Citrus Sinensis ID: 009432

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----
Protein Sequence
MRVDENNYQITSDNERRLKLIRDHGGNGAGNAPFHNTNGFNSFENRVDYNSDWQNYGPNNQPPPSIPPLPPPQQGYDNFNVQGGYLPPLPTSPPPPMPVEPPLPSPAPPNTSLFPVHATVPSSYPPITRVSSELISEESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDEDSDGLLAQQEKETNSIAVSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSSKWSNDLNEDDDETSGVVKGNSNALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVSLAAVMVAYNLDCWKYFSQFVKIIVNLLF
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHccccccccHHHHHHHHHcccccccccHHccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHcccccccEEEccccccccccccHHcccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcHHHHccccccccccccEEEEEcccccccHHHHHHHHHHHHHHccccccEEEEcccEEEEEcEEEEcccccccccccccccEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHccccccHHHHHHHHHHcccccccEEEEEHHHHcccHHHHHHccEEEcccccccccccccccccccccccccHHHcccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHcccccEEEcccccccccEEEEEcHHcccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mrvdennyqitsdNERRLKLIRdhggngagnapfhntngfnsfenrvdynsdwqnygpnnqpppsipplpppqqgydnfnvqggylpplptsppppmpvepplpspappntslfpvhatvpssyppitrvsSELIseesrtlpmqypgeshlfplrqlspdkpkvVNALHllkqphratrpdhFAIIlrglpgsgkSYIAKMLRDLEvenggdaprihsmddYFMTEVEkvedsdvskssgslrskkpvTKMVMEYCYEPEMEEAYRSSMLKAFTRtldegnftivivddrnlrvADFAQFWATAKRSGYEVYILEAtykdpagcaarnvhgftlDDIERMAGQWEEAPTLYLQLDIKtlfhgddlkesgiKEVEmdmdedsdgLLAQQEKETNSIavsitgedppadfprnekrwdaegdrpAEVVKDLgsskwsndlnedddetsgvvkgnsnaLSGLFQLYVKegksvhwgdqvgdtgFSIGAAKKSKMLSLVIGPGAGYNLVSLAAVMVAYNLDCWKYFSQFVKIIVNLLF
Flexible Loop (DISEMBL)
mrvdennyqitsdneRRLKLIRDHGGNGAGNAPFHNTNGFNSFENRVDYNSDWQNYGPNNQPPPSIPPLPPPQQGYDNFNVQGGYLPPLPTSPPPPMPVEPPLPSPAPPNTSLFPVHATVPSSYPPITRVSSELISEESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLkqphratrpdHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKvedsdvskssgslrskkpvtkMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDEDSDGLLAQQEKEtnsiavsitgedppadfprnekrwdaegdrpAEVVKdlgsskwsndlnedDDETSGVVKGNSNALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVSLAAVMVAYNLDCWKYFSQFVKIIVNLLF
Low Complexity Region (SEG)
MRVDENNYQITSDNERRLKLIRDHGGNGAGNAPFHNTNGFNSFENRVDYNSDWQNYGpnnqpppsipplpppqqGYDNFNVQGGYlpplptsppppmpvepplpspappNTSLFPVHATVPSSYPPITRVSSELISEESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDEDSDGLLAQQEKETNSIAVSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSSKWSNDLNEDDDETSGVVKGNSNALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVSLAAVMVAYNLDCWKYFSQFVKIIVNLLF
Disordered region (IsUnstruct)
********************************************************************************************************************************************************************VVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEV**************Y****************************MVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGD*******************************************************************************************ALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVSLAAVMVAYNLDCWKYFSQFVKIIVNLL*
Disordered Region (DISOPRED)
********************************************************************************************************************************************************************VVNALHLLKQ****TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVE*******************VTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTL***************************************************************************************************************HWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVSLAAVMVAYNLDCWKYFSQFVKIIVNLLF
Disordered Region (DISEMBL)
*********ITSDNERRLKLIRDHGGNGAGNAPFHNTNGFNSFENRVDYNSDWQNYGPNNQPPPSIPPLPPPQQGYDNFNVQGGYLPPLPTSPPPPMPVEPPLPSPAPPNTSLFPVHATVPSSYPPITRVSSELISEESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVE***************SKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDEDSDGLLAQQEKETNSIAVSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSSKWSND**********VVKGNSNALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVSLAAVMVAYNLDCWKYFSQFVKIIVNLLF
Disordered Region (DISPRO)
*RVDENNYQITSDNERRLKLIRDHGGNGAGNAPFHNTNGFNSFENRVDYNSDWQN**PNNQPPPSIPPLPPPQQGYDNFNVQGGYLPPLPT***********************************************************************PKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSD*********SKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMD*******************************************************************************LSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVSLAAVMVAYNLDCWKYFSQFVKIIVNLLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRVDENNYQITSDNERRLKLIRDHGGNGAGNAPFHNTNGFNSFENRVDYNSDWQNYGPNNQPPPSIPPLPPPQQGYDNFNVQGGYLPPLPTSPPPPMPVEPPLPSPAPPNTSLFPVHATVPSSYPPITRVSSELISEESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDEDSDGLLAQQEKETNSIAVSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSSKWSNDLNEDDDETSGVVKGNSNALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVSLAAVMVAYNLDCWKYFSQFVKIIVNLLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	535	2.2.26 [Sep-21-2011]
P0CB49	1376	YLP motif-containing prot	yes	no	0.429	0.167	0.457	2e-51
Q9R0I7	1386	YLP motif-containing prot	no	no	0.429	0.165	0.457	2e-51
P49750	1951	YLP motif-containing prot	no	no	0.413	0.113	0.476	1e-46
Q5TBK1	243	NEDD4-binding protein 2-l	no	no	0.246	0.543	0.273	3e-05
Q3V2Q8	238	NEDD4-binding protein 2-l	no	no	0.246	0.554	0.273	4e-05

>sp|P0CB49|YLPM1_RAT YLP motif-containing protein 1 OS=Rattus norvegicus GN=Ylpm1 PE=1 SV=1

 Score =  204 bits (518), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/249 (45%), Positives = 152/249 (61%), Gaps = 19/249 (7%)

Query: 142  LPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAK 201
            +P+  P   H  P       KP+  N   +LK P R +RP+   +I+RGLPGSGK+++AK
Sbjct: 1023 MPLPAPSLGHQPPPVPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKTHVAK 1082

Query: 202  MLRDLEVENGGDAPRIHSMDDYFMTEVEKVE-DSDVSKSSGSLRSKKPVTKMVMEYCYEP 260
            ++RD EVE GG APR+ S+DDYF+ EVEK E D D         S K V K VMEY YE 
Sbjct: 1083 LIRDKEVEFGGPAPRVLSLDDYFIAEVEKEEKDPD---------SGKKVKKKVMEYEYEA 1133

Query: 261  EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYK 320
            +MEE YR+SM K F +TLD+G F  +I+D  N RV  F QFW+ AK  G+EVY+ E +  
Sbjct: 1134 DMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMS-A 1192

Query: 321  DPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDE 380
            D   C  RN+HG  L +I +MA  WE AP   ++LDI++L     L+++ I+EVEM   E
Sbjct: 1193 DNQTCGKRNIHGRKLKEINKMAEHWEAAPRHMMRLDIRSL-----LQDAAIEEVEM---E 1244

Query: 381  DSDGLLAQQ 389
            D D  +  Q
Sbjct: 1245 DFDANIEDQ 1253

Plays a role in the reduction of telomerase activity during differentiation of embryonic stem cells by binding to the core promoter of TERT and controlling its down-regulation.
Rattus norvegicus (taxid: 10116)

>sp|Q9R0I7|YLPM1_MOUSE YLP motif-containing protein 1 OS=Mus musculus GN=Ylpm1 PE=2 SV=2

 Score =  204 bits (518), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/249 (45%), Positives = 152/249 (61%), Gaps = 19/249 (7%)

Query: 142  LPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAK 201
            +P+  P   H  P       KP+  N   +LK P R +RP+   +I+RGLPGSGK+++AK
Sbjct: 1033 MPLPAPALGHQPPPVPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKTHVAK 1092

Query: 202  MLRDLEVENGGDAPRIHSMDDYFMTEVEKVE-DSDVSKSSGSLRSKKPVTKMVMEYCYEP 260
            ++RD EVE GG APR+ S+DDYF+ EVEK E D D         S K V K VMEY YE 
Sbjct: 1093 LIRDKEVEFGGPAPRVLSLDDYFIAEVEKEEKDPD---------SGKKVKKKVMEYEYEA 1143

Query: 261  EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYK 320
            +MEE YR+SM K F +TLD+G F  +I+D  N RV  F QFW+ AK  G+EVY+ E +  
Sbjct: 1144 DMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMS-A 1202

Query: 321  DPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDE 380
            D   C  RN+HG  L +I +MA  WE AP   ++LDI++L     L+++ I+EVEM   E
Sbjct: 1203 DNQTCGKRNIHGRKLKEINKMAEHWEVAPRHMMRLDIRSL-----LQDAAIEEVEM---E 1254

Query: 381  DSDGLLAQQ 389
            D D  +  Q
Sbjct: 1255 DFDANIEDQ 1263

Plays a role in the reduction of telomerase activity during differentiation of embryonic stem cells by binding to the core promoter of TERT and controlling its down-regulation.

Mus musculus (taxid: 10090)

>sp|P49750|YLPM1_HUMAN YLP motif-containing protein 1 OS=Homo sapiens GN=YLPM1 PE=1 SV=3

 Score =  187 bits (476), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/237 (47%), Positives = 150/237 (63%), Gaps = 16/237 (6%)

Query: 142  LPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAK 201
            +P+  P  SH  P       KP+  N   +LK P R +RP+   +I+RGLPGSGK+++AK
Sbjct: 1598 MPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKTHVAK 1657

Query: 202  MLRDLEVENGGDAPRIHSMDDYFMTEVEKVE-DSDVSKSSGSLRSKKPVTKMVMEYCYEP 260
            ++RD EVE GG APR+ S+DDYF+TEVEK E D D         S K V K VMEY YE 
Sbjct: 1658 LIRDKEVEFGGPAPRVLSLDDYFITEVEKEEKDPD---------SGKKVKKKVMEYEYEA 1708

Query: 261  EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYK 320
            EMEE YR+SM K F +TLD+G F  +I+D  N RV  F QFW+ AK  G+EVY+ E +  
Sbjct: 1709 EMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMS-A 1767

Query: 321  DPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMD 377
            D   C  RN+HG  L +I +MA  WE AP   ++LDI++L     L+++ I+EVEM+
Sbjct: 1768 DNQTCGKRNIHGRKLKEINKMADHWETAPRHMMRLDIRSL-----LQDAAIEEVEME 1819

Plays a role in the reduction of telomerase activity during differentiation of embryonic stem cells by binding to the core promoter of TERT and controlling its down-regulation.

Homo sapiens (taxid: 9606)

>sp|Q5TBK1|N42L1_HUMAN NEDD4-binding protein 2-like 1 OS=Homo sapiens GN=N4BP2L1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 40/172 (23%)

Query: 187 ILRGLPGSGKSYIAKMLRDLEVENGGDAPR--IHSMDDYFMTEVEKVEDSDVSKSSGSLR 244
           +LRGLPGSGK+ +A+ L+        D PR  I S DD+F  E             G+  
Sbjct: 46  LLRGLPGSGKTTLARQLQH-------DFPRALIFSTDDFFFRE------------DGA-- 84

Query: 245 SKKPVTKMVMEYCYEPE-MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWA 303
                      Y + P+ +EEA+  +  +A  R       + +I+D+ NL   +   +  
Sbjct: 85  -----------YEFNPDFLEEAHEWNQKRA--RKAMRNGISPIIIDNTNLHAWEMKPYAV 131

Query: 304 TAKRSGYEVYILEATYK---DPAGCAARNVHGFTLDDIERMAGQWEEAPTLY 352
            A  + YEV   E   +   +    A RN+HG + + I RM  ++E   T +
Sbjct: 132 MALENNYEVIFREPDTRWKFNVQELARRNIHGVSREKIHRMKERYEHDVTFH 183

Homo sapiens (taxid: 9606)

>sp|Q3V2Q8|N42L1_MOUSE NEDD4-binding protein 2-like 1 OS=Mus musculus GN=N4bp2l1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 40/172 (23%)

Query: 187 ILRGLPGSGKSYIAKMLRDLEVENGGDAPR--IHSMDDYFMTEVEKVEDSDVSKSSGSLR 244
           +LRGLPGSGK+ +A+ L+        D PR  I S DD+F             K  G+  
Sbjct: 44  LLRGLPGSGKTTLARQLQH-------DYPRALIFSTDDFFF------------KEDGT-- 82

Query: 245 SKKPVTKMVMEYCYEPE-MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWA 303
                      Y + P  +EEA+  +  +A  R       + +I+D+ NL   +   +  
Sbjct: 83  -----------YEFNPNLLEEAHEWNQRRA--RKAMRNGISPIIIDNTNLHAWEMKPYAV 129

Query: 304 TAKRSGYEVYILEATYK---DPAGCAARNVHGFTLDDIERMAGQWEEAPTLY 352
            A  + YEV   E   +   +    A RN+HG   + I+RM  ++E   T +
Sbjct: 130 MALENNYEVIFREPDTRWKFNVQELARRNIHGVPKEKIQRMKERYEHNVTFH 181


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,556,263
Number of Sequences: 539616
Number of extensions: 11395343
Number of successful extensions: 82645
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 1468
Number of HSP's that attempted gapping in prelim test: 51131
Number of HSP's gapped (non-prelim): 13623
length of query: 535
length of database: 191,569,459
effective HSP length: 122
effective length of query: 413
effective length of database: 125,736,307
effective search space: 51929094791
effective search space used: 51929094791
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
356565077	633	PREDICTED: uncharacterized protein LOC10	0.745	0.630	0.669	1e-145
255540925	676	nuclear protein zap, putative [Ricinus c	0.887	0.702	0.548	1e-145
356512459	624	PREDICTED: uncharacterized protein LOC10	0.914	0.783	0.568	1e-144
297734016	698	unnamed protein product [Vitis vinifera]	0.923	0.707	0.559	1e-140
359491338	1001	PREDICTED: uncharacterized protein LOC10	0.749	0.400	0.640	1e-140
449469659	884	PREDICTED: uncharacterized protein LOC10	0.755	0.457	0.627	1e-137
224124150	648	predicted protein [Populus trichocarpa]	0.721	0.595	0.644	1e-136
334188579	640	ZAP - like protein [Arabidopsis thaliana	0.635	0.531	0.646	1e-122
334188581	644	ZAP - like protein [Arabidopsis thaliana	0.642	0.534	0.646	1e-122
30697732	661	ZAP - like protein [Arabidopsis thaliana	0.642	0.520	0.616	1e-119

>gi|356565077|ref|XP_003550771.1| PREDICTED: uncharacterized protein LOC100804293 [Glycine max]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 275/411 (66%), Positives = 313/411 (76%), Gaps = 12/411 (2%)

Query: 99  VEPPLPSPAPPNTSLFPVHATVPSSYPPITRVSSELISEESRTLPMQYPGESHLFPLRQL 158
           +EP +    PP  SLFPV  + P S P      S   SEE+     QY G+S  F L QL
Sbjct: 181 MEPSMNQLKPP--SLFPVAESQPMSQPYYH--PSAFPSEEASK--QQYLGDSQSFSLNQL 234

Query: 159 SPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIH 218
           + ++PKV++A HL + PHRA+RPDHF II RGLPGSGKSY+AKMLRDLEVENGGDAPRIH
Sbjct: 235 AAERPKVIDASHLFRHPHRASRPDHFVIIFRGLPGSGKSYLAKMLRDLEVENGGDAPRIH 294

Query: 219 SMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTL 278
           SMDDYFMTEV KVED + SKSS S R+KKPVTK VMEYCYEPEMEEAYRSSMLKAF + +
Sbjct: 295 SMDDYFMTEVGKVEDGEASKSSSSGRNKKPVTKKVMEYCYEPEMEEAYRSSMLKAFKKNV 354

Query: 279 DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDI 338
           +EG FT +IVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDP GCAARNVHGFT +DI
Sbjct: 355 EEGVFTFIIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPVGCAARNVHGFTQEDI 414

Query: 339 ERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDED-SDGLLAQQEKETNSIA 397
           E+M+ QWEEA +LYLQLD+K+LFHGDDLKES I+EV+MDM++D  D L   Q KE   + 
Sbjct: 415 EKMSKQWEEASSLYLQLDVKSLFHGDDLKESRIQEVDMDMEDDLGDALPPFQGKEDEKVV 474

Query: 398 VSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSSKWSNDLNEDD-DETSGVVKGNSNA 456
               GED  A F +  K W AE + P E V++LG SKWS D  EDD D+T G +KGN NA
Sbjct: 475 DPPVGED--ASFLKAGKNWHAEEEHPTE-VRELGKSKWSEDFGEDDIDQTEG-MKGNINA 530

Query: 457 LSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVS 507
           LSGL   Y KE KSVHWGD+ G TGFSIGAA+K   LSLVIGPGAGYNL S
Sbjct: 531 LSGLIHQYGKERKSVHWGDKGGKTGFSIGAARKVNALSLVIGPGAGYNLKS 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540925|ref|XP_002511527.1| nuclear protein zap, putative [Ricinus communis] gi|223550642|gb|EEF52129.1| nuclear protein zap, putative [Ricinus communis]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 306/558 (54%), Positives = 360/558 (64%), Gaps = 83/558 (14%)

Query: 2   RVDENNYQITSDNERRLKLIRDHGGNGA------------GNAPFH-----NTNGFNSFE 44
           RVDEN   I+ DNERRLKL+R+HGG  +               P H     N N FN  +
Sbjct: 96  RVDENISLISLDNERRLKLVREHGGASSDMNIRHQFEYSQNREPAHADHSLNLNQFN--D 153

Query: 45  NRVDYNSDWQNYGPNNQPPPSIPPLPPPQQGYDNF-----NVQGGYLPP----------- 88
           + +   S + +   ++QPPP          G  N+     N QGG LPP           
Sbjct: 154 SIMSAKSQYFHMNNHHQPPP---------YGLSNYYQSDMNDQGGCLPPHENRVVGDQHQ 204

Query: 89  -----------------LPTSPPPPMPVEPPLPSPAPPNTSLFPVHATVPSSYPPITRVS 131
                            +P  PP      PP P P    TSLFPV         PI   S
Sbjct: 205 HPTLPPLPPLPASPPPPVPLEPPLHPSPPPPPPPPPQQQTSLFPV---------PI---S 252

Query: 132 SELISEESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGL 191
           S L +   +T P      S  F L + S DKP V++A  L KQP+RATRP+H  IILRGL
Sbjct: 253 SSLTNSYLQTKP------STAF-LSEFSSDKPMVIDAFRLFKQPYRATRPEHIVIILRGL 305

Query: 192 PGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTK 251
           PGSGKSY+AKM+RDLEVENGG APRIHSMDDYF+TEVEK+E++D SKSSG +R KKP  K
Sbjct: 306 PGSGKSYLAKMIRDLEVENGGTAPRIHSMDDYFITEVEKIEENDASKSSGFVRGKKPTVK 365

Query: 252 MVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYE 311
            VMEYCYEPEMEEAYR SMLKAF +TL+EG FT+VIVDDRNLRVADFAQFWA AKRSGYE
Sbjct: 366 KVMEYCYEPEMEEAYRDSMLKAFKKTLEEGLFTLVIVDDRNLRVADFAQFWAIAKRSGYE 425

Query: 312 VYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGI 371
           VYI EATYKDPAGCAARNVHGFTLD+I+ MAGQWEEAPTLYLQLDIK+LFHGDDLKESGI
Sbjct: 426 VYISEATYKDPAGCAARNVHGFTLDEIKSMAGQWEEAPTLYLQLDIKSLFHGDDLKESGI 485

Query: 372 KEVEMDMDEDS--DGLLAQQEKETNSIAVSITGEDPPADFPRNEKRWDAEGDRPAEVVKD 429
           +E++MD ++ +  D     QE++   +  S   +D P       KRWDAE D P   +K+
Sbjct: 486 QEIDMDTEDGTSDDNSSGSQERKAEKMRASAFEDDAPQVHAEGRKRWDAEKDHPEGGMKE 545

Query: 430 LGSSKWSNDLNEDDDETSGVVKGNSNALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKK 489
           L  SKWS+DL+EDD + S   K + +ALSGL Q Y K+GKS+ W DQVG+TGFSIGAAKK
Sbjct: 546 LLKSKWSHDLDEDDADRSAGAKSDVSALSGLIQAYGKQGKSLRWSDQVGNTGFSIGAAKK 605

Query: 490 SKMLSLVIGPGAGYNLVS 507
           +   SLVIGPGAGYNL S
Sbjct: 606 TSK-SLVIGPGAGYNLKS 622

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512459|ref|XP_003524936.1| PREDICTED: uncharacterized protein LOC100775851 [Glycine max]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 310/545 (56%), Positives = 362/545 (66%), Gaps = 56/545 (10%)

Query: 2   RVDENNYQITSDNERRLKLIRDHGGNGAGNAPFHNTNGFNSFENRVDYNSDWQNYGPNNQ 61
           R+D+N     SD+ERRLKLIRDHG +    AP  N NGF        +N+ +++    +Q
Sbjct: 45  RIDDNPISF-SDDERRLKLIRDHGSHTY--APHPNHNGFPP-----PHNAQFRSSPHPSQ 96

Query: 62  PPP-------SIPPLPPPQQGYDNFNVQGGYLP---PLPTSPPPPMP------------- 98
             P       ++ P PP Q    NFN +  + P   P P       P             
Sbjct: 97  RVPDGFHHIGAMQPQPPHQGNQHNFNGRVVHYPYPYPAPNDNNMEAPWFFKGQPQPPLPS 156

Query: 99  -------VEPPL--------PSPAPPNTSLFPVHATVPSSYPPITRVSSELISEESRTLP 143
                  +EP +        P   PP  SLFPV    P  +P            E     
Sbjct: 157 SPPPPLPMEPSMNQLKTYFSPPKKPP--SLFPV----PEPHPMPQPYYPTAFPSEREPSK 210

Query: 144 MQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKML 203
            QY G+S  F + QL+ ++PKV++A  L + PHRA+RPDHF IILRGLPGSGKSY+AKML
Sbjct: 211 QQYLGDSQSFAINQLAAERPKVIDASRLFRHPHRASRPDHFVIILRGLPGSGKSYLAKML 270

Query: 204 RDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME 263
           RDLEVENGGDAPRIHSMDDYFMTEVEKVEDS+ SKSS S RSKK VTK VMEY YEPEME
Sbjct: 271 RDLEVENGGDAPRIHSMDDYFMTEVEKVEDSEASKSSSSGRSKKLVTKKVMEYFYEPEME 330

Query: 264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPA 323
           EAYRSSMLKAF +T++EG FT +IVDDRNLRVADF+QFWATAKRSGYEVYILEATYKDP 
Sbjct: 331 EAYRSSMLKAFKKTVEEGVFTFIIVDDRNLRVADFSQFWATAKRSGYEVYILEATYKDPV 390

Query: 324 GCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDED-S 382
           GCAARNVHGFT +DIE+M+ QWEEAP+LYLQLD+K+LFHGDDLKES I+EV+MDM++D  
Sbjct: 391 GCAARNVHGFTQEDIEKMSKQWEEAPSLYLQLDVKSLFHGDDLKESRIQEVDMDMEDDLG 450

Query: 383 DGLLAQQEKETNSIAVSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSSKWSNDLNED 442
           D LL  Q KE + +     GED  A F +  K WDAE + P E V++LG SKWS D  ED
Sbjct: 451 DALLPVQGKEADKVVDPPFGED--ASFLKAGKNWDAEEEHPTE-VRELGKSKWSEDYGED 507

Query: 443 DDETSGVVKGNSNALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAG 502
           D + +  +KGN NALSGL   Y KE KSVHWGDQ G TGFSIGAAKK   LSLVIGPGAG
Sbjct: 508 DIDQTEGMKGNINALSGLIHHYGKERKSVHWGDQGGKTGFSIGAAKKVNALSLVIGPGAG 567

Query: 503 YNLVS 507
           YNL S
Sbjct: 568 YNLKS 572

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734016|emb|CBI15263.3| unnamed protein product [Vitis vinifera]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 311/556 (55%), Positives = 366/556 (65%), Gaps = 62/556 (11%)

Query: 1   MRVDE-------NNY-----QITSDNERRLKLIRDHGGNGAGNAPFHNTNGFNSFENRVD 48
           MR DE       N+Y     ++ S++ERRLKLIRDHG  GA + P+       +FE+ V 
Sbjct: 101 MRFDETASGSFSNDYHLNPTRVMSEDERRLKLIRDHG--GASSGPY-------TFEHPVK 151

Query: 49  YNSDWQNYGPNNQPPPSIPPLPPPQQGYDNF--------------NVQGGYLPPLPTS-- 92
              D+Q++   +    S     P Q+G                  + QGGYLP    S  
Sbjct: 152 QKQDFQSHVQLSDVRQSFEVRFPSQEGNQGTVLHQNSPLGAQYGSHRQGGYLPIHTGSNI 211

Query: 93  ---------PPPPMPVEPPLPSPAPPNTSLFPVHATVPSSYPPITRVSSEL------ISE 137
                          V+PPLP+  PP   + P      S   P     S L       +E
Sbjct: 212 VSEGLSQMQASRSFHVQPPLPASPPPPLPVDPPVPGANSLSQPYFHNKSHLHASTGFATE 271

Query: 138 ESR----TLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPG 193
           E +    T   QY  E   + ++  S +KP  ++A HL KQPHR  RPDH  IILRGLPG
Sbjct: 272 EPQDIRGTSSKQYLAEGQPYLIKHPSSEKPNSIDASHLFKQPHRVGRPDHVVIILRGLPG 331

Query: 194 SGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMV 253
           SGKSY+AKMLRDLEVE+GGDAPRI+SMDDYFMTEVEKVE+S+  KS  S R KKP+ K V
Sbjct: 332 SGKSYLAKMLRDLEVESGGDAPRIYSMDDYFMTEVEKVEESESMKSF-SARGKKPIVKKV 390

Query: 254 MEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVY 313
           MEYCYEPEMEEAYR+SMLKAF +TL+EG FT +IVDDRNLRVADFAQFWATAKRSGYEVY
Sbjct: 391 MEYCYEPEMEEAYRASMLKAFKKTLEEGVFTFIIVDDRNLRVADFAQFWATAKRSGYEVY 450

Query: 314 ILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKE 373
           +LEA+YKDPAGCAARNVHGFT DDI+RMAGQWEEAP++YLQLDIK+LF GDDLKESGI+E
Sbjct: 451 LLEASYKDPAGCAARNVHGFTQDDIQRMAGQWEEAPSMYLQLDIKSLFQGDDLKESGIQE 510

Query: 374 VEMDM-DEDSD-GLLAQQEKETNSIAVSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLG 431
           V+MD  D D D GL   QE+++  +A     +  P    ++ KRWDAEGD PAE VK+LG
Sbjct: 511 VDMDTEDGDCDGGLSGSQEEKSEKVAAPPVEDYAPDGSSKDGKRWDAEGDHPAE-VKELG 569

Query: 432 SSKWSNDLNEDDDETSGVVKGNSNALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSK 491
           SSKWSNDL+EDD E S   K N NALSGL Q Y K GKSVHWGDQ G+TGFSIG AKK+ 
Sbjct: 570 SSKWSNDLDEDDTEKSRGPKENLNALSGLIQAYSKGGKSVHWGDQAGNTGFSIGTAKKAN 629

Query: 492 MLSLVIGPGAGYNLVS 507
             SLVIGPGAGYNL S
Sbjct: 630 --SLVIGPGAGYNLKS 643

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491338|ref|XP_002267724.2| PREDICTED: uncharacterized protein LOC100265726, partial [Vitis vinifera]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/434 (64%), Positives = 317/434 (73%), Gaps = 33/434 (7%)

Query: 96  PMPVEPPLPSPAPPNTSLFPVHATVPSSYPPI----------------TRVSSELISEES 139
           PM   P  P PA    SL    A  PSSYPP+                   S+   +EE 
Sbjct: 524 PMKSSPLFPVPA---GSL----AMAPSSYPPVPGANSLSQPYFHNKSHLHASTGFATEEP 576

Query: 140 R----TLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSG 195
           +    T   QY  E   + ++  S +KP  ++A HL KQPHR  RPDH  IILRGLPGSG
Sbjct: 577 QDIRGTSSKQYLAEGQPYLIKHPSSEKPNSIDASHLFKQPHRVGRPDHVVIILRGLPGSG 636

Query: 196 KSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME 255
           KSY+AKMLRDLEVE+GGDAPRI+SMDDYFMTEVEKVE+S+  KS  S R KKP+ K VME
Sbjct: 637 KSYLAKMLRDLEVESGGDAPRIYSMDDYFMTEVEKVEESESMKSF-SARGKKPIVKKVME 695

Query: 256 YCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYIL 315
           YCYEPEMEEAYR+SMLKAF +TL+EG FT +IVDDRNLRVADFAQFWATAKRSGYEVY+L
Sbjct: 696 YCYEPEMEEAYRASMLKAFKKTLEEGVFTFIIVDDRNLRVADFAQFWATAKRSGYEVYLL 755

Query: 316 EATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVE 375
           EA+YKDPAGCAARNVHGFT DDI+RMAGQWEEAP++YLQLDIK+LF GDDLKESGI+EV+
Sbjct: 756 EASYKDPAGCAARNVHGFTQDDIQRMAGQWEEAPSMYLQLDIKSLFQGDDLKESGIQEVD 815

Query: 376 MDM-DEDSD-GLLAQQEKETNSIAVSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSS 433
           MD  D D D GL   QE+++  +A     +  P    ++ KRWDAEGD PAE VK+LGSS
Sbjct: 816 MDTEDGDCDGGLSGSQEEKSEKVAAPPVEDYAPDGSSKDGKRWDAEGDHPAE-VKELGSS 874

Query: 434 KWSNDLNEDDDETSGVVKGNSNALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKML 493
           KWSNDL+EDD E S   K N NALSGL Q Y K GKSVHWGDQ G+TGFSIG AKK+   
Sbjct: 875 KWSNDLDEDDTEKSRGPKENLNALSGLIQAYSKGGKSVHWGDQAGNTGFSIGTAKKAN-- 932

Query: 494 SLVIGPGAGYNLVS 507
           SLVIGPGAGYNL S
Sbjct: 933 SLVIGPGAGYNLKS 946

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469659|ref|XP_004152536.1| PREDICTED: uncharacterized protein LOC101218580 [Cucumis sativus] gi|449516842|ref|XP_004165455.1| PREDICTED: uncharacterized LOC101218580 [Cucumis sativus]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 270/430 (62%), Positives = 314/430 (73%), Gaps = 26/430 (6%)

Query: 99  VEPPLPSPAPPNTSLF--------PVHATVPSSYPPITRVSSELISEESRTL---PMQYP 147
            +PP   P P +TS          P H +    + P+  VSS  + E+S  L     ++ 
Sbjct: 406 AKPPSLFPVPVSTSTITSSAYSSAPEHRSF-HHHKPMPHVSSSPMMEDSLALHPYSKKFA 464

Query: 148 GESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLE 207
            +   F L QL P KPKV++A  L K PHR+TRPDH  +ILRGLPGSGKSY+AKMLRD+E
Sbjct: 465 ADGKPFGLNQLPPQKPKVIDASQLFKPPHRSTRPDHIVVILRGLPGSGKSYLAKMLRDVE 524

Query: 208 VENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYR 267
           VENGGDAPRIHSMDDYFMTEVEKV++ D +KSS S++ KKP+TK VMEYCYEP+MEEAYR
Sbjct: 525 VENGGDAPRIHSMDDYFMTEVEKVDEVD-AKSSNSIKGKKPITKKVMEYCYEPQMEEAYR 583

Query: 268 SSMLKAFTRTLDEGNFTIVIV----------DDRNLRVADFAQFWATAKRSGYEVYILEA 317
           SSMLKAF +TL+EG FT VIV          DDRNLRVADFAQFWA AK SGYEVYILEA
Sbjct: 584 SSMLKAFRKTLEEGIFTFVIVCWWYMCLVLVDDRNLRVADFAQFWAIAKSSGYEVYILEA 643

Query: 318 TYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMD 377
           TYKDPAGCAARNVHGF LDDI++MA QWEEAP LYLQLDIK+L HGDDLKESGI+EV+MD
Sbjct: 644 TYKDPAGCAARNVHGFNLDDIQKMARQWEEAPPLYLQLDIKSLCHGDDLKESGIQEVDMD 703

Query: 378 MDEDSDGLLAQQEKETNSIAVSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSSKWSN 437
           M+++ DG  + QE  +   A+     D   D   +EKRWDAE D   E VK+LG SKWSN
Sbjct: 704 MEDEDDGSPSFQETMSEKTALPSLRHDASED---DEKRWDAEPDHLREEVKELGRSKWSN 760

Query: 438 DLNEDDDETSGVVKGNSNALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVI 497
           DL++DD E +    G+SNALSGL Q Y KEGKSV W DQV +TGFSIGAAKK+  LSLVI
Sbjct: 761 DLDDDDTERTDGRNGHSNALSGLIQAYAKEGKSVSWMDQVRNTGFSIGAAKKANRLSLVI 820

Query: 498 GPGAGYNLVS 507
           GPG GYNL S
Sbjct: 821 GPGPGYNLKS 830

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124150|ref|XP_002330117.1| predicted protein [Populus trichocarpa] gi|222871251|gb|EEF08382.1| predicted protein [Populus trichocarpa]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/399 (64%), Positives = 307/399 (76%), Gaps = 13/399 (3%)

Query: 112 SLFPVHATVPSSYPPITRVSSELISEESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHL 171
           +LFPV     ++ P +   SS  +SEE +    Q  G++ L   ++LSP++P VV+A HL
Sbjct: 208 ALFPVPINSAATNPYLHNNSSGFVSEEWK----QSSGKTFLH--KKLSPERPIVVDASHL 261

Query: 172 LKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKV 231
            K PHRATRP+H  IILRGLPGSGKSY+AK +RDLEVENGG+ PRIHSMDDYFMTEVEKV
Sbjct: 262 FKMPHRATRPNHIVIILRGLPGSGKSYLAKTMRDLEVENGGNVPRIHSMDDYFMTEVEKV 321

Query: 232 EDSDVSKSSGSLRSKKP-VTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDD 290
           ED D SKSS S R KKP V K+VMEYCYEPEMEEAYR S+LKAF +TL+EG FT+VIVDD
Sbjct: 322 EDGDASKSSSSTRGKKPIVKKVVMEYCYEPEMEEAYRESLLKAFKKTLEEGTFTLVIVDD 381

Query: 291 RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPT 350
           RNLRVADFAQFWA AKR+GYEVYI EATYKDP GCAARNVHGFT+D+I+ MA +WEEAP 
Sbjct: 382 RNLRVADFAQFWAIAKRTGYEVYISEATYKDPVGCAARNVHGFTIDEIQTMARRWEEAPL 441

Query: 351 LYLQLDIKTLFHGDDLKESGIKEVEMDMDEDSDGLLA--QQEKETNSIAVSITGEDPPAD 408
           +Y QLDIK+LF GDDLK++GI+EV+MD ++   G  +  Q+ K   +I   I  ED P  
Sbjct: 442 IYTQLDIKSLFCGDDLKKNGIQEVDMDTEDGDFGNPSNLQEGKPEKTIVPPI--EDAPHV 499

Query: 409 FPRNEKRWDAEGDRPAEVVKDLGSSKWSNDLNEDDDETSGVVKGNSNALSGLFQLYVKEG 468
             ++ KRWDAE D P+  +K+LG SKWS+DL+E D + S  ++ N NALSGL Q Y K+ 
Sbjct: 500 PAKDSKRWDAEEDHPSR-LKELGKSKWSDDLDEADTQGSESMRTN-NALSGLVQAYQKQR 557

Query: 469 KSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVS 507
           KSVHW DQVGDTGFSI AAKK+ MLSLVIGPGAGYNL S
Sbjct: 558 KSVHWSDQVGDTGFSIVAAKKANMLSLVIGPGAGYNLKS 596

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188579|ref|NP_001190598.1| ZAP - like protein [Arabidopsis thaliana] gi|332010270|gb|AED97653.1| ZAP - like protein [Arabidopsis thaliana]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/351 (64%), Positives = 268/351 (76%), Gaps = 11/351 (3%)

Query: 157 QLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPR 216
           QL+P + KV++  HLLK PHR+TRPDHF IILRGLPGSGKSY+AK+LRD+EVENGG APR
Sbjct: 250 QLAPTRSKVIDVSHLLKPPHRSTRPDHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPR 309

Query: 217 IHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTR 276
           IHSMDDYFMTEVEKVE+SD S S  S RSK+P+ K VMEYCYEPEMEEAYRSSMLKAF R
Sbjct: 310 IHSMDDYFMTEVEKVEESD-STSLSSGRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKR 368

Query: 277 TLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLD 336
           TL++G F+ VIVDDRNLRVADF QFWATAKRSGYE YILEATYKDP GCAARNVHG T+D
Sbjct: 369 TLEDGAFSFVIVDDRNLRVADFTQFWATAKRSGYEAYILEATYKDPTGCAARNVHGITVD 428

Query: 337 DIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDEDSDGLLAQQEKETNSI 396
            +++MA QWEEAP+LY+QLDIK+    DDLKE+ I+EV+MDM ED  GL   + K  NS 
Sbjct: 429 QVQQMAEQWEEAPSLYMQLDIKSFTRWDDLKENEIQEVDMDM-EDDFGL--PERKSDNST 485

Query: 397 AVSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSSKWSNDLNEDDDETSGVVKGNSNA 456
                G        ++E +WDAE     E VK+L  SKWSN + ED+ E S  ++ NS +
Sbjct: 486 QSEEKGSY------KSESKWDAESGSRTEEVKELSRSKWSN-VEEDETENSQSMRRNSKS 538

Query: 457 LSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVS 507
           L    Q   ++GKSV WGD+ GD GFSIGAA+   M SL+IGPG+GYN+ S
Sbjct: 539 LPKSSQERQRKGKSVWWGDKGGDAGFSIGAARNMNMPSLIIGPGSGYNVKS 589

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188581|ref|NP_001190599.1| ZAP - like protein [Arabidopsis thaliana] gi|10177454|dbj|BAB10845.1| unnamed protein product [Arabidopsis thaliana] gi|332010271|gb|AED97654.1| ZAP - like protein [Arabidopsis thaliana]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/351 (64%), Positives = 269/351 (76%), Gaps = 7/351 (1%)

Query: 157 QLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPR 216
           QL+P + KV++  HLLK PHR+TRPDHF IILRGLPGSGKSY+AK+LRD+EVENGG APR
Sbjct: 250 QLAPTRSKVIDVSHLLKPPHRSTRPDHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPR 309

Query: 217 IHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTR 276
           IHSMDDYFMTEVEKVE+SD S S  S RSK+P+ K VMEYCYEPEMEEAYRSSMLKAF R
Sbjct: 310 IHSMDDYFMTEVEKVEESD-STSLSSGRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKR 368

Query: 277 TLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLD 336
           TL++G F+ VIVDDRNLRVADF QFWATAKRSGYE YILEATYKDP GCAARNVHG T+D
Sbjct: 369 TLEDGAFSFVIVDDRNLRVADFTQFWATAKRSGYEAYILEATYKDPTGCAARNVHGITVD 428

Query: 337 DIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDEDSDGLLAQQEKETNSI 396
            +++MA QWEEAP+LY+QLDIK+    DDLKE+ I+EV+MDM ED  GL   + K  NS 
Sbjct: 429 QVQQMAEQWEEAPSLYMQLDIKSFTRWDDLKENEIQEVDMDM-EDDFGL--PERKSDNST 485

Query: 397 AVSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSSKWSNDLNEDDDETSGVVKGNSNA 456
                G    +   ++E +WDAE     E VK+L  SKWSN + ED+ E S  ++ NS +
Sbjct: 486 QSEEKGATEGSY--KSESKWDAESGSRTEEVKELSRSKWSN-VEEDETENSQSMRRNSKS 542

Query: 457 LSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVS 507
           L    Q   ++GKSV WGD+ GD GFSIGAA+   M SL+IGPG+GYN+ S
Sbjct: 543 LPKSSQERQRKGKSVWWGDKGGDAGFSIGAARNMNMPSLIIGPGSGYNVKS 593

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697732|ref|NP_851250.1| ZAP - like protein [Arabidopsis thaliana] gi|332010268|gb|AED97651.1| ZAP - like protein [Arabidopsis thaliana]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/368 (61%), Positives = 269/368 (73%), Gaps = 24/368 (6%)

Query: 157 QLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPR 216
           QL+P + KV++  HLLK PHR+TRPDHF IILRGLPGSGKSY+AK+LRD+EVENGG APR
Sbjct: 250 QLAPTRSKVIDVSHLLKPPHRSTRPDHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPR 309

Query: 217 IHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTR 276
           IHSMDDYFMTEVEKVE+SD S S  S RSK+P+ K VMEYCYEPEMEEAYRSSMLKAF R
Sbjct: 310 IHSMDDYFMTEVEKVEESD-STSLSSGRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKR 368

Query: 277 TLDEGNFTIVIV-----------------DDRNLRVADFAQFWATAKRSGYEVYILEATY 319
           TL++G F+ VIV                 DDRNLRVADF QFWATAKRSGYE YILEATY
Sbjct: 369 TLEDGAFSFVIVCFLELTVSCWYMSLILVDDRNLRVADFTQFWATAKRSGYEAYILEATY 428

Query: 320 KDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMD 379
           KDP GCAARNVHG T+D +++MA QWEEAP+LY+QLDIK+    DDLKE+ I+EV+MDM 
Sbjct: 429 KDPTGCAARNVHGITVDQVQQMAEQWEEAPSLYMQLDIKSFTRWDDLKENEIQEVDMDM- 487

Query: 380 EDSDGLLAQQEKETNSIAVSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSSKWSNDL 439
           ED  GL   + K  NS      G    +   ++E +WDAE     E VK+L  SKWSN +
Sbjct: 488 EDDFGL--PERKSDNSTQSEEKGATEGSY--KSESKWDAESGSRTEEVKELSRSKWSN-V 542

Query: 440 NEDDDETSGVVKGNSNALSGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGP 499
            ED+ E S  ++ NS +L    Q   ++GKSV WGD+ GD GFSIGAA+   M SL+IGP
Sbjct: 543 EEDETENSQSMRRNSKSLPKSSQERQRKGKSVWWGDKGGDAGFSIGAARNMNMPSLIIGP 602

Query: 500 GAGYNLVS 507
           G+GYN+ S
Sbjct: 603 GSGYNVKS 610

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	535
TAIR|locus:2170728	661	AT5G62760 "AT5G62760" [Arabido	0.714	0.577	0.585	2e-119
ZFIN|ZDB-GENE-030131-2196	1424	ylpm1 "YLP motif containing 1"	0.431	0.162	0.486	1.5e-53
UNIPROTKB|H0YI23	466	YLPM1 "YLP motif-containing pr	0.471	0.540	0.446	3.1e-51
UNIPROTKB|F8VU51	1440	YLPM1 "YLP motif-containing pr	0.442	0.164	0.470	2.5e-50
UNIPROTKB|H0YIQ2	1595	YLPM1 "YLP motif-containing pr	0.442	0.148	0.470	3.1e-50
UNIPROTKB|F1S2T2	1954	F1S2T2 "Uncharacterized protei	0.459	0.125	0.445	3.4e-50
UNIPROTKB|E2RRU5	1768	YLPM1 "Uncharacterized protein	0.442	0.134	0.470	3.7e-50
UNIPROTKB|P49750	1951	YLPM1 "YLP motif-containing pr	0.442	0.121	0.470	4.3e-50
UNIPROTKB|E2RRU4	1954	YLPM1 "Uncharacterized protein	0.442	0.121	0.470	4.3e-50
UNIPROTKB|J9P5A5	2149	YLPM1 "Uncharacterized protein	0.442	0.110	0.470	5e-50

TAIR|locus:2170728 AT5G62760 "AT5G62760" [Arabidopsis thaliana (taxid:3702)]

 Score = 1125 (401.1 bits), Expect = 2.0e-119, Sum P(2) = 2.0e-119
 Identities = 240/410 (58%), Positives = 289/410 (70%)

Query:   115 PVHATVPSSYPPITRVSSELISEESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQ 174
             P+ ++ PSS  P+T  SS  I   S + P Q P  S      QL+P + KV++  HLLK 
Sbjct:   212 PLPSSHPSSLFPVTTNSSPTIPPSS-SYP-QMPNASP--SSAQLAPTRSKVIDVSHLLKP 267

Query:   175 PHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDS 234
             PHR+TRPDHF IILRGLPGSGKSY+AK+LRD+EVENGG APRIHSMDDYFMTEVEKVE+S
Sbjct:   268 PHRSTRPDHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPRIHSMDDYFMTEVEKVEES 327

Query:   235 DVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIV------ 288
             D S S  S RSK+P+ K VMEYCYEPEMEEAYRSSMLKAF RTL++G F+ VIV      
Sbjct:   328 D-STSLSSGRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKRTLEDGAFSFVIVCFLELT 386

Query:   289 -----------DDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDD 337
                        DDRNLRVADF QFWATAKRSGYE YILEATYKDP GCAARNVHG T+D 
Sbjct:   387 VSCWYMSLILVDDRNLRVADFTQFWATAKRSGYEAYILEATYKDPTGCAARNVHGITVDQ 446

Query:   338 IERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMDMDEDSDGLLAQQEKETNSIA 397
             +++MA QWEEAP+LY+QLDIK+    DDLKE+ I+EV+MDM++D  GL   + K  NS  
Sbjct:   447 VQQMAEQWEEAPSLYMQLDIKSFTRWDDLKENEIQEVDMDMEDDF-GL--PERKSDNSTQ 503

Query:   398 VSITGEDPPADFPRNEKRWDAEGDRPAEVVKDLGSSKWSNDLNEDDDETSGVVKGNSNAL 457
                 G    +   ++E +WDAE     E VK+L  SKWSN + ED+ E S  ++ NS +L
Sbjct:   504 SEEKGATEGSY--KSESKWDAESGSRTEEVKELSRSKWSN-VEEDETENSQSMRRNSKSL 560

Query:   458 SGLFQLYVKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVS 507
                 Q   ++GKSV WGD+ GD GFSIGAA+   M SL+IGPG+GYN+ S
Sbjct:   561 PKSSQERQRKGKSVWWGDKGGDAGFSIGAARNMNMPSLIIGPGSGYNVKS 610

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-2196 ylpm1 "YLP motif containing 1" [Danio rerio (taxid:7955)]

 Score = 548 (198.0 bits), Expect = 1.5e-53, Sum P(2) = 1.5e-53
 Identities = 122/251 (48%), Positives = 166/251 (66%)

Query:   138 ESRTLPMQ-YPGESHLFPLRQLSPD---KPKVVNALHLLKQPHRATRPDHFAIILRGLPG 193
             E R+ P +  P  + L P   ++P    KP++ NA  +LK P R++RPD   +I+RGLPG
Sbjct:  1067 ERRSYPDERQPPPTSLPPSAPVAPPVEKKPEIKNAEDILKPPGRSSRPDRIVVIMRGLPG 1126

Query:   194 SGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVE-DSDVSKSSGSLRSKKPVTKM 252
             SGKS++AK++RD EVE GG  PR+  +DDYFMTEVEK+E D D    SG    K+  TK 
Sbjct:  1127 SGKSHVAKLIRDKEVECGGAPPRVLGLDDYFMTEVEKIEKDPD----SG----KRIKTK- 1177

Query:   253 VMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV 312
             V+EY YEPEME+ YRSSMLK F +TLD+G F  +I+D  N +V  F QFW+ AK  G+EV
Sbjct:  1178 VLEYEYEPEMEDTYRSSMLKTFKKTLDDGFFPFIILDAINDKVKYFDQFWSAAKTKGFEV 1237

Query:   313 YILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIK 372
             Y+ E T  D   CA RN+HG TL DI +++G WE AP   ++LDI++L     L+++ I+
Sbjct:  1238 YLAEIT-TDQQTCAKRNIHGRTLKDISKLSGGWESAPPHMVRLDIRSL-----LQDAAIE 1291

Query:   373 EVEMDMDEDSD 383
             +VEM+    SD
Sbjct:  1292 DVEMEDFNPSD 1302

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|H0YI23 YLPM1 "YLP motif-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 120/269 (44%), Positives = 165/269 (61%)

Query:   138 ESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKS 197
             E R +P+  P  SH  P       KP+  N   +LK P R +RP+   +I+RGLPGSGK+
Sbjct:   199 EER-MPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKT 257

Query:   198 YIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYC 257
             ++AK++RD EVE GG APR+ S+DDYF+TEVEK E+ D    SG     K V K VMEY 
Sbjct:   258 HVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEK-EEKD--PDSG-----KKVKKKVMEYE 309

Query:   258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEA 317
             YE EMEE YR+SM K F +TLD+G F  +I+D  N RV  F QFW+ AK  G+EVY+ E 
Sbjct:   310 YEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEM 369

Query:   318 TYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEM- 376
             +  D   C  RN+HG  L +I +MA  WE AP   ++LDI++L     L+++ I+EVEM 
Sbjct:   370 S-ADNQTCGKRNIHGRKLKEINKMADHWETAPRHMMRLDIRSL-----LQDAAIEEVEME 423

Query:   377 DMDEDSDGLLAQQEKETNSIAVSITGEDP 405
             D D + +    +++K+       + G+ P
Sbjct:   424 DFDANIEEQ-KEEKKDAEEEESELVGDRP 451

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F8VU51 YLPM1 "YLP motif-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 536 (193.7 bits), Expect = 2.5e-50, P = 2.5e-50
 Identities = 120/255 (47%), Positives = 161/255 (63%)

Query:   138 ESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKS 197
             E R +P+  P  SH  P       KP+  N   +LK P R +RP+   +I+RGLPGSGK+
Sbjct:  1084 EER-MPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKT 1142

Query:   198 YIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYC 257
             ++AK++RD EVE GG APR+ S+DDYF+TEVEK E+ D    SG     K V K VMEY 
Sbjct:  1143 HVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEK-EEKD--PDSG-----KKVKKKVMEYE 1194

Query:   258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEA 317
             YE EMEE YR+SM K F +TLD+G F  +I+D  N RV  F QFW+ AK  G+EVY+ E 
Sbjct:  1195 YEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEM 1254

Query:   318 TYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMD 377
             +  D   C  RN+HG  L +I +MA  WE AP   ++LDI++L     L+++ I+EVEM 
Sbjct:  1255 S-ADNQTCGKRNIHGRKLKEINKMADHWETAPRHMMRLDIRSL-----LQDAAIEEVEM- 1307

Query:   378 MDEDSDGLLAQQEKE 392
               ED D  + +Q++E
Sbjct:  1308 --EDFDANIEEQKEE 1320

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|H0YIQ2 YLPM1 "YLP motif-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 536 (193.7 bits), Expect = 3.1e-50, P = 3.1e-50
 Identities = 120/255 (47%), Positives = 161/255 (63%)

Query:   138 ESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKS 197
             E R +P+  P  SH  P       KP+  N   +LK P R +RP+   +I+RGLPGSGK+
Sbjct:  1343 EER-MPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKT 1401

Query:   198 YIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYC 257
             ++AK++RD EVE GG APR+ S+DDYF+TEVEK E+ D    SG     K V K VMEY 
Sbjct:  1402 HVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEK-EEKD--PDSG-----KKVKKKVMEYE 1453

Query:   258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEA 317
             YE EMEE YR+SM K F +TLD+G F  +I+D  N RV  F QFW+ AK  G+EVY+ E 
Sbjct:  1454 YEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEM 1513

Query:   318 TYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMD 377
             +  D   C  RN+HG  L +I +MA  WE AP   ++LDI++L     L+++ I+EVEM 
Sbjct:  1514 S-ADNQTCGKRNIHGRKLKEINKMADHWETAPRHMMRLDIRSL-----LQDAAIEEVEM- 1566

Query:   378 MDEDSDGLLAQQEKE 392
               ED D  + +Q++E
Sbjct:  1567 --EDFDANIEEQKEE 1579

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1S2T2 F1S2T2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 530 (191.6 bits), Expect = 3.4e-50, Sum P(2) = 3.4e-50
 Identities = 114/256 (44%), Positives = 159/256 (62%)

Query:   138 ESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKS 197
             E R +P+  P  SH  P       KP+  N   +LK P R +RP+   +I+RGLPGSGK+
Sbjct:  1598 EER-MPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKT 1656

Query:   198 YIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYC 257
             ++AK++RD EVE GG APR+ S+DDYF+TEVEK E+ D    SG     K V K VMEY 
Sbjct:  1657 HVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEK-EEKD--PDSG-----KKVKKKVMEYE 1708

Query:   258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEA 317
             YE EMEE YR+SM K F +TLD+G F  +I+D  N RV  F QFW+ AK  G+EVY+ E 
Sbjct:  1709 YEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEM 1768

Query:   318 TYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMD 377
             +  D   C  RN+HG  L +I +MA  WE AP   ++LDI++L     ++E  +++ + +
Sbjct:  1769 S-ADNQTCGKRNIHGRKLKEINKMADHWEAAPRHMMRLDIRSLLQDAAIEEVEMEDFDAN 1827

Query:   378 MDEDSDGLLAQQEKET 393
             ++E  D     +E+E+
Sbjct:  1828 IEEQKDEKKDAEEEES 1843

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2RRU5 YLPM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 536 (193.7 bits), Expect = 3.7e-50, P = 3.7e-50
 Identities = 120/255 (47%), Positives = 161/255 (63%)

Query:   138 ESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKS 197
             E R +P+  P  SH  P       KP+  N   +LK P R +RP+   +I+RGLPGSGK+
Sbjct:  1418 EER-MPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKT 1476

Query:   198 YIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYC 257
             ++AK++RD EVE GG APR+ S+DDYF+TEVEK E+ D    SG     K V K VMEY 
Sbjct:  1477 HVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEK-EEKD--PDSG-----KKVKKKVMEYE 1528

Query:   258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEA 317
             YE EMEE YR+SM K F +TLD+G F  +I+D  N RV  F QFW+ AK  G+EVY+ E 
Sbjct:  1529 YEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEM 1588

Query:   318 TYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMD 377
             +  D   C  RN+HG  L +I +MA  WE AP   ++LDI++L     L+++ I+EVEM 
Sbjct:  1589 S-ADNQTCGKRNIHGRKLKEINKMADHWETAPRHMMRLDIRSL-----LQDAAIEEVEM- 1641

Query:   378 MDEDSDGLLAQQEKE 392
               ED D  + +Q++E
Sbjct:  1642 --EDFDANIEEQKEE 1654

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P49750 YLPM1 "YLP motif-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 536 (193.7 bits), Expect = 4.3e-50, P = 4.3e-50
 Identities = 120/255 (47%), Positives = 161/255 (63%)

Query:   138 ESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKS 197
             E R +P+  P  SH  P       KP+  N   +LK P R +RP+   +I+RGLPGSGK+
Sbjct:  1595 EER-MPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKT 1653

Query:   198 YIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYC 257
             ++AK++RD EVE GG APR+ S+DDYF+TEVEK E+ D    SG     K V K VMEY 
Sbjct:  1654 HVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEK-EEKD--PDSG-----KKVKKKVMEYE 1705

Query:   258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEA 317
             YE EMEE YR+SM K F +TLD+G F  +I+D  N RV  F QFW+ AK  G+EVY+ E 
Sbjct:  1706 YEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEM 1765

Query:   318 TYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMD 377
             +  D   C  RN+HG  L +I +MA  WE AP   ++LDI++L     L+++ I+EVEM 
Sbjct:  1766 S-ADNQTCGKRNIHGRKLKEINKMADHWETAPRHMMRLDIRSL-----LQDAAIEEVEM- 1818

Query:   378 MDEDSDGLLAQQEKE 392
               ED D  + +Q++E
Sbjct:  1819 --EDFDANIEEQKEE 1831

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

GO:0032204 "regulation of telomere maintenance" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2RRU4 YLPM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 536 (193.7 bits), Expect = 4.3e-50, P = 4.3e-50
 Identities = 120/255 (47%), Positives = 161/255 (63%)

Query:   138 ESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKS 197
             E R +P+  P  SH  P       KP+  N   +LK P R +RP+   +I+RGLPGSGK+
Sbjct:  1598 EER-MPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKT 1656

Query:   198 YIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYC 257
             ++AK++RD EVE GG APR+ S+DDYF+TEVEK E+ D    SG     K V K VMEY 
Sbjct:  1657 HVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEK-EEKD--PDSG-----KKVKKKVMEYE 1708

Query:   258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEA 317
             YE EMEE YR+SM K F +TLD+G F  +I+D  N RV  F QFW+ AK  G+EVY+ E 
Sbjct:  1709 YEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEM 1768

Query:   318 TYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMD 377
             +  D   C  RN+HG  L +I +MA  WE AP   ++LDI++L     L+++ I+EVEM 
Sbjct:  1769 S-ADNQTCGKRNIHGRKLKEINKMADHWETAPRHMMRLDIRSL-----LQDAAIEEVEM- 1821

Query:   378 MDEDSDGLLAQQEKE 392
               ED D  + +Q++E
Sbjct:  1822 --EDFDANIEEQKEE 1834

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|J9P5A5 YLPM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 536 (193.7 bits), Expect = 5.0e-50, P = 5.0e-50
 Identities = 120/255 (47%), Positives = 161/255 (63%)

Query:   138 ESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPHRATRPDHFAIILRGLPGSGKS 197
             E R +P+  P  SH  P       KP+  N   +LK P R +RP+   +I+RGLPGSGK+
Sbjct:  1793 EER-MPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKT 1851

Query:   198 YIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYC 257
             ++AK++RD EVE GG APR+ S+DDYF+TEVEK E+ D    SG     K V K VMEY 
Sbjct:  1852 HVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEK-EEKD--PDSG-----KKVKKKVMEYE 1903

Query:   258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEA 317
             YE EMEE YR+SM K F +TLD+G F  +I+D  N RV  F QFW+ AK  G+EVY+ E 
Sbjct:  1904 YEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEM 1963

Query:   318 TYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDIKTLFHGDDLKESGIKEVEMD 377
             +  D   C  RN+HG  L +I +MA  WE AP   ++LDI++L     L+++ I+EVEM 
Sbjct:  1964 S-ADNQTCGKRNIHGRKLKEINKMADHWETAPRHMMRLDIRSL-----LQDAAIEEVEM- 2016

Query:   378 MDEDSDGLLAQQEKE 392
               ED D  + +Q++E
Sbjct:  2017 --EDFDANIEEQKEE 2029

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000100001 SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (517 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	535
pfam13671	143	pfam13671, AAA_33, AAA domain	1e-05
pfam08433	266	pfam08433, KTI12, Chromatin associated protein KTI	8e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
pfam06003	264	pfam06003, SMN, Survival motor neuron protein (SMN	0.003
pfam13207	114	pfam13207, AAA_17, AAA domain	0.003
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.004

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 40/173 (23%), Positives = 57/173 (32%), Gaps = 43/173 (24%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRS 245
           I++ GLPGSGKS  A+ L          A  + S  D     +      D+S        
Sbjct: 2   ILMVGLPGSGKSTFARRLLREL-----GAVVLSS--DTLRKRLRGDGPPDIS-------- 46

Query: 246 KKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATA 305
                       Y           +L+     L  G    VIVD  NL   + A+    A
Sbjct: 47  ------------YYARASGRVYQRLLELAREALRAGRP--VIVDATNLSREERARLIDLA 92

Query: 306 KRSGYEVYI--LEATYKDPAGCAARNV-------HGFTLDD--IERMAGQWEE 347
           +R G  V I  LEA          RN            + +  ++RM  ++E 
Sbjct: 93  RRYGAPVRIVYLEA---PEEVLRERNAQRERSGGDPSDVPEAVLDRMLARFEP 142

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|219839 pfam08433, KTI12, Chromatin associated protein KTI12

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 30/107 (28%), Positives = 36/107 (33%), Gaps = 30/107 (28%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRS 245
           IIL GLP SGKS  AK L     E G D   + S +                        
Sbjct: 2   IILTGLPSSGKSTRAKELAKYLEEKGYDV-IVISDESL-------------------GIE 41

Query: 246 KKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRN 292
                          + E+  R S+  A  R L +   TIVIVD  N
Sbjct: 42  SDDYKDS--------KKEKFLRGSLRSAVKRDLSKN--TIVIVDSLN 78

This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity. Length = 266

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 55  NYGPNNQPPPSIPPLPPPQQGYDNFNVQGGYLPPLPTSPPPPMPVEPPLPSPAPPNTSLF 114
              P++    S+PP P   Q            P  P+ PP P    PP     PP ++  
Sbjct: 201 PEDPSSPSDSSLPPAPSSFQSDTPPPS--PESPTNPSPPPGPAAPPPPPVQQVPPLSTAK 258

Query: 115 PVHATVPSSYPPIT 128
           P   +  ++  PI 
Sbjct: 259 PTPPSASATPAPIG 272

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 13/65 (20%)

Query: 62  PPPSIPPLPPPQQGYDNFNVQGGYLPPLPTSPPPPMPVEPPLPSPAPPNTSLFPVHATVP 121
           PPP  P                   P     PPPP P  PP P P  PN +  P  A   
Sbjct: 43  PPPPPPSTAAAA-------------PAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPN 89

Query: 122 SSYPP 126
           +  PP
Sbjct: 90  APPPP 94

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 4/92 (4%)

Query: 54  QNYGPNNQPPPSIPPLPPPQQGYDNFNVQGGYLPPLPTSPPPPMPVEPPLPSPAPP-NTS 112
           Q  G + Q PP  PP PP QQ            PP     P P   +       PP    
Sbjct: 247 QFPGLSQQMPPP-PPQPPQQQQQPPQPQA--QPPPQNQPTPHPGLPQGQNAPLPPPQQPQ 303

Query: 113 LFPVHATVPSSYPPITRVSSELISEESRTLPM 144
           L P+                 +   + +   +
Sbjct: 304 LLPLVQQPQGQQRGPQFREQLVQLSQQQREAL 335

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN)

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 40  FNSFENRVDYNSDWQNYGPNNQPPPSIPPLPPPQQGYDNFNVQGGYLPPLPTSPPPPMPV 99
            +S E R   N       P N   P  PP PPP  G       G   PP  +  PPP P+
Sbjct: 149 SHSHEVRSKSNFPMGPPSPWNPRFPPGPPPPPPGFGRHGEKPSG--WPPFLSGWPPPFPL 206

Query: 100 EPPLPSPAPPNTSLFP 115
            PP+  P PP +  F 
Sbjct: 207 GPPMIPPPPPMSPDFG 222

This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs. Length = 264

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDV 236
           I++ G PGSGKS +AK L     E  G  P I  +DD    E     D   
Sbjct: 2   ILITGPPGSGKSTLAKKL----AEKLG-IPVIS-LDDLLREEGLAELDDGE 46

Length = 114

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 11/70 (15%)

Query: 58  PNNQPPPSIPPLPPPQQGYDNFNVQGGYLPPLPTSPPPPMPVEPPLPSPAPPNTSLFPVH 117
           P   PP  +  + PP                 P SPP   P      S  PP  +  P  
Sbjct: 142 PQPPPPAPVVMMQPPPPH-----------AMPPASPPAAQPAPSAPASSPPPTPASPPPA 190

Query: 118 ATVPSSYPPI 127
               SS+PP+
Sbjct: 191 KAPKSSHPPL 200

Length = 274

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	535
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.82
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.77
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.77
COG4639	168	Predicted kinase [General function prediction only	99.75
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	99.75
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.72
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.68
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.67
PHA02530	300	pseT polynucleotide kinase; Provisional	99.63
PRK06762	166	hypothetical protein; Provisional	99.56
KOG3062	281	consensus RNA polymerase II elongator associated p	99.52
COG0645	170	Predicted kinase [General function prediction only	99.47
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.47
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.46
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.44
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.43
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.4
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.37
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.24
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.23
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.22
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.21
PRK00889	175	adenylylsulfate kinase; Provisional	99.16
KOG4622	291	consensus Predicted nucleotide kinase [General fun	99.16
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.14
PRK03846	198	adenylylsulfate kinase; Provisional	99.08
PRK14527	191	adenylate kinase; Provisional	99.03
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.01
PRK05541	176	adenylylsulfate kinase; Provisional	99.0
PRK14531	183	adenylate kinase; Provisional	98.99
PRK14532	188	adenylate kinase; Provisional	98.96
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.94
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	98.92
KOG0234	438	consensus Fructose-6-phosphate 2-kinase/fructose-2	98.92
PRK09825	176	idnK D-gluconate kinase; Provisional	98.83
KOG2400	82	consensus Nuclear protein ZAP [Defense mechanisms]	98.81
PRK11545	163	gntK gluconate kinase 1; Provisional	98.78
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.78
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.72
PRK06696	223	uridine kinase; Validated	98.72
PRK07667	193	uridine kinase; Provisional	98.69
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.68
PRK06547	172	hypothetical protein; Provisional	98.68
PRK00279	215	adk adenylate kinase; Reviewed	98.67
PLN02200	234	adenylate kinase family protein	98.64
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.63
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.57
PRK01184	184	hypothetical protein; Provisional	98.56
PRK00131	175	aroK shikimate kinase; Reviewed	98.52
PRK02496	184	adk adenylate kinase; Provisional	98.52
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.51
PTZ00301	210	uridine kinase; Provisional	98.5
PRK13946	184	shikimate kinase; Provisional	98.49
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.46
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.46
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	98.43
PRK07261	171	topology modulation protein; Provisional	98.43
PRK08233	182	hypothetical protein; Provisional	98.41
PRK14528	186	adenylate kinase; Provisional	98.4
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.39
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.39
PRK06217	183	hypothetical protein; Validated	98.39
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.38
PRK00698	205	tmk thymidylate kinase; Validated	98.33
PRK14737	186	gmk guanylate kinase; Provisional	98.33
PRK05480	209	uridine/cytidine kinase; Provisional	98.32
PRK00625	173	shikimate kinase; Provisional	98.3
PRK08118	167	topology modulation protein; Reviewed	98.29
PRK08356	195	hypothetical protein; Provisional	98.29
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.29
PRK12338	319	hypothetical protein; Provisional	98.28
PRK14529	223	adenylate kinase; Provisional	98.27
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.26
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.25
PRK05057	172	aroK shikimate kinase I; Reviewed	98.25
PLN02674	244	adenylate kinase	98.24
PRK13808	333	adenylate kinase; Provisional	98.24
PRK13948	182	shikimate kinase; Provisional	98.23
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.23
PTZ00088	229	adenylate kinase 1; Provisional	98.22
PRK13947	171	shikimate kinase; Provisional	98.22
PRK14530	215	adenylate kinase; Provisional	98.2
PRK13949	169	shikimate kinase; Provisional	98.19
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.18
PRK03839	180	putative kinase; Provisional	98.18
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.18
PRK04040	188	adenylate kinase; Provisional	98.18
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.17
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.17
PRK00300	205	gmk guanylate kinase; Provisional	98.16
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.14
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.14
PLN02348	395	phosphoribulokinase	98.12
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.12
PRK04182	180	cytidylate kinase; Provisional	98.08
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.07
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.06
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.05
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.05
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.04
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.03
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.03
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.02
PRK13973	213	thymidylate kinase; Provisional	98.0
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.0
PRK14738	206	gmk guanylate kinase; Provisional	97.99
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.97
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	97.97
PRK14526	211	adenylate kinase; Provisional	97.96
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.95
PRK03731	171	aroL shikimate kinase II; Reviewed	97.94
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.94
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	97.91
PLN02459	261	probable adenylate kinase	97.9
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	97.89
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.84
PRK14730	195	coaE dephospho-CoA kinase; Provisional	97.81
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	97.81
PLN02924	220	thymidylate kinase	97.8
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	97.77
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.76
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	97.76
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	97.72
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	97.7
PRK07429	327	phosphoribulokinase; Provisional	97.69
PRK10867	433	signal recognition particle protein; Provisional	97.69
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.67
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.67
PRK13975	196	thymidylate kinase; Provisional	97.63
PLN02772	398	guanylate kinase	97.63
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.63
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.63
PRK13974	212	thymidylate kinase; Provisional	97.62
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	97.61
PRK13976	209	thymidylate kinase; Provisional	97.61
PRK05439	311	pantothenate kinase; Provisional	97.59
PF00004	132	AAA: ATPase family associated with various cellula	97.58
TIGR00959	428	ffh signal recognition particle protein. This mode	97.58
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.57
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.54
PLN02199	303	shikimate kinase	97.54
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.52
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.52
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	97.51
PLN02318	656	phosphoribulokinase/uridine kinase	97.49
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.48
KOG3308	225	consensus Uncharacterized protein of the uridine k	97.47
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.47
PRK14733	204	coaE dephospho-CoA kinase; Provisional	97.46
PRK04296	190	thymidine kinase; Provisional	97.44
PRK14734	200	coaE dephospho-CoA kinase; Provisional	97.44
PRK14732	196	coaE dephospho-CoA kinase; Provisional	97.42
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.42
PLN02842	505	nucleotide kinase	97.37
PRK14974	336	cell division protein FtsY; Provisional	97.34
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.33
PRK06761	282	hypothetical protein; Provisional	97.31
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.3
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.3
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.3
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	97.24
PRK15453	290	phosphoribulokinase; Provisional	97.23
PLN02422	232	dephospho-CoA kinase	97.23
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.23
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.22
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.2
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	97.19
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.18
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.12
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.1
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.1
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.08
PRK07933	213	thymidylate kinase; Validated	97.07
PHA00729	226	NTP-binding motif containing protein	97.07
PLN02165	334	adenylate isopentenyltransferase	97.05
PF05729	166	NACHT: NACHT domain	97.05
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	97.05
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.05
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.03
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.02
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.01
PF13173	128	AAA_14: AAA domain	97.0
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.99
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.97
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	96.96
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.95
PRK06067	234	flagellar accessory protein FlaH; Validated	96.95
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	96.95
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	96.95
CHL00181	287	cbbX CbbX; Provisional	96.93
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.93
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.93
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.91
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	96.91
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.9
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.89
PRK06893	229	DNA replication initiation factor; Validated	96.88
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	96.87
PLN02796	347	D-glycerate 3-kinase	96.87
PRK10416	318	signal recognition particle-docking protein FtsY;	96.86
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.84
KOG0780	483	consensus Signal recognition particle, subunit Srp	96.83
PHA03132	580	thymidine kinase; Provisional	96.82
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.81
PLN03046	460	D-glycerate 3-kinase; Provisional	96.8
PRK08084	235	DNA replication initiation factor; Provisional	96.79
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.79
PTZ00451	244	dephospho-CoA kinase; Provisional	96.78
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	96.78
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.78
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.77
smart00382	148	AAA ATPases associated with a variety of cellular	96.75
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.73
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.73
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.72
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.72
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.7
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.7
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.68
PRK04328	249	hypothetical protein; Provisional	96.67
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	96.67
PRK12377	248	putative replication protein; Provisional	96.66
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.66
PLN02840	421	tRNA dimethylallyltransferase	96.65
COG1660	286	Predicted P-loop-containing kinase [General functi	96.64
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.63
PRK05973	237	replicative DNA helicase; Provisional	96.62
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.61
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	96.6
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	96.56
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.56
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.56
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.55
COG4240	300	Predicted kinase [General function prediction only	96.54
PRK09354	349	recA recombinase A; Provisional	96.54
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.49
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	96.47
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.47
PRK08116	268	hypothetical protein; Validated	96.45
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	96.45
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.44
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	96.42
PRK05642	234	DNA replication initiation factor; Validated	96.41
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	96.4
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	96.4
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.39
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.39
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.38
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	96.35
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.3
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.29
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.27
PRK08181	269	transposase; Validated	96.26
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.26
PRK13342	413	recombination factor protein RarA; Reviewed	96.26
PRK06921	266	hypothetical protein; Provisional	96.25
PRK08006	471	replicative DNA helicase; Provisional	96.24
TIGR00665	434	DnaB replicative DNA helicase. This model describe	96.24
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.24
PRK11823	446	DNA repair protein RadA; Provisional	96.23
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.23
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.23
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.22
PRK13695	174	putative NTPase; Provisional	96.21
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.21
PRK00023	225	cmk cytidylate kinase; Provisional	96.2
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	96.18
KOG1533	290	consensus Predicted GTPase [General function predi	96.17
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	96.17
PRK00149	450	dnaA chromosomal replication initiation protein; R	96.15
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	96.14
PRK06526	254	transposase; Provisional	96.14
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	96.12
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.12
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.12
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.11
PRK04195	482	replication factor C large subunit; Provisional	96.11
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.09
PRK05636	505	replicative DNA helicase; Provisional	96.09
PRK08939	306	primosomal protein DnaI; Reviewed	96.09
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	96.09
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	96.08
PTZ00035	337	Rad51 protein; Provisional	96.07
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.06
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.06
PRK08727	233	hypothetical protein; Validated	96.04
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	96.03
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.03
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	96.02
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.01
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.0
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	95.96
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	95.96
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	95.96
PRK09087	226	hypothetical protein; Validated	95.96
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.95
PRK03992	389	proteasome-activating nucleotidase; Provisional	95.95
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	95.95
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.95
PRK09302	509	circadian clock protein KaiC; Reviewed	95.94
PLN02748	468	tRNA dimethylallyltransferase	95.92
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	95.91
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	95.9
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.9
PRK06835	329	DNA replication protein DnaC; Validated	95.87
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.87
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	95.86
PHA02544	316	44 clamp loader, small subunit; Provisional	95.86
PRK04301	317	radA DNA repair and recombination protein RadA; Va	95.84
cd03216	163	ABC_Carb_Monos_I This family represents the domain	95.82
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	95.82
PRK09183	259	transposase/IS protein; Provisional	95.81
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	95.81
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	95.78
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	95.78
COG1855	604	ATPase (PilT family) [General function prediction	95.78
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	95.77
PF13245	76	AAA_19: Part of AAA domain	95.76
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	95.76
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.75
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	95.75
COG1484	254	DnaC DNA replication protein [DNA replication, rec	95.74
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	95.73
KOG1969	877	consensus DNA replication checkpoint protein CHL12	95.72
PRK13768	253	GTPase; Provisional	95.69
PRK00089	292	era GTPase Era; Reviewed	95.67
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	95.66
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	95.66
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	95.65
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	95.63
PRK09519	790	recA DNA recombination protein RecA; Reviewed	95.63
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	95.58
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	95.58
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.57
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.57
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	95.55
CHL00195	489	ycf46 Ycf46; Provisional	95.55
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.55
PRK08099	399	bifunctional DNA-binding transcriptional repressor	95.55
PLN03025	319	replication factor C subunit; Provisional	95.54
PRK08760	476	replicative DNA helicase; Provisional	95.51
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	95.5
cd03114	148	ArgK-like The function of this protein family is u	95.49
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	95.46
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.46
PRK05748	448	replicative DNA helicase; Provisional	95.41
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	95.39
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	95.36
PRK08840	464	replicative DNA helicase; Provisional	95.36
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.35
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.35
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	95.35
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	95.34
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	95.31
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	95.31
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	95.3
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	95.3
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	95.28
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.28
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	95.25
cd03116	159	MobB Molybdenum is an essential trace element in t	95.24
PRK07004	460	replicative DNA helicase; Provisional	95.22
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	95.21
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	95.21
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	95.14
PRK09302	509	circadian clock protein KaiC; Reviewed	95.13
PRK05595	444	replicative DNA helicase; Provisional	95.12
PRK06321	472	replicative DNA helicase; Provisional	95.1
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	95.1
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	95.09
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	95.06
cd02034	116	CooC The accessory protein CooC, which contains a	95.04
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	95.03
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	95.03
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	95.02
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.01
PRK08903	227	DnaA regulatory inactivator Hda; Validated	94.99
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	94.97
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	94.97
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	94.95
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	94.92
PF00005	137	ABC_tran: ABC transporter This structure is on hol	94.91
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	94.87
COG3911	183	Predicted ATPase [General function prediction only	94.85
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	94.84
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	94.84
COG3709	192	Uncharacterized component of phosphonate metabolis	94.83
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	94.83
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	94.83
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	94.82
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	94.81
PRK08506	472	replicative DNA helicase; Provisional	94.8
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	94.79
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.79
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	94.77
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	94.75
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	94.72
TIGR00101	199	ureG urease accessory protein UreG. This model rep	94.69
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	94.69
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	94.67
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	94.67
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	94.66
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	94.64
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	94.64
PRK13851	344	type IV secretion system protein VirB11; Provision	94.62
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	94.6
PRK07952	244	DNA replication protein DnaC; Validated	94.6
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	94.58
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	94.58
PRK13886	241	conjugal transfer protein TraL; Provisional	94.56
PRK06620	214	hypothetical protein; Validated	94.56
PRK13833	323	conjugal transfer protein TrbB; Provisional	94.53
PRK06904	472	replicative DNA helicase; Validated	94.53
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	94.52
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	94.52
PRK09165	497	replicative DNA helicase; Provisional	94.52
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	94.51
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	94.51
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	94.49
PRK15494	339	era GTPase Era; Provisional	94.46
PRK12422	445	chromosomal replication initiation protein; Provis	94.45
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	94.43
PRK13764	602	ATPase; Provisional	94.42
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	94.41
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	94.4
PRK06851	367	hypothetical protein; Provisional	94.39
PRK15455	644	PrkA family serine protein kinase; Provisional	94.38
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	94.34
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	94.32
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	94.32
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	94.31
PHA02624	647	large T antigen; Provisional	94.3
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	94.3
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	94.3
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	94.3
PRK07773	886	replicative DNA helicase; Validated	94.29
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	94.28
PRK12608	380	transcription termination factor Rho; Provisional	94.27
CHL00176	638	ftsH cell division protein; Validated	94.27
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	94.26
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	94.25
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	94.24
PRK14087	450	dnaA chromosomal replication initiation protein; P	94.22
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	94.21
COG0714	329	MoxR-like ATPases [General function prediction onl	94.21
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	94.2
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	94.19
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	94.18
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	94.15
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	94.14
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.13
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	94.12
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	94.1
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	94.1
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.09
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	94.09
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	94.09
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	94.08
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	94.08
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	94.08
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	94.07
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	94.06
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	94.04
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	94.04
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	94.04
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	94.02
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	94.01
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	94.01
PRK13889	988	conjugal transfer relaxase TraA; Provisional	94.0
PRK12402	337	replication factor C small subunit 2; Reviewed	93.99
cd03269	210	ABC_putative_ATPase This subfamily is involved in	93.95
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	93.94
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	93.93
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	93.93
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	93.92
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	93.91
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	93.9
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	93.89
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	93.88
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	93.86
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	93.85
TIGR00767	415	rho transcription termination factor Rho. Members	93.85
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	93.85
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	93.84
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	93.82
cd03234	226	ABCG_White The White subfamily represents ABC tran	93.81
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	93.81
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	93.81
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	93.81
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	93.79
PF07726	131	AAA_3: ATPase family associated with various cellu	93.79
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	93.79
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	93.79
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	93.79
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	93.79
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	93.78
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	93.78
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	93.78
PRK13341	725	recombination factor protein RarA/unknown domain f	93.77
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	93.75

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.82  E-value=8.5e-20  Score=184.96  Aligned_cols=146  Identities=27%  Similarity=0.351  Sum_probs=102.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      ||||||+|||||||+|++|.+++.+. +....+++.+++.....                          .|. +...+.
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~-~~~v~~i~~~~~~~~~~--------------------------~y~-~~~~Ek   54 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEK-GKEVVIISDDSLGIDRN--------------------------DYA-DSKKEK   54 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHT-T--EEEE-THHHH-TTS--------------------------SS---GGGHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhc-CCEEEEEcccccccchh--------------------------hhh-chhhhH
Confidence            89999999999999999999998764 33445555443331110                          011 223455


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-----CCCHHHHH
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH-----GFTLDDIE  339 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih-----~VpeEvIe  339 (535)
                      .++..+...+++.|....  +||||++|+...+|.+++++||+++..+.+|+|.| +.+.|++||..     .+++++|.
T Consensus        55 ~~R~~l~s~v~r~ls~~~--iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~-~~e~~~~~N~~R~~~~~~~~e~i~  131 (270)
T PF08433_consen   55 EARGSLKSAVERALSKDT--IVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDC-PLETCLQRNSKRPEPERYPEETID  131 (270)
T ss_dssp             HHHHHHHHHHHHHHTT-S--EEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHTT-S--S-HHHHH
T ss_pred             HHHHHHHHHHHHhhccCe--EEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECC-CHHHHHHhhhccCCCCCCCHHHHH
Confidence            678888888999998887  99999999999999999999999999999999998 89999999986     39999999


Q ss_pred             HHhhccccCCccceeecCCCCcc
Q 009432          340 RMAGQWEEAPTLYLQLDIKTLFH  362 (535)
Q Consensus       340 ~M~krfE~~p~~y~~lD~~sll~  362 (535)
                      .|..+||++.+ .+.||...|+.
T Consensus       132 ~m~~RfE~P~~-~nrWD~plf~i  153 (270)
T PF08433_consen  132 DMIQRFEEPDP-KNRWDSPLFTI  153 (270)
T ss_dssp             HHHHH---TTS-S-GGGS-SEEE
T ss_pred             HHHHHhcCCCC-CCCccCCeEEE
Confidence            99999999766 78999988874

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.77  E-value=2.2e-18  Score=154.35  Aligned_cols=134  Identities=28%  Similarity=0.301  Sum_probs=99.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      ||||||+|||||||||+.|.+.+    +  ..+++.|+++........   .                  ...+......
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~----~--~~~i~~D~~~~~~~~~~~---~------------------~~~~~~~~~~   53 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL----G--AVVISQDEIRRRLAGEDP---P------------------SPSDYIEAEE   53 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS----T--EEEEEHHHHHHHHCCSSS---G------------------CCCCCHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC----C--CEEEeHHHHHHHHccccc---c------------------cchhHHHHHH
Confidence            79999999999999999999763    2  467788887765432100   0                  0112223445


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---------CCCH
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---------GFTL  335 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---------~Vpe  335 (535)
                      ..++.+...+...++.|.  .+|||++|...++|..|.++++++|+.+.+|+|.+ +.++|.+|+..         .++.
T Consensus        54 ~~~~~~~~~~~~~l~~g~--~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~-~~~~~~~R~~~R~~~~~~~~~~~~  130 (143)
T PF13671_consen   54 RAYQILNAAIRKALRNGN--SVVVDNTNLSREERARLRELARKHGYPVRVVYLDA-PEETLRERLAQRNREGDKRFEVPE  130 (143)
T ss_dssp             HHHHHHHHHHHHHHHTT---EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECH-HHHHHHHHHHTTHCCCTTS----H
T ss_pred             HHHHHHHHHHHHHHHcCC--CceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEEC-CHHHHHHHHHhcCCcccccccCcH
Confidence            567777788889999998  89999999999999999999999999999999987 67888887654         3889


Q ss_pred             HHHHHHhhccccC
Q 009432          336 DDIERMAGQWEEA  348 (535)
Q Consensus       336 EvIe~M~krfE~~  348 (535)
                      +.+++|+++||.+
T Consensus       131 ~~~~~~~~~~e~p  143 (143)
T PF13671_consen  131 EVFDRMLARFEPP  143 (143)
T ss_dssp             HHHHHHHHHHH--
T ss_pred             HHHHHHHHhhccC
Confidence            9999999999863

...

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.77  E-value=5.8e-18  Score=185.32  Aligned_cols=153  Identities=20%  Similarity=0.206  Sum_probs=119.3

Q ss_pred             CCCCCCCCCCCcCCCCCCCCCcccchhhhhcCCC--CCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC
Q 009432          143 PMQYPGESHLFPLRQLSPDKPKVVNALHLLKQPH--RATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM  220 (535)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~p~~v~~~~ll~~p~--r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~  220 (535)
                      .||++.+...|.   ...++|..+....-++.|.  -.....+.||||+|+|||||||||+.++...    + + .+++.
T Consensus       330 e~Fl~~~~~~~~---~~~f~p~~~~~~~~~~~~~~~~~~~~~p~LVil~G~pGSGKST~A~~l~~~~----g-~-~~vn~  400 (526)
T TIGR01663       330 EFFLGKPAAGFE---KPAFDPRSVQDQGPLCDPDDLALDDAPCEMVIAVGFPGAGKSHFCKKFFQPA----G-Y-KHVNA  400 (526)
T ss_pred             HHhCCCCccccc---ccCCCchhhcccccccCCcccccCCCCceEEEEECCCCCCHHHHHHHHHHHc----C-C-eEECc
Confidence            477777777773   4456887776544343332  2345788999999999999999999998642    2 2 34454


Q ss_pred             CceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHH
Q 009432          221 DDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQ  300 (535)
Q Consensus       221 DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~  300 (535)
                      |++                                         ..++.|+..++++|+.|.  .||||+||.++++|+.
T Consensus       401 D~l-----------------------------------------g~~~~~~~~a~~~L~~G~--sVVIDaTn~~~~~R~~  437 (526)
T TIGR01663       401 DTL-----------------------------------------GSTQNCLTACERALDQGK--RCAIDNTNPDAASRAK  437 (526)
T ss_pred             HHH-----------------------------------------HHHHHHHHHHHHHHhCCC--cEEEECCCCCHHHHHH
Confidence            431                                         024567788899999999  9999999999999999


Q ss_pred             HHHHHhhcCceEEEEEEecCCHHHHHHhhcC---------CCCHHHHHHHhhccccC
Q 009432          301 FWATAKRSGYEVYILEATYKDPAGCAARNVH---------GFTLDDIERMAGQWEEA  348 (535)
Q Consensus       301 f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---------~VpeEvIe~M~krfE~~  348 (535)
                      |+++|+++|+++++++|.+ +.++|.+||..         .++++++..|.++||++
T Consensus       438 ~i~lAk~~gv~v~~i~~~~-p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~P  493 (526)
T TIGR01663       438 FLQCARAAGIPCRCFLFNA-PLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAP  493 (526)
T ss_pred             HHHHHHHcCCeEEEEEeCC-CHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCC
Confidence            9999999999999999997 78999888754         56789999999999963

Note that the EC number for the kinase function is: 2.7.1.78

>COG4639 Predicted kinase [General function prediction only]

Probab=99.75  E-value=9.3e-18  Score=157.23  Aligned_cols=128  Identities=28%  Similarity=0.332  Sum_probs=104.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      ..||+|||+|||||||||+....        .+.+++.||+++..+. ..        +     ++..         ...
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~~--------~~~~lsld~~r~~lg~-~~--------~-----~e~s---------qk~   50 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENFL--------QNYVLSLDDLRLLLGV-SA--------S-----KENS---------QKN   50 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhCC--------CcceecHHHHHHHhhh-ch--------h-----hhhc---------ccc
Confidence            46999999999999999999653        2357788988875421 00        0     0000         112


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---CCCHHHHH
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---GFTLDDIE  339 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---~VpeEvIe  339 (535)
                      ...+++.+.+.+++.|..|+  +.|+||||.+++.|+.++++|+.|||..++|++++ ++++|.+||..   .++.++|.
T Consensus        51 ~~~~~~~l~~~l~qrl~~Gk--~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdt-p~~~c~aRNk~~~Rqv~~~VI~  127 (168)
T COG4639          51 DELVWDILYKQLEQRLRRGK--FTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDT-PLELCLARNKLRERQVPEEVIP  127 (168)
T ss_pred             HHHHHHHHHHHHHHHHHcCC--eEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeC-CHHHHHHHhhccchhCCHHHHH
Confidence            34477788888999999999  99999999999999999999999999999999996 89999999964   89999999


Q ss_pred             HHhhc
Q 009432          340 RMAGQ  344 (535)
Q Consensus       340 ~M~kr  344 (535)
                      +|.+.
T Consensus       128 r~~r~  132 (168)
T COG4639         128 RMLRE  132 (168)
T ss_pred             HHHHH
Confidence            99876

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=99.75  E-value=4.7e-18  Score=168.01  Aligned_cols=156  Identities=24%  Similarity=0.321  Sum_probs=102.9

Q ss_pred             CCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh
Q 009432          176 HRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME  255 (535)
Q Consensus       176 ~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e  255 (535)
                      ++.....++||||+||||+||||+|++|.++|.|. |..++||+.++|+|.......+                     .
T Consensus         5 ~~~~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~-g~~~~vFn~g~yRR~~~~~~~~---------------------~   62 (222)
T PF01591_consen    5 GRLFHAGKLVIVMVGLPARGKSYIARKLCRYLNWL-GVKTKVFNVGDYRRKLSGAPQD---------------------A   62 (222)
T ss_dssp             --------EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEEHHHHHHHHHSS-S----------------------G
T ss_pred             cccCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhc-CCCcceeecccceecccccccc---------------------c
Confidence            34556789999999999999999999999999887 5678999999999987542100                     1


Q ss_pred             ccCchHH------HHHHHHHHHHHHHHHHH--cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH
Q 009432          256 YCYEPEM------EEAYRSSMLKAFTRTLD--EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA  327 (535)
Q Consensus       256 y~y~~e~------ee~~~q~llk~akkaLk--~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~  327 (535)
                      ..|++..      .+.+...+++.+...|.  .|.  +.|+||||.++++|+.+++.+++.++++.|||+.|+| +.+++
T Consensus        63 ~ff~p~n~~~~~~R~~~a~~~l~dl~~~l~~~~G~--VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D-~~ii~  139 (222)
T PF01591_consen   63 EFFDPDNEEAKKLREQIAKEALEDLIEWLQEEGGQ--VAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDD-PEIIE  139 (222)
T ss_dssp             GGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--S--EEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE----HHHHH
T ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe--EEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCC-HHHHH
Confidence            1233332      22233345555666776  455  9999999999999999999999999999999999954 56677


Q ss_pred             hhcC-----------CCCHHHHHHHhhccccCCccceeec
Q 009432          328 RNVH-----------GFTLDDIERMAGQWEEAPTLYLQLD  356 (535)
Q Consensus       328 RNih-----------~VpeEvIe~M~krfE~~p~~y~~lD  356 (535)
                      +|++           .-+++.++.+.+|.+.....|..+|
T Consensus       140 ~NI~~~~~~spDY~~~~~e~A~~Df~~RI~~Ye~~YEpl~  179 (222)
T PF01591_consen  140 RNIREKKQNSPDYKGMDPEEAIEDFKKRIEHYEKVYEPLD  179 (222)
T ss_dssp             HHHHHHHTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHcCCcccccCCHHHHHHHHHHHHHhhcccccccc
Confidence            7764           3447899999999999999998887

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.72  E-value=5.3e-17  Score=158.50  Aligned_cols=148  Identities=28%  Similarity=0.297  Sum_probs=106.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      |||++|+|||||||||+.|++.+...+. . .++...||.+...     ++++  .       .+.++.    |.....+
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~~i~-~-vi~l~kdy~~~i~-----~DEs--l-------pi~ke~----yres~~k   62 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQEIW-R-VIHLEKDYLRGIL-----WDES--L-------PILKEV----YRESFLK   62 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHhhh-h-ccccchhhhhhee-----cccc--c-------chHHHH----HHHHHHH
Confidence            8999999999999999999999876643 2 3444455655432     1111  0       111111    1111111


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---CCCHHHHHHH
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---GFTLDDIERM  341 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---~VpeEvIe~M  341 (535)
                      .... |+   -.+|+ ..  +||+|++|+...+|+++++.|+++.....+|.+.| ++++|++||..   .+++|++++|
T Consensus        63 s~~r-ll---dSalk-n~--~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~-plDtc~rrN~ergepip~Evl~ql  134 (261)
T COG4088          63 SVER-LL---DSALK-NY--LVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRT-PLDTCLRRNRERGEPIPEEVLRQL  134 (261)
T ss_pred             HHHH-HH---HHHhc-ce--EEEEecccHHHHHHHHHHHHHHhcCCceEEEEEcc-CHHHHHHhhccCCCCCCHHHHHHH
Confidence            1111 22   22333 45  99999999999999999999999999999999987 89999999976   8999999999


Q ss_pred             hhccccCCccceeecCCCCc
Q 009432          342 AGQWEEAPTLYLQLDIKTLF  361 (535)
Q Consensus       342 ~krfE~~p~~y~~lD~~sll  361 (535)
                      +.+||++.+ ..+||.--|.
T Consensus       135 y~RfEePn~-~~rWDspll~  153 (261)
T COG4088         135 YDRFEEPNP-DRRWDSPLLV  153 (261)
T ss_pred             HHhhcCCCC-CccccCceEE
Confidence            999998554 5689886665

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.68  E-value=5.5e-16  Score=161.91  Aligned_cols=173  Identities=16%  Similarity=0.182  Sum_probs=117.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcccccc-ccccccCCccCCcchhhhhhhcc------
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDS-DVSKSSGSLRSKKPVTKMVMEYC------  257 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~-~~sk~~g~~r~kk~l~kkv~ey~------  257 (535)
                      |++|+|+|||||||+++.|...+....|..+.++++||++.........+ .....|+..  ++.+.+-+..++      
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~--R~~i~~~le~~v~a~~~g   78 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQF--RQELLKYLEHFLVAVING   78 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHH--HHHHHHHHHHHHHHhcCc
Confidence            57999999999999999999887633355778999999985321100000 000011111  111111110000      


Q ss_pred             -Cc-h------HHHHHHHHHH-----------------HHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE
Q 009432          258 -YE-P------EMEEAYRSSM-----------------LKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV  312 (535)
Q Consensus       258 -y~-~------e~ee~~~q~l-----------------lk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V  312 (535)
                       +. +      .+....+..|                 .......+..+.  +||||++|+...+|++++++|+.++..+
T Consensus        79 ~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~Lsrpl--lvilDd~fy~ks~Ryel~~LAr~~~~~~  156 (340)
T TIGR03575        79 SELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPL--CLVLDDNFYYQSMRYEVYQLARKYSLGF  156 (340)
T ss_pred             ccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCC--CceecCCCCCHHHHHHHHHHHHHhCCCE
Confidence             00 0      0010011111                 112234445555  8999999999999999999999999999


Q ss_pred             EEEEEecCCHHHHHHhhcC---CCCHHHHHHHhhccccCCccceeecCCCCcc
Q 009432          313 YILEATYKDPAGCAARNVH---GFTLDDIERMAGQWEEAPTLYLQLDIKTLFH  362 (535)
Q Consensus       313 ~vIe~~~~d~e~ci~RNih---~VpeEvIe~M~krfE~~p~~y~~lD~~sll~  362 (535)
                      ++|+|.+ ++++|++||..   .+++++|+.|..+||.+.+..+.||..+|+.
T Consensus       157 ~~V~ld~-ple~~l~RN~~R~~~v~devie~m~~r~E~P~~~~nrWd~pl~~v  208 (340)
T TIGR03575       157 CQLFLDC-PVESCLLRNKQRPVPLPDETIQLMGRKIEKPNPEKNAWEHNSLVI  208 (340)
T ss_pred             EEEEEeC-CHHHHHHHHhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCCCeEEE
Confidence            9999997 89999999976   6999999999999999888899999999984

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.67  E-value=6.7e-16  Score=153.06  Aligned_cols=144  Identities=26%  Similarity=0.223  Sum_probs=106.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      ||+|+|+|||||||+|+.|++++.+. +....+++.|.++.....                            |....+.
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~-~~~v~~i~~D~lr~~~~~----------------------------~~~~~e~   51 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEK-NIDVIILGTDLIRESFPV----------------------------WKEKYEE   51 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHc-CCceEEEccHHHHHHhHH----------------------------hhHHhHH
Confidence            69999999999999999999987543 233445454443321100                            0001112


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---CCCHHHHHHH
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---GFTLDDIERM  341 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---~VpeEvIe~M  341 (535)
                      ..+......++.+|+.|.  .||+|++|+...+|.+++++|+.+++.+++|+|.+ +.++|++||..   .++.++++.|
T Consensus        52 ~~~~~~~~~i~~~l~~~~--~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~-p~e~~~~Rn~~R~~~~~~~~i~~l  128 (249)
T TIGR03574        52 FIRDSTLYLIKTALKNKY--SVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKA-PLDTLLRRNIERGEKIPNEVIKDM  128 (249)
T ss_pred             HHHHHHHHHHHHHHhCCC--eEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecC-CHHHHHHHHHhCCCCCCHHHHHHH
Confidence            233344556778888898  89999999999999999999999999999999987 88999999875   5778999999


Q ss_pred             hhccccCCccceeecCCCCc
Q 009432          342 AGQWEEAPTLYLQLDIKTLF  361 (535)
Q Consensus       342 ~krfE~~p~~y~~lD~~sll  361 (535)
                      +.+|+.+.. ...||...|.
T Consensus       129 ~~r~e~p~~-~~~wd~~~~~  147 (249)
T TIGR03574       129 YEKFDEPGT-KYSWDLPDLT  147 (249)
T ss_pred             HHhhCCCCC-CCCccCceEE
Confidence            999997544 4577875554

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.63  E-value=4.5e-15  Score=149.81  Aligned_cols=140  Identities=24%  Similarity=0.167  Sum_probs=105.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      +.||||+|+|||||||+|++|++.+    . ...+++.|+++...... .          .         ...|.|..+.
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~----~-~~~~l~~D~~r~~~~~~-~----------~---------~~~~~~~~~~   56 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKN----P-KAVNVNRDDLRQSLFGH-G----------E---------WGEYKFTKEK   56 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHC----C-CCEEEeccHHHHHhcCC-C----------c---------ccccccChHH
Confidence            4689999999999999999999864    1 23567888765432210 0          0         0113344333


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc----CCCCHHHH
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV----HGFTLDDI  338 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi----h~VpeEvI  338 (535)
                      +...++.+...+..++..|.  .||||+++....+|..|.++|+++++.+.+|.+.+ +.++|.+|+.    +.++.++|
T Consensus        57 ~~~~~~~~~~~~~~~l~~g~--~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~~~~~~~~i  133 (300)
T PHA02530         57 EDLVTKAQEAAALAALKSGK--SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGERAVPEDVL  133 (300)
T ss_pred             HHHHHHHHHHHHHHHHHcCC--eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCcCCCCHHHH
Confidence            33344455566777888998  89999999999999999999999999998899987 7888888775    47899999


Q ss_pred             HHHhhccccCCc
Q 009432          339 ERMAGQWEEAPT  350 (535)
Q Consensus       339 e~M~krfE~~p~  350 (535)
                      ++|+++++....
T Consensus       134 ~~~~~~~~~~~~  145 (300)
T PHA02530        134 RSMFKQMKEYRG  145 (300)
T ss_pred             HHHHHHHHHhcC
Confidence            999999997643

>PRK06762 hypothetical protein; Provisional

Probab=99.56  E-value=6.8e-14  Score=129.61  Aligned_cols=130  Identities=19%  Similarity=0.119  Sum_probs=92.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      +.+|+|+|+|||||||+|+.|++.+    +....+++.|.++...... ....         .         .  +    
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l----~~~~~~i~~D~~r~~l~~~-~~~~---------~---------~--~----   52 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL----GRGTLLVSQDVVRRDMLRV-KDGP---------G---------N--L----   52 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCCeEEecHHHHHHHhccc-cCCC---------C---------C--c----
Confidence            5799999999999999999999875    2234556766665432210 0000         0         0  0    


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-----CCCHHH
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH-----GFTLDD  337 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih-----~VpeEv  337 (535)
                         .+..+...+...++.|.  +||+|+++....++..+..+++.+++++.+|++.+ ++++|++|+.+     .++++.
T Consensus        53 ---~~~~~~~~~~~~~~~g~--~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Lda-p~e~~~~R~~~R~~~~~~~~~~  126 (166)
T PRK06762         53 ---SIDLIEQLVRYGLGHCE--FVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDL-SFEETLRRHSTRPKSHEFGEDD  126 (166)
T ss_pred             ---CHHHHHHHHHHHHhCCC--EEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeC-CHHHHHHHHhcccccccCCHHH
Confidence               11122233445577888  99999999888888888899999999999999987 78999998865     467888


Q ss_pred             HHHHhhcccc
Q 009432          338 IERMAGQWEE  347 (535)
Q Consensus       338 Ie~M~krfE~  347 (535)
                      |+.++..++.
T Consensus       127 l~~~~~~~~~  136 (166)
T PRK06762        127 MRRWWNPHDT  136 (166)
T ss_pred             HHHHHhhcCC
Confidence            8888776664

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=99.52  E-value=5.6e-14  Score=138.66  Aligned_cols=148  Identities=26%  Similarity=0.338  Sum_probs=114.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      |||+||+|.|||||.|+.|++.+.+.+....++++.|+-                +|+++.        ..|. +-..+.
T Consensus         3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----------------lg~~~n--------s~y~-~s~~EK   57 (281)
T KOG3062|consen    3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----------------LGIEKN--------SNYG-DSQAEK   57 (281)
T ss_pred             eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----------------cCCCCc--------cccc-ccHHHH
Confidence            799999999999999999999998876443333233322                122210        0111 112455


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-------CCCHHH
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH-------GFTLDD  337 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih-------~VpeEv  337 (535)
                      +.+..+..++.+.|..+.  +||||+-|+-.-.|.+++++||..+...++|.+.+ +.+.|.+-|..       +.+++.
T Consensus        58 ~lRg~L~S~v~R~Lsk~~--iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~v-p~e~~r~~Ns~~~~p~e~gy~~e~  134 (281)
T KOG3062|consen   58 ALRGKLRSAVDRSLSKGD--IVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAV-PQELCREWNSEREDPGEDGYDDEL  134 (281)
T ss_pred             HHHHHHHHHHHhhcccCc--EEEEecccccccceeeeeeehhccceeEEEEEecC-CHHHHHHhcccCCCCCCCCCCHHH
Confidence            678888889999999998  99999999999999999999999988777777766 88999998865       488999


Q ss_pred             HHHHhhccccCCccceeecCCCCc
Q 009432          338 IERMAGQWEEAPTLYLQLDIKTLF  361 (535)
Q Consensus       338 Ie~M~krfE~~p~~y~~lD~~sll  361 (535)
                      ++.+..|||+ |.-.++||.-=+.
T Consensus       135 le~L~~RyEe-P~s~NRWDsPLf~  157 (281)
T KOG3062|consen  135 LEALVQRYEE-PNSRNRWDSPLFT  157 (281)
T ss_pred             HHHHHHHhhC-CCccccccCcceE
Confidence            9999999998 6668999986554

>COG0645 Predicted kinase [General function prediction only]

Probab=99.47  E-value=4.8e-13  Score=127.09  Aligned_cols=140  Identities=22%  Similarity=0.168  Sum_probs=108.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      +.+++|+|+|||||||+|+.|.+.+   |   ..++..|+++.... ++....                +...-.|.+++
T Consensus         1 ~~l~l~~Gl~GsGKstlA~~l~~~l---g---A~~lrsD~irk~L~-g~p~~~----------------r~~~g~ys~~~   57 (170)
T COG0645           1 GRLVLVGGLPGSGKSTLARGLAELL---G---AIRLRSDVIRKRLF-GVPEET----------------RGPAGLYSPAA   57 (170)
T ss_pred             CeEEEEecCCCccHhHHHHHHHhhc---C---ceEEehHHHHHHhc-CCcccc----------------cCCCCCCcHHH
Confidence            3689999999999999999999875   2   34556676655443 332111                01134688899


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH----hhc--CCCCHH
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA----RNV--HGFTLD  336 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~----RNi--h~VpeE  336 (535)
                      ....|..|...++.+|..|.  .||+|++|.+..+|+.+..+|++.|..+..|.|.+ +.++...    |+.  .+.+.+
T Consensus        58 ~~~vy~~l~~~A~l~l~~G~--~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~a-p~~v~~~rl~aR~~d~sDA~~~  134 (170)
T COG0645          58 TAAVYDELLGRAELLLSSGH--SVVLDATFDRPQERALARALARDVGVAFVLIRLEA-PEEVLRGRLAARKGDASDATFD  134 (170)
T ss_pred             HHHHHHHHHHHHHHHHhCCC--cEEEecccCCHHHHHHHHHHHhccCCceEEEEcCC-cHHHHHHHHHHhCCCcccchHH
Confidence            99999999999999999999  99999999999999999999999999999999987 5554433    443  245677


Q ss_pred             HHHHHhhccccC
Q 009432          337 DIERMAGQWEEA  348 (535)
Q Consensus       337 vIe~M~krfE~~  348 (535)
                      +++.....|+..
T Consensus       135 il~~q~~~~~~~  146 (170)
T COG0645         135 ILRVQLAEDEPW  146 (170)
T ss_pred             HHHHHHhhhCCc
Confidence            777777777763

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.47  E-value=8e-13  Score=124.56  Aligned_cols=145  Identities=20%  Similarity=0.161  Sum_probs=91.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ++++|+|+|+|||||||+|+.|.++|.+.| ..+.++..|.++......                         ..|+.+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g-~~~~~LDgD~lR~~l~~d-------------------------l~fs~~   54 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARG-IKVYLLDGDNLRHGLNAD-------------------------LGFSKE   54 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTT-S-EEEEEHHHHCTTTTTT---------------------------SSHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEecCcchhhccCCC-------------------------CCCCHH
Confidence            368999999999999999999999998764 566666666655433211                         112222


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHHH--
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIE--  339 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvIe--  339 (535)
                      .......++...+....++|.  +||++.+....+.|....++....  .++-|++.| +.++|.+|+.++.-.....  
T Consensus        55 dR~e~~rr~~~~A~ll~~~G~--ivIva~isp~~~~R~~~R~~~~~~--~f~eVyv~~-~~e~~~~RD~KglY~ka~~g~  129 (156)
T PF01583_consen   55 DREENIRRIAEVAKLLADQGI--IVIVAFISPYREDREWARELIPNE--RFIEVYVDC-PLEVCRKRDPKGLYAKARAGE  129 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTS--EEEEE----SHHHHHHHHHHHHTT--EEEEEEEES--HHHHHHHTTTSHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHhCCC--eEEEeeccCchHHHHHHHHhCCcC--ceEEEEeCC-CHHHHHHhCchhHHHHhhCCC
Confidence            222334466677777889998  999999999999999888888755  566777776 8999999998865544432  


Q ss_pred             -----HHhhccccCCccceeecC
Q 009432          340 -----RMAGQWEEAPTLYLQLDI  357 (535)
Q Consensus       340 -----~M~krfE~~p~~y~~lD~  357 (535)
                           -+-.-||++...-+.+|.
T Consensus       130 i~~~~Gvd~~ye~P~~pdl~idt  152 (156)
T PF01583_consen  130 IKNFTGVDDPYEEPLNPDLVIDT  152 (156)
T ss_dssp             SSSHTTTSS-----SS-SEEEET
T ss_pred             cCCccccccCCCCCCCCeEEEeC
Confidence                 123455555444444444

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.46  E-value=1e-12  Score=119.62  Aligned_cols=133  Identities=20%  Similarity=0.149  Sum_probs=89.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcc-ccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEK-VEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~-v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      ||+|+|+|||||||+|+.|.+.+    +  ..+++.|+++...... ...       |..              +.....
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~----~--~~~i~~D~~~~~~~~~~~~~-------~~~--------------~~~~~~   53 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL----G--APFIDGDDLHPPANIAKMAA-------GIP--------------LNDEDR   53 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc----C--CEEEeCcccccHHHHHHHHc-------CCC--------------CCccch
Confidence            68999999999999999999763    2  3567888876532100 000       000              000000


Q ss_pred             HHHHHHHHHHHHHHH-HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCHHHH
Q 009432          264 EAYRSSMLKAFTRTL-DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTLDDI  338 (535)
Q Consensus       264 e~~~q~llk~akkaL-k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~VpeEvI  338 (535)
                      ..+...+...+...+ ..|.  .||+|+++....+|..+.++|  +++.+.+|+|.+ +.++|.+|+..    ..+.+.|
T Consensus        54 ~~~~~~~~~~~~~~l~~~~~--~vVid~~~~~~~~r~~~~~~~--~~~~~~~v~l~~-~~~~~~~R~~~R~~~~~~~~~~  128 (150)
T cd02021          54 WPWLQALTDALLAKLASAGE--GVVVACSALKRIYRDILRGGA--ANPRVRFVHLDG-PREVLAERLAARKGHFMPADLL  128 (150)
T ss_pred             hhHHHHHHHHHHHHHHhCCC--CEEEEeccccHHHHHHHHhcC--CCCCEEEEEEEC-CHHHHHHHHHhcccCCCCHHHH
Confidence            111222222222223 4777  899999999999999999888  788888999987 78888887664    5668899


Q ss_pred             HHHhhccccCC
Q 009432          339 ERMAGQWEEAP  349 (535)
Q Consensus       339 e~M~krfE~~p  349 (535)
                      +.+.+.|+.+.
T Consensus       129 ~~~~~~~~~p~  139 (150)
T cd02021         129 DSQFETLEPPG  139 (150)
T ss_pred             HHHHHHhcCCC
Confidence            99999999754

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.44  E-value=1.8e-12  Score=121.95  Aligned_cols=127  Identities=20%  Similarity=0.136  Sum_probs=80.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      .+|||+|+|||||||+|+.|.+.+    +.....++.|+|+.........         ..+.......  ...+.....
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~----~~~~~~~~~D~~~~~~~~~~~~---------~~~~~~~~~~--~~~~~~~~~   67 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVL----AEPWLHFGVDSFIEALPLKCQD---------AEGGIEFDGD--GGVSPGPEF   67 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh----CCCccccCccHHHHhcChhhcc---------cccccccCcc--CCcccchHH
Confidence            489999999999999999999764    2222344778776543211000         0000000000  001111233


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeCCCC-CHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNL-RVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~-~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ..++..+...+...++.|.  .||||+++. ..+.|..+..+   .+.++.+|+|.| +.++|.+|...
T Consensus        68 ~~~y~~~~~~~~~~l~~G~--~VIvD~~~~~~~~~r~~~~~~---~~~~~~~v~l~~-~~~~l~~R~~~  130 (175)
T cd00227          68 RLLEGAWYEAVAAMARAGA--NVIADDVFLGRAALQDCWRSF---VGLDVLWVGVRC-PGEVAEGRETA  130 (175)
T ss_pred             HHHHHHHHHHHHHHHhCCC--cEEEeeeccCCHHHHHHHHHh---cCCCEEEEEEEC-CHHHHHHHHHh
Confidence            4567777778888999999  999999998 45555444333   357788999998 67999998875

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.43  E-value=1.4e-12  Score=120.65  Aligned_cols=117  Identities=22%  Similarity=0.180  Sum_probs=80.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      +|+|+|+|||||||+|+.|.+.+.+.+. ...+++.|.++......                         ..|..+...
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~-~~~~i~~d~~r~~l~~~-------------------------~~~~~~~~~   54 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGR-PVYVLDGDNVRHGLNKD-------------------------LGFSREDRE   54 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCHHHHHhhhhc-------------------------cCCCcchHH
Confidence            5899999999999999999998754432 22344445444322110                         011111111


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCC
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHG  332 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~  332 (535)
                      ..+..+...+...++.|.  +||+|+++....+|..+.++++  ++.+.+++|.+ +.++|.+|+.++
T Consensus        55 ~~~~~~~~~a~~l~~~G~--~VIid~~~~~~~~R~~~~~l~~--~~~~~~i~l~~-~~e~~~~R~~~~  117 (149)
T cd02027          55 ENIRRIAEVAKLLADAGL--IVIAAFISPYREDREAARKIIG--GGDFLEVFVDT-PLEVCEQRDPKG  117 (149)
T ss_pred             HHHHHHHHHHHHHHhCCC--EEEEccCCCCHHHHHHHHHhcC--CCCEEEEEEeC-CHHHHHHhCchh
Confidence            222334444556678898  9999999999999999998887  78888899987 789999998663

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.40  E-value=6e-12  Score=119.05  Aligned_cols=120  Identities=20%  Similarity=0.133  Sum_probs=84.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ..+.+|+|+|+|||||||+|+.|...+...+ ....+++.|+++.....                         ...|..
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~-~~~~~l~~d~~r~~l~~-------------------------~~~~~~   69 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKG-YRVYVLDGDNVRHGLNK-------------------------DLGFSE   69 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CcEEEECChHHHhhhcc-------------------------ccCCCH
Confidence            4567999999999999999999998875433 23345555654432211                         012332


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      +.....+..+...+...++.|.  +||+|+++..+.+|..+..++...  .+.+|++.+ +.++|.+|+.+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~G~--~VI~d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~-~~e~~~~R~~~  135 (184)
T TIGR00455        70 EDRKENIRRIGEVAKLFVRNGI--IVITSFISPYRADRQMVRELIEKG--EFIEVFVDC-PLEVCEQRDPK  135 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCC--EEEEecCCCCHHHHHHHHHhCcCC--CeEEEEEeC-CHHHHHHhCch
Confidence            3323334445555666788998  999999999999999988888865  566677776 78999999653

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.37  E-value=1.2e-11  Score=114.20  Aligned_cols=129  Identities=19%  Similarity=0.143  Sum_probs=85.1

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA  265 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~  265 (535)
                      |+|+|++||||||+|+.|...+    +  ..+++.|+++........      ..|              ..+.......
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l----~--~~~v~~D~~~~~~~~~~~------~~~--------------~~~~~~~~~~   54 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL----G--AKFIEGDDLHPAANIEKM------SAG--------------IPLNDDDRWP   54 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc----C--CeEEeCccccChHHHHHH------HcC--------------CCCChhhHHH
Confidence            5799999999999999999874    2  356688887542110000      000              0011111222


Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCHHHHHHH
Q 009432          266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTLDDIERM  341 (535)
Q Consensus       266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~VpeEvIe~M  341 (535)
                      ++..+.+.+...+..|.  .+|||+++.++.+|.    .++.++..+.++++.+ +.++|++|...    ..+.+.|+.+
T Consensus        55 ~~~~~~~~~~~~l~~~~--~~Vi~~t~~~~~~r~----~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~~~i~~~  127 (163)
T TIGR01313        55 WLQNLNDASTAAAAKNK--VGIITCSALKRHYRD----ILREAEPNLHFIYLSG-DKDVILERMKARKGHFMKADMLESQ  127 (163)
T ss_pred             HHHHHHHHHHHHHhcCC--CEEEEecccHHHHHH----HHHhcCCCEEEEEEeC-CHHHHHHHHHhccCCCCCHHHHHHH
Confidence            44556666777888887  789999988766654    4447788888888887 78899888764    2356788888


Q ss_pred             hhcccc
Q 009432          342 AGQWEE  347 (535)
Q Consensus       342 ~krfE~  347 (535)
                      +.+++.
T Consensus       128 ~~~~~~  133 (163)
T TIGR01313       128 FAALEE  133 (163)
T ss_pred             HHHhCC
Confidence            777664

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.24  E-value=8e-11  Score=113.09  Aligned_cols=135  Identities=19%  Similarity=0.078  Sum_probs=95.1

Q ss_pred             CCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccC
Q 009432          179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCY  258 (535)
Q Consensus       179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y  258 (535)
                      ...++.+|+|+||+||||||+|.+|.++|.++| ..+.++.-|.++......         .||.               
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G-~~~y~LDGDnvR~gL~~d---------LgFs---------------   73 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG-YHVYLLDGDNVRHGLNRD---------LGFS---------------   73 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC-CeEEEecChhHhhcccCC---------CCCC---------------
Confidence            356778999999999999999999999998874 566777777666544321         2222               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHH
Q 009432          259 EPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDI  338 (535)
Q Consensus       259 ~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvI  338 (535)
                       .+.......+....++...+.|.  +||+-.+...++.|+.-.++..+-  +++-|++.| ++++|.+|..++......
T Consensus        74 -~edR~eniRRvaevAkll~daG~--iviva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~-pl~vce~RDpKGLYkKAr  147 (197)
T COG0529          74 -REDRIENIRRVAEVAKLLADAGL--IVIVAFISPYREDRQMARELLGEG--EFIEVYVDT-PLEVCERRDPKGLYKKAR  147 (197)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHCCe--EEEEEeeCccHHHHHHHHHHhCcC--ceEEEEeCC-CHHHHHhcCchHHHHHHH
Confidence             22222233455566777778998  999999999999998777766543  344455554 899999999887666554


Q ss_pred             HHHhhc
Q 009432          339 ERMAGQ  344 (535)
Q Consensus       339 e~M~kr  344 (535)
                      ..-.++
T Consensus       148 ~GeI~~  153 (197)
T COG0529         148 AGEIKN  153 (197)
T ss_pred             cCCCCC
Confidence            444333

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.23  E-value=7.6e-11  Score=133.03  Aligned_cols=152  Identities=22%  Similarity=0.302  Sum_probs=105.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ..++|+|+|+||+||||+|++|++++.|. +..+.+++.++|++.........         .+..         .+ ..
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~-~~~~~~~~~~~~rr~~~~~~~~~---------~~~~---------~~-~~  273 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWN-GLQSRIFIHQAYRRRLERRGGAV---------SSPT---------GA-AE  273 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhc-CCCcEEEccchhHhhhccCCCCc---------CCCC---------CH-HH
Confidence            45799999999999999999999998776 45678999999988764211100         0000         00 11


Q ss_pred             HHHHHHHHHHHHHHHHH-HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCc----eEEEEEEecCCHHHHHHhhcC-----
Q 009432          262 MEEAYRSSMLKAFTRTL-DEGNFTIVIVDDRNLRVADFAQFWATAKRSGY----EVYILEATYKDPAGCAARNVH-----  331 (535)
Q Consensus       262 ~ee~~~q~llk~akkaL-k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~----~V~vIe~~~~d~e~ci~RNih-----  331 (535)
                      .+......+.+.+...+ +.|.  ++|+|++|.+...|..+.+.+++.|.    .|+||++.|++ ...+++|+.     
T Consensus       274 ~e~~~~~~~~~d~~~~v~~~Gg--vaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~-~~~i~~ni~r~~~~  350 (664)
T PTZ00322        274 VEFRIAKAIAHDMTTFICKTDG--VAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNN-SETIRRNVLRAKEM  350 (664)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCC--EEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCC-HHHHHHHHHHHHhc
Confidence            22223333433333444 4577  99999999999999999999998875    79999998744 444666653     


Q ss_pred             --CCCHHHHHHHhhccccCCccceeec
Q 009432          332 --GFTLDDIERMAGQWEEAPTLYLQLD  356 (535)
Q Consensus       332 --~VpeEvIe~M~krfE~~p~~y~~lD  356 (535)
                        +..++.+++++++|+.....|..+|
T Consensus       351 ~~~~~e~~~~~~~~~~~~~~~~Ye~~~  377 (664)
T PTZ00322        351 FPGAPEDFVDRYYEVIEQLEAVYKSLN  377 (664)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhcccCC
Confidence              3445677888888887777777665

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.22  E-value=1.5e-10  Score=128.70  Aligned_cols=122  Identities=19%  Similarity=0.177  Sum_probs=86.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ..+.+|+|+|+|||||||+|+.|++.+.+..|....++..|. ++..+.+                        +..|+.
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~-vr~~l~g------------------------e~~f~~  444 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDV-VRKHLSS------------------------ELGFSK  444 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcH-HHHhccC------------------------CCCCCH
Confidence            456799999999999999999999987542333334545443 3332211                        012333


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      +.....+..+...+...++.|.  +||+|+++...+.|..+++++++.+ .+.+|+|.+ +.++|.+|..+
T Consensus       445 ~er~~~~~~l~~~a~~v~~~Gg--~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~-p~e~l~~R~rr  511 (568)
T PRK05537        445 EDRDLNILRIGFVASEITKNGG--IAICAPIAPYRATRREVREMIEAYG-GFIEVHVAT-PLEVCEQRDRK  511 (568)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC--EEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcC-CHHHHHHhccc
Confidence            3333334445445667788998  9999999999999999999999876 355778876 78999999754

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.21  E-value=1.6e-10  Score=129.61  Aligned_cols=119  Identities=18%  Similarity=0.095  Sum_probs=88.1

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ..+.+|+|+|+|||||||+|+.|++.+.+.+ ....+++.|+++.....                         ...|..
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~-~~~~~l~~D~~r~~l~~-------------------------~~~~~~  511 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHALG-RHTYLLDGDNVRHGLNR-------------------------DLGFSD  511 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHHcC-CCEEEEcChhhhhccCC-------------------------CCCCCH
Confidence            4689999999999999999999999876543 33455677766543211                         012444


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV  330 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi  330 (535)
                      +.....++.+...+...++.|.  +||+|+++..+.+|..+.++++..  .+++|+|.+ +.++|.+|+.
T Consensus       512 ~~r~~~~~~l~~~a~~~~~~G~--~Vivda~~~~~~~R~~~r~l~~~~--~~~~v~L~~-~~e~~~~R~~  576 (632)
T PRK05506        512 ADRVENIRRVAEVARLMADAGL--IVLVSFISPFREERELARALHGEG--EFVEVFVDT-PLEVCEARDP  576 (632)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC--EEEEECCCCCHHHHHHHHHhcccC--CeEEEEECC-CHHHHHhhCC
Confidence            4444455566666777789998  999999999999999888888765  556777776 7899999964

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.16  E-value=5.1e-10  Score=104.95  Aligned_cols=117  Identities=17%  Similarity=0.127  Sum_probs=74.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...+|+|+|+|||||||+|+.|+..+...++ ...++..|.++.....+                         ..|..+
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~-~v~~id~D~~~~~~~~~-------------------------~~~~~~   56 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGY-PVEVLDGDAVRTNLSKG-------------------------LGFSKE   56 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEcCccHHHHHhcC-------------------------CCCChh
Confidence            4569999999999999999999998765432 34455666554321110                         011111


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ........+...+...+..|.  +||+|+++.....|+.+.+++    ..+.+|++++ +.++|.+|+.+
T Consensus        57 ~r~~~~~~~~~~a~~~~~~g~--~vi~~~~~~~~~~~~~l~~~~----~~~~~v~l~~-~~e~~~~R~~~  119 (175)
T PRK00889         57 DRDTNIRRIGFVANLLTRHGV--IVLVSAISPYRETREEVRANI----GNFLEVFVDA-PLEVCEQRDVK  119 (175)
T ss_pred             hHHHHHHHHHHHHHHHHhCCC--EEEEecCCCCHHHHHHHHhhc----CCeEEEEEcC-CHHHHHHhCcc
Confidence            111122233333444557787  999999988777777666554    2456777776 78999999743

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=99.16  E-value=6.1e-11  Score=115.42  Aligned_cols=154  Identities=18%  Similarity=0.182  Sum_probs=104.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      .|+.+.|+|+||||||+++|.-...+.--.....++.||+++...-.           .+...++-.          ..-
T Consensus         2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpS-----------aD~a~keqR----------gr~   60 (291)
T KOG4622|consen    2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPS-----------ADKAAKEQR----------GRF   60 (291)
T ss_pred             ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcc-----------hhhhHHHHh----------chH
Confidence            47899999999999999998654332211122345788887543110           000000000          001


Q ss_pred             HHHHHHHHHHHHH----------HH-----HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432          264 EAYRSSMLKAFTR----------TL-----DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR  328 (535)
Q Consensus       264 e~~~q~llk~akk----------aL-----k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R  328 (535)
                      +...+.|+.+..+          .-     ..|. .++++|+.|+.+++|..|.++|+.+|+.+-+|++.. ...+|+++
T Consensus        61 ~~~iEk~ISaiqedtdwppqvrrisssgdynsgr-hiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas-~ide~Lqa  138 (291)
T KOG4622|consen   61 ECHIEKCISAIQEDTDWPPQVRRISSSGDYNSGR-HIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLAS-GIDEALQA  138 (291)
T ss_pred             HHHHHHHHHHHhcccCCCchheeccccCCcCCCc-eEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhh-hHHHHHHh
Confidence            1233344443321          11     1233 488999999999999999999999999998888874 78999999


Q ss_pred             hcC-----CCCHHHHHHHhhccccCCccceeecCCCCc
Q 009432          329 NVH-----GFTLDDIERMAGQWEEAPTLYLQLDIKTLF  361 (535)
Q Consensus       329 Nih-----~VpeEvIe~M~krfE~~p~~y~~lD~~sll  361 (535)
                      |.|     .++-++|++|..++|- |..-..|+.+|++
T Consensus       139 NS~Rsda~k~~~dtiRki~EklE~-PD~~ea~e~NSit  175 (291)
T KOG4622|consen  139 NSHRSDAEKQKNDTIRKIFEKLED-PDEIEALEENSIT  175 (291)
T ss_pred             ccccccchhCccHHHHHHHHhccC-ccHHHHHHhccee
Confidence            998     6778999999999996 5666678888887

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.14  E-value=4.7e-10  Score=107.96  Aligned_cols=126  Identities=19%  Similarity=0.198  Sum_probs=76.1

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE  259 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~  259 (535)
                      ...|.+|||.|.|||||||++..+...+.   +....+++.|+++...-..    .            .+.+. ......
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~---~~~~v~i~~D~~r~~~p~~----~------------~~~~~-~~~~~~   71 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG---GGGIVVIDADEFRQFHPDY----D------------ELLKA-DPDEAS   71 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT----TT-SEEE-GGGGGGGSTTH----H------------HHHHH-HCCCTH
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhcc---CCCeEEEehHHHHHhccch----h------------hhhhh-hhhhhH
Confidence            36799999999999999999999987642   2345677888876644210    0            00000 000011


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432          260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR  328 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R  328 (535)
                      ..............+..+++.|.  .||+|+|+........+++.+++.||.|.++.+.+ +.+.++.|
T Consensus        72 ~~~~~~a~~~~~~~~~~a~~~~~--nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~-~~e~s~~r  137 (199)
T PF06414_consen   72 ELTQKEASRLAEKLIEYAIENRY--NIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAV-PPELSIER  137 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCT----EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC--CEEEecCCCChhHHHHHHHHHHcCCceEEEEEEEC-CHHHHHHH
Confidence            11122233344455777889998  99999999998888889999999999999888886 66666655

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.08  E-value=1.5e-09  Score=104.40  Aligned_cols=119  Identities=17%  Similarity=0.118  Sum_probs=80.6

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE  259 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~  259 (535)
                      ..++.+|+|+|++||||||||+.|...+...| ....++..|+++......+                         .|.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~-~~~~~ld~d~~~~~~~~~~-------------------------~~~   74 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELG-VSTYLLDGDNVRHGLCSDL-------------------------GFS   74 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCC-CCEEEEcCEeHHhhhhhcC-------------------------CcC
Confidence            35678999999999999999999998775443 2233444555442211100                         111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                      .......+..+...+...+..|.  +||.+..+..+++|..+.++++..+  +++|+|.+ +.++|.+|.
T Consensus        75 ~~~~~~~~~~l~~~a~~~~~~G~--~VI~~~~~~~~~~R~~~r~~l~~~~--~i~V~L~~-~~e~~~~R~  139 (198)
T PRK03846         75 DADRKENIRRVGEVAKLMVDAGL--VVLTAFISPHRAERQMVRERLGEGE--FIEVFVDT-PLAICEARD  139 (198)
T ss_pred             cccHHHHHHHHHHHHHHHhhCCC--EEEEEeCCCCHHHHHHHHHHcccCC--EEEEEEcC-CHHHHHhcC
Confidence            11222233445555667778898  8888888888999999999998765  44577776 789999994

>PRK14527 adenylate kinase; Provisional

Probab=99.03  E-value=1.6e-09  Score=103.31  Aligned_cols=141  Identities=18%  Similarity=0.158  Sum_probs=87.2

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-hccC
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-EYCY  258 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-ey~y  258 (535)
                      ...+.+|+|+|+|||||||+|+.|++++    +  ...++.||+++.......          ..+ .. .+.+. ...+
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~----~--~~~is~gd~~r~~~~~~~----------~~~-~~-~~~~~~~g~~   64 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQEL----G--LKKLSTGDILRDHVARGT----------ELG-QR-AKPIMEAGDL   64 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHh----C--CCCCCccHHHHHHHhcCc----------HHH-HH-HHHHHHcCCC
Confidence            3567899999999999999999999764    2  245688888876542100          000 00 00100 0111


Q ss_pred             chHHHHHHHHHHHHHHHHHHHc--CCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcC----
Q 009432          259 EPEMEEAYRSSMLKAFTRTLDE--GNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVH----  331 (535)
Q Consensus       259 ~~e~ee~~~q~llk~akkaLk~--G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih----  331 (535)
                      .++      ..+...+...|..  +.  .+|||+...+..++..|..+++..|..+ .++++.+ +.++|++|-..    
T Consensus        65 ~p~------~~~~~l~~~~l~~~~~~--~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~-~~~~~~~Rl~~R~~~  135 (191)
T PRK14527         65 VPD------ELILALIRDELAGMEPV--RVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEV-PDEELIRRIVERARQ  135 (191)
T ss_pred             CcH------HHHHHHHHHHHhcCCCC--cEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEEC-CHHHHHHHHHcCccc
Confidence            111      1133334445544  34  6999997667888888888999988877 4577887 67777765332    


Q ss_pred             ----CCCHHHHHHHhhcccc
Q 009432          332 ----GFTLDDIERMAGQWEE  347 (535)
Q Consensus       332 ----~VpeEvIe~M~krfE~  347 (535)
                          ..+++.|++..+.|..
T Consensus       136 ~~r~dd~~~~~~~R~~~y~~  155 (191)
T PRK14527        136 EGRSDDNEETVRRRQQVYRE  155 (191)
T ss_pred             CCCCCCCHHHHHHHHHHHHH
Confidence                3356666666666653

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.01  E-value=2.7e-09  Score=100.14  Aligned_cols=119  Identities=14%  Similarity=0.173  Sum_probs=70.1

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh-ccCchHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME-YCYEPEME  263 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e-y~y~~e~e  263 (535)
                      +|+|+|+|||||||+|+.|++++    +  ..+++.+|+++......  ..    +|     +.+...+.. ..+..+. 
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~----~--~~~is~~d~lr~~~~~~--~~----~~-----~~~~~~~~~g~~~~~~~-   62 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF----G--FTHLSAGDLLRAEIKSG--SE----NG-----ELIESMIKNGKIVPSEV-   62 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc----C--CeEEECChHHHHHHhcC--Ch----HH-----HHHHHHHHCCCcCCHHH-
Confidence            58999999999999999999864    2  35779999888654310  00    00     000000000 0111111 


Q ss_pred             HHHHHHHHHHHHHHHHc--CCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432          264 EAYRSSMLKAFTRTLDE--GNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV  330 (535)
Q Consensus       264 e~~~q~llk~akkaLk~--G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi  330 (535)
                         ...+   +.+.+..  +.  .+|||+...+.+++..|.+++......-.+|.+.+ +.++|++|-.
T Consensus        63 ---~~~l---l~~~~~~~~~~--~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~-~~~~~~~Rl~  122 (183)
T TIGR01359        63 ---TVKL---LKNAIQADGSK--KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDC-PEEVMIKRLL  122 (183)
T ss_pred             ---HHHH---HHHHHhccCCC--cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHh
Confidence               1122   2333322  45  89999998888888888877643222224677776 6777777633

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.00  E-value=5.3e-09  Score=98.18  Aligned_cols=117  Identities=21%  Similarity=0.177  Sum_probs=66.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ..+.+|+|+|++||||||+|+.|.+.+...+ ....++..|+++.....                          +.|..
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~-~~~~~~~~d~~r~~~~~--------------------------~~~~~   57 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKY-SNVIYLDGDELREILGH--------------------------YGYDK   57 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcC-CcEEEEecHHHHhhcCC--------------------------CCCCH
Confidence            4667999999999999999999998875432 22334444443321110                          01111


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ....................|.  +||+|+++...+.+.    +++.....+.+|++.+ ++++|++|..+
T Consensus        58 ~~~~~~~~~~~~l~~~l~~~g~--~VI~~~~~~~~~~~~----~~~~~~~~~~~v~l~~-~~e~~~~R~~~  121 (176)
T PRK05541         58 QSRIEMALKRAKLAKFLADQGM--IVIVTTISMFDEIYA----YNRKHLPNYFEVYLKC-DMEELIRRDQK  121 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC--EEEEEeCCcHHHHHH----HHHhhcCCeEEEEEeC-CHHHHHHhchh
Confidence            1111111111112222346787  999999886543333    3333333345677776 78999999654

>PRK14531 adenylate kinase; Provisional

Probab=98.99  E-value=4e-09  Score=100.27  Aligned_cols=132  Identities=17%  Similarity=0.111  Sum_probs=82.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc-----cCc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY-----CYE  259 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey-----~y~  259 (535)
                      -|+|+|+|||||||+|+.|++.+    |  ...++.+|+++.+.....               .+-+++.++     .+.
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~----g--~~~is~gd~lr~~~~~~~---------------~~~~~~~~~~~~G~~v~   62 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAH----G--LRHLSTGDLLRSEVAAGS---------------ALGQEAEAVMNRGELVS   62 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CCeEecccHHHHHHhcCC---------------HHHHHHHHHHHcCCCCC
Confidence            58899999999999999999874    2  346688999887643100               000111111     121


Q ss_pred             hHHHHHHHHHHHHHHHHHHH--cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcC----C
Q 009432          260 PEMEEAYRSSMLKAFTRTLD--EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVH----G  332 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk--~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih----~  332 (535)
                      .++   ...    .+...|.  .+.  -+|||+...+..+...|..++.+.+..+ .++++.+ +.++|++|-..    .
T Consensus        63 d~l---~~~----~~~~~l~~~~~~--g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~-~~~~l~~Rl~~R~r~d  132 (183)
T PRK14531         63 DAL---VLA----IVESQLKALNSG--GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLEL-DDAVLIERLLARGRAD  132 (183)
T ss_pred             HHH---HHH----HHHHHHhhccCC--cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEEC-CHHHHHHHhhcCCCCC
Confidence            111   111    1222222  233  5788999999999999988898888765 3677777 67777776432    4


Q ss_pred             CCHHHHHHHhhcccc
Q 009432          333 FTLDDIERMAGQWEE  347 (535)
Q Consensus       333 VpeEvIe~M~krfE~  347 (535)
                      -++++|.+-.+.|+.
T Consensus       133 D~~e~i~~Rl~~y~~  147 (183)
T PRK14531        133 DNEAVIRNRLEVYRE  147 (183)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            556676665565554

>PRK14532 adenylate kinase; Provisional

Probab=98.96  E-value=3.6e-09  Score=100.13  Aligned_cols=119  Identities=20%  Similarity=0.177  Sum_probs=74.2

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-h-ccCchHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-E-YCYEPEM  262 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-e-y~y~~e~  262 (535)
                      .|+|.|+|||||||+|+.|++.+    |  ...++.||+++.....-  .        ..+ +.+ +++. . -.+..++
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~----g--~~~is~~d~lr~~~~~~--~--------~~~-~~~-~~~~~~g~~~~~~~   63 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEER----G--MVQLSTGDMLRAAIASG--S--------ELG-QRV-KGIMDRGELVSDEI   63 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc----C--CeEEeCcHHHHHHHHcC--C--------HHH-HHH-HHHHHCCCccCHHH
Confidence            48899999999999999999864    2  35679999988754210  0        000 001 1111 0 1122111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHh
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAAR  328 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~R  328 (535)
                         +...+.+.+ ..+..+.  .+|+|+...+..++..|.++++..|..+ .+|.|.+ +.+++++|
T Consensus        64 ---~~~~~~~~~-~~~~~~~--g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v-~~~~~~~R  123 (188)
T PRK14532         64 ---VIALIEERL-PEAEAAG--GAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKV-DDEALIER  123 (188)
T ss_pred             ---HHHHHHHHH-hCcCccC--cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHH
Confidence               111111111 2223455  7899999999999999999998888766 6788887 66766665

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.94  E-value=7.4e-09  Score=99.35  Aligned_cols=127  Identities=21%  Similarity=0.108  Sum_probs=74.0

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      .||+|-|.+.|||||+|+.|.+.+.   . ....++.|.++.....+.....    .|+.-..        +.-......
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~---~-p~~~l~~D~f~~~~~~~~~~~~----~g~~~~~--------~~~~~~~~~   65 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLP---E-PWLHLSVDTFVDMMPPGRYRPG----DGLEPAG--------DRPDGGPLF   65 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSS---S--EEEEEHHHHHHHS-GGGGTST----TSEEEET--------TSEEE-HHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCc---C-CeEEEecChHHhhcCcccccCC----ccccccc--------cCCchhHHH
Confidence            4899999999999999999998752   2 2246688877664322110000    0000000        000001223


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHH-HHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFW-ATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~-~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ...+..+...+..+++.|.  .||||.++....+...++ ++..  |+.|++|.+.| +++++.+|...
T Consensus        66 ~~~~~~~~~~iaa~a~aG~--~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~C-pleil~~RE~~  129 (174)
T PF07931_consen   66 RRLYAAMHAAIAAMARAGN--NVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRC-PLEILERRERA  129 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTT---EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC--CEEEecCccCcHHHHHHHHHHhC--CCceEEEEEEC-CHHHHHHHHHh
Confidence            3445566666777888998  999999998877645554 4443  89999999998 78888888764

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=98.92  E-value=3.2e-09  Score=111.72  Aligned_cols=148  Identities=18%  Similarity=0.158  Sum_probs=99.6

Q ss_pred             CCCCCCCCCCCcCCCCCCCCC-cccchh-hhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC
Q 009432          143 PMQYPGESHLFPLRQLSPDKP-KVVNAL-HLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM  220 (535)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~p-~~v~~~-~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~  220 (535)
                      .||+++....|   .++.++| ++|.-. .++.   .+.. ...+|+|+|+|||||||+|+.....   ++  + .++..
T Consensus       234 efF~g~~~~~~---~~~~fdp~n~i~~~t~~~~---~~~~-~~eiV~~vgfp~sGks~f~a~~~~~---~~--y-~~vn~  300 (422)
T KOG2134|consen  234 EFFLGVGVVTW---NSPGFDPKNVISRATSLCL---KLDG-HGEIVVAVGFPGSGKSTFAAKRVVP---NG--Y-KIVNA  300 (422)
T ss_pred             HHhcccccccc---CCCCCCchhHHhhhcchhc---ccCC-CCcEEEEEecCCCCcchhhhhhccc---Cc--e-eEeec
Confidence            46777666667   5555577 333322 2221   1212 2389999999999999999876532   21  1 12121


Q ss_pred             CceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHH
Q 009432          221 DDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQ  300 (535)
Q Consensus       221 DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~  300 (535)
                      |        -         .                        ..++.|+.++.++|+.|.  .||+|+||.+.+.|..
T Consensus       301 d--------~---------l------------------------g~~~~C~~~~~e~l~~~~--sVvidnt~pd~~sr~~  337 (422)
T KOG2134|consen  301 D--------T---------L------------------------GTPQNCLLANAEALKHGK--SVVIDNTNPDAESRKY  337 (422)
T ss_pred             c--------c---------C------------------------CCchhhHHHHHHHhhccc--EEeeCCCCcchHHHHH
Confidence            1        0         0                        145688899999999999  9999999999999999


Q ss_pred             HHHHHhhcCceEEEEEEecCCHHHHHHhhcC----------CCCHHHHHHHhhccccC
Q 009432          301 FWATAKRSGYEVYILEATYKDPAGCAARNVH----------GFTLDDIERMAGQWEEA  348 (535)
Q Consensus       301 f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----------~VpeEvIe~M~krfE~~  348 (535)
                      |+++|++.++.+.++++.++  ++..+.|..          ...+.++..+.++|+.+
T Consensus       338 ~~~~a~e~~~p~rcf~~~~s--~eq~~hn~~fR~~~~~~~~~~~dm~~~~~k~kf~~p  393 (422)
T KOG2134|consen  338 YLDCATEREIPIRCFEMNSS--VEQAQHNNRFRELSDSVKDSGSDMVFNSEKSKFQKP  393 (422)
T ss_pred             HhhhHHHhCccceeeeeccH--HHhhhccccchhhccchhcccccceeehhhccccCc
Confidence            99999999999999999863  333343332          34445555566666653

>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]

Probab=98.92  E-value=5e-09  Score=112.12  Aligned_cols=153  Identities=22%  Similarity=0.346  Sum_probs=109.6

Q ss_pred             CCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccC
Q 009432          179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCY  258 (535)
Q Consensus       179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y  258 (535)
                      ....+.+|+|+|+|++|||+++.+|.+++.|. |..+.+++..+|++........                     +.+|
T Consensus        24 ~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~-~~~tk~fn~g~yrr~~~~~~~s---------------------~~ff   81 (438)
T KOG0234|consen   24 FMGSKLVIVMVGLPARGKTYISSKLTRYLNWL-GVNTKVFNVGEYRREAVKKVDS---------------------EPFF   81 (438)
T ss_pred             ccCCceEEEEecCCccCcchhhhhHHHHHHhh-ccccccccHHHHHHHHhccccc---------------------cccc
Confidence            45678999999999999999999999998876 4567788888887765432110                     0122


Q ss_pred             chHHHH------HHHHHHHHHHHHHHH--cCCceEEEEeCCCCCHHHHHHHHHHHh-hcCceEEEEEEecCCHHHHHHhh
Q 009432          259 EPEMEE------AYRSSMLKAFTRTLD--EGNFTIVIVDDRNLRVADFAQFWATAK-RSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       259 ~~e~ee------~~~q~llk~akkaLk--~G~f~~VIVDaTN~~~~~R~~f~~LAr-~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                      .++..+      .....++..+...|.  .|.  ++|.|+||.++..|+.++.+|+ +.+++|+||+..|+|+ ..+.+|
T Consensus        82 ~p~n~~~~~lr~~~a~~~l~D~~~~l~~~~g~--vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~-~ii~~N  158 (438)
T KOG0234|consen   82 LPDNAEASKLRKQLALLALNDLLHFLIKENGQ--VAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDP-NLINNN  158 (438)
T ss_pred             ccCChhhhhhhHHHHHHHhhhHHHHhhccCCc--eEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCc-hhHHhh
Confidence            222111      111222233344443  455  9999999999999999999996 8999999999998654 334555


Q ss_pred             cC-----------CCCHHHHHHHhhccccCCccceeec
Q 009432          330 VH-----------GFTLDDIERMAGQWEEAPTLYLQLD  356 (535)
Q Consensus       330 ih-----------~VpeEvIe~M~krfE~~p~~y~~lD  356 (535)
                      +.           ...++.++.+.++.+.....|..+|
T Consensus       159 I~~~~~~spdy~~~~~e~a~~dfl~ri~~ye~~YePld  196 (438)
T KOG0234|consen  159 IREVKHVSPDYKGKDQEEALKDFLKRIRNYEKYYEPLD  196 (438)
T ss_pred             hhhhhhcCCCcCCCCHHHHHHHHHHHHHhhhhccCcCC
Confidence            43           3447788888888888888998888

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.83  E-value=8.2e-08  Score=91.59  Aligned_cols=132  Identities=22%  Similarity=0.129  Sum_probs=75.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      .+|+|+|++||||||+++.|...+    +  ...+..|++.......                    +....+.+.....
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l----~--~~~i~gd~~~~~~~~r--------------------~~~~g~~~~~~~~   57 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALF----S--AKFIDGDDLHPAKNID--------------------KMSQGIPLTDEDR   57 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhc----C--CEEECCcccCCHhHHH--------------------HHhcCCCCCcccc
Confidence            478999999999999999999864    1  2345556543211000                    0000011111110


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh----hcCCCCHHHHH
Q 009432          264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR----NVHGFTLDDIE  339 (535)
Q Consensus       264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R----Nih~VpeEvIe  339 (535)
                      ..+...+...+...++.+. ..+|+ +++++..+|.    ++++.+..+.+|+|.+ +.++|.+|    ..+..+.+++.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~-~g~iv-~s~~~~~~R~----~~r~~~~~~~~v~l~a-~~~~l~~Rl~~R~~~~~~~~vl~  130 (176)
T PRK09825         58 LPWLERLNDASYSLYKKNE-TGFIV-CSSLKKQYRD----ILRKSSPNVHFLWLDG-DYETILARMQRRAGHFMPPDLLQ  130 (176)
T ss_pred             hHHHHHHHHHHHHHHhcCC-CEEEE-EEecCHHHHH----HHHhhCCCEEEEEEeC-CHHHHHHHHhcccCCCCCHHHHH
Confidence            0111111111211223222 13455 8888766665    6678888999999998 66666554    44577888999


Q ss_pred             HHhhccccC
Q 009432          340 RMAGQWEEA  348 (535)
Q Consensus       340 ~M~krfE~~  348 (535)
                      .+.+.||++
T Consensus       131 ~Q~~~~e~~  139 (176)
T PRK09825        131 SQFDALERP  139 (176)
T ss_pred             HHHHHcCCC
Confidence            888888853

>KOG2400 consensus Nuclear protein ZAP [Defense mechanisms]

Probab=98.81  E-value=1.1e-09  Score=88.62  Aligned_cols=52  Identities=21%  Similarity=0.369  Sum_probs=43.2

Q ss_pred             hhhhhhhHHHH--------hhCCceEEcccccCCcccceecccccccceeEEccCCCcccchhhhh
Q 009432          454 SNALSGLFQLY--------VKEGKSVHWGDQVGDTGFSIGAAKKSKMLSLVIGPGAGYNLVSLAAV  511 (535)
Q Consensus       454 ~~~l~~~~q~y--------~~~~K~v~W~D~~~~~gf~i~~~~~~~~~~~vig~~~~~~~~~~~~~  511 (535)
                      +.+|++++|..        .+|||||||||++|+     +.+||||+||||||+- .+|-.-.|-+
T Consensus         6 ttsmadylqledwkppttsdngkkrvrwadieek-----rsqkkmraigfvvgqt-dwnrmmdpna   65 (82)
T KOG2400|consen    6 TTSMADYLQLEDWKPPTTSDNGKKRVRWADIEEK-----RSQKKMRAIGFVVGQT-DWNRMMDPNA   65 (82)
T ss_pred             cchHHHHHhhhccCCCCcCCCcceeeeehhhHHH-----HHHHhhhhheeEeecc-cHhhhcCCCc
Confidence            45899999975        479999999999999     9999999999999984 5665555544

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.78  E-value=1.5e-07  Score=88.49  Aligned_cols=127  Identities=15%  Similarity=0.044  Sum_probs=70.4

Q ss_pred             EccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHHHHH
Q 009432          189 RGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRS  268 (535)
Q Consensus       189 ~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~q  268 (535)
                      .|++||||||||+.|...+    +  ...+..|.+.......                    +....+.+.......+..
T Consensus         1 ~G~sGsGKSTla~~la~~l----~--~~~~~~d~~~~~~~~~--------------------~~~~g~~~~~~~~~~~~~   54 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQL----H--AAFLDGDFLHPRRNIE--------------------KMASGEPLNDDDRKPWLQ   54 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHh----C--CeEEeCccCCchhhhc--------------------cccCCCCCChhhHHHHHH
Confidence            4999999999999999875    2  2344555432111000                    000011121111111111


Q ss_pred             HHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc----CCCCHHHHHHHhhc
Q 009432          269 SMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV----HGFTLDDIERMAGQ  344 (535)
Q Consensus       269 ~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi----h~VpeEvIe~M~kr  344 (535)
                      .+...+...+..+. ..||+ +++..+.+|    +++++.++.+.+|+|.+ +.++|.+|-.    +-.+.+++..+...
T Consensus        55 ~~~~~~~~~~~~~~-~~viv-~s~~~~~~r----~~~~~~~~~~~~v~l~a-~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~  127 (163)
T PRK11545         55 ALNDAAFAMQRTNK-VSLIV-CSALKKHYR----DLLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKTQMLVTQFET  127 (163)
T ss_pred             HHHHHHHHHHHcCC-ceEEE-EecchHHHH----HHHHccCCCEEEEEEEC-CHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence            22222222223333 14555 899876655    56666888999999998 7887776543    23457777777777


Q ss_pred             cccC
Q 009432          345 WEEA  348 (535)
Q Consensus       345 fE~~  348 (535)
                      ||++
T Consensus       128 ~ep~  131 (163)
T PRK11545        128 LQEP  131 (163)
T ss_pred             cCCC
Confidence            7754

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.78  E-value=5.2e-08  Score=91.16  Aligned_cols=122  Identities=20%  Similarity=0.186  Sum_probs=70.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-hccCchH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-EYCYEPE  261 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-ey~y~~e  261 (535)
                      ..+|+|.|.|||||||+|+.|++.+    |  ..+++.+|+++......  .        ..+ +.+ +.+. ...+.+ 
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~----g--~~~~~~g~~~~~~~~~~--~--------~~~-~~~-~~~~~~~~~~~-   63 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY----G--FTHLSTGDLLRAEVASG--S--------ERG-KQL-QAIMESGDLVP-   63 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh----C--CcEEeHHHHHHHHHhcC--C--------HHH-HHH-HHHHHCCCCCC-
Confidence            4589999999999999999999864    2  24568888877643210  0        000 111 1111 111221 


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV  330 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi  330 (535)
                       .....+.+...+...+..|.  .||+|+......+...   +.+.......+|++.+ +.++|++|-.
T Consensus        64 -~~~~~~~l~~~~~~~~~~~~--~~i~dg~~~~~~q~~~---~~~~~~~~~~vi~l~~-~~~~~~~Rl~  125 (188)
T TIGR01360        64 -LDTVLDLLKDAMVAALGTSK--GFLIDGYPREVKQGEE---FERRIGPPTLVLYFDC-SEDTMVKRLL  125 (188)
T ss_pred             -HHHHHHHHHHHHHcccCcCC--eEEEeCCCCCHHHHHH---HHHcCCCCCEEEEEEC-CHHHHHHHHH
Confidence             12233344444555566777  8999997655444433   3344444556778887 6777777653

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.72  E-value=8.7e-08  Score=93.38  Aligned_cols=127  Identities=14%  Similarity=0.157  Sum_probs=69.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCC--ccCCcchhhhh---hhc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGS--LRSKKPVTKMV---MEY  256 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~--~r~kk~l~kkv---~ey  256 (535)
                      .+.+|+++|+|||||||+|+.|++.+    + . .++...|+++....+....+.. ...+  +. ++-+....   ...
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~----~-~-~~~~~~D~~r~~~r~~~~~~p~-l~~s~~~a-~~~~~~~~~~~~~~   73 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHR----A-I-DIVLSGDYLREFLRPYVDDEPV-LAKSVYDA-WEFYGSMTDENIVK   73 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc----C-C-eEEehhHHHHHHHHHhcCCCCC-cccccHHH-HHHcCCcchhHHHH
Confidence            46799999999999999999999864    2 2 3456666766554321110000 0000  00 00000000   000


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHH
Q 009432          257 CYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGC  325 (535)
Q Consensus       257 ~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~c  325 (535)
                      .|... ...++..+...+..++.+|.  .||||+++.....+.    .+...+.  .++++.+++.++.
T Consensus        74 ~y~~q-~~~v~~~L~~va~~~l~~G~--sVIvEgv~l~p~~~~----~~~~~~v--~~i~l~v~d~e~l  133 (197)
T PRK12339         74 GYLDQ-ARAIMPGINRVIRRALLNGE--DLVIESLYFHPPMID----ENRTNNI--RAFYLYIRDAELH  133 (197)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHcCC--CEEEEecCcCHHHHH----HHHhcCe--EEEEEEeCCHHHH
Confidence            11111 12345556667888999999  999999999987764    3334444  3344433455544

>PRK06696 uridine kinase; Validated

Probab=98.72  E-value=7.8e-09  Score=101.34  Aligned_cols=46  Identities=22%  Similarity=0.330  Sum_probs=37.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ..+++|.|+|.+||||||||++|++.+... |....++++|||+...
T Consensus        20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~-g~~v~~~~~Ddf~~~~   65 (223)
T PRK06696         20 TRPLRVAIDGITASGKTTFADELAEEIKKR-GRPVIRASIDDFHNPR   65 (223)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeccccccCCH
Confidence            467899999999999999999999987544 3445566899998754

>PRK07667 uridine kinase; Provisional

Probab=98.69  E-value=1.9e-07  Score=89.88  Aligned_cols=46  Identities=26%  Similarity=0.442  Sum_probs=38.1

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ..+.+|.|+|.+||||||||+.|.+.+... |..+.+++.|||+...
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~-~~~~~~i~~Dd~~~~~   60 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENMKQE-GIPFHIFHIDDYIVER   60 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEEcCcccchh
Confidence            445899999999999999999999987544 4456788999988754

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.68  E-value=1.1e-07  Score=89.51  Aligned_cols=118  Identities=19%  Similarity=0.128  Sum_probs=71.5

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA  265 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~  265 (535)
                      |+|+|.|||||||+|+.|++.+    +  ..+++.||+++.......          . ..+.+...+..-.+.+.    
T Consensus         2 I~i~G~pGsGKst~a~~La~~~----~--~~~i~~~~l~~~~~~~~~----------~-~~~~~~~~~~~g~~~~~----   60 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY----G--LPHISTGDLLREEIASGT----------E-LGKKAKEYIDSGKLVPD----   60 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc----C--CeEEECcHHHHHHHhcCC----------h-HHHHHHHHHHcCCccCH----
Confidence            7999999999999999999864    2  457799998876532100          0 00000000000001110    


Q ss_pred             HHHHHHHHHHHHHHc---CCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          266 YRSSMLKAFTRTLDE---GNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       266 ~~q~llk~akkaLk~---G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                        ..+.+.+...|..   +.  .+|||+...+..++..|.++....+....+|.+.+ +.++|++|-
T Consensus        61 --~~~~~l~~~~l~~~~~~~--~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~-~~~~~~~Rl  122 (194)
T cd01428          61 --EIVIKLLKERLKKPDCKK--GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDV-PDEVLIERI  122 (194)
T ss_pred             --HHHHHHHHHHHhcccccC--CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHH
Confidence              1222334444443   44  78999977777888877777765556667888887 677777764

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK06547 hypothetical protein; Provisional

Probab=98.68  E-value=9.3e-08  Score=91.21  Aligned_cols=142  Identities=15%  Similarity=0.110  Sum_probs=80.9

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh----
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME----  255 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e----  255 (535)
                      +..+.+|+++|.+||||||||+.|++.+    +  ..+++.|+|+..... +.           ...+.+...+..    
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~----~--~~~~~~d~~~~~~~~-~~-----------~~~~~l~~~~l~~g~~   73 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAART----G--FQLVHLDDLYPGWHG-LA-----------AASEHVAEAVLDEGRP   73 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHh----C--CCeecccceeccccc-CC-----------hHHHHHHHHHHhCCCC
Confidence            4557799999999999999999999864    2  347788998754211 00           000000000000    


Q ss_pred             --ccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCC
Q 009432          256 --YCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGF  333 (535)
Q Consensus       256 --y~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~V  333 (535)
                        +.|+-...     ....  ...+..+.  +|||+++.....   .+.+++.+ +..+.+|++.+ +.++|++|-...-
T Consensus        74 ~~~~yd~~~~-----~~~~--~~~l~~~~--vVIvEG~~al~~---~~r~~~d~-~g~v~~I~ld~-~~~vr~~R~~~Rd  139 (172)
T PRK06547         74 GRWRWDWANN-----RPGD--WVSVEPGR--RLIIEGVGSLTA---ANVALASL-LGEVLTVWLDG-PEALRKERALARD  139 (172)
T ss_pred             ceecCCCCCC-----CCCC--cEEeCCCC--eEEEEehhhccH---HHHHHhcc-CCCEEEEEEEC-CHHHHHHHHHhcC
Confidence              00000000     0000  00122344  899999876533   34555554 44467888886 7888888776543


Q ss_pred             CHHHHHHHhhccccCCccceee
Q 009432          334 TLDDIERMAGQWEEAPTLYLQL  355 (535)
Q Consensus       334 peEvIe~M~krfE~~p~~y~~l  355 (535)
                      ..  ...++.+|.+....|..-
T Consensus       140 ~~--~~~~~~~w~~~e~~~~~~  159 (172)
T PRK06547        140 PD--YAPHWEMWAAQEERHFAR  159 (172)
T ss_pred             ch--hhHHHHHHHHHHHHHHhc
Confidence            33  777788888877766543

>PRK00279 adk adenylate kinase; Reviewed

Probab=98.67  E-value=1.8e-07  Score=91.01  Aligned_cols=118  Identities=19%  Similarity=0.202  Sum_probs=68.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      .|+|.|.|||||||+|+.|++.+    +  ..+++.+|+++.......          ..+ +.+...+......+  ..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~----~--~~~is~~dl~r~~~~~~~----------~~~-~~~~~~~~~g~~~p--~~   62 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKY----G--IPHISTGDMLRAAVKAGT----------ELG-KEAKSYMDAGELVP--DE   62 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CcEEECCccHHHHHhccc----------hHH-HHHHHHHHcCCcCC--HH
Confidence            48899999999999999999874    2  356788888886543100          000 11110000000101  01


Q ss_pred             HHHHHHHHHHHHHHHc---CCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHh
Q 009432          265 AYRSSMLKAFTRTLDE---GNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAAR  328 (535)
Q Consensus       265 ~~~q~llk~akkaLk~---G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~R  328 (535)
                          .+.+.+...|..   +.  -+|||+...+..+...|.+++...+..+ .+|.+.+ +.+++++|
T Consensus        63 ----~~~~~i~~~l~~~~~~~--g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~-~~~~~~~R  123 (215)
T PRK00279         63 ----IVIGLVKERLAQPDCKN--GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDV-PDEELVER  123 (215)
T ss_pred             ----HHHHHHHHHHhccCccC--CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEEC-CHHHHHHH
Confidence                112222333332   33  6899997667777777777777777765 6788887 55555554

>PLN02200 adenylate kinase family protein

Probab=98.64  E-value=3.2e-07  Score=91.50  Aligned_cols=138  Identities=15%  Similarity=0.169  Sum_probs=76.3

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc-cC
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY-CY  258 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey-~y  258 (535)
                      +..+.+|+|+|.|||||||+|+.|++++    |  ...++.+|+++.......+           ....+...+... .+
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~----g--~~his~gdllR~~i~~~s~-----------~~~~i~~~~~~G~~v  102 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVETF----G--FKHLSAGDLLRREIASNSE-----------HGAMILNTIKEGKIV  102 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh----C--CeEEEccHHHHHHHhccCh-----------hHHHHHHHHHcCCCC
Confidence            5567899999999999999999999864    2  3467899998865432100           000111100000 11


Q ss_pred             chHHHHHHHHHHHHHHHHHHH--cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-----
Q 009432          259 EPEMEEAYRSSMLKAFTRTLD--EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH-----  331 (535)
Q Consensus       259 ~~e~ee~~~q~llk~akkaLk--~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih-----  331 (535)
                      ..++       +...+.+.|.  .+.  .+|||+...+..++..|.+++..  ..-.+|.+.+ +.+++++|-..     
T Consensus       103 p~e~-------~~~~l~~~l~~~~~~--~~ILDG~Prt~~q~~~l~~~~~~--~pd~vi~Ld~-~~e~~~~Rl~~R~~~r  170 (234)
T PLN02200        103 PSEV-------TVKLIQKEMESSDNN--KFLIDGFPRTEENRIAFERIIGA--EPNVVLFFDC-PEEEMVKRVLNRNQGR  170 (234)
T ss_pred             cHHH-------HHHHHHHHHhcCCCC--eEEecCCcccHHHHHHHHHHhcc--CCCEEEEEEC-CHHHHHHHHHcCcCCC
Confidence            1111       1112222332  234  68999987777777766655521  1225666776 56666555221     


Q ss_pred             -CCCHHHHHHHhhccc
Q 009432          332 -GFTLDDIERMAGQWE  346 (535)
Q Consensus       332 -~VpeEvIe~M~krfE  346 (535)
                       .-+.+.+++..+.|.
T Consensus       171 ~dd~~e~~~~Rl~~y~  186 (234)
T PLN02200        171 VDDNIDTIKKRLKVFN  186 (234)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence             223455555555444

>TIGR01351 adk adenylate kinases

Probab=98.63  E-value=1.8e-07  Score=90.73  Aligned_cols=115  Identities=21%  Similarity=0.187  Sum_probs=64.5

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA  265 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~  265 (535)
                      |+|.|.|||||||+|+.|++.+    |  ..+++.+|+++......  ..    .    + ..+...+....+.++  + 
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~----g--~~~is~gdllr~~~~~~--~~----~----~-~~~~~~~~~g~~vp~--~-   61 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY----G--LPHISTGDLLRAEIKAG--TP----L----G-KKAKEYMEKGELVPD--E-   61 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc----C--CCeeehhHHHHHhhccc--cH----H----H-HHHHHHHhCCCCCCH--H-
Confidence            7889999999999999999764    2  35678999887654310  00    0    0 001000001111111  1 


Q ss_pred             HHHHHHHHHHHHHHc----CCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432          266 YRSSMLKAFTRTLDE----GNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR  328 (535)
Q Consensus       266 ~~q~llk~akkaLk~----G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R  328 (535)
                         .+.+.+...|..    +.  .+|||+..-+..+...|.+++..  ....+|.+.+ +.++|++|
T Consensus        62 ---~~~~l~~~~i~~~~~~~~--~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~-~~~~~~~R  120 (210)
T TIGR01351        62 ---IVNQLVKERLTQNQDNEN--GFILDGFPRTLSQAEALDALLKE--KIDAVIELDV-PDEELVER  120 (210)
T ss_pred             ---HHHHHHHHHHhcCcccCC--cEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEEC-CHHHHHHH
Confidence               122223333333    44  78999966667777666665542  2335777776 55666554

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.57  E-value=3.4e-07  Score=86.62  Aligned_cols=122  Identities=20%  Similarity=0.142  Sum_probs=80.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      .+.++|+|+||+||||||+|-+|.+.+.+.| ....++.-|.++.-....         +||                ..
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~qrg-kl~Y~LDGDNvRhGLN~D---------L~F----------------~a   82 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQRG-KLTYILDGDNVRHGLNKD---------LGF----------------KA   82 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHhcC-ceEEEecCcccccccccc---------cCc----------------ch
Confidence            3456999999999999999999999988765 456677777766543210         121                11


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCC
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGF  333 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~V  333 (535)
                      +.......++-+.++...+.|.  +.|-.-...++.+|..-..+..+.  .+.-|++++ ++++|.+|.-++.
T Consensus        83 ~dR~ENIRRigeVaKLFADag~--iciaSlISPYR~dRdacRel~~~~--~FiEvfmdv-pl~vcE~RDPKGL  150 (207)
T KOG0635|consen   83 EDRNENIRRIGEVAKLFADAGV--ICIASLISPYRKDRDACRELLPEG--DFIEVFMDV-PLEVCEARDPKGL  150 (207)
T ss_pred             hhhhhhHHHHHHHHHHHhccce--eeeehhcCchhccHHHHHHhccCC--CeEEEEecC-cHHHhhccCchhH
Confidence            1111122233344455556776  677777778888888777777665  344455555 7899999886644

>PRK01184 hypothetical protein; Provisional

Probab=98.56  E-value=3.5e-07  Score=86.35  Aligned_cols=38  Identities=34%  Similarity=0.422  Sum_probs=28.5

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~  228 (535)
                      ++|+|+|+|||||||+|+. ++.+    |  ..+++.||+++...
T Consensus         2 ~~i~l~G~~GsGKsT~a~~-~~~~----g--~~~i~~~d~lr~~~   39 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSKI-AREM----G--IPVVVMGDVIREEV   39 (184)
T ss_pred             cEEEEECCCCCCHHHHHHH-HHHc----C--CcEEEhhHHHHHHH
Confidence            4899999999999999984 4332    2  34678888887654

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.52  E-value=5.1e-07  Score=83.03  Aligned_cols=40  Identities=28%  Similarity=0.342  Sum_probs=31.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      +.+.+|+|+|+|||||||+|+.|++.+    +  ..+++.|+++..
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l----~--~~~~d~d~~~~~   41 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRL----G--YDFIDTDHLIEA   41 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHh----C--CCEEEChHHHHH
Confidence            456799999999999999999999875    2  245577776543

>PRK02496 adk adenylate kinase; Provisional

Probab=98.52  E-value=7.2e-07  Score=84.36  Aligned_cols=137  Identities=18%  Similarity=0.137  Sum_probs=78.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      -|+|.|.|||||||+|+.|++.+    +  ..+++.||+++.......      ..    + ..+...+....+.++  +
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~----~--~~~i~~~~~~~~~~~~~~------~~----g-~~~~~~~~~g~~~~~--~   63 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHL----H--IPHISTGDILRQAIKEQT------PL----G-IKAQGYMDKGELVPD--Q   63 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CcEEEhHHHHHHHHhccC------hh----H-HHHHHHHHCCCccCH--H
Confidence            47889999999999999999864    2  346688888876542100      00    0 000000000111111  1


Q ss_pred             HHHHHHHHHHHHHHH---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCc-eEEEEEEecCCHHHHHHhhc----CCCCHH
Q 009432          265 AYRSSMLKAFTRTLD---EGNFTIVIVDDRNLRVADFAQFWATAKRSGY-EVYILEATYKDPAGCAARNV----HGFTLD  336 (535)
Q Consensus       265 ~~~q~llk~akkaLk---~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~-~V~vIe~~~~d~e~ci~RNi----h~VpeE  336 (535)
                       .   ....+...|.   ...  .+|+|+.-.+..+...+..+++..+. ...+|.+.+ +.++|.+|-.    ...+++
T Consensus        64 -~---~~~~l~~~l~~~~~~~--g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~-~~~~~~~Rl~~R~~~dd~~~  136 (184)
T PRK02496         64 -L---VLDLVQERLQQPDAAN--GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDV-PDDVVVERLLARGRKDDTEE  136 (184)
T ss_pred             -H---HHHHHHHHHhCcCccC--CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHhcCCCCCCCHH
Confidence             1   1122223332   223  58999876666676666666666654 346677776 6777777643    245678


Q ss_pred             HHHHHhhcccc
Q 009432          337 DIERMAGQWEE  347 (535)
Q Consensus       337 vIe~M~krfE~  347 (535)
                      .+++..+.|+.
T Consensus       137 ~~~~r~~~y~~  147 (184)
T PRK02496        137 VIRRRLEVYRE  147 (184)
T ss_pred             HHHHHHHHHHH
Confidence            88877777775

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.51  E-value=1.1e-06  Score=84.49  Aligned_cols=137  Identities=15%  Similarity=0.191  Sum_probs=80.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH-HH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE-ME  263 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e-~e  263 (535)
                      -|++.|.|||||||+|+.|++.+    +  ...++.+|+++.....-               .++-+++-.|.-..+ +.
T Consensus         2 riiilG~pGaGK~T~A~~La~~~----~--i~hlstgd~~r~~~~~~---------------t~lg~~~k~~i~~g~lv~   60 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL----G--LPHLDTGDILRAAIAER---------------TELGEEIKKYIDKGELVP   60 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh----C--CcEEcHhHHhHhhhccC---------------ChHHHHHHHHHHcCCccc
Confidence            37899999999999999999874    2  23458889988764310               011111111111111 11


Q ss_pred             HHHHHHHHH-HHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcCCC-----CHH
Q 009432          264 EAYRSSMLK-AFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVHGF-----TLD  336 (535)
Q Consensus       264 e~~~q~llk-~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih~V-----peE  336 (535)
                      ......+++ .+..+  .... .+|+|+---+..+.+.+..+..++|.+. .++.|.+ +.+..+.|-....     ..+
T Consensus        61 d~i~~~~v~~rl~~~--d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~-~~~~~~~r~~~r~~r~dd~~~  136 (178)
T COG0563          61 DEIVNGLVKERLDEA--DCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDV-PEELLLERLLGRRVREDDNEE  136 (178)
T ss_pred             hHHHHHHHHHHHHhh--cccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeC-CHHHHHHHHhCccccccCCHH
Confidence            112222222 22222  2222 6899997667777777777777777554 6677776 4477777766543     566


Q ss_pred             HHHHHhhccc
Q 009432          337 DIERMAGQWE  346 (535)
Q Consensus       337 vIe~M~krfE  346 (535)
                      .+++....|.
T Consensus       137 ~~~~R~~~y~  146 (178)
T COG0563         137 TVKKRLKVYH  146 (178)
T ss_pred             HHHHHHHHHH
Confidence            7666665555

>PTZ00301 uridine kinase; Provisional

Probab=98.50  E-value=1.3e-06  Score=86.16  Aligned_cols=46  Identities=22%  Similarity=0.259  Sum_probs=35.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCC-cEEEeCCceeeeh
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDA-PRIHSMDDYFMTE  227 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~-~rIlS~DDyfr~~  227 (535)
                      +.+||.|.|.|||||||||+.|.+.+....+.. +.+++.|+|+...
T Consensus         2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~   48 (210)
T PTZ00301          2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQ   48 (210)
T ss_pred             CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCc
Confidence            458999999999999999999987764433333 3478899988653

>PRK13946 shikimate kinase; Provisional

Probab=98.49  E-value=8.9e-07  Score=84.43  Aligned_cols=128  Identities=17%  Similarity=0.206  Sum_probs=71.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      .+..|+|+|++||||||+|+.|++.+    | . .++..|.++.... +.             .-.++...     |.  
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~L----g-~-~~id~D~~~~~~~-g~-------------~~~e~~~~-----~g--   61 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATML----G-L-PFLDADTEIERAA-RM-------------TIAEIFAA-----YG--   61 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc----C-C-CeECcCHHHHHHh-CC-------------CHHHHHHH-----HC--
Confidence            34579999999999999999999875    2 2 2556675433221 10             00001100     11  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeC--CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CC----
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDD--RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GF----  333 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDa--TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~V----  333 (535)
                       +..++....+.+...+..+.  .||..+  ++.....|..+.    ..+   .+|+|.+ +++.+++|...  ..    
T Consensus        62 -e~~~~~~e~~~l~~l~~~~~--~Vi~~ggg~~~~~~~r~~l~----~~~---~~v~L~a-~~e~~~~Rl~~r~~rp~~~  130 (184)
T PRK13946         62 -EPEFRDLERRVIARLLKGGP--LVLATGGGAFMNEETRAAIA----EKG---ISVWLKA-DLDVLWERVSRRDTRPLLR  130 (184)
T ss_pred             -HHHHHHHHHHHHHHHHhcCC--eEEECCCCCcCCHHHHHHHH----cCC---EEEEEEC-CHHHHHHHhcCCCCCCcCC
Confidence             11122222333445555665  667663  566666555443    333   3467776 78888877653  21    


Q ss_pred             ---CHHHHHHHhhcccc
Q 009432          334 ---TLDDIERMAGQWEE  347 (535)
Q Consensus       334 ---peEvIe~M~krfE~  347 (535)
                         ..+.|+++++++.+
T Consensus       131 ~~~~~~~i~~~~~~R~~  147 (184)
T PRK13946        131 TADPKETLARLMEERYP  147 (184)
T ss_pred             CCChHHHHHHHHHHHHH
Confidence               24677777766664

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.46  E-value=1.5e-06  Score=94.71  Aligned_cols=135  Identities=19%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcccccc--ccccccCCccCCcchh-hhh--hhc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDS--DVSKSSGSLRSKKPVT-KMV--MEY  256 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~--~~sk~~g~~r~kk~l~-kkv--~ey  256 (535)
                      .+.+|+|+|++|+||||+|..|+.++    + ...+++.|.++.....-+...  +.-....++ .++.+. ...  ...
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~l----g-~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~-A~~~~~~~~~~~~~~  327 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRL----G-ITRIVSTDAVREVLRAMVSKDLLPTLHASTFN-AWRALLPPGEGLPAE  327 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc----C-CcEEeehhHHHHHHHhhcchhhccchhhchhh-HHhhccCcccccccc
Confidence            58999999999999999999999875    2 235778776654322111000  000000000 000000 000  000


Q ss_pred             cCchHHHHH-------HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432          257 CYEPEMEEA-------YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR  328 (535)
Q Consensus       257 ~y~~e~ee~-------~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R  328 (535)
                      .|....-..       +...+...+.+++++|.  +||||++++.+..+.    .+...+..+..++|.++|.++..+|
T Consensus       328 ~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~--SvIIEGVHl~P~~i~----~~~~~~~~~i~flv~isdeeeH~~R  400 (475)
T PRK12337        328 PTRAEVLRGFRDQVQQVAVGLGAIQERSAQEGT--SLVLEGVHLVPGYLR----HPYQAGALVVPMLVTLPDEALHRRR  400 (475)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--eEEEECCCCCHHHHH----HHHhcCCceEEEEEEECCHHHHHHH
Confidence            011111111       11223345688899999  999999999988754    5667777788788888787765543

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.46  E-value=2.9e-07  Score=103.22  Aligned_cols=8  Identities=13%  Similarity=0.426  Sum_probs=4.2

Q ss_pred             hhhhHHHH
Q 009432          457 LSGLFQLY  464 (535)
Q Consensus       457 l~~~~q~y  464 (535)
                      |-.|||+-
T Consensus      1043 mDslLeaL 1050 (1102)
T KOG1924|consen 1043 MDSLLEAL 1050 (1102)
T ss_pred             HHHHHHHH
Confidence            44556654

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.43  E-value=5.1e-06  Score=79.00  Aligned_cols=156  Identities=19%  Similarity=0.198  Sum_probs=99.4

Q ss_pred             CCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh-ccccccccccccCCccCCcchhhh
Q 009432          174 QPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV-EKVEDSDVSKSSGSLRSKKPVTKM  252 (535)
Q Consensus       174 ~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~-e~v~~~~~sk~~g~~r~kk~l~kk  252 (535)
                      +++....+.+-+|++.|..||||||++++|.+.+.      ...+..||+--... ++..       -|     ..+   
T Consensus         3 p~~~t~~~~k~~i~vmGvsGsGKSTigk~L~~~l~------~~F~dgDd~Hp~~NveKM~-------~G-----ipL---   61 (191)
T KOG3354|consen    3 PKHKTMGPFKYVIVVMGVSGSGKSTIGKALSEELG------LKFIDGDDLHPPANVEKMT-------QG-----IPL---   61 (191)
T ss_pred             CCCcccCCCceeEEEEecCCCChhhHHHHHHHHhC------CcccccccCCCHHHHHHHh-------cC-----CCC---
Confidence            34555667888999999999999999999998762      23446777643321 1100       00     000   


Q ss_pred             hhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHh------hcCceEEEEEEecCCHHHHH
Q 009432          253 VMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAK------RSGYEVYILEATYKDPAGCA  326 (535)
Q Consensus       253 v~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr------~~G~~V~vIe~~~~d~e~ci  326 (535)
                           -+.+...+ .+.+...+.+.|..|+  .||+-+..+++.+|.-+..-.+      .-..++.||.+.. +.++.+
T Consensus        62 -----nD~DR~pW-L~~i~~~~~~~l~~~q--~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~  132 (191)
T KOG3354|consen   62 -----NDDDRWPW-LKKIAVELRKALASGQ--GVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVIL  132 (191)
T ss_pred             -----CcccccHH-HHHHHHHHHHHhhcCC--eEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHH
Confidence                 11111221 2344455677778898  9999998888888876665333      1235678888876 667666


Q ss_pred             Hh----hcCCCCHHHHHHHhhccccCCc---cceeecCCC
Q 009432          327 AR----NVHGFTLDDIERMAGQWEEAPT---LYLQLDIKT  359 (535)
Q Consensus       327 ~R----Nih~VpeEvIe~M~krfE~~p~---~y~~lD~~s  359 (535)
                      +|    -.|-.+.+.++.++.-+|.+..   ..+.+|+.+
T Consensus       133 ~Rl~~R~gHFMp~~lleSQf~~LE~p~~~e~div~isv~~  172 (191)
T KOG3354|consen  133 KRLKKRKGHFMPADLLESQFATLEAPDADEEDIVTISVKT  172 (191)
T ss_pred             HHHhhcccccCCHHHHHHHHHhccCCCCCccceEEEeecc
Confidence            54    4568899999999998886532   244455544

>PRK07261 topology modulation protein; Provisional

Probab=98.43  E-value=1e-06  Score=83.55  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=27.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      -|+|+|.|||||||||++|.+.+    +  ..+++.|+++.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~----~--~~~i~~D~~~~   36 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY----N--CPVLHLDTLHF   36 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh----C--CCeEecCCEEe
Confidence            48999999999999999998764    2  23557787764

>PRK08233 hypothetical protein; Provisional

Probab=98.41  E-value=2.4e-06  Score=79.50  Aligned_cols=38  Identities=18%  Similarity=0.269  Sum_probs=30.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      .++|++.|.|||||||||+.|++.+    + ...+++.|+++.
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l----~-~~~~~~~d~~~~   40 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKL----K-NSKALYFDRYDF   40 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhC----C-CCceEEECCEEc
Confidence            5799999999999999999999875    1 135667777654

>PRK14528 adenylate kinase; Provisional

Probab=98.40  E-value=2.5e-06  Score=81.75  Aligned_cols=138  Identities=16%  Similarity=0.156  Sum_probs=75.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH-H
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM-E  263 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~-e  263 (535)
                      -|++.|.|||||||+|+.|++.+    +  ..+++.+|+++.....   +.            .+-.++..|.-..+. .
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~----~--~~~is~~~~lr~~~~~---~~------------~~g~~~~~~~~~g~lvp   61 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERL----S--IPQISTGDILREAVKN---QT------------AMGIEAKRYMDAGDLVP   61 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CCeeeCCHHHHHHhhc---CC------------HHHHHHHHHHhCCCccC
Confidence            47889999999999999998764    2  2466889998765421   00            000001111100000 0


Q ss_pred             HHHHHHHHHHHHHHHHcC-CceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcC--------CC
Q 009432          264 EAYRSSMLKAFTRTLDEG-NFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVH--------GF  333 (535)
Q Consensus       264 e~~~q~llk~akkaLk~G-~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih--------~V  333 (535)
                      ..   .+...+.+.|.+- .-.-+|||+--.+..+-..|.++....+..+ .+|.+.+ +.++|++|-..        .-
T Consensus        62 ~~---~~~~~~~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~-~~~~~~~Rl~~R~~~~gr~dd  137 (186)
T PRK14528         62 DS---VVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEV-PDGELLKRLLGRAEIEGRADD  137 (186)
T ss_pred             HH---HHHHHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHhcCccccCCCCC
Confidence            00   1112223333221 1126899995455666666777766655444 5777777 66666554321        34


Q ss_pred             CHHHHHHHhhcccc
Q 009432          334 TLDDIERMAGQWEE  347 (535)
Q Consensus       334 peEvIe~M~krfE~  347 (535)
                      ++|+|.+-...|..
T Consensus       138 ~~e~i~~Rl~~y~~  151 (186)
T PRK14528        138 NEATIKNRLDNYNK  151 (186)
T ss_pred             CHHHHHHHHHHHHH
Confidence            56666666655553

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.39  E-value=1.9e-06  Score=78.11  Aligned_cols=35  Identities=26%  Similarity=0.525  Sum_probs=28.1

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      |+|+|+|||||||+|+.|++++    + . ..++.|+++..
T Consensus         2 i~l~G~~GsGKstla~~la~~l----~-~-~~~~~d~~~~~   36 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL----G-L-PFVDLDELIEQ   36 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh----C-C-CEEEchHHHHH
Confidence            7899999999999999999875    2 2 35688877554

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.39  E-value=2.2e-06  Score=78.64  Aligned_cols=132  Identities=18%  Similarity=0.173  Sum_probs=76.2

Q ss_pred             EEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHHHH
Q 009432          188 LRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYR  267 (535)
Q Consensus       188 L~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~  267 (535)
                      |.|.|||||||+|+.|++.+    +  ...++.+|+.+......  .             .+-+++.+++-..+..  --
T Consensus         1 i~G~PgsGK~t~~~~la~~~----~--~~~is~~~llr~~~~~~--s-------------~~g~~i~~~l~~g~~v--p~   57 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRY----G--LVHISVGDLLREEIKSD--S-------------ELGKQIQEYLDNGELV--PD   57 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHH----T--SEEEEHHHHHHHHHHTT--S-------------HHHHHHHHHHHTTSS----H
T ss_pred             CcCCCCCChHHHHHHHHHhc----C--cceechHHHHHHHHhhh--h-------------HHHHHHHHHHHhhccc--hH
Confidence            57999999999999999874    2  45778888888764310  0             0011111111111110  00


Q ss_pred             HHHHHHHHHHHH---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcCCCCHHHHHHHhh
Q 009432          268 SSMLKAFTRTLD---EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVHGFTLDDIERMAG  343 (535)
Q Consensus       268 q~llk~akkaLk---~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih~VpeEvIe~M~k  343 (535)
                      +.+.+.+...|.   ...  -+|||+-=.+..+...|.++....+..+ .+|.+.| +.+.|++|-.. .+.+.|++-..
T Consensus        58 ~~v~~ll~~~l~~~~~~~--g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~-~~~~~~~R~~~-d~~~~i~~Rl~  133 (151)
T PF00406_consen   58 ELVIELLKERLEQPPCNR--GFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDC-PDETLIERLSQ-DNEEVIKKRLE  133 (151)
T ss_dssp             HHHHHHHHHHHHSGGTTT--EEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE---HHHHHHHHHT-GSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccc--eeeeeeccccHHHHHHHHHHHhhcccchheeecccc-chhhhhhhccc-CCHHHHHHHHH
Confidence            112223333333   234  7899996666777777776555566666 7888887 67888888555 55666666555


Q ss_pred             ccc
Q 009432          344 QWE  346 (535)
Q Consensus       344 rfE  346 (535)
                      .|.
T Consensus       134 ~y~  136 (151)
T PF00406_consen  134 EYR  136 (151)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK06217 hypothetical protein; Validated

Probab=98.39  E-value=2e-06  Score=81.74  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      -|+|.|.|||||||||++|.+.+    +  ..+++.|+++..
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l----~--~~~~~~D~~~~~   38 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERL----D--IPHLDTDDYFWL   38 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc----C--CcEEEcCceeec
Confidence            59999999999999999999875    2  346788988764

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.38  E-value=4.6e-06  Score=78.00  Aligned_cols=28  Identities=25%  Similarity=0.557  Sum_probs=24.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      ++|++.|++||||||+++.|++.+...|
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g   28 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARG   28 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999875443

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.33  E-value=1.1e-05  Score=76.58  Aligned_cols=28  Identities=29%  Similarity=0.517  Sum_probs=24.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ..+|++.|+.||||||+++.|.+.+...
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~   30 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQ   30 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4699999999999999999999887544

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.33  E-value=3e-06  Score=81.73  Aligned_cols=71  Identities=14%  Similarity=0.104  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhh
Q 009432          266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAG  343 (535)
Q Consensus       266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~k  343 (535)
                      +|..-.+.+...++.|+  +||+|-      ++..+..+.+.+.-.+++|++..++.++..+|...  ..+++.|+++.+
T Consensus        79 ~YGt~~~~i~~~~~~g~--~~i~d~------~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~  150 (186)
T PRK14737         79 YYGTPKAFIEDAFKEGR--SAIMDI------DVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIE  150 (186)
T ss_pred             eecCcHHHHHHHHHcCC--eEEEEc------CHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45556666788899999  999886      23344445554544445677765567777666544  346666766655


Q ss_pred             c
Q 009432          344 Q  344 (535)
Q Consensus       344 r  344 (535)
                      +
T Consensus       151 ~  151 (186)
T PRK14737        151 N  151 (186)
T ss_pred             H
Confidence            4

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.32  E-value=4.2e-06  Score=80.81  Aligned_cols=44  Identities=23%  Similarity=0.359  Sum_probs=36.1

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ..++.+|.|+|.+||||||||+.|...+   ++..+.+++.|+|+..
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l---~~~~~~~i~~D~~~~~   46 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEEL---GDESIAVIPQDSYYKD   46 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHh---CCCceEEEeCCccccC
Confidence            3578899999999999999999999875   2334567899998764

>PRK00625 shikimate kinase; Provisional

Probab=98.30  E-value=3.1e-06  Score=80.91  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=29.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .|+|+|+|||||||+|+.|++.+    + . .+++.|+++..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l----~-~-~~id~D~~I~~   37 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL----S-L-PFFDTDDLIVS   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C-C-CEEEhhHHHHH
Confidence            58999999999999999999875    2 2 35688887654

>PRK08118 topology modulation protein; Reviewed

Probab=98.29  E-value=2.5e-06  Score=80.71  Aligned_cols=35  Identities=40%  Similarity=0.550  Sum_probs=27.9

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      -|+|+|.|||||||||++|.+.+    +  ..+++.|+++.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l----~--~~~~~lD~l~~   37 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKL----N--IPVHHLDALFW   37 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CCceecchhhc
Confidence            38899999999999999999875    2  34567787664

>PRK08356 hypothetical protein; Provisional

Probab=98.29  E-value=8.4e-06  Score=78.35  Aligned_cols=38  Identities=21%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ..++|+|+|+|||||||+|+.|.+    . | . .+++.+|..+.
T Consensus         4 ~~~~i~~~G~~gsGK~t~a~~l~~----~-g-~-~~is~~~~~~~   41 (195)
T PRK08356          4 EKMIVGVVGKIAAGKTTVAKFFEE----K-G-F-CRVSCSDPLID   41 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH----C-C-C-cEEeCCCcccc
Confidence            346899999999999999999953    2 3 3 36688776543

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.29  E-value=3.7e-06  Score=80.14  Aligned_cols=62  Identities=15%  Similarity=0.031  Sum_probs=39.4

Q ss_pred             HHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhh
Q 009432          273 AFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAG  343 (535)
Q Consensus       273 ~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~k  343 (535)
                      .+...|+.|.  .||+|++      +..+.++++.++..+.+|.+.+ +.+++.+|-.+  ..+.+.+++...
T Consensus        81 ~~~~~l~~g~--~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~-s~e~l~~RL~~R~~~~~~~i~~rl~  144 (186)
T PRK10078         81 EIDLWLHAGF--DVLVNGS------RAHLPQARARYQSALLPVCLQV-SPEILRQRLENRGRENASEINARLA  144 (186)
T ss_pred             HHHHHHhCCC--EEEEeCh------HHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3677888898  8888875      4444556666666677777776 67776666532  334444544443

>PRK12338 hypothetical protein; Provisional

Probab=98.28  E-value=8.1e-06  Score=85.37  Aligned_cols=153  Identities=12%  Similarity=0.118  Sum_probs=78.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcccccccc---ccccCCccCCcchhhh------
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDV---SKSSGSLRSKKPVTKM------  252 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~---sk~~g~~r~kk~l~kk------  252 (535)
                      .+.+|+++|.|||||||+|+.|++++    | . ..+..+|+++....+....+.   .....++- .+.+...      
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l----~-~-~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a-~~~l~~~~~~~~~   75 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTL----N-I-KHLIETDFIREVVRGIIGKEYAPALHKSSYNA-YTALRDKENFKNN   75 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHC----C-C-eEEccChHHHHHHcCCCCcccCchhhcccHHH-HhhcCCcccccch
Confidence            46899999999999999999999875    2 2 344556666655432110000   00000000 0000000      


Q ss_pred             --hhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhh-cCceEEEEEEecCCHH----HH
Q 009432          253 --VMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKR-SGYEVYILEATYKDPA----GC  325 (535)
Q Consensus       253 --v~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~-~G~~V~vIe~~~~d~e----~c  325 (535)
                        ..-..|... -+.++..+...+.++++.|.  .|||+++.+.+..+..    .+. ....+.++.+. ++.+    .|
T Consensus        76 ~~~i~~gf~~q-~~~V~~~i~~vi~r~~~~g~--svIiEGvhl~P~~i~~----~~~~~~~~v~~~vl~-~dee~h~~Rf  147 (319)
T PRK12338         76 EELICAGFEEH-ASFVIPAIEKVIERAVTDSD--DIVIEGVHLVPGLIDI----EQFEENASIHFFILS-ADEEVHKERF  147 (319)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC--eEEEEeccccHHHHhh----hhhcccCceEEEEEE-CCHHHHHHHH
Confidence              000001000 11223333344566778898  9999999998765542    221 22345566665 4654    44


Q ss_pred             HHhhcC-------CCCHHHHHHHhhccccCC
Q 009432          326 AARNVH-------GFTLDDIERMAGQWEEAP  349 (535)
Q Consensus       326 i~RNih-------~VpeEvIe~M~krfE~~p  349 (535)
                      ..|-..       -...+.|+.|.+.+....
T Consensus       148 ~~R~~~~~r~~~~l~~f~~Ir~Iq~~l~~~A  178 (319)
T PRK12338        148 VKRAMEIKRGGKQLEYFRENRIIHDHLVEQA  178 (319)
T ss_pred             HHhhhccCCchhhhhChHHHHHHHHHHHHhH
Confidence            444321       122456777766666543

>PRK14529 adenylate kinase; Provisional

Probab=98.27  E-value=6.7e-06  Score=81.96  Aligned_cols=119  Identities=15%  Similarity=0.217  Sum_probs=69.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA  265 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~  265 (535)
                      |+|.|+|||||||+|+.|++++    +  ...++..++++.+...-               ..+-+++.+|.-....  .
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~----~--~~~is~gdllr~~i~~~---------------t~lg~~i~~~i~~G~l--v   59 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKY----D--LAHIESGAIFREHIGGG---------------TELGKKAKEYIDRGDL--V   59 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH----C--CCCcccchhhhhhccCC---------------ChHHHHHHHHHhccCc--c
Confidence            7889999999999999999875    2  23457888888754210               0111112222111000  0


Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHh
Q 009432          266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAAR  328 (535)
Q Consensus       266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~R  328 (535)
                      --+.+...+.+.|......-+|+|+-=-+..+-..|.++..+.++.+ .+|.+.+ +.+++++|
T Consensus        60 pdei~~~lv~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~-~~~~l~~R  122 (223)
T PRK14529         60 PDDITIPMILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILL-PREVAKNR  122 (223)
T ss_pred             hHHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHH
Confidence            01122233344443211126899997777778777777777777655 5777776 55555555

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.26  E-value=2.6e-06  Score=79.91  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=21.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+|+|+|++|||||||++.|+..+
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            379999999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.25  E-value=9.5e-06  Score=80.66  Aligned_cols=43  Identities=33%  Similarity=0.468  Sum_probs=36.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +.+||-+.|.+||||||+|++|.+.+   ++..+.+++.|||+...
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~I~~D~YYk~~   49 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVVISLDDYYKDQ   49 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceEeeccccccch
Confidence            45899999999999999999999886   33456788999998743

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.25  E-value=1.1e-05  Score=76.51  Aligned_cols=37  Identities=27%  Similarity=0.255  Sum_probs=28.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      +..|+|+|++||||||+|+.|+..+    +  ..+++.|..+.
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l----~--~~~vd~D~~i~   40 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQL----N--MEFYDSDQEIE   40 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHc----C--CcEEECCchHH
Confidence            4579999999999999999999864    2  24567776543

>PLN02674 adenylate kinase

Probab=98.24  E-value=5e-06  Score=83.90  Aligned_cols=120  Identities=16%  Similarity=0.141  Sum_probs=70.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      ...|+|.|.|||||||+|+.|++.+    +  ...++.+|+++.+...-     +     ..+ +.+..-+.....-++ 
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~----~--~~his~GdllR~~i~~~-----s-----~~g-~~i~~~~~~G~lvpd-   92 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEY----C--LCHLATGDMLRAAVAAK-----T-----PLG-IKAKEAMDKGELVSD-   92 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc----C--CcEEchhHHHHHHHhcc-----C-----hhh-HHHHHHHHcCCccCH-
Confidence            4568899999999999999999864    2  34569999998765310     0     001 111100001111111 


Q ss_pred             HHHHHHHHHHHHHHHHHc---CCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHh
Q 009432          263 EEAYRSSMLKAFTRTLDE---GNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAAR  328 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~---G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~R  328 (535)
                           +.+...+.+.|..   +.  -+|+|+-=-+..+-..|..+....|..+ .+|++.+ +.+++++|
T Consensus        93 -----~iv~~lv~~~l~~~~~~~--g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v-~~~~l~~R  154 (244)
T PLN02674         93 -----DLVVGIIDEAMKKPSCQK--GFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAI-DDAILEER  154 (244)
T ss_pred             -----HHHHHHHHHHHhCcCcCC--cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHH
Confidence                 1122223334432   33  6899997667777777777777777665 5677776 55665555

>PRK13808 adenylate kinase; Provisional

Probab=98.24  E-value=7.6e-06  Score=86.02  Aligned_cols=119  Identities=22%  Similarity=0.182  Sum_probs=66.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhh-hhccCchHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMV-MEYCYEPEMEE  264 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv-~ey~y~~e~ee  264 (535)
                      |||.|.|||||||+|+.|++.+    +  ..+++.+|+++.++...     +     ..+ .. .+.+ ....+.++  +
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~y----g--l~~is~gdlLR~~i~~~-----s-----~~g-~~-~~~~~~~G~lVPd--e   62 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQY----G--IVQLSTGDMLRAAVAAG-----T-----PVG-LK-AKDIMASGGLVPD--E   62 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh----C--CceecccHHHHHHhhcC-----C-----hhh-HH-HHHHHHcCCCCCH--H
Confidence            7889999999999999999874    2  35668899988654210     0     000 00 0011 01111111  1


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHh
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAAR  328 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~R  328 (535)
                      .+...+.+.+.. .....  -+|||+---+..+...|..+....++.+ ++|+|++ +.++|++|
T Consensus        63 iv~~li~e~l~~-~~~~~--G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDV-p~evll~R  123 (333)
T PRK13808         63 VVVGIISDRIEQ-PDAAN--GFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRV-NEGALLAR  123 (333)
T ss_pred             HHHHHHHHHHhc-ccccC--CEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEEC-CHHHHHHH
Confidence            111111111211 11222  5799985545666666666666666655 6777877 67777766

>PRK13948 shikimate kinase; Provisional

Probab=98.23  E-value=5.5e-06  Score=79.95  Aligned_cols=41  Identities=24%  Similarity=0.189  Sum_probs=31.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ..+..|+|+|++||||||+++.|++.+    + . .++..|.++...
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~l----g-~-~~iD~D~~ie~~   48 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRAL----M-L-HFIDTDRYIERV   48 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHc----C-C-CEEECCHHHHHH
Confidence            345789999999999999999999875    2 2 355888666543

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.23  E-value=1.4e-06  Score=81.51  Aligned_cols=71  Identities=11%  Similarity=-0.053  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhhc
Q 009432          267 RSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAGQ  344 (535)
Q Consensus       267 ~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~kr  344 (535)
                      |......+..+++.|.  +||+|.+..      ....+.+.++. +..|.+.+.+.+.+.+|-..  ..+.+.|++...+
T Consensus        77 y~~~~~~i~~~~~~g~--~vi~d~~~~------~~~~~~~~~~~-~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~  147 (180)
T TIGR03263        77 YGTPKSPVEEALAAGK--DVLLEIDVQ------GARQVKKKFPD-AVSIFILPPSLEELERRLRKRGTDSEEVIERRLAK  147 (180)
T ss_pred             eCCcHHHHHHHHHCCC--eEEEECCHH------HHHHHHHhCCC-cEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3444556788889999  999997522      22233444433 33344433466777766544  3456667665554


Q ss_pred             cc
Q 009432          345 WE  346 (535)
Q Consensus       345 fE  346 (535)
                      ..
T Consensus       148 ~~  149 (180)
T TIGR03263       148 AK  149 (180)
T ss_pred             HH
Confidence            43

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.22  E-value=8.9e-06  Score=81.18  Aligned_cols=39  Identities=31%  Similarity=0.509  Sum_probs=32.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~  228 (535)
                      +-|+|.|.|||||||+|+.|++.+    +  ..+++.||+++...
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~----g--~~~is~gdllr~~~   45 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKE----N--LKHINMGNILREEI   45 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh----C--CcEEECChHHHHHh
Confidence            348999999999999999999874    2  35779999998754

>PRK13947 shikimate kinase; Provisional

Probab=98.22  E-value=5.5e-06  Score=76.90  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=28.1

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      |+|+|+|||||||+|+.|++.+    | . .+++.|+++..
T Consensus         4 I~l~G~~GsGKst~a~~La~~l----g-~-~~id~d~~~~~   38 (171)
T PRK13947          4 IVLIGFMGTGKTTVGKRVATTL----S-F-GFIDTDKEIEK   38 (171)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh----C-C-CEEECchhhhh
Confidence            8999999999999999999876    2 2 35677776544

>PRK14530 adenylate kinase; Provisional

Probab=98.20  E-value=1.1e-05  Score=78.46  Aligned_cols=38  Identities=26%  Similarity=0.336  Sum_probs=31.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~  228 (535)
                      .|+|+|.|||||||+|+.|++.+    +  ...++.+|+++...
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~----~--~~~i~~g~~lr~~~   42 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEF----G--VEHVTTGDALRANK   42 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CeEEeccHHHHHhc
Confidence            58889999999999999999875    2  34568888888654

>PRK13949 shikimate kinase; Provisional

Probab=98.19  E-value=8.5e-06  Score=77.27  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=28.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      -|+|+|+|||||||+++.|++.+    +  ...++.|+++..
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l----~--~~~id~D~~i~~   38 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAREL----G--LSFIDLDFFIEN   38 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc----C--CCeecccHHHHH
Confidence            38999999999999999999875    2  246688876643

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.18  E-value=4.8e-06  Score=80.82  Aligned_cols=38  Identities=29%  Similarity=0.471  Sum_probs=31.9

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ||.|+|.|||||||||+.|++.+   +  .+.+++.|||+...
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~---~--~~~~i~~Ddf~~~~   38 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRIL---P--NCCVIHQDDFFKPE   38 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc---C--CCeEEccccccCCc
Confidence            58899999999999999999874   1  25688999998754

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK03839 putative kinase; Provisional

Probab=98.18  E-value=3.7e-06  Score=79.22  Aligned_cols=36  Identities=25%  Similarity=0.530  Sum_probs=29.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .|+|.|+|||||||+|++|++.+    +  ..+++.|++++.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~----~--~~~id~d~~~~~   37 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL----G--YEYVDLTEFALK   37 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CcEEehhhhhhh
Confidence            58999999999999999999875    2  246688887654

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.18  E-value=3e-06  Score=81.21  Aligned_cols=42  Identities=33%  Similarity=0.441  Sum_probs=32.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCC---CcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGD---APRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~---~~rIlS~DDyfr~  226 (535)
                      ||.|+|.+||||||||+.|...+...+..   ...+++.|+|...
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~   45 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDD   45 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccc
Confidence            68999999999999999999988544322   1456778877653

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK04040 adenylate kinase; Provisional

Probab=98.18  E-value=1.6e-05  Score=76.93  Aligned_cols=41  Identities=17%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +.+|+++|.|||||||+++.|++.+.    ....+++.+|++...
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~----~~~~~~~~g~~~~~~   42 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK----EDYKIVNFGDVMLEV   42 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc----cCCeEEecchHHHHH
Confidence            46899999999999999999998752    124567888887654

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.17  E-value=1.2e-06  Score=84.99  Aligned_cols=158  Identities=19%  Similarity=0.165  Sum_probs=83.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh----hccccccccccccCCccCCcchhh-----h
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE----VEKVEDSDVSKSSGSLRSKKPVTK-----M  252 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~----~e~v~~~~~sk~~g~~r~kk~l~k-----k  252 (535)
                      ...||||.|++|+||||++++|.+..    +   .-+|..---|..    .++++..        ....+++.+     +
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~----~---l~~SVS~TTR~pR~gEv~G~dY~--------Fvs~~EF~~~i~~~~   67 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD----K---LRFSVSATTRKPRPGEVDGVDYF--------FVTEEEFEELIERDE   67 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc----C---eEEEEEeccCCCCCCCcCCceeE--------eCCHHHHHHHHhcCC
Confidence            56799999999999999999999763    1   111221111111    1111100        000011110     1


Q ss_pred             hhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-
Q 009432          253 VMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH-  331 (535)
Q Consensus       253 v~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih-  331 (535)
                      .+||.   +..+.+|......++..++.|+  .||+|-.      .+-..++-+.+. .++.|.+.+++.+++.+|=.. 
T Consensus        68 fLE~a---~~~gnyYGT~~~~ve~~~~~G~--~vildId------~qGa~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~R  135 (191)
T COG0194          68 FLEWA---EYHGNYYGTSREPVEQALAEGK--DVILDID------VQGALQVKKKMP-NAVSIFILPPSLEELERRLKGR  135 (191)
T ss_pred             cEEEE---EEcCCcccCcHHHHHHHHhcCC--eEEEEEe------hHHHHHHHHhCC-CeEEEEEcCCCHHHHHHHHHcc
Confidence            11221   1123467777777899999999  8888763      233334444444 667777766666766555322 


Q ss_pred             -CCCHHHHHHHhhccccCCccceeecCCCCc-cCCCcccc
Q 009432          332 -GFTLDDIERMAGQWEEAPTLYLQLDIKTLF-HGDDLKES  369 (535)
Q Consensus       332 -~VpeEvIe~M~krfE~~p~~y~~lD~~sll-~~ddl~e~  369 (535)
                       .-++++|.   +|++.+......++..+.+ .||||..|
T Consensus       136 gtds~e~I~---~Rl~~a~~Ei~~~~~fdyvivNdd~e~a  172 (191)
T COG0194         136 GTDSEEVIA---RRLENAKKEISHADEFDYVIVNDDLEKA  172 (191)
T ss_pred             CCCCHHHHH---HHHHHHHHHHHHHHhCCEEEECccHHHH
Confidence             34455554   4444444344444445554 35555444

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.17  E-value=1.1e-05  Score=76.99  Aligned_cols=42  Identities=36%  Similarity=0.554  Sum_probs=34.9

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +|.|+|.|||||||||+.|.+.+... |..+.+++.|||+...
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~-~~~~~~i~~Ddf~~~~   42 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVN-GIGPVVISLDDYYVPR   42 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEehhhcccCc
Confidence            58999999999999999999887543 4456788999999743

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.16  E-value=4.1e-06  Score=80.14  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=23.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....+|+|+|++||||||||+.|...+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            355689999999999999999998753

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.14  E-value=1.6e-06  Score=75.81  Aligned_cols=34  Identities=50%  Similarity=0.674  Sum_probs=28.9

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      +|+|+|+|||||||+|+.|++.+    +  ..+++.|+++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~----~--~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL----G--FPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH----T--CEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH----C--CeEEEecceE
Confidence            68999999999999999999875    2  4677889853

...

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.14  E-value=6.6e-05  Score=71.17  Aligned_cols=28  Identities=36%  Similarity=0.624  Sum_probs=24.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      .++|++.|++||||||+|+.|++.+...
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~   30 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQEN   30 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999987543

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PLN02348 phosphoribulokinase

Probab=98.12  E-value=1.3e-05  Score=85.88  Aligned_cols=45  Identities=24%  Similarity=0.302  Sum_probs=36.1

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcC--------------CCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENG--------------GDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g--------------G~~~rIlS~DDyfr  225 (535)
                      ..++||.|+|.+||||||||+.|.+.+...+              +..+.+++.|||..
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~  105 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS  105 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccC
Confidence            4678999999999999999999999874321              13457889999975

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.12  E-value=8.3e-06  Score=75.18  Aligned_cols=38  Identities=34%  Similarity=0.516  Sum_probs=30.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ++|+|+|.+||||||+|+.|++.+    |  ..+++.|++++..
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~l----g--~~~~~~~~~~~~~   38 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKL----S--LKLISAGDIFREL   38 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc----C--CceecHHHHHHHH
Confidence            479999999999999999999864    2  2466877776544

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK04182 cytidylate kinase; Provisional

Probab=98.08  E-value=5.8e-06  Score=76.69  Aligned_cols=37  Identities=32%  Similarity=0.557  Sum_probs=28.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ++|+|+|.+||||||+|+.|++.+    | . .+++.|++++.
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~l----g-~-~~id~~~~~~~   37 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKL----G-L-KHVSAGEIFRE   37 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc----C-C-cEecHHHHHHH
Confidence            379999999999999999999864    2 2 35566666554

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.07  E-value=1.7e-05  Score=75.81  Aligned_cols=129  Identities=16%  Similarity=0.103  Sum_probs=87.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      +.+.||.|..||||||+-..+...+.  +  ...+++.|.+......    +..                       ..+
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~--~--~~~~VN~D~iA~~i~p----~~p-----------------------~~~   50 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLL--P--GIVFVNADEIAAQISP----DNP-----------------------TSA   50 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhc--C--CeEEECHHHHhhhcCC----CCc-----------------------hHH
Confidence            56889999999999999776655432  2  3456677766554321    110                       011


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc-------CCCCH
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV-------HGFTL  335 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi-------h~Vpe  335 (535)
                      .-..-+.+...+..+++.|.  .++++.|....+ ..+++..|++.||-+...++.....+..++|-.       |.+++
T Consensus        51 ~i~A~r~ai~~i~~~I~~~~--~F~~ETtLS~~s-~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpE  127 (187)
T COG4185          51 AIQAARVAIDRIARLIDLGR--PFIAETTLSGPS-ILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPE  127 (187)
T ss_pred             HHHHHHHHHHHHHHHHHcCC--CcceEEeeccch-HHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcH
Confidence            11233455666778889998  899999887755 457888999999998777766656665555533       58999


Q ss_pred             HHHHHHhhcc
Q 009432          336 DDIERMAGQW  345 (535)
Q Consensus       336 EvIe~M~krf  345 (535)
                      +.|++-+.+-
T Consensus       128 D~Ir~RY~rs  137 (187)
T COG4185         128 DKIRRRYRRS  137 (187)
T ss_pred             HHHHHHHHHH
Confidence            9998877653

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.06  E-value=3.6e-05  Score=75.85  Aligned_cols=46  Identities=28%  Similarity=0.459  Sum_probs=37.0

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEE-EeCCceeee
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRI-HSMDDYFMT  226 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rI-lS~DDyfr~  226 (535)
                      ...+.+|.|.|.+|||||||++.|+..+...++.. .| ++.|++...
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~-~v~i~~D~~~~~   76 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP-AIQVPMDGFHLD   76 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc-eEEEecccccCC
Confidence            35688999999999999999999998876655533 45 788987754

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.05  E-value=3.6e-05  Score=74.08  Aligned_cols=108  Identities=22%  Similarity=0.225  Sum_probs=61.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      =|+|+|++||||||+.+.|++.|.      ...+..|.++.....                 +.+     ..+|+..-++
T Consensus         4 ~IvLiG~mGaGKSTIGr~LAk~L~------~~F~D~D~~Ie~~~g-----------------~sI-----~eIF~~~GE~   55 (172)
T COG0703           4 NIVLIGFMGAGKSTIGRALAKALN------LPFIDTDQEIEKRTG-----------------MSI-----AEIFEEEGEE   55 (172)
T ss_pred             cEEEEcCCCCCHhHHHHHHHHHcC------CCcccchHHHHHHHC-----------------cCH-----HHHHHHHhHH
Confidence            489999999999999999998761      235567765543321                 111     1223333333


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeC--CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDD--RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV  330 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDa--TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi  330 (535)
                      ..+..-.+.+.+.+..+.  .||-=+  +....+-|.    +.++.|   .+|++.+ +.++..+|-.
T Consensus        56 ~FR~~E~~vl~~l~~~~~--~ViaTGGG~v~~~enr~----~l~~~g---~vv~L~~-~~e~l~~Rl~  113 (172)
T COG0703          56 GFRRLETEVLKELLEEDN--AVIATGGGAVLSEENRN----LLKKRG---IVVYLDA-PFETLYERLQ  113 (172)
T ss_pred             HHHHHHHHHHHHHhhcCC--eEEECCCccccCHHHHH----HHHhCC---eEEEEeC-CHHHHHHHhc
Confidence            334333344555555553  454443  444444444    555555   4666665 7777777654

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.05  E-value=1.3e-05  Score=79.12  Aligned_cols=43  Identities=21%  Similarity=0.250  Sum_probs=33.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyfr~~  227 (535)
                      ||.|+|.+||||||||+.|+..+... .+..+.++++|+|+...
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~   44 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPN   44 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcH
Confidence            57899999999999999999887431 23346788999997643

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.04  E-value=1.7e-05  Score=70.95  Aligned_cols=32  Identities=34%  Similarity=0.416  Sum_probs=25.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      +|+|+|.|||||||+|+.|++.+    +  ..+++.|.
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~----~--~~~~~~~~   32 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL----G--LPYLDTGG   32 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh----C--Cceecccc
Confidence            58999999999999999999874    2  23556663

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.03  E-value=4.5e-05  Score=72.99  Aligned_cols=122  Identities=17%  Similarity=0.196  Sum_probs=76.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      ||+=++.+||||||+|..|...+-    .+.+| -.||+-.. .                                    
T Consensus         1 vlvPIAtiGCGKTTva~aL~~LFg----~wgHv-QnDnI~~k-~------------------------------------   38 (168)
T PF08303_consen    1 VLVPIATIGCGKTTVALALSNLFG----EWGHV-QNDNITGK-R------------------------------------   38 (168)
T ss_pred             CEeeecCCCcCHHHHHHHHHHHcC----CCCcc-ccCCCCCC-C------------------------------------
Confidence            466688999999999999998863    23333 44543211 0                                    


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCc-------eEEEEEEecC---CH----HHHHHhhc
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGY-------EVYILEATYK---DP----AGCAARNV  330 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~-------~V~vIe~~~~---d~----e~ci~RNi  330 (535)
                        ...+.+.+.+.|+.....+||+|-.|....+|++++...++..-       .+.+|-+.+.   +.    +.|..|-.
T Consensus        39 --~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~  116 (168)
T PF08303_consen   39 --KPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVL  116 (168)
T ss_pred             --HHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence              00222334455633334599999999999999999998877544       5555555542   12    35665533


Q ss_pred             -----C-----CC-C----HHHHHHHhhccccCCc
Q 009432          331 -----H-----GF-T----LDDIERMAGQWEEAPT  350 (535)
Q Consensus       331 -----h-----~V-p----eEvIe~M~krfE~~p~  350 (535)
                           |     .. .    ..+++.+.++||+..+
T Consensus       117 ~RGDNHQTika~~~~~~~~~~Im~gFi~rfep~~~  151 (168)
T PF08303_consen  117 ARGDNHQTIKADSKDEKKVEGIMEGFIKRFEPVDP  151 (168)
T ss_pred             hcCcCcceeecCCCCHHHHHHHHHHHHHhcCCCCC
Confidence                 2     11 2    3467777889998654

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>TIGR00235 udk uridine kinase

Probab=98.03  E-value=5e-05  Score=73.56  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=34.7

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .+...+|.|+|.+||||||||+.|...+..   ....+++.|+|+..
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---~~~~~i~~D~~~~~   46 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK---LEIVIISQDNYYKD   46 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcc---cCCeEecccccccC
Confidence            456689999999999999999999987521   23567899988653

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>smart00072 GuKc Guanylate kinase homologues

Probab=98.02  E-value=5.4e-06  Score=78.96  Aligned_cols=70  Identities=10%  Similarity=0.115  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhh
Q 009432          266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAG  343 (535)
Q Consensus       266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~k  343 (535)
                      +|......+...++.|+  .+|+|..   .....++    ++.....++|.+..++.+++.+|-..  ..+.+.|+++..
T Consensus        78 ~YGt~~~~i~~~~~~~~--~~ild~~---~~~~~~l----~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~  148 (184)
T smart00072       78 YYGTSKETIRQVAEQGK--HCLLDID---PQGVKQL----RKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLA  148 (184)
T ss_pred             CcccCHHHHHHHHHcCC--eEEEEEC---HHHHHHH----HHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            44555566788888998  9999975   2222222    22344556777765567766666543  456677776655


Q ss_pred             c
Q 009432          344 Q  344 (535)
Q Consensus       344 r  344 (535)
                      +
T Consensus       149 ~  149 (184)
T smart00072      149 A  149 (184)
T ss_pred             H
Confidence            4

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK13973 thymidylate kinase; Provisional

Probab=98.00  E-value=6.3e-05  Score=73.55  Aligned_cols=29  Identities=28%  Similarity=0.307  Sum_probs=25.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      .++|++.|+.||||||.++.|++++...|
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g   31 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAG   31 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            47899999999999999999999986543

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.00  E-value=2.5e-05  Score=74.78  Aligned_cols=39  Identities=33%  Similarity=0.545  Sum_probs=32.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~  228 (535)
                      ++|.+.|+|||||||+|+.|++.+    |  ..++|.+++|+...
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~----g--l~~vsaG~iFR~~A   39 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHL----G--LKLVSAGTIFREMA   39 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHh----C--CceeeccHHHHHHH
Confidence            478999999999999999999875    3  34679999999764

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.99  E-value=8.4e-06  Score=79.37  Aligned_cols=26  Identities=19%  Similarity=0.456  Sum_probs=22.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..+.+|||+|++|||||||++.|.+.
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            35679999999999999999999753

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.97  E-value=2.4e-05  Score=81.03  Aligned_cols=39  Identities=28%  Similarity=0.373  Sum_probs=28.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ....+|+|+|++||||||+++.|++.+    | . .++..|.++.
T Consensus       131 ~~~~~I~l~G~~GsGKStvg~~La~~L----g-~-~~id~D~~i~  169 (309)
T PRK08154        131 ARRRRIALIGLRGAGKSTLGRMLAARL----G-V-PFVELNREIE  169 (309)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHc----C-C-CEEeHHHHHH
Confidence            355689999999999999999999875    2 2 2446665443

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=97.97  E-value=1.1e-05  Score=85.18  Aligned_cols=124  Identities=19%  Similarity=0.192  Sum_probs=88.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ...+-|+++||+|+||||++-+|.++++.. |..+.-+.-|.|+.-...         ..|                |++
T Consensus        48 frgctvw~tglsgagkttis~ale~~l~~~-gipcy~ldgdnirhgl~k---------nlg----------------fs~  101 (627)
T KOG4238|consen   48 FRGCTVWLTGLSGAGKTTISFALEEYLVSH-GIPCYSLDGDNIRHGLNK---------NLG----------------FSP  101 (627)
T ss_pred             ccceeEEeeccCCCCcceeehHHHHHHHhc-CCcccccCcchhhhhhhh---------ccC----------------CCc
Confidence            456889999999999999999999998765 566666666666653321         122                333


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCC
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGF  333 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~V  333 (535)
                      +..+....++.+.++...+.|.  +.|-.......++|..-.++-...+.+++-|.+.+ ++++|.+|..++.
T Consensus       102 edreenirriaevaklfadagl--vcitsfispf~~dr~~arkihe~~~l~f~ev~v~a-~l~vceqrd~k~l  171 (627)
T KOG4238|consen  102 EDREENIRRIAEVAKLFADAGL--VCITSFISPFAKDRENARKIHESAGLPFFEVFVDA-PLNVCEQRDVKGL  171 (627)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCc--eeeehhcChhhhhhhhhhhhhcccCCceEEEEecC-chhhhhhcChHHH
Confidence            3333333455565666667786  66766666667888888888888888887777765 7899999987643

>PRK14526 adenylate kinase; Provisional

Probab=97.96  E-value=4.1e-05  Score=75.51  Aligned_cols=37  Identities=35%  Similarity=0.486  Sum_probs=30.0

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~  228 (535)
                      |+|.|.|||||||+|+.|++.+    +  ...++.+++++...
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~----~--~~~is~G~llr~~~   39 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNEL----N--YYHISTGDLFRENI   39 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh----C--CceeecChHHHHhc
Confidence            7789999999999999999764    2  34568899988654

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.95  E-value=8.7e-05  Score=77.16  Aligned_cols=133  Identities=20%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcccccc--c----ccc-ccCCccCCcchh-hh
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDS--D----VSK-SSGSLRSKKPVT-KM  252 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~--~----~sk-~~g~~r~kk~l~-kk  252 (535)
                      ..+++|+++|.+||||||+|+.|+.++    + ...|++.|.++......+...  .    .++ .|..-.....-. ..
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l----~-~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~  164 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRL----G-IRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPV  164 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh----C-CCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhh
Confidence            367999999999999999999999886    2 235778776652221100000  0    000 000000000000 00


Q ss_pred             hhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH
Q 009432          253 VMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA  327 (535)
Q Consensus       253 v~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~  327 (535)
                      +..  |....+ .+...+...+.+++++|.  .+||.+.+..+...+.+.   .++. .+..+.|.+.+.+...+
T Consensus       165 l~g--~~~~~~-~v~~gi~~~I~~~~~~g~--s~IiEGvhl~P~~i~~~~---~~~~-~~i~~~l~i~~ee~h~~  230 (301)
T PRK04220        165 IYG--FERHVE-PVSVGVEAVIERALKEGI--SVIIEGVHIVPGFIKEKY---LENP-NVFMFVLTLSDEEAHKA  230 (301)
T ss_pred             hhh--HHHHHH-HHHHHHHHHHHHHHHhCC--cEEEecCCCCHHHHHHhh---hcCC-CEEEEEEEECCHHHHHH
Confidence            111  111111 122224455678889998  999999999988766533   2222 23344555456554433

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.94  E-value=4.8e-05  Score=70.88  Aligned_cols=36  Identities=25%  Similarity=0.452  Sum_probs=28.1

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .|+|+|++||||||+|+.|++.+    | . .+++.|.++..
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~l----g-~-~~~d~D~~~~~   39 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQAL----G-Y-RFVDTDQWLQS   39 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh----C-C-CEEEccHHHHH
Confidence            47889999999999999999875    2 2 35677776544

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.94  E-value=7.3e-05  Score=77.21  Aligned_cols=43  Identities=19%  Similarity=0.220  Sum_probs=29.9

Q ss_pred             EEEEeCCCCC-HHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432          285 IVIVDDRNLR-VADFAQFWATAKRSGYEVYILEATYKDPAGCAAR  328 (535)
Q Consensus       285 ~VIVDaTN~~-~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R  328 (535)
                      .|++|.++.. .......+...++.|+.+.+|++.+ +.+++++|
T Consensus        59 av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a-~~e~L~~R  102 (288)
T PRK05416         59 AVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDA-SDEVLIRR  102 (288)
T ss_pred             EEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHH
Confidence            7899998653 2234444555555688888888987 77777776

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=97.91  E-value=0.00014  Score=69.03  Aligned_cols=22  Identities=41%  Similarity=0.588  Sum_probs=20.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +|++.|+.||||||+++.|.++
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~   22 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEH   22 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999976

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PLN02459 probable adenylate kinase

Probab=97.90  E-value=8.2e-05  Score=75.94  Aligned_cols=41  Identities=27%  Similarity=0.357  Sum_probs=32.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~  228 (535)
                      .++.|||.|.|||||||+|+.|++.+    +  ...++.+|+++.+.
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~----~--~~~is~gdllR~ei   68 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLL----G--VPHIATGDLVREEI   68 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh----C--CcEEeCcHHHHHHH
Confidence            34568888999999999999999874    2  34668999998765

>TIGR00152 dephospho-CoA kinase

Probab=97.89  E-value=4.6e-05  Score=72.67  Aligned_cols=37  Identities=32%  Similarity=0.206  Sum_probs=30.1

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +|.|+|-+||||||+|+.|.+.    |+  ..+++.|++.+..
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~----~~--~~~i~~D~~~~~~   37 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADK----YH--FPVIDADKIAHQV   37 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh----cC--CeEEeCCHHHHHH
Confidence            4889999999999999999875    22  3578999987654

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.84  E-value=6.1e-06  Score=78.30  Aligned_cols=25  Identities=44%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.+|||+|++|||||||++.|.+.+
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~   26 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEF   26 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            3489999999999999999998753

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=97.81  E-value=0.00012  Score=71.10  Aligned_cols=38  Identities=32%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .+|.|+|.+||||||+|+.|.+.+    |  ..+++.|++.+..
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~----g--~~~i~~D~~~~~~   39 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQK----G--IPILDADIYAREA   39 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh----C--CeEeeCcHHHHHH
Confidence            479999999999999999999753    2  3577999987654

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=97.81  E-value=6.4e-05  Score=71.42  Aligned_cols=36  Identities=39%  Similarity=0.451  Sum_probs=29.9

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +|.|+|.+||||||+|+.|.++     |  ..+++.|++.+..
T Consensus         1 ii~itG~~gsGKst~~~~l~~~-----g--~~~i~~D~~~~~~   36 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKEL-----G--IPVIDADKIAHEV   36 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHC-----C--CCEEecCHHHHhh
Confidence            5899999999999999999862     3  3577999987754

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PLN02924 thymidylate kinase

Probab=97.80  E-value=0.00024  Score=70.47  Aligned_cols=31  Identities=32%  Similarity=0.297  Sum_probs=26.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      ....+|++.|+.||||||+|+.|++.+...|
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g   44 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLG   44 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            3457999999999999999999999987653

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=97.77  E-value=0.00017  Score=68.16  Aligned_cols=126  Identities=17%  Similarity=0.187  Sum_probs=75.5

Q ss_pred             ccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee-hhccccccccccccCCccCCcchhhhhhhccCchHHHHHHHH
Q 009432          190 GLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT-EVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRS  268 (535)
Q Consensus       190 GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~-~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~q  268 (535)
                      |..||||||++++|++++    |  ...+.-||+--. +.++..       .|     .++.        +.+... .-+
T Consensus         2 GVsG~GKStvg~~lA~~l----g--~~fidGDdlHp~aNi~KM~-------~G-----iPL~--------DdDR~p-WL~   54 (161)
T COG3265           2 GVSGSGKSTVGSALAERL----G--AKFIDGDDLHPPANIEKMS-------AG-----IPLN--------DDDRWP-WLE   54 (161)
T ss_pred             CCCccCHHHHHHHHHHHc----C--CceecccccCCHHHHHHHh-------CC-----CCCC--------cchhhH-HHH
Confidence            889999999999999876    2  233455664321 111110       01     1111        111111 112


Q ss_pred             HHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh----hcCCCCHHHHHHHhhc
Q 009432          269 SMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR----NVHGFTLDDIERMAGQ  344 (535)
Q Consensus       269 ~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R----Nih~VpeEvIe~M~kr  344 (535)
                      .+...+....+.|.  .+||-+.-+++.+|..++    ...=.+.||++.. +.++.++|    .-|-.+...++.++.-
T Consensus        55 ~l~~~~~~~~~~~~--~~vi~CSALKr~YRD~LR----~~~~~~~Fv~L~g-~~~~i~~Rm~~R~gHFM~~~ll~SQfa~  127 (161)
T COG3265          55 ALGDAAASLAQKNK--HVVIACSALKRSYRDLLR----EANPGLRFVYLDG-DFDLILERMKARKGHFMPASLLDSQFAT  127 (161)
T ss_pred             HHHHHHHHhhcCCC--ceEEecHHHHHHHHHHHh----ccCCCeEEEEecC-CHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            33334444455676  688878878877776544    3333478888875 66665554    4568899999999999


Q ss_pred             cccCC
Q 009432          345 WEEAP  349 (535)
Q Consensus       345 fE~~p  349 (535)
                      +|++-
T Consensus       128 LE~P~  132 (161)
T COG3265         128 LEEPG  132 (161)
T ss_pred             hcCCC
Confidence            98753

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.76  E-value=0.00013  Score=71.19  Aligned_cols=44  Identities=25%  Similarity=0.218  Sum_probs=36.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      |.+|+|+|+.|+||||.+.+|+.++... +..+.+++.|.|+...
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga   44 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGA   44 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccH
Confidence            5689999999999999999999988877 6677888999887643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=97.76  E-value=0.00012  Score=71.23  Aligned_cols=140  Identities=19%  Similarity=0.204  Sum_probs=80.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-hccCch
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-EYCYEP  260 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-ey~y~~  260 (535)
                      .+.+|++.|-|||||-|.+.+|++++    + + ..+|.+|+.|.+...         .|..++  .+.++.+ +....|
T Consensus         7 ~~~IifVlGGPGsgKgTqC~kiv~ky----~-f-tHlSaGdLLR~E~~~---------~gse~g--~~I~~~i~~G~iVP   69 (195)
T KOG3079|consen    7 KPPIIFVLGGPGSGKGTQCEKIVEKY----G-F-THLSAGDLLRAEIAS---------AGSERG--ALIKEIIKNGDLVP   69 (195)
T ss_pred             CCCEEEEEcCCCCCcchHHHHHHHHc----C-c-eeecHHHHHHHHHcc---------ccChHH--HHHHHHHHcCCcCc
Confidence            45688899999999999999999763    4 4 466999999987542         122222  1111111 111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHc-CCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH----hhcC-CCC
Q 009432          261 EMEEAYRSSMLKAFTRTLDE-GNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA----RNVH-GFT  334 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~-G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~----RNih-~Vp  334 (535)
                        .    +.+.+.++.+|.+ +.-..++||+---...+...|-...+.  -.-+++.+.| ..++|++    |++. .+.
T Consensus        70 --~----ei~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~--~~~fvl~fdc-~ee~~l~Rll~R~q~~~R~  140 (195)
T KOG3079|consen   70 --V----EITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQG--DPDFVLFFDC-PEETMLKRLLHRGQSNSRS  140 (195)
T ss_pred             --H----HHHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcC--CCCEEEEEeC-CHHHHHHHHHhhcccCCCC
Confidence              1    1233334444433 211148999955556666666655542  1224555565 5666665    4543 477


Q ss_pred             HHHHHHHhhcccc
Q 009432          335 LDDIERMAGQWEE  347 (535)
Q Consensus       335 eEvIe~M~krfE~  347 (535)
                      ++.++.+.+|++-
T Consensus       141 DDn~esikkR~et  153 (195)
T KOG3079|consen  141 DDNEESIKKRLET  153 (195)
T ss_pred             CCchHHHHHHHHH
Confidence            7777777777775

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.72  E-value=0.0002  Score=78.98  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=29.3

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      -|+|+|+|||||||+|+.|++.+    +  ..+++.|+++..
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~l----g--~~~id~D~~i~~   37 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVL----D--LQFIDMDEEIER   37 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc----C--CeEEECcHHHHH
Confidence            48999999999999999999764    2  356788887654

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=97.70  E-value=0.00033  Score=78.05  Aligned_cols=113  Identities=14%  Similarity=0.196  Sum_probs=62.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      ...|+|+|+|||||||+++.|++.+    + . ..+..|+++......                 .+     ..+|...-
T Consensus         6 ~~~i~LiG~~GaGKttvg~~LA~~L----~-~-~fiD~D~~ie~~~g~-----------------si-----~eif~~~G   57 (542)
T PRK14021          6 RPQAVIIGMMGAGKTRVGKEVAQMM----R-L-PFADADVEIEREIGM-----------------SI-----PSYFEEYG   57 (542)
T ss_pred             CccEEEECCCCCCHHHHHHHHHHHh----C-C-CEEEchHHHHHHHCc-----------------CH-----HHHHHHHH
Confidence            3479999999999999999999986    2 2 366888876543210                 00     01122122


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEE-EeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVI-VDD-RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VI-VDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                      +...++.-.+.+++.+....  .|| .-+ +-...+-|+.+.++.++.|   .+|++.+ +++++.+|-
T Consensus        58 e~~FR~~E~~~l~~~~~~~~--~VIs~GGG~v~~~~n~~~L~~~~~~~g---~vv~L~~-~~~~l~~Rl  120 (542)
T PRK14021         58 EPAFREVEADVVADMLEDFD--GIFSLGGGAPMTPSTQHALASYIAHGG---RVVYLDA-DPKEAMERA  120 (542)
T ss_pred             HHHHHHHHHHHHHHHHhcCC--eEEECCCchhCCHHHHHHHHHHHhcCC---EEEEEEC-CHHHHHHHH
Confidence            22223222223333343332  343 222 2334455555555666666   3566665 778887764

>PRK07429 phosphoribulokinase; Provisional

Probab=97.69  E-value=0.00037  Score=73.20  Aligned_cols=41  Identities=24%  Similarity=0.299  Sum_probs=33.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      .++++|.|+|.+||||||||+.|+..+.   .....+++.|||.
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~---~~~~~vi~~Dd~~   46 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLG---EELVTVICTDDYH   46 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhc---cCceEEEEecccc
Confidence            4678999999999999999999998762   2234577889985

>PRK10867 signal recognition particle protein; Provisional

Probab=97.69  E-value=0.00033  Score=76.22  Aligned_cols=47  Identities=21%  Similarity=0.215  Sum_probs=38.0

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ...+.+|+|+|++||||||+|..|+.++....|..+.+++.|.|+..
T Consensus        97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a  143 (433)
T PRK10867         97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA  143 (433)
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence            34589999999999999999999998877663456678888876654

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.67  E-value=0.00011  Score=65.77  Aligned_cols=38  Identities=26%  Similarity=0.312  Sum_probs=27.3

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      +++++|.||+||||+++.++..+...++ .+.+++.+..
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~-~v~~~~~e~~   38 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGG-KVVYVDIEEE   38 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCC-EEEEEECCcc
Confidence            4789999999999999999887654333 3334444443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.67  E-value=0.00035  Score=65.30  Aligned_cols=39  Identities=31%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      +++++|.|||||||+++.++..+.+.+ ..+.+++.|.++
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g-~~v~~i~~D~~~   40 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKG-KKVLLVAADTYR   40 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC-CcEEEEEcCCCC
Confidence            789999999999999999998877663 345566777554

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK13975 thymidylate kinase; Provisional

Probab=97.63  E-value=0.00038  Score=66.02  Aligned_cols=24  Identities=38%  Similarity=0.535  Sum_probs=22.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++|++.|++||||||+|+.|++.+
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l   26 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKL   26 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999999886

>PLN02772 guanylate kinase

Probab=97.63  E-value=0.00013  Score=78.30  Aligned_cols=73  Identities=16%  Similarity=0.083  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHh
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMA  342 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~  342 (535)
                      .+|..-.+.+...++.|+  .+|+|-   +..-.+.+++..    +..++|.+...+.+++.+|-..  ..+++.|+++.
T Consensus       210 n~YGTsk~~V~~vl~~Gk--~vILdL---D~qGar~Lr~~~----l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL  280 (398)
T PLN02772        210 NLYGTSIEAVEVVTDSGK--RCILDI---DVQGARSVRASS----LEAIFIFICPPSMEELEKRLRARGTETEEQIQKRL  280 (398)
T ss_pred             ccccccHHHHHHHHHhCC--cEEEeC---CHHHHHHHHHhc----CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence            456666777888899999  888874   333444443321    2333343332356776666443  44678887777


Q ss_pred             hccc
Q 009432          343 GQWE  346 (535)
Q Consensus       343 krfE  346 (535)
                      ++++
T Consensus       281 ~~A~  284 (398)
T PLN02772        281 RNAE  284 (398)
T ss_pred             HHHH
Confidence            7664

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.63  E-value=0.00035  Score=75.92  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=36.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ..+.+|+|+|++||||||+|.+|+.++... |..+.+++.|-|+.
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~D~~R~  141 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCADTFRA  141 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcCcccch
Confidence            457899999999999999999999887655 45667788887764

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.63  E-value=0.00036  Score=75.53  Aligned_cols=113  Identities=20%  Similarity=0.241  Sum_probs=66.3

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE  259 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~  259 (535)
                      ...+.+|+|+||-||||||.|-+|+.++.. .+..+-+++.|-|+-...+-+               +.+.+++.--.|.
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL---------------~~La~q~~v~~f~  160 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQL---------------KQLAEQVGVPFFG  160 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHH---------------HHHHHHcCCceec
Confidence            456899999999999999999999999987 456777888887765432200               0011111111122


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCceEEEEeC---CCCCHHHHHHHHHHHhhcC
Q 009432          260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDD---RNLRVADFAQFWATAKRSG  309 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDa---TN~~~~~R~~f~~LAr~~G  309 (535)
                      ...+..-. .+.+.+.+.++...+.+||||.   ......-..++.++.+...
T Consensus       161 ~~~~~~Pv-~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~  212 (451)
T COG0541         161 SGTEKDPV-EIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVIN  212 (451)
T ss_pred             CCCCCCHH-HHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcC
Confidence            11111011 1222233333444357999996   4555667777777666554

>PRK13974 thymidylate kinase; Provisional

Probab=97.62  E-value=0.0016  Score=63.72  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=24.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      ..+|+|.|++||||||+++.|.+++..
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~   29 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPS   29 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            469999999999999999999998753

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=97.61  E-value=0.00029  Score=67.99  Aligned_cols=37  Identities=32%  Similarity=0.407  Sum_probs=30.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .+|.|+|.+||||||+++.|.++     |  ..+++.|++.+..
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~~-----g--~~~i~~D~~~~~~   39 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAEL-----G--APVIDADAIAHEV   39 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHc-----C--CEEEEecHHHHHH
Confidence            57999999999999999999862     3  3678999887654

>PRK13976 thymidylate kinase; Provisional

Probab=97.61  E-value=0.0022  Score=63.13  Aligned_cols=27  Identities=26%  Similarity=0.481  Sum_probs=24.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ++|++-|+-||||||+++.|++.+...
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~   27 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDI   27 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            479999999999999999999998654

>PRK05439 pantothenate kinase; Provisional

Probab=97.59  E-value=9.5e-05  Score=77.21  Aligned_cols=48  Identities=21%  Similarity=0.254  Sum_probs=39.2

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCceeeeh
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyfr~~  227 (535)
                      ...+.+|.|+|.|||||||+|+.|.+.+... .+..+.++++|+|+...
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~  131 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN  131 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH
Confidence            4578999999999999999999999876543 23457789999998654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.58  E-value=0.00019  Score=62.63  Aligned_cols=22  Identities=41%  Similarity=0.750  Sum_probs=20.4

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |+|.|.||+||||+|+.+++.+
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            7899999999999999999874

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR00959 ffh signal recognition particle protein

Probab=97.58  E-value=0.0005  Score=74.73  Aligned_cols=45  Identities=24%  Similarity=0.245  Sum_probs=35.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ..+.+|+++|++||||||+|..|+.++....|..+.+++.|-|+.
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~  141 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP  141 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence            457899999999999999999999886533355677888887654

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.57  E-value=0.0073  Score=68.47  Aligned_cols=39  Identities=18%  Similarity=0.304  Sum_probs=27.0

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCcee
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYF  224 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyf  224 (535)
                      |+|+|.+|+|||+|++.|+.++... .+..+..++.+++.
T Consensus       317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~  356 (617)
T PRK14086        317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT  356 (617)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            7999999999999999999876532 12233344444443

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.54  E-value=4.4e-05  Score=69.92  Aligned_cols=23  Identities=39%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +|+|+|++|||||||++.|.+.+
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcC
Confidence            47899999999999999998753

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PLN02199 shikimate kinase

Probab=97.54  E-value=0.0003  Score=73.18  Aligned_cols=38  Identities=24%  Similarity=0.405  Sum_probs=30.5

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ..|+|+|++||||||+++.|++.+    |  ..++..|.++...
T Consensus       103 ~~I~LIG~~GSGKSTVgr~LA~~L----g--~~fIDtD~lIe~~  140 (303)
T PLN02199        103 RSMYLVGMMGSGKTTVGKLMSKVL----G--YTFFDCDTLIEQA  140 (303)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh----C--CCEEehHHHHHHH
Confidence            378999999999999999999875    2  2466888877654

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.52  E-value=0.00047  Score=67.38  Aligned_cols=40  Identities=28%  Similarity=0.392  Sum_probs=32.0

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      +..+++|.|+|-+||||||+++.|.+.     |  ..|++.|.+.+.
T Consensus         2 ~~~~~~igitG~igsGKSt~~~~l~~~-----g--~~v~d~D~i~~~   41 (208)
T PRK14731          2 RSLPFLVGVTGGIGSGKSTVCRFLAEM-----G--CELFEADRVAKE   41 (208)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHC-----C--CeEEeccHHHHH
Confidence            345689999999999999999999863     2  467888876543

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.52  E-value=9.1e-05  Score=70.86  Aligned_cols=39  Identities=31%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      +|.|+|.+||||||||+.|...+   ++..+.+++.|+|+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l---~~~~~~v~~~D~~~~~   39 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL---GNPKVVIISQDSYYKD   39 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh---CCCCeEEEEecccccc
Confidence            58899999999999999999875   2334678899998754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=97.51  E-value=0.0017  Score=63.83  Aligned_cols=23  Identities=35%  Similarity=0.355  Sum_probs=21.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +|++-|.-||||||+++.|++.+
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l   23 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKL   23 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999875

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.49  E-value=0.00055  Score=77.08  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ..+++|.|+|.+||||||||+.|+..+    . ...+++.|+|..
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglL----p-~vgvIsmDdy~~  102 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFM----P-SIAVISMDNYND  102 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhC----C-CcEEEEEcceec
Confidence            457899999999999999999999764    1 345789999853

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.48  E-value=0.0015  Score=64.30  Aligned_cols=38  Identities=39%  Similarity=0.421  Sum_probs=32.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .++|.|+|-+||||||+|+.+.+.     |  ..|+++|++.+..
T Consensus         2 ~~iIglTG~igsGKStva~~~~~~-----G--~~vidaD~v~r~~   39 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAEL-----G--FPVIDADDVAREV   39 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHc-----C--CeEEEccHHHHHH
Confidence            468999999999999999999963     3  4588999998843

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=97.47  E-value=0.00075  Score=66.77  Aligned_cols=43  Identities=26%  Similarity=0.368  Sum_probs=36.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVE  229 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e  229 (535)
                      +-+||-|.|...|||||||+.|.+.+-     .+.+++-||+|....+
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~-----~~~lIhqDDFyKp~~E   45 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFP-----GCSLIHQDDFYKPENE   45 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHcc-----CCeeeccccccCchhh
Confidence            457899999999999999999999862     3568899999987654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.47  E-value=0.00053  Score=74.77  Aligned_cols=44  Identities=30%  Similarity=0.298  Sum_probs=36.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ..+.+|+|+|++|+||||+|..|+.++.+. |..+.+++.|.|+.
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~kV~lV~~D~~R~  136 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTYRP  136 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEecCCCCCH
Confidence            468899999999999999999999888765 44667778887654

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=97.46  E-value=0.00081  Score=66.29  Aligned_cols=40  Identities=20%  Similarity=0.226  Sum_probs=32.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .+++|.|+|-+||||||+++.|.+.+    |  ..+++.|.+.+..
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~l----g--~~vidaD~i~~~l   44 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKL----N--LNVVCADTISREI   44 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHc----C--CeEEeccHHHHHH
Confidence            45789999999999999999998643    3  3477888886654

>PRK04296 thymidine kinase; Provisional

Probab=97.44  E-value=0.0013  Score=63.49  Aligned_cols=110  Identities=18%  Similarity=0.080  Sum_probs=60.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC--CceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM--DDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~--DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      .+++++|.+||||||+|..++.++... +..+.++..  |.- .... .+.    + ..|..         +..+.+.  
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~~~d~~-~~~~-~i~----~-~lg~~---------~~~~~~~--   63 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKPAIDDR-YGEG-KVV----S-RIGLS---------REAIPVS--   63 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEecccccc-ccCC-cEe----c-CCCCc---------ccceEeC--
Confidence            589999999999999998888776544 334444421  210 0000 000    0 00100         0000010  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEAT  318 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~  318 (535)
                          ....+++.+..  ..+.+.+||||-. ++..++..++.+.++..|+.|++.-..
T Consensus        64 ----~~~~~~~~~~~--~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~  115 (190)
T PRK04296         64 ----SDTDIFELIEE--EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD  115 (190)
T ss_pred             ----ChHHHHHHHHh--hCCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence                01122222232  4555678999964 455666788888988899888777665

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=97.44  E-value=0.00068  Score=66.07  Aligned_cols=37  Identities=35%  Similarity=0.305  Sum_probs=30.1

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .+|.|+|-+||||||+++.|...     |  ..+++.|++.+..
T Consensus         2 ~~igitG~igsGKst~~~~l~~~-----g--~~vid~D~i~~~~   38 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSSE-----G--FLIVDADQVARDI   38 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC-----C--CeEEeCcHHHHHH
Confidence            47999999999999999999852     3  3688999876544

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=97.42  E-value=0.00052  Score=66.86  Aligned_cols=36  Identities=33%  Similarity=0.334  Sum_probs=29.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +|.++|-+||||||+++.|.+.     |  ..+++.|++.+..
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~-----g--~~~i~~D~i~~~~   36 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEEL-----G--AFGISADRLAKRY   36 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHHC-----C--CEEEecchHHHHH
Confidence            5889999999999999988752     3  4677889886654

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.42  E-value=0.0014  Score=71.32  Aligned_cols=44  Identities=20%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      .+.+|+++|++||||||+|.+|+..+....|..+.++..|.++.
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~  265 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI  265 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence            46789999999999999999998654222244555667776554

>PLN02842 nucleotide kinase

Probab=97.37  E-value=0.00065  Score=75.17  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=28.8

Q ss_pred             EEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432          187 ILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       187 IL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~  228 (535)
                      +|.|.|||||||+|+.|++++    +  ..+++.+|+++.+.
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~l----g--~~hIs~gdLLR~ev   36 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKF----G--LVHISTGDLLRAEV   36 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHh----C--CCEEEccHHHHHHh
Confidence            579999999999999999875    2  34567888887653

>PRK14974 cell division protein FtsY; Provisional

Probab=97.34  E-value=0.0016  Score=68.80  Aligned_cols=42  Identities=24%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      .+.+|+|+|.+|+||||++.+|+..+...| ..+.++..|-|+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g-~~V~li~~Dt~R  180 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG-FSVVIAAGDTFR  180 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEecCCcCc
Confidence            478999999999999999999988876654 344455555444

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.33  E-value=0.00017  Score=62.71  Aligned_cols=22  Identities=50%  Similarity=0.697  Sum_probs=20.5

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |+|.|.|||||||+|+.|.+.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999874

...

>PRK06761 hypothetical protein; Provisional

Probab=97.31  E-value=0.0025  Score=65.90  Aligned_cols=26  Identities=54%  Similarity=0.715  Sum_probs=23.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ..+|+|+|+|||||||+++.|.+.+.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~   28 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILS   28 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35899999999999999999998864

>cd01394 radB RadB

Probab=97.30  E-value=0.0015  Score=63.31  Aligned_cols=41  Identities=22%  Similarity=0.217  Sum_probs=29.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      +...++++.|.|||||||||.+++......++ .+..++.+.
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~-~v~yi~~e~   57 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGK-KVAYIDTEG   57 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEECCC
Confidence            34569999999999999999999876654433 344445443

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.30  E-value=0.00096  Score=65.37  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=30.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ...+++|+|.||+|||+||.+++.......+..+..++.+.
T Consensus        12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~   52 (242)
T cd00984          12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM   52 (242)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence            45699999999999999999987666554244445556544

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.30  E-value=0.00039  Score=72.03  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=37.1

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcC-CCCcEEEeCCceeeeh
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENG-GDAPRIHSMDDYFMTE  227 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g-G~~~rIlS~DDyfr~~  227 (535)
                      ...+.+|.|+|.+||||||||+.|...+.... +..+.+++.|+|....
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~  107 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPN  107 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccH
Confidence            45789999999999999999999987764321 2246788999987643

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=97.24  E-value=0.00071  Score=65.32  Aligned_cols=37  Identities=35%  Similarity=0.410  Sum_probs=30.5

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ++|.|+|-.||||||+++.|.++     |  ..+++.|.+.+..
T Consensus         1 ~iIglTG~igsGKStv~~~l~~~-----G--~~vidaD~i~~~l   37 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAEL-----G--FPVIDADEIAHEL   37 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT-----T---EEEEHHHHHHHC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHC-----C--CCEECccHHHHHH
Confidence            58999999999999999999873     3  4688999886654

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK15453 phosphoribulokinase; Provisional

Probab=97.23  E-value=0.00045  Score=71.52  Aligned_cols=44  Identities=14%  Similarity=0.259  Sum_probs=35.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      .++.+|.++|.|||||||+|+.|++.+... +..+.+++.|+|.+
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~-~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRE-NINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeEEEecccccc
Confidence            456799999999999999999999876432 33467889999886

>PLN02422 dephospho-CoA kinase

Probab=97.23  E-value=0.0014  Score=65.96  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~  228 (535)
                      +|.|+|-+||||||+++.|.++     |  ..+++.|++.+...
T Consensus         3 ~igltG~igsGKstv~~~l~~~-----g--~~~idaD~~~~~l~   39 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFKSS-----G--IPVVDADKVARDVL   39 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----C--CeEEehhHHHHHHH
Confidence            7999999999999999999853     3  46889999977653

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.23  E-value=0.0036  Score=62.18  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=28.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ...++++.|.||||||+||.+++...... |..+..++.++
T Consensus        20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee   59 (237)
T TIGR03877        20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEE   59 (237)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeC
Confidence            45699999999999999999876543333 44555555544

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.22  E-value=0.0027  Score=61.04  Aligned_cols=41  Identities=22%  Similarity=0.253  Sum_probs=29.8

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      +...++.++|.||||||+||.+++......+ ..+..++.+.
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g-~~v~yi~~e~   50 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAARQG-KKVVYIDTEG   50 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCC-CeEEEEECCC
Confidence            4567999999999999999999887655543 3344445543

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.20  E-value=0.00028  Score=57.35  Aligned_cols=23  Identities=43%  Similarity=0.515  Sum_probs=21.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +|+++|.|||||||+|+.|.+.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999875

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=97.19  E-value=0.0028  Score=65.59  Aligned_cols=76  Identities=22%  Similarity=0.244  Sum_probs=47.8

Q ss_pred             EEEEeCCCCC-HHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh-----hcC-----CCCHHHHHHHhhccccCC-ccc
Q 009432          285 IVIVDDRNLR-VADFAQFWATAKRSGYEVYILEATYKDPAGCAAR-----NVH-----GFTLDDIERMAGQWEEAP-TLY  352 (535)
Q Consensus       285 ~VIVDaTN~~-~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R-----Nih-----~VpeEvIe~M~krfE~~p-~~y  352 (535)
                      -|+||..... .....+.+.-.++.++.+.++++++ +.+++++|     ..|     +...|.|++=.+.+++.- .--
T Consensus        55 Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA-~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad  133 (284)
T PF03668_consen   55 AIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDA-SDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERAD  133 (284)
T ss_pred             EEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEEC-ChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCC
Confidence            5788986543 2334444444455688888888887 55666664     445     233566777666666543 223


Q ss_pred             eeecCCCCc
Q 009432          353 LQLDIKTLF  361 (535)
Q Consensus       353 ~~lD~~sll  361 (535)
                      ..+|++.|.
T Consensus       134 ~vIDTs~l~  142 (284)
T PF03668_consen  134 LVIDTSNLS  142 (284)
T ss_pred             EEEECCCCC
Confidence            568888887

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.18  E-value=0.0031  Score=64.56  Aligned_cols=45  Identities=18%  Similarity=0.243  Sum_probs=34.7

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ...+.+|+|+|++|+||||++.+|+..+.+.| ..+.++..|-|+.
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~~D~~r~  113 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAAGDTFRA  113 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEeCCCCCH
Confidence            34567888999999999999999998876654 4556677776544

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.12  E-value=0.0059  Score=61.76  Aligned_cols=40  Identities=18%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      +...+++++|.||+|||+||.+++.....+ |..+..++.+
T Consensus        34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~E   73 (259)
T TIGR03878        34 PAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVE   73 (259)
T ss_pred             ECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEec
Confidence            456799999999999999999987654444 3344444543

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.10  E-value=0.012  Score=63.95  Aligned_cols=44  Identities=16%  Similarity=0.060  Sum_probs=34.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ..+.+|+|+|+.|+||||++..|+..+... |..+.+++.|-++.
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt~Ri  282 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRI  282 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCCcch
Confidence            345789999999999999999999887654 34556778887663

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.10  E-value=0.0012  Score=57.97  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=20.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ...++++.|.+|+|||++++.+.+.+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~   29 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLN   29 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence            456899999999999999999988654

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.08  E-value=0.0036  Score=61.06  Aligned_cols=49  Identities=24%  Similarity=0.183  Sum_probs=33.6

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      +|++|...    -+...++++.|.||||||+||.+++......+ ..+..++.+
T Consensus        12 lD~~l~GG----i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~-~~v~yi~~e   60 (225)
T PRK09361         12 LDELLGGG----FERGTITQIYGPPGSGKTNICLQLAVEAAKNG-KKVIYIDTE   60 (225)
T ss_pred             HHHHhcCC----CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEECC
Confidence            45666432    13566999999999999999999987665543 344444444

>PRK07933 thymidylate kinase; Validated

Probab=97.07  E-value=0.0044  Score=61.04  Aligned_cols=28  Identities=29%  Similarity=0.515  Sum_probs=24.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      ++|++.|+-||||||+++.|.+.+...|
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g   28 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARG   28 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            4799999999999999999999987653

>PHA00729 NTP-binding motif containing protein

Probab=97.07  E-value=0.0031  Score=63.31  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-|+|.|-||+||||||..|+..+
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999999875

>PLN02165 adenylate isopentenyltransferase

Probab=97.05  E-value=0.0064  Score=64.29  Aligned_cols=36  Identities=25%  Similarity=0.293  Sum_probs=29.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      ...+|+|+|++||||||||..|+..+   +   ..|++.|.+
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l---~---~eIIsaDs~   77 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRF---P---SEIINSDKM   77 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHc---C---CceecCChh
Confidence            34489999999999999999999864   2   257788876

>PF05729 NACHT: NACHT domain

Probab=97.05  E-value=0.011  Score=53.40  Aligned_cols=26  Identities=35%  Similarity=0.532  Sum_probs=23.1

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      +++|.|.||+||||+++.++..+...
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~   27 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEE   27 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhc
Confidence            78999999999999999999876554

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=97.05  E-value=0.0058  Score=60.55  Aligned_cols=30  Identities=30%  Similarity=0.578  Sum_probs=26.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      ..++|++=|+=||||||.++.|.+++.+.|
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g   31 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERG   31 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            457999999999999999999999987664

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.05  E-value=0.0088  Score=60.18  Aligned_cols=30  Identities=33%  Similarity=0.616  Sum_probs=24.5

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .+...-+++.|.||+||||+|+.+++.+..
T Consensus        39 ~~~~~~vll~GppGtGKTtlA~~ia~~l~~   68 (261)
T TIGR02881        39 SKQVLHMIFKGNPGTGKTTVARILGKLFKE   68 (261)
T ss_pred             CCCcceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            344456889999999999999999987644

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.03  E-value=0.0042  Score=67.52  Aligned_cols=43  Identities=21%  Similarity=0.216  Sum_probs=34.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHH-HcCCCCcEEEeCCceee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEV-ENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~-e~gG~~~rIlS~DDyfr  225 (535)
                      ..+|+++|++|+||||++.+|+.++. ..++..+.+++.|.++.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~  264 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI  264 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence            45889999999999999999987765 44556677888888764

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.02  E-value=0.0058  Score=57.07  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=27.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      +++|.|.||+|||+||.+++.....+| ..+..++.++
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~   37 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEE   37 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCC
Confidence            478999999999999999876655443 4555566543

A related protein is found in archaea.

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.01  E-value=0.0025  Score=66.52  Aligned_cols=36  Identities=28%  Similarity=0.259  Sum_probs=29.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      .+.+|+++|++|||||+||..|++.+   +   ..|+|.|.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~---~---~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRL---N---GEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhC---C---CcEEecccc
Confidence            35699999999999999999999864   2   357898884

>PF13173 AAA_14: AAA domain

Probab=97.00  E-value=0.0034  Score=56.33  Aligned_cols=25  Identities=36%  Similarity=0.369  Sum_probs=22.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+++|.|+.|+||||+++++.+.+
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~   26 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDL   26 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998765

>TIGR02012 tigrfam_recA protein RecA

Probab=96.99  E-value=0.0039  Score=65.56  Aligned_cols=32  Identities=28%  Similarity=0.290  Sum_probs=25.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      +...++.++|.|||||||||-+++......|+
T Consensus        53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~   84 (321)
T TIGR02012        53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGG   84 (321)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            45569999999999999999987766555544

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.97  E-value=0.0079  Score=56.70  Aligned_cols=27  Identities=30%  Similarity=0.359  Sum_probs=22.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ...++++.|.||+|||||+-.++..+.
T Consensus        31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~   57 (193)
T PF13481_consen   31 RGELTLIAGPPGSGKTTLALQLAAALA   57 (193)
T ss_dssp             TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            344899999999999999999877654

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.96  E-value=0.00088  Score=68.94  Aligned_cols=40  Identities=18%  Similarity=0.392  Sum_probs=33.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      +|.++|.+||||||+|++|.+.+... +..+.+++.|+|++
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~-g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFARE-GIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhc-CCceEEEecccccc
Confidence            58899999999999999999887543 34567889999987

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.95  E-value=0.01  Score=51.07  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=22.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ...+++.|.||+||||+++.+...+.
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            34789999999999999999998653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.95  E-value=0.011  Score=58.14  Aligned_cols=41  Identities=20%  Similarity=0.320  Sum_probs=29.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      +...++++.|.|||||||||.+++.....+ |..+..++.++
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~   63 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTEN   63 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCC
Confidence            456689999999999999999986544444 34555555544

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=96.95  E-value=0.0016  Score=60.73  Aligned_cols=30  Identities=30%  Similarity=0.313  Sum_probs=23.7

Q ss_pred             CCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          192 PGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       192 PGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      |||||||+++.|++.+.      ...+..|+++...
T Consensus         1 ~GsGKStvg~~lA~~L~------~~fiD~D~~i~~~   30 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLG------RPFIDLDDEIEER   30 (158)
T ss_dssp             TTSSHHHHHHHHHHHHT------SEEEEHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhC------CCccccCHHHHHH
Confidence            79999999999999872      2566888876543

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=96.95  E-value=0.017  Score=54.64  Aligned_cols=24  Identities=33%  Similarity=0.605  Sum_probs=21.0

Q ss_pred             EEccCCChHHHHHHHHHHHHHHcC
Q 009432          188 LRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       188 L~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      +=|+-||||||+++.|.+++.+.|
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~   24 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKG   24 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcC
Confidence            359999999999999999987664

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>CHL00181 cbbX CbbX; Provisional

Probab=96.93  E-value=0.014  Score=60.18  Aligned_cols=28  Identities=25%  Similarity=0.452  Sum_probs=23.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ..-|++.|.||+||||+|+.+++.+...
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~~~~~   86 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADILYKL   86 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4558999999999999999998876543

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.93  E-value=0.0034  Score=59.83  Aligned_cols=37  Identities=30%  Similarity=0.514  Sum_probs=28.3

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      =||++|-||+||||||.+|++.+    +  ..-+++.|+....
T Consensus         9 NILvtGTPG~GKstl~~~lae~~----~--~~~i~isd~vkEn   45 (176)
T KOG3347|consen    9 NILVTGTPGTGKSTLAERLAEKT----G--LEYIEISDLVKEN   45 (176)
T ss_pred             CEEEeCCCCCCchhHHHHHHHHh----C--CceEehhhHHhhh
Confidence            37889999999999999999764    2  2344677776654

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.93  E-value=0.0092  Score=58.21  Aligned_cols=25  Identities=24%  Similarity=0.159  Sum_probs=21.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|.||||||+||.+++..
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~l~~~   42 (235)
T cd01123          18 TGSITEIFGEFGSGKTQLCHQLAVT   42 (235)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4569999999999999999998743

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.91  E-value=0.02  Score=58.02  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=21.1

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      .=++++|.+|||||||.+.|...+.
T Consensus        14 fr~viIG~sGSGKT~li~~lL~~~~   38 (241)
T PF04665_consen   14 FRMVIIGKSGSGKTTLIKSLLYYLR   38 (241)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhc
Confidence            3478899999999999999987653

This is thought to be an ATPase involved in viral DNA packaging [].

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.91  E-value=0.007  Score=58.68  Aligned_cols=26  Identities=23%  Similarity=0.094  Sum_probs=22.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|.|.||||||+||.+++...
T Consensus        18 ~g~v~~I~G~~GsGKT~l~~~ia~~~   43 (226)
T cd01393          18 TGRITEIFGEFGSGKTQLCLQLAVEA   43 (226)
T ss_pred             CCcEEEEeCCCCCChhHHHHHHHHHh
Confidence            45699999999999999999987654

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.90  E-value=0.0047  Score=65.06  Aligned_cols=32  Identities=28%  Similarity=0.270  Sum_probs=25.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      +...++.++|.|||||||||-+++......|+
T Consensus        53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~   84 (325)
T cd00983          53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGG   84 (325)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            34559999999999999999998766555544

RecA couples ATP hydrolysis to DNA strand exchange.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.89  E-value=0.0088  Score=61.43  Aligned_cols=28  Identities=21%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ..-|++.|.||+||||+|+.+++.+...
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~   85 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQILHRL   85 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            3458999999999999999998876544

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK06893 DNA replication initiation factor; Validated

Probab=96.88  E-value=0.011  Score=58.45  Aligned_cols=27  Identities=26%  Similarity=0.228  Sum_probs=23.3

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      .++|+|.||+|||||++.++..+.+.+
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~~~~   67 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ   67 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            689999999999999999998765543

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.87  E-value=0.018  Score=62.17  Aligned_cols=44  Identities=20%  Similarity=0.180  Sum_probs=35.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ..+.+|+|+|+.|+||||++..|+..+... +..+.+++.|.|+.
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDtyR~  247 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTFRS  247 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCccCc
Confidence            346799999999999999999998877655 34567788888765

>PLN02796 D-glycerate 3-kinase

Probab=96.87  E-value=0.0013  Score=69.76  Aligned_cols=46  Identities=24%  Similarity=0.304  Sum_probs=36.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ..+++|.|+|.+|||||||++.|...+... +....+++.||+....
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~-g~~~g~IsiDdfYLt~  143 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNAT-GRRAASLSIDDFYLTA  143 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhccc-CCceeEEEECCcccch
Confidence            467999999999999999999999876432 3345677899988643

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.86  E-value=0.01  Score=62.16  Aligned_cols=43  Identities=21%  Similarity=0.296  Sum_probs=33.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      ..+.+|+|+|++||||||++..|+..+...+ ..+.++..|-++
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~~D~~r  154 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAAGDTFR  154 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEecCccc
Confidence            4578999999999999999999998887654 345566666444

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.84  E-value=0.015  Score=62.60  Aligned_cols=46  Identities=24%  Similarity=0.246  Sum_probs=36.1

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHc---CCCCcEEEeCCceeee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN---GGDAPRIHSMDDYFMT  226 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~---gG~~~rIlS~DDyfr~  226 (535)
                      ..+.+|+|+|..|+||||.+.+|+..+...   .+..+.+++.|.|+..
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~a  220 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIG  220 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHH
Confidence            456799999999999999999998876532   2456778888987654

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.0071  Score=65.02  Aligned_cols=131  Identities=18%  Similarity=0.213  Sum_probs=72.7

Q ss_pred             CCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc-c
Q 009432          179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY-C  257 (535)
Q Consensus       179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey-~  257 (535)
                      ...++.+|+++||-||||||.+-+++-++...| ..+-+++.|.|+....+-+.      .+. .+.      ++.-| .
T Consensus        97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG-~K~~LvcaDTFRagAfDQLk------qnA-~k~------~iP~ygs  162 (483)
T KOG0780|consen   97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKG-YKVALVCADTFRAGAFDQLK------QNA-TKA------RVPFYGS  162 (483)
T ss_pred             ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcC-CceeEEeecccccchHHHHH------HHh-Hhh------CCeeEec
Confidence            356889999999999999999999999887665 45567787766543322110      000 000      01111 1


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCC---HHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH
Q 009432          258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLR---VADFAQFWATAKRSGYEVYILEATYKDPAGCAA  327 (535)
Q Consensus       258 y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~---~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~  327 (535)
                      |....   ......+.+.+ .+..+|.+||||..--.   .+-+.+.+++++..+=.-+++.++.+--+.|..
T Consensus       163 yte~d---pv~ia~egv~~-fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~  231 (483)
T KOG0780|consen  163 YTEAD---PVKIASEGVDR-FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA  231 (483)
T ss_pred             ccccc---hHHHHHHHHHH-HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH
Confidence            22111   11111222333 33344789999974332   355677777777766444555565432245544

>PHA03132 thymidine kinase; Provisional

Probab=96.82  E-value=0.12  Score=58.53  Aligned_cols=26  Identities=23%  Similarity=0.428  Sum_probs=23.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..++|+|-|.-||||||+++.|++.+
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~l  281 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGIL  281 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHh
Confidence            36899999999999999999999875

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.81  E-value=0.0073  Score=60.41  Aligned_cols=39  Identities=21%  Similarity=0.114  Sum_probs=27.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ..++++.|.||+|||||+.+++..+....|..+..++.+
T Consensus        30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E   68 (271)
T cd01122          30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE   68 (271)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence            348999999999999999998776544323344455544

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.80  E-value=0.0016  Score=70.91  Aligned_cols=45  Identities=24%  Similarity=0.316  Sum_probs=35.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ..++||.|.|.+|||||||++.|...+... +....+++.|||...
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~-g~~vgvISiDDfYLt  254 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVT-GRKSATLSIDDFYLT  254 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhccc-CCceEEEEECCccCC
Confidence            367999999999999999999998765332 334567899999864

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.79  E-value=0.013  Score=58.44  Aligned_cols=26  Identities=19%  Similarity=0.148  Sum_probs=22.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      .++|+|.+|+|||||++.++..+...
T Consensus        47 ~l~l~Gp~G~GKThLl~a~~~~~~~~   72 (235)
T PRK08084         47 YIYLWSREGAGRSHLLHAACAELSQR   72 (235)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            68999999999999999998776543

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.79  E-value=0.0052  Score=59.59  Aligned_cols=22  Identities=41%  Similarity=0.835  Sum_probs=20.3

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ++|+++|-||.||||+|++|++
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~~   22 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLRE   22 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHHH
Confidence            4799999999999999999994

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=96.78  E-value=0.0099  Score=60.25  Aligned_cols=38  Identities=24%  Similarity=0.212  Sum_probs=31.0

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ++|.|+|-.||||||+++.|.+.+    |  ..|++.|.+.+..
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~----G--~~viDaD~iar~l   39 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEH----H--IEVIDADLVVREL   39 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc----C--CeEEehHHHHHHH
Confidence            479999999999999999999642    2  4678999886654

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=96.78  E-value=0.012  Score=64.58  Aligned_cols=20  Identities=20%  Similarity=0.461  Sum_probs=13.3

Q ss_pred             EEEEcc-CCChHHHHHHHHHH
Q 009432          186 IILRGL-PGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GL-PGSGKSTLAr~L~e  205 (535)
                      +=..++ .|.|..-|...|+.
T Consensus       484 ve~t~~~~~dgR~~LmaqIRq  504 (569)
T KOG3671|consen  484 VETTALSSGDGRDALMAQIRQ  504 (569)
T ss_pred             eeeccCcCcccHHHHHHHHHh
Confidence            334444 47788888888873

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.78  E-value=0.025  Score=54.87  Aligned_cols=24  Identities=29%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      +|+++|.+||||||+++.|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            799999999999999999887754

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.77  E-value=0.012  Score=65.03  Aligned_cols=67  Identities=15%  Similarity=0.186  Sum_probs=42.5

Q ss_pred             HcCCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhc----CCCCHHHHHHHhhccc
Q 009432          279 DEGNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNV----HGFTLDDIERMAGQWE  346 (535)
Q Consensus       279 k~G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNi----h~VpeEvIe~M~krfE  346 (535)
                      ..|.+.++|||-. .........+++...+....++||.++. ..    .+.+.|-.    +.++.+.|..+.++..
T Consensus       118 ~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTt-e~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~  193 (484)
T PRK14956        118 MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATT-EFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLC  193 (484)
T ss_pred             hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecC-ChhhccHHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence            3455679999964 4456677777777777666777776653 32    33444533    3777777776665543

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.75  E-value=0.00095  Score=56.70  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=21.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..++|+|.|||||||+++.|+..+
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcc
Confidence            478999999999999999998765

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.73  E-value=0.007  Score=59.08  Aligned_cols=38  Identities=26%  Similarity=0.320  Sum_probs=25.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEe
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHS  219 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS  219 (535)
                      ...++++.|.||||||+||.+++.....+.|..+..++
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs   55 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS   55 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence            44599999999999999999976544444133443334

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.73  E-value=0.011  Score=68.43  Aligned_cols=65  Identities=20%  Similarity=0.305  Sum_probs=38.4

Q ss_pred             cCCceEEEEeCCC-CCHHHHHHHHHHHhhcCceEEEEEEecCCHH--------HHHHhhcCCCCHHHHHHHhhcc
Q 009432          280 EGNFTIVIVDDRN-LRVADFAQFWATAKRSGYEVYILEATYKDPA--------GCAARNVHGFTLDDIERMAGQW  345 (535)
Q Consensus       280 ~G~f~~VIVDaTN-~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e--------~ci~RNih~VpeEvIe~M~krf  345 (535)
                      .|++.++|||... ++......+++..++..-.++||.++. +..        .|..=+.+.++.+.|.....+.
T Consensus       117 ~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt-d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~I  190 (830)
T PRK07003        117 DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT-DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERI  190 (830)
T ss_pred             cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC-ChhhccchhhhheEEEecCCcCHHHHHHHHHHH
Confidence            4556799999744 445566777777777665666666553 332        2333233467766666555443

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.72  E-value=0.0022  Score=65.71  Aligned_cols=45  Identities=24%  Similarity=0.234  Sum_probs=36.8

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyfr  225 (535)
                      ..+.+|+|+|+.|+||||++..|+.++... |+..+.+++.|.|+.
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~  237 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI  237 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence            456799999999999999999999887655 445677888887764

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.72  E-value=0.015  Score=66.39  Aligned_cols=66  Identities=21%  Similarity=0.310  Sum_probs=42.3

Q ss_pred             HcCCceEEEEeCCC-CCHHHHHHHHHHHhhcCceEEEEEEecCCHH--------HHHHhhcCCCCHHHHHHHhhcc
Q 009432          279 DEGNFTIVIVDDRN-LRVADFAQFWATAKRSGYEVYILEATYKDPA--------GCAARNVHGFTLDDIERMAGQW  345 (535)
Q Consensus       279 k~G~f~~VIVDaTN-~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e--------~ci~RNih~VpeEvIe~M~krf  345 (535)
                      ..|++.++|||-.. .+......+++...+..-.++||.++. ++.        .|..-....++.+.|.....+.
T Consensus       121 ~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt-ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~I  195 (700)
T PRK12323        121 TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT-DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAI  195 (700)
T ss_pred             hcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC-ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHH
Confidence            35667899999643 445666777777777666677777764 332        3544444577777777665544

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.70  E-value=0.0043  Score=66.68  Aligned_cols=40  Identities=20%  Similarity=0.247  Sum_probs=30.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      ..+.+++|.|+||+|||.+|++|+..+    |..+.+++..+++
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~el----g~~~i~vsa~eL~  185 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKM----GIEPIVMSAGELE  185 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHc----CCCeEEEEHHHhh
Confidence            567899999999999999999999764    3444454544433

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.70  E-value=0.0067  Score=57.93  Aligned_cols=22  Identities=36%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +|++.|.|||||||+|..++..
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~   24 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQ   24 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHH
Confidence            6899999999999999999865

>TIGR00416 sms DNA repair protein RadA

Probab=96.68  E-value=0.0053  Score=67.26  Aligned_cols=30  Identities=27%  Similarity=0.266  Sum_probs=25.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      ...+++|.|-||+|||||+.+++..+...+
T Consensus        93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g  122 (454)
T TIGR00416        93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ  122 (454)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            455999999999999999999987665554

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK04328 hypothetical protein; Provisional

Probab=96.67  E-value=0.021  Score=57.50  Aligned_cols=49  Identities=20%  Similarity=0.320  Sum_probs=32.6

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      .|++|..-    -+...++++.|.||||||+||.+++.....+ |..+..++.+
T Consensus        12 LD~lL~GG----ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~e   60 (249)
T PRK04328         12 MDEILYGG----IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALE   60 (249)
T ss_pred             HHHHhcCC----CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEee
Confidence            45665432    1345599999999999999999876554444 4455555543

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=96.67  E-value=0.01  Score=60.85  Aligned_cols=41  Identities=29%  Similarity=0.266  Sum_probs=33.0

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      +..+++|++-|.||.||||+|..|+.++    |. ..+++.|-++.
T Consensus        86 ~~~p~IILIGGasGVGkStIA~ElA~rL----gI-~~visTD~IRE  126 (299)
T COG2074          86 MKRPLIILIGGASGVGKSTIAGELARRL----GI-RSVISTDSIRE  126 (299)
T ss_pred             cCCCeEEEecCCCCCChhHHHHHHHHHc----CC-ceeecchHHHH
Confidence            4678999999999999999999999875    43 35667775543

>PRK12377 putative replication protein; Provisional

Probab=96.66  E-value=0.0058  Score=61.96  Aligned_cols=38  Identities=21%  Similarity=0.433  Sum_probs=28.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      .-++|.|.||+||||||.+|+..+... |..+..++..+
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~~~  139 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTVPD  139 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEHHH
Confidence            478999999999999999999887655 33444434333

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.66  E-value=0.016  Score=56.24  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=23.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      +++|.|.||+||||+.+.+.+.+...
T Consensus        20 ~~~l~G~aGtGKT~~l~~~~~~~~~~   45 (196)
T PF13604_consen   20 VSVLQGPAGTGKTTLLKALAEALEAA   45 (196)
T ss_dssp             EEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            78889999999999999998877654

>PLN02840 tRNA dimethylallyltransferase

Probab=96.65  E-value=0.0074  Score=65.65  Aligned_cols=45  Identities=24%  Similarity=0.255  Sum_probs=33.9

Q ss_pred             cCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          173 KQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       173 ~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      ..++...+.+..+|+|+|++||||||||..|++.+   +   ..|++.|.+
T Consensus        11 ~~~~~~~~~~~~vi~I~GptgsGKTtla~~La~~~---~---~~iis~Ds~   55 (421)
T PLN02840         11 SGSGASKTKKEKVIVISGPTGAGKSRLALELAKRL---N---GEIISADSV   55 (421)
T ss_pred             CCCccccccCCeEEEEECCCCCCHHHHHHHHHHHC---C---CCeEecccc
Confidence            34444445667799999999999999999999875   2   246788764

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=96.64  E-value=0.015  Score=59.67  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=45.0

Q ss_pred             EEEEeCCCCC-HHHHHHHHHHHhhc-CceEEEEEEecCCHHHHHH-----hhcCCC-----CHHHHHHHhhccccCCccc
Q 009432          285 IVIVDDRNLR-VADFAQFWATAKRS-GYEVYILEATYKDPAGCAA-----RNVHGF-----TLDDIERMAGQWEEAPTLY  352 (535)
Q Consensus       285 ~VIVDaTN~~-~~~R~~f~~LAr~~-G~~V~vIe~~~~d~e~ci~-----RNih~V-----peEvIe~M~krfE~~p~~y  352 (535)
                      -|+||-.+.. .....+++...+.. ++.+.++.+.+ +.+++++     |..|..     -.+.|..-.+-+.+.-...
T Consensus        55 Av~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA-~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A  133 (286)
T COG1660          55 AVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEA-DDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIA  133 (286)
T ss_pred             EEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEEC-chhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHh
Confidence            5788875543 45566667777777 45566666665 5566665     444533     3445554444444433333


Q ss_pred             -eeecCCCCc
Q 009432          353 -LQLDIKTLF  361 (535)
Q Consensus       353 -~~lD~~sll  361 (535)
                       ..+|.+.|.
T Consensus       134 ~~vIDTs~ls  143 (286)
T COG1660         134 DLVIDTSELS  143 (286)
T ss_pred             hhEeecccCC
Confidence             678888886

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.63  E-value=0.021  Score=65.47  Aligned_cols=25  Identities=36%  Similarity=0.571  Sum_probs=23.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..+|++|.+|+||||+|+.|++.+
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~L   61 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCL   61 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999876

>PRK05973 replicative DNA helicase; Provisional

Probab=96.62  E-value=0.0078  Score=60.78  Aligned_cols=39  Identities=18%  Similarity=0.313  Sum_probs=29.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...+++|.|.||+|||+||-+++.....+ |..+.+++.+
T Consensus        63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlE  101 (237)
T PRK05973         63 PGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLE  101 (237)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEe
Confidence            34499999999999999999987765555 4445555544

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.61  E-value=0.0051  Score=65.86  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=24.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ..+++|.|.||+|||||+.+++..+...
T Consensus        82 GslvLI~G~pG~GKStLllq~a~~~a~~  109 (372)
T cd01121          82 GSVILIGGDPGIGKSTLLLQVAARLAKR  109 (372)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            4599999999999999999998766544

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=96.60  E-value=0.024  Score=55.32  Aligned_cols=40  Identities=20%  Similarity=0.346  Sum_probs=28.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ...++++.|.||+|||+||.+++.....+ |..+..++.++
T Consensus        15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~   54 (224)
T TIGR03880        15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEE   54 (224)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence            35689999999999999999987655444 33444555543

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.56  E-value=0.0023  Score=65.51  Aligned_cols=38  Identities=32%  Similarity=0.377  Sum_probs=30.2

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      +|.|+|.+|||||||++.|+..+..   ....+++.|||..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~---~~~~vi~~Dd~~~   38 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGS---DLVTVICLDDYHS   38 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCC---CceEEEECccccc
Confidence            5789999999999999999987532   2345788898864

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.56  E-value=0.018  Score=67.78  Aligned_cols=67  Identities=24%  Similarity=0.351  Sum_probs=43.3

Q ss_pred             HcCCceEEEEeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhc----CCCCHHHHHHHhhccc
Q 009432          279 DEGNFTIVIVDD-RNLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNV----HGFTLDDIERMAGQWE  346 (535)
Q Consensus       279 k~G~f~~VIVDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNi----h~VpeEvIe~M~krfE  346 (535)
                      ..|++.++|||- -.........+++...+..-.++||.++. +.    .+.+-|-.    +.++.+.|..+..+..
T Consensus       116 ~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT-e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il  191 (944)
T PRK14949        116 SRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT-DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHIL  191 (944)
T ss_pred             hcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC-CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence            346677999995 44556777888888888766677777643 32    23333433    4788887776665443

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.008  Score=63.53  Aligned_cols=24  Identities=38%  Similarity=0.578  Sum_probs=22.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .||+|.|+||.|||+|+|+|++++
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkL  201 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKL  201 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhh
Confidence            589999999999999999999875

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.55  E-value=0.017  Score=64.18  Aligned_cols=67  Identities=16%  Similarity=0.241  Sum_probs=41.9

Q ss_pred             HHcCCceEEEEeCCCC-CHHHHHHHHHHHhhcCceEEEEEEecCCHH--------HHHHhhcCCCCHHHHHHHhhcc
Q 009432          278 LDEGNFTIVIVDDRNL-RVADFAQFWATAKRSGYEVYILEATYKDPA--------GCAARNVHGFTLDDIERMAGQW  345 (535)
Q Consensus       278 Lk~G~f~~VIVDaTN~-~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e--------~ci~RNih~VpeEvIe~M~krf  345 (535)
                      -..|++.++|||.... +......+.+..++.--.+.||.++. ++.        .|..-+...++.+.|.....++
T Consensus       115 p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt-d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~i  190 (509)
T PRK14958        115 PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT-DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHL  190 (509)
T ss_pred             cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC-ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHH
Confidence            3456678999997543 45667777777777655566666653 432        3433344477777776655444

>COG4240 Predicted kinase [General function prediction only]

Probab=96.54  E-value=0.0029  Score=64.03  Aligned_cols=51  Identities=25%  Similarity=0.427  Sum_probs=42.5

Q ss_pred             CCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhc
Q 009432          179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVE  229 (535)
Q Consensus       179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e  229 (535)
                      -+..++++-++|+-||||||+|-.|...+...|+..+.-+|.||++.+..+
T Consensus        46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthad   96 (300)
T COG4240          46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHAD   96 (300)
T ss_pred             hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHH
Confidence            345699999999999999999999988888877655667799999887643

>PRK09354 recA recombinase A; Provisional

Probab=96.54  E-value=0.013  Score=62.33  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=25.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      +...++.++|.+||||||||-+++......|+
T Consensus        58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~   89 (349)
T PRK09354         58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGG   89 (349)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            45569999999999999999987765554544

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.49  E-value=0.0081  Score=64.48  Aligned_cols=45  Identities=22%  Similarity=0.234  Sum_probs=34.1

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyfr  225 (535)
                      ....+|+|+|++|+||||++.+|+..+... |...+.++..|.|+.
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~  180 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRI  180 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence            456789999999999999999998765433 333556777787754

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=96.47  E-value=0.021  Score=55.13  Aligned_cols=136  Identities=20%  Similarity=0.167  Sum_probs=72.8

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcc-ccccc-cccccCCccCCcchhhhhhhcc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEK-VEDSD-VSKSSGSLRSKKPVTKMVMEYC  257 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~-v~~~~-~sk~~g~~r~kk~l~kkv~ey~  257 (535)
                      .++..||||-|-+-||||++|.+|.+...+   .+- .+-+|-|+...... ..... ++...+ .  ..+. +.+....
T Consensus        20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~---pwm-higiD~f~e~lpp~~~d~a~g~~~~~~-v--~~dg-~~~v~v~   91 (205)
T COG3896          20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAE---PWM-HIGIDLFWEALPPEQLDLARGYTWDSA-V--EADG-LEWVTVH   91 (205)
T ss_pred             CCCceEEEecCCCccchhHHHHHHHHHhhc---chh-hhhHHHHHHhCCHHhhccccccccccc-c--ccCC-ceeeEee
Confidence            345559999999999999999999987532   222 22455444322110 00000 000000 0  0000 0011111


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       258 y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                      |.+ ..+.+...+...+...+..|.  .||.|+.-..+.....-..+  -.|+.|.+|=+.| +.|+..+|.
T Consensus        92 ~gp-i~e~~~~~~r~ai~a~ad~G~--~~i~Ddv~~~r~~L~Dc~r~--l~g~~v~~VGV~~-p~E~~~~Re  157 (205)
T COG3896          92 PGP-ILELAMHSRRRAIRAYADNGM--NVIADDVIWTREWLVDCLRV--LEGCRVWMVGVHV-PDEEGARRE  157 (205)
T ss_pred             chh-HHHHHHHHHHHHHHHHhccCc--ceeehhcccchhhHHHHHHH--HhCCceEEEEeec-cHHHHHHHH
Confidence            222 222233344445666778898  99999988775554433333  3478898888887 556655543

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.47  E-value=0.013  Score=58.18  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=21.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-+++|+|.+||||||+++.+...+
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l   67 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRL   67 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence            4478999999999999999998764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK08116 hypothetical protein; Validated

Probab=96.45  E-value=0.015  Score=59.34  Aligned_cols=38  Identities=24%  Similarity=0.441  Sum_probs=28.3

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      .-++|.|.+|+|||+||..|+..+.+. +..+..++..+
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~~~~  152 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVNFPQ  152 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHH
Confidence            468999999999999999999988765 33333334333

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=96.45  E-value=0.0028  Score=70.46  Aligned_cols=40  Identities=18%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .+.+|.+.|++||||||+|+.|++++    |  ..+++.|+|++..
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l----~--~~~~d~g~~YR~~  322 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKL----G--LLYLDTGAMYRAV  322 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc----C--CeEecCCceehHH
Confidence            55799999999999999999999876    2  3577889998864

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.44  E-value=0.0025  Score=67.95  Aligned_cols=29  Identities=24%  Similarity=0.241  Sum_probs=25.3

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ...+.+++|+|+|||||||||+.|+..+.
T Consensus        75 ~~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       75 EERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34578999999999999999999998763

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=96.42  E-value=0.0089  Score=64.33  Aligned_cols=37  Identities=32%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +.|.|+|-.||||||+|+.|+++     |  ..+++.|.+.+..
T Consensus         2 ~~IgltG~igsGKStv~~~L~~~-----G--~~vidaD~i~~~l   38 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAEL-----G--AVVVDADVLAREV   38 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC-----C--CeEEehHHHHHHH
Confidence            36899999999999999999863     2  4578999887653

>PRK05642 DNA replication initiation factor; Validated

Probab=96.41  E-value=0.018  Score=57.39  Aligned_cols=39  Identities=18%  Similarity=0.175  Sum_probs=27.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      -.++|+|.+|+|||||++.++..+... +..+..++.+++
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~-~~~v~y~~~~~~   84 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQR-GEPAVYLPLAEL   84 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEeeHHHH
Confidence            357899999999999999998765544 334444454443

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=96.40  E-value=0.019  Score=57.42  Aligned_cols=119  Identities=18%  Similarity=0.170  Sum_probs=61.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      ..|+||.|.||+|||+||..++..+...++..+..+|.+.-......++-- .   ..+     ..+ .++.    ...+
T Consensus        19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la-~---~s~-----v~~-~~i~----~g~l   84 (259)
T PF03796_consen   19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLA-R---LSG-----VPY-NKIR----SGDL   84 (259)
T ss_dssp             T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHH-H---HHT-----STH-HHHH----CCGC
T ss_pred             CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH-H---hhc-----chh-hhhh----cccc
Confidence            459999999999999999999887766544455555554222111111000 0   000     000 0000    1111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEAT  318 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~  318 (535)
                      ....++.+.+ +...|....  ++|.|....+.......+...+..+..+.+|.++
T Consensus        85 ~~~e~~~~~~-~~~~l~~~~--l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID  137 (259)
T PF03796_consen   85 SDEEFERLQA-AAEKLSDLP--LYIEDTPSLTIDDIESKIRRLKREGKKVDVVFID  137 (259)
T ss_dssp             HHHHHHHHHH-HHHHHHTSE--EEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred             CHHHHHHHHH-HHHHHhhCc--EEEECCCCCCHHHHHHHHHHHHhhccCCCEEEec
Confidence            2223344433 344566654  8888888888888887776554432444444443

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>TIGR00017 cmk cytidylate kinase

Probab=96.40  E-value=0.003  Score=62.56  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      +++|.|.|.+||||||+|+.|++++    +  ..+++.+++++.
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~----~--~~~~~~g~~~r~   39 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKL----G--YAYLDSGAMYRA   39 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh----C--CceeeCchHHHH
Confidence            4689999999999999999999875    2  245577777653

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.39  E-value=0.044  Score=60.97  Aligned_cols=27  Identities=22%  Similarity=0.253  Sum_probs=23.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      -+.+++++|.||+||||+|+.|++.+.
T Consensus        35 l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963         35 LGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            346789999999999999999998763

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.39  E-value=0.052  Score=55.83  Aligned_cols=42  Identities=17%  Similarity=0.048  Sum_probs=32.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      ....|+|+|.+|+||||+++.|...+... +....+++.|.++
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~-~~~v~~i~~D~~r  115 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSR  115 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence            44689999999999999999998776543 3345567888665

>cd04163 Era Era subfamily

Probab=96.38  E-value=0.051  Score=48.03  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=20.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...|+|.|.+|||||||++.|..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~   25 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVG   25 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            46799999999999999999874

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=96.35  E-value=0.0073  Score=58.50  Aligned_cols=40  Identities=23%  Similarity=0.418  Sum_probs=31.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .++++++|.||+||||+.+...+.++     ...+++++|+....
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~-----~~~ivNyG~~Mle~   43 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELV-----KHKIVNYGDLMLEI   43 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHh-----hceeeeHhHHHHHH
Confidence            57999999999999999999887653     23577888876543

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.30  E-value=0.0053  Score=56.86  Aligned_cols=28  Identities=21%  Similarity=0.239  Sum_probs=24.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      +|.+||..+||||||++.|..++.+.|.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~   29 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRRGY   29 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT-
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHcCC
Confidence            6899999999999999999999877653

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.29  E-value=0.034  Score=61.33  Aligned_cols=39  Identities=10%  Similarity=0.103  Sum_probs=27.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM  220 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~  220 (535)
                      ...+++++|.|||||||||.+++..-..++|..+..++.
T Consensus        20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~   58 (484)
T TIGR02655        20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF   58 (484)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            345999999999999999999865433333444444444

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.27  E-value=0.0063  Score=64.27  Aligned_cols=41  Identities=27%  Similarity=0.412  Sum_probs=33.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ..+.+|.|+|.||||||||+..|...+.+. |..+.|+..|.
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~-g~~v~vi~~Dp   94 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQ-GHKVAVLAVDP   94 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence            467899999999999999999998887765 44566777775

>PRK08181 transposase; Validated

Probab=96.26  E-value=0.011  Score=60.65  Aligned_cols=27  Identities=41%  Similarity=0.615  Sum_probs=23.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      -|+|+|.||+|||+||..|...+.+.|
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~a~~~g  134 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLALIENG  134 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence            589999999999999999988766553

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.26  E-value=0.021  Score=62.87  Aligned_cols=40  Identities=15%  Similarity=0.338  Sum_probs=29.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ...++++.|.||+|||||+.+++.....+| ..+..++.++
T Consensus       262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~g-e~~~y~s~eE  301 (484)
T TIGR02655       262 KDSIILATGATGTGKTLLVSKFLENACANK-ERAILFAYEE  301 (484)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEeeC
Confidence            455999999999999999999887665554 3444555443

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.26  E-value=0.043  Score=59.09  Aligned_cols=23  Identities=35%  Similarity=0.736  Sum_probs=20.3

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      -++|.|.||+||||+|+.|+...
T Consensus        38 ~ilL~GppGtGKTtLA~~ia~~~   60 (413)
T PRK13342         38 SMILWGPPGTGKTTLARIIAGAT   60 (413)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57789999999999999998753

>PRK06921 hypothetical protein; Provisional

Probab=96.25  E-value=0.015  Score=59.43  Aligned_cols=28  Identities=29%  Similarity=0.391  Sum_probs=23.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ..-++|.|.+|+|||+||..|+..+...
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~  144 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRK  144 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence            3468999999999999999998876544

>PRK08006 replicative DNA helicase; Provisional

Probab=96.24  E-value=0.038  Score=61.00  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=61.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...||||.|-||.|||+||-.|+.......|..+.+||...=......++--. .   .+..  ...+        ....
T Consensus       223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~-~---~~v~--~~~i--------~~~~  288 (471)
T PRK08006        223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLAS-L---SRVD--QTRI--------RTGQ  288 (471)
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHH-h---cCCC--HHHh--------hcCC
Confidence            45699999999999999999987664322233444555442211111110000 0   0000  0000        0111


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHH-HHHhhc-CceEEEEE
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFW-ATAKRS-GYEVYILE  316 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~-~LAr~~-G~~V~vIe  316 (535)
                      +....|..+..++...+....  +.|.|....+..+..... .+.+++ ++.+++|+
T Consensus       289 l~~~e~~~~~~a~~~~~~~~~--l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID  343 (471)
T PRK08006        289 LDDEDWARISGTMGILLEKRN--MYIDDSSGLTPTEVRSRARRIFREHGGLSLIMID  343 (471)
T ss_pred             CCHHHHHHHHHHHHHHHhcCC--EEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence            222345555555555555554  788888778876665555 344455 46555543

>TIGR00665 DnaB replicative DNA helicase

Probab=96.24  E-value=0.041  Score=59.33  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=29.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...++||.|.||+|||+||..++.......|..+.++|.+
T Consensus       194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE  233 (434)
T TIGR00665       194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE  233 (434)
T ss_pred             CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence            4569999999999999999998766543334444455554

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.24  E-value=0.019  Score=62.02  Aligned_cols=25  Identities=32%  Similarity=0.562  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .+.-|+|.|.||+|||++|+.++..
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~  202 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHH  202 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            4557888999999999999999865

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.23  E-value=0.01  Score=64.86  Aligned_cols=29  Identities=24%  Similarity=0.340  Sum_probs=24.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      ..++++.|.||+|||||+.+++......+
T Consensus        80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g  108 (446)
T PRK11823         80 GSVVLIGGDPGIGKSTLLLQVAARLAAAG  108 (446)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            45999999999999999999987654433

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.23  E-value=0.0038  Score=56.06  Aligned_cols=22  Identities=41%  Similarity=0.720  Sum_probs=20.7

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |||.|.||+|||+||+.|++.+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999875

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.23  E-value=0.083  Score=59.88  Aligned_cols=64  Identities=17%  Similarity=0.275  Sum_probs=41.3

Q ss_pred             CCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhcC----CCCHHHHHHHhhcc
Q 009432          281 GNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNVH----GFTLDDIERMAGQW  345 (535)
Q Consensus       281 G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNih----~VpeEvIe~M~krf  345 (535)
                      +.+.+||||.. ..+......+++...+..-.++||.++. .+    .+...|-.+    .++.+.|..+..++
T Consensus       117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt-e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i  189 (584)
T PRK14952        117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT-EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARI  189 (584)
T ss_pred             CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC-ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHH
Confidence            44569999964 4556777778888887766777777663 33    234445433    67777776665543

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.22  E-value=0.022  Score=57.18  Aligned_cols=30  Identities=23%  Similarity=0.417  Sum_probs=24.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      +...++++.|.||||||+||.+++......
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~   50 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEGARE   50 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence            344599999999999999999987765554

>PRK13695 putative NTPase; Provisional

Probab=96.21  E-value=0.046  Score=51.42  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=21.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .|+|+|.+|||||||++.|...+..
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~   26 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE   26 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5899999999999999998876654

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.21  E-value=0.021  Score=62.51  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=22.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+.-|+|+|.||+|||++|+.++..+
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el  241 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANET  241 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            44568889999999999999999753

>PRK00023 cmk cytidylate kinase; Provisional

Probab=96.20  E-value=0.0041  Score=61.78  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=31.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      +.+|.+.|.+||||||+|+.|++.+    |  ...++.+++++.
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~----~--~~~~~~~~~~r~   41 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKL----G--FHYLDTGAMYRA   41 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh----C--CCcccCchhHHH
Confidence            5799999999999999999999875    2  245688888765

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=96.18  E-value=0.0095  Score=59.44  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=23.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ....+|+|+|.+|+||||||+++...
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccc
Confidence            45679999999999999999998865

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=96.17  E-value=0.016  Score=59.00  Aligned_cols=37  Identities=27%  Similarity=0.439  Sum_probs=28.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...+++|+|||||||++.-..+.+... |+...|++.|
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~~fls~~-gr~~~vVNLD   39 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMSQFLSAI-GRPVAVVNLD   39 (290)
T ss_pred             cceEEEcCCCCCccchhhhHHHHHHHh-CCceEEEecC
Confidence            356889999999999998888777665 4555677765

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=96.17  E-value=0.03  Score=64.09  Aligned_cols=65  Identities=22%  Similarity=0.347  Sum_probs=40.9

Q ss_pred             HcCCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhh----cCCCCHHHHHHHhhc
Q 009432          279 DEGNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARN----VHGFTLDDIERMAGQ  344 (535)
Q Consensus       279 k~G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RN----ih~VpeEvIe~M~kr  344 (535)
                      ..|.+.++|||.. ..+......+++...+..-.++||.++. +.    .+.+-|-    .+.++.+.|..+..+
T Consensus       116 ~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt-~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~  189 (647)
T PRK07994        116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT-DPQKLPVTILSRCLQFHLKALDVEQIRQQLEH  189 (647)
T ss_pred             hcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC-CccccchHHHhhheEeeCCCCCHHHHHHHHHH
Confidence            3566779999964 4456777888888888766676776653 32    2333343    336777666655543

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=96.15  E-value=0.032  Score=60.63  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      -++|+|.+|+|||+|++.+...+.+.
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~  175 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEK  175 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            47889999999999999999887654

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=96.14  E-value=0.0094  Score=61.84  Aligned_cols=33  Identities=30%  Similarity=0.337  Sum_probs=27.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      +|+++|++|||||+||..|++.+   +   ..|+|.|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~---~---~~iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKL---N---AEIISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhC---C---CcEEEechh
Confidence            58999999999999999999763   2   357898874

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK06526 transposase; Provisional

Probab=96.14  E-value=0.02  Score=58.23  Aligned_cols=28  Identities=25%  Similarity=0.352  Sum_probs=23.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      +.-|+|+|.||+|||+||..|...+...
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~  125 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQA  125 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence            3458999999999999999998766544

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.12  E-value=0.063  Score=61.23  Aligned_cols=26  Identities=27%  Similarity=0.462  Sum_probs=23.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      -+..++++|.+|+||||+|+.|++.+
T Consensus        37 l~ha~Lf~Gp~GvGKTtlAr~lAk~L   62 (618)
T PRK14951         37 LHHAYLFTGTRGVGKTTVSRILAKSL   62 (618)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999999876

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.12  E-value=0.087  Score=52.51  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=26.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...++++.|.||+||||||.+++..+...| ..+..++.+
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e   61 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQ   61 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCC
Confidence            345999999999999999977665554443 333333443

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.12  E-value=0.052  Score=61.05  Aligned_cols=65  Identities=18%  Similarity=0.235  Sum_probs=38.3

Q ss_pred             HcCCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCHH----HHHHhhc----CCCCHHHHHHHhhc
Q 009432          279 DEGNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDPA----GCAARNV----HGFTLDDIERMAGQ  344 (535)
Q Consensus       279 k~G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e----~ci~RNi----h~VpeEvIe~M~kr  344 (535)
                      ..|.+.++|||.. .........+++...+..-.+.+|.++. +..    ....|-.    ..++.+.|.....+
T Consensus       116 ~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt-d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~  189 (546)
T PRK14957        116 SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT-DYHKIPVTILSRCIQLHLKHISQADIKDQLKI  189 (546)
T ss_pred             hcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC-ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHH
Confidence            3455679999974 3445566777888887655565665553 432    2233332    36777766655544

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.11  E-value=0.004  Score=62.57  Aligned_cols=34  Identities=32%  Similarity=0.399  Sum_probs=24.2

Q ss_pred             EEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          188 LRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       188 L~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ++|++||||||+++.+.+.+... +..+.+++.|=
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~-~~~~~~vNLDP   34 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESN-GRDVYIVNLDP   34 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT--S-EEEEE--T
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhc-cCCceEEEcch
Confidence            58999999999999999987544 45667777663

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK04195 replication factor C large subunit; Provisional

Probab=96.11  E-value=0.025  Score=62.17  Aligned_cols=25  Identities=36%  Similarity=0.513  Sum_probs=22.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..++|.|.||+||||+|+.|+..+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            5578999999999999999998763

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.09  E-value=0.034  Score=61.66  Aligned_cols=44  Identities=23%  Similarity=0.249  Sum_probs=33.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHH-cCCCCcEEEeCCceee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVE-NGGDAPRIHSMDDYFM  225 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e-~gG~~~rIlS~DDyfr  225 (535)
                      ...+|+|+|+.|+||||++.+|+.++.. .|+..+.++..|.|+.
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~Ri  299 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRI  299 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccch
Confidence            4579999999999999999999987643 3333455667776554

>PRK05636 replicative DNA helicase; Provisional

Probab=96.09  E-value=0.039  Score=61.44  Aligned_cols=119  Identities=16%  Similarity=0.193  Sum_probs=60.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ....||||.|-||+|||+||-.++.......+..+.+||...-......++-        ... .+-.+ .++.    ..
T Consensus       263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~l--------s~~-s~v~~-~~i~----~g  328 (505)
T PRK05636        263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLL--------SAE-AEVRL-SDMR----GG  328 (505)
T ss_pred             CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHH--------HHh-cCCCH-HHHh----cC
Confidence            3567999999999999999998876543222334445554322111111000        000 00000 0010    11


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHH-HHHHHhhcCceEEEEE
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQ-FWATAKRSGYEVYILE  316 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~-f~~LAr~~G~~V~vIe  316 (535)
                      .+....|..+.+++.+ |.+..  +.|.|..+.+..+.+. ...+.+++|+.+++|+
T Consensus       329 ~l~~~e~~~~~~a~~~-l~~~~--l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvID  382 (505)
T PRK05636        329 KMDEDAWEKLVQRLGK-IAQAP--IFIDDSANLTMMEIRSKARRLKQKHDLKLIVVD  382 (505)
T ss_pred             CCCHHHHHHHHHHHHH-HhcCC--EEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            1222234445444443 55554  8888888888655443 4445666777665554

>PRK08939 primosomal protein DnaI; Reviewed

Probab=96.09  E-value=0.041  Score=57.45  Aligned_cols=40  Identities=20%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      ..-++|.|.+|+|||+||.+|+..+.+. |..+.+++..++
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~v~~~~~~~l  195 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKK-GVSSTLLHFPEF  195 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEEHHHH
Confidence            3468999999999999999999887654 344444444433

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=96.09  E-value=0.088  Score=60.71  Aligned_cols=25  Identities=40%  Similarity=0.590  Sum_probs=22.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..+||+|.+|+||||+|+.|++.+
T Consensus        38 ~Ha~Lf~GP~GvGKTTlAriLAk~L   62 (709)
T PRK08691         38 HHAYLLTGTRGVGKTTIARILAKSL   62 (709)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHh
Confidence            5689999999999999999999875

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=96.08  E-value=0.076  Score=56.83  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      .++|+|.+|+|||+|++.+...+.+.
T Consensus       138 ~l~l~G~~G~GKThL~~ai~~~l~~~  163 (405)
T TIGR00362       138 PLFIYGGVGLGKTHLLHAIGNEILEN  163 (405)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHh
Confidence            47889999999999999998876554

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PTZ00035 Rad51 protein; Provisional

Probab=96.07  E-value=0.025  Score=59.81  Aligned_cols=25  Identities=20%  Similarity=0.049  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.++|.||||||||+..|+-.
T Consensus       117 ~G~iteI~G~~GsGKT~l~~~l~~~  141 (337)
T PTZ00035        117 TGSITELFGEFRTGKTQLCHTLCVT  141 (337)
T ss_pred             CCeEEEEECCCCCchhHHHHHHHHH
Confidence            4569999999999999999988753

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.06  E-value=0.034  Score=54.31  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=23.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ...++++.|.|||||||||.+++......
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~   47 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD   47 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHhc
Confidence            45699999999999999999876543333

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.06  E-value=0.082  Score=59.12  Aligned_cols=64  Identities=23%  Similarity=0.314  Sum_probs=40.2

Q ss_pred             cCCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCH--------HHHHHhhcCCCCHHHHHHHhhc
Q 009432          280 EGNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDP--------AGCAARNVHGFTLDDIERMAGQ  344 (535)
Q Consensus       280 ~G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~--------e~ci~RNih~VpeEvIe~M~kr  344 (535)
                      .|.+.++|||.. ..+......+.+..++..-.+.+|.++. ++        ..|..-+....+.+.|..+..+
T Consensus       117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~-d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~  189 (527)
T PRK14969        117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT-DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQH  189 (527)
T ss_pred             cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC-ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            355679999974 3445566777888877665666666653 32        2355555557777777655443

>PRK08727 hypothetical protein; Validated

Probab=96.04  E-value=0.045  Score=54.48  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=22.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      .|+|+|.+|+|||||++.++..+.+.
T Consensus        43 ~l~l~G~~G~GKThL~~a~~~~~~~~   68 (233)
T PRK08727         43 WLYLSGPAGTGKTHLALALCAAAEQA   68 (233)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            49999999999999999998776554

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=96.03  E-value=0.034  Score=56.15  Aligned_cols=22  Identities=27%  Similarity=0.644  Sum_probs=20.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      -+|+.|+||.||||||+.|+..
T Consensus        52 h~lf~GPPG~GKTTLA~IIA~e   73 (233)
T PF05496_consen   52 HMLFYGPPGLGKTTLARIIANE   73 (233)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCccchhHHHHHHHhc
Confidence            4899999999999999999975

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.03  E-value=0.0086  Score=57.80  Aligned_cols=28  Identities=18%  Similarity=0.145  Sum_probs=24.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      ...+|.++|.+|||||||++.|...+..
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~   32 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALCA   32 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence            4558999999999999999999988754

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=96.02  E-value=0.041  Score=54.79  Aligned_cols=136  Identities=18%  Similarity=0.243  Sum_probs=69.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcc----------ccccccccccCCccCCcchhhhh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEK----------VEDSDVSKSSGSLRSKKPVTKMV  253 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~----------v~~~~~sk~~g~~r~kk~l~kkv  253 (535)
                      .+|-|+|--||||||+++.+..+     |  +.|+..|-+-|..++.          .+.++.....|  .-++   +.+
T Consensus         2 ~iVGLTGgiatGKStVs~~f~~~-----G--~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G--~inR---~~L   69 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFKAL-----G--IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDG--EINR---KVL   69 (225)
T ss_pred             eEEEeecccccChHHHHHHHHHc-----C--CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCC--cccH---HHH
Confidence            47889999999999999999853     3  3466777665543320          00000000000  0011   112


Q ss_pred             hhccCchH---------HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecC-CHH
Q 009432          254 MEYCYEPE---------MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYK-DPA  323 (535)
Q Consensus       254 ~ey~y~~e---------~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~-d~e  323 (535)
                      ....|+..         +....+..|++.+.+++-.|. ..||+|..-+-..   .+..++    ..+.+|.|+-. ..+
T Consensus        70 G~~vF~~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~-r~ivlDiPLLFE~---~~~~~~----~~tvvV~cd~~~Ql~  141 (225)
T KOG3220|consen   70 GKRVFSDPKKRQALNKITHPAIRKEMFKEILKLLLRGY-RVIVLDIPLLFEA---KLLKIC----HKTVVVTCDEELQLE  141 (225)
T ss_pred             hHHHhCCHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC-eEEEEechHHHHH---hHHhhe----eeEEEEEECcHHHHH
Confidence            22333222         122345567777777788886 6899998543322   111111    23445555320 123


Q ss_pred             HHHHhhcCCCCHHHHHHH
Q 009432          324 GCAARNVHGFTLDDIERM  341 (535)
Q Consensus       324 ~ci~RNih~VpeEvIe~M  341 (535)
                      ...+||  ..++++-+.-
T Consensus       142 Rl~~Rd--~lse~dAe~R  157 (225)
T KOG3220|consen  142 RLVERD--ELSEEDAENR  157 (225)
T ss_pred             HHHHhc--cccHHHHHHH
Confidence            455666  6666655544

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.01  E-value=0.052  Score=58.82  Aligned_cols=24  Identities=33%  Similarity=0.682  Sum_probs=21.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      -.=.|+-|+||+||||||+.|+..
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~   71 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGT   71 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHh
Confidence            345789999999999999999975

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.00  E-value=0.029  Score=61.27  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=22.3

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHc
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ++|+|.+|+|||||++.+...+.+.
T Consensus       133 l~lyG~~G~GKTHLl~ai~~~l~~~  157 (440)
T PRK14088        133 LFIYGGVGLGKTHLLQSIGNYVVQN  157 (440)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHHHh
Confidence            8999999999999999998876554

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.96  E-value=0.055  Score=62.91  Aligned_cols=44  Identities=23%  Similarity=0.295  Sum_probs=33.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH-HcCCCCcEEEeCCceee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV-ENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~-e~gG~~~rIlS~DDyfr  225 (535)
                      ...+|+|+|+.|+||||++.+|+..+. ..|+..+.++..|.|+.
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Ri  228 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRI  228 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccch
Confidence            457999999999999999999987664 33334556777777664

>TIGR03689 pup_AAA proteasome ATPase

Probab=95.96  E-value=0.017  Score=64.47  Aligned_cols=26  Identities=35%  Similarity=0.524  Sum_probs=22.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+.-|+|.|+||+|||++|+.++..+
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL  240 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSL  240 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhh
Confidence            34458999999999999999999865

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=95.96  E-value=0.04  Score=57.19  Aligned_cols=26  Identities=38%  Similarity=0.404  Sum_probs=22.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....|+++|.+|||||||++.|...+
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~  168 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEI  168 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccC
Confidence            44589999999999999999998654

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK09087 hypothetical protein; Validated

Probab=95.96  E-value=0.079  Score=52.76  Aligned_cols=22  Identities=36%  Similarity=0.644  Sum_probs=19.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .++|+|.+|||||||++.+++.
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~   67 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREK   67 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4799999999999999998864

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.95  E-value=0.0081  Score=55.54  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=22.5

Q ss_pred             CCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          177 RATRPDHFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       177 r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      +.....+.+|+|+|.+|+|||||.+.+.+.+...
T Consensus        18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            3334566899999999999999999998887665

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=95.95  E-value=0.014  Score=62.47  Aligned_cols=26  Identities=31%  Similarity=0.529  Sum_probs=22.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+.-|+|+|.||+|||++|+.++..+
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~  189 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHET  189 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHh
Confidence            34568999999999999999998753

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=95.95  E-value=0.074  Score=62.53  Aligned_cols=64  Identities=14%  Similarity=0.212  Sum_probs=41.5

Q ss_pred             CCceEEEEeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHH----HHHHhhcC----CCCHHHHHHHhhcc
Q 009432          281 GNFTIVIVDD-RNLRVADFAQFWATAKRSGYEVYILEATYKDPA----GCAARNVH----GFTLDDIERMAGQW  345 (535)
Q Consensus       281 G~f~~VIVDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e----~ci~RNih----~VpeEvIe~M~krf  345 (535)
                      +.+.++|||. -.++......++++.++..-.++||.++. ..+    ++..|-.+    .++.+.|..+..++
T Consensus       119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt-~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~i  191 (824)
T PRK07764        119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT-EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERI  191 (824)
T ss_pred             CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC-ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHH
Confidence            4456999995 45566777788888888777777777653 332    33344433    67777777666554

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.95  E-value=0.081  Score=48.66  Aligned_cols=92  Identities=16%  Similarity=0.175  Sum_probs=52.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...++.+.|..|||||||++.|...+..   ....|.. |...  .                          ..|.+.  
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~-~~~~--~--------------------------i~~~~~--   70 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTW-GSTV--K--------------------------IGYFEQ--   70 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEE-CCeE--E--------------------------EEEEcc--
Confidence            3458999999999999999999854211   1112211 1100  0                          001111  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeC--CCCCHHHHHHHHHHHhhcCc
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDD--RNLRVADFAQFWATAKRSGY  310 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDa--TN~~~~~R~~f~~LAr~~G~  310 (535)
                      ......++ +..++..+.+-  .++|+|-  ..++...+..+.++.++.+.
T Consensus        71 lS~G~~~r-v~laral~~~p--~illlDEP~~~LD~~~~~~l~~~l~~~~~  118 (144)
T cd03221          71 LSGGEKMR-LALAKLLLENP--NLLLLDEPTNHLDLESIEALEEALKEYPG  118 (144)
T ss_pred             CCHHHHHH-HHHHHHHhcCC--CEEEEeCCccCCCHHHHHHHHHHHHHcCC
Confidence            11111111 12233344444  4999996  56678899999998888753

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.94  E-value=0.057  Score=59.62  Aligned_cols=51  Identities=12%  Similarity=0.158  Sum_probs=32.8

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      .|++|..-    -+...++++.|.||||||+||.+++.....+.|..+..++.++
T Consensus        20 LD~~l~GG----~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee   70 (509)
T PRK09302         20 FDDITHGG----LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE   70 (509)
T ss_pred             HHHhhcCC----CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence            45665432    1334599999999999999999986544444233444445443

>PLN02748 tRNA dimethylallyltransferase

Probab=95.92  E-value=0.02  Score=63.21  Aligned_cols=37  Identities=27%  Similarity=0.287  Sum_probs=30.2

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ..++.+|+|+|..|||||+||..|+..+      ...|++.|.
T Consensus        19 ~~~~~~i~i~GptgsGKs~la~~la~~~------~~eii~~Ds   55 (468)
T PLN02748         19 KGKAKVVVVMGPTGSGKSKLAVDLASHF------PVEIINADS   55 (468)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhc------CeeEEcCch
Confidence            3556689999999999999999999874      136888885

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=95.91  E-value=0.053  Score=50.86  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=21.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ....-|+|+|.+|+|||||..+|..
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~   40 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTN   40 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhC
Confidence            3455789999999999999999875

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=95.90  E-value=0.0063  Score=56.44  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=17.7

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |+|+|-+|+|||||++.|++.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999999975

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.90  E-value=0.029  Score=62.93  Aligned_cols=44  Identities=18%  Similarity=0.099  Sum_probs=33.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcC-CCCcEEEeCCceee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENG-GDAPRIHSMDDYFM  225 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g-G~~~rIlS~DDyfr  225 (535)
                      ...+|+|+|..|+||||++.+|...+...+ +..+.+++.|.|+.
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi  393 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV  393 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence            456888999999999999999987665432 34566778887665

>PRK06835 DNA replication protein DnaC; Validated

Probab=95.87  E-value=0.04  Score=58.17  Aligned_cols=40  Identities=15%  Similarity=0.406  Sum_probs=29.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      .-++|.|.+|+|||+||..|+..+...| ..+..++.++++
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g-~~V~y~t~~~l~  223 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRG-KSVIYRTADELI  223 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCC-CeEEEEEHHHHH
Confidence            4589999999999999999998876553 344444444443

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.87  E-value=0.14  Score=55.53  Aligned_cols=47  Identities=26%  Similarity=0.224  Sum_probs=37.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH-HcCCCCcEEEeCCceeeehh
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV-ENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~-e~gG~~~rIlS~DDyfr~~~  228 (535)
                      ++.+|+|+|+.|.||||...+|+.++. ..+...+.+++.|.||.-..
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~  249 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAV  249 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHH
Confidence            377999999999999998777777665 34455677899999987543

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=95.86  E-value=0.015  Score=47.25  Aligned_cols=40  Identities=30%  Similarity=0.538  Sum_probs=30.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +|+++|..|+||||++..|+..+.+.|   .+++..||+....
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g---~~v~~~~d~iivD   40 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRG---KRVLLIDDYVLID   40 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEECCEEEEe
Confidence            478899999999999999999887643   2455666666543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=95.86  E-value=0.081  Score=54.13  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=22.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+.+++++|.||+||||+|+.++..+
T Consensus        42 ~~~~lll~G~~G~GKT~la~~l~~~~   67 (316)
T PHA02544         42 IPNMLLHSPSPGTGKTTVAKALCNEV   67 (316)
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            35688889999999999999998753

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=95.84  E-value=0.097  Score=54.38  Aligned_cols=25  Identities=28%  Similarity=0.195  Sum_probs=22.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.++|.||||||+||-+++..
T Consensus       101 ~g~vtei~G~~GsGKT~l~~~~~~~  125 (317)
T PRK04301        101 TQSITEFYGEFGSGKTQICHQLAVN  125 (317)
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHH
Confidence            4669999999999999999998754

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=95.82  E-value=0.044  Score=51.32  Aligned_cols=25  Identities=36%  Similarity=0.397  Sum_probs=21.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|.|..|||||||.+.|.-.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~   49 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGL   49 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3448999999999999999999854

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=95.82  E-value=0.046  Score=58.10  Aligned_cols=34  Identities=24%  Similarity=0.030  Sum_probs=25.4

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHH
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +|.+|..-    -+...++.|+|.||||||+||-+++-
T Consensus       115 LD~lLgGG----i~~G~ItEI~G~~GsGKTql~lqlav  148 (344)
T PLN03187        115 LDELLGGG----IETRCITEAFGEFRSGKTQLAHTLCV  148 (344)
T ss_pred             HHhhcCCC----CCCCeEEEEecCCCCChhHHHHHHHH
Confidence            45565532    13456999999999999999988863

>PRK09183 transposase/IS protein; Provisional

Probab=95.81  E-value=0.027  Score=57.15  Aligned_cols=29  Identities=31%  Similarity=0.327  Sum_probs=23.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ....|+|.|.||+||||||..|...+...
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~  129 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRA  129 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            34568899999999999999997654443

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=95.81  E-value=0.064  Score=60.12  Aligned_cols=100  Identities=18%  Similarity=0.236  Sum_probs=57.9

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE  259 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~  259 (535)
                      .+.++++.++|+||+|||||.+.|.+++...        ..|++.-....         ..|-.   ++++     ++--
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~--------ti~~i~GPiTv---------vsgK~---RRiT-----flEc  120 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQ--------TIDEIRGPITV---------VSGKT---RRIT-----FLEC  120 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHh--------hhhccCCceEE---------eecce---eEEE-----EEeC
Confidence            4678999999999999999999999886432        22333211100         00000   0110     1101


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE
Q 009432          260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV  312 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V  312 (535)
                      +..    ...|+..++  +.+=.  +.+||+.|.-..+--+|+.++..+|.+-
T Consensus       121 p~D----l~~miDvaK--IaDLV--lLlIdgnfGfEMETmEFLnil~~HGmPr  165 (1077)
T COG5192         121 PSD----LHQMIDVAK--IADLV--LLLIDGNFGFEMETMEFLNILISHGMPR  165 (1077)
T ss_pred             hHH----HHHHHhHHH--hhhee--EEEeccccCceehHHHHHHHHhhcCCCc
Confidence            111    112333222  22223  6788998888877788999999999864

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=95.78  E-value=0.12  Score=54.62  Aligned_cols=27  Identities=30%  Similarity=0.271  Sum_probs=23.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ..-+|+++|.+||||||+.+.|...+.
T Consensus       121 ~~g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       121 PRGLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            356899999999999999999887653

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=95.78  E-value=0.014  Score=60.27  Aligned_cols=42  Identities=21%  Similarity=0.253  Sum_probs=32.8

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      ....+|+|+|.||||||||+..|...+...| ..+.++..|..
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~-~~v~~i~~D~~   73 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMELRRRG-LKVAVIAVDPS   73 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence            4567888889999999999999998876653 45567777743

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=95.78  E-value=0.0079  Score=65.81  Aligned_cols=29  Identities=34%  Similarity=0.607  Sum_probs=25.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      ..=|++.|.||+||||||++|++.+..+|
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy~~~G  291 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFYASQG  291 (604)
T ss_pred             hcceEEecCCCCChhHHHHHHHHHHHhcC
Confidence            34588899999999999999999987765

>TIGR00436 era GTP-binding protein Era

Probab=95.77  E-value=0.11  Score=52.52  Aligned_cols=49  Identities=10%  Similarity=0.127  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          270 MLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       270 llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      +.+.+..+++.-..-++|+|++...... ..+.+..+..+.++.+|.=.+
T Consensus        69 ~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~  117 (270)
T TIGR00436        69 MMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKL  117 (270)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECe
Confidence            4444455554433237799998766544 455666677777776554443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF13245 AAA_19: Part of AAA domain

Probab=95.76  E-value=0.01  Score=49.64  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=17.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ++++.|.|||||||++..+...+.
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            788899999999966555444443

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=95.76  E-value=0.1  Score=54.68  Aligned_cols=34  Identities=15%  Similarity=-0.037  Sum_probs=25.4

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHH
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +|.+|..- -   +...++.++|.||||||+||-+++-
T Consensus        85 LD~lLgGG-i---~~G~iteI~G~~GsGKTql~lqla~  118 (313)
T TIGR02238        85 LDGILGGG-I---ESMSITEVFGEFRCGKTQLSHTLCV  118 (313)
T ss_pred             HHHHhCCC-C---cCCeEEEEECCCCCCcCHHHHHHHH
Confidence            45665532 1   3456999999999999999988763

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.75  E-value=0.0093  Score=57.49  Aligned_cols=29  Identities=28%  Similarity=0.500  Sum_probs=25.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      .+=|.++|.||+||||++++|++.+.+.|
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g   33 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKG   33 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence            45689999999999999999999987763

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=95.75  E-value=0.058  Score=50.64  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=22.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.++|..|||||||++.|.-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34489999999999999999998653

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=95.74  E-value=0.032  Score=56.62  Aligned_cols=39  Identities=21%  Similarity=0.271  Sum_probs=28.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...=+++.|.||+|||+||.+|...+.. .|..+.++..-
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~  142 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFITAP  142 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence            4456899999999999999999988763 34444343333

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=95.73  E-value=0.061  Score=47.79  Aligned_cols=19  Identities=32%  Similarity=0.436  Sum_probs=18.2

Q ss_pred             EEEEccCCChHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~  204 (535)
                      |+|+|.+|+|||||.+.|.
T Consensus         2 i~l~G~~g~GKTtL~~~l~   20 (170)
T cd01876           2 IAFAGRSNVGKSSLINALT   20 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHh
Confidence            7899999999999999998

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.72  E-value=0.0092  Score=68.31  Aligned_cols=44  Identities=25%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             CCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ..||.+.|.+|||+||-||||||.-+++.    .|-.+.-++..|-+.
T Consensus       321 s~RP~kKilLL~GppGlGKTTLAHViAkq----aGYsVvEINASDeRt  364 (877)
T KOG1969|consen  321 SKRPPKKILLLCGPPGLGKTTLAHVIAKQ----AGYSVVEINASDERT  364 (877)
T ss_pred             cCCCccceEEeecCCCCChhHHHHHHHHh----cCceEEEeccccccc
Confidence            34789999999999999999999999975    254444445555544

>PRK13768 GTPase; Provisional

Probab=95.69  E-value=0.016  Score=58.50  Aligned_cols=38  Identities=32%  Similarity=0.488  Sum_probs=30.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ..+|++.|.+||||||++..++..+... |..+.++..|
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~-g~~v~~i~~D   39 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQ-GYDVAIVNLD   39 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhc-CCceEEEECC
Confidence            3589999999999999999999887665 4455566655

>PRK00089 era GTPase Era; Reviewed

Probab=95.67  E-value=0.16  Score=51.65  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      +.-+|+++|.||||||||.+.|.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~   26 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALV   26 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999999987

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=95.66  E-value=0.065  Score=57.70  Aligned_cols=40  Identities=18%  Similarity=0.221  Sum_probs=28.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...|||+.|.||+|||+||-.++.......|..+.++|.+
T Consensus       193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE  232 (421)
T TIGR03600       193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE  232 (421)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            3559999999999999999999865542223444556644

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=95.66  E-value=0.077  Score=51.07  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=21.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||.+.|.-.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            3458999999999999999999854

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.018  Score=60.40  Aligned_cols=23  Identities=48%  Similarity=0.756  Sum_probs=20.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .-|+|.|+||.|||+||++++..
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATE  189 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATE  189 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhh
Confidence            56999999999999999999854

>cd01895 EngA2 EngA2 subfamily

Probab=95.63  E-value=0.13  Score=46.13  Aligned_cols=35  Identities=9%  Similarity=0.127  Sum_probs=25.1

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      ++|+|+.+........++..+...+.++.++.-.+
T Consensus        89 i~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~  123 (174)
T cd01895          89 LLVIDATEGITEQDLRIAGLILEEGKALVIVVNKW  123 (174)
T ss_pred             EEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEecc
Confidence            78999877665555667777777788776665544

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=95.63  E-value=0.06  Score=62.84  Aligned_cols=31  Identities=26%  Similarity=0.220  Sum_probs=23.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      ...++.|+|.|||||||||-.++......|+
T Consensus        59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~   89 (790)
T PRK09519         59 RGRVIEIYGPESSGKTTVALHAVANAQAAGG   89 (790)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            4569999999999999999886654444443

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=95.58  E-value=0.064  Score=56.18  Aligned_cols=35  Identities=17%  Similarity=0.030  Sum_probs=26.0

Q ss_pred             chhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHH
Q 009432          167 NALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       167 ~~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+|.+|..-    -+...+++++|.||+||||||..++.
T Consensus        84 ~lD~ll~gG----i~~g~i~~i~G~~g~GKT~l~~~~~~  118 (316)
T TIGR02239        84 ELDKLLGGG----IETGSITEIFGEFRTGKTQLCHTLAV  118 (316)
T ss_pred             HHHHHhcCC----CCCCeEEEEECCCCCCcCHHHHHHHH
Confidence            355555432    13366999999999999999998875

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.58  E-value=0.13  Score=56.96  Aligned_cols=25  Identities=32%  Similarity=0.499  Sum_probs=22.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..+|++|.||+||||+|+.+++.+
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l   60 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSL   60 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468999999999999999998865

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.57  E-value=0.16  Score=51.76  Aligned_cols=26  Identities=27%  Similarity=0.213  Sum_probs=22.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..-+|+++|.+||||||+.+.+...+
T Consensus        79 ~~GlilisG~tGSGKTT~l~all~~i  104 (264)
T cd01129          79 PHGIILVTGPTGSGKTTTLYSALSEL  104 (264)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhhh
Confidence            44589999999999999999987664

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.57  E-value=0.011  Score=54.88  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=22.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+|+|.|..|||||||+|.+++.+
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            4489999999999999999999875

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=95.55  E-value=0.02  Score=60.36  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +.-|+|+|.||+|||++|+.++..
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~  179 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHE  179 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            445889999999999999999875

Many proteins may score above the trusted cutoff because an internal

>CHL00195 ycf46 Ycf46; Provisional

Probab=95.55  E-value=0.032  Score=61.85  Aligned_cols=27  Identities=33%  Similarity=0.508  Sum_probs=23.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+.-|+|.|+||+|||++|+.|+..+
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~  283 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDW  283 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence            445678999999999999999999753

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.55  E-value=0.11  Score=56.77  Aligned_cols=46  Identities=24%  Similarity=0.265  Sum_probs=33.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHH-cCCCCcEEEeCCceeee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVE-NGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e-~gG~~~rIlS~DDyfr~  226 (535)
                      ....+|.|+|+.|+||||++++|+.++.. .++....++..|.|+..
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig  235 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG  235 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh
Confidence            34579999999999999999999865432 23344556677776654

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=95.55  E-value=0.026  Score=60.98  Aligned_cols=28  Identities=21%  Similarity=0.125  Sum_probs=24.2

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.....|+|+|.+|||||||+++|++.+
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~  243 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIF  243 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4456789999999999999999999764

>PLN03025 replication factor C subunit; Provisional

Probab=95.54  E-value=0.076  Score=55.08  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +++.|.||+||||+|+.+++.+
T Consensus        37 lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         37 LILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999865

>PRK08760 replicative DNA helicase; Provisional

Probab=95.51  E-value=0.11  Score=57.54  Aligned_cols=42  Identities=21%  Similarity=0.226  Sum_probs=30.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ....||||.|-||.|||+||-.|+.......|..+.+||.+.
T Consensus       227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM  268 (476)
T PRK08760        227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM  268 (476)
T ss_pred             CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC
Confidence            345699999999999999999998765333244455666543

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=95.50  E-value=0.013  Score=55.07  Aligned_cols=27  Identities=22%  Similarity=0.282  Sum_probs=23.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      +|.++|.+|||||||+.+|...+.+.|
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G   27 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARG   27 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            578999999999999999998876553

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=95.49  E-value=0.016  Score=53.93  Aligned_cols=36  Identities=28%  Similarity=0.424  Sum_probs=27.9

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      +|.++|.+||||||+++.|...+.+.+. ...++..|
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~-~v~ii~~D   36 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGK-RVAVLAID   36 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEeC
Confidence            3788999999999999999988877654 33454545

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.46  E-value=0.13  Score=54.15  Aligned_cols=140  Identities=20%  Similarity=0.129  Sum_probs=76.7

Q ss_pred             chhhhhcCCC--CCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCcc
Q 009432          167 NALHLLKQPH--RATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLR  244 (535)
Q Consensus       167 ~~~~ll~~p~--r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r  244 (535)
                      ..+.|..++-  .+.....=||+++|+.||||||....+.++++++  ...+|+...|=+.-.               +.
T Consensus       107 ~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~--~~~HIlTIEDPIE~v---------------h~  169 (353)
T COG2805         107 TLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKH--KAKHILTIEDPIEYV---------------HE  169 (353)
T ss_pred             CHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhcc--CCcceEEecCchHhh---------------hc
Confidence            3445555552  2445566799999999999999888888887654  234566655432211               11


Q ss_pred             CCcchhhhhhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHH
Q 009432          245 SKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAG  324 (535)
Q Consensus       245 ~kk~l~kkv~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~  324 (535)
                      .++.+.++ .|       .+.-......+++.+|++.-  -||+=+---+.+..+--+..|.. |-. ++-.+++.+...
T Consensus       170 skkslI~Q-RE-------vG~dT~sF~~aLraALReDP--DVIlvGEmRD~ETi~~ALtAAET-GHL-V~~TLHT~sA~~  237 (353)
T COG2805         170 SKKSLINQ-RE-------VGRDTLSFANALRAALREDP--DVILVGEMRDLETIRLALTAAET-GHL-VFGTLHTNSAAK  237 (353)
T ss_pred             chHhhhhH-HH-------hcccHHHHHHHHHHHhhcCC--CEEEEeccccHHHHHHHHHHHhc-CCE-EEEecccccHHH
Confidence            22222221 01       11112234456777888874  56655655566666555545544 432 244444445555


Q ss_pred             HHHhhcCCCCH
Q 009432          325 CAARNVHGFTL  335 (535)
Q Consensus       325 ci~RNih~Vpe  335 (535)
                      .+.|-+.-++.
T Consensus       238 ti~RiidvFp~  248 (353)
T COG2805         238 TIDRIIDVFPA  248 (353)
T ss_pred             HHHHHHHhCCh
Confidence            56666654443

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.46  E-value=0.014  Score=55.63  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=21.3

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHc
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      |+|+|.||+||||+.+++.+.+...
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~~   26 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKKK   26 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhcc
Confidence            7899999999999999999887643

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK05748 replicative DNA helicase; Provisional

Probab=95.41  E-value=0.12  Score=56.43  Aligned_cols=40  Identities=20%  Similarity=0.209  Sum_probs=28.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...+||+.|.||.|||+||-.++.......|..+.+||..
T Consensus       202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE  241 (448)
T PRK05748        202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE  241 (448)
T ss_pred             CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4459999999999999999998866443324444455544

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=95.39  E-value=0.023  Score=54.06  Aligned_cols=21  Identities=38%  Similarity=0.619  Sum_probs=19.7

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ++|+.|+.|||||||.+.+.+
T Consensus         2 v~ii~GfLGsGKTTli~~ll~   22 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLK   22 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999986

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=95.36  E-value=0.21  Score=55.87  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=22.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..+|++|.+|+||||+|+.|++.+
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~L   67 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAV   67 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999999876

>PRK08840 replicative DNA helicase; Provisional

Probab=95.36  E-value=0.13  Score=56.74  Aligned_cols=40  Identities=23%  Similarity=0.225  Sum_probs=28.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...|||+.|-||.|||+||-.|+.......+..+.+||..
T Consensus       216 ~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE  255 (464)
T PRK08840        216 GSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE  255 (464)
T ss_pred             CCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            4569999999999999999887765432223344455544

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.35  E-value=0.012  Score=59.15  Aligned_cols=27  Identities=33%  Similarity=0.500  Sum_probs=23.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+..+++++|++|||||||.|.|...+
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence            455699999999999999999997654

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.35  E-value=0.022  Score=53.86  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..-|+|+|.+|+||||+|..|.++
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            357999999999999999988864

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=95.35  E-value=0.021  Score=59.21  Aligned_cols=45  Identities=20%  Similarity=0.288  Sum_probs=35.4

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ...+++||++|.-|||||||.++|...+.... ..+.|++.|--.+
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~-~ppYviNLDPAv~   60 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKK-TPPYVINLDPAVR   60 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhcc-CCCeEEeCCHHHh
Confidence            45788999999999999999999988776543 3467778776544

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=95.34  E-value=0.02  Score=60.52  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=21.3

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      -|+|.|.||+||||+|+.|++.+
T Consensus        66 ~ilL~G~pGtGKTtla~~lA~~l   88 (327)
T TIGR01650        66 RVMVQGYHGTGKSTHIEQIAARL   88 (327)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHH
Confidence            38899999999999999999876

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=95.31  E-value=0.029  Score=58.01  Aligned_cols=47  Identities=23%  Similarity=0.301  Sum_probs=35.9

Q ss_pred             CCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCC-cEEEeCCcee
Q 009432          178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDA-PRIHSMDDYF  224 (535)
Q Consensus       178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~-~rIlS~DDyf  224 (535)
                      .....+++|-++|.||+||||+|+.|...+..++... +.++.+|-+-
T Consensus        77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh  124 (283)
T COG1072          77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH  124 (283)
T ss_pred             CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccc
Confidence            4467899999999999999999999998876654332 4455666443

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=95.31  E-value=0.051  Score=59.74  Aligned_cols=14  Identities=36%  Similarity=0.389  Sum_probs=8.3

Q ss_pred             ccCCCCCCCCCCCCC
Q 009432           23 DHGGNGAGNAPFHNT   37 (535)
Q Consensus        23 ~hg~~~~~~~~~~~~   37 (535)
                      +||+++. +.|+|++
T Consensus       253 ~~gf~~~-~~p~~~d  266 (569)
T KOG3671|consen  253 QVGFDSA-PAPNNND  266 (569)
T ss_pred             CCCcccC-CCCCCCC
Confidence            4566553 3567777

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.30  E-value=0.23  Score=56.77  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=22.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-.+|+.|.+|+||||+|+.|++.+
T Consensus        38 ~ha~Lf~GPpG~GKTtiArilAk~L   62 (624)
T PRK14959         38 APAYLFSGTRGVGKTTIARIFAKAL   62 (624)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhc
Confidence            3579999999999999999999875

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=95.30  E-value=0.017  Score=61.46  Aligned_cols=29  Identities=31%  Similarity=0.362  Sum_probs=25.8

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      +.+.+|.++|++|||||||+.+|...+..
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~   31 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLSE   31 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence            46789999999999999999999988753

>cd01882 BMS1 Bms1

Probab=95.28  E-value=0.13  Score=50.89  Aligned_cols=26  Identities=31%  Similarity=0.516  Sum_probs=22.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..+.+|+++|++|+|||||++.|...
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~   62 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKN   62 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            45678999999999999999988764

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.28  E-value=0.015  Score=50.88  Aligned_cols=24  Identities=42%  Similarity=0.508  Sum_probs=21.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      |+|.|.||.|||+||+.|++.+.+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~   24 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLK   24 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999887653

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.25  E-value=0.12  Score=57.38  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=22.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..++++|.+|+||||+|+.|++.+
T Consensus        35 ~ha~Lf~Gp~G~GKTT~ArilAk~L   59 (491)
T PRK14964         35 PQSILLVGASGVGKTTCARIISLCL   59 (491)
T ss_pred             CceEEEECCCCccHHHHHHHHHHHH
Confidence            4579999999999999999999865

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=95.24  E-value=0.024  Score=53.71  Aligned_cols=27  Identities=26%  Similarity=0.238  Sum_probs=23.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      .+|.++|.+|||||||+++|...+...
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~   28 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSAR   28 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            479999999999999999999887554

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK07004 replicative DNA helicase; Provisional

Probab=95.22  E-value=0.12  Score=56.88  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=28.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...|||+.|-||+|||+||..++.......|..+.+||..
T Consensus       212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE  251 (460)
T PRK07004        212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME  251 (460)
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            4558999999999999999998765432224444455543

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=95.21  E-value=0.023  Score=54.91  Aligned_cols=28  Identities=29%  Similarity=0.258  Sum_probs=23.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      ....|+|+|.+|+||||+|+.+.....+
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~   64 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEE   64 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3558999999999999999999877543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=95.21  E-value=0.027  Score=60.03  Aligned_cols=27  Identities=22%  Similarity=0.267  Sum_probs=23.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ..-+|+++|..||||||+.+.|...+.
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456999999999999999999988764

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=0.041  Score=63.12  Aligned_cols=26  Identities=42%  Similarity=0.538  Sum_probs=23.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+.-|+|.|.+|||||+|+++|.+++
T Consensus       430 ~~~~Ill~G~~GsGKT~L~kal~~~~  455 (952)
T KOG0735|consen  430 RHGNILLNGPKGSGKTNLVKALFDYY  455 (952)
T ss_pred             ccccEEEeCCCCCCHhHHHHHHHHHh
Confidence            45568999999999999999999874

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.13  E-value=0.069  Score=58.97  Aligned_cols=38  Identities=18%  Similarity=0.416  Sum_probs=27.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ..++++.|.||+|||+||.+++.....+| ..+..++.+
T Consensus       273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g-~~~~yis~e  310 (509)
T PRK09302        273 GSIILVSGATGTGKTLLASKFAEAACRRG-ERCLLFAFE  310 (509)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhCC-CcEEEEEec
Confidence            44888899999999999999876544443 444555543

>PRK05595 replicative DNA helicase; Provisional

Probab=95.12  E-value=0.24  Score=54.07  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=28.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...+||+.|-||+|||+||-.++.......|..+.++|..
T Consensus       200 ~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE  239 (444)
T PRK05595        200 KGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE  239 (444)
T ss_pred             CCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC
Confidence            3469999999999999999999865332223344455544

>PRK06321 replicative DNA helicase; Provisional

Probab=95.10  E-value=0.16  Score=56.13  Aligned_cols=40  Identities=20%  Similarity=0.160  Sum_probs=28.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...||||.|-||.|||+||-.|+.......|..+.+||..
T Consensus       225 ~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLE  264 (472)
T PRK06321        225 PSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLE  264 (472)
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            3459999999999999999998876432223444555544

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=95.10  E-value=0.015  Score=58.50  Aligned_cols=37  Identities=19%  Similarity=0.213  Sum_probs=26.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ++|.++|.|||||||+|+.+.+.    | . +..+++.|.++.
T Consensus         1 miI~i~G~~gsGKstva~~~~~~----g-~-~~~~~~~d~ik~   37 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN----Y-N-AVKYQLADPIKE   37 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc----C-C-cEEEehhHHHHH
Confidence            48999999999999999999753    2 2 232566555543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=95.09  E-value=0.022  Score=65.57  Aligned_cols=37  Identities=19%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .+|.|.|.|||||||+|+.|++++    | + ..++.+.+++.
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l----~-~-~~~~~g~~~r~   38 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYL----G-Y-AYLDTGAMYRA   38 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh----C-C-cEeecCcEeHH
Confidence            378999999999999999999886    2 2 45577777765

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=95.06  E-value=0.014  Score=58.45  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=25.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      +.+++++|.||+||||+|+.|..        .+.+++.|.
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~--------~~~~~~~d~   43 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG--------KTLVLSFDM   43 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC--------CCEEEeccc
Confidence            46799999999999999999852        235666665

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=95.04  E-value=0.037  Score=49.71  Aligned_cols=36  Identities=31%  Similarity=0.386  Sum_probs=28.4

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      |++.|.+|+||||++..|+..+.+.+ ..+.++..|-
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g-~~V~~id~D~   37 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKG-KPVLAIDADP   37 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCc
Confidence            78999999999999999998887653 3445566653

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=95.03  E-value=0.03  Score=61.66  Aligned_cols=24  Identities=33%  Similarity=0.577  Sum_probs=21.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +.-|+|.|+||+|||++|+.|+..
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~  111 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGE  111 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            345889999999999999999865

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=95.03  E-value=0.17  Score=57.52  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=22.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..+||+|.+|+||||+|+.|++.+
T Consensus        46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L   70 (598)
T PRK09111         46 AQAFMLTGVRGVGKTTTARILARAL   70 (598)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999999876

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=95.02  E-value=0.02  Score=49.40  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=19.1

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |+++|.+|||||||.+.|...
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            789999999999999999853

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.01  E-value=0.021  Score=51.11  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ..+++|.|.+|||||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4689999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=94.99  E-value=0.027  Score=55.05  Aligned_cols=27  Identities=26%  Similarity=0.202  Sum_probs=22.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ..++|+|.+|+||||||+.+.......
T Consensus        43 ~~~~l~G~~G~GKT~La~ai~~~~~~~   69 (227)
T PRK08903         43 RFFYLWGEAGSGRSHLLQALVADASYG   69 (227)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            478999999999999999998765443

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=94.97  E-value=0.019  Score=55.18  Aligned_cols=43  Identities=23%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ...-++|.|.+|+|||+||..|...+... |..+..+...+++.
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~~~~~L~~   88 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFITASDLLD   88 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEeecCceec
Confidence            34569999999999999999998877765 44555555555443

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=94.97  E-value=0.045  Score=59.51  Aligned_cols=24  Identities=38%  Similarity=0.542  Sum_probs=21.3

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-|+|.|.||+|||++|+.|++.+
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l  132 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARIL  132 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHh
Confidence            458899999999999999999764

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=94.95  E-value=0.097  Score=51.80  Aligned_cols=37  Identities=16%  Similarity=0.333  Sum_probs=26.6

Q ss_pred             hhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          170 HLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       170 ~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      .+...++..  ..  .+.|.|.+|+|||+|.+++...+.+.
T Consensus        25 ~ia~~~~~~--~~--~l~l~G~~G~GKTHLL~Ai~~~~~~~   61 (219)
T PF00308_consen   25 AIAENPGER--YN--PLFLYGPSGLGKTHLLQAIANEAQKQ   61 (219)
T ss_dssp             HHHHSTTTS--SS--EEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCC--CC--ceEEECCCCCCHHHHHHHHHHHHHhc
Confidence            455555541  12  25789999999999999998876553

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=94.92  E-value=0.081  Score=55.68  Aligned_cols=25  Identities=24%  Similarity=0.285  Sum_probs=22.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-..++.|+||+|||+.|+.+++.+
T Consensus        57 lp~~LFyGPpGTGKTStalafar~L   81 (346)
T KOG0989|consen   57 LPHYLFYGPPGTGKTSTALAFARAL   81 (346)
T ss_pred             CceEEeeCCCCCcHhHHHHHHHHHh
Confidence            3478899999999999999999876

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=94.91  E-value=0.018  Score=51.25  Aligned_cols=23  Identities=39%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .+++|+|..|||||||.+.|...
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CEEEEEccCCCccccceeeeccc
Confidence            48999999999999999999854

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=94.87  E-value=0.26  Score=52.29  Aligned_cols=149  Identities=16%  Similarity=0.197  Sum_probs=78.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      +-.||++.|..|||||-||-.|+.++   +   ..|++.|-+-.-....+-.+..+     ...+..+.+.++.... ++
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf---~---~EIINsDkmQvYkGldivTnK~t-----~~e~~gVPHHLlg~l~-~~   73 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRF---P---GEIINSDKMQVYKGLDIVTNKIT-----LQERKGVPHHLLGHLH-PE   73 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhC---C---ceeecccceeeecCcccccccCC-----hhhcCCCChHHhCcCC-hH
Confidence            56799999999999999999999875   2   36777775533221111000000     0001122233332211 11


Q ss_pred             H---HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHH---------------HHhhcCceEEEEEEecCCHH
Q 009432          262 M---EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWA---------------TAKRSGYEVYILEATYKDPA  323 (535)
Q Consensus       262 ~---ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~---------------LAr~~G~~V~vIe~~~~d~e  323 (535)
                      .   ...++.....++++.+..|+ ..||+=++|+.....  +.+               +..++-|.++++++.+ +..
T Consensus        74 ~e~t~~~F~~~a~~aie~I~~rgk-~PIv~GGs~~yi~al--~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda-~~~  149 (348)
T KOG1384|consen   74 AEYTAGEFEDDASRAIEEIHSRGK-LPIVVGGSNSYLQAL--LSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDA-DQA  149 (348)
T ss_pred             hhccHHHHHHHHHHHHHHHHhCCC-CCEEeCCchhhHHHH--hhcCCCcccCcccccCCCCCcccccceEEEEEec-chH
Confidence            1   12344455556677778887 346666788764332  111               0112337888999987 555


Q ss_pred             HHHHhhcC-------CCCHHHHHHHhhccc
Q 009432          324 GCAARNVH-------GFTLDDIERMAGQWE  346 (535)
Q Consensus       324 ~ci~RNih-------~VpeEvIe~M~krfE  346 (535)
                      ++..|--.       .-=.|.|..|+..+.
T Consensus       150 VL~~~l~~RVD~Ml~~Gl~eE~~~f~~~~~  179 (348)
T KOG1384|consen  150 VLFERLDKRVDDMLESGLLEELRDFYDPYN  179 (348)
T ss_pred             HHHHHHHHHHHHHHHcchHHHHHHHhhhhh
Confidence            55444332       222345556655544

>COG3911 Predicted ATPase [General function prediction only]

Probab=94.85  E-value=0.025  Score=54.10  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=21.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++||.|.||+|||||.+.|+++
T Consensus         9 ~~~fIltGgpGaGKTtLL~aLa~~   32 (183)
T COG3911           9 HKRFILTGGPGAGKTTLLAALARA   32 (183)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHHc
Confidence            368999999999999999999875

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=94.84  E-value=0.094  Score=55.20  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=22.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.+||+.|-||||||.||-.|+..+
T Consensus         1 K~v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    1 KQVILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             CeEEEEEecCCcCHHHHHHHHHHHh
Confidence            4689999999999999999998876

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=94.84  E-value=0.022  Score=49.50  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=18.8

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      =|+|+|.+|||||||...|..
T Consensus         3 ki~~~G~~~~GKstl~~~l~~   23 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLG   23 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=94.83  E-value=0.32  Score=47.29  Aligned_cols=27  Identities=22%  Similarity=0.183  Sum_probs=23.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ...+|+++|++|+||-||....+..+.
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~   30 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLA   30 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhc
Confidence            356999999999999999998887763

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.83  E-value=0.23  Score=56.14  Aligned_cols=26  Identities=27%  Similarity=0.393  Sum_probs=23.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      -+..+|++|.+|+||||+|+.|++.+
T Consensus        37 ~~hayLf~Gp~G~GKtt~A~~lak~l   62 (576)
T PRK14965         37 VAHAFLFTGARGVGKTSTARILAKAL   62 (576)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            35678999999999999999999875

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=94.83  E-value=0.052  Score=62.72  Aligned_cols=24  Identities=33%  Similarity=0.559  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +.-|+|.|.||+|||++|+.|+..
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e  510 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATE  510 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            445888999999999999999965

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=94.82  E-value=0.038  Score=56.81  Aligned_cols=39  Identities=28%  Similarity=0.367  Sum_probs=28.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      +..+|-++|.||+|||||...|...+.+.| ..+-|+..|
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g-~~VaVlAVD   66 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERG-KRVAVLAVD   66 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcC-CceEEEEEC
Confidence            356999999999999999999998888764 455565544

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=94.81  E-value=0.11  Score=60.02  Aligned_cols=27  Identities=30%  Similarity=0.527  Sum_probs=22.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+.-|+|+|.||+||||||+.|+..+
T Consensus       210 ~~~~giLL~GppGtGKT~laraia~~~  236 (733)
T TIGR01243       210 EPPKGVLLYGPPGTGKTLLAKAVANEA  236 (733)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHh
Confidence            344568899999999999999998753

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK08506 replicative DNA helicase; Provisional

Probab=94.80  E-value=0.2  Score=55.23  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=29.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...||||.|-||.|||+||-.++...... |..+.+||..
T Consensus       191 ~G~LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlE  229 (472)
T PRK08506        191 KGDLIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLE  229 (472)
T ss_pred             CCceEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCc
Confidence            44599999999999999999988765433 4445566654

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=94.79  E-value=0.1  Score=55.40  Aligned_cols=34  Identities=15%  Similarity=0.031  Sum_probs=25.3

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHH
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +|.+|..-    -+...+++++|.||+|||+||-.|+.
T Consensus       112 LD~lL~GG----~~~g~i~~i~G~~g~GKT~l~~~l~~  145 (342)
T PLN03186        112 LDKILEGG----IETGSITEIYGEFRTGKTQLCHTLCV  145 (342)
T ss_pred             HHHhhcCC----CcCceEEEEECCCCCCccHHHHHHHH
Confidence            45555432    13356999999999999999988774

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.79  E-value=0.023  Score=54.33  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=22.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+|+++|.+||||||+++.|...+
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4489999999999999999998764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=94.77  E-value=0.21  Score=56.93  Aligned_cols=25  Identities=36%  Similarity=0.465  Sum_probs=22.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..+|+.|.+|+||||+|+.+++.+
T Consensus        38 ~hA~Lf~GP~GvGKTTlA~~lAk~L   62 (605)
T PRK05896         38 THAYIFSGPRGIGKTSIAKIFAKAI   62 (605)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999999876

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=94.75  E-value=0.023  Score=66.86  Aligned_cols=39  Identities=26%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .++|.+.|+|||||||+|+.|++.+    +  ...++.+.++|..
T Consensus        34 ~~~i~idG~~gsGKst~~~~la~~l----~--~~~~~~g~~yRa~   72 (863)
T PRK12269         34 TVIIALDGPAGSGKSSVCRLLASRL----G--AQCLNTGSFYRAF   72 (863)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh----C--CcEEeHHHHHHHH
Confidence            3799999999999999999999886    2  2466888887764

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=94.72  E-value=0.037  Score=56.01  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.1

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      -|+|.|.||+|||++|+.|+..+
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~l   45 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKR   45 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHh
Confidence            46689999999999999999753

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR00101 ureG urease accessory protein UreG

Probab=94.69  E-value=0.03  Score=54.66  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=22.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++.|.|+|.+|||||||.+.+...+
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l   25 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRAL   25 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=94.69  E-value=0.025  Score=49.17  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=18.6

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |++.|.+|+|||||.+.|..
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999984

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=94.67  E-value=0.55  Score=52.89  Aligned_cols=63  Identities=25%  Similarity=0.305  Sum_probs=38.4

Q ss_pred             CCceEEEEeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhcC----CCCHHHHHHHhhc
Q 009432          281 GNFTIVIVDD-RNLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNVH----GFTLDDIERMAGQ  344 (535)
Q Consensus       281 G~f~~VIVDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNih----~VpeEvIe~M~kr  344 (535)
                      |.+.+||||. -..+......+++...+..-.++||.+.. ++    .....|-.+    .++.+.|.....+
T Consensus       116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt-d~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~  187 (535)
T PRK08451        116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT-DPLKLPATILSRTQHFRFKQIPQNSIISHLKT  187 (535)
T ss_pred             CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC-ChhhCchHHHhhceeEEcCCCCHHHHHHHHHH
Confidence            4456999996 44556667778888877655566666553 43    234445433    6666666665543

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=94.67  E-value=0.025  Score=57.51  Aligned_cols=23  Identities=30%  Similarity=0.590  Sum_probs=20.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .++|+|+||+||||||+.++..+
T Consensus        32 ~~ll~Gp~G~GKT~la~~ia~~~   54 (305)
T TIGR00635        32 HLLLYGPPGLGKTTLAHIIANEM   54 (305)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=0.055  Score=60.52  Aligned_cols=36  Identities=33%  Similarity=0.599  Sum_probs=30.2

Q ss_pred             hhhcCCCCCCC---CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          170 HLLKQPHRATR---PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       170 ~ll~~p~r~~r---~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ++|+.|.++++   .-|.=|+|+|+||.|||-|||+++-
T Consensus       321 efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG  359 (752)
T KOG0734|consen  321 EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG  359 (752)
T ss_pred             HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhc
Confidence            68899976554   4566699999999999999999984

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=94.64  E-value=0.021  Score=55.20  Aligned_cols=21  Identities=48%  Similarity=0.738  Sum_probs=19.0

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ||+.|.|||||||+.+++...
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~   21 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKD   21 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHh
Confidence            688999999999999998864

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=94.64  E-value=0.042  Score=59.00  Aligned_cols=121  Identities=16%  Similarity=0.116  Sum_probs=61.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhh-hhhhccCchHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTK-MVMEYCYEPEM  262 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~k-kv~ey~y~~e~  262 (535)
                      -+|+++|.+||||||+.+.|.+++.+... ..+|+..+|-.......               ...+.. ...+...+  .
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i~~~~~-~~~IvtiEdp~E~~~~~---------------~~~~~~~~q~evg~~--~  211 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHCGETYP-DRKIVTYEDPIEYILGS---------------PDDLLPPAQSQIGRD--V  211 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCC-CceEEEEecCchhccCC---------------CceeecccccccCCC--c
Confidence            37899999999999999999887643211 23455544432211100               000000 00000000  0


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                           ..+...++.+|+.. +..++|.-.= ..+.....++.|.. |.. .+-.+++.+....+.|=..
T Consensus       212 -----~~~~~~l~~aLR~~-PD~I~vGEiR-d~et~~~al~aa~T-GH~-v~tTlHa~s~~~ai~Rl~~  271 (372)
T TIGR02525       212 -----DSFANGIRLALRRA-PKIIGVGEIR-DLETFQAAVLAGQS-GHF-CLGTLHVKSPGEAISRCLQ  271 (372)
T ss_pred             -----cCHHHHHHHhhccC-CCEEeeCCCC-CHHHHHHHHHHHhc-CCc-EEEeeCCCCHHHHHHHHHH
Confidence                 01223456667665 4567776543 44555555655544 544 3455555566666666443

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=94.62  E-value=0.026  Score=59.95  Aligned_cols=38  Identities=26%  Similarity=0.431  Sum_probs=28.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      .+..|+++|..|||||||++.|...+.    ...+++...|.
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i~----~~~rivtiEd~  198 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAIP----PQERLITIEDT  198 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcccC----CCCCEEEECCC
Confidence            456799999999999999999987642    22355565554

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=94.60  E-value=0.094  Score=60.24  Aligned_cols=14  Identities=36%  Similarity=0.325  Sum_probs=8.6

Q ss_pred             hhhhhhhhhhccCC
Q 009432           13 DNERRLKLIRDHGG   26 (535)
Q Consensus        13 ~~~~~~~~~r~hg~   26 (535)
                      ..||-||+++--|.
T Consensus       228 ~~e~~lk~~~~~l~  241 (830)
T KOG1923|consen  228 EKERSLKAIARLLE  241 (830)
T ss_pred             HHHHHHHHHHHhcc
Confidence            46777777665443

>PRK07952 DNA replication protein DnaC; Validated

Probab=94.60  E-value=0.027  Score=57.03  Aligned_cols=38  Identities=26%  Similarity=0.426  Sum_probs=28.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ..++|.|.||+|||+||..|+..+... |..+.+++..+
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it~~~  137 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIITVAD  137 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEHHH
Confidence            378999999999999999999887654 33444444333

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=94.58  E-value=0.038  Score=56.87  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=24.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      +|.++|.+|||||||+..|...|...|
T Consensus         3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G   29 (274)
T PRK14493          3 VLSIVGYKATGKTTLVERLVDRLSGRG   29 (274)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            799999999999999999999987765

>cd00154 Rab Rab family

Probab=94.58  E-value=0.027  Score=49.44  Aligned_cols=20  Identities=35%  Similarity=0.488  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|||||||...|..
T Consensus         3 i~~~G~~~~GKStl~~~l~~   22 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVD   22 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=94.56  E-value=0.36  Score=49.10  Aligned_cols=115  Identities=17%  Similarity=0.221  Sum_probs=62.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      ++++|+.|--|+||||+|..|+.++...| ..+.++..|---. ...+...      .  ......    ++   -..+.
T Consensus         3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g-~~vl~iD~D~~n~-~~~~~~~------l--~~~~~~----i~---~~~~i   65 (241)
T PRK13886          3 KIHMVLQGKGGVGKSFIAATIAQYKASKG-QKPLCIDTDPVNA-TFEGYKA------L--NVRRLN----IM---DGDEI   65 (241)
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHHHHhCC-CCEEEEECCCCCc-hhhhHHh------c--CCccee----cc---cCCcc
Confidence            56788889999999999999999887654 3445555552211 1111000      0  000000    00   00011


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHH------HHHHhhcCceEEEEEEec
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQF------WATAKRSGYEVYILEATY  319 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f------~~LAr~~G~~V~vIe~~~  319 (535)
                      ...   .+...+...+..+.  .+|||+.-.......+|      .+++.+.|+.+++..+..
T Consensus        66 ~~r---~fD~Lve~i~~~~~--dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~  123 (241)
T PRK13886         66 NTR---NFDALVEMIASTEG--DVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVT  123 (241)
T ss_pred             chh---hHHHHHHHHhccCC--CEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEEC
Confidence            111   12223344444555  68898765554444443      578899999997776653

>PRK06620 hypothetical protein; Validated

Probab=94.56  E-value=0.026  Score=55.75  Aligned_cols=23  Identities=35%  Similarity=0.886  Sum_probs=20.1

Q ss_pred             EEEEEEccCCChHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      -.++|+|.||||||||++.++..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~   67 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNL   67 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999998754

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=94.53  E-value=0.045  Score=57.74  Aligned_cols=40  Identities=25%  Similarity=0.391  Sum_probs=27.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      +..||++|.+|||||||++.|...+.+.. ..-+++...|-
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~-~~~rivtiEd~  183 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEIVASA-PEDRLVILEDT  183 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHhcCC-CCceEEEecCC
Confidence            34689999999999999999987653211 12355555543

>PRK06904 replicative DNA helicase; Validated

Probab=94.53  E-value=0.25  Score=54.65  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=28.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...||||.|-||.|||+||-.|+.......|..+.+||..
T Consensus       220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE  259 (472)
T PRK06904        220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE  259 (472)
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            4459999999999999999888765433224444566654

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=94.52  E-value=0.027  Score=52.14  Aligned_cols=20  Identities=25%  Similarity=0.323  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.||+|||||++.+..
T Consensus         4 v~l~G~~g~GKTtl~~~~~~   23 (180)
T cd04137           4 IAVLGSRSVGKSSLTVQFVE   23 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            77999999999999999874

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=94.52  E-value=0.095  Score=60.94  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=22.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      +++|.|.||+||||+++.+.+.+...
T Consensus       370 ~~il~G~aGTGKTtll~~i~~~~~~~  395 (744)
T TIGR02768       370 IAVVVGRAGTGKSTMLKAAREAWEAA  395 (744)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHHHhC
Confidence            78999999999999999998776443

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>PRK09165 replicative DNA helicase; Provisional

Probab=94.52  E-value=0.29  Score=54.37  Aligned_cols=26  Identities=31%  Similarity=0.293  Sum_probs=22.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...||||.|.||.||||||-.++...
T Consensus       216 ~g~livIaarpg~GKT~~al~ia~~~  241 (497)
T PRK09165        216 PSDLIILAGRPSMGKTALATNIAFNA  241 (497)
T ss_pred             CCceEEEEeCCCCChHHHHHHHHHHH
Confidence            45699999999999999998876554

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.075  Score=60.25  Aligned_cols=64  Identities=27%  Similarity=0.423  Sum_probs=0.0

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA  265 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~  265 (535)
                      |+|||+||+|||-|||+++   .|.|-....|                           ..-+++.+     |.-+.+.+
T Consensus       548 vLL~GPPGCGKTLlAKAVA---NEag~NFisV---------------------------KGPELlNk-----YVGESErA  592 (802)
T KOG0733|consen  548 VLLCGPPGCGKTLLAKAVA---NEAGANFISV---------------------------KGPELLNK-----YVGESERA  592 (802)
T ss_pred             eEEeCCCCccHHHHHHHHh---hhccCceEee---------------------------cCHHHHHH-----HhhhHHHH


Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEe
Q 009432          266 YRSSMLKAFTRTLDEGNFTIVIVD  289 (535)
Q Consensus       266 ~~q~llk~akkaLk~G~f~~VIVD  289 (535)
                      +++..+++     +...++++.+|
T Consensus       593 VR~vFqRA-----R~saPCVIFFD  611 (802)
T KOG0733|consen  593 VRQVFQRA-----RASAPCVIFFD  611 (802)
T ss_pred             HHHHHHHh-----hcCCCeEEEec

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=94.51  E-value=0.046  Score=56.80  Aligned_cols=40  Identities=28%  Similarity=0.350  Sum_probs=27.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      +..|+++|.+||||||+++.|...+... ...-+|+...|.
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~~~-~~~~ri~tiEd~  171 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIAKN-DPTDRVVIIEDT  171 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcc-CCCceEEEECCc
Confidence            3468899999999999999998775321 012355555553

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=94.49  E-value=0.46  Score=45.90  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=19.6

Q ss_pred             EEEEEEccCCChHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      .+++|+|..|||||||.|.|.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            489999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK15494 era GTPase Era; Provisional

Probab=94.46  E-value=0.33  Score=51.17  Aligned_cols=32  Identities=19%  Similarity=0.310  Sum_probs=24.8

Q ss_pred             CCCCCCCCCcEEEEEEccCCChHHHHHHHHHH
Q 009432          174 QPHRATRPDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       174 ~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .++.....+..-|+|+|.||+|||||...|..
T Consensus        43 ~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~   74 (339)
T PRK15494         43 KFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIG   74 (339)
T ss_pred             ccccccccceeEEEEEcCCCCCHHHHHHHHhC
Confidence            33444445556799999999999999999874

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=94.45  E-value=0.65  Score=51.05  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=22.2

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      -++|.|.+|+|||||++.+...+.+.
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~~l~~~  168 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVHALRES  168 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            36788999999999999999877554

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=94.43  E-value=0.53  Score=54.73  Aligned_cols=25  Identities=28%  Similarity=0.503  Sum_probs=22.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..++++|.+|.||||+|+.|++.+
T Consensus        40 ~HAYLF~GP~GtGKTt~AriLAk~L   64 (725)
T PRK07133         40 SHAYLFSGPRGTGKTSVAKIFANAL   64 (725)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHh
Confidence            5678999999999999999999875

>PRK13764 ATPase; Provisional

Probab=94.42  E-value=0.046  Score=62.08  Aligned_cols=28  Identities=32%  Similarity=0.568  Sum_probs=24.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .+..|+++|.+||||||+++.|...+..
T Consensus       256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~  283 (602)
T PRK13764        256 RAEGILIAGAPGAGKSTFAQALAEFYAD  283 (602)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3456999999999999999999987643

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=94.41  E-value=0.031  Score=50.18  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=18.9

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      -|+++|.+|+|||||++++..
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~   22 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMY   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999999874

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=94.40  E-value=0.61  Score=44.27  Aligned_cols=25  Identities=28%  Similarity=0.357  Sum_probs=22.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..+++.|.+|.||||+|+.+++.+
T Consensus        14 ~~~~L~~G~~G~gkt~~a~~~~~~l   38 (188)
T TIGR00678        14 AHAYLFAGPEGVGKELLALALAKAL   38 (188)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999998875

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK06851 hypothetical protein; Provisional

Probab=94.39  E-value=0.055  Score=58.05  Aligned_cols=30  Identities=37%  Similarity=0.568  Sum_probs=25.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      ...++||.|.||+|||||.++|.+.+.+.|
T Consensus        29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g   58 (367)
T PRK06851         29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKG   58 (367)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999998876653

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=94.38  E-value=0.03  Score=63.40  Aligned_cols=29  Identities=31%  Similarity=0.382  Sum_probs=25.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .++.+++|+|+||+||||||+.|++.+.+
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~le~  129 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLMER  129 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence            35569999999999999999999998643

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=94.34  E-value=0.41  Score=48.24  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=25.6

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      ++|+|++......-..++..++..+.++.++.-.+
T Consensus        92 i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~  126 (268)
T cd04170          92 LVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKM  126 (268)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            88999988766666677778888888776654433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=94.32  E-value=0.037  Score=55.43  Aligned_cols=24  Identities=42%  Similarity=0.581  Sum_probs=22.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++|-+-|+.||||||+|+.|+++|
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~L   28 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKL   28 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHh
Confidence            789999999999999999999986

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=94.32  E-value=0.033  Score=49.71  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.8

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      =|+|+|.+|+|||||.+++..
T Consensus         3 ki~iiG~~~vGKTsl~~~~~~   23 (162)
T cd04138           3 KLVVVGAGGVGKSALTIQLIQ   23 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378899999999999999874

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=94.31  E-value=0.047  Score=52.23  Aligned_cols=25  Identities=36%  Similarity=0.515  Sum_probs=23.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++|+|++|+|||.+|+.|++.+
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l   27 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELL   27 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999999986

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PHA02624 large T antigen; Provisional

Probab=94.30  E-value=0.05  Score=61.75  Aligned_cols=27  Identities=33%  Similarity=0.434  Sum_probs=25.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +++.+|++.|+|||||||||+.|.+.+
T Consensus       429 PKk~~il~~GPpnTGKTtf~~sLl~~L  455 (647)
T PHA02624        429 PKRRYWLFKGPVNSGKTTLAAALLDLC  455 (647)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            677899999999999999999999875

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=94.30  E-value=0.034  Score=50.39  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=18.2

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+++|.+|+|||||++++..
T Consensus         3 i~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        3 LVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78889999999999999874

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=94.30  E-value=0.042  Score=53.37  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=25.1

Q ss_pred             CCCCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +......+|.++|.+|||||||.+.+...+
T Consensus        17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~   46 (207)
T TIGR00073        17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNL   46 (207)
T ss_pred             hhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344567899999999999999999988764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=94.30  E-value=0.51  Score=53.27  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..++++|.+|+||||+|+.|++.+
T Consensus        38 ~hayLf~Gp~GtGKTt~Ak~lAkal   62 (559)
T PRK05563         38 SHAYLFSGPRGTGKTSAAKIFAKAV   62 (559)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999875

>PRK07773 replicative DNA helicase; Validated

Probab=94.29  E-value=0.3  Score=57.92  Aligned_cols=41  Identities=20%  Similarity=0.075  Sum_probs=30.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ...+|||.|-||+|||+||-.++.......+..+.+||.+.
T Consensus       216 ~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEm  256 (886)
T PRK07773        216 PGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEM  256 (886)
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            45699999999999999999988765433344555666543

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=94.28  E-value=0.043  Score=55.10  Aligned_cols=129  Identities=13%  Similarity=0.106  Sum_probs=65.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ....|+++|.+||||||+++.|.+.+...   .-+++...|.........             ...       .+...  
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~~~---~~~iv~iEd~~E~~l~~~-------------~~~-------~~~~~--  180 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIPPE---DERIVTIEDPPELRLPGP-------------NQI-------QIQTR--  180 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCHTT---TSEEEEEESSS-S--SCS-------------SEE-------EEEEE--
T ss_pred             cceEEEEECCCccccchHHHHHhhhcccc---ccceEEeccccceeeccc-------------ceE-------EEEee--
Confidence            36799999999999999999998875322   134544443222111100             000       00000  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---CCCHHHH
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---GFTLDDI  338 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---~VpeEvI  338 (535)
                      ..   ...+.+.++.+|+.+ +..+||.-.-.... . .+++ |...|-.+.+-.+++.+....+.|=..   ..+.+.+
T Consensus       181 ~~---~~~~~~~l~~~LR~~-pD~iiigEiR~~e~-~-~~~~-a~~tGh~~~~tT~Ha~s~~~~i~Rl~~l~~~~~~~~l  253 (270)
T PF00437_consen  181 RD---EISYEDLLKSALRQD-PDVIIIGEIRDPEA-A-EAIQ-AANTGHLGSLTTLHANSAEDAIERLADLGMEMDPESL  253 (270)
T ss_dssp             TT---TBSHHHHHHHHTTS---SEEEESCE-SCHH-H-HHHH-HHHTT-EEEEEEEE-SSHHHHHHHHHHHCCTSCHHHH
T ss_pred             cC---cccHHHHHHHHhcCC-CCcccccccCCHhH-H-HHHH-hhccCCceeeeeeecCCHHHHHHHHHHHhcccCHHHH
Confidence            00   001223345567666 46888886554433 3 2344 444566665666666677766666433   3565655


Q ss_pred             HHHh
Q 009432          339 ERMA  342 (535)
Q Consensus       339 e~M~  342 (535)
                      ..+.
T Consensus       254 ~~~l  257 (270)
T PF00437_consen  254 RSRL  257 (270)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK12608 transcription termination factor Rho; Provisional

Probab=94.27  E-value=0.18  Score=54.41  Aligned_cols=24  Identities=13%  Similarity=0.227  Sum_probs=20.9

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      ++|+|.||+|||||++.|+..+..
T Consensus       136 ~LIvG~pGtGKTTLl~~la~~i~~  159 (380)
T PRK12608        136 GLIVAPPRAGKTVLLQQIAAAVAA  159 (380)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            488999999999999999887654

>CHL00176 ftsH cell division protein; Validated

Probab=94.27  E-value=0.077  Score=60.75  Aligned_cols=25  Identities=32%  Similarity=0.517  Sum_probs=21.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .+.-|+|.|.||+|||+||+.|+..
T Consensus       215 ~p~gVLL~GPpGTGKT~LAralA~e  239 (638)
T CHL00176        215 IPKGVLLVGPPGTGKTLLAKAIAGE  239 (638)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3445899999999999999999865

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=94.26  E-value=0.042  Score=58.00  Aligned_cols=37  Identities=19%  Similarity=0.217  Sum_probs=27.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      +..|+++|.+|||||||.+.|...+.    ..-+|+...|-
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~ip----~~~ri~tiEd~  196 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIP----AIERLITVEDA  196 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhCC----CCCeEEEecCC
Confidence            45799999999999999999987642    22356565553

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.25  E-value=0.17  Score=52.27  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=23.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+..++-|+|-+||||||++|.|...+
T Consensus        37 ~~ge~~glVGESG~GKSTlgr~i~~L~   63 (268)
T COG4608          37 KEGETLGLVGESGCGKSTLGRLILGLE   63 (268)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHcCc
Confidence            345589999999999999999999764

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=94.24  E-value=0.035  Score=53.43  Aligned_cols=25  Identities=32%  Similarity=0.413  Sum_probs=21.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..++.|+|..|||||||++.|+-.+
T Consensus        27 G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          27 GEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4489999999999999999998653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=94.22  E-value=0.21  Score=54.77  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=20.9

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      ++|+|.+|+|||||++.+...+.+
T Consensus       144 l~i~G~~G~GKTHLl~Ai~~~l~~  167 (450)
T PRK14087        144 LFIYGESGMGKTHLLKAAKNYIES  167 (450)
T ss_pred             eEEECCCCCcHHHHHHHHHHHHHH
Confidence            788999999999999999876543

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=94.21  E-value=0.058  Score=56.71  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=22.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+..|+++|.+|||||||++.|....
T Consensus       147 ~~~~ilI~G~tGSGKTTll~aL~~~~  172 (319)
T PRK13894        147 AHRNILVIGGTGSGKTTLVNAIINEM  172 (319)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            34578999999999999999998753

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=94.21  E-value=0.052  Score=56.56  Aligned_cols=40  Identities=30%  Similarity=0.494  Sum_probs=31.3

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      =++|.|.||.|||+||+.+++.+   +....+|.+.+|+....
T Consensus        45 ~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l~p~d   84 (329)
T COG0714          45 HVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDLLPSD   84 (329)
T ss_pred             CEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCCCHHH
Confidence            37889999999999999999876   35567777776665443

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=94.20  E-value=0.041  Score=52.13  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=18.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.++.|+||+||||++..+...+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            78999999999998887776665

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=94.19  E-value=0.038  Score=53.46  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=22.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|+-.+
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            34589999999999999999998653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=94.18  E-value=0.12  Score=56.78  Aligned_cols=27  Identities=30%  Similarity=0.418  Sum_probs=23.5

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...+..|+|.|+||+|||+||++++..
T Consensus       273 ~~~~~giLl~GpPGtGKT~lAkava~~  299 (494)
T COG0464         273 LRPPKGVLLYGPPGTGKTLLAKAVALE  299 (494)
T ss_pred             CCCCCeeEEECCCCCCHHHHHHHHHhh
Confidence            355669999999999999999999964

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=94.15  E-value=0.048  Score=49.97  Aligned_cols=26  Identities=27%  Similarity=0.270  Sum_probs=22.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...+|+|.|-=|||||||+|.|++.+
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            44699999999999999999999875

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=94.14  E-value=0.043  Score=53.18  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=22.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|.-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            45699999999999999999997543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.13  E-value=0.038  Score=53.51  Aligned_cols=25  Identities=32%  Similarity=0.480  Sum_probs=21.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..++.|+|..|||||||++.|.-.+
T Consensus        29 Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        29 GEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3489999999999999999998643

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=94.12  E-value=0.041  Score=52.31  Aligned_cols=24  Identities=33%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|.-.
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            448999999999999999999854

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd04155 Arl3 Arl3 subfamily

Probab=94.10  E-value=0.044  Score=50.18  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=21.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...-|+|+|.+|||||||.+.|..
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~   36 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLAS   36 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhc
Confidence            356699999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.10  E-value=0.043  Score=52.80  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=22.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|.-.+
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34589999999999999999998653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.09  E-value=0.036  Score=53.49  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++.|+|..|||||||++.|...+
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998643

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=94.09  E-value=0.039  Score=54.32  Aligned_cols=26  Identities=23%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|+-.+
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34589999999999999999998643

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=94.09  E-value=0.042  Score=53.22  Aligned_cols=26  Identities=31%  Similarity=0.227  Sum_probs=22.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|.-.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34489999999999999999998643

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.08  E-value=0.043  Score=52.57  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=21.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|.+|||||||++.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3448999999999999999999865

>smart00175 RAB Rab subfamily of small GTPases

Probab=94.08  E-value=0.039  Score=49.58  Aligned_cols=20  Identities=45%  Similarity=0.581  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+++|.||||||||.+++..
T Consensus         3 v~v~G~~~~GKTtli~~l~~   22 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTD   22 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999874

Rab GTPases are implicated in vesicle trafficking.

>cd00876 Ras Ras family

Probab=94.08  E-value=0.04  Score=49.11  Aligned_cols=20  Identities=30%  Similarity=0.451  Sum_probs=18.3

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|||||||.+.|..
T Consensus         2 i~i~G~~~~GKTsli~~l~~   21 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVK   21 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999874

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=94.07  E-value=0.04  Score=53.96  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=22.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||++.|.-.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            4458999999999999999999854

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd01862 Rab7 Rab7 subfamily

Probab=94.06  E-value=0.039  Score=50.10  Aligned_cols=20  Identities=25%  Similarity=0.464  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+++|.+|||||||++.|..
T Consensus         3 i~viG~~~~GKSsl~~~l~~   22 (172)
T cd01862           3 VIILGDSGVGKTSLMNQYVN   22 (172)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999874

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01884 EF_Tu EF-Tu subfamily

Probab=94.04  E-value=0.25  Score=48.00  Aligned_cols=24  Identities=13%  Similarity=0.159  Sum_probs=20.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +-|.++|.+++|||||+.+|....
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~   26 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVL   26 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999987643

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=94.04  E-value=0.041  Score=53.95  Aligned_cols=26  Identities=31%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|+-.+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34589999999999999999998543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=94.04  E-value=0.041  Score=53.09  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=22.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|.-.+
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34489999999999999999998653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=94.02  E-value=0.041  Score=57.18  Aligned_cols=23  Identities=30%  Similarity=0.598  Sum_probs=20.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .++++|.||+||||+|+.++..+
T Consensus        53 ~~ll~GppG~GKT~la~~ia~~l   75 (328)
T PRK00080         53 HVLLYGPPGLGKTTLANIIANEM   75 (328)
T ss_pred             cEEEECCCCccHHHHHHHHHHHh
Confidence            57889999999999999999764

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=94.01  E-value=0.045  Score=52.85  Aligned_cols=26  Identities=27%  Similarity=0.428  Sum_probs=22.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|.-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44589999999999999999998643

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=94.01  E-value=0.039  Score=48.61  Aligned_cols=20  Identities=35%  Similarity=0.591  Sum_probs=18.3

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+++|.+|+|||||.++|..
T Consensus         2 i~i~G~~~~GKssl~~~l~~   21 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAG   21 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHcc
Confidence            68999999999999999974

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=94.00  E-value=0.18  Score=60.33  Aligned_cols=31  Identities=13%  Similarity=0.350  Sum_probs=24.3

Q ss_pred             EEEEe-CCCCCHHHHHHHHHHHhhcCceEEEE
Q 009432          285 IVIVD-DRNLRVADFAQFWATAKRSGYEVYIL  315 (535)
Q Consensus       285 ~VIVD-aTN~~~~~R~~f~~LAr~~G~~V~vI  315 (535)
                      ++||| +..+.......+++.|...|.++++|
T Consensus       436 vlIVDEASMv~~~~m~~LL~~a~~~garvVLV  467 (988)
T PRK13889        436 VLVIDEAGMVGTRQLERVLSHAADAGAKVVLV  467 (988)
T ss_pred             EEEEECcccCCHHHHHHHHHhhhhCCCEEEEE
Confidence            88888 67777788888888888888766444

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=93.99  E-value=0.043  Score=56.14  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=20.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .++++|.||+||||+|+.+++.+
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l   60 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALAREL   60 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            37799999999999999998875

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=93.95  E-value=0.047  Score=52.62  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||++.|+-.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3448999999999999999999854

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=93.94  E-value=0.044  Score=49.22  Aligned_cols=20  Identities=40%  Similarity=0.494  Sum_probs=18.6

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+++|.+|+|||||.++|..
T Consensus         3 i~~vG~~~vGKTsli~~l~~   22 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCE   22 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=93.93  E-value=0.044  Score=53.41  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=20.6

Q ss_pred             EEEEEEccCCChHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .+++|+|..|||||||.|.|.-.
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~   48 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVN   48 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHH
Confidence            58999999999999999998743

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.93  E-value=0.046  Score=53.72  Aligned_cols=26  Identities=27%  Similarity=0.370  Sum_probs=22.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|.-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34489999999999999999998643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=93.92  E-value=0.37  Score=49.98  Aligned_cols=41  Identities=24%  Similarity=0.169  Sum_probs=29.7

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      .|.+|-  +-  -+...++=++|.+||||||+|-+++......|+
T Consensus        49 LD~~LG--GG--l~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~   89 (279)
T COG0468          49 LDEALG--GG--LPRGRITEIYGPESSGKTTLALQLVANAQKPGG   89 (279)
T ss_pred             HHHHhc--CC--cccceEEEEecCCCcchhhHHHHHHHHhhcCCC
Confidence            455555  32  256679999999999999999998766544444

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=93.91  E-value=0.072  Score=55.86  Aligned_cols=40  Identities=28%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      .+..+|-++|.||+|||||.-.|...+.+.| ..+.|+..|
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G-~rVaVlAVD   88 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERG-HRVAVLAVD   88 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCC-cEEEEEEEC
Confidence            3456999999999999999999988888775 344555544

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=93.90  E-value=0.079  Score=55.18  Aligned_cols=30  Identities=20%  Similarity=0.174  Sum_probs=25.8

Q ss_pred             CCCCcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ....-.+|-|.|.||||||||.+.+...+.
T Consensus       100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~  129 (290)
T PRK10463        100 AARKQLVLNLVSSPGSGKTTLLTETLMRLK  129 (290)
T ss_pred             HhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345678999999999999999999988753

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=93.89  E-value=0.047  Score=54.26  Aligned_cols=23  Identities=39%  Similarity=0.703  Sum_probs=19.1

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      =|+|.|.||+|||++|+.|...+
T Consensus        24 ~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   24 HLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             -EEEES-CCCTHHHHHHHHHHCS
T ss_pred             CeEEECCCCCCHHHHHHHHHHhC
Confidence            48899999999999999998754

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>cd04169 RF3 RF3 subfamily

Probab=93.88  E-value=0.59  Score=47.73  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=19.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .|.|+|.+|||||||+.+|.-.
T Consensus         4 ni~ivGh~~~GKTTL~e~ll~~   25 (267)
T cd04169           4 TFAIISHPDAGKTTLTEKLLLF   25 (267)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            5899999999999999998743

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=93.86  E-value=0.049  Score=53.12  Aligned_cols=26  Identities=31%  Similarity=0.413  Sum_probs=22.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|.-.+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34589999999999999999998754

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=93.85  E-value=0.046  Score=53.51  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=22.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|+..+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44589999999999999999998654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00767 rho transcription termination factor Rho

Probab=93.85  E-value=0.33  Score=53.00  Aligned_cols=25  Identities=12%  Similarity=0.173  Sum_probs=21.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ..++++|.+|+|||||++.|...+.
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHhhc
Confidence            3688999999999999999987643

Members of this family differ in the specificity of RNA binding.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=93.85  E-value=0.05  Score=52.43  Aligned_cols=26  Identities=35%  Similarity=0.526  Sum_probs=22.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|..|||||||++.|.-.+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34589999999999999999998653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=93.84  E-value=0.057  Score=59.07  Aligned_cols=25  Identities=36%  Similarity=0.486  Sum_probs=22.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.-|+|+|+||+||||||+.|++.+
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l   74 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLA   74 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999999875

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=93.82  E-value=0.046  Score=49.30  Aligned_cols=20  Identities=35%  Similarity=0.574  Sum_probs=18.3

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.+++..
T Consensus         2 i~i~G~~~~GKTsl~~~~~~   21 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKH   21 (160)
T ss_pred             EEEEcCCCCCHHHHHHHHhc
Confidence            68899999999999999974

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=93.81  E-value=0.054  Score=52.96  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=22.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|.+|||||||++.|.-.+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            34589999999999999999998654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=93.81  E-value=0.048  Score=52.48  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=21.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..++.|+|..|||||||.+.|+-.+
T Consensus        26 G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          26 GEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4489999999999999999998653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd04136 Rap_like Rap-like subfamily

Probab=93.81  E-value=0.048  Score=49.11  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=18.5

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      =|+++|.+|+|||||+.++..
T Consensus         3 ki~i~G~~~vGKTsl~~~~~~   23 (163)
T cd04136           3 KVVVLGSGGVGKSALTVQFVQ   23 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478899999999999998874

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01894 EngA1 EngA1 subfamily

Probab=93.81  E-value=0.55  Score=41.57  Aligned_cols=35  Identities=14%  Similarity=0.119  Sum_probs=22.7

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      ++|+|+.......-..+.+++++.+.++.++.-.+
T Consensus        81 i~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~  115 (157)
T cd01894          81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKV  115 (157)
T ss_pred             EEEEeccccCCccHHHHHHHHHhcCCCEEEEEECc
Confidence            77888865433333456677777787776666554

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=93.79  E-value=0.044  Score=51.54  Aligned_cols=21  Identities=43%  Similarity=0.613  Sum_probs=19.2

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |+|+|..|||||||+++|...
T Consensus         4 imliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    4 IMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999999854

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=93.79  E-value=0.045  Score=50.84  Aligned_cols=29  Identities=41%  Similarity=0.641  Sum_probs=19.5

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEE
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRI  217 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rI  217 (535)
                      |+|-|.||.||||+|+.|++.+   ++...||
T Consensus         2 vLleg~PG~GKT~la~~lA~~~---~~~f~RI   30 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSL---GLSFKRI   30 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHT---T--EEEE
T ss_pred             EeeECCCccHHHHHHHHHHHHc---CCceeEE
Confidence            6899999999999999999863   4444444

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=93.79  E-value=0.049  Score=52.13  Aligned_cols=25  Identities=32%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..++.|+|..|||||||.+.|+-.+
T Consensus        24 Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        24 GKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            4489999999999999999998653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd01898 Obg Obg subfamily

Probab=93.79  E-value=0.046  Score=49.67  Aligned_cols=20  Identities=35%  Similarity=0.604  Sum_probs=18.5

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.+.|..
T Consensus         3 v~ivG~~~~GKStl~~~l~~   22 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISN   22 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999974

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.79  E-value=0.18  Score=54.09  Aligned_cols=26  Identities=31%  Similarity=0.560  Sum_probs=22.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..|.=|+|.|+||+|||-|||+++..
T Consensus       183 ~PPKGVLLYGPPGTGKTLLAkAVA~~  208 (406)
T COG1222         183 DPPKGVLLYGPPGTGKTLLAKAVANQ  208 (406)
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence            45667899999999999999999853

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=93.79  E-value=0.054  Score=50.98  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||.+.|.-.
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3458999999999999999999854

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=93.78  E-value=0.046  Score=52.77  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||++.|.-.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~   48 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGL   48 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4458999999999999999999764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=93.78  E-value=0.049  Score=52.99  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||++.|.-.
T Consensus        30 G~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          30 GEFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=93.78  E-value=0.051  Score=53.39  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=21.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||++.|+-.
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGL   58 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3458999999999999999999864

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=93.77  E-value=0.49  Score=55.10  Aligned_cols=118  Identities=18%  Similarity=0.202  Sum_probs=0.0

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA  265 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~  265 (535)
                      ++|.|.||+||||+|+.|....      ....+..+........                                    
T Consensus        55 lLL~GPpGtGKTTLA~aIA~~~------~~~f~~lna~~~~i~d------------------------------------   92 (725)
T PRK13341         55 LILYGPPGVGKTTLARIIANHT------RAHFSSLNAVLAGVKD------------------------------------   92 (725)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh------cCcceeehhhhhhhHH------------------------------------


Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--------CCCHHH
Q 009432          266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--------GFTLDD  337 (535)
Q Consensus       266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--------~VpeEv  337 (535)
                      ..+.+.......-..+...++|||....-.......+--.-+.+.-+.+...+.........+-..        ..+.+.
T Consensus        93 ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~ed  172 (725)
T PRK13341         93 LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDED  172 (725)
T ss_pred             HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHH


Q ss_pred             HHHHhhcc
Q 009432          338 IERMAGQW  345 (535)
Q Consensus       338 Ie~M~krf  345 (535)
                      +..+.+++
T Consensus       173 i~~IL~~~  180 (725)
T PRK13341        173 LHQLLKRA  180 (725)
T ss_pred             HHHHHHHH

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=93.75  E-value=0.05  Score=52.34  Aligned_cols=20  Identities=45%  Similarity=0.687  Sum_probs=0.0

Q ss_pred             EEEEEccCCChHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ++.|+|..|||||||.+.|+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~   47 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILA   47 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHh

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	535
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	4e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	2e-12
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	4e-10
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	3e-07
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	2e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	2e-04
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	6e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-04

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 78.7 bits (194), Expect = 4e-17
 Identities = 34/170 (20%), Positives = 51/170 (30%), Gaps = 29/170 (17%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRS 245
           I+  G PGSGKS  A+      +        I + DDY  + +   E             
Sbjct: 5   ILTIGCPGSGKSTWAREF----IAKNPGFYNI-NRDDYRQSIMAHEERD----------- 48

Query: 246 KKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFT-IVIVDDRNLRVADFAQFWAT 304
                    EY Y  + E              L  G+    VI+ D NL       +   
Sbjct: 49  ---------EYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETF 99

Query: 305 AKRSGYEVYI--LEATYK-DPAGCAARNVHGFTLDDIERMAGQWEEAPTL 351
           AK  G++V     +  +       + R      +D +  M     E   L
Sbjct: 100 AKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGL 149

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.5 bits (182), Expect = 4e-14
 Identities = 54/393 (13%), Positives = 123/393 (31%), Gaps = 100/393 (25%)

Query: 128 TRVSSELISEESRTLPMQYPGESHLFPLRQLSPDKPKVVNAL--HLLKQPHRATRPDHFA 185
           + ++   I +  R        ++ +F    +S  + +    L   LL+      RP    
Sbjct: 106 SMMTRMYIEQRDRLY-----NDNQVFAKYNVS--RLQPYLKLRQALLEL-----RPAKN- 152

Query: 186 IILRGLPGSGKSYIAKM-LRDLEVENGGDAPRIHSMDD--YFMTEVEKVEDSDVSKSSGS 242
           +++ G+ GSGK+++A       +V+          MD   +++          V +    
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQC--------KMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 243 LRSKKPVTKMVMEYCYEPEMEEAYR---SSMLKAFTRTLDEGNF--TIVIVDD-RNLRVA 296
           L     + ++   +    +     +    S+     R L    +   ++++ + +N +  
Sbjct: 205 L-----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 297 D-F---AQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLY 352
           + F    +   T +      ++  AT          +    T D+++ +  ++       
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKY------- 310

Query: 353 LQLDIKTLFHGDDLKE----------SGIKEVEMDMDEDSDGLL-AQQEKETNSIAVSIT 401
             LD +      DL            S I E   D     D       +K T  I  S+ 
Sbjct: 311 --LDCRP----QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 402 GEDPP---------ADFPRNEKRWDAEGDRPAEVVKDLGSSKWSNDLNEDDDE------- 445
             +P          + FP +          P  ++  +    W + +  D          
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAH-------IPTILLSLI----WFDVIKSDVMVVVNKLHK 413

Query: 446 TSGVVKGNSNALSGLFQLYVK------EGKSVH 472
            S V K    +   +  +Y++         ++H
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 1e-10
 Identities = 72/455 (15%), Positives = 126/455 (27%), Gaps = 127/455 (27%)

Query: 170 HLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMD-DYFMTE 227
           H++      +        L       +  + K + ++   N       I +      M  
Sbjct: 53  HIIMSKDAVSGTLRLFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 228 VEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTI-- 285
              +E  D   +   + +K  V++         +     R ++L+   R     N  I  
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSR--------LQPYLKLRQALLEL--R--PAKNVLIDG 157

Query: 286 ------------VIVDDRNLRVADFAQFWATAKRSGYEVYILEATYK-----DPAGCAAR 328
                       V +  +     DF  FW   K       +LE   K     DP    +R
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-SR 216

Query: 329 NVHGFT----LDDIE---RMAGQWEEAPTLYLQLD--------------IKTLF------ 361
           + H       +  I+   R   + +      L L                K L       
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 362 HGDDLKESGIKEVEMDMDEDSDGLLAQQEKETNSIAVSITGEDPPADFPRNEKRWDAEGD 421
             D L  S      + +D  S  L      E  S+ +       P D PR     +    
Sbjct: 277 VTDFL--SAATTTHISLDHHSMTL---TPDEVKSLLLKYLDCR-PQDLPR-----EVLTT 325

Query: 422 RP------AEVVKDLGSSKWSNDLNEDDDETSGVVKGNSNALS--GLFQLYVKEG---KS 470
            P      AE ++D G + W N  + + D+ + +++ + N L      +++ +      S
Sbjct: 326 NPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 471 VH---------WGDQVGDTGFSIGAAKKSKMLSLVIGPGAGY----------------NL 505
            H         W D +      +    K    SLV                       N 
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 506 VSLAAVMV-AYNL----DCWK--------YFSQFV 527
            +L   +V  YN+    D           YF   +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 34/171 (19%), Positives = 51/171 (29%), Gaps = 29/171 (16%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRS 245
           I+  G PGSGKS  A+      +        I + DDY  + +   E             
Sbjct: 5   ILTIGCPGSGKSTWAREF----IAKNPGFYNI-NRDDYRQSIMAHEERD----------- 48

Query: 246 KKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEG-NFTIVIVDDRNLRVADFAQFWAT 304
                    EY Y  + E              L  G +   VI+ D NL       +   
Sbjct: 49  ---------EYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETF 99

Query: 305 AKRSGYEVYI--LEATYK-DPAGCAARNVHGFTLDDIERMAGQWEEAPTLY 352
           AK  G++V     +  +       + R      +D +  M     E   L 
Sbjct: 100 AKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLP 150

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 38/165 (23%), Positives = 56/165 (33%), Gaps = 36/165 (21%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRS 245
           IIL GLPG GKS  +K L  +  +N  D                 V  SD       +R 
Sbjct: 7   IILTGLPGVGKSTFSKNLAKILSKNNIDVI---------------VLGSD------LIRE 45

Query: 246 KKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATA 305
             PV        ++ + EE  + S  +     L       VIVDD N   +        A
Sbjct: 46  SFPV--------WKEKYEEFIKKSTYRLIDSALKNY---WVIVDDTNYYNSMRRDLINIA 94

Query: 306 KRSGYEVYILEATYKDPAGCAARN---VHGFTLDDIERMAGQWEE 347
           K+      I+            RN         + I++M  +++E
Sbjct: 95  KKYNKNYAIIY-LKASLDVLIRRNIERGEKIPNEVIKKMYEKFDE 138

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 49.8 bits (118), Expect = 3e-07
 Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 23/173 (13%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIH-SMDDYFMTEVEKVEDSDVSKSSGSLR 244
           IIL G   +GKS I + L+ +        P +   +D        K++ ++      +  
Sbjct: 6   IILNGGSSAGKSGIVRCLQSVL-----PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADG 60

Query: 245 SKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWAT 304
                               A   +  +        G    +I+DD  L  A   + W +
Sbjct: 61  GV-----------SIGPEFRALEGAWAEGVVAMARAGAR--IIIDDVFLGGAAAQERWRS 107

Query: 305 AKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDI 357
                 +V  +     D A    R       D +  MA +        ++ D+
Sbjct: 108 FVG-DLDVLWVGVRC-DGAVAEGRETA--RGDRVAGMAAKQAYVVHEGVEYDV 156

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 18/163 (11%), Positives = 42/163 (25%), Gaps = 31/163 (19%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRS 245
           II+ G P +GK+ +++ L           P +   D +     + +  SD          
Sbjct: 8   IIVTGHPATGKTTLSQALATGL-----RLPLLSK-DAFKEVMFDGLGWSDRE-------- 53

Query: 246 KKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATA 305
                       +   +       +       L  G    +I++       D  +     
Sbjct: 54  ------------WSRRVGATAIMMLYHTAATILQSGQ--SLIMESNFRVDLDTERMQNLH 99

Query: 306 KRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEA 348
             + +    +            R +    +    R  G  ++ 
Sbjct: 100 TIAPFTPIQIR-CVASGDVLVERILSR--IAQGARHPGHCDDR 139

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 18/151 (11%), Positives = 35/151 (23%), Gaps = 4/151 (2%)

Query: 56  YGPNNQPPPSIPPLPPPQQGYDNFNVQGGY----LPPLPTSPPPPMPVEPPLPSPAPPNT 111
             P    PP  P       G      QG           T     +  +    + +  + 
Sbjct: 24  QQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDM 83

Query: 112 SLFPVHATVPSSYPPITRVSSELISEESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHL 171
            L  V    P++Y             + +  PM  P           +      +  + L
Sbjct: 84  HLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDL 143

Query: 172 LKQPHRATRPDHFAIILRGLPGSGKSYIAKM 202
           L +                +P       +++
Sbjct: 144 LTELPPPITDLTLPPPPLVIPPERMLVPSEL 174

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 13/131 (9%), Positives = 25/131 (19%)

Query: 54  QNYGPNNQPPPSIPPLPPPQQGYDNFNVQGGYLPPLPTSPPPPMPVEPPLPSPAPPNTSL 113
                  Q     P      Q  D        +         P     P           
Sbjct: 51  GAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110

Query: 114 FPVHATVPSSYPPITRVSSELISEESRTLPMQYPGESHLFPLRQLSPDKPKVVNALHLLK 173
                    +Y   +    + +   ++  P+    E          P  P V+    +L 
Sbjct: 111 QQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLV 170

Query: 174 QPHRATRPDHF 184
               +     +
Sbjct: 171 PSELSNASPDY 181

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 17/120 (14%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEK--VEDSDVSKSSGSL 243
           I++ G+PGSGKS  AK+L++        A  I  M D               +   +  L
Sbjct: 4   ILITGMPGSGKSEFAKLLKER------GAKVI-VMSDVVRKRYSIEAKPGERLMDFAKRL 56

Query: 244 RSK-------KPVTKMVMEYCYEPEMEEAYRS-SMLKAFTRTLDEGNFTIVIVDDRNLRV 295
           R         +   + +    ++  + +  RS + ++ F R L +  + + +     +R 
Sbjct: 57  REIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRY 116

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 32/166 (19%), Positives = 52/166 (31%), Gaps = 38/166 (22%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRS 245
           ++L G PGSGKS IA+ L +L        P++H   D     ++                
Sbjct: 12  LLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGRIDP---------- 56

Query: 246 KKPVTKMVMEYCYEPEMEEAYR---SSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFW 302
                       + P+  +  R           R   EG F  VI+D   +   D+   +
Sbjct: 57  ------------WLPQSHQQNRMIMQIAADVAGRYAKEGYF--VILDG--VVRPDWLPAF 100

Query: 303 ATAKRSGYEVYILEATYKDPAG-CAARNVHGFTLDDIERMAGQWEE 347
               R      +L  T  +    C  R     +  D   +A    +
Sbjct: 101 TALARP-LHYIVLRTTAAEAIERCLDRGGDSLS--DPLVVADLHSQ 143

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 14/71 (19%), Positives = 19/71 (26%), Gaps = 1/71 (1%)

Query: 57  GPNNQPPPSIPPLPPPQQGYDNFNVQGGYLPPLPTSPPPPMPVEPPLPSPAPPNTSL-FP 115
                   +                +GG  PP+    PPP  + PP     P    +  P
Sbjct: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIP 206

Query: 116 VHATVPSSYPP 126
                P   PP
Sbjct: 207 PGRGTPMGMPP 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	535
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.63
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.6
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.55
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.54
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.45
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.32
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	99.3
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.29
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.25
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.25
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.2
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.18
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.16
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.12
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.12
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.09
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.08
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.02
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.98
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.97
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.91
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.91
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.91
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.88
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.87
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.86
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.86
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.85
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.83
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.82
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.79
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.77
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.74
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.74
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.73
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.72
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.7
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.62
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.61
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.61
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.6
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.56
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.55
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.51
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.5
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.5
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.47
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.47
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.46
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.45
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.44
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.42
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.38
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.34
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.31
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.31
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.29
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.29
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.28
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.26
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.25
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.19
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.18
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.17
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.16
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.15
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.12
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.1
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.08
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.03
1via_A	175	Shikimate kinase; structural genomics, transferase	98.01
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.01
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.99
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.92
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.91
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.9
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.88
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.86
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.85
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.81
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.8
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.79
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.78
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.76
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.74
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.72
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.66
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.66
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.61
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.54
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.48
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.42
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	97.42
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.39
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	97.31
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.3
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.28
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.25
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.25
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.23
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.16
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.16
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.16
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.13
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.12
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.12
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.1
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.1
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.07
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.06
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.05
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.02
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.01
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.0
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.0
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.99
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.95
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.94
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.93
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.93
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.93
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.93
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.91
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.9
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.89
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.89
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.87
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.87
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.84
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.84
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.82
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.82
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.82
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.81
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.79
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.77
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.73
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.7
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.69
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.67
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.67
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.66
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.65
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.65
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.63
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.62
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.62
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.61
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.61
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.6
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.57
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.56
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.53
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.51
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.5
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.5
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.48
3io5_A	333	Recombination and repair protein; storage dimer, i	96.46
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.43
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.41
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.38
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.37
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.35
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.33
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.31
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.31
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.3
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.28
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.25
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.22
3bos_A	242	Putative DNA replication factor; P-loop containing	96.17
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.16
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.14
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.11
2xxa_A	433	Signal recognition particle protein; protein trans	96.03
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.02
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.02
3pvs_A	447	Replication-associated recombination protein A; ma	96.02
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.02
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.98
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.98
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.95
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.95
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.9
2og2_A	359	Putative signal recognition particle receptor; nuc	95.88
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.86
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.84
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.84
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.83
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.82
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.77
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.76
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.75
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	95.74
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.67
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.67
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.66
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.58
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.57
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.57
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.56
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.56
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.46
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.46
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.44
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.42
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.41
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.37
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	95.37
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.36
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.34
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.3
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.27
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.24
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.23
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.17
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.14
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.09
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.07
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.03
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.01
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.0
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.95
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	94.9
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	94.85
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.81
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.8
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.79
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.77
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	94.75
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	94.74
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.71
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	94.64
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.63
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.61
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.6
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.59
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.57
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.55
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.53
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.53
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.48
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	94.47
3co5_A	143	Putative two-component system transcriptional RES	94.46
2qgz_A	308	Helicase loader, putative primosome component; str	94.44
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.44
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.44
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.42
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.33
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.32
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	94.31
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.3
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	94.27
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	94.26
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.24
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.24
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.23
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.17
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.16
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.12
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.09
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.07
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.07
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	94.06
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.05
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.04
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.02
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.02
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	93.98
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.97
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.93
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	93.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.92
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	93.9
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.89
2r44_A	331	Uncharacterized protein; putative ATPase, structur	93.85
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.85
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.85
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.83
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.82
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	93.81
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	93.81
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.78
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	93.74
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	93.73
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.72
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	93.7
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.69
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	93.69
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	93.67
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	93.66
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	93.64
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.6
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	93.59
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	93.57
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	93.57
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	93.57
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	93.56
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	93.54
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.53
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	93.53
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.53
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.52
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	93.51
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	93.51
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	93.51
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	93.5
1g6h_A	257	High-affinity branched-chain amino acid transport	93.49
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.49
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.49
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.49
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.48
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	93.48
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	93.48
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.47
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.46
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	93.42
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.42
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.4
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.4
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.39
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	93.37
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	93.37
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.37
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	93.35
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.34
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.32
2chq_A	319	Replication factor C small subunit; DNA-binding pr	93.31
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.25
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	93.2
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.18
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	93.17
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.15
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.14
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	93.11
1p9r_A	418	General secretion pathway protein E; bacterial typ	93.1
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	93.1
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	93.06
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	93.05
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	93.04
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	93.02
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.02
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	93.02
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	92.99
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	92.99
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	92.98
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.95
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	92.95
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.95
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	92.95
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	92.94
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.94
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	92.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	92.92
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.88
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.88
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	92.88
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	92.84
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.81
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	92.77
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	92.74
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	92.71
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	92.69
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	92.63
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.6
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	92.57
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	92.57
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	92.56
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	92.55
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	92.54
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.53
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	92.53
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	92.52
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	92.45
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	92.45
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	92.44
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	92.42
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	92.41
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	92.4
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	92.36
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.31
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	92.3
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	92.29
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	92.25
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	92.18
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	92.15
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	92.12
2fna_A	357	Conserved hypothetical protein; structural genomic	92.12
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	92.11
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	92.11
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	92.08
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	92.05
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	92.04
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	92.03
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	92.02
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	92.02
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	92.0
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	91.99
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	91.99
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	91.94
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	91.92
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	91.91
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	91.9
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.89
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	91.88
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	91.88
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	91.86
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	91.85
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	91.85
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	91.83
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	91.83
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.82
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	91.81
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	91.79
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	91.77
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	91.75
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	91.74
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	91.74
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	91.71
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	91.7
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	91.68
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	91.68
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	91.68
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	91.67
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	91.66
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	91.64
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	91.6
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	91.59
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	91.56
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	91.54
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	91.53
2fh5_B	214	SR-beta, signal recognition particle receptor beta	91.53
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.52
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	91.48
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.47
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	91.47
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	91.44
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.44
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	91.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	91.35
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	91.33
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	91.26
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	91.24
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	91.2
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	91.2
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	91.19
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	91.18
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	91.17
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	91.16
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	91.06
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	91.06
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	91.06
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	91.04
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	90.98
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	90.97
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	90.91
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	90.87
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	90.77
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	90.75
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	90.73
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	90.66
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	90.65
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	90.63
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	90.58
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	90.56
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	90.53
3llu_A	196	RAS-related GTP-binding protein C; structural geno	90.53
3ice_A	422	Transcription termination factor RHO; transcriptio	90.51
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	90.49
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	90.49
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	90.42
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	90.4
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	90.31
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	90.28
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	90.28
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	90.26
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	90.24
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	90.23
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	90.17
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	90.1
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	90.06
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	90.05
3end_A	307	Light-independent protochlorophyllide reductase ir	90.04
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	89.99
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	89.98
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	89.98
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	89.9
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	89.73
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	89.73
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	89.72
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	89.7
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	89.69
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	89.68
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	89.66
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	89.58
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	89.58
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	89.56
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	89.55

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.63  E-value=1.2e-15  Score=160.48  Aligned_cols=153  Identities=17%  Similarity=0.163  Sum_probs=116.6

Q ss_pred             CCCCCCCCCCCcCCCCCCCCCcccchhhhhc-CCC-CCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC
Q 009432          143 PMQYPGESHLFPLRQLSPDKPKVVNALHLLK-QPH-RATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM  220 (535)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~p~~v~~~~ll~-~p~-r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~  220 (535)
                      .||++.....|.++.+   +|+.+.....++ ++. ......+.||||+|+|||||||+|+.|++.+    +  ..+++.
T Consensus       219 ~~f~~~~~~~~~~~~f---~p~~~~~~~~~~~p~~~~~~~~~~~lIil~G~pGSGKSTla~~L~~~~----~--~~~i~~  289 (416)
T 3zvl_A          219 EFFLKWPAARFELPAF---DPRTISSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA----G--YVHVNR  289 (416)
T ss_dssp             HHHSCCCCCCBCCCSC---CGGGCCSCSCSSBSTTSCSCCSSCCEEEEESCTTSSHHHHHHHHTGGG----T--CEECCG
T ss_pred             HhhCCCCcCccccCCC---ChhhhcccccccCCCccccCCCCCEEEEEECCCCCCHHHHHHHHHHhc----C--cEEEcc
Confidence            4666766778865555   666666544444 332 4556788999999999999999999998753    1  234454


Q ss_pred             CceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHH
Q 009432          221 DDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQ  300 (535)
Q Consensus       221 DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~  300 (535)
                      |++.                                         .+..+.+.+...|..|.  .||||++|....+|..
T Consensus       290 D~~~-----------------------------------------~~~~~~~~~~~~l~~g~--~vIiD~~~~~~~~r~~  326 (416)
T 3zvl_A          290 DTLG-----------------------------------------SWQRCVSSCQAALRQGK--RVVIDNTNPDVPSRAR  326 (416)
T ss_dssp             GGSC-----------------------------------------SHHHHHHHHHHHHHTTC--CEEEESCCCSHHHHHH
T ss_pred             chHH-----------------------------------------HHHHHHHHHHHHHhcCC--cEEEeCCCCCHHHHHH
Confidence            4321                                         12234556677888998  9999999999999999


Q ss_pred             HHHHHhhcCceEEEEEEecCCHHHHHHhhcC---------CCCHHHHHHHhhccccC
Q 009432          301 FWATAKRSGYEVYILEATYKDPAGCAARNVH---------GFTLDDIERMAGQWEEA  348 (535)
Q Consensus       301 f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---------~VpeEvIe~M~krfE~~  348 (535)
                      ++++++++++.+.+|+|.+ +.++|++|+..         .++++++++|.++||++
T Consensus       327 ~~~~~~~~~~~~~~v~l~~-~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P  382 (416)
T 3zvl_A          327 YIQCAKDAGVPCRCFNFCA-TIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPP  382 (416)
T ss_dssp             HHHHHHHHTCCEEEEEECC-CHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCC
T ss_pred             HHHHHHHcCCeEEEEEEeC-CHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCC
Confidence            9999999999999999987 78888887652         57899999999999974

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.60  E-value=6.1e-15  Score=133.56  Aligned_cols=138  Identities=25%  Similarity=0.228  Sum_probs=101.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      +.+|+|+|+|||||||+|+.|++.   ..+  ..+++.|.++..... ...           +.        ...|....
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~---~~~--~~~i~~d~~r~~~~~-~~~-----------~~--------~~~~~~~~   56 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAK---NPG--FYNINRDDYRQSIMA-HEE-----------RD--------EYKYTKKK   56 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH---STT--EEEECHHHHHHHHTT-SCC-----------GG--------GCCCCHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhh---cCC--cEEecHHHHHHHhhC-CCc-----------cc--------hhhhchhh
Confidence            468999999999999999999972   112  356677665443211 000           00        00122233


Q ss_pred             HHHHHHHHHHHHHHHH---HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCH
Q 009432          263 EEAYRSSMLKAFTRTL---DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTL  335 (535)
Q Consensus       263 ee~~~q~llk~akkaL---k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~Vpe  335 (535)
                      +...++.+...+..+|   +.|.  .||+|+++....+|..|.++++.+|+.+.+|++.+ +.++|++|...    .++.
T Consensus        57 ~~~~~~~~~~~~~~~l~~~~~g~--~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R~~~~~~~  133 (181)
T 1ly1_A           57 EGIVTGMQFDTAKSILYGGDSVK--GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRGTKAVPI  133 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTSCSSCC--EEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCC-CHHHHHHHHTTCGGGCCCH
T ss_pred             hhHHHHHHHHHHHHHHhhccCCC--eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHhccccCCCCH
Confidence            3344555666677788   7888  99999999999999999999999999988888887 88999888654    6789


Q ss_pred             HHHHHHhhccccC
Q 009432          336 DDIERMAGQWEEA  348 (535)
Q Consensus       336 EvIe~M~krfE~~  348 (535)
                      +.|++++++|+..
T Consensus       134 ~~i~~~~~~~~~~  146 (181)
T 1ly1_A          134 DVLRSMYKSMREY  146 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999999975

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.55  E-value=1.9e-14  Score=156.06  Aligned_cols=159  Identities=21%  Similarity=0.320  Sum_probs=105.0

Q ss_pred             CCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh
Q 009432          175 PHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM  254 (535)
Q Consensus       175 p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~  254 (535)
                      .++.....+.+|||+|+|||||||+|++|++++.+. +..+.+|+.|++++........                     
T Consensus        27 ~~~~~~~~~~lIvlvGlpGSGKSTia~~La~~L~~~-~~d~~v~s~D~~r~~~~~~~~~---------------------   84 (520)
T 2axn_A           27 CGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWI-GVPTKVFNVGEYRREAVKQYSS---------------------   84 (520)
T ss_dssp             CCC---CCCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHSCCCC---------------------
T ss_pred             CcccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeEEecccHHHHHhccCCcc---------------------
Confidence            345566788999999999999999999999987654 3455788999977654321000                     


Q ss_pred             hccCchHHHHH------HHHHHHHHHHHHH--HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHH
Q 009432          255 EYCYEPEMEEA------YRSSMLKAFTRTL--DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCA  326 (535)
Q Consensus       255 ey~y~~e~ee~------~~q~llk~akkaL--k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci  326 (535)
                      ...|++..++.      ....+++.+...|  +.|.  +||||+||....+|..++++++++|+.+++|++.|++.+ |+
T Consensus        85 ~~~f~~~~~~~~~~re~~~~~~l~~~~~~L~~~~g~--~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e-~i  161 (520)
T 2axn_A           85 YNFFRPDNEEAMKVRKQCALAALRDVKSYLAKEGGQ--IAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPT-VV  161 (520)
T ss_dssp             GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHSCCC--EEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHH-HH
T ss_pred             ccccCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCc--eEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHH-HH
Confidence            01122222211      1112233445556  5677  999999999999999999999999999999999985444 44


Q ss_pred             Hhhc-----C-----C-CCHHHHHHHhhccccCCccceeecCC
Q 009432          327 ARNV-----H-----G-FTLDDIERMAGQWEEAPTLYLQLDIK  358 (535)
Q Consensus       327 ~RNi-----h-----~-VpeEvIe~M~krfE~~p~~y~~lD~~  358 (535)
                      +||+     .     + .++++++.|.++++.....|..++..
T Consensus       162 ~~ri~~r~~~rPdl~~~d~e~~~~~~~~Ri~~y~~~Yepi~~e  204 (520)
T 2axn_A          162 ASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLDPD  204 (520)
T ss_dssp             HHHHHHHTTTSGGGTTSCHHHHHHHHHHHHHHHHTTCCCCCTT
T ss_pred             HHHHHhhhhcCCccccCCHHHHHHHHHHHHHhhhhhhcccChh
Confidence            3333     1     1 34566777766666555666666643

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.54  E-value=9.7e-14  Score=136.37  Aligned_cols=138  Identities=25%  Similarity=0.251  Sum_probs=98.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...+|+|+|+|||||||+|+.|++.+.+.| ....+++.|+++.... +                           |...
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g-~~~i~~~~D~~~~~l~-~---------------------------~~~~   53 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNN-IDVIVLGSDLIRESFP-V---------------------------WKEK   53 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEECTHHHHTTSS-S---------------------------CCGG
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCC-CEEEEECchHHHHHHh-h---------------------------hhHH
Confidence            357999999999999999999998865443 2222246555442211 0                           1111


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC---CCCHHHH
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH---GFTLDDI  338 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih---~VpeEvI  338 (535)
                      .+...+......+..+|+. .  .||||+++.....|..+.++|+.+++...+|+|.+ ++++|++|+..   .++.+.+
T Consensus        54 ~e~~~~~~~~~~i~~~l~~-~--~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~-~~e~~~~R~~~R~~~~~~~~l  129 (260)
T 3a4m_A           54 YEEFIKKSTYRLIDSALKN-Y--WVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKA-SLDVLIRRNIERGEKIPNEVI  129 (260)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-S--EEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEEC-CHHHHHHHHHHTTCSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhC-C--EEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHHhCCCCCCHHHH
Confidence            1112222233445566666 6  99999999999999999999999999999999997 89999998764   5688999


Q ss_pred             HHHhhccccCCccc
Q 009432          339 ERMAGQWEEAPTLY  352 (535)
Q Consensus       339 e~M~krfE~~p~~y  352 (535)
                      +.+..+|+.+...|
T Consensus       130 ~~~~~~~e~~~~~~  143 (260)
T 3a4m_A          130 KKMYEKFDEPGKKY  143 (260)
T ss_dssp             HHHHHHCCCTTSSC
T ss_pred             HHHHHHhcCccccC
Confidence            99999998755433

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.45  E-value=3.7e-13  Score=133.11  Aligned_cols=138  Identities=24%  Similarity=0.214  Sum_probs=99.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      +.+|+|+|+|||||||+|+.|++.+   .+  ..+++.|+++.... +...           +..        ..|....
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~---~~--~~~i~~D~~r~~~~-~~~~-----------g~~--------~~~~~~~   56 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKN---PG--FYNINRDDYRQSIM-AHEE-----------RDE--------YKYTKKK   56 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS---TT--EEEECHHHHHHHHT-TSCC-----------CC-----------CCHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhC---CC--cEEecccHHHHHhc-cCCc-----------ccc--------cccchhh
Confidence            4689999999999999999999742   12  35668886554321 1000           000        0122222


Q ss_pred             HHHHHHHHHHHHHHHH---HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc----CCCCH
Q 009432          263 EEAYRSSMLKAFTRTL---DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV----HGFTL  335 (535)
Q Consensus       263 ee~~~q~llk~akkaL---k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi----h~Vpe  335 (535)
                      +....+.+.+.+...|   ..|.  .||+|+++....+|..|.++++++++.+.+|++.+ +.++|++|..    |.++.
T Consensus        57 ~~~~~~~~~~~~~~~l~~~~~g~--~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~  133 (301)
T 1ltq_A           57 EGIVTGMQFDTAKSILYGGDSVK--GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRGTKAVPI  133 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTCC--EEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCC-CHHHHHHHHHHCGGGCCCH
T ss_pred             hhHHHHHHHHHHHHHHhhccCCC--EEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHHHHhccCCCCCH
Confidence            3333444556677778   7888  99999999999999999999999999998999987 7888877654    57889


Q ss_pred             HHHHHHhhccccC
Q 009432          336 DDIERMAGQWEEA  348 (535)
Q Consensus       336 EvIe~M~krfE~~  348 (535)
                      +.|++++++|++.
T Consensus       134 e~i~~~~~~~~~~  146 (301)
T 1ltq_A          134 DVLRSMYKSMREY  146 (301)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.32  E-value=6.7e-12  Score=115.14  Aligned_cols=121  Identities=12%  Similarity=0.110  Sum_probs=79.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ..+.+|+|+|+|||||||+|+.|++.+    + . .+++.|+++.........         . . .       +  |..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l----~-~-~~i~~D~~~~~~~~~~~~---------~-~-~-------~--~~~   56 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL----R-L-PLLSKDAFKEVMFDGLGW---------S-D-R-------E--WSR   56 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH----T-C-CEEEHHHHHHHHHHHHCC---------C-S-H-------H--HHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc----C-C-eEecHHHHHHHHHHhcCc---------c-c-h-------H--HHH
Confidence            356899999999999999999999875    2 2 356777765433211100         0 0 0       0  111


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV  330 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi  330 (535)
                      ......++.+...+...++.|.  .||+|+++.....+..|.++++..+..+.+|+|.+ ++++|++|..
T Consensus        57 ~~~~~~~~~~~~~~~~~l~~g~--~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~-~~e~~~~R~~  123 (193)
T 2rhm_A           57 RVGATAIMMLYHTAATILQSGQ--SLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVA-SGDVLVERIL  123 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEEC-CHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHhCCC--eEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeC-CHHHHHHHHH
Confidence            1222334555556677788898  99999998433344567677777788888999987 7888887753

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=99.30  E-value=1.1e-11  Score=132.04  Aligned_cols=154  Identities=22%  Similarity=0.294  Sum_probs=94.2

Q ss_pred             CCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcc-ccccccccccCCccCCcchhhhhhh
Q 009432          177 RATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEK-VEDSDVSKSSGSLRSKKPVTKMVME  255 (535)
Q Consensus       177 r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~-v~~~~~sk~~g~~r~kk~l~kkv~e  255 (535)
                      +.....+++|+|+|+|||||||+|++|++.+.+. .....+++.|+++...... ..                      .
T Consensus        33 ~~~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~----------------------~   89 (469)
T 1bif_A           33 VCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKS----------------------F   89 (469)
T ss_dssp             -----CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCC----------------------G
T ss_pred             ccCCCCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCc----------------------c
Confidence            4445678899999999999999999999987654 3345666777765543211 00                      0


Q ss_pred             ccCchHHH------HHHHHHHHHHHHHHH--HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH
Q 009432          256 YCYEPEME------EAYRSSMLKAFTRTL--DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA  327 (535)
Q Consensus       256 y~y~~e~e------e~~~q~llk~akkaL--k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~  327 (535)
                      .+|+...+      +.....++..+...+  ..|.  +||+|++|...++|+.|++++++.++.++++++.|.+++.+ .
T Consensus        90 ~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~--~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i-~  166 (469)
T 1bif_A           90 EFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGH--VAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVI-A  166 (469)
T ss_dssp             GGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCS--EEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHH-H
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC--EEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHH-H
Confidence            01111111      111112233345566  5576  99999999999999999999999999999999987555443 4


Q ss_pred             hhcC----------CCCH-HHHHHHhhccccCCccceeec
Q 009432          328 RNVH----------GFTL-DDIERMAGQWEEAPTLYLQLD  356 (535)
Q Consensus       328 RNih----------~Vpe-EvIe~M~krfE~~p~~y~~lD  356 (535)
                      +|+.          .++. +.++.+.+++......|..||
T Consensus       167 ~r~~~~~~~rp~~~~~~~e~~~~~~~~R~~~y~~~ye~l~  206 (469)
T 1bif_A          167 ANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLD  206 (469)
T ss_dssp             HHHHHHTTTSTTTTTSCHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHhhhcCCcccCCCHHHHHHHHHHHHHHhccEeEECC
Confidence            3332          1233 333556555544344444444

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.29  E-value=2.1e-11  Score=122.31  Aligned_cols=144  Identities=14%  Similarity=0.150  Sum_probs=96.8

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE  259 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~  259 (535)
                      ...+.+|||+|+|||||||+|+.|++.+   .+ ...+++.|+++..... .               ..+.....+  +.
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~---~~-~~~~Is~D~~R~~~~~-~---------------~~~~~~~~~--~a   87 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEET---QG-NVIVIDNDTFKQQHPN-F---------------DELVKLYEK--DV   87 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHT---TT-CCEEECTHHHHTTSTT-H---------------HHHHHHHGG--GC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh---CC-CeEEEechHhHHhchh-h---------------HHHHHHccc--hh
Confidence            4467899999999999999999998763   11 2345677666532210 0               000011111  11


Q ss_pred             hHHHHHHHHH-HHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHH----HHhh-----
Q 009432          260 PEMEEAYRSS-MLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGC----AARN-----  329 (535)
Q Consensus       260 ~e~ee~~~q~-llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~c----i~RN-----  329 (535)
                      ......++.. ....+..+++.|.  .||||+++....++.++.+++++.|+.+.++.+.+ ++++|    .+|.     
T Consensus        88 ~~~~~~~~~~~~~~~v~~~l~~g~--~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~-p~~~~~l~~~~Rl~~R~~  164 (287)
T 1gvn_B           88 VKHVTPYSNRMTEAIISRLSDQGY--NLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAV-PKINSYLGTIERYETMYA  164 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC--CEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECC-CHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHhcCC--eEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEEC-CHHHHHHHHHHHHHHHHH
Confidence            1111223333 3345677788898  99999999998889999999999999988888886 78888    7774     


Q ss_pred             -----cCCCCHHHHHHHhhccccC
Q 009432          330 -----VHGFTLDDIERMAGQWEEA  348 (535)
Q Consensus       330 -----ih~VpeEvIe~M~krfE~~  348 (535)
                           .+.++.+.++.+++++...
T Consensus       165 ~g~l~~R~~~~e~~~~i~~rl~~a  188 (287)
T 1gvn_B          165 DDPMTARATPKQAHDIVVKNLPTN  188 (287)
T ss_dssp             HCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             hCCCCCCCCCHHHHHHHHHHHHHH
Confidence                 2367778888887776543

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.25  E-value=1.1e-10  Score=107.72  Aligned_cols=120  Identities=19%  Similarity=0.112  Sum_probs=81.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ....+|+|+|++||||||+|+.|++.+...|+ ...++..|.++. ...+                        +..|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~-~~~~~~~d~~~~-~~~~------------------------~~~~~~   64 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGY-RVEVLDGDWART-TVSE------------------------GAGFTR   64 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEHHHHHT-TTTT------------------------TCCCCH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEeeHHHHHH-HHhh------------------------ccCCCh
Confidence            45689999999999999999999998765443 223444444321 1100                        011222


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                      ......+..+...+...+..|.  +||+|.++.....|..+.++++..+....+|++++ ++++|++|.
T Consensus        65 ~~r~~~~~~~~~~~~~~~~~g~--~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~-~~e~~~~R~  130 (186)
T 2yvu_A           65 EERLRHLKRIAWIARLLARNGV--IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKA-SLEEVIRRD  130 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTC--EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEEC-CHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHhCCC--EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeC-CHHHHHHhh
Confidence            2222222333333444567787  99999999888888889988888888888899997 899999985

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.25  E-value=5.8e-11  Score=107.95  Aligned_cols=129  Identities=18%  Similarity=0.139  Sum_probs=75.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      +.+|+|+|+|||||||+|+.|++.+    +.....++.|+++...........    .|     ..+.. .. ..+....
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l----~~~~~~~~~D~~~~~~~~~~~~~~----~~-----~~~~~-~~-~~~~~~~   67 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDSLIEAMPLKMQSAE----GG-----IEFDA-DG-GVSIGPE   67 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS----SSCEEEEEHHHHHHHSCGGGGTST----TS-----EEECT-TS-CEEECHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc----CCCeEEeccchHhhhcchhhccch----hh-----ccccC-CC-ccccchh
Confidence            3589999999999999999999874    222233466766432211100000    00     00000 00 0011111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCC-CHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNL-RVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~-~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ....+..+...+...++.|.  .||+|+++. ....+..+.++++.  ..+.+|++.+ +.++|.+|...
T Consensus        68 ~~~~~~~~~~~~~~~~~~g~--~vi~~~~~~~~~~~~~~~~~~~~~--~~~~~v~l~~-~~e~l~~R~~~  132 (178)
T 1qhx_A           68 FRALEGAWAEGVVAMARAGA--RIIIDDVFLGGAAAQERWRSFVGD--LDVLWVGVRC-DGAVAEGRETA  132 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC--EEEEEECCTTTHHHHHHHHHHHTT--CCEEEEEEEC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCC--eEEEEeccccChHHHHHHHHHhcC--CcEEEEEEEC-CHHHHHHHHHh
Confidence            12233444455666778888  999999886 45667777777754  4556777776 78999988753

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.20  E-value=9.1e-11  Score=106.88  Aligned_cols=136  Identities=15%  Similarity=0.084  Sum_probs=78.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ++.+|+|+|+|||||||+|+.|++.+    + ...++..+.+ ........        .  .+..       .+.+...
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l----~-~~~i~d~~~~-g~~i~~~~--------~--~g~~-------~~~~~~~   60 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL----P-GSFVFEPEEM-GQALRKLT--------P--GFSG-------DPQEHPM   60 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS----T-TCEECCTHHH-HHHHHHTS--------T--TCCS-------CGGGSTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc----C-CCEEEchhhh-HHHHHHhC--------c--cccc-------hhhhhHH
Confidence            35689999999999999999998764    2 2223121100 00000000        0  0000       0111111


Q ss_pred             HHHHHHHHHHHHHHHHHHc-CCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCHH
Q 009432          262 MEEAYRSSMLKAFTRTLDE-GNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTLD  336 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~-G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~VpeE  336 (535)
                      .    .+.+.+.+...++. |.  +||+|+++...+.+..+++++++.|+.+.+|.+.+ ++++|++|...    ....+
T Consensus        61 ~----~~~~~~~i~~~l~~~g~--~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~-~~e~~~~R~~~R~~r~~~~~  133 (183)
T 2vli_A           61 W----IPLMLDALQYASREAAG--PLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIA-PLNVVLERLRRDGQPQVNVG  133 (183)
T ss_dssp             H----HHHHHHHHHHHHHHCSS--CEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEEC-CHHHHHHHHHTC----CCHH
T ss_pred             H----HHHHHHHHHHHHHhCCC--cEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeC-CHHHHHHHHHhccccchhHH
Confidence            1    11222334455555 66  89999999998889899999988887777788887 78999888654    24567


Q ss_pred             HHHHHhhcccc
Q 009432          337 DIERMAGQWEE  347 (535)
Q Consensus       337 vIe~M~krfE~  347 (535)
                      .++.+++.++.
T Consensus       134 ~~~~~~~~~~~  144 (183)
T 2vli_A          134 TVEDRLNELRG  144 (183)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHhhcc
Confidence            77777766654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.18  E-value=1.7e-10  Score=107.80  Aligned_cols=129  Identities=16%  Similarity=0.084  Sum_probs=84.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      ..+|+|+|++||||||+|+.|++.+    |  ..+++.|+++.......                 +   .....+....
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g--~~~i~~d~~~~~~~~~~-----------------~---~~g~~~~~~~   71 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----G--YPFIEGDALHPPENIRK-----------------M---SEGIPLTDDD   71 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----T--CCEEEGGGGCCHHHHHH-----------------H---HHTCCCCHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----C--CEEEeCCcCcchhhHHH-----------------H---hcCCCCCchh
Confidence            5689999999999999999999875    2  24667787754221000                 0   0011122111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc----CCCCHHHH
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV----HGFTLDDI  338 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi----h~VpeEvI  338 (535)
                      ..    ..+..+...+..|.  .||||+++.....+..+.+++   +..+.+|.+.+ +.++|++|..    +..+.+.+
T Consensus        72 ~~----~~~~~l~~~~~~~~--~vivd~~~~~~~~~~~l~~~~---~~~~~vi~l~~-~~e~~~~Rl~~R~~~~~~~~~~  141 (202)
T 3t61_A           72 RW----PWLAAIGERLASRE--PVVVSCSALKRSYRDKLRESA---PGGLAFVFLHG-SESVLAERMHHRTGHFMPSSLL  141 (202)
T ss_dssp             HH----HHHHHHHHHHTSSS--CCEEECCCCSHHHHHHHHHTS---TTCCEEEEEEC-CHHHHHHHHHHHHSSCCCHHHH
T ss_pred             hH----HHHHHHHHHHhcCC--CEEEECCCCCHHHHHHHHHhc---CCCeEEEEEeC-CHHHHHHHHHHhhccCCCHHHH
Confidence            11    12233445557787  899999999888887766554   45566777876 7888777643    34678888


Q ss_pred             HHHhhcccc
Q 009432          339 ERMAGQWEE  347 (535)
Q Consensus       339 e~M~krfE~  347 (535)
                      ++++..+++
T Consensus       142 ~~~~~~~~~  150 (202)
T 3t61_A          142 QTQLETLED  150 (202)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHhcCC
Confidence            888888875

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.16  E-value=2e-10  Score=112.10  Aligned_cols=123  Identities=17%  Similarity=0.137  Sum_probs=81.0

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhcc--ccccccccccCCccCCcchhhhhhhcc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEK--VEDSDVSKSSGSLRSKKPVTKMVMEYC  257 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~--v~~~~~sk~~g~~r~kk~l~kkv~ey~  257 (535)
                      ...+.+|+|+|+|||||||+|+.|++.+    +....+++.|+++......  +..     ..|..              
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l----~~~~~~~~~D~~r~~~~~~~~i~~-----~~g~~--------------   85 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEF----QGNIVIIDGDSFRSQHPHYLELQQ-----EYGKD--------------   85 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHT----TTCCEEECGGGGGTTSTTHHHHHT-----TCSST--------------
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhc----CCCcEEEecHHHHHhchhHHHHHH-----HcCch--------------
Confidence            4567899999999999999999999864    1123444555543321000  000     00100              


Q ss_pred             CchHHHHH-HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          258 YEPEMEEA-YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       258 y~~e~ee~-~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                       ..+.... ....+...+..+++.|.  .||||+++.....+..+.+++++.|+.+.++.+.+ +.++|.+|.
T Consensus        86 -~~~~~~~~~~~~~~~~~~~~~~~g~--~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~-~~e~~~~R~  154 (253)
T 2p5t_B           86 -SVEYTKDFAGKMVESLVTKLSSLGY--NLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIAT-KPELSYLST  154 (253)
T ss_dssp             -THHHHHHHHHHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHH
T ss_pred             -HHHHhhHHHHHHHHHHHHHHHhcCC--CEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHH
Confidence             0011111 11222344556677887  89999999988889999999999999998888876 889999985

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.12  E-value=5.9e-10  Score=105.32  Aligned_cols=119  Identities=16%  Similarity=0.081  Sum_probs=77.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH-HcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV-ENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~-e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ...+|+|+|++||||||+|+.|.+.+. .. |....+++.|+++ .....                        ...|..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~-g~~~~~~~~d~~r-~~l~~------------------------~~~~~~   77 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDNIR-FGLNK------------------------DLGFSE   77 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHHHT-TTTTT------------------------TCCSSH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccc-CCcEEEECChHHh-hhhcc------------------------ccCCCH
Confidence            456899999999999999999998874 32 2222333333332 11100                        011221


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHh------hcCceEEEEEEecCCHHHHHHhh
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAK------RSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr------~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                      ......+..+...+...++.|.  .||+|..+.....|..+.+++.      ..+.+..+|++++ ++++|.+|.
T Consensus        78 ~~r~~~~~~~~~~~~~~l~~g~--~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~-~~e~~~~R~  149 (211)
T 1m7g_A           78 ADRNENIRRIAEVAKLFADSNS--IAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDV-PVEVAEQRD  149 (211)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEEC-CHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC--EEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeC-CHHHHHHhh
Confidence            2222233344455667788898  9999976655677877878776      4556788899987 899999995

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.12  E-value=3.3e-09  Score=96.41  Aligned_cols=133  Identities=16%  Similarity=0.092  Sum_probs=79.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh-ccccccccccccCCccCCcchhhhhhhccCc
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV-EKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE  259 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~-e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~  259 (535)
                      ....+|+|+|++||||||+++.|...+    |  ..+++.|++..... ...       ..|              +.+.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g--~~~i~~d~~~~~~~~~~~-------~~g--------------~~~~   58 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----H--AAFLDGDFLHPRRNIEKM-------ASG--------------EPLN   58 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----T--CEEEEGGGGCCHHHHHHH-------HTT--------------CCCC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----C--cEEEeCccccchHHHHHh-------hcC--------------cCCC
Confidence            345789999999999999999998764    2  34667777653210 000       000              1111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCH
Q 009432          260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTL  335 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~Vpe  335 (535)
                      ..........+...+...+..|.  .||||.++.....+.    .+++.+..+.+|++++ ++++|++|...    ....
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~--~~vi~~~~~~~~~~~----~l~~~~~~~~vv~l~~-~~e~~~~R~~~R~~~~~~~  131 (175)
T 1knq_A           59 DDDRKPWLQALNDAAFAMQRTNK--VSLIVCSALKKHYRD----LLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKT  131 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCS--EEEEECCCCSHHHHH----HHHTTCTTEEEEEEEC-CHHHHHHHHHTSTTCCCCH
T ss_pred             ccccccHHHHHHHHHHHHHhcCC--cEEEEeCchHHHHHH----HHHhcCCCEEEEEEEC-CHHHHHHHHHhccCCCCch
Confidence            11111112223333455566787  899999887765544    4455555667788886 78999888654    2346


Q ss_pred             HHHHHHhhcccc
Q 009432          336 DDIERMAGQWEE  347 (535)
Q Consensus       336 EvIe~M~krfE~  347 (535)
                      +.++.+...+++
T Consensus       132 ~~~~~~~~~~~~  143 (175)
T 1knq_A          132 QMLVTQFETLQE  143 (175)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHHhhhC
Confidence            667666555543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.09  E-value=1.1e-09  Score=99.78  Aligned_cols=127  Identities=13%  Similarity=0.130  Sum_probs=72.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh--ccCc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME--YCYE  259 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e--y~y~  259 (535)
                      .+.+|+|+|.|||||||+|+.|++.+    +  ..+++.|++++.....-  ..   .+    +  ...++...  ..+.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~----~--~~~i~~d~~~~~~~~~~--~~---~~----~--~~~~~~~~~g~~~~   64 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY----G--YTHLSAGELLRDERKNP--DS---QY----G--ELIEKYIKEGKIVP   64 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHCT--TS---TT----H--HHHHHHHHTTCCCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh----C--CeEEeHHHHHHHHHhcc--CC---hH----H--HHHHHHHHCCCcCC
Confidence            35799999999999999999999865    2  35678888876543210  00   00    0  00111110  0111


Q ss_pred             hHH-HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          260 PEM-EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       260 ~e~-ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                      .+. ....+..+.. ....+..+.  .||+|+.......+..|.+.+......-.+|.+.+ ++++|++|.
T Consensus        65 ~~~~~~~l~~~~~~-~~~~~~~~~--~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~e~~~~R~  131 (196)
T 1tev_A           65 VEITISLLKREMDQ-TMAANAQKN--KFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC-NNEICIERC  131 (196)
T ss_dssp             HHHHHHHHHHHHHH-HHHHCTTCC--EEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-hhccccCCC--eEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEEC-CHHHHHHHH
Confidence            111 1111222111 122233466  89999999988887777776654323335677776 788877764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.08  E-value=1e-09  Score=102.80  Aligned_cols=134  Identities=16%  Similarity=0.115  Sum_probs=81.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ....+|+|+|++||||||+++.|+..+    |  ..+++.|++.......                    +....+.+..
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g--~~~i~~d~~~~~~~~~--------------------~~~~g~~~~~   80 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET----G--LEFAEADAFHSPENIA--------------------TMQRGIPLTD   80 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH----C--CEEEEGGGGSCHHHHH--------------------HHHTTCCCCH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh----C--CeEEcccccccHHHHH--------------------HHhcCCCCCC
Confidence            345689999999999999999999865    2  2455667664321100                    0001122222


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCHH
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTLD  336 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~VpeE  336 (535)
                      .........+...+...+..|.  .+|+|..+.....|..+    ++....+.+|++.+ +.++|++|...    ..+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~g~--~viid~~~~~~~~~~~l----~~~~~~~~vv~l~~-~~e~l~~Rl~~R~~~~~~~~  153 (200)
T 4eun_A           81 EDRWPWLRSLAEWMDARADAGV--STIITCSALKRTYRDVL----REGPPSVDFLHLDG-PAEVIKGRMSKREGHFMPAS  153 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC--CEEEEECCCCHHHHHHH----TTSSSCCEEEEEEC-CHHHHHHHHTTCSCCSSCGG
T ss_pred             cccccHHHHHHHHHHHHHhcCC--CEEEEchhhhHHHHHHH----HHhCCceEEEEEeC-CHHHHHHHHHhcccCCCCHH
Confidence            2211122233334455567787  89999998887666544    33333556777776 78889888654    33456


Q ss_pred             HHHHHhhcccc
Q 009432          337 DIERMAGQWEE  347 (535)
Q Consensus       337 vIe~M~krfE~  347 (535)
                      .++.++..+++
T Consensus       154 ~l~~~~~~~~~  164 (200)
T 4eun_A          154 LLQSQLATLEA  164 (200)
T ss_dssp             GHHHHHHHCCC
T ss_pred             HHHHHHHHhCC
Confidence            77777766664

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.02  E-value=2.1e-09  Score=100.73  Aligned_cols=121  Identities=19%  Similarity=0.131  Sum_probs=78.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ....+|+|+|++||||||+|+.|+..+... |.....+..|++......                         ...|..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~-G~~~~~~d~d~~~~~~~~-------------------------~~~~~~   76 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQK-GKLCYILDGDNVRHGLNR-------------------------DLSFKA   76 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHTTTTTT-------------------------TCCSSH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEecCchhhhHhhc-------------------------ccCcCh
Confidence            456799999999999999999999887532 322123344443321100                         011222


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCC
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHG  332 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~  332 (535)
                      +.....+..+...+...+..|.  .||++..+.....|..+.+++.  +..+.+|++++ ++++|.+|..++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~--~vi~~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a-~~e~~~~R~~~~  143 (200)
T 3uie_A           77 EDRAENIRRVGEVAKLFADAGI--ICIASLISPYRTDRDACRSLLP--EGDFVEVFMDV-PLSVCEARDPKG  143 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHHTSC--TTSEEEEEECC-CHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCc--eEEEecCCchHHHHHHHHHhcC--CCCEEEEEEeC-CHHHHHHhcccc
Confidence            2222223334444555567787  9999999999888888877665  34566788886 899999997543

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.98  E-value=3.8e-09  Score=117.28  Aligned_cols=121  Identities=17%  Similarity=0.183  Sum_probs=83.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ++++|+|+|+|||||||+|+.|++++...| .. .++...|.++.....                        ...|..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G-~~-~v~lDgD~iR~~L~~------------------------~~~fs~~  104 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG-IP-CYTLDGDNIRQGLNK------------------------NLGFSPE  104 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CC-EEEESHHHHTTTTTT------------------------TCCSSHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-Ce-EEEechHHhhhccCc------------------------cccCChh
Confidence            578999999999999999999999875443 22 232222333321110                        0113322


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ........+.+.++..++.|.  +||+|.+......|..+.++++..+.++.+|++++ ++++|++|...
T Consensus       105 dree~~r~i~eva~~~l~~G~--iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Lda-p~Evl~~Rl~r  171 (630)
T 1x6v_B          105 DREENVRRIAEVAKLFADAGL--VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDA-PLHVCEQRDVK  171 (630)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEEC-CHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHHHHHHhCCC--EEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEEC-CHHHHHHHhcc
Confidence            222233344445566678898  99999777777789999999998888889999997 89999999764

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.97  E-value=5.8e-09  Score=114.52  Aligned_cols=124  Identities=19%  Similarity=0.207  Sum_probs=84.0

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE  259 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~  259 (535)
                      ...+++|+|+|+|||||||+|+.|++++...|+....++..|.++. ...+                        +..|.
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~-~l~~------------------------~~~f~  447 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH-ELSS------------------------ELGFT  447 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH-HTCT------------------------TCCCS
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH-Hhcc------------------------ccCCC
Confidence            3567899999999999999999999987654323334545454333 1110                        01122


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCC
Q 009432          260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHG  332 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~  332 (535)
                      ..........+...+...++.|.  +||+|.++.....|..+.++++..| .+.+|++++ ++++|++|..++
T Consensus       448 ~~er~~~i~ri~~v~~~~~~~g~--~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda-~~ev~~~R~~r~  516 (573)
T 1m8p_A          448 REDRHTNIQRIAFVATELTRAGA--AVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVAT-PLEHCEQSDKRG  516 (573)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECC-CHHHHHHHCSSC
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCC--EEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeC-CHHHHHHHhccc
Confidence            21111122334445666778898  9999998888889999888888766 567788886 899999997553

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.95  E-value=1.5e-09  Score=101.22  Aligned_cols=141  Identities=19%  Similarity=0.169  Sum_probs=81.1

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh--hcc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM--EYC  257 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~--ey~  257 (535)
                      ...+++|+|+|+|||||||+|+.|++.+    + . .+++.|++++.......  .    .    + +.+...+.  +..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l----~-~-~~i~~d~~~r~~~~~~~--~----~----g-~~i~~~~~~g~~~   79 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL----G-I-PQISTGELFRRNIEEGT--K----L----G-VEAKRYLDAGDLV   79 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHH----T-C-CEEEHHHHHHHHHHTTC--H----H----H-HHHHHHHHHTCCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh----C-C-cEEehhHHHHHHHHcCC--h----H----H-HHHHHHHHcCCcc
Confidence            4566799999999999999999999875    2 2 36688888765321100  0    0    0 00100000  111


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcC----C
Q 009432          258 YEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVH----G  332 (535)
Q Consensus       258 y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih----~  332 (535)
                      +...    ....+.+.+.. +..|.  .||+|+......++..|.+++...+..+ .+|.+.+ ++++|++|...    .
T Consensus        80 ~~~~----~~~~~~~~~~~-~~~~~--~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~-~~e~~~~Rl~~R~r~~  151 (201)
T 2cdn_A           80 PSDL----TNELVDDRLNN-PDAAN--GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRV-SEEVLLERLKGRGRAD  151 (201)
T ss_dssp             CHHH----HHHHHHHHTTS-GGGTT--CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHHHCCTT
T ss_pred             cHHH----HHHHHHHHHhc-ccCCC--eEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHHcCCCCC
Confidence            1111    11111111111 23465  7899998888888888878787766544 6777877 78888877542    2


Q ss_pred             CCHHHHHHHhhcc
Q 009432          333 FTLDDIERMAGQW  345 (535)
Q Consensus       333 VpeEvIe~M~krf  345 (535)
                      .+.+.+++....|
T Consensus       152 ~~~e~~~~r~~~~  164 (201)
T 2cdn_A          152 DTDDVILNRMKVY  164 (201)
T ss_dssp             CSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            3455555444333

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.91  E-value=6.5e-09  Score=94.59  Aligned_cols=122  Identities=16%  Similarity=0.091  Sum_probs=70.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      .+.+|+|+|.|||||||+|+.|++.+    +  ..+++.|++++.....   +.       . ..+.+..-+....... 
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l----~--~~~i~~d~~~~~~~~~---~~-------~-~~~~i~~~~~~g~~~~-   66 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF----G--WVHLSAGDLLRQEQQS---GS-------K-DGEMIATMIKNGEIVP-   66 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHT---TC-------T-THHHHHHHHHTTCCCC-
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh----C--CeEeeHHHHHHHHHhc---CC-------H-HHHHHHHHHHCCCCCC-
Confidence            35789999999999999999999865    2  3577888877654310   00       0 0011111000000110 


Q ss_pred             HHHHHHHHHHHHHHHHHH--cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          262 MEEAYRSSMLKAFTRTLD--EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk--~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                       ....+..+    ...+.  .|.  .||+|+.......+..|...+......-.+|.+.+ +.++|++|.
T Consensus        67 -~~~~~~~l----~~~i~~~~~~--~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~-~~e~~~~R~  128 (194)
T 1qf9_A           67 -SIVTVKLL----KNAIDANQGK--NFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDC-PEEVMTQRL  128 (194)
T ss_dssp             -HHHHHHHH----HHHHHTSTTC--CEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHH
T ss_pred             -HHHHHHHH----HHHHHhcCCC--CEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEEC-CHHHHHHHH
Confidence             11112222    22222  465  89999988888777777776664322334667776 788877764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.91  E-value=3.2e-09  Score=99.70  Aligned_cols=120  Identities=19%  Similarity=0.196  Sum_probs=74.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      .|+|+|+|||||||+|+.|++.+    +  ..+++.|++++.......          . ..+.+...+....+.+.  .
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~----~--~~~i~~d~~~r~~~~~~~----------~-~~~~~~~~~~~g~~~~~--~   62 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY----E--IPHISTGDMFRAAIKNGT----------E-LGLKAKSFMDQGNLVPD--E   62 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH----C--CCEEEHHHHHHHHHHTTC----------H-HHHHHHHHHHHTCCCCH--H
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CcEeeHHHHHHHHHhcCC----------H-HHHHHHHHHHCCCCCCH--H
Confidence            58899999999999999998764    2  246788888876543100          0 00011110111111111  1


Q ss_pred             HHHHHHHHHHHHHH---HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhc
Q 009432          265 AYRSSMLKAFTRTL---DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNV  330 (535)
Q Consensus       265 ~~~q~llk~akkaL---k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNi  330 (535)
                          .....+...+   ..+.  .+|+|+......++..+.+++...+..+ .+|.+.+ +.++|++|-.
T Consensus        63 ----~~~~~~~~~l~~~~~~~--~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~-~~e~~~~Rl~  125 (216)
T 3fb4_A           63 ----VTIGIVHERLSKDDCQK--GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKV-EQEELMKRLT  125 (216)
T ss_dssp             ----HHHHHHHHHHTSGGGTT--CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcccCCC--cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHHH
Confidence                1112233333   3366  8999998788888888888888777766 6777776 7788877644

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.91  E-value=1.6e-09  Score=101.98  Aligned_cols=120  Identities=18%  Similarity=0.206  Sum_probs=72.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      .|+|+|+|||||||+|+.|++.+    +  ..+++.|++++.......          . ..+.+...+....+.+.  .
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~----~--~~~i~~d~~~r~~~~~~~----------~-~~~~~~~~~~~g~~~~~--~   62 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY----G--IPHISTGDMFRAAMKEET----------P-LGLEAKSYIDKGELVPD--E   62 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS----S--CCEEEHHHHHHHHHHTTC----------H-HHHHHHHHHTTTCCCCH--H
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CcEEeHHHHHHHHHhcCC----------H-HHHHHHHHHHCCCCCCH--H
Confidence            58899999999999999998753    2  346788888876543100          0 00011100001111111  1


Q ss_pred             HHHHHHHHHHHHHH---HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhc
Q 009432          265 AYRSSMLKAFTRTL---DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNV  330 (535)
Q Consensus       265 ~~~q~llk~akkaL---k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNi  330 (535)
                          .+...+...|   ..+.  .+|+|+......++..+.+++...+..+ .+|.+.+ +.++|++|-.
T Consensus        63 ----~~~~~~~~~l~~~~~~~--~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~-~~e~~~~Rl~  125 (216)
T 3dl0_A           63 ----VTIGIVKERLGKDDCER--GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQV-DKDVLMERLT  125 (216)
T ss_dssp             ----HHHHHHHHHHTSGGGTT--CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEEC-CGGGHHHHHH
T ss_pred             ----HHHHHHHHHHhcccccC--CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEEC-CHHHHHHHHH
Confidence                1112223333   3366  8999997788888888888888777765 6777776 6677766543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.88  E-value=6.8e-09  Score=92.13  Aligned_cols=118  Identities=21%  Similarity=0.257  Sum_probs=69.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      ++|+|+|+|||||||+|+.| +.+    |  ..+++.||+++........         .  ...+. ........    
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~----g--~~~i~~~~~~~~~~~~~~~---------~--~~~~~-~~~~~~~~----   58 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER----G--AKVIVMSDVVRKRYSIEAK---------P--GERLM-DFAKRLRE----   58 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT----T--CEEEEHHHHHHHHHHHHC--------------CCHH-HHHHHHHH----
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC----C--CcEEEHhHHHHHHHHhcCC---------C--hhHHH-HHHHHHHh----
Confidence            58999999999999999999 542    2  3466778877754321000         0  00000 00000000    


Q ss_pred             HHHHHHHHHHHHHHH--HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          264 EAYRSSMLKAFTRTL--DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       264 e~~~q~llk~akkaL--k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ..-...+...+...|  ..+.  .||+|+. .....+..+.+++.   ..+.+|.+.+ +.++|++|...
T Consensus        59 ~~~~~~~~~~~~~~l~~~~~~--~vi~dg~-~~~~~~~~l~~~~~---~~~~~i~l~~-~~~~~~~R~~~  121 (179)
T 3lw7_A           59 IYGDGVVARLCVEELGTSNHD--LVVFDGV-RSLAEVEEFKRLLG---DSVYIVAVHS-PPKIRYKRMIE  121 (179)
T ss_dssp             HHCTTHHHHHHHHHHCSCCCS--CEEEECC-CCHHHHHHHHHHHC---SCEEEEEEEC-CHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHHHHHhcCCC--eEEEeCC-CCHHHHHHHHHHhC---CCcEEEEEEC-CHHHHHHHHHh
Confidence            000112233345556  5566  8999997 77777777666553   5567788886 78888887654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.87  E-value=3.4e-08  Score=90.34  Aligned_cols=120  Identities=18%  Similarity=0.213  Sum_probs=70.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...+|+|+|++||||||+++.|++.+... |.....+..|. ++....                     .   ...|...
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~-g~~~i~~d~~~-~~~~~~---------------------~---~~~~~~~   57 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTLDGDN-IRQGLN---------------------K---NLGFSPE   57 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHH-HTTTTT---------------------T---TCCSSHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhC-CCcEEEECChH-HHHHHh---------------------h---ccccccc
Confidence            45789999999999999999999876442 22221122222 111110                     0   0112211


Q ss_pred             HHHHHHHHHHHHHHHHH-HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          262 MEEAYRSSMLKAFTRTL-DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       262 ~ee~~~q~llk~akkaL-k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ........+...+ ..+ +.|.  +++.+..+.....+..+.++++..++.+.+|++++ ++++|++|...
T Consensus        58 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~  124 (179)
T 2pez_A           58 DREENVRRIAEVA-KLFADAGL--VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDA-PLHVCEQRDVK  124 (179)
T ss_dssp             HHHHHHHHHHHHH-HHHHHTTC--EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEEC-CHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHH-HHHHHCCC--EEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeC-CHHHHHHHHhh
Confidence            1111222222222 223 5665  77777666666666667777777787778888887 89999999654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.86  E-value=4.6e-08  Score=89.92  Aligned_cols=130  Identities=19%  Similarity=0.161  Sum_probs=91.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...+++|+|++|||||||++.+..      + . .+++.|.++ ....   ..         .             +...
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~------~-~-~~~~~d~~~-g~~~---~~---------~-------------~~~~   53 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK------P-T-EVISSDFCR-GLMS---DD---------E-------------NDQT   53 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC------G-G-GEEEHHHHH-HHHC---SS---------T-------------TCGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc------C-C-eEEccHHHH-HHhc---Cc---------c-------------cchh
Confidence            467999999999999999998541      2 2 234544332 1111   00         0             0111


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc----CCCCHHH
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV----HGFTLDD  337 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi----h~VpeEv  337 (535)
                      .....+..+...+...+..|.  .+++|+++.....+++++.+|+.+.....++.++. +...|-.||.    +.+++++
T Consensus        54 ~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDE-Pt~~Ld~~~~~R~~~~~~~~v  130 (171)
T 4gp7_A           54 VTGAAFDVLHYIVSKRLQLGK--LTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNL-PEKVCQERNKNRTDRQVEEYV  130 (171)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTC--CEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHTCSSCCCCHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCC--eEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeC-CHHHHHHHHhcccCCCCCHHH
Confidence            122234444445566778888  89999999999999999999999999999999985 5566666655    4789999


Q ss_pred             HHHHhhccccC
Q 009432          338 IERMAGQWEEA  348 (535)
Q Consensus       338 Ie~M~krfE~~  348 (535)
                      |.++..++...
T Consensus       131 i~~~~~~l~~~  141 (171)
T 4gp7_A          131 IRKHTQQMKKS  141 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhhh
Confidence            99888877654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.86  E-value=7.2e-09  Score=95.08  Aligned_cols=121  Identities=18%  Similarity=0.193  Sum_probs=70.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhh--hhccCc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMV--MEYCYE  259 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv--~ey~y~  259 (535)
                      +..+|+|+|.|||||||+|+.|++.+    +  ..+++.|++++.....   +.       ..+ +.+..-+  .+..+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l----~--~~~i~~d~~~~~~~~~---~~-------~~~-~~i~~~~~~g~~~~~   70 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY----G--YTHLSTGDLLRSEVSS---GS-------ARG-KKLSEIMEKGQLVPL   70 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHT---TC-------HHH-HHHHHHHHTTCCCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh----C--CeEEcHHHHHHHHHHc---CC-------hHH-HHHHHHHHcCCcCCH
Confidence            44689999999999999999999875    2  2567888877653210   00       000 0010000  001111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                          ...+..+...+...+..|.  .||+|+......++..|...+..   ...+|.+++ ++++|++|.
T Consensus        71 ----~~~~~~~~~~i~~~~~~~~--~vi~d~~~~~~~~~~~~~~~~~~---~~~vi~l~~-~~e~~~~R~  130 (196)
T 2c95_A           71 ----ETVLDMLRDAMVAKVNTSK--GFLIDGYPREVQQGEEFERRIGQ---PTLLLYVDA-GPETMTQRL  130 (196)
T ss_dssp             ----HHHHHHHHHHHHHHTTTCS--CEEEESCCCSHHHHHHHHHHTCC---CSEEEEEEC-CHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhccccCC--cEEEeCCCCCHHHHHHHHHhcCC---CCEEEEEEC-CHHHHHHHH
Confidence                1223334444555566787  99999976676666655554422   225666766 778877764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.85  E-value=6.5e-09  Score=95.58  Aligned_cols=122  Identities=17%  Similarity=0.143  Sum_probs=70.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh-ccCchH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME-YCYEPE  261 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e-y~y~~e  261 (535)
                      +.+|+|+|+|||||||+|+.|++++    +  ..+++.|++++.....-.          ..+ +.+..-+.. ..+.  
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l----~--~~~i~~d~~~~~~~~~~~----------~~~-~~i~~~~~~g~~~~--   72 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY----G--FTHLSTGELLREELASES----------ERS-KLIRDIMERGDLVP--   72 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHHHHHHTC----------HHH-HHHHHHHHTTCCCC--
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh----C--CeEEcHHHHHHHHHHhCC----------HHH-HHHHHHHHcCCcCC--
Confidence            4589999999999999999999875    2  357788888765431000          000 001000000 0011  


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV  330 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi  330 (535)
                       .......+.+.+...+..|.  .||+|+.......+..|...   .+..-.+|.+++ ++++|++|-.
T Consensus        73 -~~~~~~~~~~~i~~~~~~~~--~vi~dg~~~~~~~~~~l~~~---~~~~~~~i~l~~-~~~~~~~R~~  134 (199)
T 2bwj_A           73 -SGIVLELLKEAMVASLGDTR--GFLIDGYPREVKQGEEFGRR---IGDPQLVICMDC-SADTMTNRLL  134 (199)
T ss_dssp             -HHHHHHHHHHHHHHHTTSCS--CEEEETCCSSHHHHHHHHHH---TCCCSEEEEEEC-CHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhcccccCc--cEEEeCCCCCHHHHHHHHHh---cCCCCEEEEEEC-CHHHHHHHHH
Confidence             11122333344455556677  99999988887776655432   222224666776 7888887754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.83  E-value=7.1e-09  Score=94.73  Aligned_cols=120  Identities=20%  Similarity=0.179  Sum_probs=70.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...+|+|+|.|||||||+|+.|++.+    |  ..+++.|++++.....   +.       ..+ +.+..-+....... 
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l----~--~~~i~~d~~~~~~~~~---~~-------~~~-~~i~~~~~~g~~~~-   64 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL----G--FKKLSTGDILRDHVAR---GT-------PLG-ERVRPIMERGDLVP-   64 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH----T--CEEECHHHHHHHHHHT---TC-------HHH-HHHHHHHHTTCCCC-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh----C--CeEecHHHHHHHHHHc---CC-------hHH-HHHHHHHHcCCcCC-
Confidence            45789999999999999999999865    2  3566888877654211   00       000 00100000000100 


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhh
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARN  329 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RN  329 (535)
                       ..    .+...+...|..    -+|+|+.......+..+..++.+.|+.+ .+|.+.+ ++++|++|-
T Consensus        65 -~~----~~~~~~~~~l~~----~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~-~~e~~~~R~  123 (186)
T 3cm0_A           65 -DD----LILELIREELAE----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEV-PEEELVRRI  123 (186)
T ss_dssp             -HH----HHHHHHHHHCCS----EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEEC-CHHHHHHHH
T ss_pred             -HH----HHHHHHHHHhcC----CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHH
Confidence             01    111223333433    3899998877777777777777777644 6777877 778777653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.82  E-value=9.1e-09  Score=97.40  Aligned_cols=123  Identities=18%  Similarity=0.155  Sum_probs=69.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh-c-cCch
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME-Y-CYEP  260 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e-y-~y~~  260 (535)
                      .++|+|+|+|||||||+|+.|++.+    +  ..+++.||+++....+..  .    .    + +.+ ++... . .+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l----~--~~~i~~d~~~~~~~~~~~--~----~----g-~~i-~~~~~~g~~~~~   65 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERF----H--AAHLATGDMLRSQIAKGT--Q----L----G-LEA-KKIMDQGGLVSD   65 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHTTC--H----H----H-HHH-HHHHHTTCCCCH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc----C--ceEEehhHHHHHHHHcCC--h----H----H-HHH-HHHHHCCCcCCH
Confidence            4689999999999999999999875    2  357788888775421100  0    0    0 000 00000 0 0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhh
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARN  329 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RN  329 (535)
                         ......+...+......|.  .+|+|+......++..+.+++...+..+ .+|.+.+ +.++|++|-
T Consensus        66 ---~~~~~~l~~~l~~~~~~~~--~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~-~~e~~~~R~  129 (220)
T 1aky_A           66 ---DIMVNMIKDELTNNPACKN--GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV-DDELLVARI  129 (220)
T ss_dssp             ---HHHHHHHHHHHHHCGGGGS--CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC-CHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhccccCC--CeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHH
Confidence               1111112121111112455  7899985445666666666666666555 6777876 788888774

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.79  E-value=1.3e-08  Score=97.32  Aligned_cols=120  Identities=13%  Similarity=0.201  Sum_probs=70.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      ++|+|+|+|||||||+|+.|++.+    +  ..+++.||+++....+   +.   ..    + +.+..-+....+.+.  
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~l----g--~~~i~~dd~~r~~~~~---~~---~~----g-~~i~~~~~~g~~~~~--   61 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKY----S--LAHIESGGIFREHIGG---GT---EL----G-KKAKEFIDRGDLVPD--   61 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH----T--CEEEEHHHHHHHHTTT---TC---HH----H-HHHHHHHTTTCCCCH--
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh----C--CeEEchHHHHHHHHHc---CC---HH----H-HHHHHHHHcCCcCcH--
Confidence            379999999999999999999875    2  3577888887764211   00   00    0 001000000001100  


Q ss_pred             HHHHHHHHHHHHHHHHc--CCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhh
Q 009432          264 EAYRSSMLKAFTRTLDE--GNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARN  329 (535)
Q Consensus       264 e~~~q~llk~akkaLk~--G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RN  329 (535)
                          +.+...+...|..  |.  .||+|+......++..+.++++..+..+ .+|.+.+ ++++|++|-
T Consensus        62 ----~~~~~~i~~~l~~~~g~--~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~-~~e~~~~Rl  123 (223)
T 2xb4_A           62 ----DITIPMVLETLESKGKD--GWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILL-PREVAKNRI  123 (223)
T ss_dssp             ----HHHHHHHHHHHHHHCTT--CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhcccCC--eEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHH
Confidence                1222334445555  87  8999986555566666666655556433 5677776 778888774

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.77  E-value=2.2e-08  Score=97.44  Aligned_cols=124  Identities=15%  Similarity=0.072  Sum_probs=74.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ..+++|+|+|.|||||||+|+.|++.+    +  ..+++.|++.+.....   ..       . ..+.+.+.+....+.+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~----g--~~~is~~~~~r~~~~~---~~-------~-~g~~i~~~~~~g~~~~   89 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH----C--YCHLSTGDLLREAAEK---KT-------E-LGLKIKNIINEGKLVD   89 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHTTS---SS-------H-HHHHHHHHHHTTCCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh----C--CeEEecHHHHHHHHhc---cc-------h-HHHHHHHHHhcCCCCc
Confidence            467899999999999999999999765    2  3577888888765321   00       0 0011111111111111


Q ss_pred             HHHHHHHHHHHHHHHHHHH---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhc
Q 009432          261 EMEEAYRSSMLKAFTRTLD---EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNV  330 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk---~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNi  330 (535)
                      .  +    .+...+...|.   .+.  .+|+|+......+...|.+++...+..+ .+|.+.+ +.++|++|-.
T Consensus        90 ~--~----~~~~~~~~~l~~~~~~~--~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~-p~e~~~~Rl~  154 (243)
T 3tlx_A           90 D--Q----MVLSLVDEKLKTPQCKK--GFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNV-PDEVLVNRIS  154 (243)
T ss_dssp             H--H----HHHHHHHHHTTSGGGSS--EEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHH
T ss_pred             H--H----HHHHHHHHHHhcccccC--CEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeC-CHHHHHHHHH
Confidence            1  1    11222333333   366  8999996667777777777777666654 5677776 6777777643

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.74  E-value=4.5e-08  Score=95.97  Aligned_cols=126  Identities=13%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhc--cc-cccccccccCCccCCcchhhh--hhhccC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVE--KV-EDSDVSKSSGSLRSKKPVTKM--VMEYCY  258 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e--~v-~~~~~sk~~g~~r~kk~l~kk--v~ey~y  258 (535)
                      .+|+|+|++||||||||+.|++.+    +  ..+++.|++.....-  .. ...... ..+..   .-+...  ..+..|
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~----~--~~~i~~D~~~~~~~~~~~t~~~~~~e-~~~~~---~~~~~~~~~~~~~~   71 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET----G--WPVVALDRVQCCPQIATGSGRPLESE-LQSTR---RIYLDSRPLTEGIL   71 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH----C--CCEEECCSGGGCGGGTTTTTCCCGGG-GTTCC---EECSCCCCGGGCSC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC----C--CeEEeccHHhccCCCccccCCCCHHH-HhCCC---eEEEeeeccccccc
Confidence            489999999999999999999875    2  246788987422110  00 000000 00000   000000  000012


Q ss_pred             chHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhh----cCceEEEEEEecCCHHHHHHhhc
Q 009432          259 EPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKR----SGYEVYILEATYKDPAGCAARNV  330 (535)
Q Consensus       259 ~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~----~G~~V~vIe~~~~d~e~ci~RNi  330 (535)
                      .   ...+.+.+...+ +.+..|.  .||+++...  .   .+..+++.    .++.+.++.+.++..++|.+|..
T Consensus        72 ~---~~~f~~~~~~~i-~~~~~g~--~vIl~gg~~--~---~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~  136 (253)
T 2ze6_A           72 D---AESAHRRLIFEV-DWRKSEE--GLILEGGSI--S---LLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAK  136 (253)
T ss_dssp             C---HHHHHHHHHHHH-HTTTTSS--EEEEEECCH--H---HHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHH-HHHhCCC--CeEEeccHH--H---HHHHHHhcccccccCceEEEEecchhHHHHHHHHH
Confidence            1   122333333444 5567787  777775432  1   23345555    67888888888744477777654

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.74  E-value=3.5e-08  Score=107.73  Aligned_cols=119  Identities=18%  Similarity=0.169  Sum_probs=79.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...+|+|+|++||||||+|+.|++.+...| ....++..|.+ +....+                        +..|...
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G-~~~~~ld~D~i-r~~l~~------------------------~~~f~~~  424 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARG-RKVTLLDGDVV-RTHLSR------------------------GLGFSKE  424 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEECHHHH-HHHTCT------------------------TCCSSHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcC-CeEEEECchHh-hhhhcc------------------------cccccHH
Confidence            467899999999999999999999875543 33345454443 222111                        0012211


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ........+...+...++.|.  .||+|.++.....|..+.+++++.  .+.+|.+.+ +.++|++|..+
T Consensus       425 er~~~l~~i~~~~~~~l~~G~--~VI~d~~~~~~~~r~~~~~~l~~~--d~~vV~L~~-~~e~~~~Rl~r  489 (546)
T 2gks_A          425 DRITNILRVGFVASEIVKHNG--VVICALVSPYRSARNQVRNMMEEG--KFIEVFVDA-PVEVCEERDVK  489 (546)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHTTSCTT--CEEEEEEEC-CGGGHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHHHhCCC--EEEEEcCCCCHHHHHHHHHHhhcC--CEEEEEEeC-CHHHHHHHhhc
Confidence            111122344445666778898  999999999988888888777653  356677776 78999999754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.73  E-value=1.7e-07  Score=85.39  Aligned_cols=141  Identities=18%  Similarity=0.173  Sum_probs=72.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      ++|+|+|.+||||||+|+.|++.+...|  . .+++.|+.......                 +.+.+-+....+.....
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g--~-~~i~~d~~~~~~~~-----------------~~i~~~~~~g~~~~~~~   60 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKG--Y-FVSLYREPGGTKVG-----------------EVLREILLTEELDERTE   60 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTT--C-CEEEEESSCSSHHH-----------------HHHHHHHHHSCCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCC--C-eEEEEeCCCCCchH-----------------HHHHHHHcCCCCCHHHH
Confidence            3799999999999999999998764433  2 24454431110000                 00100000011221111


Q ss_pred             -----HHHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHH
Q 009432          264 -----EAYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCA  326 (535)
Q Consensus       264 -----e~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci  326 (535)
                           ...++.+.+.+...++.|.  .||+|.            ..........+..+++.....-.+|.+.+ ++++|+
T Consensus        61 ~~~~~~~~~~~l~~~i~~~l~~~~--~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~-~~e~~~  137 (195)
T 2pbr_A           61 LLLFEASRSKLIEEKIIPDLKRDK--VVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDI-PVDIAL  137 (195)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHTTC--EEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC--EEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeC-CHHHHH
Confidence                 1112333344556678888  999994            22333333333333332112335677776 788888


Q ss_pred             HhhcC--CC-CHHHHHHHhhcccc
Q 009432          327 ARNVH--GF-TLDDIERMAGQWEE  347 (535)
Q Consensus       327 ~RNih--~V-peEvIe~M~krfE~  347 (535)
                      +|-..  .. ..+.++++...|+.
T Consensus       138 ~Rl~~r~~~~~~~~~~~~~~~~~~  161 (195)
T 2pbr_A          138 RRLKEKNRFENKEFLEKVRKGFLE  161 (195)
T ss_dssp             HHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             HHhhccCccchHHHHHHHHHHHHH
Confidence            87543  12 45666666655554

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.72  E-value=4.8e-08  Score=90.75  Aligned_cols=125  Identities=16%  Similarity=0.109  Sum_probs=69.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-hccCc
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-EYCYE  259 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-ey~y~  259 (535)
                      ....+|+|+|.|||||||+|+.|++.+    |  ..+++.|++++......  ..       ..+ + ..++.. ...+.
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~----g--~~~i~~d~~~~~~~~~~--~~-------~~~-~-~i~~~~~~g~~~   75 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY----S--FVHLSAGDLLRAEQGRA--GS-------QYG-E-LIKNCIKEGQIV   75 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS----S--CEEEEHHHHHHHHHHST--TC-------SCH-H-HHHHHHHTTCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc----C--ceEEeHHHHHHHHHhcc--CC-------HHH-H-HHHHHHHcCCcC
Confidence            456799999999999999999999763    2  35678888776542100  00       000 0 111110 00111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                      +  ....+..+.+.+...+..|. ..+|+|+..........|...+..   .-.+|.+.+ +.++|++|-
T Consensus        76 ~--~~~~~~~l~~~i~~~l~~g~-~~~i~dg~~~~~~~~~~~~~~~~~---~~~~i~l~~-~~e~~~~Rl  138 (203)
T 1ukz_A           76 P--QEITLALLRNAISDNVKANK-HKFLIDGFPRKMDQAISFERDIVE---SKFILFFDC-PEDIMLERL  138 (203)
T ss_dssp             C--HHHHHHHHHHHHHHHHHTTC-CEEEEETCCCSHHHHHHHHHHTCC---CSEEEEEEC-CHHHHHHHH
T ss_pred             C--HHHHHHHHHHHHHhhhccCC-CeEEEeCCCCCHHHHHHHHHhcCC---CCEEEEEEC-CHHHHHHHH
Confidence            1  11223344445566677773 278999876666655544433322   224566666 677776653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.70  E-value=8.1e-08  Score=91.14  Aligned_cols=118  Identities=17%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhh-h-ccCchH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVM-E-YCYEPE  261 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~-e-y~y~~e  261 (535)
                      ++|+|+|+|||||||+|+.|++.+    +  ..+++.|++++....+..      ..    + +.+ ++.+ . ..+..+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l----~--~~~i~~d~li~~~~~~~t------~~----g-~~i-~~~~~~g~~~~~~   67 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY----G--LAHLSTGDMLREAIKNGT------KI----G-LEA-KSIIESGNFVGDE   67 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHTC--------C----C-HHH-HHHHHHTCCCCHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh----C--ceEEehhHHHHHHHHcCC------HH----H-HHH-HHHHHCCCcCCHH
Confidence            579999999999999999999875    2  357788888875432100      00    0 111 1111 0 011111


Q ss_pred             HHHHHHHHHHHHHHHHHH---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCce-EEEEEEecCCHHHHHHhh
Q 009432          262 MEEAYRSSMLKAFTRTLD---EGNFTIVIVDDRNLRVADFAQFWATAKRSGYE-VYILEATYKDPAGCAARN  329 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk---~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~-V~vIe~~~~d~e~ci~RN  329 (535)
                      .       ..+.+...|.   .|.  .||+|+......+...+.+++...+.. ..+|.+.+ +.++|++|-
T Consensus        68 ~-------~~~~i~~~l~~~~~~~--~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~-~~e~~~~Rl  129 (217)
T 3be4_A           68 I-------VLGLVKEKFDLGVCVN--GFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEI-DDSEIIERI  129 (217)
T ss_dssp             H-------HHHHHHHHHHTTTTTT--CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC-CHHHHHHHH
T ss_pred             H-------HHHHHHHHHhccccCC--CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHH
Confidence            1       1122223333   376  799998655555555555555555543 36777776 788887774

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.62  E-value=2.1e-07  Score=90.47  Aligned_cols=126  Identities=17%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      .++.+|+|.|+|||||+|.|+.|++.+    +  ...+|.+|++|.+...-  .        ..+ +.+...+......+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~----g--~~hIstGdllR~~i~~~--t--------~lg-~~~~~~~~~G~lVp   89 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF----H--FNHLSSGDLLRAEVQSG--S--------PKG-KELKAMMERGELVP   89 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH----C--CEEECHHHHHHHHHTTC--C--------HHH-HHHHHHHHHTCCCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH----C--CceEcHHHHHHHHHHcC--C--------chH-HHHHHHHhcCCCCC
Confidence            466789999999999999999999875    2  35668999998764310  0        001 11110000111111


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                        .+.+...+.+.+.+......  -+|+|+-=-+..+...|.+..   .-...+|.+.+ +.+++++|-..
T Consensus        90 --de~~~~lv~~~l~~~~~~~~--g~ilDGfPRt~~Qa~~l~~~~---~~~~~vi~l~v-~~e~~~~Rl~~  152 (217)
T 3umf_A           90 --LEVVLALLKEAMIKLVDKNC--HFLIDGYPRELDQGIKFEKEV---CPCLCVINFDV-SEEVMRKRLLK  152 (217)
T ss_dssp             --HHHHHHHHHHHHHHHTTTCS--EEEEETBCSSHHHHHHHHHHT---CCCSEEEEEEC-CHHHHHHHHSC
T ss_pred             --HHHHHHHHHHHHhhcccccc--CcccccCCCcHHHHHHHHHhC---CccCEEEeccC-CHHHHHHHHhc
Confidence              11122222233333333344  789999544455444433322   22235677777 77888887544

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.61  E-value=5.7e-07  Score=82.71  Aligned_cols=117  Identities=15%  Similarity=0.019  Sum_probs=68.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      .+|+|+|++||||||+++.|+...   +|  ...++.|++......+.                 +    .++... ...
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~---~g--~~~i~~d~~~~~~~~~~-----------------~----~~~~~~-~~~   55 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQL---DN--SAYIEGDIINHMVVGGY-----------------R----PPWESD-ELL   55 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS---SS--EEEEEHHHHHTTCCTTC-----------------C----CGGGCH-HHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhccc---CC--eEEEcccchhhhhcccc-----------------c----cCccch-hHH
Confidence            589999999999999999998631   22  13344444432110000                 0    000000 011


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHh--hcCceEEEEEEecCCHHHHHHhhcC
Q 009432          264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAK--RSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr--~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ..+++.+...+...+..+.  .+|+|.+. ....++.+.++++  ..+..+.++.+.+ +++++++|...
T Consensus        56 ~~~~~~l~~~~~~~~~~~~--~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~-~~e~l~~R~~~  121 (189)
T 2bdt_A           56 ALTWKNITDLTVNFLLAQN--DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWT-NREELLRRDAL  121 (189)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEEC-CHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhcCC--cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeC-CHHHHHHHHHh
Confidence            1233344444455566777  89999864 5566666777654  3445676777775 88898888654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.60  E-value=3.3e-07  Score=100.28  Aligned_cols=121  Identities=17%  Similarity=0.177  Sum_probs=66.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...+|+|+|++|||||||++.|+..+...+|....++..|++......         ..+                |...
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~---------~l~----------------f~~~  422 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS---------ELG----------------FSKA  422 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTS---------SCC----------------CSHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhcc---------ccC----------------CCHH
Confidence            557999999999999999999999875443322223444443321100         001                2211


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ........+...+......+.  +||..........+..+.++++..| .+.+|++.+ +.++|.+|..+
T Consensus       423 ~r~~~~r~i~~v~q~l~~~~~--ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~-~~e~~~~R~~r  488 (552)
T 3cr8_A          423 HRDVNVRRIGFVASEITKNRG--IAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVAT-PIETCESRDRK  488 (552)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC--EEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCC--EEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcC-CHHHHHHhccc
Confidence            111112222223333445666  8888776656778888889998888 677888886 78999998643

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.56  E-value=1.4e-07  Score=90.48  Aligned_cols=120  Identities=19%  Similarity=0.177  Sum_probs=74.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      ++|||.|+|||||+|.|+.|++++    |  ...+|.+|++|......  .        ..+ +.+...+......++  
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~----g--~~~istGdllR~~i~~~--t--------~lg-~~~~~~~~~G~lvpd--   61 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEK----G--FVHISTGDILREAVQKG--T--------PLG-KKAKEYMERGELVPD--   61 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHHT--C--------HHH-HHHHHHHHHTCCCCH--
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH----C--CeEEcHHHHHHHHHHhc--C--------hhh-hhHHHHHhcCCcCCH--
Confidence            478999999999999999999875    2  34668899988764310  0        000 001000011111111  


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhh
Q 009432          264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARN  329 (535)
Q Consensus       264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RN  329 (535)
                          +.+...+...|....  -+|+|+---+..+...|..+....+..+ .+|.+.+ +.+++++|-
T Consensus        62 ----~iv~~lv~~~l~~~~--~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v-~~e~l~~Rl  121 (206)
T 3sr0_A           62 ----DLIIALIEEVFPKHG--NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEV-PDEVVIERL  121 (206)
T ss_dssp             ----HHHHHHHHHHCCSSS--CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHH
T ss_pred             ----HHHHHHHHHhhccCC--ceEecCCchhHHHHHHHHhhHHHhccccceeeecCC-CHHHHHHHH
Confidence                112334455565555  6899997777778777777778888766 6777777 667766653

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.55  E-value=3.1e-07  Score=82.11  Aligned_cols=23  Identities=35%  Similarity=0.199  Sum_probs=21.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +|+|+|+|||||||+|+.|++.+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999999875

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.51  E-value=6.4e-07  Score=82.71  Aligned_cols=26  Identities=38%  Similarity=0.547  Sum_probs=23.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..+|+|+|+|||||||+|+.|++.+
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l   28 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWI   28 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35799999999999999999999876

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.50  E-value=2.8e-07  Score=83.69  Aligned_cols=41  Identities=24%  Similarity=0.463  Sum_probs=30.3

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      .+|+|+|+|||||||+|+.|++.+... |....+++.|++..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~~~~~~~~~   42 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKIINYGDFML   42 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEEEHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEEECChHHH
Confidence            479999999999999999999987533 22334445566554

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.50  E-value=1.8e-07  Score=89.64  Aligned_cols=119  Identities=18%  Similarity=0.108  Sum_probs=66.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc--cCch
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY--CYEP  260 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey--~y~~  260 (535)
                      .+.|+|.|.|||||||+|+.|++.+    +  ..+++.||+++....+-  ..    .    + +.+ +++...  .+..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l----~--~~~i~~d~li~~~~~~~--~~----~----g-~~i-~~~~~~g~~~~~   77 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNF----C--VCHLATGDMLRAMVASG--SE----L----G-KKL-KATMDAGKLVSD   77 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHHHHHHT--CH----H----H-HHH-HHHHHTTCCCCH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----C--CceecHHHHHHHHHHcC--Ch----h----H-HHH-HHHHHCCCcCCH
Confidence            4589999999999999999999875    2  35678888876542210  00    0    0 000 111100  0111


Q ss_pred             HHHHHHHHHHHHHHHHHHH---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCc-eEEEEEEecCCHHHHHHhh
Q 009432          261 EMEEAYRSSMLKAFTRTLD---EGNFTIVIVDDRNLRVADFAQFWATAKRSGY-EVYILEATYKDPAGCAARN  329 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk---~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~-~V~vIe~~~~d~e~ci~RN  329 (535)
                      +       .+...+...|.   .|.  .+|+|+......+...+.+++...+. .-.+|.+++ +.++|++|-
T Consensus        78 ~-------~~~~~i~~~l~~~~~~~--g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~-~~e~~~~Rl  140 (233)
T 1ak2_A           78 E-------MVLELIEKNLETPPCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSI-PDSLLIRRI  140 (233)
T ss_dssp             H-------HHHHHHHHHHTSGGGTT--CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC-CHHHHHHHH
T ss_pred             H-------HHHHHHHHHHhcccccC--cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEEC-CHHHHHHHH
Confidence            1       11122233333   244  68899854455666666666654443 336777776 778887774

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.47  E-value=6.2e-07  Score=86.82  Aligned_cols=122  Identities=16%  Similarity=0.163  Sum_probs=67.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhcc---
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYC---  257 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~---  257 (535)
                      ....+|++.|++||||||+++.|++.+.. +.   .++...     .-.+                ..+-+.+.++.   
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~---~~~~~~-----~p~~----------------~~~g~~i~~~~~~~   78 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DY---DVIMTR-----EPGG----------------VPTGEEIRKIVLEG   78 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TS---CEEEEC-----TTTT----------------CHHHHHHHHHTTC-
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CC---Cceeec-----CCCC----------------CchHHHHHHHHhCC
Confidence            35679999999999999999999988643 21   122111     0000                00111111111   


Q ss_pred             --CchHHHHHHH-----HHHHHHHHHHHHcCCceEEEEe----------C--CCCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432          258 --YEPEMEEAYR-----SSMLKAFTRTLDEGNFTIVIVD----------D--RNLRVADFAQFWATAKRSGYEVYILEAT  318 (535)
Q Consensus       258 --y~~e~ee~~~-----q~llk~akkaLk~G~f~~VIVD----------a--TN~~~~~R~~f~~LAr~~G~~V~vIe~~  318 (535)
                        +.+......+     +.+.+.+..+|+.|.  .||+|          +  .......+..+.+++...-.+-.+|.+.
T Consensus        79 ~~~~~~~~~ll~~a~r~~~~~~~i~~~l~~g~--~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~  156 (229)
T 4eaq_A           79 NDMDIRTEAMLFAASRREHLVLKVIPALKEGK--VVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLN  156 (229)
T ss_dssp             --CCHHHHHHHHHHHHHHHCCCCCHHHHHTTC--EEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEe
Confidence              1211111111     111112345678898  99999          4  3566666666666665444444677777


Q ss_pred             cCCHHHHHHhhc
Q 009432          319 YKDPAGCAARNV  330 (535)
Q Consensus       319 ~~d~e~ci~RNi  330 (535)
                      + ++++|++|-.
T Consensus       157 ~-~~e~~~~R~~  167 (229)
T 4eaq_A          157 V-SAEVGRERII  167 (229)
T ss_dssp             C-CHHHHHHHHH
T ss_pred             C-CHHHHHHHHH
Confidence            6 7888887743

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.47  E-value=4e-07  Score=83.16  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=30.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ..+|+|+|+|||||||+|+.|++.+    +  ..+++.|+++..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l----~--~~~i~~d~~~~~   42 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT----K--RILYDSDKEIEK   42 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH----C--CCEEEHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh----C--CCEEEChHHHHH
Confidence            3478999999999999999999875    2  246677877554

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.46  E-value=2e-07  Score=88.76  Aligned_cols=40  Identities=20%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .+.+|+|+|+|||||||+|+.|++.+    +  ..+++.|++++..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l----~--~~~i~~d~~~~~~   45 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF----E--LKHLSSGDLLRDN   45 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS----S--SEEEEHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc----C--CeEEechHHHHHh
Confidence            34689999999999999999999764    2  3567888887754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.45  E-value=1.3e-07  Score=88.31  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ..+|+|+|+|||||||+|+.|++.+    + . .+++.|+++..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l----~-~-~~i~~d~~~~~   62 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKL----N-V-PFIDLDWYIEE   62 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH----T-C-CEEEHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc----C-C-CEEcchHHHHH
Confidence            3489999999999999999999876    2 2 35577776543

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.44  E-value=1.6e-07  Score=85.33  Aligned_cols=44  Identities=16%  Similarity=0.315  Sum_probs=32.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ..+|+|+|+|||||||+|+.|++.+...| ....+++.|++++..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~i~~~~~~r~~   46 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG-VNYKMVSFGSVMFEV   46 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTT-CCCEEEEHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcC-cceEEEehHHHHHHH
Confidence            35899999999999999999998764322 113566777776643

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.42  E-value=2.5e-07  Score=84.66  Aligned_cols=37  Identities=35%  Similarity=0.451  Sum_probs=30.1

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +|+|+|+|||||||+|+.|++++    |  ..+++.|++++..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l----g--~~~id~D~~~~~~   40 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKAL----G--VGLLDTDVAIEQR   40 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH----T--CCEEEHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc----C--CCEEeCchHHHHH
Confidence            58999999999999999999875    2  2467888876643

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.38  E-value=1.5e-06  Score=80.58  Aligned_cols=28  Identities=32%  Similarity=0.364  Sum_probs=24.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .+.+|+|+|.|||||||+|+.|++.+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999987643

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.34  E-value=1.3e-06  Score=81.03  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=25.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .++.+|+|+|+|||||||+|+.|++.+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~   35 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCA   35 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45679999999999999999999988744

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.31  E-value=1.6e-06  Score=81.79  Aligned_cols=37  Identities=30%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .|+|+|.|||||||+|+.|++.+    +  ..+++.||+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~----g--~~~i~~d~~~r~~   38 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY----G--IPQISTGDMLRAA   38 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH----C--CCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CeEEeHHHHHHHH
Confidence            58999999999999999999865    2  2466888888764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.31  E-value=1.4e-06  Score=78.37  Aligned_cols=36  Identities=19%  Similarity=0.322  Sum_probs=29.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      +|+|+|.|||||||+|+.|++.+    |  ..+++.|+++..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l----g--~~~id~d~~~~~   39 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARAL----G--YEFVDTDIFMQH   39 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh----C--CcEEcccHHHHH
Confidence            69999999999999999999875    2  356688877654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.29  E-value=1.2e-06  Score=82.80  Aligned_cols=39  Identities=21%  Similarity=0.340  Sum_probs=31.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .+++|+|+|+|||||||+|+.|++.+    +  ...++.|++++.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l----~--~~~i~~d~~~~~   42 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY----Q--LAHISAGDLLRA   42 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH----C--CEECCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh----C--CceecHHHHHHH
Confidence            34689999999999999999999875    2  245677887765

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.29  E-value=2e-05  Score=75.77  Aligned_cols=143  Identities=16%  Similarity=0.102  Sum_probs=78.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc---cC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY---CY  258 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey---~y  258 (535)
                      ..++|++.|++||||||+++.|.+.+...| ..+ ++.     +....       + ..|     +.+.+-+...   .+
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~v-~~~-----~~p~~-------~-~~g-----~~i~~~l~~~~~~~~   64 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERG-IEV-QLT-----REPGG-------T-PLA-----ERIRELLLAPSDEPM   64 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTT-CCE-EEE-----ESSCS-------S-HHH-----HHHHHHHHSCCSSCC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCc-ccc-----cCCCC-------C-HHH-----HHHHHHHhcCCCCCC
Confidence            467999999999999999999999886543 221 211     10000       0 000     0000000000   11


Q ss_pred             chHHHH-----HHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEEEecCC
Q 009432          259 EPEMEE-----AYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILEATYKD  321 (535)
Q Consensus       259 ~~e~ee-----~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d  321 (535)
                      .+..+.     ..++.+.+.++.+|+.|.  +||+|-            ..........+..++...-.+-.+|.+++ +
T Consensus        65 ~~~~~~llf~a~R~~~~~~~i~p~l~~g~--~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~-~  141 (213)
T 4edh_A           65 AADTELLLMFAARAQHLAGVIRPALARGA--VVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDL-P  141 (213)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTHHHHHHTTC--EEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC-C
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeC-C
Confidence            111111     122334445677889998  999994            22334555555555544444557788887 7


Q ss_pred             HHHHHHhhcCC--------CCHHHHHHHhhcccc
Q 009432          322 PAGCAARNVHG--------FTLDDIERMAGQWEE  347 (535)
Q Consensus       322 ~e~ci~RNih~--------VpeEvIe~M~krfE~  347 (535)
                      ++++++|-...        .+.+.+++..+.|+.
T Consensus       142 ~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~  175 (213)
T 4edh_A          142 VEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQ  175 (213)
T ss_dssp             HHHHHHHHCCCSSCCTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcCcccccHHHHHHHHHHHHHH
Confidence            89888875431        134566666666653

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.28  E-value=6.4e-07  Score=80.38  Aligned_cols=36  Identities=25%  Similarity=0.257  Sum_probs=29.1

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .|+|+|.|||||||+|+.|++.+    +  ..+++.|++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l----~--~~~i~~d~~~~~   37 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL----N--IPFYDVDEEVQK   37 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH----T--CCEEEHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh----C--CCEEECcHHHHH
Confidence            69999999999999999999875    2  246677877654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.26  E-value=3e-06  Score=84.34  Aligned_cols=40  Identities=30%  Similarity=0.414  Sum_probs=31.8

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ...+.+|+|+|.+||||||+|+.|++ +    |  ..+++.|++.+.
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La~-l----g--~~~id~D~~~~~  111 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLKN-L----G--AYIIDSDHLGHR  111 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHHH-H----T--CEEEEHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH-C----C--CcEEehhHHHHH
Confidence            45678999999999999999999994 2    2  357788887543

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.25  E-value=1.4e-07  Score=88.52  Aligned_cols=28  Identities=18%  Similarity=0.167  Sum_probs=24.5

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +....+|+|+|+|||||||+++.|++.+
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            4566789999999999999999998763

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.19  E-value=2.5e-06  Score=80.95  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=34.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ....+|.|+|.+||||||+|+.|++.+    |  ..+++.|++.+..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~l----g--~~vid~D~~~~~~   50 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKY----G--AHVVNVDRIGHEV   50 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhc----C--CEEEECcHHHHHH
Confidence            457899999999999999999999864    2  4678999997654

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.18  E-value=3.8e-05  Score=75.34  Aligned_cols=140  Identities=18%  Similarity=0.139  Sum_probs=75.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc-----
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY-----  256 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey-----  256 (535)
                      +..+|++.|++||||||+++.|.+.+...+ ....++.     +... +                ..+-+.+.++     
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~-~~~~~~~-----rep~-~----------------t~~g~~ir~~l~~~~   82 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNG-IDHITRT-----REPG-G----------------TLLAEKLRALVKEEH   82 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTT-CCCEEEE-----ESSC-S----------------SHHHHHHHHHHHSCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcC-CCeeeee-----cCCC-C----------------CHHHHHHHHHHhhCC
Confidence            457999999999999999999999886543 2212211     1100 0                0000111111     


Q ss_pred             ---cCchHHHH-----HHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEE
Q 009432          257 ---CYEPEMEE-----AYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILE  316 (535)
Q Consensus       257 ---~y~~e~ee-----~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe  316 (535)
                         .+.+..+.     ..++.+.+.++.+|+.|.  +||+|-            .....+....+.+++...-.+-.+|.
T Consensus        83 ~~~~~~~~~e~lLf~A~R~~~~~~~I~paL~~g~--~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~  160 (236)
T 3lv8_A           83 PGEELQDITELLLVYAARVQLVENVIKPALARGE--WVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLY  160 (236)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHHHTHHHHHHTTC--EEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEE
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC--EEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEE
Confidence               12211111     123334445677889999  999993            22334444444444433223346777


Q ss_pred             EecCCHHHHHHhhcC--------CCCHHHHHHHhhcccc
Q 009432          317 ATYKDPAGCAARNVH--------GFTLDDIERMAGQWEE  347 (535)
Q Consensus       317 ~~~~d~e~ci~RNih--------~VpeEvIe~M~krfE~  347 (535)
                      +++ +++++++|-..        ....+..++..+.|+.
T Consensus       161 Ldv-~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~  198 (236)
T 3lv8_A          161 LDI-DPKLGLERARGRGELDRIEKMDISFFERARERYLE  198 (236)
T ss_dssp             EEC-CHHHHHHC-----CCCTTTTSCHHHHHHHHHHHHH
T ss_pred             EeC-CHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHH
Confidence            777 78888876432        1234566666666543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.17  E-value=1.1e-05  Score=73.86  Aligned_cols=133  Identities=19%  Similarity=0.155  Sum_probs=67.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...+|+|+|++|||||||++.|+..+    +.....++.|+++.....+                     ....|.....
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~---------------------~~~~~~~~~~   62 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHG---------------------RIDPWLPQSH   62 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSS---------------------CCCTTSSSHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcc---------------------cccCCccchh
Confidence            45789999999999999999998641    1112234555543211000                     0001111111


Q ss_pred             H-HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-----CCCH
Q 009432          262 M-EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH-----GFTL  335 (535)
Q Consensus       262 ~-ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih-----~Vpe  335 (535)
                      . ....++.+...+......|.  .+++|..... ..+..+    +..+..+.++.+.+ +.+++++|-..     -...
T Consensus        63 ~~~~~v~~~l~~~~~~~~~~~~--~~~~~~~~~~-~~l~~~----~~~~~~~~~ls~~~-~~~v~~~R~~~r~~~~lld~  134 (191)
T 1zp6_A           63 QQNRMIMQIAADVAGRYAKEGY--FVILDGVVRP-DWLPAF----TALARPLHYIVLRT-TAAEAIERCLDRGGDSLSDP  134 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSC--EEEECSCCCT-TTTHHH----HTTCSCEEEEEEEC-CHHHHHHHHHTTCTTSCCCH
T ss_pred             hhhHHHHHHHHHHHHHHhccCC--eEEEeccCcH-HHHHHH----HhcCCCeEEEEecC-CHHHHHHHHHhcCCCccCCH
Confidence            1 11122222222333345666  7889985432 222222    22244555666765 67777776543     1245


Q ss_pred             HHHHHHhhcccc
Q 009432          336 DDIERMAGQWEE  347 (535)
Q Consensus       336 EvIe~M~krfE~  347 (535)
                      +.++.+++.++.
T Consensus       135 ~~~~~~~~~~~~  146 (191)
T 1zp6_A          135 LVVADLHSQFAD  146 (191)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhc
Confidence            666666665543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.16  E-value=4.2e-06  Score=81.15  Aligned_cols=46  Identities=26%  Similarity=0.294  Sum_probs=33.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHc----CCCCcEEEeCCceeee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN----GGDAPRIHSMDDYFMT  226 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~----gG~~~rIlS~DDyfr~  226 (535)
                      ..+++|.|+|.+||||||+|+.|++.+...    .+..+.+++.|+|++.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~   69 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV   69 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence            356899999999999999999999864210    0112347899999874

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.15  E-value=9.7e-06  Score=79.15  Aligned_cols=144  Identities=15%  Similarity=0.135  Sum_probs=73.8

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHc----CCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhc
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN----GGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEY  256 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~----gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey  256 (535)
                      .+.++|++.|++||||||+++.|++.+...    | ..+ ++     .+... +      + ..    + +.+.+-+...
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g-~~v-~~-----~rep~-~------t-~~----g-~~ir~~l~~~   82 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAG-RHV-VV-----TREPG-G------T-RL----G-ETLREILLNQ   82 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGT-CCE-EE-----EESSS-S------S-HH----H-HHHHHHHHHS
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccc-eee-ee-----ecCCC-C------C-hH----H-HHHHHHHHcC
Confidence            356799999999999999999999987643    3 111 11     11110 0      0 00    0 1111111111


Q ss_pred             cCchHHH-----HHHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          257 CYEPEME-----EAYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       257 ~y~~e~e-----e~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      .+.+..+     ...++.+.+.++.+|+.|.  +||+|-            .....++...+.+++...-.+-.+|.+++
T Consensus        83 ~~~~~~~~llf~a~R~~~~~~~i~p~l~~g~--~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv  160 (227)
T 3v9p_A           83 PMDLETEALLMFAGRREHLALVIEPALARGD--WVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDV  160 (227)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTHHHHHHTTC--EEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC--EEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence            1222221     1122334445677889998  999993            22344555555555543334557778887


Q ss_pred             CCHHHHHHhhcCC-----C---CHHHHHHHhhcccc
Q 009432          320 KDPAGCAARNVHG-----F---TLDDIERMAGQWEE  347 (535)
Q Consensus       320 ~d~e~ci~RNih~-----V---peEvIe~M~krfE~  347 (535)
                       +++++++|-...     .   +.+.+++..+.|+.
T Consensus       161 -~~e~~~~Ri~~R~~~dr~E~~~~ef~~rv~~~Y~~  195 (227)
T 3v9p_A          161 -PPQIASARRGAVRMPDKFESESDAFFARTRAEYLR  195 (227)
T ss_dssp             -CSSCGGGTTTCCCCC---CCHHHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHhccCccchhhhhHHHHHHHHHHHHH
Confidence             667777764431     1   23455555555543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.12  E-value=2.7e-06  Score=77.56  Aligned_cols=39  Identities=28%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ...+|+|+|+|||||||+|+.|++.+    +  ..+++.|++++.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~----~--~~~~~~d~~~~~   48 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS----G--LKYINVGDLARE   48 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh----C--CeEEEHHHHHhh
Confidence            34578899999999999999999875    2  356677877554

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.10  E-value=6.9e-06  Score=77.96  Aligned_cols=67  Identities=10%  Similarity=0.022  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhhc
Q 009432          270 MLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAGQ  344 (535)
Q Consensus       270 llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~kr  344 (535)
                      ..+.+...|++|+  .||+|-.      ++-..++-+.++..+++|.+..++.+++.+|-..  .-+++.|++...+
T Consensus        81 ~~~~v~~~l~~g~--~vil~id------~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~  149 (186)
T 1ex7_A           81 TVASVKQVSKSGK--TCILDID------MQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSA  149 (186)
T ss_dssp             EHHHHHHHHHHTS--EEEEECC------HHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             ecceeeehhhCCC--EEEecCC------HHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3445677889999  9999862      2333334344455555666654567776665443  4567777655443

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.08  E-value=1.1e-05  Score=74.49  Aligned_cols=44  Identities=23%  Similarity=0.440  Sum_probs=33.1

Q ss_pred             CCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      +......+|+|+|.|||||||+|+.|++.+  . |  ..+++.|++.+.
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~l--~-g--~~~id~d~~~~~   48 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAEL--D-G--FQHLEVGKLVKE   48 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHHS--T-T--EEEEEHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHhc--C-C--CEEeeHHHHHHH
Confidence            344556789999999999999999999762  1 2  356688887664

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=98.03  E-value=0.00011  Score=69.57  Aligned_cols=140  Identities=21%  Similarity=0.208  Sum_probs=73.1

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      ++|++-|+-||||||.++.|++++.+.| ..+ ++.      .+-.+.            .....+.+-+......+..+
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g-~~v-~~t------reP~~t------------~~~~~ir~~l~~~~~~~~~~   60 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRG-KKV-ILK------REPGGT------------ETGEKIRKILLEEEVTPKAE   60 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTT-CCE-EEE------ESSCSS------------HHHHHHHHHHHHSCCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCC-CcE-EEE------ECCCCC------------cHHHHHHHHhhcccCChHHH
Confidence            4789999999999999999999987654 222 211      110000            00001111111111222111


Q ss_pred             ----HHHHHHHHHHHHHHHHcCCceEEEEeCC------------CCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH
Q 009432          264 ----EAYRSSMLKAFTRTLDEGNFTIVIVDDR------------NLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA  327 (535)
Q Consensus       264 ----e~~~q~llk~akkaLk~G~f~~VIVDaT------------N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~  327 (535)
                          .+.+....+.+..+|+.|.  +||+|--            .........+...+...=.+-.++.+++ +++++++
T Consensus        61 ~ll~~a~r~~~~~~I~~~L~~g~--~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~-~~e~~~~  137 (197)
T 3hjn_A           61 LFLFLASRNLLVTEIKQYLSEGY--AVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDV-DVETALK  137 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTC--EEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC--eEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCc-ChHHHHH
Confidence                1123334455777899999  9999942            2223333444444433223346667776 7899888


Q ss_pred             hhcC---CCCHHHHHHHhhccc
Q 009432          328 RNVH---GFTLDDIERMAGQWE  346 (535)
Q Consensus       328 RNih---~VpeEvIe~M~krfE  346 (535)
                      |...   --..+..++..+.|.
T Consensus       138 R~~~~dr~e~~ef~~rv~~~y~  159 (197)
T 3hjn_A          138 RKGELNRFEKREFLERVREGYL  159 (197)
T ss_dssp             HC---CTTCCHHHHHHHHHHHH
T ss_pred             hCcCcCccccHHHHHHHHHHHH
Confidence            8543   123455555544444

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.01  E-value=5e-06  Score=75.58  Aligned_cols=36  Identities=28%  Similarity=0.270  Sum_probs=29.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .|+|+|+|||||||+|+.|++.+    +  ..+++.|++++.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l----~--~~~~d~d~~~~~   41 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL----D--LVFLDSDFLIEQ   41 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH----T--CEEEEHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc----C--CCEEcccHHHHH
Confidence            58899999999999999999875    2  346677776653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.01  E-value=6.5e-06  Score=74.08  Aligned_cols=37  Identities=27%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ..+|+|+|.+||||||+++.|+..+    +  ..+++.|+++.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l----~--~~~id~d~~~~   40 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQL----N--MEFYDSDQEIE   40 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHT----T--CEEEEHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh----C--CCEEeccHHHH
Confidence            3479999999999999999999864    2  24556665543

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.99  E-value=7.3e-05  Score=72.04  Aligned_cols=143  Identities=15%  Similarity=0.132  Sum_probs=75.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh------c
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME------Y  256 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e------y  256 (535)
                      ..+|++.|++||||||+++.|.+.+...| ....++.     +... +.       ..|     +.+.+-+..      .
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~-----rep~-~t-------~~g-----~~ir~~l~~~~~~~~~   63 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFT-----REPG-GT-------QLA-----EKLRSLLLDIKSVGDE   63 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEE-----ESSC-SS-------HHH-----HHHHHHHHSTTTTTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceee-----eCCC-CC-------HHH-----HHHHHHHhcccccccc
Confidence            46899999999999999999999886653 2111211     1100 00       000     000000000      0


Q ss_pred             cCchHHHH-----HHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          257 CYEPEMEE-----AYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       257 ~y~~e~ee-----~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      ...+..+.     .-++.+.+.++.+|+.|.  +||+|-            ......+...+..++...-.+-.+|.+++
T Consensus        64 ~~~~~~e~lL~~A~R~~~~~~~i~paL~~g~--~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv  141 (213)
T 4tmk_A           64 VITDKAEVLMFYAARVQLVETVIKPALANGT--WVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDV  141 (213)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTHHHHHHTTC--EEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEEC
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeC
Confidence            11111111     122333345677899999  999994            22334455555555543334446777887


Q ss_pred             CCHHHHHHhhcC--------CCCHHHHHHHhhcccc
Q 009432          320 KDPAGCAARNVH--------GFTLDDIERMAGQWEE  347 (535)
Q Consensus       320 ~d~e~ci~RNih--------~VpeEvIe~M~krfE~  347 (535)
                       +++++++|-..        ....+.+++..+.|+.
T Consensus       142 -~~e~~~~Ri~~R~~~dr~E~~~~~f~~rv~~~y~~  176 (213)
T 4tmk_A          142 -TPEVGLKRARARGELDRIEQESFDFFNRTRARYLE  176 (213)
T ss_dssp             -CHHHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHH
Confidence             77877665321        2245556666655553

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.92  E-value=4e-05  Score=70.13  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=21.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +|+|+|.+||||||+|+.|++.+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            79999999999999999999875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.91  E-value=1.1e-05  Score=72.81  Aligned_cols=37  Identities=27%  Similarity=0.259  Sum_probs=29.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ..|+|+|.|||||||+|+.|++++    | . .+++.|++...
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l----g-~-~~id~D~~~~~   44 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL----K-L-EVLDTDMIISE   44 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH----T-C-CEEEHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh----C-C-CEEEChHHHHH
Confidence            479999999999999999999875    2 2 46677877654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.90  E-value=6.2e-05  Score=70.71  Aligned_cols=38  Identities=29%  Similarity=0.314  Sum_probs=30.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .+++|+|+|.+||||||+|+.|++ +    |  ..+++.|++.+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-l----g--~~~id~D~~~~~   40 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-L----G--INVIDADIIARQ   40 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-T----T--CEEEEHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-c----C--CEEEEccHHHHH
Confidence            468999999999999999999986 2    2  356788877654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.88  E-value=6.5e-05  Score=69.16  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=22.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...+|+|+|.+|||||||++.|...
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            4568999999999999999999875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.86  E-value=9.1e-07  Score=83.58  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=22.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ....+|+|+|++||||||+++.|...
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence            34568999999999999999999875

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.85  E-value=2.8e-05  Score=76.46  Aligned_cols=40  Identities=33%  Similarity=0.494  Sum_probs=31.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~  228 (535)
                      .+-+.|.|.|||||||+|+.|++.+    +  ..+++.+|+++...
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~----g--~~~is~gdllR~~~   47 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKF----G--IPQISTGDMLRAAV   47 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHH----T--CCEECHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHh----C--CCeeechHHHHHhc
Confidence            4567899999999999999999875    2  34668999988754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.81  E-value=1.7e-05  Score=73.44  Aligned_cols=35  Identities=34%  Similarity=0.486  Sum_probs=29.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      +|+|+|.+||||||+++.|++ +    |  ..+++.|++.+.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~----g--~~~i~~d~~~~~   37 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L----G--AYVLDADKLIHS   37 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T----T--CEEEEHHHHHHG
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C----C--CEEEEccHHHHH
Confidence            799999999999999999997 3    2  457788887654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.80  E-value=0.00022  Score=68.01  Aligned_cols=123  Identities=21%  Similarity=0.253  Sum_probs=64.5

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh-ccCchHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME-YCYEPEM  262 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e-y~y~~e~  262 (535)
                      ..|++-|+.||||||+++.|++++. . |.. .++..      +-.+.       .+|     ..+.+-+.. -.+.+..
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~-~-~~~-v~~~~------eP~~t-------~~g-----~~ir~~l~~~~~~~~~~   61 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLV-K-DYD-VIMTR------EPGGV-------PTG-----EEIRKIVLEGNDMDIRT   61 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT-T-TSC-EEEEE------SSTTC-------HHH-----HHHHHHHHSSCCCCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHH-C-CCC-EEEee------CCCCC-------hHH-----HHHHHHHhcccCCCHHH
Confidence            4789999999999999999999873 2 222 22111      00000       000     000000000 0011111


Q ss_pred             HH-----HHHHHHHHHHHHHHHcCCceEEEEeC------------CCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHH
Q 009432          263 EE-----AYRSSMLKAFTRTLDEGNFTIVIVDD------------RNLRVADFAQFWATAKRSGYEVYILEATYKDPAGC  325 (535)
Q Consensus       263 ee-----~~~q~llk~akkaLk~G~f~~VIVDa------------TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~c  325 (535)
                      +.     ..++.+.+.+..+|+.|.  +||+|-            ..........+..++...=.+=.+|.+++ ++++|
T Consensus        62 ~~lLf~a~R~~~~~~~i~p~l~~g~--~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~-~~e~~  138 (205)
T 4hlc_A           62 EAMLFAASRREHLVLKVIPALKEGK--VVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNV-SAEVG  138 (205)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHTTC--EEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC--EEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCC-CHHHH
Confidence            11     112234445677889999  999994            12234444445544433223336777776 88999


Q ss_pred             HHhhc
Q 009432          326 AARNV  330 (535)
Q Consensus       326 i~RNi  330 (535)
                      ++|-.
T Consensus       139 ~~Ri~  143 (205)
T 4hlc_A          139 RERII  143 (205)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88853

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.79  E-value=1.3e-06  Score=80.65  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..+|+|+|++|||||||++.|...
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            348999999999999999999875

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.78  E-value=0.00016  Score=70.47  Aligned_cols=30  Identities=30%  Similarity=0.523  Sum_probs=26.4

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      ....++|++.|++||||||+++.|.+.+..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            456789999999999999999999998865

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.76  E-value=1.4e-05  Score=74.18  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=22.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      +|+|+|++||||||+|+.|.+.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            7999999999999999999988743

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.74  E-value=0.00015  Score=66.75  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=22.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...+|+|+|.+||||||+++.|...
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3458999999999999999999875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.72  E-value=8.7e-05  Score=68.96  Aligned_cols=36  Identities=31%  Similarity=0.365  Sum_probs=28.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .+|.|+|.+||||||+++.|+. +    |  ..+++.|++.+.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-l----g--~~~id~d~~~~~   38 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-L----G--VPLVDADVVARE   38 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-T----T--CCEEEHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-C----C--CcccchHHHHHH
Confidence            5899999999999999999985 2    3  235688887653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.66  E-value=5.7e-05  Score=74.58  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=29.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .+|+|+|.+||||||+++.|++.+    |  ..++..|++++.
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~l----g--~~~~d~d~~~~~   85 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARSL----G--YTFFDCDTLIEQ   85 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHH----T--CEEEEHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhc----C--CcEEeCcHHHHH
Confidence            379999999999999999999875    2  246677776654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.61  E-value=0.00045  Score=71.54  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=30.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      ++.+|+|+|++||||||||..|++.+      ...|++.|.+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l------~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF------PLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS------CEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC------CCcEEccccc
Confidence            45699999999999999999999764      2368898887

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.54  E-value=0.00024  Score=68.49  Aligned_cols=60  Identities=15%  Similarity=0.052  Sum_probs=37.7

Q ss_pred             HHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHH
Q 009432          273 AFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERM  341 (535)
Q Consensus       273 ~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M  341 (535)
                      .+.+.|+.|.  ++|+|   ++...+.+++++..+ +  +.++.++ .+.+++.+|-..  .-+.+.|.+.
T Consensus       100 ~v~~~l~~G~--illLD---LD~~~~~~i~~~l~~-~--~tI~i~t-h~~~~l~~Rl~~rG~~~~e~i~~r  161 (219)
T 1s96_A          100 AIEQVLATGV--DVFLD---IDWQGAQQIRQKMPH-A--RSIFILP-PSKIELDRRLRGRGQDSEEVIAKR  161 (219)
T ss_dssp             HHHHHHTTTC--EEEEE---CCHHHHHHHHHHCTT-C--EEEEEEC-SSHHHHHHHHHTTSCSCHHHHHHH
T ss_pred             HHHHHHhcCC--eEEEE---ECHHHHHHHHHHccC-C--EEEEEEC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence            3567788898  99999   888899888887762 2  3333333 366665554322  2355555543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.48  E-value=0.00021  Score=73.39  Aligned_cols=36  Identities=31%  Similarity=0.294  Sum_probs=29.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      +.+|+|+|++||||||||+.|++.+   +   ..+++.|.+.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l---~---~~iis~Ds~q   40 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADAL---P---CELISVDSAL   40 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS---C---EEEEEECTTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc---C---CcEEeccchh
Confidence            4589999999999999999999864   1   3677888764

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.42  E-value=0.00077  Score=65.37  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=24.9

Q ss_pred             CCCCCCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          176 HRATRPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       176 ~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +|+....+.+|.|.|.+||||||+|+.|++++
T Consensus         7 ~~~m~~~~~iI~i~g~~gsGk~~i~~~la~~l   38 (223)
T 3hdt_A            7 GRFMGNKNLIITIEREYGSGGRIVGKKLAEEL   38 (223)
T ss_dssp             -----CCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcccCCCCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence            45555567899999999999999999999876

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=97.42  E-value=0.0007  Score=65.51  Aligned_cols=37  Identities=30%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      -..|.|+|..||||||+|+.|.+.     |  ..+++.|.+.+.
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~~-----g--~~vidaD~ia~~   45 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAAR-----G--ASLVDTDLIAHR   45 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHT-----T--CEEEEHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHC-----C--CcEEECcHHHHH
Confidence            357999999999999999999862     3  357798987654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.39  E-value=0.00032  Score=63.85  Aligned_cols=26  Identities=23%  Similarity=0.253  Sum_probs=23.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ...++|+|.+|+||||||+.|+..+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999988764

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=97.31  E-value=0.00082  Score=64.87  Aligned_cols=43  Identities=16%  Similarity=0.350  Sum_probs=33.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ..++||+++|.|||||+|+|+.|.+.+   |...+.++++.|..+.
T Consensus         9 ~~~~II~itGk~~SGKd~va~~l~~~~---g~~~~~vv~msD~iK~   51 (202)
T 3ch4_B            9 APRLVLLFSGKRKSGKDFVTEALQSRL---GADVCAVLRLSGPLKE   51 (202)
T ss_dssp             CCSEEEEEEECTTSSHHHHHHHHHHHH---CTTTEEEECTHHHHHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHHc---CCCCceEEEccHHHHH
Confidence            356799999999999999999998754   2223567788887663

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.30  E-value=0.00089  Score=71.58  Aligned_cols=43  Identities=19%  Similarity=0.240  Sum_probs=35.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      .+.+|+|+|++||||||++..|+.++... |..+.++..|-++.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~~R~  141 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDTWRP  141 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCCSST
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcch
Confidence            58999999999999999999999888765 45666777776543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.28  E-value=0.00039  Score=69.26  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=22.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+..|+|.|.||+|||+||+.|+..+
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678889999999999999999875

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.25  E-value=0.00012  Score=68.71  Aligned_cols=38  Identities=16%  Similarity=0.229  Sum_probs=30.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ..+|.|+|.+||||||+|+.|++.+    |  ..+++.|++++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~----g--~~~~d~g~i~~~   42 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL----Q--WHLLDSGAIYRV   42 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----C--CCcccCcceeeh
Confidence            4589999999999999999999764    2  346688888774

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.25  E-value=0.00029  Score=65.91  Aligned_cols=45  Identities=27%  Similarity=0.367  Sum_probs=34.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ....+|.|+|.+||||||+++.|...+...++ .+.+++.|++...
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~-~v~~~~~d~~~~~   64 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGI-SVCVFHMDDHIVE   64 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEEEGGGGCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC-eEEEeccCcccCC
Confidence            45689999999999999999999987755444 3455567776654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.23  E-value=0.00013  Score=73.24  Aligned_cols=43  Identities=19%  Similarity=0.241  Sum_probs=31.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ++.+|.|+|.+||||||+|+.|++.+... +..+.+++.|+|++
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~-~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeeEeecchhhc
Confidence            45689999999999999999999876432 23357889999986

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.16  E-value=0.0014  Score=60.52  Aligned_cols=39  Identities=23%  Similarity=0.386  Sum_probs=28.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ..+++|.|.+|||||||++.|+..+...++ .+.+++.+.
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-~v~~~~~~~   61 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGD-PCIYVTTEE   61 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHHTC-CEEEEESSS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-eEEEEEccc
Confidence            348899999999999999999866555444 344555544

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.16  E-value=0.0026  Score=59.65  Aligned_cols=39  Identities=18%  Similarity=0.332  Sum_probs=28.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ..+++|+|.|||||||||.+++......++ .+..++.++
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~-~v~~~~~e~   61 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGE-PGIYVALEE   61 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEEccC
Confidence            348999999999999999988766555543 444555554

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.16  E-value=0.0002  Score=66.62  Aligned_cols=41  Identities=32%  Similarity=0.447  Sum_probs=32.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ....+|+|+|.+||||||+|+.|++.+     ....+++.|+++..
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~-----~~~~~i~~D~~~~~   59 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHL-----PNCSVISQDDFFKP   59 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTS-----TTEEEEEGGGGBCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhc-----CCcEEEeCCccccC
Confidence            346789999999999999999998642     02467788988764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.13  E-value=0.00022  Score=65.50  Aligned_cols=26  Identities=23%  Similarity=0.241  Sum_probs=23.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...+|+|+|.+||||||+|+.|++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999763

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.12  E-value=0.00046  Score=64.74  Aligned_cols=44  Identities=30%  Similarity=0.498  Sum_probs=33.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ....+|.|+|.+|||||||++.|...+... |....+++.|++..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPMDGFHL   63 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEESGGGBC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEecCCCcC
Confidence            467899999999999999999999887533 22344667777654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.12  E-value=0.0032  Score=61.60  Aligned_cols=27  Identities=26%  Similarity=0.445  Sum_probs=23.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      ..-|+|+|.||+||||+|+.|+..+..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l~~   93 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLLHR   93 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999987654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.10  E-value=0.0026  Score=59.67  Aligned_cols=39  Identities=21%  Similarity=0.301  Sum_probs=26.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ..+++++|.||+|||+||.+++......++..+.+++.+
T Consensus        30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E   68 (251)
T 2zts_A           30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE   68 (251)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence            349999999999999999987654222334444455543

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.10  E-value=0.00095  Score=63.22  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=23.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.+|.|.|.+||||||+|+.|++++
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~l   30 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHY   30 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.07  E-value=0.0004  Score=69.84  Aligned_cols=47  Identities=28%  Similarity=0.424  Sum_probs=35.2

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcC-CCCcEEE-eCCceeee
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENG-GDAPRIH-SMDDYFMT  226 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g-G~~~rIl-S~DDyfr~  226 (535)
                      ...+.+|.|+|.+||||||||+.|...+...+ .....++ +.|+|+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~   76 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLT   76 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCC
Confidence            35678999999999999999999998875421 0123444 99998764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.06  E-value=0.0011  Score=62.83  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=16.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHH-HH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLR-DL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~-e~  206 (535)
                      ...+|+|+|.+|||||||++.|+ ..
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            34589999999999999999998 75

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.05  E-value=0.0023  Score=66.46  Aligned_cols=40  Identities=18%  Similarity=0.153  Sum_probs=29.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ...+++|.|.|||||||||..++..+...++ .+..++..+
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg-~VlyId~E~   99 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGG-VAAFIDAEH   99 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEeccc
Confidence            3469999999999999999999887655544 333444443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.02  E-value=0.0015  Score=60.44  Aligned_cols=23  Identities=22%  Similarity=0.062  Sum_probs=21.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+++|+|.|||||||||+.|+.
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999986

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.01  E-value=0.0021  Score=62.28  Aligned_cols=24  Identities=38%  Similarity=0.605  Sum_probs=21.1

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-|+|+|.||+||||+|+.|+..+
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            358899999999999999998763

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.00  E-value=0.0012  Score=70.20  Aligned_cols=44  Identities=30%  Similarity=0.306  Sum_probs=35.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ..+.+|+|+|++||||||++..|+..+...| ..+.++..|-++.
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-~kVllv~~D~~r~  138 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-YKVGLVAADVYRP  138 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTT-CCEEEEEECCSCH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEecCccch
Confidence            4578999999999999999999998887764 4556667775543

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.00  E-value=0.0012  Score=61.37  Aligned_cols=25  Identities=28%  Similarity=0.272  Sum_probs=22.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|.+|||||||++.|+..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4569999999999999999999864

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.99  E-value=0.0036  Score=64.44  Aligned_cols=39  Identities=21%  Similarity=0.183  Sum_probs=28.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ..+++|.|.|||||||||.+++......++ .+..++.+.
T Consensus        61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~-~vlyi~~E~   99 (349)
T 2zr9_A           61 GRVIEIYGPESSGKTTVALHAVANAQAAGG-IAAFIDAEH   99 (349)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEECCC
Confidence            338999999999999999999876655543 344455544

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.95  E-value=0.0007  Score=69.35  Aligned_cols=48  Identities=17%  Similarity=0.232  Sum_probs=36.6

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCceeeeh
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyfr~~  227 (535)
                      ...+.+|.|+|.+||||||||+.|...+... ++..+.+++.|++....
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~  137 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSN  137 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccch
Confidence            4578899999999999999999998875321 12346678999887543

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.94  E-value=0.00066  Score=63.06  Aligned_cols=41  Identities=32%  Similarity=0.446  Sum_probs=30.8

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ....+|.|+|.+|||||||++.|...+..    ...+++.|.++.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~~~   44 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGE----RVALLPMDHYYK   44 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGG----GEEEEEGGGCBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecCcccc
Confidence            45679999999999999999999986521    234667776654

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.93  E-value=0.0028  Score=61.60  Aligned_cols=36  Identities=8%  Similarity=-0.198  Sum_probs=27.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEE
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIH  218 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIl  218 (535)
                      ...+++++|.+||||||++..++..+...| ..+.++
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~kVli~   46 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-VKYLVF   46 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence            356999999999999999988877765553 344444

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.93  E-value=0.00057  Score=70.75  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=30.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      +.+|+|+|.+||||||||+.|++.+    +  ..|++.|++
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l----~--~~iis~Ds~   41 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKF----N--GEIISGDSM   41 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT----T--EEEEECCSS
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHc----C--Cceeccccc
Confidence            3689999999999999999999874    1  468899998

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.93  E-value=0.0003  Score=64.65  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=30.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +|.|+|.+||||||+|+.|++.+    |  ..+++.|++++..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l----g--~~~~d~d~~~~~~   40 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL----G--VPYLSSGLLYRAA   40 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH----T--CCEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc----C--CceeccchHHHhh
Confidence            89999999999999999999865    2  3466888887653

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.91  E-value=0.0019  Score=57.06  Aligned_cols=26  Identities=31%  Similarity=0.382  Sum_probs=22.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      +..|+|+|.||+||||+|+.+++.+.
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH
Confidence            34578999999999999999998764

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.90  E-value=0.0046  Score=64.26  Aligned_cols=38  Identities=16%  Similarity=0.188  Sum_probs=28.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      +|+|.|.|||||||||..++......++ .+..++.+.-
T Consensus        76 li~I~G~pGsGKTtlal~la~~~~~~g~-~vlyi~~E~s  113 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVAQAQKAGG-TCAFIDAEHA  113 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSCC
T ss_pred             EEEEEcCCCCChHHHHHHHHHHHHHCCC-eEEEEECCCC
Confidence            7888999999999999998876655443 4555565543

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.89  E-value=0.00056  Score=62.59  Aligned_cols=39  Identities=31%  Similarity=0.391  Sum_probs=31.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .++.+|+|+|.+||||||+|+.|++.     |  ..+++.|++.+.
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~-----g--~~~id~d~~~~~   44 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW-----G--YPVLDLDALAAR   44 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT-----T--CCEEEHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC-----C--CEEEcccHHHHH
Confidence            35679999999999999999999863     2  246788887654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.89  E-value=0.0027  Score=59.58  Aligned_cols=24  Identities=21%  Similarity=0.073  Sum_probs=21.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..+++|+|.||||||||++.|+..
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            348999999999999999999863

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.87  E-value=0.00038  Score=68.22  Aligned_cols=40  Identities=20%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ..+++|+|.|++||||||+|+.|++.+    +  ..+++.|++++.
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~l----g--~~~~d~g~~~r~   46 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARAL----G--ARYLDTGAMYRI   46 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh----C--CCcccCCcHHHH
Confidence            456799999999999999999999875    2  356688887655

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.87  E-value=0.0028  Score=60.20  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=22.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+.-|+|+|.||+||||+|+.|+..+
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            34468899999999999999999764

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.84  E-value=0.0049  Score=63.76  Aligned_cols=38  Identities=13%  Similarity=0.136  Sum_probs=28.5

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      .+++|.|.|||||||||..|+......++ .+..++...
T Consensus        64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~-~vlyid~E~  101 (356)
T 1u94_A           64 RIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEH  101 (356)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            38999999999999999998876655443 444555543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.84  E-value=0.00013  Score=69.92  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=22.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...+|+|+|++|||||||++.|.+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            4568999999999999999999875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.82  E-value=0.00059  Score=65.49  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=23.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++.+|+|+|.+||||||+++.|++.+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45799999999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.82  E-value=0.0077  Score=59.18  Aligned_cols=38  Identities=16%  Similarity=0.050  Sum_probs=27.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSM  220 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~  220 (535)
                      ..+++|+|.||||||||++.|+..+....|..+.+++.
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~   72 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            34899999999999999999988765442323334443

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.82  E-value=0.0032  Score=64.66  Aligned_cols=36  Identities=33%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      .+.+|+|+|++||||||||..|++.+      ...|+|.|.+
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~------~~~iis~Ds~   44 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKIL------PVELISVDSA   44 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHS------CEEEEECCTT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhC------CCcEEecccc
Confidence            45789999999999999999999864      2467888864

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.81  E-value=0.0032  Score=60.86  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=23.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +..+|++.|++||||||+++.|.+.+
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l   29 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKL   29 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45799999999999999999999876

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.79  E-value=0.0027  Score=65.30  Aligned_cols=35  Identities=20%  Similarity=0.166  Sum_probs=29.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      +.+|+|+|++||||||||..|++.+      ...|+|.|.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~------~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL------NGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT------TEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC------ccceeecCcc
Confidence            5689999999999999999999764      2468898876

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.77  E-value=0.00077  Score=73.24  Aligned_cols=28  Identities=14%  Similarity=0.179  Sum_probs=25.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      ..++|+|.|++||||||+|+.|++++.+
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            4589999999999999999999998753

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.73  E-value=0.011  Score=53.46  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |+|+|.||+||||+|+.+.+.+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            8999999999999999998865

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.70  E-value=0.00044  Score=64.61  Aligned_cols=38  Identities=24%  Similarity=0.208  Sum_probs=31.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      +++|+|+|.+||||||+|+.|++.+    |  ..+++.|++.+.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~----g--~~~~~~d~~~~~   40 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL----S--MIYVDTGAMYRA   40 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT----T--CEEEEHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc----C--CceecCChHHHH
Confidence            4689999999999999999999764    2  357788888664

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.69  E-value=0.0016  Score=66.07  Aligned_cols=46  Identities=26%  Similarity=0.332  Sum_probs=34.8

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCC-CCcEEEeCCceee
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGG-DAPRIHSMDDYFM  225 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG-~~~rIlS~DDyfr  225 (535)
                      .....+|.|+|.+|||||||++.|...+....| ..+.+++.|+++.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~  133 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLY  133 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBC
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCC
Confidence            457789999999999999999999987654322 2345667777654

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.0028  Score=67.56  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=23.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+.=|+|.|+||+|||+||++|+..+
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~  239 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATI  239 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            455678999999999999999999764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.67  E-value=0.0086  Score=58.00  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=23.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....-|+|+|.||+||||+|+.|+..+
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            455689999999999999999999763

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.66  E-value=0.0048  Score=65.37  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=28.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      +.+|+|+|++||||||||..|++.+   +   ..|++.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~---~---~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKF---N---GEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHH---T---EEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHC---C---CeEeecCc
Confidence            4589999999999999999999875   1   35788887

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.65  E-value=0.0014  Score=65.76  Aligned_cols=44  Identities=20%  Similarity=0.265  Sum_probs=33.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHH--HcCCCCcEEEeCCceee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEV--ENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~--e~gG~~~rIlS~DDyfr  225 (535)
                      ....+|.|+|.+|||||||++.|...+.  ..+| .+.+++.|++..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G-~i~vi~~d~~~~  123 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR-RVELITTDGFLH  123 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC-CEEEEEGGGGBC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC-eEEEEecCCccC
Confidence            4568999999999999999999998653  1222 356778887764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.65  E-value=0.00078  Score=64.35  Aligned_cols=40  Identities=23%  Similarity=0.261  Sum_probs=32.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ....+|+|+|.+||||||+++.|++.+    |  ..+++.|++.+.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~l----g--~~~~d~d~~~~~   53 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDF----G--FTYLDTGAMYRA   53 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH----C--CEEEEHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc----C--CceecCCCeeEc
Confidence            455689999999999999999999865    2  356788888764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.63  E-value=0.0039  Score=62.02  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=21.9

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .++|+|.||+||||||+.|...+..
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~~~~   63 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNEAKK   63 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHH
Confidence            5788999999999999999987644

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.0034  Score=66.47  Aligned_cols=27  Identities=30%  Similarity=0.552  Sum_probs=22.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+.=|+|.|+||+|||+||++|+..+
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e~  206 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHHT  206 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence            345568899999999999999999764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.62  E-value=0.004  Score=65.47  Aligned_cols=24  Identities=25%  Similarity=0.101  Sum_probs=20.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+++|+|.||||||||++.|+-
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Confidence            345899999999999999998763

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0027  Score=67.70  Aligned_cols=28  Identities=21%  Similarity=0.357  Sum_probs=23.9

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+.+.=|+|.|+||+|||+||++|+..+
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e~  239 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQT  239 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence            3456678999999999999999999764

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.0034  Score=66.75  Aligned_cols=27  Identities=26%  Similarity=0.502  Sum_probs=23.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+.=|+|.|+||+|||++|++|+..+
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANST  230 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            445578999999999999999999764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.60  E-value=0.0036  Score=63.16  Aligned_cols=24  Identities=25%  Similarity=0.174  Sum_probs=21.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..+++|+|.|||||||||.+++..
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHH
Confidence            448999999999999999999864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.57  E-value=0.016  Score=56.61  Aligned_cols=27  Identities=26%  Similarity=0.124  Sum_probs=22.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ...+++|+|.+|||||||++.|+..+.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            345899999999999999999987543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.0042  Score=66.31  Aligned_cols=27  Identities=33%  Similarity=0.567  Sum_probs=23.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+.=|+|.|+||+|||+||++|+..+
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~  240 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQT  240 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHh
Confidence            455679999999999999999999764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.53  E-value=0.0024  Score=63.98  Aligned_cols=25  Identities=44%  Similarity=0.697  Sum_probs=22.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.-|+|+|.||+|||++|+.|+..+
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4568999999999999999998764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.51  E-value=0.0035  Score=61.25  Aligned_cols=24  Identities=29%  Similarity=0.544  Sum_probs=21.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..-|+|.|.||+||||+|+.|+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            447889999999999999999875

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0039  Score=67.14  Aligned_cols=27  Identities=30%  Similarity=0.487  Sum_probs=23.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+.=|+|.|+||+|||+||++|+..+
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~e~  267 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVANRT  267 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence            455678899999999999999999764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.50  E-value=0.0094  Score=64.62  Aligned_cols=43  Identities=23%  Similarity=0.264  Sum_probs=32.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      ..+.+|+|+|++|+||||++.+|+.++... |..+.+++.|-++
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~D~~r  141 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICADTFR  141 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccccc
Confidence            457789999999999999999999887765 4455666665443

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.48  E-value=0.01  Score=60.55  Aligned_cols=26  Identities=15%  Similarity=-0.004  Sum_probs=22.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +...+++|+|.|||||||||..|+..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34569999999999999999999864

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.46  E-value=0.01  Score=61.27  Aligned_cols=26  Identities=23%  Similarity=0.151  Sum_probs=21.9

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ++.|.|.|||||||||-+++......
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~   55 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQ   55 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999998877665544

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.43  E-value=0.0015  Score=62.53  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=23.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +++|++.|.+||||||+++.|++.+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            5789999999999999999999864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.41  E-value=0.0036  Score=63.20  Aligned_cols=24  Identities=46%  Similarity=0.695  Sum_probs=21.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +.-|+|+|.||+|||+||+.|+..
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            356889999999999999999975

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.38  E-value=0.0055  Score=62.53  Aligned_cols=24  Identities=38%  Similarity=0.596  Sum_probs=21.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +.-|+|+|.||+||||||+.|+..
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            446889999999999999999875

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.37  E-value=0.011  Score=59.52  Aligned_cols=29  Identities=17%  Similarity=0.182  Sum_probs=23.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ...+++|+|.||+||||||.+++......
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~   95 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDN   95 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            34599999999999999999998765443

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.35  E-value=0.0094  Score=59.56  Aligned_cols=25  Identities=24%  Similarity=0.173  Sum_probs=22.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...+++|+|.|||||||||.+++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4569999999999999999998853

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.33  E-value=0.0044  Score=62.82  Aligned_cols=43  Identities=23%  Similarity=0.437  Sum_probs=33.2

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      ...+.+|+|+|++||||||+++.|+..+...++ .+.++..|-+
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-kV~lv~~D~~  143 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-SVVLAAADTF  143 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEECTT
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC-EEEEEccccc
Confidence            346789999999999999999999988876544 4455555543

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.31  E-value=0.0032  Score=64.36  Aligned_cols=24  Identities=46%  Similarity=0.731  Sum_probs=21.1

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-|+|+|.||+|||+||+.|+..+
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~  108 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEA  108 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHh
Confidence            357889999999999999999864

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.31  E-value=0.027  Score=58.08  Aligned_cols=115  Identities=9%  Similarity=0.130  Sum_probs=58.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      .||||.|.||+||||||..++...... +..+.+||...-......++-..    ..+     ..+ .++.....    .
T Consensus        47 ~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fSlEms~~ql~~Rlls~----~~~-----v~~-~~l~~g~L----s  111 (338)
T 4a1f_A           47 SLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFSLEMSAEQLALRALSD----LTS-----INM-HDLESGRL----D  111 (338)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEESSSCHHHHHHHHHHH----HHC-----CCH-HHHHHTCC----C
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHH----hhC-----CCH-HHHhcCCC----C
Confidence            499999999999999999998765543 33444555432211111000000    000     000 00000011    1


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHH-HHHHHhhc-CceEEEEE
Q 009432          264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQ-FWATAKRS-GYEVYILE  316 (535)
Q Consensus       264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~-f~~LAr~~-G~~V~vIe  316 (535)
                      ..-|+.+..++. .|....  +.|.|....+...... ...+.+++ +..+++|+
T Consensus       112 ~~e~~~l~~a~~-~l~~~~--l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVID  163 (338)
T 4a1f_A          112 DDQWENLAKCFD-HLSQKK--LFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFID  163 (338)
T ss_dssp             HHHHHHHHHHHH-HHHHSC--EEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             HHHHHHHHHHHH-HHhcCC--eEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            122444444333 344444  7888887777665444 44466677 77777776

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.30  E-value=0.031  Score=58.81  Aligned_cols=117  Identities=17%  Similarity=0.129  Sum_probs=59.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      ..+++|+|.||+||||||..++.......|..+.+++...=......++...    ..+...  ..+.        ...+
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~----~~~i~~--~~l~--------~g~l  265 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCS----EARIDM--NRVR--------LGQL  265 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHH----HTTCCT--TTCC--------GGGC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHH----HcCCCH--HHHh--------CCCC
Confidence            4499999999999999999998765543344445555542111110000000    000000  0000        0011


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHH-HHHHHHHhhcCceEEEEE
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADF-AQFWATAKRSGYEVYILE  316 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R-~~f~~LAr~~G~~V~vIe  316 (535)
                      ....|..+..++.. +....  +.|.|....+..+. .....+.++++..+++|+
T Consensus       266 ~~~~~~~~~~a~~~-l~~~~--l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID  317 (444)
T 2q6t_A          266 TDRDFSRLVDVASR-LSEAP--IYIDDTPDLTLMEVRARARRLVSQNQVGLIIID  317 (444)
T ss_dssp             CHHHHHHHHHHHHH-HHTSC--EEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred             CHHHHHHHHHHHHH-HhcCC--EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            12234444444333 44554  77777766665544 344556677888776665

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.28  E-value=0.00082  Score=65.27  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=23.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....+|+|.|++||||||+|+.|++.+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            456899999999999999999999764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.25  E-value=0.002  Score=62.67  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=28.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      ...+|.|+|.+||||||+++.|++++    |  ...+..|.++
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~L----g--~~~~d~g~i~   62 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESL----N--WRLLDSGAIY   62 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHT----T--CEEEEHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhc----C--CCcCCCCcee
Confidence            45689999999999999999999764    2  2344666665

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.22  E-value=0.012  Score=60.32  Aligned_cols=26  Identities=27%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +...++.|+|.+|||||||++.|+..
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34569999999999999999999865

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.17  E-value=0.0046  Score=57.22  Aligned_cols=27  Identities=26%  Similarity=0.151  Sum_probs=23.3

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ..|+|+|.||+||||+|+.+...+...
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~~~~~   79 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACARANEL   79 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            478899999999999999999876543

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.16  E-value=0.027  Score=59.39  Aligned_cols=39  Identities=21%  Similarity=0.230  Sum_probs=28.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ..+++|.|.||+||||||..|+.......|..+.+++..
T Consensus       203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            459999999999999999999877654334344455543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.14  E-value=0.01  Score=58.56  Aligned_cols=21  Identities=38%  Similarity=0.754  Sum_probs=19.8

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |+|.|.|||||||||+.|+..
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999999875

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.11  E-value=0.0038  Score=59.99  Aligned_cols=27  Identities=30%  Similarity=0.330  Sum_probs=23.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....+|.|+|..|||||||++.|+..+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            456799999999999999999998865

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.03  E-value=0.032  Score=59.21  Aligned_cols=44  Identities=23%  Similarity=0.266  Sum_probs=35.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      ..+.+|+|+|.+|+||||+|..|+..+....|..+.++..|-++
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r  141 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR  141 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            45678889999999999999999998877635566677777543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.02  E-value=0.0027  Score=59.36  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=21.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+|+|+|++|||||||++.|...+
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3478999999999999999998754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.02  E-value=0.0089  Score=60.29  Aligned_cols=41  Identities=20%  Similarity=0.187  Sum_probs=31.2

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      -....+|+|+|+.||||||+++.|+..+...+| .+.+...|
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g-~V~l~g~d  137 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGD  137 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCC
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeec
Confidence            456789999999999999999999988765544 33343333

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.02  E-value=0.02  Score=60.76  Aligned_cols=22  Identities=36%  Similarity=0.747  Sum_probs=20.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      -|+|+|.||+||||+|+.|...
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999999976

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.02  E-value=0.0082  Score=61.67  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=21.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..-|+|+|.||+|||+||+.|+..
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            457899999999999999999875

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.98  E-value=0.007  Score=61.90  Aligned_cols=40  Identities=25%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ..+.+|+|+|++||||||+++.|+..+...+| .+.+...|
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g-~V~l~g~D  166 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF-SVVIAASD  166 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEEC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC-EEEEEeec
Confidence            56789999999999999999999988776654 34444444

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.98  E-value=0.006  Score=61.33  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      .+.+|+|+|.+||||||++..|+..+....|..+.++..|-+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            456899999999999999999998876433555566666654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.95  E-value=0.0057  Score=58.63  Aligned_cols=23  Identities=30%  Similarity=0.663  Sum_probs=20.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      -|+|+|.||+||||+|+.|+..+
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHc
Confidence            48899999999999999998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.95  E-value=0.066  Score=55.29  Aligned_cols=28  Identities=25%  Similarity=0.285  Sum_probs=24.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      .-+|+++|..||||||+.+.|...+...
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            3499999999999999999998876543

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.90  E-value=0.0083  Score=65.12  Aligned_cols=44  Identities=20%  Similarity=0.273  Sum_probs=32.5

Q ss_pred             CCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      +.-....+|+|+|++|||||||++.|+..+...+| .+.+...|.
T Consensus       288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G-~V~l~g~D~  331 (503)
T 2yhs_A          288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK-SVMLAAGDT  331 (503)
T ss_dssp             CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEECCCT
T ss_pred             eeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC-eEEEecCcc
Confidence            33457889999999999999999999988765544 333333443

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.88  E-value=0.011  Score=61.46  Aligned_cols=41  Identities=20%  Similarity=0.187  Sum_probs=31.5

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      -....+|+|+|+.||||||+++.|+..+...+| .+.+...|
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G-~V~l~g~D  194 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGD  194 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCC
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhccccCC-EEEEeccc
Confidence            456789999999999999999999988766544 33443444

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.86  E-value=0.011  Score=62.30  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=22.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .++|+|.||+||||||+.|...+..
T Consensus       132 ~lll~Gp~G~GKTtLa~aia~~l~~  156 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNYVVQ  156 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999999887643

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.84  E-value=0.057  Score=57.25  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=28.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ..+|||+|.||+||||||.+++...... |..+.+++..
T Consensus       197 G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlE  234 (444)
T 3bgw_A          197 RNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE  234 (444)
T ss_dssp             SCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECC
Confidence            4599999999999999999998776544 3344444543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.84  E-value=0.0045  Score=57.52  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=21.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .|+|+|.+|||||||++.|...+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.83  E-value=0.0091  Score=55.79  Aligned_cols=28  Identities=21%  Similarity=0.220  Sum_probs=24.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      .+|+++|.+|||||||+.+|...+...|
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g   32 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREG   32 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence            4789999999999999999998876543

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.82  E-value=0.0036  Score=55.44  Aligned_cols=26  Identities=38%  Similarity=0.326  Sum_probs=22.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ...|+|+|.||+||||+|+.+++.+.
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHH
Confidence            33678999999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.77  E-value=0.039  Score=49.53  Aligned_cols=35  Identities=26%  Similarity=0.282  Sum_probs=24.8

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      ++|+|.+.........++.+.+..+.++++|.-.+
T Consensus       110 i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~  144 (195)
T 1svi_A          110 VQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA  144 (195)
T ss_dssp             EEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence            78899887654444556677777888887776655

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.76  E-value=0.0066  Score=55.83  Aligned_cols=27  Identities=22%  Similarity=0.374  Sum_probs=23.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ..|+|+|.+|+||||||+.|...+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            578899999999999999999876543

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.75  E-value=0.017  Score=62.02  Aligned_cols=22  Identities=36%  Similarity=0.694  Sum_probs=20.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |+|+|.||+||||||+.|+..+
T Consensus        52 vLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           52 ILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            8899999999999999999764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.74  E-value=0.0076  Score=54.28  Aligned_cols=27  Identities=26%  Similarity=0.263  Sum_probs=23.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      ...++|+|.+|||||||++.|...+..
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            347888999999999999999987643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.67  E-value=0.0093  Score=60.26  Aligned_cols=39  Identities=18%  Similarity=0.181  Sum_probs=29.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...+|.|+|++||||||+++.|+..+...+| .+.+...|
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g-~V~l~g~D  139 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK-KVMFCAGD  139 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEECCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEeec
Confidence            4568999999999999999999988765544 33343333

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.67  E-value=0.035  Score=59.08  Aligned_cols=40  Identities=10%  Similarity=-0.050  Sum_probs=28.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...+++|.|.||+||||||.+++.......|..+.+++..
T Consensus       241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E  280 (503)
T 1q57_A          241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE  280 (503)
T ss_dssp             TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred             CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence            4458999999999999999999876543313344455544

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.66  E-value=0.0066  Score=55.26  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=21.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      +++|+|.+|+||||+|+.+++.+.
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            789999999999999999988753

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.58  E-value=0.084  Score=56.02  Aligned_cols=40  Identities=33%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      .+.+|+|+|++||||||++..|+..+...+ ..+.++..|-
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g-~~Vllvd~D~  136 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADT  136 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEeeccc
Confidence            567888889999999999999999887654 3555666653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.57  E-value=0.0059  Score=57.04  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=22.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|+|.+|||||||++.|...+
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34589999999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.57  E-value=0.0084  Score=58.06  Aligned_cols=36  Identities=28%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      ...|+|+|.+||||||||..|+++    +  . .+++.|-...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~----g--~-~iIsdDs~~v   69 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR----G--H-RLIADDRVDV   69 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT----T--C-EEEESSEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh----C--C-eEEecchhhe
Confidence            457999999999999999999864    2  2 6777665443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.56  E-value=0.015  Score=59.07  Aligned_cols=42  Identities=21%  Similarity=0.224  Sum_probs=32.6

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ...+.+|+|+|.+|+||||++..|+..+...++ .+.++..|-
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~-kVllid~D~  143 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY-KVLIAAADT  143 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            356789999999999999999999988876644 444555553

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.56  E-value=0.0093  Score=57.80  Aligned_cols=24  Identities=38%  Similarity=0.522  Sum_probs=21.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-|+|+|.||+|||++|+.|+..+
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            357789999999999999999875

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.46  E-value=0.0062  Score=57.84  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=22.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+++|+|.+|||||||++.|...+
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4489999999999999999999753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.46  E-value=0.014  Score=55.66  Aligned_cols=39  Identities=15%  Similarity=0.232  Sum_probs=30.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ....++++.|.+|+||||++..|+..+. . |..+.++..|
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd~D   50 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVNLD   50 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEECC
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEeCC
Confidence            4578999999999999999999998775 4 4444455544

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.44  E-value=0.035  Score=67.97  Aligned_cols=41  Identities=12%  Similarity=0.101  Sum_probs=30.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      .+|+|.|.||+||||||.+++......++ .+..++..+-..
T Consensus       733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~-~VlyiS~Ees~~  773 (1706)
T 3cmw_A          733 RIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALD  773 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEECTTSCCC
T ss_pred             ceEEEECCCCCCcHHHHHHHHHHHHHcCC-CeEEEeccchHH
Confidence            38999999999999999999877655443 445556555443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.42  E-value=0.016  Score=59.24  Aligned_cols=40  Identities=30%  Similarity=0.491  Sum_probs=30.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ....+|.|+|.||||||||.+.|...+...++ .+.|+..|
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~-~v~V~~~d  111 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGH-KLSVLAVD  111 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCC-eEEEEeec
Confidence            34789999999999999999999887655433 34455543

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.41  E-value=0.01  Score=56.46  Aligned_cols=42  Identities=21%  Similarity=0.255  Sum_probs=27.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHH-----HcCCCCcEEEeCCcee
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEV-----ENGGDAPRIHSMDDYF  224 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~-----e~gG~~~rIlS~DDyf  224 (535)
                      .++++++|.||||||++|..+...+.     +.|.....+...|++.
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~   51 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLK   51 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBC
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcc
Confidence            45899999999999999988643321     1221334445566654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.37  E-value=0.014  Score=61.47  Aligned_cols=24  Identities=46%  Similarity=0.695  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +.-|+|+|.||+|||+||+.|+..
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~  190 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATE  190 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999999975

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=95.37  E-value=0.008  Score=57.49  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=20.1

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |+|+|.||+||||||+.|+..+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999998753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.36  E-value=0.0098  Score=63.11  Aligned_cols=43  Identities=30%  Similarity=0.421  Sum_probs=33.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCcee
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYF  224 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyf  224 (535)
                      ..+.+|+|+|.+|+||||+|..|+..+...| ..+.+++.|-++
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G-~kVllv~~D~~r  139 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRG-LKPALIAADTYR  139 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHH-CCEEEECCSCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEeccccC
Confidence            3457899999999999999999998877654 455666766543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.34  E-value=0.021  Score=56.49  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.++++.|.||+||||+|+.|+..+
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l   72 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDV   72 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHh
Confidence            3478999999999999999998763

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.30  E-value=0.014  Score=54.41  Aligned_cols=28  Identities=18%  Similarity=0.175  Sum_probs=23.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ..+|+++|.+|||||||++.|...+...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            3478999999999999999998876543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.27  E-value=0.018  Score=58.83  Aligned_cols=40  Identities=25%  Similarity=0.383  Sum_probs=30.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ....+|+|+|.||+|||||+..|...+... |..+.++..|
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi~~D  116 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVLAVD  116 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEEecC
Confidence            356789999999999999999998877654 3444555554

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.24  E-value=0.0095  Score=52.70  Aligned_cols=21  Identities=33%  Similarity=0.612  Sum_probs=19.3

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |+|.|.||+|||++|+.|...
T Consensus        27 vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           27 VWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.23  E-value=0.055  Score=66.27  Aligned_cols=38  Identities=13%  Similarity=0.145  Sum_probs=28.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      +++|+|.||+||||||.+++......|+ .+..++.+.-
T Consensus       385 lilI~G~pGsGKTtLaLq~a~~~~~~G~-~vlyis~E~s  422 (1706)
T 3cmw_A          385 IVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHA  422 (1706)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEECTTSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEccCc
Confidence            9999999999999999998876655543 4455555443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.17  E-value=0.01  Score=59.89  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.3

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..++|+|.||+||||||+.|+..+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            358899999999999999999764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.14  E-value=0.02  Score=56.48  Aligned_cols=28  Identities=29%  Similarity=0.278  Sum_probs=24.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      ...+|+++|..||||||+.+.|...+..
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence            4558999999999999999999887644

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.09  E-value=0.019  Score=65.62  Aligned_cols=35  Identities=31%  Similarity=0.504  Sum_probs=26.8

Q ss_pred             hcCCCC---CCCCCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          172 LKQPHR---ATRPDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       172 l~~p~r---~~r~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |+.|..   +....+.-|+|.|+||+|||+||++|+..
T Consensus       224 l~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          224 LRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             HHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             ccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            556643   22345677999999999999999999964

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.07  E-value=0.066  Score=66.55  Aligned_cols=89  Identities=15%  Similarity=0.199  Sum_probs=51.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      ...|+|+|+||+||||||.++......+|+ .+..++..+.+......        .+|.+-.      ++  .++.+..
T Consensus      1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~-~v~Fi~~e~~~~~l~a~--------~~G~dl~------~l--~v~~~~~ 1489 (2050)
T 3cmu_A         1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPIYAR--------KLGVDID------NL--LCSQPDT 1489 (2050)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEECTTSCCCHHHHH--------HTTCCTT------TC--EEECCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEEEcccccCHHHHH--------HcCCCch------hc--eeecCCh
Confidence            348999999999999999998776555543 45565666554333211        1221111      01  1111111


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCC
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRN  292 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN  292 (535)
                      .+    .+++.+.+.++++.+.+||||..+
T Consensus      1490 ~E----~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1490 GE----QALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             HH----HHHHHHHHHHHHTCCSEEEESCGG
T ss_pred             HH----HHHHHHHHHHhcCCCCEEEEcChh
Confidence            11    233445556666778899999873

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.03  E-value=0.011  Score=58.65  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=21.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...|+|+|.||+||||+|+.|+..+
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHh
Confidence            4478999999999999999999753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.01  E-value=0.0092  Score=58.05  Aligned_cols=27  Identities=22%  Similarity=0.447  Sum_probs=23.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +++-.|++.|+||+||||+|..|+..+
T Consensus        56 Pkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           56 PKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            445579999999999999999999875

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.00  E-value=0.012  Score=57.38  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=20.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |+|+|.|||||||||+.|+..+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCcChHHHHHHHHHHHc
Confidence            8899999999999999998753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.95  E-value=0.038  Score=59.36  Aligned_cols=29  Identities=21%  Similarity=0.374  Sum_probs=24.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ...+++|.|.+|||||||++.|+......
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~  308 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENACAN  308 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            34589999999999999999998776544

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.93  E-value=0.026  Score=57.56  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=29.1

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEe
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHS  219 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS  219 (535)
                      ....+|.|+|.||||||||.+.|...+...+| ...|+.
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g-~v~i~~   90 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGH-KVAVLA   90 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC-EEEEEE
Confidence            45679999999999999999999877655444 334444

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=94.90  E-value=0.16  Score=50.78  Aligned_cols=25  Identities=24%  Similarity=0.208  Sum_probs=21.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +.+-.|.++|.||+|||||..+|..
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4567899999999999999999873

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=94.85  E-value=0.011  Score=56.26  Aligned_cols=27  Identities=22%  Similarity=0.437  Sum_probs=23.5

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .....+|.|.|..||||||+++.|...
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            345689999999999999999999864

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.81  E-value=0.02  Score=55.83  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=22.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ...|+|+|.||+||||+|+.|+..+.
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            35789999999999999999998753

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.80  E-value=0.075  Score=66.06  Aligned_cols=37  Identities=14%  Similarity=0.183  Sum_probs=28.2

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      +++|.|.||+||||||.+++......| ..+..++...
T Consensus       385 lilI~G~pGsGKTtLaLqia~~~a~~G-~~vlyis~E~  421 (2050)
T 3cmu_A          385 IVEIYGPESSGKTTLTLQVIAAAQREG-KTCAFIDAEH  421 (2050)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEECTTS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEEcCC
Confidence            999999999999999999987765443 3444555544

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.79  E-value=0.008  Score=57.76  Aligned_cols=22  Identities=36%  Similarity=0.688  Sum_probs=20.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |+|+|.||+||||+|+.|+..+
T Consensus        47 vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999999764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.77  E-value=0.018  Score=52.64  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=23.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....++.|.|..|||||||.|.|...+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            345689999999999999999999865

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=94.75  E-value=0.034  Score=55.65  Aligned_cols=39  Identities=33%  Similarity=0.361  Sum_probs=30.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ...+|+++|.+|+||||+++.|+..+...++ .+.++..|
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~-~v~l~~~d  135 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR-RPLLVAAD  135 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEecCC
Confidence            5668888899999999999999988776544 44454544

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=94.74  E-value=0.18  Score=50.53  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..|+|+|.||+|||||..+|..
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g   29 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLG   29 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4699999999999999999974

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.71  E-value=0.018  Score=53.45  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=22.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      +|.|+|.+|||||||++.|...+...
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            78899999999999999999876543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=94.64  E-value=0.027  Score=56.58  Aligned_cols=39  Identities=26%  Similarity=0.329  Sum_probs=30.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      +.+|+++|.+|+||||++..|+..+...|+ .+.++..|-
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~-~v~l~~~D~  136 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF-KVGLVGADV  136 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            678888999999999999999988776544 445555553

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.63  E-value=0.015  Score=59.06  Aligned_cols=25  Identities=40%  Similarity=0.541  Sum_probs=21.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.-|+|+|.||+|||++|+.|++.+
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3467889999999999999999764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.61  E-value=0.027  Score=53.58  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..-|+|+|.+|+||||+|..|.++
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            347999999999999999999864

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.60  E-value=0.018  Score=57.74  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=22.0

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..|+|+|.||+|||++|+.++..+
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l   94 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQAL   94 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.59  E-value=0.017  Score=58.62  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=23.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +...+|.|+|.+|||||||++.|...+
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            344489999999999999999999875

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.57  E-value=0.022  Score=57.97  Aligned_cols=24  Identities=38%  Similarity=0.484  Sum_probs=21.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-|+|+|.||+||||+|+.|++.+
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            358899999999999999999764

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.55  E-value=0.028  Score=52.35  Aligned_cols=28  Identities=14%  Similarity=0.006  Sum_probs=21.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      .+++++|.+||||||++.++...+...+
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g   31 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKLGK   31 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            4899999999999999966665544443

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.53  E-value=0.018  Score=54.16  Aligned_cols=24  Identities=25%  Similarity=0.470  Sum_probs=21.9

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      +|.|+|.+|||||||++.|+..+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            688999999999999999998775

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.53  E-value=0.031  Score=57.82  Aligned_cols=30  Identities=27%  Similarity=0.256  Sum_probs=25.5

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      -....+|+++|.+||||||+.+.|...+..
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            345678999999999999999999987654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.48  E-value=0.021  Score=59.68  Aligned_cols=27  Identities=30%  Similarity=0.396  Sum_probs=23.1

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +...+|+|+|.||||||||++.|+..+
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345589999999999999999999753

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.47  E-value=0.028  Score=60.21  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=22.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...|+|+|.||+||||+|+.|++.+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3578999999999999999999764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=94.46  E-value=0.011  Score=52.33  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=18.5

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|.|.||+|||++|+.|..
T Consensus        30 vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           30 VFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             EEEEEETTCCHHHHHGGGCC
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            77899999999999999975

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.44  E-value=0.02  Score=57.54  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=23.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHH-HcC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEV-ENG  211 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~-e~g  211 (535)
                      .-|+|.|.||+|||+||+.|+..+. ..|
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~~~~g  181 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELSEKKG  181 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence            4688999999999999999998776 543

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.44  E-value=0.023  Score=60.72  Aligned_cols=24  Identities=38%  Similarity=0.522  Sum_probs=21.3

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-|+|+|+||+||||+|+.|+..+
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~~l   74 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAKLA   74 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHc
Confidence            348899999999999999999864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.44  E-value=0.029  Score=58.53  Aligned_cols=26  Identities=46%  Similarity=0.609  Sum_probs=22.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ...|+|+|.|||||||+++.|+..+.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            45789999999999999999987653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.42  E-value=0.04  Score=56.01  Aligned_cols=40  Identities=23%  Similarity=0.367  Sum_probs=30.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ....+|+++|.||+|||||++.|...+...++ ...++..|
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~-~v~v~~~d   93 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL-KVAVIAVD   93 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC-CEEEEEEC
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEEeec
Confidence            45678899999999999999999887665543 34455544

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.33  E-value=0.029  Score=51.84  Aligned_cols=26  Identities=23%  Similarity=0.286  Sum_probs=22.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....|+|+|.+|||||||+.+|...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.32  E-value=0.03  Score=49.94  Aligned_cols=24  Identities=38%  Similarity=0.509  Sum_probs=21.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...-|+|+|.+|+|||||.++|..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            567899999999999999999974

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=94.31  E-value=0.037  Score=59.45  Aligned_cols=24  Identities=38%  Similarity=0.632  Sum_probs=20.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +.-|+|.|.||+|||++|+.|...
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~  261 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANE  261 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHH
Confidence            345889999999999999999865

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.30  E-value=0.018  Score=54.43  Aligned_cols=21  Identities=38%  Similarity=0.382  Sum_probs=19.0

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +|++.|.+||||||||.+|+.
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~   21 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC
T ss_pred             CEEEECCCCCcHHHHHHHHHh
Confidence            478999999999999999984

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=94.27  E-value=0.035  Score=56.67  Aligned_cols=26  Identities=12%  Similarity=0.107  Sum_probs=24.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+++||+-|.=||||||.++.|.+.+
T Consensus        85 ~~vlIvfEG~DgAGKgt~Ik~L~e~L  110 (304)
T 3czq_A           85 KRVMAVFEGRDAAGKGGAIHATTANM  110 (304)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999999865

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=94.26  E-value=0.031  Score=58.92  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-|+|.|+||+|||++|+.|+..+
T Consensus        64 ~~iLl~GppGtGKT~la~ala~~l   87 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQEL   87 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHh
Confidence            358899999999999999999875

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.24  E-value=0.024  Score=56.03  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++|.|.||+||||+|+.|+..+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8899999999999999998875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.24  E-value=0.019  Score=55.52  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||.+.|.-.
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3448999999999999999999754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.23  E-value=0.026  Score=51.59  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...|+|+|.+|||||||.+.|..
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~   51 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTR   51 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhc
Confidence            46799999999999999999985

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.17  E-value=0.023  Score=56.50  Aligned_cols=27  Identities=26%  Similarity=0.394  Sum_probs=22.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ....|+|+|.||+||||+|+.+...+.
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            344788999999999999999987753

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.16  E-value=0.019  Score=52.45  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=22.2

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      -.....|+|+|.+|||||||.+.|..
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            34567899999999999999999863

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.12  E-value=0.025  Score=56.09  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=23.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      ....|+|+|.+|+||||||+.+...+..
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3447889999999999999999887543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.09  E-value=0.031  Score=49.50  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...|+|+|.+|+|||||.++|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            45799999999999999999974

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.07  E-value=0.027  Score=56.49  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=20.9

Q ss_pred             EEEEccCCChHHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ++++|.||+||||+|+.|+..+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            78899999999999999998753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=94.06  E-value=0.029  Score=55.96  Aligned_cols=23  Identities=35%  Similarity=0.523  Sum_probs=21.2

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .++|+|.+|+||||+++.+...+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            78899999999999999998875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.05  E-value=0.026  Score=55.98  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      -|+|+|.||+|||++|+.|+..
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            4789999999999999999875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.04  E-value=0.031  Score=50.24  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=22.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ....-|+|+|.+|+|||||...|..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~   70 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4566899999999999999999975

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.02  E-value=0.035  Score=47.57  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +-|+++|.+|+|||||.+.|..
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~   25 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999874

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.02  E-value=0.022  Score=54.64  Aligned_cols=24  Identities=33%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|.-.
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            348999999999999999999754

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.98  E-value=0.031  Score=55.97  Aligned_cols=26  Identities=27%  Similarity=0.581  Sum_probs=22.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      +..|+|+|.||+||||+|+.+...+.
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~   70 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIE   70 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            34899999999999999999987653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.97  E-value=0.04  Score=51.08  Aligned_cols=26  Identities=31%  Similarity=0.300  Sum_probs=22.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....|+|+|.+|+|||||+.+|...+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35678888999999999999998653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.93  E-value=0.024  Score=54.92  Aligned_cols=24  Identities=25%  Similarity=0.236  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|...
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            348999999999999999999754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=93.93  E-value=0.03  Score=50.15  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=21.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+++|.+|+|||||++.|..
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHc
Confidence            456799999999999999999974

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.92  E-value=0.041  Score=48.36  Aligned_cols=25  Identities=16%  Similarity=0.262  Sum_probs=21.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+..-|+|+|.+|+|||||.++|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3456789999999999999999874

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=93.90  E-value=0.034  Score=54.54  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..|+|+|.||+||||+|+.|...+
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~   62 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHEL   62 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh
Confidence            357889999999999999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.89  E-value=0.036  Score=47.97  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+|+|.+|+|||||.+.|..
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHc
Confidence            345689999999999999999875

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=93.85  E-value=0.025  Score=56.15  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      -|+|.|.||+|||+||+.|+..+
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            48889999999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.85  E-value=0.031  Score=48.23  Aligned_cols=35  Identities=17%  Similarity=0.154  Sum_probs=23.9

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      ++|+|.++........+.++.+..+.++.+|--.+
T Consensus        84 i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  118 (161)
T 2dyk_A           84 LFAVDGRAELTQADYEVAEYLRRKGKPVILVATKV  118 (161)
T ss_dssp             EEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECc
Confidence            77899887544444566667777778876666655

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.85  E-value=0.031  Score=54.22  Aligned_cols=25  Identities=32%  Similarity=0.454  Sum_probs=21.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||.+.|.-.
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4458999999999999999999854

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.83  E-value=0.038  Score=47.52  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+++|.+|+|||||.+.|..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999874

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.82  E-value=0.03  Score=54.51  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .++.|+|..|||||||.+.|.-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999999854

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=93.81  E-value=0.03  Score=53.83  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=19.9

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      -|+|+|.||+|||++|+.|...
T Consensus        31 ~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           31 PVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEECCCCCcHHHHHHHHHHh
Confidence            5788999999999999999875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.81  E-value=0.038  Score=47.88  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+-|+|+|.+|+|||||.+.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            45689999999999999999874

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.78  E-value=0.036  Score=50.61  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+-|+|+|.+|+|||||.+.|..
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~   27 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTR   27 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhc
Confidence            45689999999999999999985

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=93.74  E-value=0.046  Score=48.02  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=21.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+-|+|+|.+|+|||||.++|..
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHh
Confidence            3456799999999999999999863

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=93.73  E-value=0.019  Score=56.90  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |+|+|.||+|||++|+.|...+
T Consensus        48 vLl~G~~GtGKT~la~~la~~~   69 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALL   69 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHS
T ss_pred             EEEECCCCccHHHHHHHHHHhC
Confidence            8899999999999999999753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.72  E-value=0.046  Score=47.07  Aligned_cols=23  Identities=26%  Similarity=0.314  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+++|.+|+|||||.+.|..
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            45689999999999999999874

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=93.70  E-value=0.037  Score=54.33  Aligned_cols=37  Identities=19%  Similarity=0.139  Sum_probs=27.8

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      ++|.|+|.+||||||+|+.|.+.+    |  ..+++.++..+.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~----g--~~~~~~~~~~~~   38 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNY----S--AVKYQLAGPIKD   38 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----C--EEECCTTHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc----C--CeEEecChHHHH
Confidence            589999999999999999998742    3  345566555443

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.69  E-value=0.026  Score=53.86  Aligned_cols=28  Identities=25%  Similarity=0.242  Sum_probs=22.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      .++.|+|..|||||||.+.|.-. ....|
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G   50 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSK   50 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence            37889999999999999999876 43334

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.69  E-value=0.034  Score=48.13  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.6

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +=|+|+|.+|+|||||.++|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999874

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=93.67  E-value=0.04  Score=49.45  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..-|+|+|.+|+|||||.++|..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45789999999999999999974

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=93.66  E-value=0.028  Score=55.58  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=21.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||.+.|.-.
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3448999999999999999999754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.64  E-value=0.031  Score=55.62  Aligned_cols=63  Identities=11%  Similarity=0.124  Sum_probs=37.6

Q ss_pred             ceEEEEeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCC---HHHHHHhhc----CCCCHHHHHHHhhcc
Q 009432          283 FTIVIVDD-RNLRVADFAQFWATAKRSGYEVYILEATYKD---PAGCAARNV----HGFTLDDIERMAGQW  345 (535)
Q Consensus       283 f~~VIVDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d---~e~ci~RNi----h~VpeEvIe~M~krf  345 (535)
                      +.++|+|. ...+......++++..+..-.+.+|.++...   ...+..|-.    ...+.+.+..+..+.
T Consensus       135 ~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~  205 (354)
T 1sxj_E          135 YKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDV  205 (354)
T ss_dssp             CEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred             CeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHH
Confidence            45999995 5677788888888888765455555554211   123333432    256666666665544

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.60  E-value=0.035  Score=54.12  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..++.|+|..|||||||.+.|.-
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34899999999999999999985

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=93.59  E-value=0.038  Score=53.73  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=20.5

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +++.|.||+||||+|+.+++.+
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8999999999999999999875

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=93.57  E-value=0.036  Score=48.12  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +=|+|+|.+|+|||||.++|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            4589999999999999999874

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=93.57  E-value=0.17  Score=57.64  Aligned_cols=25  Identities=36%  Similarity=0.450  Sum_probs=21.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      -++|+|.||+||||+|+.|+..+..
T Consensus       193 ~vlL~G~pG~GKT~la~~la~~l~~  217 (854)
T 1qvr_A          193 NPVLIGEPGVGKTAIVEGLAQRIVK  217 (854)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHhc
Confidence            4688999999999999999987643

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=93.57  E-value=0.041  Score=54.81  Aligned_cols=64  Identities=22%  Similarity=0.338  Sum_probs=37.7

Q ss_pred             CCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhc----CCCCHHHHHHHhhcc
Q 009432          281 GNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNV----HGFTLDDIERMAGQW  345 (535)
Q Consensus       281 G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNi----h~VpeEvIe~M~krf  345 (535)
                      |...+||||.. .........+.++..+..-.+.+|.+.. ..    ..+..|-.    ...+.+.+..+..++
T Consensus       118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~-~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~  190 (373)
T 1jr3_A          118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT-DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHI  190 (373)
T ss_dssp             SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES-CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred             CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC-ChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHH
Confidence            33458999975 3456677778888877666666666652 22    23333322    256666666665544

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=93.56  E-value=0.037  Score=48.25  Aligned_cols=21  Identities=38%  Similarity=0.613  Sum_probs=18.9

Q ss_pred             EEEEEEccCCChHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      +=|+|+|.+|+|||||.++|.
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            348999999999999999985

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=93.54  E-value=0.034  Score=48.30  Aligned_cols=20  Identities=40%  Similarity=0.785  Sum_probs=18.3

Q ss_pred             EEEEEccCCChHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~  204 (535)
                      =|+|+|.+|+|||||.++|.
T Consensus         4 ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            48999999999999999985

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.53  E-value=0.038  Score=49.79  Aligned_cols=23  Identities=30%  Similarity=0.297  Sum_probs=20.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.+|+|..|||||||+++|.-.+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHH
Confidence            88999999999999999998543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=93.53  E-value=0.054  Score=47.12  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=21.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+..-|+|+|.+|+|||||.++|..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999999974

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.53  E-value=0.048  Score=47.65  Aligned_cols=23  Identities=30%  Similarity=0.658  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..-|+|+|.+|+|||||.++|..
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            45699999999999999999863

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.52  E-value=0.045  Score=55.85  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=21.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...+.|+|.+|||||||++.|...+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999999764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=93.51  E-value=0.031  Score=55.72  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|.-.
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcC
Confidence            348999999999999999999754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=93.51  E-value=0.038  Score=47.96  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.+.|..
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~   28 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVE   28 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            45689999999999999999875

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=93.51  E-value=0.06  Score=47.74  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+|+|.+|+|||||.++|..
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~   29 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTK   29 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            456799999999999999999975

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=93.50  E-value=0.055  Score=48.12  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=21.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ....-|+|+|.+|+|||||.++|..
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFN   45 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHc
Confidence            3455788999999999999999874

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.49  E-value=0.032  Score=54.66  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=21.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||.+.|.-.
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3458999999999999999999754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.49  E-value=0.032  Score=54.47  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|...
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            348999999999999999999754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.49  E-value=0.032  Score=54.95  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=21.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||.+.|.-.
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3448999999999999999999854

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.49  E-value=0.046  Score=47.94  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...-|+|+|.+|+|||||.+.|..
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            456799999999999999999874

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.48  E-value=0.037  Score=54.58  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=21.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...++.|+|..|||||||.+.|.-
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            445899999999999999999985

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=93.48  E-value=0.038  Score=48.53  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..=|+|+|.+|+|||||.+.|..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            45689999999999999999874

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=93.48  E-value=0.048  Score=47.17  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.+.|..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            35689999999999999999874

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.47  E-value=0.039  Score=47.75  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.++|..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            45689999999999999999874

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.46  E-value=0.032  Score=54.02  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|.-.
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            448999999999999999999854

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=93.42  E-value=0.04  Score=55.15  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=22.8

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +++-.|+|.|+||+|||+||+.|+..
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            44568999999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.42  E-value=0.039  Score=48.85  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+-|+|+|.+|+|||||.+.|..
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            46699999999999999999874

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.40  E-value=0.034  Score=53.52  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|.-.
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            348999999999999999999854

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.40  E-value=0.043  Score=48.04  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+|+|.+|+|||||.++|..
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~   37 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHc
Confidence            356799999999999999999975

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.39  E-value=0.033  Score=55.11  Aligned_cols=24  Identities=42%  Similarity=0.527  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|.-.
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            348999999999999999999854

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=93.37  E-value=0.042  Score=59.58  Aligned_cols=26  Identities=31%  Similarity=0.402  Sum_probs=23.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....|+|+|.||+||||||+.|+..+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            45589999999999999999999875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=93.37  E-value=0.041  Score=47.89  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.++|..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHc
Confidence            345689999999999999999874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.37  E-value=0.056  Score=47.37  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...-|+|+|.+|+|||||.++|..
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~   31 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQ   31 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            456799999999999999999875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=93.35  E-value=0.045  Score=49.34  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+-|+|+|.+|+|||||.++|..
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHc
Confidence            3456799999999999999999974

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.34  E-value=0.034  Score=54.61  Aligned_cols=25  Identities=44%  Similarity=0.502  Sum_probs=21.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||.+.|...
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3448999999999999999999854

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.32  E-value=0.035  Score=54.92  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||.+.|.-.
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence            4458999999999999999999854

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=93.31  E-value=0.045  Score=53.06  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++++|.||+||||+|+.+++.+
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHh
Confidence            8899999999999999999875

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.25  E-value=0.04  Score=49.66  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.5

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +-|+|+|.+|+|||||.+.|..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999999999874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=93.20  E-value=0.051  Score=58.72  Aligned_cols=21  Identities=33%  Similarity=0.638  Sum_probs=19.8

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |+|+|.||+||||||+.|+..
T Consensus        67 vLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           67 VLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999999875

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.18  E-value=0.045  Score=48.23  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+|+|.+|+|||||.+.|..
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Confidence            456799999999999999999874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=93.17  E-value=0.038  Score=54.41  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|.-.
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            348999999999999999999754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.15  E-value=0.043  Score=48.12  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ..+-|+|+|.+|+|||||.+.|.
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHh
Confidence            34568999999999999999986

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.14  E-value=0.033  Score=53.49  Aligned_cols=23  Identities=22%  Similarity=0.353  Sum_probs=20.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .++.|+|..|||||||.+.|.-.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37889999999999999999754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=93.11  E-value=0.13  Score=54.09  Aligned_cols=46  Identities=17%  Similarity=0.121  Sum_probs=29.9

Q ss_pred             HHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          274 FTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       274 akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      +..+++.-.--++|+|++......-..+.++.++.+.++.++.=.+
T Consensus        96 ~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~  141 (456)
T 4dcu_A           96 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKL  141 (456)
T ss_dssp             HHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC
T ss_pred             HHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECc
Confidence            3344433222378899877555555678888888888887766554

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=93.10  E-value=0.049  Score=57.54  Aligned_cols=26  Identities=31%  Similarity=0.195  Sum_probs=23.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..-+|+++|..||||||+.+.|...+
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            45589999999999999999998875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.10  E-value=0.04  Score=54.26  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=21.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|.|..|||||||.+.|.-.
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3448999999999999999999854

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=93.06  E-value=0.048  Score=47.73  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+-|+|+|.+|+|||||.+.|..
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            46689999999999999999874

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=93.05  E-value=0.048  Score=48.06  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.++|..
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHc
Confidence            345699999999999999999874

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=93.04  E-value=0.054  Score=47.74  Aligned_cols=25  Identities=12%  Similarity=0.122  Sum_probs=20.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+=|+|+|.+|+|||||.+++..
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            3455689999999999999999874

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=93.02  E-value=0.041  Score=53.91  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|.-.
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            348999999999999999999854

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.02  E-value=0.049  Score=48.18  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=21.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ....-|+|+|.+|+|||||.++|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            456789999999999999998886

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=93.02  E-value=0.051  Score=53.78  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=21.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.|.++|.+|||||||.+.|....
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998764

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=92.99  E-value=0.19  Score=50.62  Aligned_cols=65  Identities=9%  Similarity=0.032  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHHHHHhhc
Q 009432          270 MLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQ  344 (535)
Q Consensus       270 llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvIe~M~kr  344 (535)
                      ..+.+.+.++.|+  .||+|-.-   ..   ..++ +......++|.+..++.+++.+|.. ..+.+.++.+..+
T Consensus       178 ~~~~V~~~~~~gk--~viLdid~---qg---~~~l-k~~~~~pi~IFI~PpS~e~L~~r~~-~r~~e~~~~~~~r  242 (292)
T 3tvt_A          178 SVASVREVAEKGK--HCILDVSG---NA---IKRL-QVAQLYPVAVFIKPKSVDSVMEMNR-RMTEEQAKKTYER  242 (292)
T ss_dssp             EHHHHHHHHHHTC--EEEECCCT---HH---HHHH-HHTTCCCEEEEECCSCHHHHHHTCT-TSCTTHHHHHHHH
T ss_pred             ehHHHHHHHHcCC--cEEEeccc---hh---hhhc-ccccccceEEEEECCCHHHHHHHHh-CCCchhHHHHHHH
Confidence            4456778889999  99998641   12   2222 2334445566666556777766654 3344444444433

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=92.99  E-value=0.049  Score=48.40  Aligned_cols=21  Identities=33%  Similarity=0.420  Sum_probs=18.7

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      =|+|+|.+|+|||||.++|..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999873

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=92.98  E-value=0.042  Score=54.77  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=21.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||.+.|.-.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3448999999999999999999854

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.95  E-value=0.051  Score=47.82  Aligned_cols=24  Identities=29%  Similarity=0.522  Sum_probs=21.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+|+|.+|+|||||.++|..
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh
Confidence            346799999999999999999874

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=92.95  E-value=0.05  Score=48.29  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=20.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.++|..
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~   32 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            45689999999999999999874

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.95  E-value=0.057  Score=49.62  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=21.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...-|+|+|.+|+|||||..+|..
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~   34 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTT   34 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            445789999999999999999985

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=92.95  E-value=0.05  Score=48.17  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...-|+|+|.+|+|||||.++|..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            456799999999999999999874

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=92.94  E-value=0.053  Score=48.74  Aligned_cols=24  Identities=25%  Similarity=0.405  Sum_probs=20.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.+.|..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhc
Confidence            345699999999999999999875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.94  E-value=0.052  Score=47.00  Aligned_cols=20  Identities=35%  Similarity=0.509  Sum_probs=18.6

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.++|..
T Consensus         3 i~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999999975

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.92  E-value=0.056  Score=52.43  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=20.5

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++++|.+|+||||+|+.+++.+
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8899999999999999999875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=92.92  E-value=0.056  Score=47.84  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=20.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.+.|..
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHh
Confidence            345699999999999999999974

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.88  E-value=0.075  Score=47.09  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+-|+|+|.+|+|||||.++|..
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~   40 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQ   40 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3456799999999999999999874

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.88  E-value=0.07  Score=48.12  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=21.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ....=|+|+|.+|+|||||.+.|..
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHh
Confidence            3456799999999999999999874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.88  E-value=0.07  Score=47.81  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=22.5

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .....-|+|+|.+|+|||||.++|..
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhc
Confidence            34567899999999999999999973

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=92.84  E-value=0.14  Score=50.12  Aligned_cols=40  Identities=18%  Similarity=0.327  Sum_probs=30.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      .++.|++.|.||+||||+|-.++..+...| ..+.++..|.
T Consensus         5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G-~~V~v~d~D~   44 (228)
T 2r8r_A            5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQG-VRVMAGVVET   44 (228)
T ss_dssp             CCEEEEEESSTTSSHHHHHHHHHHHHHHTT-CCEEEEECCC
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHCC-CCEEEEEeCC
Confidence            467799999999999999999988877664 4444555553

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.81  E-value=0.051  Score=54.67  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=21.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      --+++|+|..|||||||.+.|...
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            458999999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=92.77  E-value=0.041  Score=56.56  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=21.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+|+|+|..|||||||++.|...+
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            389999999999999999998753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=92.74  E-value=0.083  Score=47.85  Aligned_cols=26  Identities=19%  Similarity=0.180  Sum_probs=22.2

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +...+=|+|+|.+|+|||||.+++..
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence            34567799999999999999988874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=92.71  E-value=0.048  Score=53.46  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|.-.
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            348999999999999999999854

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=92.69  E-value=0.062  Score=47.81  Aligned_cols=25  Identities=28%  Similarity=0.226  Sum_probs=20.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..+=|+|+|.+|+|||||.+.|...
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHT
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhh
Confidence            3456999999999999999777643

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=92.63  E-value=0.059  Score=55.05  Aligned_cols=28  Identities=11%  Similarity=0.024  Sum_probs=24.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .+-.|+|.|.||+|||++++.+++.+.+
T Consensus        44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~   71 (318)
T 3te6_A           44 QNKLFYITNADDSTKFQLVNDVMDELIT   71 (318)
T ss_dssp             CCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4457899999999999999999988754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.60  E-value=0.06  Score=48.83  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.++|..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            35689999999999999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=92.57  E-value=0.082  Score=48.10  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.1

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      .+.+-|+|+|.+|+|||||.++|.
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            445679999999999999999986

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=92.57  E-value=0.11  Score=54.72  Aligned_cols=27  Identities=19%  Similarity=0.507  Sum_probs=24.1

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      .++|.|.|||||||+++.+...+...+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~   73 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTG   73 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence            889999999999999999998877654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=92.56  E-value=0.065  Score=47.77  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+-|+|+|.+|+|||||.++|..
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~   37 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTD   37 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            46799999999999999999875

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=92.55  E-value=0.075  Score=47.37  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ....-|+++|.+|+|||||.++|..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            4567899999999999999999873

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=92.54  E-value=0.062  Score=48.09  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.++|..
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            45699999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.53  E-value=0.052  Score=53.64  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||.+.|.-.
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            348999999999999999999854

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=92.53  E-value=0.072  Score=47.00  Aligned_cols=24  Identities=13%  Similarity=0.165  Sum_probs=20.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.++|..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            345689999999999999999874

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=92.52  E-value=0.39  Score=48.29  Aligned_cols=62  Identities=15%  Similarity=0.058  Sum_probs=38.9

Q ss_pred             CCceEEEEeC-CCCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhcC---CCCHHHHHHHhhc
Q 009432          281 GNFTIVIVDD-RNLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNVH---GFTLDDIERMAGQ  344 (535)
Q Consensus       281 G~f~~VIVDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNih---~VpeEvIe~M~kr  344 (535)
                      |.+.+||||. -..+......+.+...+..-.+++|.++. .+    .++..| .-   ..+.+.+..+..+
T Consensus        81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~-~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~  150 (305)
T 2gno_A           81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR-RWHYLLPTIKSR-VFRVVVNVPKEFRDLVKE  150 (305)
T ss_dssp             SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES-CGGGSCHHHHTT-SEEEECCCCHHHHHHHHH
T ss_pred             CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC-ChHhChHHHHce-eEeCCCCCHHHHHHHHHH
Confidence            4456999996 34456666778888887766666666652 32    356667 32   5666666665544

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=92.45  E-value=0.95  Score=46.69  Aligned_cols=29  Identities=17%  Similarity=0.212  Sum_probs=23.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ..+-|+++|.+++|||||..+|.....+.
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~   38 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAE   38 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHS
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhc
Confidence            34679999999999999999998754333

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=92.45  E-value=0.055  Score=55.83  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..+++|.|.||+||||||.+++..
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh
Confidence            346789999999999999999864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=92.44  E-value=0.05  Score=55.15  Aligned_cols=24  Identities=33%  Similarity=0.472  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|+|..|||||||++.|...
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCchHHHHHHHHHcC
Confidence            348999999999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=92.42  E-value=0.074  Score=47.53  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=20.8

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+..-|+|+|.+|+|||||.++|..
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999999974

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=92.41  E-value=0.066  Score=48.09  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.++|..
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999875

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.40  E-value=0.097  Score=46.90  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=21.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+|+|.+|+|||||.+.|..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            456799999999999999999874

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=92.36  E-value=0.086  Score=47.22  Aligned_cols=24  Identities=17%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+|+|.+|+|||||.++|..
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhc
Confidence            456689999999999999999875

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.31  E-value=0.092  Score=47.50  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=21.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+=|+|+|.+|+|||||.++|..
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3456799999999999999999875

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.30  E-value=0.068  Score=48.21  Aligned_cols=24  Identities=21%  Similarity=0.265  Sum_probs=20.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .+=|+|+|.+|+|||||.++|...
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcC
Confidence            346899999999999999998854

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=92.29  E-value=0.066  Score=55.65  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|.|.+|||||||.+.|+-.
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcC
Confidence            3448999999999999999999864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=92.25  E-value=0.069  Score=48.68  Aligned_cols=24  Identities=17%  Similarity=0.283  Sum_probs=21.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.++|..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHh
Confidence            456799999999999999999885

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=92.18  E-value=0.48  Score=51.35  Aligned_cols=35  Identities=3%  Similarity=0.046  Sum_probs=27.3

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      ++|||++.....+-..++..++.++.++.++.=.+
T Consensus       110 llVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~  144 (528)
T 3tr5_A          110 LMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKM  144 (528)
T ss_dssp             EEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            88999988766666778889999999876665444

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=92.15  E-value=0.072  Score=48.18  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=20.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.+.|..
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECcCCCCHHHHHHHHhc
Confidence            345699999999999999999874

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=92.12  E-value=0.049  Score=62.26  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=20.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +.=|+|.|+||+|||.+|++|+..
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e  534 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANE  534 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCchHHHHHHHHH
Confidence            345789999999999999999964

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=92.12  E-value=0.087  Score=51.50  Aligned_cols=23  Identities=30%  Similarity=0.291  Sum_probs=21.2

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +|+|.|.+|+|||||++.+.+.+
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=92.11  E-value=0.095  Score=47.12  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ...-|+|+|.+|+|||||.++|.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~   37 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLA   37 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHh
Confidence            45679999999999999999987

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=92.11  E-value=0.087  Score=49.86  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=21.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ....-|+|+|.+|+|||||.+.|..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcC
Confidence            4556799999999999999999874

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=92.08  E-value=0.08  Score=47.71  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.++|..
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhc
Confidence            345699999999999999999874

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=92.05  E-value=0.085  Score=52.69  Aligned_cols=22  Identities=27%  Similarity=0.626  Sum_probs=20.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      -|+|+|.||+|||++|+.|...
T Consensus        27 ~vLi~Ge~GtGKt~lAr~i~~~   48 (304)
T 1ojl_A           27 TVLIHGDSGTGKELVARALHAC   48 (304)
T ss_dssp             CEEEESCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCchHHHHHHHHHHh
Confidence            5788999999999999999875

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=92.04  E-value=0.074  Score=56.40  Aligned_cols=24  Identities=38%  Similarity=0.488  Sum_probs=21.2

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      -++|+|.||+|||++|+.|+..+.
T Consensus       203 ~~LL~G~pG~GKT~la~~la~~l~  226 (468)
T 3pxg_A          203 NPVLIGEPGVGKTAIAEGLAQQII  226 (468)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHH
Confidence            458899999999999999998764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=92.03  E-value=0.095  Score=47.03  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+|+|.+|+|||||.++|..
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            456799999999999999999874

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=92.02  E-value=0.082  Score=47.64  Aligned_cols=25  Identities=16%  Similarity=0.268  Sum_probs=21.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+=|+|+|.+|+|||||.++|..
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~   45 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSK   45 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhc
Confidence            3456799999999999999999875

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=92.02  E-value=0.094  Score=47.41  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+|+|.+|+|||||.+.|..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~   30 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVN   30 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHc
Confidence            456799999999999999999875

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=92.00  E-value=0.076  Score=48.24  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=19.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..-|+|+|.+|+|||||.++|..
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999999874

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=91.99  E-value=0.083  Score=53.20  Aligned_cols=26  Identities=27%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             cEEEEE--EccCCChHHHHHHHHHHHHH
Q 009432          183 HFAIIL--RGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       183 ~~LIIL--~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ..+++|  +|.+|+|||||++.+.+.+.
T Consensus        50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~   77 (412)
T 1w5s_A           50 DVNMIYGSIGRVGIGKTTLAKFTVKRVS   77 (412)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence            447777  99999999999999987654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=91.99  E-value=0.088  Score=51.43  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=20.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +++|+|.+|+|||||++.+.+.
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            8899999999999999999865

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=91.94  E-value=0.094  Score=48.19  Aligned_cols=25  Identities=12%  Similarity=0.137  Sum_probs=20.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+.+-|+|+|.+|+|||||.+++..
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHh
Confidence            4567899999999999999999874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=91.92  E-value=0.079  Score=54.96  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=21.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|.|.+|||||||.+.|+-.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCC
Confidence            3448999999999999999999854

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.91  E-value=0.081  Score=48.09  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+-|+|+|.+|+|||||...|..
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3456799999999999999999874

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=91.90  E-value=0.21  Score=47.05  Aligned_cols=36  Identities=14%  Similarity=-0.043  Sum_probs=27.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEE
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIH  218 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIl  218 (535)
                      ...|++++|.+||||||.+-.++.++...| ..+.++
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g-~kV~v~   42 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAK-QKIQVF   42 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEE
Confidence            357999999999999999988877765543 444444

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.89  E-value=0.095  Score=46.20  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=21.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.+++..
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            456699999999999999999875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=91.88  E-value=0.079  Score=54.88  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|.|.+|||||||.+.|+-.
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            348999999999999999999854

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=91.88  E-value=0.08  Score=48.40  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.++|..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh
Confidence            345689999999999999999863

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=91.86  E-value=0.08  Score=55.19  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=21.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|.+|||||||.+.|.-.
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcC
Confidence            3448999999999999999999854

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=91.85  E-value=0.069  Score=53.56  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||.+.|.-.
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3448999999999999999999754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=91.85  E-value=0.08  Score=55.45  Aligned_cols=25  Identities=28%  Similarity=0.503  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|.|.+|||||||.|.|+-.
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcC
Confidence            3448999999999999999999864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=91.83  E-value=0.052  Score=55.25  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +|+++|.+|||||||++.|...+
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999998753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=91.83  E-value=0.11  Score=47.71  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ..-|+|+|.+|+|||||.++|.
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHh
Confidence            4468999999999999999986

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.82  E-value=0.11  Score=46.97  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+=|+|+|.+|+|||||.++|..
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHh
Confidence            3456799999999999999999874

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=91.81  E-value=0.083  Score=48.49  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.+.|..
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHhc
Confidence            45699999999999999999873

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=91.79  E-value=0.083  Score=54.86  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|.|.+|||||||.+.|+-.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcC
Confidence            348999999999999999999854

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=91.77  E-value=0.084  Score=48.06  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.+.|..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            45689999999999999999874

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.75  E-value=0.089  Score=48.73  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=20.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.++|..
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            45689999999999999999875

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=91.74  E-value=0.082  Score=47.49  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=20.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+|+|.+|+|||||.++|..
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~   43 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKP   43 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=91.74  E-value=0.054  Score=48.03  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=10.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+-|+|+|.+|+|||||.+.|..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45699999999999999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=91.71  E-value=0.072  Score=54.97  Aligned_cols=24  Identities=17%  Similarity=0.400  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|.|.+|||||||.+.|+-.
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCccHHHHHHHHHcC
Confidence            348999999999999999999854

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=91.70  E-value=0.11  Score=47.31  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+-|+|+|.+|+|||||.+.|..
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHh
Confidence            3457799999999999999999874

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=91.68  E-value=0.084  Score=47.84  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=20.0

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.++|..
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            45589999999999999999863

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=91.68  E-value=0.34  Score=50.64  Aligned_cols=46  Identities=17%  Similarity=0.121  Sum_probs=29.2

Q ss_pred             HHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          274 FTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       274 akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      +..+++.-.--++|+|++.........+.++.++.+.++.++.-.+
T Consensus        76 ~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~  121 (436)
T 2hjg_A           76 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKL  121 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECC
T ss_pred             HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence            3444443332367899877544445567777888888887766655

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=91.68  E-value=0.086  Score=54.84  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|.|.+|||||||.+.|+-.
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcC
Confidence            348999999999999999999854

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=91.67  E-value=0.08  Score=54.77  Aligned_cols=37  Identities=27%  Similarity=0.266  Sum_probs=19.9

Q ss_pred             chhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHH
Q 009432          167 NALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       167 ~~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      .|+.-|+...+.. .+..=|+|.|.+|||||||+|++.
T Consensus        18 ~Id~~l~~~~~~~-~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           18 MIDRNLREDGERS-ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             --------------CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHHHHhHHHh-cCccEEEEECCCCCcHHHHHHHHH
Confidence            3555555443322 234557888999999999999995

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=91.66  E-value=0.086  Score=48.31  Aligned_cols=23  Identities=35%  Similarity=0.530  Sum_probs=20.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ..+-|+|+|.+|+|||||.++|.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            45679999999999999999985

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=91.64  E-value=0.22  Score=50.81  Aligned_cols=41  Identities=24%  Similarity=0.197  Sum_probs=33.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ..+.++++.|-.|.||||+|..|+..+... |..+.+++.|-
T Consensus        24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~D~   64 (349)
T 3ug7_A           24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK-GLKVVIVSTDP   64 (349)
T ss_dssp             CSCEEEEEECSSSTTHHHHHHHHHHHHHHS-SCCEEEEECCT
T ss_pred             CCCEEEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence            456799999999999999999999888776 45566667663

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=91.60  E-value=0.089  Score=54.81  Aligned_cols=25  Identities=32%  Similarity=0.495  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|.|.+|||||||.+.|+-.
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            3458999999999999999999854

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=91.59  E-value=0.094  Score=48.62  Aligned_cols=24  Identities=17%  Similarity=0.283  Sum_probs=21.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.++|..
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~   50 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAK   50 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999975

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=91.56  E-value=0.09  Score=47.06  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ...+-|+|+|.+|+|||||..+|.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999999985

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=91.54  E-value=0.063  Score=58.02  Aligned_cols=22  Identities=41%  Similarity=0.576  Sum_probs=20.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      =|+|+|.||+|||+||+.|...
T Consensus        43 ~VLL~GpPGtGKT~LAraLa~~   64 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIARRLKFA   64 (500)
T ss_dssp             EEEEECCSSSSHHHHHHHGGGG
T ss_pred             eeEeecCchHHHHHHHHHHHHH
Confidence            4788999999999999999865

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.53  E-value=0.097  Score=48.00  Aligned_cols=23  Identities=13%  Similarity=0.268  Sum_probs=20.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +.-|+|+|.+|+|||||.+.|..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHhc
Confidence            45699999999999999999875

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=91.53  E-value=0.096  Score=47.96  Aligned_cols=24  Identities=29%  Similarity=0.373  Sum_probs=20.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...-|+|+|.+|+|||||..+|..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~   29 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLT   29 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            345789999999999999999975

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.52  E-value=0.087  Score=56.54  Aligned_cols=19  Identities=21%  Similarity=0.544  Sum_probs=18.1

Q ss_pred             EEEEEccCCChHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKML  203 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L  203 (535)
                      +++|+|.+|||||||++.+
T Consensus        41 ~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            8999999999999999994

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=91.48  E-value=0.091  Score=55.07  Aligned_cols=25  Identities=32%  Similarity=0.308  Sum_probs=21.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|.+|||||||.+.|+-.
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            4458999999999999999999854

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.47  E-value=0.11  Score=46.53  Aligned_cols=25  Identities=24%  Similarity=0.498  Sum_probs=21.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ....-|+|+|.+|+|||||.++|..
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            4556799999999999999999863

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=91.47  E-value=0.099  Score=47.91  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+-|+|+|.+|+|||||.++|..
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhh
Confidence            45699999999999999999864

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.44  E-value=0.12  Score=46.74  Aligned_cols=25  Identities=16%  Similarity=0.134  Sum_probs=20.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+-|+|+|.+|+|||||.+.|..
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3456799999999999999999863

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=91.43  E-value=0.55  Score=50.89  Aligned_cols=35  Identities=3%  Similarity=0.068  Sum_probs=26.7

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      ++|||++.....+...++.+++..+.++.++.-.+
T Consensus       110 IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~  144 (529)
T 2h5e_A          110 LMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKL  144 (529)
T ss_dssp             EEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECT
T ss_pred             EEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCc
Confidence            88999988666666788889998899875554444

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=91.35  E-value=0.1  Score=52.25  Aligned_cols=23  Identities=48%  Similarity=0.538  Sum_probs=20.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+++|+|.+|+|||||.+.|. .+
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hh
Confidence            488999999999999999998 53

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=91.33  E-value=0.12  Score=49.43  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ....-|+|+|.+|+|||||...|..
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhC
Confidence            3457799999999999999999874

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=91.26  E-value=0.13  Score=57.40  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .-|+|+|.||+|||++|+.|++.+
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHh
Confidence            368999999999999999999875

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=91.24  E-value=0.11  Score=47.43  Aligned_cols=24  Identities=13%  Similarity=0.218  Sum_probs=20.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.+.|..
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            345699999999999999999875

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.20  E-value=0.11  Score=46.64  Aligned_cols=23  Identities=13%  Similarity=0.202  Sum_probs=20.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+-|+|+|.+|+|||||.++|..
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~   40 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYAN   40 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            45689999999999999999975

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=91.20  E-value=0.071  Score=55.06  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=21.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|.|.+|||||||.+.|+-.
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            3448999999999999999999854

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=91.19  E-value=1.3  Score=45.78  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=22.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .+-|+++|.+++|||||..+|......
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~   29 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAE   29 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhh
Confidence            356899999999999999999875433

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=91.18  E-value=0.13  Score=47.54  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+-|+|+|.+|+|||||.++|..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            456799999999999999999874

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=91.17  E-value=0.15  Score=46.52  Aligned_cols=24  Identities=13%  Similarity=0.135  Sum_probs=21.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+=|+|+|.+|+|||||.+.|..
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=91.16  E-value=0.14  Score=47.92  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...-|+|+|.+|+|||||..+|..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456799999999999999999873

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=91.06  E-value=0.088  Score=56.24  Aligned_cols=31  Identities=13%  Similarity=0.276  Sum_probs=24.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      ...+++|+|..|||||||+|.|+-.+...+|
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            4457889999999999999999876544334

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=91.06  E-value=0.14  Score=56.11  Aligned_cols=28  Identities=39%  Similarity=0.571  Sum_probs=23.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      -++++.|.||+||||+++.|...+...+
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g  232 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAESLG  232 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            3788999999999999999988776553

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=91.06  E-value=0.19  Score=51.41  Aligned_cols=34  Identities=35%  Similarity=0.388  Sum_probs=25.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEe
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHS  219 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS  219 (535)
                      -++++|.+||||||+++.|...+...+ ..+.++.
T Consensus        37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~-~~~~~~D   70 (392)
T 4ag6_A           37 NWTILAKPGAGKSFTAKMLLLREYMQG-SRVIIID   70 (392)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred             ceEEEcCCCCCHHHHHHHHHHHHHHCC-CEEEEEe
Confidence            356789999999999999987765544 3444443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=91.04  E-value=0.11  Score=47.39  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..-|+|+|.+|+|||||..++..
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35699999999999999999874

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=90.98  E-value=0.25  Score=49.66  Aligned_cols=39  Identities=21%  Similarity=0.232  Sum_probs=32.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      +.++++.|-.|.||||+|..|+..+.+. |..+.+++.|-
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~D~   52 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARS-GKKTLVISTDP   52 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEECCS
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            6799999999999999999999888776 45566667763

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=90.97  E-value=0.11  Score=53.88  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=20.0

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+++|+|.+|+|||||.+.|..
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHC
T ss_pred             CEEEEECCCCccHHHHHHHHhc
Confidence            4789999999999999999984

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=90.91  E-value=0.14  Score=49.82  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..-|+|+|.||+|||||.++|..
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g   25 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTG   25 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            35689999999999999999973

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=90.87  E-value=0.11  Score=51.71  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.0

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .++.|+|.+|||||||.+.|..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHST
T ss_pred             CeEEEECCCCCcHHHHHHHhcc
Confidence            4889999999999999999974

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=90.77  E-value=0.11  Score=56.74  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=21.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .++|+|.||+||||||+.|...+
T Consensus        62 ~vll~Gp~GtGKTtlar~ia~~l   84 (604)
T 3k1j_A           62 HVLLIGEPGTGKSMLGQAMAELL   84 (604)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHTS
T ss_pred             EEEEEeCCCCCHHHHHHHHhccC
Confidence            78999999999999999998753

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=90.75  E-value=0.13  Score=52.68  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..-|+++|.+|+||||+|-.|.+
T Consensus       147 g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=90.73  E-value=0.36  Score=52.26  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=25.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ..++|||+-|.-||||+|.++.|.+.+.
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~   68 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMD   68 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcC
Confidence            4679999999999999999999998764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=90.66  E-value=0.085  Score=57.09  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=21.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+|+++|.+||||||+.+.|...+
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3468999999999999999998653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=90.65  E-value=0.098  Score=48.10  Aligned_cols=35  Identities=14%  Similarity=0.059  Sum_probs=25.3

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      ++|+|++.........++++++..+.++++|.-.+
T Consensus       120 i~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~  154 (223)
T 4dhe_A          120 ILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKC  154 (223)
T ss_dssp             EEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECG
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecc
Confidence            78999987544555667778887888877666554

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=90.63  E-value=2  Score=43.02  Aligned_cols=65  Identities=6%  Similarity=-0.011  Sum_probs=35.8

Q ss_pred             HHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHHHHHhhcc
Q 009432          271 LKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQW  345 (535)
Q Consensus       271 lk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvIe~M~krf  345 (535)
                      .+.+.+.++.|+  .||+|..-   .   ...++....-++ ++|++..++.+++.+ -....+++.|+++..+.
T Consensus       184 ~~~V~~~~~~G~--~vildid~---~---g~~~l~~~~~~p-i~IfI~pps~~~L~~-L~~R~t~~~i~~rl~~a  248 (295)
T 1kjw_A          184 VQSVREVAEQGK--HCILDVSA---N---AVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITEEQARKAFDRA  248 (295)
T ss_dssp             HHHHHHHHHTTC--EEEECCCT---T---HHHHHHHTTCCC-EEEEECCSSHHHHHH-HCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC--eEEEEeCH---H---HHHHHHhcccCC-eEEEEECCCHHHHHH-HHhcCCHHHHHHHHHHH
Confidence            345677889999  99998531   1   111222222234 456665445666544 22344667776666554

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=90.58  E-value=0.12  Score=57.75  Aligned_cols=24  Identities=38%  Similarity=0.488  Sum_probs=21.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      =|+|+|.||+|||++|+.|+..+.
T Consensus       203 ~vLL~G~pGtGKT~la~~la~~l~  226 (758)
T 3pxi_A          203 NPVLIGEPGVGKTAIAEGLAQQII  226 (758)
T ss_dssp             EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHh
Confidence            378999999999999999998763

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=90.56  E-value=0.2  Score=48.54  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=20.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...-|+++|.||+|||||..+|..
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g   48 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHC
Confidence            445799999999999999999974

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=90.53  E-value=0.14  Score=47.59  Aligned_cols=61  Identities=10%  Similarity=0.084  Sum_probs=37.7

Q ss_pred             EEEEeCCCCCHHH--HHHHHHHHhhc--CceEEEEEEecCCHH-------HHHHhhcCCCCHHHHHHHhhccc
Q 009432          285 IVIVDDRNLRVAD--FAQFWATAKRS--GYEVYILEATYKDPA-------GCAARNVHGFTLDDIERMAGQWE  346 (535)
Q Consensus       285 ~VIVDaTN~~~~~--R~~f~~LAr~~--G~~V~vIe~~~~d~e-------~ci~RNih~VpeEvIe~M~krfE  346 (535)
                      ++|+|.++...-.  ...|+...+.+  +.++++|-..+ |..       .+.......++.+.++.+.+.+.
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~-Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  174 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKT-DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG  174 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECG-GGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECh-hhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence            8899998765432  34566666655  66776666555 432       12223345788888888877664

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=90.53  E-value=0.13  Score=46.68  Aligned_cols=23  Identities=43%  Similarity=0.492  Sum_probs=19.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.+.+..
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999887653

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=90.51  E-value=0.77  Score=48.77  Aligned_cols=26  Identities=15%  Similarity=0.204  Sum_probs=22.2

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHc
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      -+.|.|.+|+|||||++.|......+
T Consensus       176 r~~IvG~sG~GKTtLl~~Iar~i~~~  201 (422)
T 3ice_A          176 RGLIVAPPKAGKTMLLQNIAQSIAYN  201 (422)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCChhHHHHHHHHHHhhc
Confidence            67789999999999999998876544

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=90.49  E-value=0.2  Score=51.16  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=21.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..-|+++|.+|+||||+|..|.++
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            457999999999999999999864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=90.49  E-value=0.15  Score=53.92  Aligned_cols=24  Identities=33%  Similarity=0.502  Sum_probs=21.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+|.|+|.+|||||||.+.|..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            455899999999999999999985

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=90.42  E-value=0.18  Score=56.33  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=21.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      -|+|+|.||+|||++|+.|++.+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999875

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=90.40  E-value=0.41  Score=48.55  Aligned_cols=28  Identities=21%  Similarity=0.326  Sum_probs=25.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ..++|||+-|.-||||.+.++.|.+.+.
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ld  100 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMD  100 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcC
Confidence            4689999999999999999999998753

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=90.31  E-value=0.14  Score=51.02  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=20.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...|+|+|.||+|||||.++|..
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            44799999999999999999983

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=90.28  E-value=0.87  Score=49.53  Aligned_cols=38  Identities=11%  Similarity=0.118  Sum_probs=30.0

Q ss_pred             HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432          279 DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEAT  318 (535)
Q Consensus       279 k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~  318 (535)
                      -+|.  ++|||++---..+-...|+.|++++.++.++.=.
T Consensus       124 ~DgA--vlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK  161 (548)
T 3vqt_A          124 VDSA--LVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNK  161 (548)
T ss_dssp             CSEE--EEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCce--EEEeecCCCcccccHHHHHHHHHhCCceEEEEec
Confidence            4576  9999998877777778889999999998555433

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=90.28  E-value=0.28  Score=54.95  Aligned_cols=69  Identities=6%  Similarity=0.003  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHHHHHhhc
Q 009432          266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQ  344 (535)
Q Consensus       266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvIe~M~kr  344 (535)
                      +|..-.+.+++.++.|+  .||+|-.   .   ....++....-+. ++|++..++.+++.+ -....+++.|+++..+
T Consensus       605 ~YGt~~~~v~~~~~~g~--~~ildi~---~---~~~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~t~~~~~~rl~~  673 (721)
T 2xkx_A          605 LYGTSVQSVREVAEQGK--HCILDVS---A---NAVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITEEQARKAFDR  673 (721)
T ss_pred             cceeeHHHHHHHHHCCC--cEEEeCC---H---HHHHHHHhcccCC-EEEEEeCCcHHHHHH-HhccCCHHHHHHHHHH
Confidence            55556667888899999  9999862   2   2222222222234 455555445555443 2223355666555443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=90.26  E-value=0.34  Score=50.68  Aligned_cols=114  Identities=14%  Similarity=0.115  Sum_probs=0.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      .|+|+|.|++|||||..+|...-...-...+-+ ..|-+.....-                ...-..=+..-.+......
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~-T~d~~~~~~~~----------------~~~~~~l~DT~G~~~~~~~   65 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGV-TRDPVQDTVEW----------------YGKTFKLVDTCGVFDNPQD   65 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE----------------TTEEEEEEECTTTTSSGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCC-ccceeeEEEEE----------------CCeEEEEEECCCccccccc


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEE
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYIL  315 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vI  315 (535)
                      .....+...+..+++.-.--++|+|++......-..+.++.++.+.++.++
T Consensus        66 ~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv  116 (439)
T 1mky_A           66 IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILV  116 (439)
T ss_dssp             CCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEE
T ss_pred             hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEE

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=90.24  E-value=0.31  Score=45.57  Aligned_cols=42  Identities=12%  Similarity=-0.050  Sum_probs=31.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      ..+++.|..+-.|+||||+|..|+..+....|..+.++..|-
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~   44 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISL   44 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCT
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence            346677778889999999999999988765244555666653

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=90.23  E-value=0.17  Score=50.89  Aligned_cols=24  Identities=25%  Similarity=0.484  Sum_probs=21.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+++.|.+|+||||+|+.+++.+
T Consensus        25 ~a~L~~G~~G~GKt~~a~~la~~l   48 (334)
T 1a5t_A           25 HALLIQALPGMGDDALIYALSRYL   48 (334)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eeEEEECCCCchHHHHHHHHHHHH
Confidence            478999999999999999999876

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=90.17  E-value=0.17  Score=54.06  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=20.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+|+|+|.+|.||||||+.+..
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Confidence            345899999999999999999864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=90.10  E-value=1  Score=49.98  Aligned_cols=35  Identities=17%  Similarity=0.280  Sum_probs=26.0

Q ss_pred             cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEE
Q 009432          280 EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILE  316 (535)
Q Consensus       280 ~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe  316 (535)
                      ++.  ++|+|++.....+...++.++++.+.++.++.
T Consensus        99 d~~--ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~  133 (665)
T 2dy1_A           99 DAA--LVAVSAEAGVQVGTERAWTVAERLGLPRMVVV  133 (665)
T ss_dssp             SEE--EEEEETTTCSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcE--EEEEcCCcccchhHHHHHHHHHHccCCEEEEe
Confidence            454  88999877655666678888888898876653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=90.06  E-value=0.15  Score=47.34  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .+=|+|+|.+|+|||||.+.|..
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~   35 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTK   35 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECcCCCCHHHHHHHHhc
Confidence            35699999999999999999874

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=90.05  E-value=1.2  Score=43.89  Aligned_cols=37  Identities=14%  Similarity=-0.221  Sum_probs=25.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEE
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIH  218 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIl  218 (535)
                      ....|.+++|.+||||||.+-.++.+.... |..+.++
T Consensus        17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~   53 (234)
T 2orv_A           17 TRGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVI   53 (234)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEE
Confidence            446799999999999999887666555443 3344333

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=89.99  E-value=0.17  Score=49.33  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ...+-|+|+|.+|+|||||...|.
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHS
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHh
Confidence            345679999999999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=89.98  E-value=0.13  Score=54.76  Aligned_cols=20  Identities=35%  Similarity=0.448  Sum_probs=18.8

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |.|+|.+|||||||.+.|..
T Consensus        45 vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999999974

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=89.98  E-value=0.29  Score=49.37  Aligned_cols=40  Identities=20%  Similarity=0.073  Sum_probs=32.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCc
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDD  222 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DD  222 (535)
                      .+.++|+.|-.|.||||+|..|+..+.+. |..+.+++.|-
T Consensus        18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~-G~rVllvD~D~   57 (329)
T 2woo_A           18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKV-RSSVLLISTDP   57 (329)
T ss_dssp             TCCEEEEECSSSSSHHHHHHHHHHHHHTS-SSCEEEEECCT
T ss_pred             CCEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEEEEECCC
Confidence            35688999999999999999999988765 45566667663

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=89.90  E-value=0.071  Score=48.03  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=6.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..+-|+|+|.+|+|||||.+.|...
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEC-----------------
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999988753

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=89.73  E-value=0.36  Score=50.43  Aligned_cols=65  Identities=6%  Similarity=0.079  Sum_probs=35.4

Q ss_pred             HHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhhcc
Q 009432          272 KAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAGQW  345 (535)
Q Consensus       272 k~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~krf  345 (535)
                      +.+++.++.|+  .||+|-   ...-.++   +-...-+. ++|++..++.+++.+|...  ..+++.+++|...-
T Consensus       280 ~~V~~~~~~Gk--~~iLdI---d~qg~~~---l~~~~~~p-~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a  346 (391)
T 3tsz_A          280 HTIKQIIDQDK--HALLDV---TPNAVDR---LNYAQWYP-IVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERS  346 (391)
T ss_dssp             HHHHHHHTTTC--EEEECC---CHHHHHH---HHHTTCCC-EEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHH
T ss_pred             HHHHHHHHcCC--EEEEEe---CHHHHHH---HHhCCCCC-EEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            45677889999  999996   2222222   22222233 4566654566666543222  23455666665443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=89.73  E-value=0.16  Score=53.37  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ....|.|+|+||+|||||.+.|..
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            356899999999999999999985

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=89.72  E-value=0.96  Score=50.51  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=27.8

Q ss_pred             HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          279 DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       279 k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      .++.  ++|||++......-..++..+++++.++.++.=.+
T Consensus       101 aD~~--ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKi  139 (691)
T 1dar_A          101 LDGA--IVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKM  139 (691)
T ss_dssp             CSEE--EEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CCEE--EEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECC
Confidence            3455  89999987665555567778888898886664444

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=89.70  E-value=0.19  Score=45.03  Aligned_cols=25  Identities=24%  Similarity=0.131  Sum_probs=21.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +-+.+++|..||||||+..+|.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3488999999999999999987544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=89.69  E-value=0.2  Score=49.09  Aligned_cols=24  Identities=33%  Similarity=0.448  Sum_probs=21.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +++-|+|+|.+|+|||||..+|..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g   25 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTG   25 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhC
Confidence            356799999999999999999973

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=89.68  E-value=1.9  Score=50.12  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=19.4

Q ss_pred             cEEEEEEccCCChHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKML  203 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L  203 (535)
                      ..+++|+|+.|||||||.|.+
T Consensus       662 g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            458999999999999999998

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=89.66  E-value=0.19  Score=49.54  Aligned_cols=23  Identities=30%  Similarity=0.454  Sum_probs=20.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..-|+|+|.||+|||||.++|..
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g   25 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITG   25 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            35689999999999999999973

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=89.58  E-value=1.5  Score=41.93  Aligned_cols=125  Identities=13%  Similarity=0.064  Sum_probs=0.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhh---------
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVME---------  255 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~e---------  255 (535)
                      +|++.+-+|.||||.|-.++-+...+ |..+.++.-.-=.....+                 ..+.+++ .         
T Consensus        30 ~i~v~tG~GkGKTTaA~GlalRA~g~-G~rV~~vQF~Kg~~~~gE-----------------~~~l~~L-~v~~~~~g~g   90 (196)
T 1g5t_A           30 IIIVFTGNGKGKTTAAFGTAARAVGH-GKNVGVVQFIKGTWPNGE-----------------RNLLEPH-GVEFQVMATG   90 (196)
T ss_dssp             CEEEEESSSSCHHHHHHHHHHHHHHT-TCCEEEEESSCCSSCCHH-----------------HHHHGGG-TCEEEECCTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCCCCccH-----------------HHHHHhC-CcEEEEcccc


Q ss_pred             ccCch---HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCC----CHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHh
Q 009432          256 YCYEP---EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNL----RVADFAQFWATAKRSGYEVYILEATYKDPAGCAAR  328 (535)
Q Consensus       256 y~y~~---e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~----~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~R  328 (535)
                      |.++.   +......+..+..+++.+..+.+.+||+|-.++    ..-...+++++....--...+|.---..++.+++.
T Consensus        91 f~~~~~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~  170 (196)
T 1g5t_A           91 FTWETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL  170 (196)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred             cccCCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=89.58  E-value=0.18  Score=49.12  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=0.0

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ..+..-|+|+|.||+|||||..+|.
T Consensus         2 ~~~~~kI~lvG~~nvGKTsL~n~l~   26 (258)
T 3a1s_A            2 PLHMVKVALAGCPNVGKTSLFNALT   26 (258)
T ss_dssp             -CEEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHH

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=89.56  E-value=0.17  Score=56.32  Aligned_cols=30  Identities=30%  Similarity=0.196  Sum_probs=0.0

Q ss_pred             CCCCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.+..+.-++|+|.||+||||+|+.|+..+
T Consensus       202 l~~~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          202 LCRRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             HTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HhccCCCCeEEEcCCCCCHHHHHHHHHHHH

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=89.55  E-value=0.17  Score=54.95  Aligned_cols=20  Identities=35%  Similarity=0.493  Sum_probs=0.0

Q ss_pred             EEEEEccCCChHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ++.|+|..|||||||.+.|.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~   68 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILA   68 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	535
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	7e-09
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	3e-06
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	5e-06
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	7e-04
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	0.004

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 52.8 bits (125), Expect = 7e-09
 Identities = 24/166 (14%), Positives = 39/166 (23%), Gaps = 29/166 (17%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRS 245
           I+  G PGSGKS  A+      +        I+  D                      R 
Sbjct: 5   ILTIGCPGSGKSTWAREF----IAKNPGFYNINRDD---------------------YRQ 39

Query: 246 KKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATA 305
                +   EY Y  + E              L  G+    ++        +    W T 
Sbjct: 40  SIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETF 99

Query: 306 KRSGYEVYILEATYKDPAGC----AARNVHGFTLDDIERMAGQWEE 347
            +        +             + R      +D +  M     E
Sbjct: 100 AKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMRE 145

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 9/89 (10%), Positives = 24/89 (26%), Gaps = 3/89 (3%)

Query: 177 RATRPDHFAIILRGLPGSGKSYIAKML---RDLEVENGGDAPRIHSMDDYFMTEVEKVED 233
               P+   ++  G PG+GKS   +           N                 + + + 
Sbjct: 8   SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKR 67

Query: 234 SDVSKSSGSLRSKKPVTKMVMEYCYEPEM 262
             +  ++  + S+    +   +       
Sbjct: 68  VVIDNTNPDVPSRARYIQCAKDAGVPCRC 96

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 16/131 (12%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRS 245
           I++ GLP  GK+YI+K L       G      +    Y    V+  +  +          
Sbjct: 5   IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV-GQYRRDMVKTYKSFE---------- 53

Query: 246 KKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATA 305
                  + +     ++ +    + L    + L E    + + D  N      A  +   
Sbjct: 54  -----FFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFG 108

Query: 306 KRSGYEVYILE 316
           +++GY+ + +E
Sbjct: 109 EQNGYKTFFVE 119

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 24/172 (13%), Positives = 40/172 (23%), Gaps = 21/172 (12%)

Query: 186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRS 245
           IIL G   +GKS I + L+ +        P +    D  +  +     S           
Sbjct: 6   IILNGGSSAGKSGIVRCLQSVL-----PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADG 60

Query: 246 KKPVTKMVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATA 305
                              A   +  +        G   I+         A         
Sbjct: 61  GV----------SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVG 110

Query: 306 KRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEEAPTLYLQLDI 357
                 V +      D A    R       D +  MA +        ++ D+
Sbjct: 111 DLDVLWVGV----RCDGAVAEGRETAR--GDRVAGMAAKQAYVVHEGVEYDV 156

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 179 TRPDHFAIILRGLPGSGKSYIAKML 203
           T  DH   +L G+ GSGKS +A  +
Sbjct: 2   TNHDHHIYVLMGVSGSGKSAVASEV 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	535
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.83
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.77
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.63
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.52
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.37
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.37
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.37
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.26
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.22
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.09
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.01
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.93
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.69
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.68
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.66
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.64
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.64
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.6
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.6
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.56
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.54
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.53
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.47
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.38
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.37
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.32
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.31
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.3
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.26
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.22
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.16
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.11
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.06
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.01
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.97
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.95
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.92
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.92
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.89
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.89
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.83
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.81
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.8
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.78
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.73
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.72
d1okkd2	207	GTPase domain of the signal recognition particle r	97.71
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.67
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.67
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.62
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.6
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.58
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.56
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.51
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.45
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.31
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.22
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.21
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.18
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.18
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.13
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.03
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.01
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.0
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.93
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.87
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.78
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	96.75
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.73
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.71
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.7
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.63
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.62
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.62
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.51
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.51
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.42
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.4
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.39
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.37
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.2
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.14
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.09
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.97
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.91
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.85
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.82
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.78
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.68
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.67
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.65
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.65
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.34
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.31
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.2
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.11
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.01
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.96
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.84
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.83
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.82
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.82
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.77
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.75
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.72
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.72
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.7
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.67
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.66
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.66
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.66
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.64
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.55
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.49
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.48
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.47
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.36
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.23
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.19
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.15
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.13
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.1
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	93.95
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.93
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	93.93
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.91
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.9
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.8
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.8
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.76
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.73
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.67
d2awna2	232	Maltose transport protein MalK, N-terminal domain	93.66
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.62
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.6
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.56
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.52
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.52
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.49
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.47
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.46
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.43
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.42
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.4
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.39
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.29
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	93.28
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.25
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.24
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.21
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.21
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	93.15
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	93.12
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.11
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.1
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.09
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	93.07
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.07
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.03
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.93
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.86
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	92.85
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.84
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.82
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.72
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.7
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	92.68
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.67
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.61
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	92.6
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.56
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.51
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	92.41
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.4
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.37
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.35
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.33
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	92.31
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.24
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.21
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.2
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.19
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.19
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.15
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.02
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.0
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.97
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.87
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	91.86
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.84
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.82
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	91.76
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.73
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	91.72
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	91.67
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	91.61
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.52
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.51
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.41
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.38
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.29
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.23
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	91.17
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.08
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.07
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	91.03
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	91.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	90.91
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	90.85
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.7
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	90.54
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.54
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.53
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	90.51
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.46
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.34
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.13
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.02
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	89.95
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	89.86
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	89.75
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.75
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	89.56
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.29
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	88.87
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	88.01
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.8
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	87.77
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	87.46
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	86.78
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	86.66
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	86.4
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	86.2
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	85.93
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.39
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	85.34
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	83.36
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	82.58
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	82.57
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	82.16
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	81.95
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	81.91
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	81.91
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	81.37
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	81.34
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	81.22
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	81.07
d1xpua3	289	Transcription termination factor Rho, ATPase domai	80.99
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	80.81
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	80.54

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.1e-20  Score=174.10  Aligned_cols=126  Identities=17%  Similarity=0.154  Sum_probs=103.1

Q ss_pred             cCC-CCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhh
Q 009432          173 KQP-HRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTK  251 (535)
Q Consensus       173 ~~p-~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~k  251 (535)
                      .+| .++..+.+.||||||+|||||||||++|...+    + + .+++.|++..                          
T Consensus         3 ~p~~~~~~~~~p~liil~G~pGsGKST~a~~l~~~~----~-~-~~i~~D~~~~--------------------------   50 (172)
T d1yj5a2           3 LPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA----G-Y-VHVNRDTLGS--------------------------   50 (172)
T ss_dssp             BSTTSCSSCSSCCEEEEECCTTSSHHHHHHHHTGGG----T-C-EEEEHHHHCS--------------------------
T ss_pred             CCCccccCCCCCEEEEEECCCCCCHHHHHHHHHHhc----C-C-EEEchHHHHH--------------------------
Confidence            344 46777899999999999999999999997532    1 2 3445553211                          


Q ss_pred             hhhhccCchHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          252 MVMEYCYEPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       252 kv~ey~y~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                                     +..|.+.++.+|+.|.  .||||+||...++|..|+++|+++|+.+.+|++.+ +.++|++||..
T Consensus        51 ---------------~~~~~~~~~~~l~~g~--~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~-~~e~~~~Rn~~  112 (172)
T d1yj5a2          51 ---------------WQRCVSSCQAALRQGK--RVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCA-TIEQARHNNRF  112 (172)
T ss_dssp             ---------------HHHHHHHHHHHHHTTC--CEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECC-CHHHHHHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHCCC--CceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCC-CHHHHHHHHHH
Confidence                           2245566788899999  99999999999999999999999999999999987 89999998763


Q ss_pred             ---------CCCHHHHHHHhhccccC
Q 009432          332 ---------GFTLDDIERMAGQWEEA  348 (535)
Q Consensus       332 ---------~VpeEvIe~M~krfE~~  348 (535)
                               .++.++|++|.++|+++
T Consensus       113 R~~~~~~~~~v~~~~~~~~~~~fe~P  138 (172)
T d1yj5a2         113 REMTDPSHAPVSDMVMFSYRKQFEPP  138 (172)
T ss_dssp             HHHHCTTCCCCCHHHHHHHHHHCCCC
T ss_pred             hcccCcccCccHHHHHHHHHHhCCCC
Confidence                     58999999999999975

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.77  E-value=2.1e-18  Score=151.00  Aligned_cols=140  Identities=24%  Similarity=0.195  Sum_probs=104.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      +.||||+|+|||||||||++|.+..     ....+++.||++........                    .....+....
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~-----~~~~~~~~d~~~~~~~~~~~--------------------~~~~~~~~~~   56 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKN-----PGFYNINRDDYRQSIMAHEE--------------------RDEYKYTKKK   56 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS-----TTEEEECHHHHHHHHTTSCC--------------------GGGCCCCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC-----CCCEEechHHHHHHHhcccc--------------------hhhhhhhhhh
Confidence            4588999999999999999987642     23467788888765432100                    0012233334


Q ss_pred             HHHHHHHHHHHHHHHHHcCC-ceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc----CCCCHHH
Q 009432          263 EEAYRSSMLKAFTRTLDEGN-FTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV----HGFTLDD  337 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~-f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi----h~VpeEv  337 (535)
                      .......+...+..+++.+. -..||+|++|.....+..+.++++.+++.+++|++.+ +.++|++|+.    +.++.++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~~~  135 (152)
T d1ly1a_          57 EGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRGTKAVPIDV  135 (152)
T ss_dssp             HHHHHHHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCC-CHHHHHHHHTTCGGGCCCHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhccCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCC-CHHHHHHHHHccCCCCCCHHH
Confidence            44455556666677776653 1279999999999999999999999999999999987 7899998765    4899999


Q ss_pred             HHHHhhccccC
Q 009432          338 IERMAGQWEEA  348 (535)
Q Consensus       338 Ie~M~krfE~~  348 (535)
                      |++|+++|+..
T Consensus       136 i~~~~~~~~~~  146 (152)
T d1ly1a_         136 LRSMYKSMREY  146 (152)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=6.7e-16  Score=140.91  Aligned_cols=132  Identities=20%  Similarity=0.271  Sum_probs=86.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      .|+||+|+|+|||||||+|++|++++.+. +..+.+++.|+++............      ...         ...+...
T Consensus         1 ~p~li~l~GlpgsGKSTla~~L~~~l~~~-~~~~~~~~~D~~r~~~~~~~~~~~~------~~~---------~~~~~~~   64 (213)
T d1bifa1           1 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEF------FLP---------DNEEGLK   64 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGG------GCT---------TCHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCCCeEEcccceehhhccccccccc------ccc---------ccccchh
Confidence            37899999999999999999999988765 4567788999877654321110000      000         0000011


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV  330 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi  330 (535)
                      ........++..+...+......+||+|++|...++|..+.++++..++.+.++++.|.+ +.++++|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  132 (213)
T d1bifa1          65 IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD-PEVIAANI  132 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCC-HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccH-HHHHHHhH
Confidence            111222333333344443322239999999999999999999999999999999999854 45555553

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.52  E-value=4.6e-14  Score=133.50  Aligned_cols=134  Identities=15%  Similarity=0.067  Sum_probs=98.4

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE  259 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~  259 (535)
                      ..+.++|+|+|||||||||+|+.|.+++.+..+..+.++..|+++.....                         ...|+
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~-------------------------~l~ys   75 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK-------------------------DLGFS   75 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT-------------------------TCCSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcC-------------------------CCCCC
Confidence            46788999999999999999999998876654544444555544332211                         12344


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHH------hhcCceEEEEEEecCCHHHHHHhhcCCC
Q 009432          260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATA------KRSGYEVYILEATYKDPAGCAARNVHGF  333 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LA------r~~G~~V~vIe~~~~d~e~ci~RNih~V  333 (535)
                      .+........+...+......|.  .|||+.+......|..+.++.      +..+..++.|++.| +.++|.+|+..+.
T Consensus        76 ~~~r~~~~~r~~~~a~~~~~~g~--~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~-~le~~~~Rd~k~~  152 (208)
T d1m7ga_          76 EADRNENIRRIAEVAKLFADSNS--IAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDV-PVEVAEQRDPKGL  152 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEEC-CHHHHHTSCTTCH
T ss_pred             hhHHHHHHHHHHHHHHHHhccCC--ceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcC-CHHHHHHhhcccc
Confidence            44555556677777888889998  999999999999999888765      35667788888887 8999999988765


Q ss_pred             CHHHHHHH
Q 009432          334 TLDDIERM  341 (535)
Q Consensus       334 peEvIe~M  341 (535)
                      ..+.....
T Consensus       153 y~~~~~~~  160 (208)
T d1m7ga_         153 YKKAREGV  160 (208)
T ss_dssp             HHHHHHTS
T ss_pred             hhhhhcCc
Confidence            55544443

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.37  E-value=2.1e-12  Score=112.52  Aligned_cols=119  Identities=15%  Similarity=0.002  Sum_probs=78.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      +.+|+|+|+|||||||+|++|++.+    + ...+++.|+++........                     ..+ .....
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~----~-~~~~~~~d~~~~~~~~~~~---------------------~~~-~~~~~   54 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQL----D-NSAYIEGDIINHMVVGGYR---------------------PPW-ESDEL   54 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS----S-SEEEEEHHHHHTTCCTTCC---------------------CGG-GCHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc----C-CCEEEehHHHHHHHhcccc---------------------chh-HHHHH
Confidence            3589999999999999999999864    2 2345566655443221100                     000 11122


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHh-hcCceEEEEEEecCCHHHHHHhhcC
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAK-RSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr-~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ....+..+...+...++.+.  .+|+|.+......+..+..+.. ..++.+.++.+.+ +.++|.+|+..
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~--~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~  121 (176)
T d2bdta1          55 LALTWKNITDLTVNFLLAQN--DVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWT-NREELLRRDAL  121 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC--EEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEEC-CHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhcCC--CcccccccccHHHHHHHHHHHHhcCCCceEEEeccc-cHHHHHHHHHh
Confidence            33445566677788889998  9999998887666554443333 3466777788886 88999999876

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.37  E-value=1.9e-12  Score=113.58  Aligned_cols=159  Identities=16%  Similarity=0.104  Sum_probs=87.5

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      ..+|+|+|+|||||||+|+.|++.+    +.....++.|.+............         ....+.+.  ...+....
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l----~~~~~~~~~d~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~~   67 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDSLIEAMPLKMQSAE---------GGIEFDAD--GGVSIGPE   67 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS----SSCEEEEEHHHHHHHSCGGGGTST---------TSEEECTT--SCEEECHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc----CCCeEEeecchhhccccccccchh---------HHhhhhcc--cchhHHHH
Confidence            3489999999999999999999875    222233344444332211110000         00000000  01111122


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHH
Q 009432          263 EEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIER  340 (535)
Q Consensus       263 ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~  340 (535)
                      ....+..+...+...++.+.  .+|+|.++.........+..+. .+..+++|.+.| ++++|.+|...  ....+..+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~v~l~~-~~e~~~~R~~~R~~~~~~~~~~  143 (178)
T d1qhxa_          68 FRALEGAWAEGVVAMARAGA--RIIIDDVFLGGAAAQERWRSFV-GDLDVLWVGVRC-DGAVAEGRETARGDRVAGMAAK  143 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC--EEEEEECCTTTHHHHHHHHHHH-TTCCEEEEEEEC-CHHHHHHHHHHTSSSCTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcc--ceEEeeeecchHHHHHHHHHhh-cCCceeecccCC-CHHHHHHHHHhcCCcchhhhhh
Confidence            23344444455566667777  8888888777655544443333 367777888887 78999888764  444556666


Q ss_pred             HhhccccCCccceeecCCCC
Q 009432          341 MAGQWEEAPTLYLQLDIKTL  360 (535)
Q Consensus       341 M~krfE~~p~~y~~lD~~sl  360 (535)
                      +...++.....-+.+|++.+
T Consensus       144 ~~~~~~~~~~~dl~IDts~~  163 (178)
T d1qhxa_         144 QAYVVHEGVEYDVEVDTTHK  163 (178)
T ss_dssp             HTTGGGTTCCCSEEEETTSS
T ss_pred             hhhhhhcCCCCCEEEECCCC
Confidence            66665554333344444433

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.3e-11  Score=108.67  Aligned_cols=136  Identities=13%  Similarity=0.029  Sum_probs=92.0

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE  259 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~  259 (535)
                      ...+.||||+|+|||||||+|+.|++.+    +  ...++.|+++........                    .....+.
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l----~--~~~~~~d~~~~~~~~~~~--------------------~~~~~~~   56 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQL----H--AAFLDGDFLHPRRNIEKM--------------------ASGEPLN   56 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHH----T--CEEEEGGGGCCHHHHHHH--------------------HTTCCCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh----C--CCeechhhhhHHHHhhhh--------------------ccCccee
Confidence            3567789999999999999999999886    2  245677777655322100                    0001122


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC----CCCH
Q 009432          260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH----GFTL  335 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih----~Vpe  335 (535)
                      ..........+...+...+..+.  .++++..+.....+    +++++.+..+.+|++.+ ++++|++|...    ....
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~v~l~~-~~e~~~~Rl~~R~~~~~~~  129 (171)
T d1knqa_          57 DDDRKPWLQALNDAAFAMQRTNK--VSLIVCSALKKHYR----DLLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKT  129 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCS--EEEEECCCCSHHHH----HHHHTTCTTEEEEEEEC-CHHHHHHHHHTSTTCCCCH
T ss_pred             hhhhHHHHHHHHHHHHHHHhccC--ceEeeccchHHHHH----HHHHHhCCCceEEeecC-CHHHHHHHHHhCcCCCccH
Confidence            22333334444455666667776  88888877765544    56778888889999987 88888887654    5678


Q ss_pred             HHHHHHhhccccC
Q 009432          336 DDIERMAGQWEEA  348 (535)
Q Consensus       336 EvIe~M~krfE~~  348 (535)
                      +.++.+.+.||.+
T Consensus       130 ~~~~~~~~~~e~~  142 (171)
T d1knqa_         130 QMLVTQFETLQEP  142 (171)
T ss_dssp             HHHHHHHHHCCCC
T ss_pred             HHHHhhHHHhhCC
Confidence            8999888888763

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.26  E-value=2.5e-11  Score=106.86  Aligned_cols=135  Identities=18%  Similarity=0.099  Sum_probs=83.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...||+|+|+|||||||+|+.|++.+    |.....++.|+++........ ..         .          .....+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l----g~~~~~~~~d~~~~~~~~~~~-~~---------~----------~~~~~~   58 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRI-DP---------W----------LPQSHQ   58 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCC-CT---------T----------SSSHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh----CCCEEEecHHHHHHHHhcCCc-cc---------c----------cchhhh
Confidence            34689999999999999999998653    333333455655433221100 00         0          001112


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC-----CCCHH
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH-----GFTLD  336 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih-----~VpeE  336 (535)
                      .....+..+...+...++.+.  .||+|++... ..+    ......+..+.++.+.+ ++++|++|...     ....+
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~--~vi~~~~~~~-~~~----~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~~~  130 (176)
T d1zp6a1          59 QNRMIMQIAADVAGRYAKEGY--FVILDGVVRP-DWL----PAFTALARPLHYIVLRT-TAAEAIERCLDRGGDSLSDPL  130 (176)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSC--EEEECSCCCT-TTT----HHHHTTCSCEEEEEEEC-CHHHHHHHHHTTCTTSCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCC--CeEecccccH-HHH----HHHHhcccccccccCCC-CHHHHHHHHHhCCCccccchh
Confidence            233344455556666778887  9999987643 222    23445567777888887 78888887654     34578


Q ss_pred             HHHHHhhccccC
Q 009432          337 DIERMAGQWEEA  348 (535)
Q Consensus       337 vIe~M~krfE~~  348 (535)
                      .+..++..+...
T Consensus       131 ~~~~~~~~~~~~  142 (176)
T d1zp6a1         131 VVADLHSQFADL  142 (176)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             hHHHHHHHHhhc
Confidence            888888887654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.3e-11  Score=106.12  Aligned_cols=121  Identities=17%  Similarity=0.146  Sum_probs=73.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      +.++|+|+|+|||||||+|+.|++++...+. ....+..|+++.....                         .+.+...
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~-~~~~~~~d~~~~~~~~-------------------------~~~~~~~   71 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGI-PCYTLDGDNIRQGLNK-------------------------NLGFSPE   71 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTC-CEEEECHHHHTTTTTT-------------------------TCCSSHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC-CccchhHHhhhccccc-------------------------ccchhhh
Confidence            5789999999999999999999998865432 2222222222221110                         0112212


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      ........+...+...+..+.  .++++.++.....+..+..+.+.....+..+.+.+ ...+|.+++..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~  138 (195)
T d1x6va3          72 DREENVRRIAEVAKLFADAGL--VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDA-PLHVCEQRDVK  138 (195)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC--EEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEECC------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCC--ccccccccchHHHHHHHHHHHhccccccccccchh-heeeehhhccc
Confidence            222333445555667778888  99999999999999999888888877777777665 55666666544

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.09  E-value=2.1e-10  Score=104.23  Aligned_cols=127  Identities=14%  Similarity=0.067  Sum_probs=78.7

Q ss_pred             CCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccC
Q 009432          179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCY  258 (535)
Q Consensus       179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y  258 (535)
                      .++++.+|+|.|+|||||||+|+.|++++    |  ...++.+|+++........      +    + ..+........+
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~~~----g--~~~i~~g~~~r~~~~~~~~------~----~-~~~~~~~~~~~~   64 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVRDF----G--WVHLSAGDLLRQEQQSGSK------D----G-EMIATMIKNGEI   64 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHTTCT------T----H-HHHHHHHHTTCC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHH----C--CceEchhhHHHHHhhhhhh------h----h-hhhhhHhhhccc
Confidence            35788999999999999999999999875    2  3566888887754321000      0    0 001000111111


Q ss_pred             chHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          259 EPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       259 ~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                      .+...  ....    +...+......-+|+|+...+..++..|.++........++|.+.+ +.++|++|.
T Consensus        65 ~~~~~--~~~~----~~~~~~~~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~-~~~~~~~R~  128 (194)
T d1qf9a_          65 VPSIV--TVKL----LKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDC-PEEVMTQRL  128 (194)
T ss_dssp             CCHHH--HHHH----HHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHH
T ss_pred             cchHH--HHHH----HHHHhhhhhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeec-chHHHHHHH
Confidence            11111  1111    1111222212268999999999998888888877777778888987 788888774

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.01  E-value=1.1e-09  Score=95.38  Aligned_cols=31  Identities=35%  Similarity=0.480  Sum_probs=27.0

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      .+.++|+|+|+|||||||+|++|+++|...+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~   34 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQG   34 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            3568999999999999999999999986543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.93  E-value=3.6e-09  Score=99.05  Aligned_cols=127  Identities=15%  Similarity=0.127  Sum_probs=83.5

Q ss_pred             CCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccC
Q 009432          179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCY  258 (535)
Q Consensus       179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y  258 (535)
                      ....|..|+|+|+|||||||||+.|+..+   ++ ...+++.|+|+.......                .+.... ....
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~---~~-~~~~i~~d~~~~~~~~~~----------------~~~~~~-~~~~   86 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEET---QG-NVIVIDNDTFKQQHPNFD----------------ELVKLY-EKDV   86 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHT---TT-CCEEECTHHHHTTSTTHH----------------HHHHHH-GGGC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHh---hc-ceEEEecHHHHHHhccCc----------------ccchhh-hHHH
Confidence            34567889999999999999999999764   23 456778887764322100                000000 0001


Q ss_pred             chHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhh
Q 009432          259 EPEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARN  329 (535)
Q Consensus       259 ~~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RN  329 (535)
                      ...........+.......+..+.  .+++|.++........++..+...|+.+++..+.+ ....|+.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~  154 (273)
T d1gvnb_          87 VKHVTPYSNRMTEAIISRLSDQGY--NLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAV-PKINSYLGT  154 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC--CEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECC-CHHHHHHHH
T ss_pred             HHHHHhhccchHHHHHHHHHhhCC--CCcccccccchHHHHHHHHHHHHcCCeEEEEecCC-CchhhhhHH
Confidence            111112222233444556667777  88999999999999999999999999998888775 667776654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=8.7e-08  Score=86.34  Aligned_cols=144  Identities=16%  Similarity=0.181  Sum_probs=75.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEM  262 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~  262 (535)
                      |++|+|.|.|||||||+|+.|++++    |  ...++.+|++|..... ...        . ..+.+...+..-..-++ 
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~----g--~~~i~~g~llR~~~~~-~~~--------~-~~~~~~~~~~~~~~v~d-   63 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY----G--YTHLSAGELLRDERKN-PDS--------Q-YGELIEKYIKEGKIVPV-   63 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHC-TTS--------T-THHHHHHHHHTTCCCCH-
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh----C--CceEcHHHHHHHHHHh-hhh--------h-HHHHHHHHHhcCCcccc-
Confidence            5789999999999999999999876    2  2456888888765321 000        0 00111111111111111 


Q ss_pred             HHHHHHHHHHHHHHHHH---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHH----hhcC----
Q 009432          263 EEAYRSSMLKAFTRTLD---EGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAA----RNVH----  331 (535)
Q Consensus       263 ee~~~q~llk~akkaLk---~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~----RNih----  331 (535)
                       ......+...+.....   ...  .+|+|+.-.+..+...|..+.......-.++.+.+ +.+++++    |...    
T Consensus        64 -~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~-~~~~~~~r~~~R~~~~~r~  139 (194)
T d1teva_          64 -EITISLLKREMDQTMAANAQKN--KFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC-NNEICIERCLERGKSSGRS  139 (194)
T ss_dssp             -HHHHHHHHHHHHHHHHHCTTCC--EEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEEC-CHHHHHHHHHHHHHTSSCC
T ss_pred             -chhhHHHHHhhcccchhhhccc--ceeeccchhhHHHHHHHhhhhhccccccEEEeecC-cchhheeecccCCCcccCC
Confidence             1111122222222222   233  77899877777766666555444443334555665 5555444    3222    


Q ss_pred             CCCHHHHHHHhhcccc
Q 009432          332 GFTLDDIERMAGQWEE  347 (535)
Q Consensus       332 ~VpeEvIe~M~krfE~  347 (535)
                      ....+.|.+..+.|..
T Consensus       140 ~~~~e~i~~r~~~y~~  155 (194)
T d1teva_         140 DDNRESLEKRIQTYLQ  155 (194)
T ss_dssp             SCCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHH
Confidence            3456777766665554

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.68  E-value=9.3e-09  Score=93.07  Aligned_cols=138  Identities=12%  Similarity=0.077  Sum_probs=72.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      +|+.|+|.|+|||||||+|+.|++++    |  ...++.+++++.......+           ..+.+............
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~----~--~~~is~~~~~~~~~~~~~~-----------~~~~~~~~~~~g~~~~~   64 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKY----Q--LAHISAGDLLRAEIAAGSE-----------NGKRAKEFMEKGQLVPD   64 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH----C--CEECCHHHHHHHHHHHTCH-----------HHHHHHHHHHTTCCCCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH----C--CcEEehhHHHHHhhhcccH-----------HHHHHHHHHhcCCcccc
Confidence            56779999999999999999999886    2  2455777777654321000           00001000000011111


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCc-eEEEEEEecCCHHHHHHhhcCCCCHHHHHH
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGY-EVYILEATYKDPAGCAARNVHGFTLDDIER  340 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~-~V~vIe~~~~d~e~ci~RNih~VpeEvIe~  340 (535)
                      . . ....+............  .+|+|+......+...|.    ..+. ...+|.+.+ +.+++.+|-....+.+.+++
T Consensus        65 ~-~-~~~~~~~~~~~~~~~~~--~~vid~~~~~~~q~~~l~----~~~~~p~~~i~L~~-~~e~l~~R~~~~~~~e~~~~  135 (189)
T d1zaka1          65 E-I-VVNMVKERLRQPDAQEN--GWLLDGYPRSYSQAMALE----TLEIRPDTFILLDV-PDELLVERVVFDDTEEKVKL  135 (189)
T ss_dssp             H-H-HHHHHHHHHHSHHHHHT--CEEEESCCCSHHHHHHHH----TTTCCCSEEEEEEC-CHHHHHHHHTTTCCTTHHHH
T ss_pred             e-e-ehhhhhhHhhhcccccC--cEEeeccchhhHHHhhhh----hcccccchheeech-hhhhhhhhccccchHHHHHH
Confidence            1 0 11111111222222223  568898777766655443    2333 235677776 78888888665555555554


Q ss_pred             Hhhcc
Q 009432          341 MAGQW  345 (535)
Q Consensus       341 M~krf  345 (535)
                      -+..|
T Consensus       136 rl~~y  140 (189)
T d1zaka1         136 RLETY  140 (189)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=2.2e-08  Score=89.74  Aligned_cols=139  Identities=19%  Similarity=0.182  Sum_probs=79.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      -|+|.|+|||||||+|+.|++.+    |  ...++.+++++........      +|     ..+...+.....-+  .+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~----g--~~~i~~~~l~~~~~~~~~~------~~-----~~i~~~~~~~~~~~--~~   62 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL----G--IPQISTGELFRRNIEEGTK------LG-----VEAKRYLDAGDLVP--SD   62 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----T--CCEEEHHHHHHHHHHTTCH------HH-----HHHHHHHHHTCCCC--HH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----C--CceEchHHHHHHHHhhhhh------hH-----HHHHHHHHhhhhhh--hH
Confidence            37788999999999999999876    2  2455888887764321000      00     00000000000000  11


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhc----CCCCHHHHH
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNV----HGFTLDDIE  339 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNi----h~VpeEvIe  339 (535)
                       ....++...........  .+|+|+.-....+...|.+.....+..+ +++.+.+ +.++|.+|-.    .....+++.
T Consensus        63 -~~~~~l~~~~~~~~~~~--~~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~-~~e~l~~R~~~r~r~~~~~~~i~  138 (181)
T d2cdna1          63 -LTNELVDDRLNNPDAAN--GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRV-SEEVLLERLKGRGRADDTDDVIL  138 (181)
T ss_dssp             -HHHHHHHHHTTSGGGTT--CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHHHCCTTCSHHHHH
T ss_pred             -HHHHHHHHHhhCccccc--cEEecccccchhHHHHHHHHHHhcCCCccEEEeccC-CHHHHHhhhcccccccchhHHHH
Confidence             11112211111123344  7899998888888888888888777765 5667776 6777776543    355667776


Q ss_pred             HHhhccc
Q 009432          340 RMAGQWE  346 (535)
Q Consensus       340 ~M~krfE  346 (535)
                      +..+.|+
T Consensus       139 ~rl~~y~  145 (181)
T d2cdna1         139 NRMKVYR  145 (181)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555554

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=1.4e-07  Score=85.40  Aligned_cols=144  Identities=15%  Similarity=0.115  Sum_probs=76.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCch
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEP  260 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~  260 (535)
                      ++.-+|+|.|+|||||||+|+.|++++    |  ...++.+|++|.......    +     . ..+.+..........+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~----g--~~~is~gdl~R~~~~~~~----~-----~-~~~~i~~~~~~~~~~~   69 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY----S--FVHLSAGDLLRAEQGRAG----S-----Q-YGELIKNCIKEGQIVP   69 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS----S--CEEEEHHHHHHHHHHSTT----C-----S-CHHHHHHHHHTTCCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh----C--CeEEehhHHHHHHhhhcc----c-----H-HHHHHHHhhhcccccc
Confidence            455678888999999999999999874    2  356688888876432100    0     0 0011111000000111


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--------C
Q 009432          261 EMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--------G  332 (535)
Q Consensus       261 e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--------~  332 (535)
                        .......+...+......+. ..+|+|+.-....+...+....   ...-.++.+.+ +.+++++|...        .
T Consensus        70 --~~~~~~~~~~~~~~~~~~~~-~~~vl~g~p~~~~q~~~~~~~~---~~~~~~i~l~~-~~e~~~~R~~~~~~~~~r~~  142 (196)
T d1ukza_          70 --QEITLALLRNAISDNVKANK-HKFLIDGFPRKMDQAISFERDI---VESKFILFFDC-PEDIMLERLLERGKTSGRSD  142 (196)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTC-CEEEEETCCCSHHHHHHHHHHT---CCCSEEEEEEC-CHHHHHHHHHHHHHHHCCTT
T ss_pred             --chhHHHHHHHHHHhhhccCC-CceeeeccchhHHHHHHHHHhc---cccceeeccCC-CHHHHHHHHHhccccccccc
Confidence              11122222233333333332 2788888776666655554443   23335566665 67777776321        4


Q ss_pred             CCHHHHHHHhhcccc
Q 009432          333 FTLDDIERMAGQWEE  347 (535)
Q Consensus       333 VpeEvIe~M~krfE~  347 (535)
                      ...+.+++....|..
T Consensus       143 ~~~e~~~~r~~~y~~  157 (196)
T d1ukza_         143 DNIESIKKRFNTFKE  157 (196)
T ss_dssp             CSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            556666665555543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=3.3e-08  Score=88.94  Aligned_cols=124  Identities=18%  Similarity=0.161  Sum_probs=71.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      -|||.|+|||||||+|+.|++++    |  ...++.+|+++......  .    .+|     ..+...+......+.  .
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~----g--~~~i~~~d~~~~~~~~~--~----~~g-----~~i~~~~~~~~~~~~--~   64 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF----H--AAHLATGDMLRSQIAKG--T----QLG-----LEAKKIMDQGGLVSD--D   64 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHHHHTT--C----HHH-----HHHHHHHHTTCCCCH--H
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CceEeccccceeccccC--C----hHH-----HHHHHHHhhhccccc--c
Confidence            36677999999999999999875    2  35668888876543210  0    000     111110111111111  1


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhc
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNV  330 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNi  330 (535)
                      .....+...+......+.  -+|+|+.-....+...+.+++...+.+. .+|.+.+ +.++|.+|-.
T Consensus        65 ~~~~~~~~~l~~~~~~~~--g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~-~~~~~~~R~~  128 (180)
T d1akya1          65 IMVNMIKDELTNNPACKN--GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV-DDELLVARIT  128 (180)
T ss_dssp             HHHHHHHHHHHHCGGGGS--CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC-CHHHHHHHHH
T ss_pred             hhHHHHHHHHhcCccccC--CEeccCccchhhhHHHHHhhHHHcCCCceeeeeccc-ccchhhhccc
Confidence            111112122222111233  5799998888888888888888877754 5677776 7888888853

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.60  E-value=2.5e-08  Score=89.66  Aligned_cols=139  Identities=17%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      -|+|.|+|||||||+|+.|++.+    | . ..++.+|+++......  .        ..+ +.+...+....+.++.. 
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~----g-~-~~is~gdllr~~~~~~--~--------~~g-~~i~~~~~~g~~~~d~~-   63 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY----G-T-PHISTGDMFRAAIQEG--T--------ELG-VKAKSFMDQGALVPDEV-   63 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH----C-C-CEEEHHHHHHHHHHHT--C--------HHH-HHHHHHHHHTCCCCHHH-
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----C-C-ceeeHHHHHHHhhhcC--C--------chH-HHHHHHHHcCCcccCcc-
Confidence            47889999999999999999886    2 2 3558888887643210  0        000 11111011111111111 


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcCCCCHHHHHHHhh
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVHGFTLDDIERMAG  343 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih~VpeEvIe~M~k  343 (535)
                       ....+...+. ......  .+|+|+.-....+...|.+.....+..+ .++.+.+ +.+.+.+|....-.++.+++-++
T Consensus        64 -~~~~~~~~~~-~~~~~~--~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~-~~e~~~~R~~~~~~~e~i~~R~~  138 (182)
T d1s3ga1          64 -TIGIVRERLS-KSDCDN--GFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQV-EKEELIARLTADDNPDTVTNRLE  138 (182)
T ss_dssp             -HHHHHHHHHT-SSTTSS--CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             -hhHHHHHhhc-cccccc--ceeeeccccchhHHHHHHHHhhcCCCeeeeccchhh-hhhhhhhhhhccchhHHHHHHHH
Confidence             1111111111 112233  5789988788888888888777777654 3444554 67888888766667777776555


Q ss_pred             ccc
Q 009432          344 QWE  346 (535)
Q Consensus       344 rfE  346 (535)
                      .|.
T Consensus       139 ~y~  141 (182)
T d1s3ga1         139 VNM  141 (182)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.60  E-value=5.5e-08  Score=84.95  Aligned_cols=114  Identities=14%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCc
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYE  259 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~  259 (535)
                      .|+.+.|+|+|+|||||||+|+.|++++.     ...+++.+++..........                ..+...+.+.
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~-----~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~   60 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELD-----GFQHLEVGKLVKENHFYTEY----------------DTELDTHIIE   60 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHST-----TEEEEEHHHHHHHTTCSCC----------------------CCCCC
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhC-----CCcEEeHHHHHHHHhhhhhH----------------HHhhcccchH
Confidence            46778999999999999999999998741     23555656555433211000                0001112222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC
Q 009432          260 PEMEEAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH  331 (535)
Q Consensus       260 ~e~ee~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih  331 (535)
                      .    .....+.+.+...+..+.  .+++|......        +.+.  ....+|+++| +++++++|...
T Consensus        61 ~----~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~--------~~~~--~~~~vI~L~~-~~e~l~~Rl~~  115 (174)
T d1y63a_          61 E----KDEDRLLDFMEPIMVSRG--NHVVDYHSSEL--------FPER--WFHMVVVLHT-STEVLFERLTK  115 (174)
T ss_dssp             H----HHHHHHHHHHHHHHTSSS--EEEEECSCCTT--------SCGG--GCSEEEEEEC-CHHHHHHHHHH
T ss_pred             H----HHHHHHHHHHHhhhhhcc--cccccHHHHHH--------HHHh--cCceEEEEEC-CHHHHHHHHHh
Confidence            1    123345555667777777  78888755431        1112  2224566776 78888888654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=3.3e-08  Score=88.46  Aligned_cols=135  Identities=18%  Similarity=0.154  Sum_probs=73.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      -|+|.|+|||||||+|+.|++++    + . ..++.+|+++.......          ..+ +.+...+......+  ..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~----~-~-~~i~~~~llr~~~~~~~----------~~~-~~i~~~~~~g~~~~--d~   62 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY----G-I-PQISTGDMLRAAVKSGS----------ELG-KQAKDIMDAGKLVT--DE   62 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH----C-C-CEEEHHHHHHHHHHHTC----------TTT-GGGHHHHHHTCCCC--HH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C-C-ceechhhHhHHhhccCC----------hHH-HHHHHHHHcCCCCc--ch
Confidence            47789999999999999999875    2 2 35588888876543100          001 11111111111111  11


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcCCCCHHHHHHHhh
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVHGFTLDDIERMAG  343 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih~VpeEvIe~M~k  343 (535)
                      .....+...+. ......  -+|+|+...+..+...|.    +.+..+ .+|.+.| +.++|.+|....-..+.+++-..
T Consensus        63 ~v~~~~~~~~~-~~~~~~--g~i~~g~pr~~~~~~~~~----~~~~~~~~vi~L~~-~~~~l~~R~~~~~~~e~i~~r~~  134 (179)
T d1e4va1          63 LVIALVKERIA-QEDCRN--GFLLDGFPRTIPQADAMK----EAGINVDYVLEFDV-PDELIVDRIVKDDQEETVRKRLV  134 (179)
T ss_dssp             HHHHHHHHHHT-SGGGGG--CEEEESCCCSHHHHHHHH----HTTCCCSEEEEEEC-CHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             hHHHHHHHhhc-cccccc--ceeecccccchHHhhhhh----hccCCceEEEEecc-chhhhhhhhcccccHHHHHHHHH
Confidence            12222211111 111122  578888776655444333    334332 5677776 78889899877777777766655


Q ss_pred             ccc
Q 009432          344 QWE  346 (535)
Q Consensus       344 rfE  346 (535)
                      .|+
T Consensus       135 ~y~  137 (179)
T d1e4va1         135 EYH  137 (179)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.54  E-value=9.7e-08  Score=86.09  Aligned_cols=140  Identities=14%  Similarity=0.016  Sum_probs=75.6

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEME  263 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~e  263 (535)
                      +=|||.|+|||||||+|+.|++++    |  ...++.+|+++.....-  .        ..+ ..+..........+  .
T Consensus         4 ~riil~G~pGSGKsT~a~~La~~~----g--~~~i~~gdllr~~~~~~--~--------~~g-~~~~~~~~~g~~~~--~   64 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAKNF----C--VCHLATGDMLRAMVASG--S--------ELG-KKLKATMDAGKLVS--D   64 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHHHHHHT--C--------HHH-HHHHHHHHTTCCCC--H
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh----C--CeEEeHHHHHHHHHhcc--C--------ccc-chhhhhhccCCccc--c
Confidence            345567999999999999999875    2  35668888887543210  0        000 11111111111111  1


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcC-----CCCHHH
Q 009432          264 EAYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVH-----GFTLDD  337 (535)
Q Consensus       264 e~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih-----~VpeEv  337 (535)
                      +.+...+...+.. .....  -+|+|+--....+...|.+.....+..+ .++.+.+ +...+++|...     ....+.
T Consensus        65 ~~v~~~~~~~l~~-~~~~~--g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v-~~~~~~~r~~~r~~~~d~~~e~  140 (190)
T d1ak2a1          65 EMVLELIEKNLET-PPCKN--GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSI-PDSLLIRRITGRLIHSDDNKKA  140 (190)
T ss_dssp             HHHHHHHHHHHTS-GGGTT--CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEEC-CHHHHHHHHHTCEECCCCCHHH
T ss_pred             ceeeeeehhhhcc-ccccC--ceeecccccchhHHHHHHHHhhhccccccccccccc-hHHHHHhhhccCCCCCchhhHH
Confidence            1122222222211 12233  5788887777777777777666655443 5566666 55666555432     566777


Q ss_pred             HHHHhhccc
Q 009432          338 IERMAGQWE  346 (535)
Q Consensus       338 Ie~M~krfE  346 (535)
                      |.+....|.
T Consensus       141 i~~R~~~y~  149 (190)
T d1ak2a1         141 LKIRLEAYH  149 (190)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766555554

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.53  E-value=3.3e-08  Score=86.37  Aligned_cols=43  Identities=16%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .+|+|.|+|||||||++++|++++.+.+. .+.+++.+++++..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~-~~~~~~~~~~~~~~   44 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV-NYKMVSFGSVMFEV   44 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTC-CCEEEEHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEEecCChhHHH
Confidence            38999999999999999999999876643 45566777766543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.47  E-value=1.3e-07  Score=83.74  Aligned_cols=139  Identities=15%  Similarity=0.110  Sum_probs=77.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEE  264 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee  264 (535)
                      -|+|.|.|||||||+|+.|++++    | . ..++.+|+++......  .        ..+ ..+...+......++.  
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~----~-~-~~i~~~~ll~~~~~~~--~--------~~~-~~i~~~~~~~~~~~~~--   62 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY----G-I-PHISTGDMFRAAMKEG--T--------PLG-LQAKQYMDRGDLVPDE--   62 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH----C-C-CEEEHHHHHHHHHHHT--C--------HHH-HHHHHHHHHTCCCCHH--
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----C-C-ceechhHHHHHhhccC--C--------hhh-HHHHHHHHcCCeeccc--
Confidence            38899999999999999999876    2 2 3558888877543210  0        000 0010000011111111  


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceE-EEEEEecCCHHHHHHhhcCCCCHHHHHHHhh
Q 009432          265 AYRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEV-YILEATYKDPAGCAARNVHGFTLDDIERMAG  343 (535)
Q Consensus       265 ~~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V-~vIe~~~~d~e~ci~RNih~VpeEvIe~M~k  343 (535)
                      .....+...... .....  -+|+|+.-........+...+...+..+ .++.+.+ +.+.+.+|-.....++.+++.++
T Consensus        63 ~~~~~~~~~~~~-~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~e~~~~R~~~~~~~e~~~~Rl~  138 (182)
T d1zina1          63 VTIGIVRERLSK-DDCQN--GFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDV-RQDVLMERLTADDNEATVANRLE  138 (182)
T ss_dssp             HHHHHHHHHHTS-GGGTT--CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEEC-CHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             hHHHHHHHHhhc-hhhhc--CcccccccchhHHHHHHHHhhhccCCceeeeecccc-ccchhhhccccccchHHHHHHHH
Confidence            111111111111 11122  4677877777777777777777776665 5555665 67888888766667777776666


Q ss_pred             ccc
Q 009432          344 QWE  346 (535)
Q Consensus       344 rfE  346 (535)
                      .|.
T Consensus       139 ~y~  141 (182)
T d1zina1         139 VNM  141 (182)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.38  E-value=2.3e-07  Score=82.49  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=26.9

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      |+|+|+|||||||+|+.|++++    |  ...++.|+++.
T Consensus         5 Iil~G~~GsGKSTia~~LA~~L----g--~~~id~D~~ie   38 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARAL----G--YEFVDTDIFMQ   38 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHH----T--CEEEEHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh----C--CCEEehhhhhh
Confidence            5677999999999999999886    2  24667777654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.37  E-value=2.1e-07  Score=84.38  Aligned_cols=41  Identities=29%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~  228 (535)
                      ++.+|+|.|+|||||||+|+.|++++    |  ...++.+|+++...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~----g--~~~is~g~llr~~~   47 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY----G--YTHLSTGDLLRAEV   47 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT----C--CEEEEHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh----C--CeeEeccHHHHHHH
Confidence            45689999999999999999999863    2  35668888887653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.32  E-value=1.4e-07  Score=82.77  Aligned_cols=41  Identities=24%  Similarity=0.463  Sum_probs=30.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      .+||++|+|||||||+|+.|++++.+.+ ....+++.+|..+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~-~~~~~~~~~d~~~   42 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQG-INNKIINYGDFML   42 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTT-CCEEEEEHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcC-CCEEEEECCCcch
Confidence            4899999999999999999999986553 3344555555443

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=8.5e-06  Score=74.36  Aligned_cols=28  Identities=25%  Similarity=0.415  Sum_probs=24.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      .+|++-|+.||||||+++.|.+++...|
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g   30 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLG   30 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            4788999999999999999999987664

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.1e-06  Score=80.45  Aligned_cols=45  Identities=27%  Similarity=0.314  Sum_probs=35.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcC----CCCcEEEeCCceeee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENG----GDAPRIHSMDDYFMT  226 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g----G~~~rIlS~DDyfr~  226 (535)
                      .|+||.++|.+||||||||+.|.+.+...+    +..+.+++.|||++.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~   49 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV   49 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccccc
Confidence            478999999999999999999998764321    124578899999754

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=5.8e-07  Score=76.10  Aligned_cols=35  Identities=29%  Similarity=0.294  Sum_probs=26.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      .|+|+|+|||||||+|+.|++++    +  ..++..|+.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L----~--~~~id~~~~~~   38 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL----N--MEFYDSDQEIE   38 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT----T--CEEEEHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh----C--CCeEeechhHH
Confidence            58888999999999999999875    2  23445555443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.22  E-value=1.6e-06  Score=79.17  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=31.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehh
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEV  228 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~  228 (535)
                      .+-|||.|+|||||||+|+.|++++    |  ...++.+|+++...
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~----g--~~~is~gdllr~~~   45 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHF----E--LKHLSSGDLLRDNM   45 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHB----C--CEEEEHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHH----C--CeEEcHHHHHHHHH
Confidence            3457788999999999999999864    2  35669999988654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.16  E-value=8e-07  Score=78.77  Aligned_cols=34  Identities=29%  Similarity=0.289  Sum_probs=27.1

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      |+|+|+|||||||+|+.|++.+    |  ...++.|+++.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l----~--~~~~d~d~~ie   36 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL----D--LVFLDSDFLIE   36 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH----T--CEEEEHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh----C--CCEEecCchhh
Confidence            6777999999999999999986    2  24667777653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=1.2e-06  Score=77.35  Aligned_cols=34  Identities=38%  Similarity=0.510  Sum_probs=25.5

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      |||+|+|||||||+|+.|++++    + . .++..|+++.
T Consensus         4 IvliG~~G~GKSTig~~La~~l----~-~-~fiD~D~~ie   37 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL----G-V-GLLDTDVAIE   37 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH----T-C-CEEEHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh----C-C-CeEeeccchh
Confidence            4556999999999999999987    2 2 2456676543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.06  E-value=5.9e-06  Score=74.08  Aligned_cols=38  Identities=32%  Similarity=0.406  Sum_probs=30.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeee
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMT  226 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~  226 (535)
                      .|++|.++|.+||||||+|+.|.++     |  ..+++.|++.+.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~-----g--~~~~~~D~~~~~   39 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSW-----G--YPVLDLDALAAR   39 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-----T--CCEEEHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHC-----C--CeEEEccHHHHH
Confidence            4789999999999999999998643     3  346788887654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.1e-06  Score=80.23  Aligned_cols=66  Identities=11%  Similarity=-0.051  Sum_probs=38.3

Q ss_pred             HHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcC--CCCHHHHHHHhhcc
Q 009432          271 LKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVH--GFTLDDIERMAGQW  345 (535)
Q Consensus       271 lk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih--~VpeEvIe~M~krf  345 (535)
                      .+.+...+..|.  .+|++..   .    ......+......++|.+...+.+++.+|-..  ..+.+.|++...++
T Consensus        81 ~~~v~~~~~~g~--~~~~~~~---~----~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~~~~e~i~~rl~~~  148 (190)
T d1lvga_          81 KEAVRAVQAMNR--ICVLDVD---L----QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAA  148 (190)
T ss_dssp             HHHHHHHHHTTC--EEEEECC---H----HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             cchhhhhhcCCC--ceeecch---H----hhhhhhhhccccceEEEEecchHHHHHHHHhhccccchHHHHHHHHHH
Confidence            344567788998  8888762   1    22223344455555565554466666665433  46777777665443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.97  E-value=2.3e-06  Score=75.46  Aligned_cols=47  Identities=26%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ...++||.++|.+||||||||+.|.+.+... +....+++.|+++...
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~-~~~~~~~~~~~~~~~~   65 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVFHMDDHIVER   65 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGGGCCCH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhccc-cccceeccccccccCH
Confidence            3467899999999999999999999887654 4455666777776543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.95  E-value=1.4e-06  Score=75.35  Aligned_cols=37  Identities=32%  Similarity=0.502  Sum_probs=29.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      .|+|+|+|||||||+|+.|++++    |  ..+++.|++.+..
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l----~--~~~i~~~~~~~~~   42 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS----G--LKYINVGDLAREE   42 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH----C--CEEEEHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----C--CcEEechHHHHHh
Confidence            47799999999999999999876    2  2456777776543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.92  E-value=1.6e-05  Score=70.97  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=21.0

Q ss_pred             EEEEEEccCCChHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .+|||+|++||||||++++|.+.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            48999999999999999999875

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.7e-05  Score=72.04  Aligned_cols=29  Identities=28%  Similarity=0.369  Sum_probs=25.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      ..+|++.|+.||||||+|+.|.+.+.+.|
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~~~g   31 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALCAAG   31 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            35899999999999999999999987664

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=8.3e-07  Score=80.49  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |||+|++|||||||+++|++.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.89  E-value=1.7e-05  Score=74.72  Aligned_cols=47  Identities=21%  Similarity=0.388  Sum_probs=39.3

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ..++.+|+|+|++|+||||.+.+|+.++... +..+.+++.|-|+...
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~-~~kV~lit~Dt~R~gA   54 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFRAAA   54 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTCHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCceEEEeecccccch
Confidence            3567899999999999999999999888766 4577888999887644

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=1.8e-05  Score=74.51  Aligned_cols=49  Identities=18%  Similarity=0.268  Sum_probs=40.4

Q ss_pred             CCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          178 ATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       178 ~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +....+.+|+|+|++|+||||.+.+|+.++... +..+.+++.|.|+..-
T Consensus         4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~-g~kV~lit~Dt~R~gA   52 (211)
T d2qy9a2           4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDTFRAAA   52 (211)
T ss_dssp             CCSCTTEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEECCCTTCHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEecccccccc
Confidence            345568899999999999999999999887755 5678888999888643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.81  E-value=4.2e-05  Score=71.87  Aligned_cols=47  Identities=23%  Similarity=0.262  Sum_probs=35.2

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ...+.+|+|+|++|+||||.+.+|+.++... |..+.+++.|.|+...
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~-g~kV~lit~Dt~R~ga   55 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKK-GFKVGLVGADVYRPAA   55 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHT-TCCEEEEECCCSSHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCceEEEEeeccccch
Confidence            3468899999999999999999999888765 4567888999887644

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.80  E-value=2.8e-05  Score=71.19  Aligned_cols=37  Identities=32%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ++|.|+|.+||||||+|+.|.+.     |  ..+++.|++.+..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~-----G--~~vidaD~i~~~l   39 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL-----G--VPLVDADVVAREV   39 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT-----T--CCEEEHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC-----C--CeEEEchHHHHHH
Confidence            68889999999999999988642     3  3577999886643

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.78  E-value=5.4e-05  Score=70.77  Aligned_cols=45  Identities=29%  Similarity=0.269  Sum_probs=37.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ++.+|+|+|++|+||||.+.+|+.++...+ ..+.+++.|.|+...
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g-~kV~lit~Dt~R~gA   53 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADTQRPAA   53 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTT-CCEEEEECCSSCHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCC-CcEEEEecccccchH
Confidence            456899999999999999999998888764 567788999887644

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=1.1e-05  Score=69.31  Aligned_cols=27  Identities=22%  Similarity=0.336  Sum_probs=24.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      +|+++|++|||||||++.|.+++.+.|
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g   30 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARG   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            789999999999999999999887665

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=2.7e-06  Score=79.15  Aligned_cols=24  Identities=25%  Similarity=0.283  Sum_probs=21.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..||||+|++|||||||.+.|.+.
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            358999999999999999999875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.71  E-value=5.2e-05  Score=71.02  Aligned_cols=46  Identities=17%  Similarity=0.228  Sum_probs=37.7

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +++.+|+|+|++|+||||.+.+|+.++... |..+.+++.|-|+..-
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~-g~kV~lit~Dt~R~gA   49 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDTFRAAG   49 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCCSSTTH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEeccccccc
Confidence            356699999999999999999999888765 4567788999887643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1.7e-05  Score=78.63  Aligned_cols=48  Identities=19%  Similarity=0.235  Sum_probs=39.3

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEeCCceeeeh
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS~DDyfr~~  227 (535)
                      +..++||.|+|.+||||||||+.|...+... .+..+.++++|+|+...
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~  125 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN  125 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCc
Confidence            4678999999999999999999999887433 23456788999998653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=9.5e-05  Score=66.28  Aligned_cols=28  Identities=25%  Similarity=0.426  Sum_probs=24.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      ++|++.|+.||||||+++.|.+++...|
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g   28 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAG   28 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            4899999999999999999999886654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=2.1e-05  Score=77.30  Aligned_cols=49  Identities=24%  Similarity=0.371  Sum_probs=38.3

Q ss_pred             CCCCcEEEEEEccCCChHHHHHHHHHHHHHHcC--CCCcEEEeCCceeeeh
Q 009432          179 TRPDHFAIILRGLPGSGKSYIAKMLRDLEVENG--GDAPRIHSMDDYFMTE  227 (535)
Q Consensus       179 ~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g--G~~~rIlS~DDyfr~~  227 (535)
                      ....|++|-|.|.+||||||||+.|...+.+..  ...+.++|+|||+...
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t~   73 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTH   73 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCCH
Confidence            345789999999999999999999887765532  2345678999998763

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.60  E-value=1.4e-05  Score=68.63  Aligned_cols=26  Identities=23%  Similarity=0.174  Sum_probs=23.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....|+|.|.|||||||||++|++++
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999999875

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.58  E-value=1.2e-05  Score=73.08  Aligned_cols=40  Identities=23%  Similarity=0.281  Sum_probs=32.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      ++++|.+.|+|||||||+|+.|++.+    |  ...+|.+|++|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~l----g--~~~istGdl~R~~   41 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDF----G--FTYLDTGAMYRAA   41 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHH----C--CEEEEHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh----C--CcEECHHHHHHHH
Confidence            45678888999999999999999987    2  3566889988853

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=1.3e-05  Score=72.00  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=31.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +|++-|+|||||||+|+.|++++    |  ...+|.+|++|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~----g--l~~iStGdLlR~~   41 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL----Q--WHLLDSGAIYRVL   41 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----T--CEEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh----C--CcEECHHHHHHHH
Confidence            78888999999999999999986    2  3567999998854

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=0.00017  Score=66.04  Aligned_cols=38  Identities=32%  Similarity=0.392  Sum_probs=30.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeeh
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTE  227 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~  227 (535)
                      +.+|.|+|.+||||||+|+.|.+.     |  ..+++.|.+.+..
T Consensus         3 k~iIgitG~igSGKStv~~~l~~~-----G--~~vidaD~i~~~l   40 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFADL-----G--INVIDADIIARQV   40 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT-----T--CEEEEHHHHHHHT
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHC-----C--CcEEEchHHHHHH
Confidence            468999999999999999988753     3  3678888887654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.45  E-value=7.9e-05  Score=68.25  Aligned_cols=49  Identities=12%  Similarity=0.161  Sum_probs=33.6

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      +|++|..-    -+...++++.|.||||||+||.+++.....++ ..+..++.+
T Consensus        15 LD~~l~GG----i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~-~~~~~is~e   63 (242)
T d1tf7a2          15 LDEMCGGG----FFKDSIILATGATGTGKTLLVSRFVENACANK-ERAILFAYE   63 (242)
T ss_dssp             HHHHTTSS----EESSCEEEEEECTTSSHHHHHHHHHHHHHTTT-CCEEEEESS
T ss_pred             HHHhhcCC----CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-cccceeecc
Confidence            55665521    12344999999999999999999988766554 344455544

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.31  E-value=0.00096  Score=57.58  Aligned_cols=23  Identities=35%  Similarity=0.536  Sum_probs=21.1

Q ss_pred             EEEEccCCChHHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      |+|+|.||||||||++.|+..+.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC
Confidence            78999999999999999998764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00023  Score=65.60  Aligned_cols=27  Identities=22%  Similarity=0.271  Sum_probs=23.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      +.++|++-|+-||||||+++.|.+++.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            356899999999999999999998863

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00014  Score=62.20  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=24.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      .|+|+|.||||||||++++...+...+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~   30 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGV   30 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence            5888999999999999999998876654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0006  Score=62.38  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=23.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |.+|++-|.-||||||++++|++.+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH
Confidence            6799999999999999999999875

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.18  E-value=0.00069  Score=61.24  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=27.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ++|++.|.+|||||||.++|.+.+.  .+....+++.|
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~--~~~~~~ivn~d   36 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLD   36 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh--hCCeEEEEecC
Confidence            5899999999999999999987652  23445566654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.00016  Score=63.18  Aligned_cols=28  Identities=21%  Similarity=0.209  Sum_probs=25.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      +|.++|.+|||||||+.+|..+|...|.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~   30 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGW   30 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence            7889999999999999999998877653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00043  Score=66.15  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=22.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+.-|+|.|+||+|||++|+.|+..+
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            45678899999999999999999764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.01  E-value=0.00064  Score=64.26  Aligned_cols=25  Identities=28%  Similarity=0.495  Sum_probs=21.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.=|+|.|+||+|||++|+.|+..+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcc
Confidence            4458899999999999999999763

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.00  E-value=0.00036  Score=62.21  Aligned_cols=39  Identities=10%  Similarity=0.156  Sum_probs=25.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ..+++|.|.||+|||+||.+++......++..+..++.+
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e   64 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE   64 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence            349999999999999999886543222333334444544

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.93  E-value=0.00017  Score=70.81  Aligned_cols=41  Identities=17%  Similarity=0.199  Sum_probs=31.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceee
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFM  225 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr  225 (535)
                      -||.++|.+||||||+|+.|.+.+...+ ..+.+++.|+|.+
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~-v~~~iI~~Dsfyr   45 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREG-VKAVSIEGDAFHR   45 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHT-CCEEEEEGGGGBS
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcC-CCeEEEeCCCCCc
Confidence            3899999999999999999988876553 4556889999975

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.87  E-value=0.00054  Score=64.95  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .+.-|+|.|+||+|||++|+.|+..
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCChhHHHHHHHHH
Confidence            3446899999999999999999975

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.78  E-value=0.00049  Score=62.98  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=20.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++++|+||+||||+|+.|+..+
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHhcc
Confidence            6789999999999999999764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00043  Score=59.94  Aligned_cols=39  Identities=18%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHc-CCCCcEEEe
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVEN-GGDAPRIHS  219 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~-gG~~~rIlS  219 (535)
                      .+.+.|+|.|++||||||+|++|...+.+. |++...++.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~   43 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFE   43 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECC
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEec
Confidence            356899999999999999999999988884 666655543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.00056  Score=62.77  Aligned_cols=28  Identities=29%  Similarity=0.310  Sum_probs=23.5

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ......++|+|+||+||||+|+.|+..+
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3444578999999999999999999763

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.71  E-value=0.0024  Score=58.91  Aligned_cols=25  Identities=20%  Similarity=0.339  Sum_probs=22.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHc
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVEN  210 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~  210 (535)
                      ++|+|.+|||||+|+++++..+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~   63 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKR   63 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccC
Confidence            6899999999999999999877654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.70  E-value=0.00023  Score=63.29  Aligned_cols=28  Identities=21%  Similarity=0.436  Sum_probs=25.0

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..++++|++.|..||||||+|+.|++.+
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999999999764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.0009  Score=63.34  Aligned_cols=25  Identities=36%  Similarity=0.598  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .+.-|+|.|+||+|||++|+.++..
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHHH
Confidence            3446899999999999999999975

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.00085  Score=63.89  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=22.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.+.-|+|.|+||+|||+||+.|+..+
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            344568899999999999999999764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.62  E-value=0.0025  Score=56.43  Aligned_cols=35  Identities=26%  Similarity=0.282  Sum_probs=25.2

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      ++|||+...-...-.+++++++.++.++.++.=.+
T Consensus       110 i~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~  144 (195)
T d1svia_         110 VQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA  144 (195)
T ss_dssp             EEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             hhhhhccccccccccccccccccccCcceechhhc
Confidence            67889876544555678888999999876555444

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.51  E-value=0.0008  Score=65.42  Aligned_cols=36  Identities=25%  Similarity=0.304  Sum_probs=26.3

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCce
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDY  223 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDy  223 (535)
                      .-|+|+|+||+|||.||++|++.+    +.....+++.+|
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~----~~~~~~i~~s~~   85 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLA----NAPFIKVEATKF   85 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH----TCCEEEEEGGGG
T ss_pred             ceEEEECCCCCCHHHHHHHHhhcc----ccchhccccccc
Confidence            356789999999999999999865    223344455444

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.51  E-value=0.00098  Score=61.05  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=20.0

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |+|.|+||+||||+|+.|++.+
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.42  E-value=0.011  Score=56.76  Aligned_cols=30  Identities=20%  Similarity=0.226  Sum_probs=24.9

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      ..++.+.|.+||||||||-+++......|+
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~aqk~g~   86 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQAQKAGG   86 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             ceEEEEecCCccchHHHHHHHHHHHHhCCC
Confidence            349999999999999999998877665554

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.40  E-value=0.0038  Score=53.98  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=19.1

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .|+|+|.+|+|||||.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999863

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0052  Score=58.76  Aligned_cols=31  Identities=16%  Similarity=0.134  Sum_probs=25.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      ...++.|.|.|||||||||-+++......|+
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~   83 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK   83 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCC
Confidence            3449999999999999999988877666654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.37  E-value=0.00083  Score=61.24  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.7

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .++|+|+||+||||+|+.|++.+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47899999999999999999865

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.20  E-value=0.0067  Score=56.35  Aligned_cols=39  Identities=15%  Similarity=0.072  Sum_probs=28.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ..|+|+.|.||+|||||+.+|+..+....|..+.+++.+
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            358999999999999999998865433334444455544

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.14  E-value=0.0019  Score=58.49  Aligned_cols=26  Identities=31%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      +-.++|.|.||+||||+|+.|++.+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHh
Confidence            44788999999999999999998764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0015  Score=55.99  Aligned_cols=22  Identities=23%  Similarity=0.143  Sum_probs=20.5

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +++|.|.|||||||||.+|+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            9999999999999999998864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.97  E-value=0.034  Score=50.42  Aligned_cols=34  Identities=12%  Similarity=0.156  Sum_probs=26.4

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEAT  318 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~  318 (535)
                      ++|||+..--..+-.+.+.+|..+|++..+|.++
T Consensus        95 vlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iN  128 (204)
T d2c78a3          95 ILVVSAADGPMPQTREHILLARQVGVPYIVVFMN  128 (204)
T ss_dssp             EEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEE
Confidence            9999997776667678899999999975444443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.91  E-value=0.0017  Score=59.20  Aligned_cols=26  Identities=27%  Similarity=0.176  Sum_probs=21.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .+++++|.||+||||+++.+++.+.+
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHHHh
Confidence            35667899999999999999987654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.0021  Score=58.36  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +||.|+||+||||+|+.|++.+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            6789999999999999998775

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0022  Score=57.91  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++|.|+||+||||+|+.|++.+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999998875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0022  Score=57.34  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             EEEEEEccCCChHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .+|||+|++|||||||+++|.+.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            36888999999999999999865

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0027  Score=57.45  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++|+|+||+||||+|+.|++.+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            6789999999999999999865

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0023  Score=58.33  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=20.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ++|.|+||+||||+|+.+++.+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            7799999999999999998765

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.65  E-value=0.0026  Score=63.55  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=25.0

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+++.+++++|+||+|||+||+.|+..+
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4666799999999999999999999875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.0076  Score=55.55  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=21.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      ..+||.|.||+||||+|+.+++.+.
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHhc
Confidence            3678999999999999999988763

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.34  E-value=0.0038  Score=52.17  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |+|+|.||+|||||.++|...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999998753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.0078  Score=59.25  Aligned_cols=40  Identities=23%  Similarity=0.370  Sum_probs=31.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      .+..+|-|+|.||||||||..+|...+...| ..+.|+..|
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g-~~vavlavD   91 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREG-LKVAVIAVD   91 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcC-CceeeecCC
Confidence            3477999999999999999999988887764 344455444

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.20  E-value=0.043  Score=54.05  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      -+.|.+-|.=||||||+++.|++.+
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC--
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHh
Confidence            3459999999999999999998764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.11  E-value=0.0059  Score=55.66  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .+|.|+|..||||||+|+.|++.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.01  E-value=0.0052  Score=52.65  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.3

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +=|+|+|.||||||||..+|..
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4488999999999999999873

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.96  E-value=0.032  Score=54.84  Aligned_cols=27  Identities=22%  Similarity=0.217  Sum_probs=22.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+-++++.|.||+|||.+|+.|+..+
T Consensus       121 ~~~g~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         121 YASGMVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             cCCceEEEECCCCccHHHHHHHHHHHh
Confidence            344567779999999999999999865

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.84  E-value=0.0075  Score=61.74  Aligned_cols=25  Identities=36%  Similarity=0.486  Sum_probs=22.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.=|+|+|++|||||.|||.|++.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHh
Confidence            3458999999999999999999864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.011  Score=57.30  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=22.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++++|++|+|||+||+.|++.+
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhc
Confidence            3467899999999999999999875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.0056  Score=54.46  Aligned_cols=34  Identities=24%  Similarity=0.036  Sum_probs=25.1

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHH
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +|.+|..-    -+...+++|.|.|||||||||-+++.
T Consensus        23 LD~ll~GG----i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          23 LDTLLGGG----VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             HHHHHTSS----EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             HHhhhCCC----CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            45666531    02233999999999999999998864

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0028  Score=57.21  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=22.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      -.+|++-|+-||||||+|+.|++.+
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999999865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.77  E-value=0.0082  Score=54.05  Aligned_cols=23  Identities=30%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +|+|.|.+|+|||+|++++++.+
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHC
Confidence            78899999999999999988753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.75  E-value=0.065  Score=46.15  Aligned_cols=35  Identities=9%  Similarity=0.155  Sum_probs=27.5

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEec
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEATY  319 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~  319 (535)
                      ++|+|+.......-..+..+++..+.++.++.-.+
T Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~  130 (186)
T d1mkya2          96 VIVLDATQGITRQDQRMAGLMERRGRASVVVFNKW  130 (186)
T ss_dssp             EEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred             EEeecccccchhhHHHHHHHHHHcCCceeeeccch
Confidence            77889877766777788888999999887766554

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0093  Score=53.44  Aligned_cols=35  Identities=17%  Similarity=-0.038  Sum_probs=26.6

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .|.+|..-    -+...+++++|.||||||+||.+++..
T Consensus        26 LD~~lgGG----ip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          26 FDKLLGGG----IESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             HHHHTTSS----BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             HHHhhcCC----CcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45666421    145569999999999999999999754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.72  E-value=0.13  Score=46.24  Aligned_cols=34  Identities=15%  Similarity=0.207  Sum_probs=25.7

Q ss_pred             EEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432          285 IVIVDDRNLRVADFAQFWATAKRSGYEVYILEAT  318 (535)
Q Consensus       285 ~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~  318 (535)
                      ++|||+.-.-..+=++.+.+|.+++.+-.+|.++
T Consensus        94 llVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iN  127 (196)
T d1d2ea3          94 ILVVAANDGPMPQTREHLLLARQIGVEHVVVYVN  127 (196)
T ss_dssp             EEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEe
Confidence            8899997765556667888999999876555554

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.70  E-value=0.0079  Score=49.77  Aligned_cols=20  Identities=30%  Similarity=0.693  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.||+|||||..+|..
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999999874

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.0089  Score=55.20  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ++||+|+-|||||||.+.|.+.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6899999999999999998763

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.66  E-value=0.0077  Score=54.25  Aligned_cols=35  Identities=26%  Similarity=0.165  Sum_probs=26.2

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .|.+|..-    -+...+++|.|.|||||||||-+++..
T Consensus        25 LD~ll~GG----lp~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          25 LDKLLGGG----IETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             HHHHHTSS----EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHhhcCC----ccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            45566431    134559999999999999999998764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.66  E-value=0.016  Score=56.85  Aligned_cols=40  Identities=25%  Similarity=0.386  Sum_probs=30.6

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      .+..+|-|+|.||+|||||..+|..++...| ..+.|+..|
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g-~~vaViavD   88 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAG-HKVAVLAVD   88 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcC-Cceeeeecc
Confidence            3467999999999999999999988776554 445555443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.66  E-value=0.069  Score=46.53  Aligned_cols=42  Identities=7%  Similarity=0.116  Sum_probs=27.6

Q ss_pred             HHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEE
Q 009432          275 TRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILE  316 (535)
Q Consensus       275 kkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe  316 (535)
                      ...+..-..-++|+|+......+-.+.+.+++.++.++.++.
T Consensus        77 ~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~  118 (179)
T d1wb1a4          77 VSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVI  118 (179)
T ss_dssp             HHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEE
T ss_pred             hhhhhhccccccccccccccchhhhhhhhhhhhcCCcceecc
Confidence            344443322267889877665555677888999999975554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.64  E-value=0.029  Score=53.69  Aligned_cols=32  Identities=28%  Similarity=0.292  Sum_probs=25.4

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHHHHcCC
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG  212 (535)
                      +...++.+.|.+||||||||-+++......++
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~   89 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGG   89 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCC
Confidence            34559999999999999999887766555554

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.55  E-value=0.012  Score=49.09  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=19.6

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +=|+|+|.||+|||||.++|..
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            4489999999999999999874

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.49  E-value=0.017  Score=56.99  Aligned_cols=25  Identities=28%  Similarity=0.243  Sum_probs=22.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+-|.+-|.=||||||+++.|++.+
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3459999999999999999999875

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.48  E-value=0.0042  Score=59.98  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             EEEEccCCChHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      |+|.|.||+|||||||.|...+
T Consensus        31 vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHS
T ss_pred             EEEECCCCccHHHHHHHHHHhC
Confidence            7999999999999999999754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.47  E-value=0.0077  Score=51.23  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=18.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .=|+|+|.+|+|||||..+|..
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3488999999999999999863

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.36  E-value=0.0091  Score=50.94  Aligned_cols=20  Identities=30%  Similarity=0.567  Sum_probs=18.2

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.++|..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            78999999999999999863

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.23  E-value=0.01  Score=51.14  Aligned_cols=19  Identities=37%  Similarity=0.452  Sum_probs=18.1

Q ss_pred             EEEEccCCChHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~  204 (535)
                      |+|+|.|++|||||..+|.
T Consensus         3 I~lvG~~nvGKSsLin~l~   21 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLT   21 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999986

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.19  E-value=0.04  Score=54.26  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=23.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ..+.|++-|.-||||||+++.|++.+
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l   30 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAA   30 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHh
Confidence            45679999999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.15  E-value=0.012  Score=52.00  Aligned_cols=36  Identities=19%  Similarity=0.039  Sum_probs=27.4

Q ss_pred             hhhhhcCCCCCCCCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          168 ALHLLKQPHRATRPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       168 ~~~ll~~p~r~~r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +|++|...    -+...+++|.|.||+|||+||.+++..+
T Consensus        23 LD~ll~GG----l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          23 LDSVLGGG----LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             HHHHTTSS----EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHhcCCC----ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56677532    1234599999999999999999998653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.13  E-value=0.016  Score=54.84  Aligned_cols=25  Identities=44%  Similarity=0.567  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...+|.|+|..|.||||||+.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999998754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.10  E-value=0.011  Score=51.82  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=19.1

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      -|+|+|.|++|||||..+|..
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578899999999999999974

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.012  Score=55.61  Aligned_cols=26  Identities=31%  Similarity=0.417  Sum_probs=22.2

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....|.++|.+|||||||++.|...+
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            34489999999999999999998653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.93  E-value=0.017  Score=52.26  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             EEEEEEccCCChHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .-|+++|.+|+||||+|-.|.++
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            46899999999999999888753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.93  E-value=0.012  Score=55.79  Aligned_cols=26  Identities=35%  Similarity=0.443  Sum_probs=22.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...+|.|+|.+|||||||++.|...+
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhccc
Confidence            34489999999999999999998653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.91  E-value=0.015  Score=54.75  Aligned_cols=26  Identities=31%  Similarity=0.402  Sum_probs=22.4

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...+|.++|..|||||||++.|...+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            44589999999999999999998653

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.035  Score=51.20  Aligned_cols=41  Identities=27%  Similarity=0.322  Sum_probs=33.3

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      +..+.|||++|=-|+||||+|-.|+..+.+.| ..+.++..|
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G-~rVllvD~D   57 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMG-FDVHLTTSD   57 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEESC
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CcEEEEeCC
Confidence            45567999999999999999999999888774 455566666

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.014  Score=50.36  Aligned_cols=20  Identities=25%  Similarity=0.504  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||++++..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999999864

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.80  E-value=0.024  Score=50.89  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=20.6

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..-|+++|.+|+||||+|-.|.++
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            357999999999999999888753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.018  Score=52.25  Aligned_cols=61  Identities=21%  Similarity=0.118  Sum_probs=36.9

Q ss_pred             CCceEEEEeCC-CCCHHHHHHHHHHHhhcCceEEEEEEecCCH----HHHHHhhc----CCCCHHHHHHHh
Q 009432          281 GNFTIVIVDDR-NLRVADFAQFWATAKRSGYEVYILEATYKDP----AGCAARNV----HGFTLDDIERMA  342 (535)
Q Consensus       281 G~f~~VIVDaT-N~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~----e~ci~RNi----h~VpeEvIe~M~  342 (535)
                      |.+.+||||.. .........++++..+..-.++||.++- +.    .+..-|-.    ...+.+.+....
T Consensus       107 ~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~-~~~~ll~tI~SRc~~i~~~~~~~~~~~~~L  176 (207)
T d1a5ta2         107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATR-EPERLLATLRSRCRLHYLAPPPEQYAVTWL  176 (207)
T ss_dssp             SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEES-CGGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred             CccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeec-ChhhhhhhhcceeEEEecCCCCHHHHHHHH
Confidence            44568888863 3356667778888888777777776653 33    23333422    256666665544

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.014  Score=55.24  Aligned_cols=25  Identities=40%  Similarity=0.489  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +..++.|+|..|||||||++.|...
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcc
Confidence            3448999999999999999999864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.67  E-value=0.017  Score=52.40  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=20.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..-|+++|.+|+||||+|-.|.+
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999988875

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.016  Score=54.56  Aligned_cols=25  Identities=28%  Similarity=0.503  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +..++.|.|..|||||||.+.|.-.
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            3458999999999999999999754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.016  Score=48.89  Aligned_cols=21  Identities=29%  Similarity=0.585  Sum_probs=18.7

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      =|+|+|.|++|||||.++|..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999999873

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.60  E-value=0.017  Score=49.72  Aligned_cols=20  Identities=25%  Similarity=0.316  Sum_probs=18.6

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.++|..
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            88999999999999999874

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.56  E-value=0.017  Score=54.67  Aligned_cols=25  Identities=36%  Similarity=0.503  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||++.|.-.
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            3458999999999999999999854

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.058  Score=49.44  Aligned_cols=27  Identities=30%  Similarity=0.379  Sum_probs=23.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      +-=+||+|.||.|||+++..|+.++.+
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHHHh
Confidence            335789999999999999999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.017  Score=50.37  Aligned_cols=19  Identities=21%  Similarity=0.282  Sum_probs=17.7

Q ss_pred             EEEEccCCChHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~  204 (535)
                      |+|+|.+|+|||||+++|.
T Consensus         8 i~ivG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            7889999999999999887

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.019  Score=49.22  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .|+|.|.|++|||||.++|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999973

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.47  E-value=0.019  Score=49.13  Aligned_cols=20  Identities=20%  Similarity=0.282  Sum_probs=18.3

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||..++..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.018  Score=49.85  Aligned_cols=20  Identities=35%  Similarity=0.476  Sum_probs=18.0

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||+|++++..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78899999999999998863

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.43  E-value=0.027  Score=48.29  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      +.+=|+|+|.+|+|||||.++|.
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh
Confidence            34568999999999999999886

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.42  E-value=0.019  Score=50.94  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=19.0

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      =|+|+|.||+|||||.++|..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            389999999999999999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.019  Score=49.41  Aligned_cols=20  Identities=30%  Similarity=0.594  Sum_probs=18.5

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.++|..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.39  E-value=0.019  Score=49.03  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.++|..
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.29  E-value=0.02  Score=49.22  Aligned_cols=20  Identities=25%  Similarity=0.449  Sum_probs=18.3

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.+++..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.28  E-value=0.019  Score=53.93  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +..++.|+|.+|||||||.+.|.-.
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCcchhhHhccCC
Confidence            4458999999999999999998754

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.25  E-value=0.02  Score=49.92  Aligned_cols=20  Identities=25%  Similarity=0.464  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.++|..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.24  E-value=0.02  Score=55.12  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=22.3

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      .+..+|.|+|..|||||||++.|...
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCC
Confidence            44558999999999999999999854

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.21  E-value=0.017  Score=54.23  Aligned_cols=25  Identities=16%  Similarity=0.390  Sum_probs=21.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +..++.|+|..|||||||.+.|.-.
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3458999999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=93.21  E-value=0.022  Score=48.69  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=18.0

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||..+|..
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            67889999999999999874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.15  E-value=0.021  Score=54.00  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.0

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +++|.|..|||||||.+.|.-.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            66788999999999999998653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.02  Score=54.08  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|.|.+|||||||++.|.-.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCC
Confidence            458999999999999999999754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.11  E-value=0.016  Score=50.08  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=19.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      +.+=|+|+|.||+|||||.++|.
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh
Confidence            34558899999999999999986

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.023  Score=48.70  Aligned_cols=20  Identities=20%  Similarity=0.272  Sum_probs=18.3

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||+|.+++..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999874

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.09  E-value=0.022  Score=53.81  Aligned_cols=26  Identities=35%  Similarity=0.523  Sum_probs=22.3

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|.|.+|||||||.+.|.-.+
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            34589999999999999999998653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.07  E-value=0.024  Score=49.10  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=19.4

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .|+|+|.+|+|||||.++|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            599999999999999999874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.022  Score=49.30  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=18.3

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||++++..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999863

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.03  E-value=0.28  Score=46.79  Aligned_cols=59  Identities=15%  Similarity=0.131  Sum_probs=40.3

Q ss_pred             HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHHHHHhhcccc
Q 009432          279 DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWEE  347 (535)
Q Consensus       279 k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvIe~M~krfE~  347 (535)
                      .++.  ++|||+..--..+-...|+.|++++.+..++.=.+ |.+       ..-..+++..+.+++..
T Consensus        95 ~D~a--vlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKm-Dr~-------~ad~~~~l~ei~~~l~~  153 (276)
T d2bv3a2          95 LDGA--IVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKM-DKT-------GADLWLVIRTMQERLGA  153 (276)
T ss_dssp             CCEE--EEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECT-TST-------TCCHHHHHHHHHHTTCC
T ss_pred             hhhe--EEeccccCCcchhHHHHHHHHHHcCCCEEEEEecc-ccc-------ccccchhHHHHHHHhCC
Confidence            4555  99999988888888889999999999975444333 211       12225566666666654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.00  E-value=0.033  Score=49.57  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=23.5

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...+|+|.|-=|||||||+|.|++.+
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            46799999999999999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.93  E-value=0.023  Score=54.11  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|+|..|||||||++.|.-.
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            4458999999999999999999753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.026  Score=48.66  Aligned_cols=20  Identities=35%  Similarity=0.414  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||..++..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999988864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.85  E-value=0.018  Score=52.52  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..++.|.|..|||||||.+.|+..
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcc
Confidence            348999999999999999999864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.027  Score=48.42  Aligned_cols=20  Identities=25%  Similarity=0.353  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||+|+++|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.82  E-value=0.026  Score=47.99  Aligned_cols=20  Identities=25%  Similarity=0.330  Sum_probs=18.6

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.+++..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.72  E-value=0.026  Score=48.86  Aligned_cols=20  Identities=35%  Similarity=0.524  Sum_probs=18.5

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.++|..
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.70  E-value=0.029  Score=48.64  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=20.5

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      .+.+=|+|+|.+|+|||||.++|.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            445668899999999999999885

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.68  E-value=0.016  Score=55.21  Aligned_cols=24  Identities=21%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHH
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ..+|.|+|.+|||||||++.|...
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhc
Confidence            348999999999999999998754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.06  Score=51.43  Aligned_cols=28  Identities=32%  Similarity=0.246  Sum_probs=23.7

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      .+-=+||+|.||.|||+++..|+.++.+
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence            3346789999999999999999988765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.03  Score=47.89  Aligned_cols=20  Identities=30%  Similarity=0.446  Sum_probs=18.2

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||+|++++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=92.60  E-value=0.018  Score=56.29  Aligned_cols=123  Identities=14%  Similarity=0.168  Sum_probs=63.1

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPEMEEA  265 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e~ee~  265 (535)
                      |+++|..|||||||.+.|....    ....+|+...|...-....            .   +.    +....+..+.   
T Consensus       169 ili~G~tgSGKTT~l~al~~~i----~~~~rivtiEd~~El~l~~------------~---~~----~~~~~~~~~~---  222 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFI----PKEERIISIEDTEEIVFKH------------H---KN----YTQLFFGGNI---  222 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGS----CTTCCEEEEESSCCCCCSS------------C---SS----EEEEECBTTB---
T ss_pred             EEEEeeccccchHHHHHHhhhc----ccccceeeccchhhhhccc------------c---cc----cceeccccch---
Confidence            7889999999999999998653    2233455544432211100            0   00    0011111111   


Q ss_pred             HHHHHHHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhc---------CCCCHH
Q 009432          266 YRSSMLKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNV---------HGFTLD  336 (535)
Q Consensus       266 ~~q~llk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNi---------h~VpeE  336 (535)
                         .+.+.++.+|+.. +..+||.=+-.. +.. .+++.+.. |-.-.+..+++.+....+.|=.         .+++.+
T Consensus       223 ---~~~~ll~~~lR~~-pd~iivgEiR~~-ea~-~~l~a~~t-Gh~g~~tT~Ha~s~~~a~~Rl~~l~~~~~~~~~~~~~  295 (323)
T d1g6oa_         223 ---TSADCLKSCLRMR-PDRIILGELRSS-EAY-DFYNVLCS-GHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFE  295 (323)
T ss_dssp             ---CHHHHHHHHTTSC-CSEEEESCCCST-HHH-HHHHHHHT-TCSCEEEEECCSSHHHHHHHHHHHHHTSGGGTTSCHH
T ss_pred             ---hHHHHHHHHhccC-CCcccCCccCch-hHH-HHHHHHHh-cCCcEEEEECCCCHHHHHHHHHHhcccchhhccCCHH
Confidence               1223345566665 468888776544 444 46665543 4332345555556665555422         145666


Q ss_pred             HHHHH
Q 009432          337 DIERM  341 (535)
Q Consensus       337 vIe~M  341 (535)
                      .+.+.
T Consensus       296 ~~~~~  300 (323)
T d1g6oa_         296 SLIEG  300 (323)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.031  Score=48.01  Aligned_cols=20  Identities=30%  Similarity=0.577  Sum_probs=18.5

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||+|++++..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.51  E-value=0.031  Score=47.81  Aligned_cols=20  Identities=35%  Similarity=0.385  Sum_probs=18.2

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.++|..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78889999999999999874

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.039  Score=48.28  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=20.8

Q ss_pred             CCcEE--EEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFA--IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~L--IIL~GLPGSGKSTLAr~L~e  205 (535)
                      +.+.+  |+|+|.+|+|||+|.+++..
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhh
Confidence            44455  89999999999999998864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.031  Score=47.81  Aligned_cols=20  Identities=25%  Similarity=0.335  Sum_probs=17.9

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.+++..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68899999999999998863

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.033  Score=48.17  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +=|+|+|-+|+|||+|.+++..
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3488999999999999998874

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.35  E-value=0.021  Score=54.05  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=21.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|.|.+|||||||.+.|.-.
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHcC
Confidence            3458999999999999999999864

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.33  E-value=0.059  Score=49.64  Aligned_cols=38  Identities=24%  Similarity=0.189  Sum_probs=31.3

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      +.+|++.|--|.||||+|..|+..+.+.| ..+-+++.|
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G-~rVLlvD~D   45 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQG-KRVLLVSTD   45 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEECC
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCC-CCEEEEeCC
Confidence            44778899999999999999999988775 455677777

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.31  E-value=0.011  Score=49.89  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=19.1

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |+|+|.|++|||||.++|...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.24  E-value=0.031  Score=48.52  Aligned_cols=19  Identities=47%  Similarity=0.586  Sum_probs=17.9

Q ss_pred             EEEEccCCChHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~  204 (535)
                      |||.|.+|+|||||.+++.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999994

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.036  Score=47.30  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.4

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .=|+|+|-+|+|||||.+++..
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4489999999999999999874

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.034  Score=47.25  Aligned_cols=20  Identities=15%  Similarity=0.268  Sum_probs=18.1

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|-+|+|||+|.+++..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67889999999999999874

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.19  E-value=0.034  Score=51.04  Aligned_cols=25  Identities=28%  Similarity=0.157  Sum_probs=21.6

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEV  208 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~  208 (535)
                      .+++|+|.||+||||||-.|+..+.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3888999999999999999887643

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.19  E-value=0.048  Score=46.78  Aligned_cols=25  Identities=20%  Similarity=0.402  Sum_probs=20.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      .++.=|+|+|.+|+|||+|.+++..
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3445589999999999999999874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.15  E-value=0.033  Score=49.11  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=18.3

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.++|..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78899999999999999874

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.037  Score=47.61  Aligned_cols=20  Identities=40%  Similarity=0.793  Sum_probs=18.0

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||+|++++..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78899999999999998864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.00  E-value=0.03  Score=47.51  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.0

Q ss_pred             CcEEEEEEccCCChHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ...=|+|+|.|++|||||.++|.
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHh
Confidence            34569999999999999999985

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.97  E-value=0.025  Score=48.92  Aligned_cols=19  Identities=32%  Similarity=0.518  Sum_probs=17.7

Q ss_pred             EEEEccCCChHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~  204 (535)
                      |.|+|.|++|||||.++|.
T Consensus         4 VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7789999999999999986

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.87  E-value=0.029  Score=48.67  Aligned_cols=19  Identities=32%  Similarity=0.548  Sum_probs=17.7

Q ss_pred             EEEEccCCChHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~  204 (535)
                      |.|+|.|++|||||.++|.
T Consensus         4 VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSE
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999986

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.039  Score=47.15  Aligned_cols=20  Identities=30%  Similarity=0.463  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|-+|+|||||..+|..
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999999874

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.84  E-value=0.04  Score=47.48  Aligned_cols=20  Identities=30%  Similarity=0.401  Sum_probs=18.1

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.+++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999999864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.82  E-value=0.04  Score=53.43  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=22.0

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+++++|++|+|||.+|+.|++.+
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHHHh
Confidence            378899999999999999999986

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=91.76  E-value=0.44  Score=45.01  Aligned_cols=57  Identities=16%  Similarity=0.239  Sum_probs=39.6

Q ss_pred             HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHHHHHhhccc
Q 009432          279 DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQWE  346 (535)
Q Consensus       279 k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvIe~M~krfE  346 (535)
                      .++.  ++|||++.--..+-.+.|++|++++.+..++.-.+ |      |.  ....+++..+..++-
T Consensus        91 ~D~a--vlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~-D------~~--~~~~~~l~~~~~~lg  147 (267)
T d2dy1a2          91 ADAA--LVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKL-D------KG--GDYYALLEDLRSTLG  147 (267)
T ss_dssp             CSEE--EEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECG-G------GC--CCHHHHHHHHHHHHC
T ss_pred             cCce--EEEeeccCCccchhHHHHHhhhhcccccccccccc-c------cc--ccchhhhhhHHHHhc
Confidence            4566  99999998877788889999999999986654433 2      21  223455666666664

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.044  Score=46.83  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=18.8

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      =|+|+|-+|+|||+|.+++..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999999874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.72  E-value=0.039  Score=52.06  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|.|+.|||||||++.|.-.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCC
Confidence            4458999999999999999999754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.026  Score=48.72  Aligned_cols=20  Identities=25%  Similarity=0.468  Sum_probs=8.3

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.++|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78889999999999988764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=91.61  E-value=0.041  Score=51.59  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=21.9

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +..++.|.|+.|||||||.+.|.-.
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4458999999999999999999754

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.52  E-value=0.27  Score=44.17  Aligned_cols=102  Identities=14%  Similarity=0.110  Sum_probs=58.6

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCCceeeehhccccccccccccCCccCCcchhhhhhhccCchH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMDDYFMTEVEKVEDSDVSKSSGSLRSKKPVTKMVMEYCYEPE  261 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~DDyfr~~~e~v~~~~~sk~~g~~r~kk~l~kkv~ey~y~~e  261 (535)
                      ...-+++.|.||+||||+|+.+.+.+......     +. |++....++                +.+.           
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~-----h~-D~~~i~~~~----------------~~I~-----------   60 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPK-----AS-DVLEIDPEG----------------ENIG-----------   60 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCC-----TT-TEEEECCSS----------------SCBC-----------
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccC-----CC-CEEEEeCCc----------------CCCC-----------
Confidence            35579999999999999999999865321110     12 232221110                0000           


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCceEEEEeC-CCCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432          262 MEEAYRSSMLKAFTRTLDEGNFTIVIVDD-RNLRVADFAQFWATAKRSGYEVYILEAT  318 (535)
Q Consensus       262 ~ee~~~q~llk~akkaLk~G~f~~VIVDa-TN~~~~~R~~f~~LAr~~G~~V~vIe~~  318 (535)
                      .+ ..+. +.+.+...-..|.+.+||||. -..+...-..+.+...+..-.++||.++
T Consensus        61 Id-~IR~-i~~~~~~~~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit  116 (198)
T d2gnoa2          61 ID-DIRT-IKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNT  116 (198)
T ss_dssp             HH-HHHH-HHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred             HH-HHHH-HHHHHhhCcccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeecc
Confidence            01 1221 222222111235556898974 5566777888899999887777777665

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.51  E-value=0.039  Score=51.11  Aligned_cols=28  Identities=21%  Similarity=0.428  Sum_probs=25.3

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      .+++-+|++.|+|++|||+||..|.+.+
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            3777899999999999999999999875

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.41  E-value=0.045  Score=50.48  Aligned_cols=17  Identities=24%  Similarity=0.319  Sum_probs=12.8

Q ss_pred             EEEEccCCChHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKM  202 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~  202 (535)
                      +++.|.|||||||++-.
T Consensus        17 ~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             EEECCCTTSCHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHH
Confidence            34559999999987543

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.38  E-value=0.045  Score=49.65  Aligned_cols=20  Identities=45%  Similarity=0.546  Sum_probs=18.2

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |||.|+.|+|||||.+++..
T Consensus         9 illlG~~~vGKTsll~~~~~   28 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.052  Score=46.59  Aligned_cols=20  Identities=25%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|-+|+|||+|.+++..
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.052  Score=46.80  Aligned_cols=20  Identities=15%  Similarity=0.293  Sum_probs=17.6

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|-+|+|||+|..++..
T Consensus         5 ivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57789999999999988874

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.17  E-value=0.051  Score=46.42  Aligned_cols=20  Identities=30%  Similarity=0.371  Sum_probs=18.0

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||+|..++..
T Consensus         6 i~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            77899999999999999874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.052  Score=46.24  Aligned_cols=20  Identities=25%  Similarity=0.368  Sum_probs=17.8

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.+++..
T Consensus         7 v~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67789999999999999864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.07  E-value=0.053  Score=46.68  Aligned_cols=20  Identities=25%  Similarity=0.370  Sum_probs=18.0

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||||.+++..
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            77899999999999999874

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.03  E-value=0.1  Score=47.05  Aligned_cols=65  Identities=8%  Similarity=0.064  Sum_probs=37.9

Q ss_pred             HHHHHHHHHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEecCCHHHHHHhhcCCCCHHHHHHHhhcc
Q 009432          271 LKAFTRTLDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEATYKDPAGCAARNVHGFTLDDIERMAGQW  345 (535)
Q Consensus       271 lk~akkaLk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~~~d~e~ci~RNih~VpeEvIe~M~krf  345 (535)
                      ...+...++.|+  .+|+|-.- .     .+..+ +..+..+++|.+..++.+.+.++. ...+++.++++..+.
T Consensus        88 ~~~i~~~~~~gk--~~lldid~-~-----g~~~l-k~~~~~~i~IfI~pps~e~l~~l~-kr~~~~~i~~r~~~~  152 (199)
T d1kjwa2          88 VQSVREVAEQGK--HCILDVSA-N-----AVRRL-QAAHLHPIAIFIRPRSLENVLEIN-KRITEEQARKAFDRA  152 (199)
T ss_dssp             HHHHHHHHHTTC--EEEECCCT-T-----HHHHH-HHTTCCCEEEEECCSSHHHHHHHC-TTSCHHHHHHHHHHH
T ss_pred             eeEEEehhcCCC--cccccccc-h-----HHhhh-hhhccceeEEeeccccHHHHHhhh-ccccHHHHHHHHHHH
Confidence            445677889999  99998632 1     22222 333455566777654566554433 445666666665443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.054  Score=46.76  Aligned_cols=19  Identities=37%  Similarity=0.649  Sum_probs=17.8

Q ss_pred             EEEEccCCChHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~  204 (535)
                      |+|+|.+|+|||+|++++.
T Consensus         6 v~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999999886

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=90.91  E-value=0.042  Score=51.08  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=21.8

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      ...++.|.|..|||||||.+.|.-.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4558999999999999999999863

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=90.85  E-value=0.072  Score=52.76  Aligned_cols=22  Identities=41%  Similarity=0.613  Sum_probs=20.3

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      -|+|+|+.|+|||-+||+|++.
T Consensus        70 niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeeeCCCCccHHHHHHHHHhh
Confidence            4899999999999999999976

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.70  E-value=0.063  Score=46.14  Aligned_cols=22  Identities=36%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      =|||.|..|+|||+|.+++...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=90.54  E-value=0.07  Score=53.28  Aligned_cols=28  Identities=29%  Similarity=0.203  Sum_probs=24.0

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ....=+||++|..||||||....+.+.+
T Consensus       155 ~~~~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         155 KRPHGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hhhhceEEEEcCCCCCccHHHHHHhhhh
Confidence            4455699999999999999999988765

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.54  E-value=0.091  Score=49.03  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=14.8

Q ss_pred             EEEEccCCChHHHHHH-HHHHH
Q 009432          186 IILRGLPGSGKSYIAK-MLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr-~L~e~  206 (535)
                      +++.|.|||||||.+- +++..
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~l   48 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYL   48 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHHHHH
Confidence            4556999999998764 34443

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.076  Score=46.06  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=21.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+.+=|+|+|-+|+|||+|.+++..
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHh
Confidence            3445699999999999999999875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=90.51  E-value=0.061  Score=50.36  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.1

Q ss_pred             CcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          182 DHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       182 ~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      ...++.|.|+.|||||||.+.|.-.+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34489999999999999999998643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.46  E-value=0.075  Score=49.59  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=21.9

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ...+-|+|+|.+|+|||||...|..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC
Confidence            4567799999999999999999973

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=0.044  Score=47.29  Aligned_cols=20  Identities=30%  Similarity=0.416  Sum_probs=17.4

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      |+|+|.+|+|||+|..++..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999988764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.13  E-value=0.092  Score=51.82  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=20.7

Q ss_pred             EEEEEEccCCChHHHHHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      -++||.|.||+||||++..+...+..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~l~~  189 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAALIQ  189 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHHHHHH
Confidence            48899999999999998776555443

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.02  E-value=0.2  Score=49.96  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=20.9

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      +||+|.||.|||+++..|+.++++
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i~~   69 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRIVK   69 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHHHh
Confidence            477899999999999999888765

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.95  E-value=0.081  Score=45.20  Aligned_cols=21  Identities=38%  Similarity=0.532  Sum_probs=19.0

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |||.|..|+|||+|.+++...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            799999999999999998754

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.86  E-value=0.18  Score=44.52  Aligned_cols=38  Identities=24%  Similarity=0.240  Sum_probs=29.7

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      +.|.|..|-.|+||||+|..|+..+.+.| ..+.++..|
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g-~~VlliD~D   39 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLG-HDVTIVDAD   39 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTT-CCEEEEECC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCC-CCEEEEeCC
Confidence            46777789999999999999999988764 455555555

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.75  E-value=0.083  Score=45.99  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=18.7

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      =|||+|-+|+|||+|.+++..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.75  E-value=0.076  Score=50.44  Aligned_cols=27  Identities=26%  Similarity=0.263  Sum_probs=24.2

Q ss_pred             CCcEEEEEEccCCChHHHHHHHHHHHH
Q 009432          181 PDHFAIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       181 ~~~~LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +++.+|++.|.+++|||+|+..|...+
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            677899999999999999999999763

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.087  Score=46.07  Aligned_cols=21  Identities=14%  Similarity=0.170  Sum_probs=18.6

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      =|+|+|-+|+|||+|.+++..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999988874

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=88.87  E-value=0.57  Score=42.73  Aligned_cols=38  Identities=16%  Similarity=0.082  Sum_probs=30.0

Q ss_pred             HcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEEEe
Q 009432          279 DEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILEAT  318 (535)
Q Consensus       279 k~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe~~  318 (535)
                      .++.  ++|||+...-..+-.+.+.+|+.+|++-.+|.++
T Consensus       113 aD~a--ilVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vN  150 (222)
T d1zunb3         113 CDLA--IILVDARYGVQTQTRRHSYIASLLGIKHIVVAIN  150 (222)
T ss_dssp             CSEE--EEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CceE--EEEeccccCcccchHHHHHHHHHcCCCEEEEEEE
Confidence            4455  8899998777777788899999999886666665

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.80  E-value=0.28  Score=43.15  Aligned_cols=38  Identities=21%  Similarity=0.208  Sum_probs=29.4

Q ss_pred             cEEEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          183 HFAIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       183 ~~LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      ++|.|+.+-.|+||||+|..|+..+.+.| ..+.++..|
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g-~~VlliD~D   40 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRG-RKVLAVDGD   40 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTT-CCEEEEECC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCC-CCEEEEeCC
Confidence            45667779999999999999999988754 455555554

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.77  E-value=0.14  Score=44.70  Aligned_cols=22  Identities=23%  Similarity=0.217  Sum_probs=19.2

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +=|+|+|.+|+|||||..++..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3488999999999999998874

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=87.46  E-value=0.2  Score=48.76  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=23.8

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHHcCCCCcEEE
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVENGGDAPRIH  218 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIl  218 (535)
                      ++++|.+|||||++++.|...+...|. ...|+
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~~~~g~-~~iii   84 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTGLLRGD-RMVIV   84 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTC-EEEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHHhCCC-CEEEE
Confidence            688999999999999887766666543 33344

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=86.66  E-value=0.29  Score=42.27  Aligned_cols=28  Identities=18%  Similarity=0.169  Sum_probs=23.3

Q ss_pred             EEEEEcc-CCChHHHHHHHHHHHHHHcCC
Q 009432          185 AIILRGL-PGSGKSYIAKMLRDLEVENGG  212 (535)
Q Consensus       185 LIIL~GL-PGSGKSTLAr~L~e~l~e~gG  212 (535)
                      -+.++|= +|.||||++-.|+..+.+.|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~   31 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGY   31 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCC
Confidence            3667887 599999999999999988753

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=86.40  E-value=0.051  Score=45.61  Aligned_cols=23  Identities=26%  Similarity=0.225  Sum_probs=20.2

Q ss_pred             EEEEEccCCChHHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLE  207 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l  207 (535)
                      +.||+|..||||||+..+|.-.+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            77899999999999999998543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.20  E-value=0.18  Score=47.02  Aligned_cols=20  Identities=30%  Similarity=0.509  Sum_probs=18.5

Q ss_pred             EEEEEccCCChHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLR  204 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~  204 (535)
                      ..+|+|.+|.|||||..+|.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHhhc
Confidence            67899999999999999986

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.93  E-value=0.2  Score=45.44  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=19.3

Q ss_pred             EEEEEccCCChHHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~  206 (535)
                      +|.+.|.|.+|||||...|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            3788899999999999998764

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.39  E-value=0.2  Score=40.05  Aligned_cols=27  Identities=19%  Similarity=0.170  Sum_probs=19.2

Q ss_pred             EEEEEEccCCChHHHHHH-HHHHHHHHc
Q 009432          184 FAIILRGLPGSGKSYIAK-MLRDLEVEN  210 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr-~L~e~l~e~  210 (535)
                      ..+||++.+|||||+.|- .+.....+.
T Consensus         8 ~~~il~~~tGsGKT~~~~~~~~~~~~~~   35 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRFLPQILAECARR   35 (140)
T ss_dssp             CEEEECCCTTSSTTTTHHHHHHHHHHHT
T ss_pred             CcEEEEcCCCCChhHHHHHHHHHHhhhc
Confidence            467889999999997774 445544443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.34  E-value=0.22  Score=46.19  Aligned_cols=21  Identities=29%  Similarity=0.732  Sum_probs=18.4

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |+|.|-+|+||+++|+.|...
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHHh
Confidence            567799999999999999764

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.36  E-value=1  Score=43.89  Aligned_cols=37  Identities=14%  Similarity=0.148  Sum_probs=29.4

Q ss_pred             HHcCCceEEEEeCCCCCHHHHHHHHHHHhhcCceEEEEE
Q 009432          278 LDEGNFTIVIVDDRNLRVADFAQFWATAKRSGYEVYILE  316 (535)
Q Consensus       278 Lk~G~f~~VIVDaTN~~~~~R~~f~~LAr~~G~~V~vIe  316 (535)
                      +.+|.  ++|||++-.-..+-.+.++.|.+.+.++.++.
T Consensus       119 ~~D~a--llVVda~eGv~~qT~~~~~~a~~~~~p~i~vi  155 (341)
T d1n0ua2         119 VTDGA--LVVVDTIEGVCVQTETVLRQALGERIKPVVVI  155 (341)
T ss_dssp             TCSEE--EEEEETTTBSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hcCce--EEEEecccCcchhHHHHHHHHHHcCCCeEEEE
Confidence            35677  99999988776777788889999999885554

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=82.58  E-value=0.62  Score=42.37  Aligned_cols=36  Identities=22%  Similarity=0.204  Sum_probs=28.4

Q ss_pred             EEEEEccCCChHHHHHHHHHHHHHHcCCCCcEEEeCC
Q 009432          185 AIILRGLPGSGKSYIAKMLRDLEVENGGDAPRIHSMD  221 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e~l~e~gG~~~rIlS~D  221 (535)
                      .|.++|==|.||||+|-.|+..+.+.| ..+-++..|
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G-~rVllID~D   38 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMG-KTIMVVGCD   38 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTT-CCEEEEEEC
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCC-CcEEEEecC
Confidence            455689999999999999999988764 455566665

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=82.57  E-value=0.43  Score=44.48  Aligned_cols=26  Identities=27%  Similarity=0.558  Sum_probs=22.7

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHH
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ....+-|+++|.|.+|||||...|..
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCceEEEEEecCccchhhhhhhhhc
Confidence            34667899999999999999999974

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.16  E-value=0.34  Score=44.75  Aligned_cols=28  Identities=25%  Similarity=0.185  Sum_probs=21.7

Q ss_pred             EEEEEEccCCChHHHHHHHH--HHHHHHcC
Q 009432          184 FAIILRGLPGSGKSYIAKML--RDLEVENG  211 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L--~e~l~e~g  211 (535)
                      .++||+|+.+|||||+.|.+  .-.+...|
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~~~laq~G   71 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALIALMAYIG   71 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHTTT
T ss_pred             eEEEEeccCchhhHHHHHHHHHHHHHHHcC
Confidence            48999999999999999995  33444443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=81.95  E-value=0.35  Score=45.14  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=19.1

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      =|-|+|+|.+|||||-.+|..
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHC
Confidence            478999999999999999985

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.91  E-value=0.26  Score=45.38  Aligned_cols=21  Identities=33%  Similarity=0.408  Sum_probs=18.8

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +-||+|..||||||+..+|.-
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            789999999999999988853

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=81.37  E-value=2.9  Score=38.46  Aligned_cols=32  Identities=28%  Similarity=0.287  Sum_probs=24.8

Q ss_pred             CCCcEEEEEEccCCChHHHHHHHHHHHHHHcC
Q 009432          180 RPDHFAIILRGLPGSGKSYIAKMLRDLEVENG  211 (535)
Q Consensus       180 r~~~~LIIL~GLPGSGKSTLAr~L~e~l~e~g  211 (535)
                      .+.++..+|+|-.|||||-+|-.......++|
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g  104 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH  104 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT
T ss_pred             ccCccCeEEEcCCCCCcHHHHHHHHHHHHHcC
Confidence            45567889999999999999977665555554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=81.34  E-value=0.19  Score=46.95  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=18.4

Q ss_pred             EEEEEccCCChHHHHHHHHHH
Q 009432          185 AIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      ..+|+|.+|.|||||..+|..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC
T ss_pred             eEEEECCCCccHHHHHHhhcc
Confidence            457889999999999999864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=81.22  E-value=0.37  Score=45.46  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.9

Q ss_pred             EEEEEEccCCChHHHHHHHHHH
Q 009432          184 FAIILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       184 ~LIIL~GLPGSGKSTLAr~L~e  205 (535)
                      +-|-|+|+|.+|||||-.+|..
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHC
Confidence            4589999999999999999985

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=81.07  E-value=0.36  Score=45.52  Aligned_cols=21  Identities=29%  Similarity=0.246  Sum_probs=18.3

Q ss_pred             EEEEccCCChHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDL  206 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~  206 (535)
                      |-|+|+|.+|||||-.+|...
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            679999999999999999643

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=80.99  E-value=1  Score=43.19  Aligned_cols=24  Identities=13%  Similarity=0.177  Sum_probs=19.3

Q ss_pred             EEEEccCCChHHHHHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRDLEVE  209 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e~l~e  209 (535)
                      +.|.|.+|+|||+|+..|......
T Consensus        46 ~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          46 GLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHhh
Confidence            456788999999999999876543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=80.81  E-value=0.41  Score=43.98  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             EEEEEccCCChHHHHHHHH--HHHHHHcC
Q 009432          185 AIILRGLPGSGKSYIAKML--RDLEVENG  211 (535)
Q Consensus       185 LIIL~GLPGSGKSTLAr~L--~e~l~e~g  211 (535)
                      ++||+|+.+|||||+.|.+  ...+.+.|
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~~ilAq~G   65 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALIALLAQVG   65 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHHHTTT
T ss_pred             EEEEECCCccccchhhhhhHHHHHHHhcc
Confidence            7899999999999999985  34444443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.54  E-value=0.75  Score=39.57  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=15.6

Q ss_pred             EEEEccCCChHHHHHHHHHH
Q 009432          186 IILRGLPGSGKSYIAKMLRD  205 (535)
Q Consensus       186 IIL~GLPGSGKSTLAr~L~e  205 (535)
                      +|++++.|||||.+|-.+..
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            45779999999987766544