaperonin, delta-subunit [Arabidopsis thaliana] gi|20466822|gb|AAM20728.1| chaperonin subunit, putative [Arabidopsis thaliana] gi|28059669|gb|AAO30081.1| chaperonin subunit, putative [Arabidopsis thaliana] gi|332642540|gb|AEE76061.1| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query535
TAIR|locus:2092697536 AT3G18190 [Arabidopsis thalian 0.998 0.996 0.878 4.4e-242
DICTYBASE|DDB_G0292872533 cct4 "chaperonin containing TC 0.994 0.998 0.639 1.2e-177
UNIPROTKB|F1N0E5542 CCT4 "T-complex protein 1 subu 0.964 0.952 0.635 3.8e-172
UNIPROTKB|F1SQN1539 CCT4 "T-complex protein 1 subu 0.983 0.975 0.630 4.9e-172
MGI|MGI:104689539 Cct4 "chaperonin containing Tc 0.996 0.988 0.625 6.2e-172
UNIPROTKB|Q2T9X2542 CCT4 "T-complex protein 1 subu 0.964 0.952 0.633 8e-172
UNIPROTKB|F1Q331539 CCT4 "T-complex protein 1 subu 0.970 0.962 0.636 8e-172
UNIPROTKB|P50991539 CCT4 "T-complex protein 1 subu 0.964 0.957 0.635 1.7e-171
UNIPROTKB|F1NPG8538 CCT4 "T-complex protein 1 subu 0.964 0.959 0.641 2.1e-171
ZFIN|ZDB-GENE-040426-1421533 cct4 "chaperonin containing TC 0.988 0.992 0.631 2.7e-171
TAIR|locus:2092697 AT3G18190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2333 (826.3 bits), Expect = 4.4e-242, P = 4.4e-242
 Identities = 469/534 (87%), Positives = 497/534 (93%)

Query:     2 ASPAVVPSQPRSSKTESYVDNKRKEDIXXXXXXXXXXXXXXXXTSLGPKGMDKMISTASG 61
             A  A + S+PR SK ES+VDNKR+EDI                TSLGPKGMDKMISTA+G
Sbjct:     3 AVAAPMASKPRGSKAESFVDNKRREDIRFANINSARAVSDAVRTSLGPKGMDKMISTANG 62

Query:    62 EVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSS 121
             EVIITNDGATILNKMEVLQPAAKMLVELSKSQD+AAGDGTTTVVVIAGALLK+C  LL++
Sbjct:    63 EVIITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTN 122

Query:   122 GIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPL 181
             GIHPTVISD+LHKA   A+D+LTAMAVPVEL+DRDSLVKSASTSLNSKVVSQYSTLLAPL
Sbjct:   123 GIHPTVISDSLHKACGKAIDILTAMAVPVELTDRDSLVKSASTSLNSKVVSQYSTLLAPL 182

Query:   182 AVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENA 241
             AVD+VLSV+DP KP++VDLRDI+IVKKLGGTVDDT  VKGLVFDKK S AAGGPTRVENA
Sbjct:   183 AVDAVLSVIDPEKPEIVDLRDIKIVKKLGGTVDDTHTVKGLVFDKKVSRAAGGPTRVENA 242

Query:   242 KIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSI 301
             KIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSI
Sbjct:   243 KIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSI 302

Query:   302 LRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEE 361
             LRDAVTDLSLHYLAK+KIMV+KDVERDEIEF+TKTLNCLPIANI+HFRAEKLGHADLVEE
Sbjct:   303 LRDAVTDLSLHYLAKAKIMVIKDVERDEIEFVTKTLNCLPIANIEHFRAEKLGHADLVEE 362

Query:   362 LSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGG 421
              SLGDGKI+KITGIKDMGRTT+VLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGG
Sbjct:   363 ASLGDGKILKITGIKDMGRTTSVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGG 422

Query:   422 GAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHA 481
             GAPEIELSRQLGAWAK L GME YCV+SFAEALEVIPYTLAENAGLNP+AIVTELRN+HA
Sbjct:   423 GAPEIELSRQLGAWAKVLHGMEGYCVKSFAEALEVIPYTLAENAGLNPIAIVTELRNKHA 482

Query:   482 QGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535
             QGEIN+GINVRKGQITNILEENVVQPLLVSTSAITLA ECVRMILKIDDIVTVR
Sbjct:   483 QGEINAGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR 536
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
DICTYBASE|DDB_G0292872 cct4 "chaperonin containing TCP1 delta subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1N0E5 CCT4 "T-complex protein 1 subunit delta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQN1 CCT4 "T-complex protein 1 subunit delta" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:104689 Cct4 "chaperonin containing Tcp1, subunit 4 (delta)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q2T9X2 CCT4 "T-complex protein 1 subunit delta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q331 CCT4 "T-complex protein 1 subunit delta" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P50991 CCT4 "T-complex protein 1 subunit delta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPG8 CCT4 "T-complex protein 1 subunit delta" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1421 cct4 "chaperonin containing TCP1, subunit 4 (delta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R637TCPD_PONABNo assigned EC number0.65630.96260.9554yesno
O28045THSA_ARCFUNo assigned EC number0.42070.93640.9192yesno
Q9V2T5THSA_SULACNo assigned EC number0.41230.93080.8924yesno
P47208TCPD_CAEELNo assigned EC number0.59350.97570.9666yesno
Q75A36TCPD_ASHGONo assigned EC number0.60220.97940.9905yesno
Q9NB32TCPD_AEDTRNo assigned EC number0.65840.98310.9868N/Ano
P50999TCPD_SCHPONo assigned EC number0.63320.96820.9829yesno
Q6C100TCPD_YARLINo assigned EC number0.56480.96630.9810yesno
P50991TCPD_HUMANNo assigned EC number0.65830.96260.9554yesno
Q54CL2TCPD_DICDINo assigned EC number0.66230.99430.9981yesno
P48424THSA_THEACNo assigned EC number0.40390.92520.9082yesno
O30561THS1_HALVDNo assigned EC number0.38460.92890.8875yesno
Q6CL82TCPD_KLULANo assigned EC number0.57650.98310.9924yesno
O24734THSA_SULTONo assigned EC number0.40540.93080.8908yesno
Q9V2S9THSA_SULSONo assigned EC number0.39700.96440.9230yesno
Q9V2Q7THS_PYRABNo assigned EC number0.40880.95140.9254yesno
Q6BXF6TCPD_DEBHANo assigned EC number0.57720.99250.9962yesno
P80315TCPD_MOUSENo assigned EC number0.65390.97750.9703yesno
O26885THSB_METTHNo assigned EC number0.40900.92140.9163yesno
O57762THS_PYRHONo assigned EC number0.41310.94570.9216yesno
Q52500THSB_PYRKONo assigned EC number0.41310.94570.9267yesno
P53451TCPD_TAKRUNo assigned EC number0.65390.97190.9701N/Ano
Q7TPB1TCPD_RATNo assigned EC number0.64820.97750.9703yesno
Q6FQT2TCPD_CANGANo assigned EC number0.58550.97750.9886yesno
Q9YA66THSB_AERPENo assigned EC number0.41910.91210.8905yesno
Q2T9X2TCPD_BOVINNo assigned EC number0.65510.96440.9520yesno
P50016THS_METKANo assigned EC number0.42150.93830.9211yesno
Q58405THS_METJANo assigned EC number0.40350.92890.9169yesno
P39078TCPD_YEASTNo assigned EC number0.59800.96630.9791yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0042006001
hypothetical protein (531 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_XV1096
hypothetical protein (191 aa)
  •     0.470
estExt_Genewise1_v1.C_440425
RecName- Full=Ribosomal protein L19; (210 aa)
  •     0.470
gw1.122.137.1
annotation not avaliable (183 aa)
  •     0.468
estExt_fgenesh4_kg.C_LG_IV0028
RecName- Full=Ribosomal protein L19; (211 aa)
  •     0.468
estExt_Genewise1_v1.C_LG_XII0631
RecName- Full=Ribosomal protein L19; (212 aa)
  •     0.468
gw1.II.1883.1
RecName- Full=Proteasome subunit alpha type; EC=3.4.25.1;; The proteasome is a multicatalytic p [...] (242 aa)
  •     0.464
gw1.X.2543.1
hypothetical protein (141 aa)
  •     0.463
estExt_Genewise1_v1.C_LG_V1393
RecName- Full=Proteasome subunit alpha type; EC=3.4.25.1;; The proteasome is a multicatalytic p [...] (241 aa)
  •     0.462
grail3.0049009201
hypothetical protein (57 aa)
  •     0.444
eugene3.00081030
SubName- Full=Putative uncharacterized protein; (155 aa)
  ••    0.441

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 0.0
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 0.0
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-179
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-168
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-164
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-155
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 1e-145
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 1e-125
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-113
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 1e-111
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 1e-110
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 1e-110
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 1e-108
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-108
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 1e-107
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 1e-104
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 3e-96
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 6e-96
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 2e-93
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 2e-82
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 2e-76
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 1e-62
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 6e-20
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 7e-17
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 2e-16
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 7e-16
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 8e-14
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 3e-13
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 4e-13
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 2e-12
CHL00093529 CHL00093, groEL, chaperonin GroEL 1e-11
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 3e-10
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 6e-10
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 8e-08
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 1e-07
CHL00093529 CHL00093, groEL, chaperonin GroEL 3e-07
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 1e-06
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 2e-04
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.002
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.003
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 0.003
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information 
 Score =  915 bits (2366), Expect = 0.0
 Identities = 381/514 (74%), Positives = 448/514 (87%)

Query: 21  DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQ 80
           D ++  D+R +NI AA+AVADA+RTSLGP+GMDKMI T  GEVIITNDGATIL +M VL 
Sbjct: 2   DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLH 61

Query: 81  PAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAV 140
           PAAKMLVELSK+QD  AGDGTT+VVV+AGALL  C  LL  GIHPTVIS++   AA  AV
Sbjct: 62  PAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAV 121

Query: 141 DVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDL 200
           ++L +M++PV+L+DR+SL+KSA+TSLNSKVVSQYS+LLAP+AVD+VL V+DP     VDL
Sbjct: 122 EILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDL 181

Query: 201 RDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQS 260
           +DIRIVKKLGGT++DTELV GLVF +KAS  AGGPTR+E AKI +IQF +SPPKTD++ +
Sbjct: 182 KDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNN 241

Query: 261 IVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIM 320
           IVV+DY QMDRIL+EER YIL M KKIK +GCNVLLIQKSILRDAV+DL+LH+LAK KIM
Sbjct: 242 IVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIM 301

Query: 321 VVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGR 380
           VVKD+ER+EIEFI KT+ C P+A+IDHF  +KLG ADLVEE+SLGDGKIVKITG+K+ G+
Sbjct: 302 VVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGK 361

Query: 381 TTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALS 440
           T T+LVRGSN+LVLDEAERSLHDALCV+RCLV KR LI GGGAPEIE++ QL  WA+ L+
Sbjct: 362 TVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLT 421

Query: 441 GMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNIL 500
           G+E+YCVR+FA+ALEVIPYTLAENAGLNP++IVTELRNRHAQGE N+GINVRKG ITNIL
Sbjct: 422 GVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNIL 481

Query: 501 EENVVQPLLVSTSAITLAAECVRMILKIDDIVTV 534
           EENVVQPLLVSTSAITLA E VRMILKIDDIV  
Sbjct: 482 EENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 515
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 535
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.85
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information 
Probab=100.00  E-value=4e-108  Score=884.79  Aligned_cols=515  Identities=69%  Similarity=1.058  Sum_probs=494.5

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCC
Q 009431           20 VDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGD   99 (535)
Q Consensus        20 ~~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD   99 (535)
                      ++..++.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||
T Consensus         2 ~~~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GD   81 (517)
T TIGR02342         2 QDKDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGD   81 (517)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCC
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHH
Q 009431          100 GTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLA  179 (535)
Q Consensus       100 Gttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls  179 (535)
                      ||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++|++..+.+.|.++++|++++|+.+.+.++|+
T Consensus        82 GTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls  161 (517)
T TIGR02342        82 GTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLA  161 (517)
T ss_pred             CcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999877688899999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCC-CCCceeeecceEEEEeeecCCCCcccc
Q 009431          180 PLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHA-AGGPTRVENAKIAVIQFQISPPKTDIE  258 (535)
Q Consensus       180 ~li~~a~~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~-~~~~~~~~n~~Ill~~~~L~~~~~~~~  258 (535)
                      +++++|+..+++....+.+|+++|+|+++.|++.+||++++|++|+++ +.+ .+||+.++|++|++++++|++++++.+
T Consensus       162 ~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~-~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~  240 (517)
T TIGR02342       162 PLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQK-ASRSAGGPTRIEKAKIGLIQFQISPPKTDME  240 (517)
T ss_pred             HHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEecc-ccccCCCCccccCCcEEEEecCCCCCccccc
Confidence            999999999986432347888999999999999999999999999766 445 589999999999999999999999999


Q ss_pred             ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhC
Q 009431          259 QSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLN  338 (535)
Q Consensus       259 ~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tG  338 (535)
                      .++.+++++++++++++|+++++++++++.+.|++||+|+++|+++++++++++||.++||++++++++++|+|||++||
T Consensus       241 ~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tG  320 (517)
T TIGR02342       241 NQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIG  320 (517)
T ss_pred             ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 009431          339 CLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLI  418 (535)
Q Consensus       339 a~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vv  418 (535)
                      |++++++++++++++|+|+.|++.++|+++|++|++++.+++.+||+|||+|+.+++|++|+++||+++++++++++++|
T Consensus       321 a~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~V  400 (517)
T TIGR02342       321 CKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLI  400 (517)
T ss_pred             CEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence            99999999999999999999999999999999999998745899999999999999999999999999999999999999


Q ss_pred             ccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccc
Q 009431          419 AGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITN  498 (535)
Q Consensus       419 pGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d  498 (535)
                      ||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|+.++.++|+|+.+|++.|
T Consensus       401 pGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d  480 (517)
T TIGR02342       401 PGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITD  480 (517)
T ss_pred             ECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccc
Confidence            99999999999999999888889999999999999999999999999999999999999999887788999999999999


Q ss_pred             cccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcCC
Q 009431          499 ILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR  535 (535)
Q Consensus       499 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~  535 (535)
                      |++.|||||+.+|++++++|+|+|++|||||++|+++
T Consensus       481 ~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~~  517 (517)
T TIGR02342       481 MLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFTR  517 (517)
T ss_pred             hhhccceEcHHHHHHHHHHHHHHHHHHhcccceeecC
Confidence            9999999999999999999999999999999999875

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 0.0
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-170
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 2e-98
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 5e-97
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 1e-96
3izh_A513 Mm-Cpn D386a With Atp Length = 513 2e-93
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 2e-93
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 7e-93
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 8e-93
3izi_A513 Mm-Cpn Rls With Atp Length = 513 8e-93
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 1e-91
1a6d_A545 Thermosome From T. Acidophilum Length = 545 2e-91
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-91
1a6d_B543 Thermosome From T. Acidophilum Length = 543 6e-90
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 8e-88
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 8e-88
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 3e-87
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 7e-87
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-80
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-71
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-68
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-66
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-65
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-61
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-60
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-58
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-55
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-51
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-51
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-47
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-35
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-25
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 1e-18
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 3e-15
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 8e-12
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 6e-04
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 2e-11
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 2e-11
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 2e-11
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 3e-11
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 3e-11
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 3e-11
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 3e-11
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 4e-11
1ss8_A524 Groel Length = 524 4e-11
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 4e-11
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 5e-11
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 5e-11
1oel_A547 Conformational Variability In The Refined Structure 5e-11
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 6e-11
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 5e-10
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 3e-09
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 5e-07
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 3e-06
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/492 (66%), Positives = 408/492 (82%), Gaps = 3/492 (0%)
Query: 45  TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTV 104
           TSLGPKGMDKMI    G+V ITNDGATIL +M+VL PAA+MLVELSK+QD  AGDGTT+V
Sbjct: 29  TSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSV 88
Query: 105 VVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSAST 164
           V+IAG+LL  C  LL  GIHPT+IS++  KA    +++LT M+ PVELSDR++L+ SA+T
Sbjct: 89  VIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSAAT 148
Query: 165 SLNSKVVSQYSTLLAPLAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVF 224
           SLNSKVVSQYS+LL+P++VD+V+ V+DP     VDLRDI+IVKKLGGT+DD ELV+GLV 
Sbjct: 149 SLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVL 208
Query: 225 DKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMI 284
            +K +++  G TRVE AKI +IQF +S PKTD++  IVVSDY QMDR+L+EER YIL ++
Sbjct: 209 TQKVANS--GITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNLV 266
Query: 285 KKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIAN 344
           K+IK TGCNVLLIQKSILRDA++DL+LH+L K KIMVVKD+ER++IEFI KT+   P+A+
Sbjct: 267 KQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAH 326
Query: 345 IDHFRAEKLGHADLVEELSL-GDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHD 403
           +D F A+ LG A+L EE+SL G GK++KITG    G+T T++VRGSN+LV++EAERS+HD
Sbjct: 327 VDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHD 386
Query: 404 ALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAE 463
           ALCV+RCLV KR LIAGGGAPEIEL+ +L  +++ LSGME YC+R+FA+A+EVIP TLAE
Sbjct: 387 ALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAE 446
Query: 464 NAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVR 523
           NAGLNP++ VTELRNRHAQGE  +GINVRKG I+NILEE VVQPLLVS SA+TLA E VR
Sbjct: 447 NAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVR 506
Query: 524 MILKIDDIVTVR 535
            ILKIDD+V  R
Sbjct: 507 SILKIDDVVNTR 518
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query535
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 0.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 0.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 0.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 0.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 0.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 0.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 0.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 0.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 0.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 0.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 0.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 0.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 0.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 0.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 0.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 0.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 0.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 8e-49
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 1e-43
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 5e-15
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 2e-04
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 8e-15
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 5e-04
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 1e-14
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 1e-05
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 1e-14
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
 Score =  752 bits (1944), Expect = 0.0
 Identities = 311/537 (57%), Positives = 414/537 (77%), Gaps = 11/537 (2%)

Query: 1   MASPAVVPSQPRSSKTESYVDNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTAS 60
           M++     +         + + ++ +++R+ANI+AAR+VADA+RTSLGPKGMDKMI T+ 
Sbjct: 1   MSAKVPSNAT--------FKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSR 52

Query: 61  GEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLS 120
           GE+II+NDG TIL +M +L P A+MLVE+S +QD+ AGDGTT+VV++ GALL     LL+
Sbjct: 53  GEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLN 112

Query: 121 SGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAP 180
            GIHPT+I+D+   AA  +VD+L  M   V LSDR+ LV++ASTSL+SK+VSQYS+ LAP
Sbjct: 113 KGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAP 172

Query: 181 LAVDSVLSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVEN 240
           LAVDSVL + D    + VDL DIR+VKK+GGT+DDTE++ G+V  + A  +AGGPTR E 
Sbjct: 173 LAVDSVLKISDENSKN-VDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEK 231

Query: 241 AKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKS 300
           AKI +IQFQISPPK D E +I+V+DY QMD+ILKEER Y+L + KKIK   CNVLLIQKS
Sbjct: 232 AKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKS 291

Query: 301 ILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVE 360
           ILRDAV DL+LH+L+K  IMVVKD+ER+EIEF++K L C PIA+I+ F  ++L  ADLVE
Sbjct: 292 ILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDSADLVE 351

Query: 361 ELSLGDGKIVKITGIKDM--GRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLI 418
           E+     KIV++TGI++     T +V++RG+N +++DE ERSLHDALCV+RCLV +R LI
Sbjct: 352 EIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLI 411

Query: 419 AGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRN 478
           AGGGAPEIE+SR+L   A+++ G++ +  + FA ALEVIP TLAENAGLN + +VTELR+
Sbjct: 412 AGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRS 471

Query: 479 RHAQGEINSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 535
           +H  GE+N GI+VR+   TN  EE+++QP+LVSTSAITLA+ECV+ IL+IDDI   R
Sbjct: 472 KHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFSR 528
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.97
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.57
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.54
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.52
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
Probab=100.00  E-value=2.7e-114  Score=933.56  Aligned_cols=527  Identities=38%  Similarity=0.598  Sum_probs=487.3

Q ss_pred             CCCCCCCCCCCCCCceEeec---cccchHHHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhcccc
Q 009431            1 MASPAVVPSQPRSSKTESYV---DNKRKEDIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKME   77 (535)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~   77 (535)
                      |||.|.+..|....|+.+++   ++.+|.+++..|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~   80 (553)
T 3ko1_A            1 MASTATVATTPEGIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMD   80 (553)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSC
T ss_pred             CCccceeecCCCCCeEEEEecCcccchhHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhh
Confidence            78889888888778999987   888999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHH
Q 009431           78 VLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDS  157 (535)
Q Consensus        78 ~~hP~a~ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~  157 (535)
                      ++||+|+|++++|++||+++||||||++|||++||+++.+++++|+||+.|++||+.|++.++++|++++++++..+++.
T Consensus        81 v~hP~Akll~e~a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~  160 (553)
T 3ko1_A           81 LQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDL  160 (553)
T ss_dssp             CCSHHHHHHHHHHHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHH
T ss_pred             ccChhHHHHHHHhhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCCCCCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998778999


Q ss_pred             HHHHHHHHhcCcccchhhhhHHHHHHHHHHhccCCC-CCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCce
Q 009431          158 LVKSASTSLNSKVVSQYSTLLAPLAVDSVLSVVDPC-KPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPT  236 (535)
Q Consensus       158 l~~va~tsl~sk~~~~~~~~ls~li~~a~~~v~~~~-~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~  236 (535)
                      |.++|+|+++||+.++|+++|+++++||+.++++.. +...+|+++|+|++..|+++.||++++|++|+++ +.+++||+
T Consensus       161 L~~vA~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~-~~~~~m~~  239 (553)
T 3ko1_A          161 LRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKE-VVHPGMPK  239 (553)
T ss_dssp             HHHHHHHHHTTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSC-BSCTTSCS
T ss_pred             HHHHHHHHhhHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEeccc-ccCCCCcc
Confidence            999999999999999999999999999999998752 2124888999999999999999999999999766 56788999


Q ss_pred             eeecceEEEEeeecCCCCccccceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHh
Q 009431          237 RVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAK  316 (535)
Q Consensus       237 ~~~n~~Ill~~~~L~~~~~~~~~~i~i~~~~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~  316 (535)
                      .++||||++++++|+++++++++++.++++++++.+++.|++++++++++|.+.|+||||++++|     ++.+++||.+
T Consensus       240 ~ien~kIll~d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I-----~~~al~~L~~  314 (553)
T 3ko1_A          240 RLENAKIALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGI-----DEVAQSYLAK  314 (553)
T ss_dssp             CCBSCEEEEECSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCB-----CSHHHHHHHH
T ss_pred             ccccceEEEecCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccCh-----HHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999     9999999999


Q ss_pred             cCceeccCCCHHHHHHHHHHhCCeeeccccCCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHH
Q 009431          317 SKIMVVKDVERDEIEFITKTLNCLPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDE  396 (535)
Q Consensus       317 ~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e  396 (535)
                      +||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|.+ ++.|||+|||+|+.+++|
T Consensus       315 ~gI~~v~~v~k~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~-~~~~TI~lrG~te~~l~E  393 (553)
T 3ko1_A          315 KGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKN-PKSISILIRGGLERLVDE  393 (553)
T ss_dssp             HTCEEECCCCHHHHHHHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSS-SSCEEEEECCSSTTHHHH
T ss_pred             cchhhhhhhhhhhHHHHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCC-CceEEEeeeccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988 899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHH
Q 009431          397 AERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTEL  476 (535)
Q Consensus       397 ~~~~i~dal~~~~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l  476 (535)
                      +||+++|||+++|++++++++|||||++|++|+.+|++++.++++++|+++++|++||+.||++|++|||+|+.+++.+|
T Consensus       394 ~er~l~DAl~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l  473 (553)
T 3ko1_A          394 TERALRDALGTVADVIKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKL  473 (553)
T ss_dssp             HHHHHHHHHHHHHHHHHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCceecCCceeEeHHHHHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHH
Confidence            99999999999999999988999999999999999999998899999999999999999999999999999999999999


Q ss_pred             HHHhhcCC-CceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHHchhhhhcC
Q 009431          477 RNRHAQGE-INSGINVRKGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTV  534 (535)
Q Consensus       477 ~~~h~~~~-~~~Gid~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~  534 (535)
                      ++.|..++ .++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|.+
T Consensus       474 ~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  532 (553)
T 3ko1_A          474 RSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSA  532 (553)
T ss_dssp             HHTTCSGGGTTEEEETTTTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC
T ss_pred             HHHhhCcCCceEeEEeecCCchHHHHhCccchhhhhhhhhhhcchhheEEEehHHHHHh
Confidence            99987665 78999999999999999999999999999999999999999999999975
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 535
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 7e-39
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 8e-38
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 2e-37
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 7e-35
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 9e-34
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 3e-25
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 6e-32
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-28
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-30
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-16
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 3e-25
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 2e-20
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 3e-20
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 1e-19
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 5e-19
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 6e-15
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-09
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 2e-10
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 8e-09
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score =  137 bits (345), Expect = 7e-39
 Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 6/158 (3%)

Query: 220 KGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDRILKEERNY 279
           +G+V DK+  H    P RVENAKIA+I   +   KT+ +  I ++   Q+   L++E   
Sbjct: 1   RGVVIDKEVVHP-RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKM 59

Query: 280 ILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNC 339
           +  M+  I  TG NV+ +QK I      DL+ HYLAK  IM V+ V++ ++E + K    
Sbjct: 60  LKDMVDHIAQTGANVVFVQKGID-----DLAQHYLAKYGIMAVRRVKKSDMEKLAKATGA 114

Query: 340 LPIANIDHFRAEKLGHADLVEELSLGDGKIVKITGIKD 377
             + N+     E LG+A++VEE  L    ++ + G K+
Sbjct: 115 KIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN 152
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query535
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.97
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.97
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.94
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.92
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.55
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.54
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.48
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.47
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.45
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.43
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.43
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.09
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 97.53
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 96.69
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 96.38
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 95.82
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 89.99
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 82.26
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=9.2e-53  Score=406.42  Aligned_cols=242  Identities=45%  Similarity=0.739  Sum_probs=231.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCceeeecCCCCeEEccchHHHhccccccChHHHHHHHHHhhcccccCCchhHHHH
Q 009431           27 DIRQANIVAARAVADAVRTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVV  106 (535)
Q Consensus        27 ~~~~~~i~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDg~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vl  106 (535)
                      +++..|+.+|+.|+++|++||||+|++|||+++.|++++||||+||++++.++||.++++++++++|++++||||||+++
T Consensus         2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~v   81 (243)
T d1a6db1           2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVI   81 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHHHHccceeCCCCCHHHHHHHHHHHhcCcccchhhhhHHHHHHHHH
Q 009431          107 IAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDSV  186 (535)
Q Consensus       107 La~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~l~~~~~~~~~~~~~~l~~va~tsl~sk~~~~~~~~ls~li~~a~  186 (535)
                      |+++||+++.+++..|+||..|++||+.|++.+++.|++++.++..                                  
T Consensus        82 l~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~----------------------------------  127 (243)
T d1a6db1          82 IAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAY----------------------------------  127 (243)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECEE----------------------------------
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccc----------------------------------
Confidence            9999999999999999999999999999999999988776544321                                  


Q ss_pred             HhccCCCCCCCcccccEEEEEcCCCCcceeeeEeeEEEecCCCCCCCCceeeecceEEEEeeecCCCCccccceEEEcCH
Q 009431          187 LSVVDPCKPDLVDLRDIRIVKKLGGTVDDTELVKGLVFDKKASHAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDY  266 (535)
Q Consensus       187 ~~v~~~~~~~~~~~~~I~i~k~~G~~~~dS~li~Giv~~~~~~~~~~~~~~~~n~~Ill~~~~L~~~~~~~~~~i~i~~~  266 (535)
                                         .  +                                                         
T Consensus       128 -------------------~--~---------------------------------------------------------  129 (243)
T d1a6db1         128 -------------------A--A---------------------------------------------------------  129 (243)
T ss_dssp             -------------------E--E---------------------------------------------------------
T ss_pred             -------------------c--c---------------------------------------------------------
Confidence                               0  0                                                         


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccccccchHHHHHHHhcCceeccCCCHHHHHHHHHHhCCeeecccc
Q 009431          267 TQMDRILKEERNYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKSKIMVVKDVERDEIEFITKTLNCLPIANID  346 (535)
Q Consensus       267 ~~~~~~~~~E~~~i~~~l~~i~~~~~~lvi~~~~I~~~~l~~~~~~~l~~~~I~~v~~v~~~~L~~ia~~tGa~ii~~~~  346 (535)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (243)
T d1a6db1         130 --------------------------------------------------------------------------------  129 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCceeeeEEEEEEecceEEEEEecccCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccccCChhHH
Q 009431          347 HFRAEKLGHADLVEELSLGDGKIVKITGIKDMGRTTTVLVRGSNQLVLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEI  426 (535)
Q Consensus       347 ~l~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~E~  426 (535)
                                                                                               |||++|+
T Consensus       130 -------------------------------------------------------------------------ggGa~e~  136 (243)
T d1a6db1         130 -------------------------------------------------------------------------GGGATAA  136 (243)
T ss_dssp             -------------------------------------------------------------------------TTTHHHH
T ss_pred             -------------------------------------------------------------------------CCCchhH
Confidence                                                                                     6999999


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCceeEEccCCcccccccCCccc
Q 009431          427 ELSRQLGAWAKALSGMERYCVRSFAEALEVIPYTLAENAGLNPLAIVTELRNRHAQGEINSGINVRKGQITNILEENVVQ  506 (535)
Q Consensus       427 ~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~~~~~~l~~l~~~h~~~~~~~Gid~~~~~~~d~~~~gI~d  506 (535)
                      .++..|+++++++++++++++++|++||+.||++|++|+|+|+.+++.+++..|..++.++|+|..+|++.||.+.||||
T Consensus       137 ~~a~~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~d  216 (243)
T d1a6db1         137 EIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIE  216 (243)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEE
T ss_pred             HHHHHHhhhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEe
Confidence            99999999999999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHchhhhhc
Q 009431          507 PLLVSTSAITLAAECVRMILKIDDIVT  533 (535)
Q Consensus       507 p~~vk~~~l~~A~e~a~~iL~iD~ii~  533 (535)
                      |+.+|+++|+.|+|+|++|||||+||.
T Consensus       217 p~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         217 PIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999974
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure