Citrus Sinensis ID: 009446

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
Protein Sequence
MASEDGDAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVSYMFNWQYIQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHcccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHcHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHcHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
masedgdavlsdvegeidvqtssdedfSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVtkardgsrsqldevTKAKDGLRSEIENSAHMLVTGIEKIsgkvsnfknfsagglprsqkytglpaVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIvddgnldqsglseslflpqetdmeENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSkrmsvdpssktNELFKVAENGLREAGIDFKFSKllsdgkvpvsddkanameTEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVSYMFNWQYIQ
Flexible Loop (DISEMBL)
masedgdavlsdvegeidvqtssdedfsvERFREVLAELNRERQAreaaensatelsekfnRLKAlahesikrrdestrqrdealrekeeilrsndklsteiaevniakdevvkqldevtkardgsrsqldevtkakdglrseiensAHMLVTGIEKISGKVSNFKNFSagglprsqkytgLPAVVYGVIKRTNEIVEELVGqidataksrndvREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDlvqkksrevkslneavgqlvkekeHIVSLLRSalskrmsvdpssktnELFKVAENGLREAGIDFKfskllsdgkvpvsDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEEleekerianesvsymfnwqyiq
Low Complexity Region (SEG)
MASEDGDAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSkihdqvddiikivddGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMkrieeleekeriANESVSYMFNWQYIQ
Disordered region (IsUnstruct)
****************************************************************************************************************************************************HMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDA****************FEIAIEVSELEATI************************************ELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL*********************RASLAGMESIYQLTRIVVEKTRDLV****************LV****HIVSL*********************KVAENGLREAGIDFKFSKLL********************EIYNLAGALENIVKASQLEIVELRH*******************************************VSYMFNWQY**
Disordered Region (DISOPRED)
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************MFNWQYI*
Disordered Region (DISEMBL)
**********SDVEGEIDVQTSSDEDFSVERFREVLAELNRE*************LSEKFNRLKALAHES***************REKEEILRSNDKLSTEIAEVNIAKDEVVKQLDE******************KDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSA************TNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVSYMFNWQYIQ
Disordered Region (DISPRO)
************V*G*IDVQ*SSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGK*********AMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVSYMFNWQYIQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASEDGDAVLSDVEGEIDVQTSSDEDFSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAHESIKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVxxxxxxxxxxxxxxxxxxxxxISGLREEVAKKSSFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxERIANESVSYMFNWQYIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
359473118	696	PREDICTED: uncharacterized protein At3g4	0.962	0.738	0.712	0.0
296081381	765	unnamed protein product [Vitis vinifera]	0.897	0.626	0.693	0.0
449494601	694	PREDICTED: uncharacterized LOC101212666	0.966	0.743	0.662	0.0
449463814	694	PREDICTED: uncharacterized protein LOC10	0.966	0.743	0.660	0.0
147817262	730	hypothetical protein VITISV_030267 [Viti	0.940	0.687	0.634	0.0
255548010	684	Paramyosin, putative [Ricinus communis]	0.953	0.744	0.655	0.0
224100127	521	predicted protein [Populus trichocarpa]	0.928	0.952	0.678	0.0
224107739	673	predicted protein [Populus trichocarpa]	0.925	0.734	0.668	0.0
356525423	661	PREDICTED: uncharacterized protein At3g4	0.910	0.735	0.604	1e-173
356512652	661	PREDICTED: uncharacterized protein At3g4	0.902	0.729	0.595	1e-169

>gi|359473118|ref|XP_002285440.2| PREDICTED: uncharacterized protein At3g49055-like [Vitis vinifera]

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/542 (71%), Positives = 450/542 (83%), Gaps = 28/542 (5%)

Query: 4   EDGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELS 57
           ED DAVLSDVEG+      I ++  S ED SVERFRE+LAE++RERQAREAAENS +EL 
Sbjct: 7   EDADAVLSDVEGDDPVPVPIVIKNPSQEDVSVERFRELLAEVDRERQAREAAENSKSELL 66

Query: 58  EKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD 117
             FNRLK+LAHE+IK+RDESTRQRDEALREKEE+LRSNDK+S E+AE    KDEV+KQ D
Sbjct: 67  VAFNRLKSLAHEAIKKRDESTRQRDEALREKEEVLRSNDKVSGELAEAIKLKDEVLKQRD 126

Query: 118 EVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ 177
           E+ K       QLDE  KA++  RSEIE SA MLVTGIEKISGKVSNFKNF+AGGLPRSQ
Sbjct: 127 EIAK-------QLDEAVKAREASRSEIETSAQMLVTGIEKISGKVSNFKNFTAGGLPRSQ 179

Query: 178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237
           KYTGLPA+ YGVIKRTNEIVEELV Q+DAT KSRND REQME RN+EIAIEVS+LEATIS
Sbjct: 180 KYTGLPAIAYGVIKRTNEIVEELVRQMDATTKSRNDAREQMEHRNYEIAIEVSQLEATIS 239

Query: 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIE-----------SQGLELRQLVNEYEDKLK 286
           GLREEV+KK+S +EN+EKS+ EKD K++++E           ++  EL+Q+V+EY+ KL 
Sbjct: 240 GLREEVSKKTSVVENVEKSMAEKDAKISDMEREMSEKIQLAENEMSELKQIVSEYDLKLG 299

Query: 287 NLES----HRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENI 342
           NLES     R LL DQLN VSKIHD++ D+I+IVDD  LDQS +SESLFLPQ TDMEENI
Sbjct: 300 NLESIMESQRHLLFDQLNLVSKIHDRIYDVIRIVDDNKLDQSEVSESLFLPQATDMEENI 359

Query: 343 RASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKR 402
           RASLAGMESIY+LTRIV EK R+L++ +SRE KSLNE V +LVKEKE I S LRSALS+R
Sbjct: 360 RASLAGMESIYELTRIVGEKIRNLMEDQSREAKSLNETVTRLVKEKEQIGSFLRSALSRR 419

Query: 403 MSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAG 462
           M++DPSSK  ELF+VAENGLREAGI+FKFS LL DGKV  S DKA  +ETEEDE+YN+ G
Sbjct: 420 MALDPSSKMKELFQVAENGLREAGIEFKFSNLLEDGKVMASHDKAGVLETEEDELYNMTG 479

Query: 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANE 522
           ALE+IVKASQLEI+EL+HSV+ELRAESSLLKEH+EAQAKEL+HR +RIEELEEKER+ANE
Sbjct: 480 ALEHIVKASQLEIIELQHSVDELRAESSLLKEHMEAQAKELNHRQRRIEELEEKERVANE 539

Query: 523 SV 524
           SV
Sbjct: 540 SV 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081381|emb|CBI16814.3| unnamed protein product [Vitis vinifera]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/531 (69%), Positives = 422/531 (79%), Gaps = 52/531 (9%)

Query: 4   EDGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELS 57
           ED DAVLSDVEG+      I ++  S ED SVERFRE+LAE++RERQAREAAENS +EL 
Sbjct: 122 EDADAVLSDVEGDDPVPVPIVIKNPSQEDVSVERFRELLAEVDRERQAREAAENSKSELL 181

Query: 58  EKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD 117
             FNRLK+LAHE+IK+RDESTRQRDEALREKEE+LRSNDK              V+KQ D
Sbjct: 182 VAFNRLKSLAHEAIKKRDESTRQRDEALREKEEVLRSNDK--------------VLKQRD 227

Query: 118 EVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ 177
           E+ K       QLDE  KA++  RSEIE SA MLVTGIEKISGKVSNFKNF+AGGLPRSQ
Sbjct: 228 EIAK-------QLDEAVKAREASRSEIETSAQMLVTGIEKISGKVSNFKNFTAGGLPRSQ 280

Query: 178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237
           KYTGLPA+ YGVIKRTNEIVEELV Q+DAT KSRND REQME RN+EIAIEVS+LEATIS
Sbjct: 281 KYTGLPAIAYGVIKRTNEIVEELVRQMDATTKSRNDAREQMEHRNYEIAIEVSQLEATIS 340

Query: 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLES----HRP 293
           GLREE+                   ++AE E    EL+Q+V+EY+ KL NLES     R 
Sbjct: 341 GLREEI-------------------QLAENEMS--ELKQIVSEYDLKLGNLESIMESQRH 379

Query: 294 LLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIY 353
           LL DQLN VSKIHD++ D+I+IVDD  LDQS +SESLFLPQ TDMEENIRASLAGMESIY
Sbjct: 380 LLFDQLNLVSKIHDRIYDVIRIVDDNKLDQSEVSESLFLPQATDMEENIRASLAGMESIY 439

Query: 354 QLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNE 413
           +LTRIV EK R+L++ +SRE KSLNE V +LVKEKE I S LRSALS+RM++DPSSK  E
Sbjct: 440 ELTRIVGEKIRNLMEDQSREAKSLNETVTRLVKEKEQIGSFLRSALSRRMALDPSSKMKE 499

Query: 414 LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQL 473
           LF+VAENGLREAGI+FKFS LL DGKV  S DKA  +ETEEDE+YN+ GALE+IVKASQL
Sbjct: 500 LFQVAENGLREAGIEFKFSNLLEDGKVMASHDKAGVLETEEDELYNMTGALEHIVKASQL 559

Query: 474 EIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESV 524
           EI+EL+HSV+ELRAESSLLKEH+EAQAKEL+HR +RIEELEEKER+ANESV
Sbjct: 560 EIIELQHSVDELRAESSLLKEHMEAQAKELNHRQRRIEELEEKERVANESV 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494601|ref|XP_004159594.1| PREDICTED: uncharacterized LOC101212666 [Cucumis sativus]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/545 (66%), Positives = 437/545 (80%), Gaps = 29/545 (5%)

Query: 1   MAS---EDGDAVLSDVEGE---IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSAT 54
           MAS   ED D VLSDVEG+   I +Q  S E+ +VERFRE+LAE +RERQ+REAAENS +
Sbjct: 1   MASGLDEDADVVLSDVEGDEHPITIQNPSPEEITVERFREILAERDRERQSREAAENSKS 60

Query: 55  ELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVK 114
           EL   FNRLKALAHE+IK+RDE  RQRDEALREKEE L+ N+K+S E+AE N  +DE +K
Sbjct: 61  ELQVSFNRLKALAHEAIKKRDECGRQRDEALREKEEALKLNEKVSAELAEANRQRDEALK 120

Query: 115 QLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174
             DEVTK       + DE+ K +D LRSEI N++HMLVTGI+KIS KVS+FKNF+AGGLP
Sbjct: 121 LRDEVTK-------EFDEILKDRDTLRSEIGNASHMLVTGIDKISAKVSSFKNFTAGGLP 173

Query: 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEA 234
           RSQKYTGLPAV YGVIKRTNEI+EELV QID T KSRN+ REQME RN+EIAIEVS+LEA
Sbjct: 174 RSQKYTGLPAVAYGVIKRTNEIIEELVRQIDTTTKSRNETREQMELRNYEIAIEVSQLEA 233

Query: 235 TISGLREEVAKKSSFIENLEKSLIEKDEKVAE-----------IESQGLELRQLVNEYED 283
           TISGL++EV+KK+S IE+LE ++IEKD+K+ E            E +  +LRQLV EY+D
Sbjct: 234 TISGLKDEVSKKTSVIEDLENTIIEKDKKICENEVDLVGKLRRAEDEASDLRQLVQEYDD 293

Query: 284 KLKNL----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDME 339
           KL++L    ES RPLLVDQL  +SKIHDQ+ DIIKIVD  ++D S  SESLFLP+ETDME
Sbjct: 294 KLRDLESKMESQRPLLVDQLGLISKIHDQIYDIIKIVDVSDVDHSEFSESLFLPRETDME 353

Query: 340 ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSAL 399
           EN+RASLAGMESIY L ++V++KTR+L+++K RE K+LNE V QL+KEKEHI  LLR+AL
Sbjct: 354 ENVRASLAGMESIYALAKLVMDKTRNLIEEKIRESKNLNETVAQLLKEKEHIGYLLRTAL 413

Query: 400 SKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYN 459
           SKRM+ DPSSK N+LF+VAENGLREAGIDFKFSKLL + K   + D   A++  EDEI+ 
Sbjct: 414 SKRMTSDPSSKANQLFEVAENGLREAGIDFKFSKLLGEEKFSTTRDNRKALDA-EDEIFT 472

Query: 460 LAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERI 519
           LAGALENIVKASQ+EI+ELRHS+EELRAES +LKE LE+Q+KEL  R  +I+ELEEKER+
Sbjct: 473 LAGALENIVKASQIEIIELRHSLEELRAESVVLKERLESQSKELKLRSLQIQELEEKERV 532

Query: 520 ANESV 524
           ANESV
Sbjct: 533 ANESV 537

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463814|ref|XP_004149626.1| PREDICTED: uncharacterized protein LOC101212666 [Cucumis sativus]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/545 (66%), Positives = 437/545 (80%), Gaps = 29/545 (5%)

Query: 1   MAS---EDGDAVLSDVEGE---IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSAT 54
           MAS   ED D VLSDVEG+   I +Q  S E+ +VERFRE+LAE +RERQ+REAAENS +
Sbjct: 1   MASGLDEDADVVLSDVEGDEHPITIQNPSPEEITVERFREILAERDRERQSREAAENSKS 60

Query: 55  ELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVK 114
           EL   FNRLKALAHE+IK+RDE  RQRDEALREKEE L+ N+K+S E+AE N  +DE +K
Sbjct: 61  ELQVSFNRLKALAHEAIKKRDECGRQRDEALREKEEALKLNEKVSAELAEANRQRDEALK 120

Query: 115 QLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174
             DE+TK       + DE+ K +D LRSEI N++HMLVTGI+KIS KVS+FKNF+AGGLP
Sbjct: 121 LRDEITK-------EFDEILKDRDTLRSEIGNASHMLVTGIDKISAKVSSFKNFTAGGLP 173

Query: 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEA 234
           RSQKYTGLPAV YGVIKRTNEI+EELV QID T KSRN+ REQME RN+EIAIEVS+LEA
Sbjct: 174 RSQKYTGLPAVAYGVIKRTNEIIEELVRQIDTTTKSRNETREQMELRNYEIAIEVSQLEA 233

Query: 235 TISGLREEVAKKSSFIENLEKSLIEKDEKVAE-----------IESQGLELRQLVNEYED 283
           TISGL++EV+KK+S IE+LE ++IEKD+K+ E            E +  +LRQLV EY+D
Sbjct: 234 TISGLKDEVSKKTSVIEDLENTIIEKDKKICENEVDLVGKLRRAEDEASDLRQLVQEYDD 293

Query: 284 KLKNL----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDME 339
           KL++L    ES RPLLVDQL  +SKIHDQ+ DIIKIVD  ++D S  SESLFLP+ETDME
Sbjct: 294 KLRDLESKMESQRPLLVDQLGLISKIHDQIYDIIKIVDVSDVDHSEFSESLFLPRETDME 353

Query: 340 ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSAL 399
           EN+RASLAGMESIY L ++V++KTR+L+++K RE K+LNE V QL+KEKEHI  LLR+AL
Sbjct: 354 ENVRASLAGMESIYALAKLVMDKTRNLIEEKIRESKNLNETVAQLLKEKEHIGYLLRTAL 413

Query: 400 SKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYN 459
           SKRM+ DPSSK N+LF+VAENGLREAGIDFKFSKLL + K   + D   A++  EDEI+ 
Sbjct: 414 SKRMTSDPSSKANQLFEVAENGLREAGIDFKFSKLLGEEKFSTTRDNRKALDA-EDEIFT 472

Query: 460 LAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERI 519
           LAGALENIVKASQ+EI+ELRHS+EELRAES +LKE LE+Q+KEL  R  +I+ELEEKER+
Sbjct: 473 LAGALENIVKASQIEIIELRHSLEELRAESVVLKERLESQSKELKLRSLQIQELEEKERV 532

Query: 520 ANESV 524
           ANESV
Sbjct: 533 ANESV 537

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817262|emb|CAN66327.1| hypothetical protein VITISV_030267 [Vitis vinifera]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/588 (63%), Positives = 435/588 (73%), Gaps = 86/588 (14%)

Query: 4   EDGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELS 57
           ED DAVLSDVEG+      I ++  S ED SVERFRE+LAE++RERQAREAAENS +EL 
Sbjct: 7   EDADAVLSDVEGDDPVPVPIVIKNPSQEDVSVERFRELLAEVDRERQAREAAENSKSELL 66

Query: 58  EKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD 117
             FNRLK+LAHE+IK+RDESTRQRDEAL            LS E+ E    KDEV+KQ D
Sbjct: 67  VAFNRLKSLAHEAIKKRDESTRQRDEAL------------LSGELXEAIKLKDEVLKQRD 114

Query: 118 EVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ 177
           E+ K       QLDE  KA++  RSEIE SA MLVTGIEKISGKVSNFKNF+AGGLPRSQ
Sbjct: 115 EIAK-------QLDEAVKAREASRSEIETSAQMLVTGIEKISGKVSNFKNFTAGGLPRSQ 167

Query: 178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237
           KYTGLPA+ YGVIKRTNEIVEELV Q+DAT KSRND REQME RN+EIAIEVS+LEATIS
Sbjct: 168 KYTGLPAIAYGVIKRTNEIVEELVRQMDATTKSRNDAREQMEHRNYEIAIEVSQLEATIS 227

Query: 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIE-----------SQGLELRQLVNEYEDKLK 286
           GLREEV+KK+S +EN+EKS+ EKD K++++E           ++  EL+Q+V+EY+ KL 
Sbjct: 228 GLREEVSKKTSVVENVEKSMAEKDAKISDMEREMSEKIQLAENEMSELKQIVSEYDLKLG 287

Query: 287 NLES----HRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENI 342
           NLES     R LL DQLN VSKIHD++ D+I+IVDD  LDQS +SESLFLPQ TDMEENI
Sbjct: 288 NLESIMESQRHLLFDQLNLVSKIHDRIYDVIRIVDDNKLDQSEVSESLFLPQATDMEENI 347

Query: 343 RASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKR 402
           RASLAGMESIY+LTRIV EK R+L++ +SRE K LNE V +LVKEKE I S LRSALS+R
Sbjct: 348 RASLAGMESIYELTRIVGEKIRNLMEDQSREAKXLNETVTRLVKEKEQIGSFLRSALSRR 407

Query: 403 MSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAG 462
           M++DPSSK  ELF+VAENGLREAGI+FKFS LL DGKV  S DKA  +ETEEDE+ N+ G
Sbjct: 408 MALDPSSKMKELFQVAENGLREAGIEFKFSNLLEDGKVMASHDKAGVLETEEDELXNMTG 467

Query: 463 ALENIVKASQLEIVELRHSVEE-------------------------------------- 484
           ALE+IVKASQLEI+EL+HSV+E                                      
Sbjct: 468 ALEHIVKASQLEIIELQHSVDELREKRKRRWLQLDLVRICWQFHGVPCQCYWTWIDQAFL 527

Query: 485 --------LRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESV 524
                   LRAESSLLKEH+EAQAKEL+HR +RIEELEEKER+ANESV
Sbjct: 528 CYMYCFAGLRAESSLLKEHMEAQAKELNHRQRRIEELEEKERVANESV 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548010|ref|XP_002515062.1| Paramyosin, putative [Ricinus communis] gi|223546113|gb|EEF47616.1| Paramyosin, putative [Ricinus communis]

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/546 (65%), Positives = 433/546 (79%), Gaps = 37/546 (6%)

Query: 1   MASEDGD---AVLSDVEGE----IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSA 53
           MAS  GD   AVLSDVEG+    I ++T S ED SVE++RE+LAEL+RER AREAAE S 
Sbjct: 1   MASGPGDENDAVLSDVEGDDPLPIVIRTPSLEDISVEKYRELLAELDRERIAREAAETSK 60

Query: 54  TELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVV 113
           +EL   FNRLKALAHE+IK+RDE  RQRDEALR+KEE L+  +++S E++++N  +DE+V
Sbjct: 61  SELQVSFNRLKALAHEAIKKRDECARQRDEALRDKEEALKEKERISVELSDLNKQRDEIV 120

Query: 114 KQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGL 173
           KQ DEV K               K+GL+SEIE+S HML++GIEKIS KVSNFKNFSA GL
Sbjct: 121 KQFDEVVKV--------------KEGLQSEIESSRHMLISGIEKISNKVSNFKNFSALGL 166

Query: 174 PRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELE 233
           PRS KY GL AV YGVIKRTNEIVEE++ QID T KSRN+ REQ+EQRN+EIAIEVS+LE
Sbjct: 167 PRSHKYNGLQAVAYGVIKRTNEIVEEMIKQIDVTTKSRNEAREQIEQRNYEIAIEVSQLE 226

Query: 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE-----------SQGLELRQLVNEYE 282
           A+ISGLR+E A+K S IENL+KSL EK+ KVAE+E            +GLE+++++ EY+
Sbjct: 227 ASISGLRDEAAEKCSVIENLQKSLAEKEGKVAEVERELLEKTHLVEKEGLEMKEVIREYD 286

Query: 283 DKLKNLES----HRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDM 338
           DKL++ ES     RPLLVDQL  V++IHD++ D+IKIVD  +LD S LSESLFLPQ+TDM
Sbjct: 287 DKLRDFESKIELQRPLLVDQLKLVAQIHDRLYDVIKIVDSNHLD-SELSESLFLPQQTDM 345

Query: 339 EENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSA 398
           EEN+RASLAGMESIY+L+RIV EKTRDL+++KS EVK LNE V +LVKEKEHI SLLRSA
Sbjct: 346 EENLRASLAGMESIYELSRIVGEKTRDLLEEKSHEVKVLNEMVARLVKEKEHIGSLLRSA 405

Query: 399 LSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIY 458
           LSKRM +D SSKT+ELF+ AENGL+EAGIDFKFSK++ D K+  S DK      EEDE+Y
Sbjct: 406 LSKRMKLDQSSKTSELFQAAENGLKEAGIDFKFSKVIGDNKISGSQDKGGTPYMEEDEVY 465

Query: 459 NLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKER 518
            LAGALENIVK SQLEI+EL+H+VEELRAE  LLKEH EAQ+KEL +RM RIEELEEKER
Sbjct: 466 TLAGALENIVKVSQLEIIELQHNVEELRAEVHLLKEHAEAQSKELGYRMHRIEELEEKER 525

Query: 519 IANESV 524
           +ANESV
Sbjct: 526 VANESV 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100127|ref|XP_002311753.1| predicted protein [Populus trichocarpa] gi|222851573|gb|EEE89120.1| predicted protein [Populus trichocarpa]

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/542 (67%), Positives = 438/542 (80%), Gaps = 46/542 (8%)

Query: 4   EDGDAVLSDVEGE----IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEK 59
           ED DAVLSDVEG+    I +++ S ED SVE+FRE+L   +RER AREAAE S +E+   
Sbjct: 7   EDADAVLSDVEGDEPVPIVMKSPSQEDISVEKFRELL---DRERAAREAAETSKSEIQVS 63

Query: 60  FNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEV 119
           FNRLKALAHE+IK+RDE +RQRDEA+REKEE L++N+KLS E+ +VN +K+E  K+ D+ 
Sbjct: 64  FNRLKALAHEAIKKRDECSRQRDEAMREKEEALKANEKLSNELIQVNRSKEETQKKFDD- 122

Query: 120 TKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKY 179
                               L+SE E S HMLV+GIEKISGK+SNFKNF+A GLPRSQKY
Sbjct: 123 --------------------LQSETEKSRHMLVSGIEKISGKLSNFKNFAAEGLPRSQKY 162

Query: 180 TGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL 239
           +GLPAV YGVIKRTNEIVEELV QID TAKSRND REQMEQRN+EIAIEVS+LEA ISGL
Sbjct: 163 SGLPAVAYGVIKRTNEIVEELVRQIDVTAKSRNDAREQMEQRNYEIAIEVSQLEAAISGL 222

Query: 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGL-----------ELRQLVNEYEDKLKNL 288
           R+EVAKK++ IE LEKS++EK+ KV+EIE + L           E+R LV EY+DKL+NL
Sbjct: 223 RDEVAKKTTLIEGLEKSVVEKEGKVSEIEREMLEKMHLVEKEASEMRDLVGEYDDKLRNL 282

Query: 289 ----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRA 344
               ESHRPLL DQLN V+KIHDQ+ D I+IV+  +L+ S +SESLFLPQ+TD+EENIRA
Sbjct: 283 ESKMESHRPLLFDQLNLVAKIHDQLYDAIEIVNTSHLN-SEVSESLFLPQQTDVEENIRA 341

Query: 345 SLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMS 404
           SLAGMESIY L+RIV EKTRDLV++++ EVK+LNE V +L+KEKEHI +LLRSALSKRM 
Sbjct: 342 SLAGMESIYDLSRIVAEKTRDLVEERNHEVKNLNETVDRLMKEKEHIGTLLRSALSKRMK 401

Query: 405 VDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGAL 464
           +DPSSKTNELF+VAENGLREAGIDFKFSK+L DG+  VS DK  ++E E DEIY LAGAL
Sbjct: 402 LDPSSKTNELFQVAENGLREAGIDFKFSKVLGDGE--VSGDKGGSLEAESDEIYTLAGAL 459

Query: 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESV 524
           ENIVKASQLEI+EL+HSVEELRAESSLLKEH+E QAKELSHR++RIEELEEKER+ANESV
Sbjct: 460 ENIVKASQLEIIELQHSVEELRAESSLLKEHIEIQAKELSHRLRRIEELEEKERVANESV 519

Query: 525 SY 526
           S 
Sbjct: 520 SC 521

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107739|ref|XP_002314584.1| predicted protein [Populus trichocarpa] gi|222863624|gb|EEF00755.1| predicted protein [Populus trichocarpa]

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/540 (66%), Positives = 436/540 (80%), Gaps = 46/540 (8%)

Query: 4   EDGDAVLSDVEGE----IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEK 59
           +D DAVLSDVEGE    I +++ S ED SVE+FRE+L   +RER AREAAE S +EL   
Sbjct: 7   DDADAVLSDVEGEDPVEIVIKSPSQEDISVEKFRELL---DRERAAREAAETSKSELQVS 63

Query: 60  FNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEV 119
           FNRLKALAHE++K+RDE +RQRDEALREKEE L++N+KLS E+ +VN +K+E+ K+ D+ 
Sbjct: 64  FNRLKALAHEALKKRDECSRQRDEALREKEEALKANEKLSNELIQVNGSKEEIEKKFDD- 122

Query: 120 TKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKY 179
                               L+S+IENS HMLV+GI+KISGK SNFKNF+A GLPRSQKY
Sbjct: 123 --------------------LQSQIENSRHMLVSGIDKISGKFSNFKNFAAAGLPRSQKY 162

Query: 180 TGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL 239
            GL AV +GVIKRTNEIVEELV QID TAKSRND REQ+EQRN+EIAIEVS+LEATISGL
Sbjct: 163 NGLQAVAFGVIKRTNEIVEELVRQIDVTAKSRNDAREQIEQRNYEIAIEVSQLEATISGL 222

Query: 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE-----------LRQLVNEYEDKLKNL 288
           R+EVAKK++ +E+LEKS++EK+ KV+EIE + LE           LR LV EY+DKL+NL
Sbjct: 223 RDEVAKKTTLVEDLEKSVVEKEGKVSEIEREMLERKHLVEKEASGLRDLVGEYDDKLRNL 282

Query: 289 ----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRA 344
               ESHR LL DQLN V+KIH+++ D+IKIVD  +LD S +SESLFLPQ+T++EENIRA
Sbjct: 283 ESKMESHRLLLFDQLNLVAKIHNRLYDVIKIVDSNHLD-SEVSESLFLPQQTEVEENIRA 341

Query: 345 SLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMS 404
           SLAGMESIY+++RIV EKTRDLV++K+ E K+LNE VG LVKEKEHI SLLRSALSKR+ 
Sbjct: 342 SLAGMESIYEVSRIVAEKTRDLVEEKNHEEKNLNETVGILVKEKEHIGSLLRSALSKRIE 401

Query: 405 VDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGAL 464
           + PSSKT+ELF+VAENGLREAGIDFKFSK++ DGK  VS DK    +TE DEIY LAGAL
Sbjct: 402 LHPSSKTSELFQVAENGLREAGIDFKFSKVVGDGK--VSYDKGGLPDTESDEIYTLAGAL 459

Query: 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESV 524
           ENIVKASQLEI+EL+HSVEELRAESSLL+E +E QAKELS+RM+R+EELEEKER+ANESV
Sbjct: 460 ENIVKASQLEIIELQHSVEELRAESSLLQEDVEVQAKELSNRMRRVEELEEKERVANESV 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525423|ref|XP_003531324.1| PREDICTED: uncharacterized protein At3g49055-like [Glycine max]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 327/541 (60%), Positives = 415/541 (76%), Gaps = 55/541 (10%)

Query: 5   DGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSE 58
           D DAVLSDVE +      ++ +  S ED SVE+ R+VLAEL+RERQAR AAEN+ +EL  
Sbjct: 8   DADAVLSDVEDDGGDPIPLETKAPSPEDVSVEKLRDVLAELDRERQARIAAENTKSELQV 67

Query: 59  KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDE 118
            FNRLKALAHE+IK+RDE  RQRD+A+REKEE  +                         
Sbjct: 68  SFNRLKALAHEAIKKRDEFGRQRDDAVREKEETAK------------------------- 102

Query: 119 VTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQK 178
                     QL+E  K +D LRSEI NS+HMLVTG+EKIS KVS+F   +A  LPRSQK
Sbjct: 103 ----------QLEETAKERDALRSEIGNSSHMLVTGMEKISAKVSSFAG-NALPLPRSQK 151

Query: 179 YTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISG 238
           YTG+ AV YGVIKR NEIVEEL+ Q +ATAK+RN+ REQMEQRN+EIAIEVS+LEATISG
Sbjct: 152 YTGMAAVAYGVIKRANEIVEELLKQNEATAKARNEAREQMEQRNYEIAIEVSQLEATISG 211

Query: 239 LREEVAKKSSFIENLEKSLIEKDEKVAEI-------ESQGLELRQLVNEYEDKLKNL--- 288
           LR++VAK +S +E+LE+ L  +D+++ E+       +S+ L+L++ V E E+KL NL   
Sbjct: 212 LRDDVAKNASIVEDLERDLAVRDQRLNEVSENLSKEQSEALQLKEFVAECEEKLSNLESR 271

Query: 289 -ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLA 347
            ES RPLL+DQL++VSKIH+Q+ +++KI+DDG    S LSESLF+PQETD+EENIRASLA
Sbjct: 272 MESQRPLLIDQLSFVSKIHNQICNVVKILDDGGT--SELSESLFVPQETDVEENIRASLA 329

Query: 348 GMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDP 407
           GMESIY+LT+IVV+K +D++++K RE+KSL+E V QLV+EK+ I SLLRSALSKRM+VDP
Sbjct: 330 GMESIYELTKIVVQKAKDVLEEKDREIKSLDETVAQLVREKDQIGSLLRSALSKRMAVDP 389

Query: 408 SSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI 467
           SS+ +ELF+ AENGLREAGIDFKFSKLL DGKV  S+DK++  E +EDEIY+LAGALE++
Sbjct: 390 SSRKSELFQAAENGLREAGIDFKFSKLLGDGKVAASNDKSDTTEKQEDEIYSLAGALEDV 449

Query: 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVSYM 527
           V+ASQLEI+EL+H+V ELRAE SLLK+H+EAQ KEL HRM RIEELEEKER+ANE++  +
Sbjct: 450 VRASQLEIIELKHTVGELRAELSLLKQHIEAQVKELDHRMHRIEELEEKERVANENIEGL 509

Query: 528 F 528
            
Sbjct: 510 M 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512652|ref|XP_003525032.1| PREDICTED: uncharacterized protein At3g49055-like [Glycine max]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 320/537 (59%), Positives = 411/537 (76%), Gaps = 55/537 (10%)

Query: 5   DGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSE 58
           D +AVLSDVE +         +  S ED SVE+FRE LAEL+RERQAR AAEN+ +EL  
Sbjct: 8   DANAVLSDVEDDGGDPFPTATKLPSPEDVSVEKFREALAELDRERQARVAAENTKSELQV 67

Query: 59  KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDE 118
            FNRLKALAHE+IK+RDE  RQRD+A+REKEE                            
Sbjct: 68  SFNRLKALAHEAIKKRDEFGRQRDDAIREKEE---------------------------- 99

Query: 119 VTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQK 178
                  + +QL+E  K +D LRSEI NS+HM+VTG+EKIS KVS+F   +A  LPRSQK
Sbjct: 100 -------TATQLEETAKERDALRSEIGNSSHMMVTGMEKISAKVSSFSG-NALPLPRSQK 151

Query: 179 YTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISG 238
           YTG+ AV YGVIKR NEIVEEL+ Q +AT K+RN+ REQMEQRN+EIAIEVS+LEATISG
Sbjct: 152 YTGMAAVAYGVIKRANEIVEELLKQNEATTKARNEAREQMEQRNYEIAIEVSQLEATISG 211

Query: 239 LREEVAKKSSFIENLEKSLIEKDEKVAEI-------ESQGLELRQLVNEYEDKLKNL--- 288
           LR+EVAKK   +E+LE+ L  +D+++ E+       +S+ L+L++ V E E+KL  L   
Sbjct: 212 LRDEVAKKVLTVEDLERDLAVRDQRLNEVSENLSKEQSEALQLKEFVGECEEKLSKLESR 271

Query: 289 -ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLA 347
            ES RPLL+DQL++VSKIH+Q+ ++++I+D G+ ++  LSESLF+PQETD+EENIRASLA
Sbjct: 272 MESQRPLLIDQLSFVSKIHNQICNVVRIIDHGSTEE--LSESLFVPQETDVEENIRASLA 329

Query: 348 GMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDP 407
           GMESIY+LT+IVV+K +D++++K RE+KSL+E + +LV+EK+ I S LRSALSKR++VDP
Sbjct: 330 GMESIYELTKIVVQKAKDVLEEKDREIKSLHETLARLVREKDQIGSFLRSALSKRVAVDP 389

Query: 408 SSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI 467
           SS+ +ELF+ AENGLREAGIDFKFSKLL DGKV  S+DK++  E EEDEIY+LAGALE++
Sbjct: 390 SSRKSELFQAAENGLREAGIDFKFSKLLGDGKVAASNDKSDTTEKEEDEIYSLAGALEDV 449

Query: 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESV 524
           VKASQLEI+EL+H+V ELRAE SLLK+H+EAQAKEL HRM R+EELEEKER+ANE++
Sbjct: 450 VKASQLEIIELKHTVGELRAELSLLKQHVEAQAKELDHRMHRVEELEEKERVANENI 506

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
TAIR|locus:2024081	678	AT1G24560 "AT1G24560" [Arabido	0.902	0.710	0.521	1.1e-119
TAIR|locus:2152985	1586	CIP1 "COP1-interactive protein	0.833	0.280	0.230	1.4e-14
TAIR|locus:2156922	788	ATGRIP [Arabidopsis thaliana (	0.897	0.607	0.227	1.8e-14
WB|WBGene00011696	1205	eea-1 [Caenorhabditis elegans	0.882	0.390	0.228	3.8e-11
WB|WBGene00010306	1133	F59A2.6 [Caenorhabditis elegan	0.917	0.432	0.227	9.6e-11
UNIPROTKB|F1MLU7	1302	KTN1 "Uncharacterized protein"	0.848	0.347	0.220	1.1e-10
DICTYBASE|DDB_G0290503	1492	DDB_G0290503 [Dictyostelium di	0.865	0.309	0.201	2.9e-10
UNIPROTKB|E2R200	2684	CENPE "Uncharacterized protein	0.863	0.171	0.213	4.4e-10
UNIPROTKB|F1LMV6	2877	Dsp "Protein Dsp" [Rattus norv	0.833	0.154	0.212	6.6e-10
UNIPROTKB|E2RNG4	2878	DSP "Uncharacterized protein"	0.898	0.166	0.213	9e-10

TAIR|locus:2024081 AT1G24560 "AT1G24560" [Arabidopsis thaliana (taxid:3702)]

 Score = 1178 (419.7 bits), Expect = 1.1e-119, P = 1.1e-119
 Identities = 262/502 (52%), Positives = 345/502 (68%)

Query:    41 RERQAREAAENSATELSEKFNRLKAL--AHESIKRRDESTRQRDEALREKEEILRSNDKL 98
             ++    EA++   TEL  + +R K    A ES K   + +  R +AL    E ++  D+ 
Sbjct:    25 KDSPREEASDERITELIAELDREKKAREAAESSKSELQVSFNRLKALAV--EAIKKRDES 82

Query:    99 STEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKI 158
               E  E    K+ +  +L+ V K +D    +LDE  +++DGL++EIENS+HMLV+GIEKI
Sbjct:    83 KRERDEALKEKENLTNELENVNKGKDEMSKKLDEALRSRDGLKAEIENSSHMLVSGIEKI 142

Query:   159 SGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQM 218
             SGKVS+FKNFS GGLP+SQKYTGL +V YGVIKRTNEIVEELV QID TAKSRN+ REQM
Sbjct:   143 SGKVSSFKNFSNGGLPKSQKYTGLTSVAYGVIKRTNEIVEELVRQIDTTAKSRNEAREQM 202

Query:   219 EQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE----- 273
             +QRN+EIAIEVS+LE+ IS LR EVA+K+S +++LE+ + EK++++AE+E   LE     
Sbjct:   203 DQRNYEIAIEVSQLESAISNLRLEVAEKASIVDDLERGVSEKEKRIAELEKGNLEKVSLL 262

Query:   274 ------LRQLVNEYEDKLKNLE----SHRPLLVDQLNYVSXXXXXXXXXXXXXXXGNLDQ 323
                   L+QLV+EY+ KLK +E    + RPLL+DQLN VS                + +Q
Sbjct:   263 EGEVVELKQLVDEYDGKLKTMELKMVAQRPLLMDQLNLVSRIHDQLYEVVRIVDGNSSEQ 322

Query:   324 SGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQ 383
             S LSES F+PQET+MEENIRASLAGMESI++LT++V  K + LV++KS E+K+LNE VG 
Sbjct:   323 SDLSESFFMPQETEMEENIRASLAGMESIFELTKVVSGKAQSLVEEKSHELKNLNETVGL 382

Query:   384 LVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVS 443
             LVKEKEHI +LLRSALSKR+  +  S+  ELF+ AENGLR+ G D KF+KLL DGKV  S
Sbjct:   383 LVKEKEHIGTLLRSALSKRVIGEQPSQKRELFQAAENGLRDGGTDSKFAKLLKDGKVQDS 442

Query:   444 -DDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKE 502
               D  +    E++EIY+LA  LENIVKASQLEIVEL+H +E  R E+S L++ L+ Q KE
Sbjct:   443 RSDNTHDHSKEDNEIYSLASTLENIVKASQLEIVELQHLLEASREETSSLRKQLDTQTKE 502

Query:   503 LSHRMXXXXXXXXXXXXANESV 524
             L+ RM            ANE+V
Sbjct:   503 LNQRMRQIEELKEKERIANENV 524

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 112/485 (23%), Positives = 220/485 (45%)

Query:    38 ELNRE-RQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEE---ILR 93
             EL+   + A E +   +T++SE  + L+      ++     + +  E L EKE    +L 
Sbjct:   960 ELSESLKAAEEESRTMSTKISETSDELER-TQIMVQELTADSSKLKEQLAEKESKLFLLT 1018

Query:    94 SND-KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV 152
               D K   +I E+      +  +L+ V +AR      L+    +K  +  ++E     +V
Sbjct:  1019 EKDSKSQVQIKELEATVATLELELESV-RARI---IDLETEIASKTTVVEQLEAQNREMV 1074

Query:   153 TGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRN 212
               I ++  K    +      L  +QK           I+     ++ L  ++D+ +  + 
Sbjct:  1075 ARISELE-KTMEERGTELSAL--TQKLEDNDKQSSSSIETLTAEIDGLRAELDSMSVQKE 1131

Query:   213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGL 272
             +V +QM  ++ E ++++  L+  ++GLR++VA   S    LE  L +K E+++E      
Sbjct:  1132 EVEKQMVCKSEEASVKIKRLDDEVNGLRQQVASLDSQRAELEIQLEKKSEEISEY----- 1186

Query:   273 ELRQLVNEYEDKLKNLESHRPLLVDQLNYVSXXXXXXXXXXXXXXXGNLDQSGLSESLFL 332
              L Q+ N  E+ +  ++ H  +L +++N +S               G   +S L E L  
Sbjct:  1187 -LSQITNLKEEIINKVKVHESIL-EEINGLSEKIKGRELELETL--GK-QRSELDEELRT 1241

Query:   333 PQETDMEENIRASLAGMESIYQLTRIV--VEKTRDLVQKKSREVKSLNEAVGQLVKEKEH 390
              +E +++ + + ++A  E I  LT ++  ++   D +Q +  E ++  E   Q   E  +
Sbjct:  1242 KKEENVQMHDKINVASSE-IMALTELINNLKNELDSLQVQKSETEAELEREKQEKSELSN 1300

Query:   391 IVSLLRSALSKRMSV-----DPSSKTNELFKVAENGLREAGIDFKFS-KLLSD-GKVPVS 443
              ++ ++ AL ++ +      +   + NELFK  E  L +  +D+K + +LL + GK   S
Sbjct:  1301 QITDVQKALVEQEAAYNTLEEEHKQINELFKETEATLNKVTVDYKEAQRLLEERGKEVTS 1360

Query:   444 DDKA-----NAMETEEDEIYNLAGALENIV-KASQLEIVELRHSVEELRAESSLLKEHLE 497
              D         ME+  +E+      +E ++ K S +E V+LR S ++LR    +L E  E
Sbjct:  1361 RDSTIGVHEETMESLRNELEMKGDEIETLMEKISNIE-VKLRLSNQKLRVTEQVLTEKEE 1419

Query:   498 AQAKE 502
             A  KE
Sbjct:  1420 AFRKE 1424

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

TAIR|locus:2156922 ATGRIP [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 118/518 (22%), Positives = 216/518 (41%)

Query:    16 EIDVQTSS-DEDFSVERFREVLAE--LNRERQAREAAENSATELSEKFNRLKALAHESIK 72
             ++  Q +S   +  VE+   V AE  L   R+A   A+  + E S KF++++    + IK
Sbjct:    86 QLQEQVASLSREIDVEKQTRVAAEQALEHLREAYSEADAKSQEYSSKFSQVEQKLDQEIK 145

Query:    73 RRDES--------TRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARD 124
              RDE         TR    A +  +EI +  D L     EVN   +    Q   + +  +
Sbjct:   146 ERDEKYADLDAKFTRLHKRAKQRIQEIQKEKDDLDARFREVNETAERASSQHSSMQQELE 205

Query:   125 GSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISG----KVSNFKNFSAGGLPRSQKYT 180
              +R Q +E  KA D  R ++ ++ + L   IE++ G    K +  +      L + Q   
Sbjct:   206 RTRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQSLLDKDQILE 265

Query:   181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLR 240
              L   +  V +R    V EL      +AK + ++ E +E +  +   E  +   TIS L+
Sbjct:   266 DLKKQLQAVEERKQIAVTEL------SAKHQKNL-EGLEAQVVDALSERDKAAETISSLQ 318

Query:   241 EEVAKKSSFIENLEKSLIEKDEKV-AEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL 299
               +A+K S I  +E +   +  ++ A  E+   EL  L +E E + +  E+    L  +L
Sbjct:   319 VLLAEKESKIAEMEAAATGEAARLRAAAETLKGELAHLKSENEKEKETWEASCDALKSKL 378

Query:   300 NYVSXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQETDME---ENIRASLAGMESIYQLT 356
                                    +  +   +   ++ +++   E I   L    S Y++ 
Sbjct:   379 EIAESNYLQAEIEVAKMRSQLGSEMSMQTQILSTKDAELKGAREEINR-LQSEFSSYKIR 437

Query:   357 RIVVEKTRDL---VQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNE 413
                + + +D+     K S ++KSL EA+ +  KE  ++VS  R    + +    +S   E
Sbjct:   438 AHALLQKKDMELAAAKDSEQIKSLEEALKEAEKEV-YLVSAERDRAQQDLQSALASLEKE 496

Query:   414 LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETE----EDEIYNLAGALENIVK 469
             L + A   L++A    K  ++  D  V  +  +  A E +    E+       AL    +
Sbjct:   497 LEERA-GALKDASEQIKSLEVKLDSTVARNQAEKQAWEEDLRVLEETWRRRCEALTAQNE 555

Query:   470 ASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRM 507
             AS  E +E    +E  +  +  +KE  E+  +EL+ R+
Sbjct:   556 ASPAEGIE--KELENAKLRNKRMKEEHES-VRELADRL 590

GO:0005737 "cytoplasm" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0048193 "Golgi vesicle transport" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

WB|WBGene00011696 eea-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 190 (71.9 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 119/521 (22%), Positives = 225/521 (43%)

Query:    23 SDEDFSVERFREVLAELNRE--RQAREAAENS--ATELSEKFNRLKALAH---ESIKRRD 75
             S+ D S+   +E LAE  ++  +   E  E++     L+ + N+L+  +    E I   +
Sbjct:   446 SERDSSINDLKEKLAESEKKATKYKNELKEHADLVENLTLQLNKLQENSKDLMEKISAGE 505

Query:    76 ESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKA-RDGSRSQLDEVT 134
                +   E L E+E++  +N+ L T   +   A  E+  ++ E+ K  RD   S+ D+  
Sbjct:   506 GGAKMAIEQL-EQEKVKLTNE-LQTSSEKTKKASGELEAKISELEKKLRDAEASRTDKEQ 563

Query:   135 KAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLP-----AVVYG- 188
             K K     E E+    L    ++I  K   F           QK T        A+V   
Sbjct:   564 KWKQ----EKESFERKLAEAEDEIKRKGERFVEMEKEMEEERQKATDRTLKLKDALVNSE 619

Query:   189 ----VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVA 244
                  IK+ +E  E++V + DA  +      E   Q+  E      ELEA++S     V+
Sbjct:   620 KNLETIKKESEDREKIVREKDAHLEENKKRIEDAVQKLEEAEKRARELEASVSSRDTTVS 679

Query:   245 KKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSX 304
              K S +  L+  L E +  + E++ Q   + ++ NE  +K + +E+    + D+  +   
Sbjct:   680 TKESELSELKGKLTESNSFIEELKVQ---VEKVSNEISEKQQEVENLMAEMRDKEAHWKT 736

Query:   305 XXXXXXXXXXXXXXGNLDQSG----LSESLFLPQETDMEENIRASLAGMESIYQLTRIVV 360
                            N + S     + E L   +ET  EE  +  L  ++S  +  +  V
Sbjct:   737 KRDEFEAQMLRNQEDNEEASSTLKSVQEQLMKEKETSGEE--KNQLISVKSQLEELKTEV 794

Query:   361 EKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSL---LRSAL----SKRMSVDPSSKTNE 413
             E+     ++K++E++ L  AV    +E++ + +    LR+      SK  S++ S +  E
Sbjct:   795 ERLIRSEEEKTQEIEKLKSAVTATTQERDELTATSESLRTECENLNSKIQSIEESRRHAE 854

Query:   414 LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVK---A 470
               K +EN  R      +  K + + +  +   +  A+ET+++EI +L    + +V+    
Sbjct:   855 E-KGSENLERMITEKSRLEKDIEERESTIQSIQ-EALETKDNEIESLK-TTQRVVEDELV 911

Query:   471 SQLEIVELRHS-VEELRAESSLLK---EHLEAQAKELSHRM 507
             S++  +E  +S +EE   E +  K   E LEA+  E + ++
Sbjct:   912 SKISHIESFNSRIEEFEKEMASGKRTIERLEAEKAEETEKL 952

GO:0046872 "metal ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISS;IMP

WB|WBGene00010306 F59A2.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 186 (70.5 bits), Expect = 9.6e-11, P = 9.6e-11
 Identities = 125/550 (22%), Positives = 238/550 (43%)

Query:     2 ASEDGDAVLSDVEGEI-DVQTSSDEDFSVERFREVLAELNRERQAREAAENSATE-LSEK 59
             +S+  D +  ++E E+ + Q  S E+       E   E+ R   A     NS TE L +K
Sbjct:   419 SSQKADKI-QELEKELQNAQKRSSEEL------ETANEMVRSLTATLENSNSETEILKQK 471

Query:    60 FNRL-KALA--HESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQL 116
                L K L    ++ K   E       +L EKE+       L T+I ++ + K+E V   
Sbjct:   472 LETLDKELQARQQTEKALTEEINVLTTSLAEKEQQTAQIQNLQTQIYQMEVEKEEKV--- 528

Query:   117 DEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRS 176
              E+ K +    +Q    + A++ LR+EIE     L   +E+   +  N        L   
Sbjct:   529 -ELVKVQLQQAAQSS--SSAEEALRAEIEQLEAKL-KAVEQAKAEALN-------SLLAE 577

Query:   177 QKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI 236
             +++        GV K   E +E +  Q+   A+S + V + +     ++  ++ E+E   
Sbjct:   578 KEHLQAQLHQLGVEKE--EKLEMVKVQLQQAAQSSSSVEQALRAEIEKLEAKLQEIEEEK 635

Query:   237 -SGLREEVAKK---SSFIENLEKSL----IEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288
              + L   +A+K   ++ I+ L+  L    +EK+EK+  ++ Q  +  Q  +  E  L+  
Sbjct:   636 KNALNASLAEKEQQTAQIQELQAQLHQLEVEKEEKLEMVKVQLQQAAQSSSSVEQALR-A 694

Query:   289 ESHRPLLVDQLNYVSXXXXXXXXXXXXXXXGNLDQSGLSESL---FLPQETDMEENIRAS 345
             E  +  L  +L  +                   + S L+E +   F+ +E  + + +R+ 
Sbjct:   695 EIEK--LEAKLQEIEKAKMQNSSKREQKVR---ELSNLNEKMRVEFIAKEKIISD-LRSE 748

Query:   346 LAGMESIYQLTRIVVEKTR-DLVQKKSREVKSLNEAVGQLVKE---KEHIVSLLRSALSK 401
             L+ + +   + +  VEKT+ D  + ++RE ++  +   + ++E   +E     L + +  
Sbjct:   749 LSTISTELVVQKATVEKTKMDFGELETREKRATADRENEKMEEIRLRETFAKELET-MGS 807

Query:   402 RMSVDPSSKTNELFKVAENGLREAGIDFKFS-KLLSDGKVPVSDDKANAMETEED----E 456
              + V  ++  NEL   AE  + +    F+   K   + +   S+ +   +E   +    E
Sbjct:   808 ALEVKETAY-NELKASAEKKIAKLTSQFEEKLKKAQNSQDEASESRFKTLEASAEQAKLE 866

Query:   457 IYNLAGALENIVKASQLEIVELRH---SVEELRAESSLLKEHLEAQAKELSHRMXXXXXX 513
                   ALE ++K+S+ EI EL+    S E+ R+   + KE LE +AKEL+ R+      
Sbjct:   867 SEQKLRALEELLKSSESEIEELKIKEISAEKDRSHWEVEKEMLEGEAKELTDRIEGLEAE 926

Query:   514 XXXXXXANES 523
                   ANE+
Sbjct:   927 VKKLTAANET 936

GO:0000042 "protein targeting to Golgi" evidence=IEA

UNIPROTKB|F1MLU7 KTN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 110/498 (22%), Positives = 213/498 (42%)

Query:    34 EVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILR 93
             E L    ++  ++ AA+ SA+ L+E+ +++ A   + IK+ ++S     + L  KEE L+
Sbjct:   579 EALKAQIQQFHSQIAAQTSASALAEELHKVIAEKDKQIKQTEDSLANEHDHLASKEEELK 638

Query:    94 S----NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAH 149
                  N  L  E+ ++    +E      E+ K +     + D++   ++ L+ EI N   
Sbjct:   639 DIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQKSIHVKDDKIRLLEEQLQCEISNK-- 696

Query:   150 MLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNE---IVEELV--GQI 204
             M    I     K    +      L   Q    +   +   I+  +E    VEEL+  G I
Sbjct:   697 MEEFKILSDQNKALQLEVQKLQTLVSEQPNKDVLEQMERCIQEKDEKLKTVEELLETGLI 756

Query:   205 DATAKSR--NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDE 262
                 K    N +R +    N  +A EV +L+A     + +    +S +E L+K + EKD 
Sbjct:   757 QVATKEEELNAIRTE----NSSLAKEVQDLKAK----QNDQVSFASLVEELKKVIHEKDG 808

Query:   263 KVAEIESQ-GLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSXXXXXXXXXXXXXXX--- 318
             K+  +E     EL ++ N+ E  +++L+     L +++  +                   
Sbjct:   809 KIKSVEELLEAELLKVANK-EKTIQDLKQEIEALKEEIGNIQLEKAQQLSITSQVQELQN 867

Query:   319 ---GNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVK 375
                G  +Q    +++   +E D+    R     ++ + +    +    ++  Q K +E  
Sbjct:   868 LLKGKEEQMNNMKTVLEEKEKDLHNRGRR----LQDLQEENESLKTHVQEFAQHKFQEAC 923

Query:   376 SLN--EAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVA-ENGLREAGID-FKF 431
             S +  E +  ++KEKE+ +  L + L +R S D SSKT  L +V  EN L ++ I+  K 
Sbjct:   924 SASQFEELQIVLKEKENEMKRLETMLKERES-DLSSKTKLLQEVQDENKLFKSQIEELKQ 982

Query:   432 SKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI---VKASQLEIVELRH----SVEE 484
                      P  ++    +   E EI +L   L+++   V+  + +  +LR     ++E 
Sbjct:   983 QNYQQASSFPPHEELLKVISEREKEITDLKNELDSLKDAVEHQRKKNNDLREKNWEAMEA 1042

Query:   485 LRAESSLLKEHLEAQAKE 502
             L +   LL++ +   +KE
Sbjct:  1043 LASTEKLLQDKVNKTSKE 1060

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]

 Score = 183 (69.5 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 99/492 (20%), Positives = 216/492 (43%)

Query:     7 DAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRE-RQAREAAENSATELSEKFNRLKA 65
             D+++ + + ++   T S++D S++  +  L E   E  +  E  ++S+ EL  K N  + 
Sbjct:   810 DSIIIENQEKLVQLTKSNQD-SLDELQSKLNEKQNEINELIENNQSSSNELQSKLNEKQN 868

Query:    66 LAHESIKRRDESTRQRDEALREK-EEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARD 124
               +  I+    S+ +    L EK +EI     KL+ +  ++N    E+V+  +  +    
Sbjct:   869 EINLLIENNQSSSDELQSKLNEKHQEINELQSKLNEKQNKIN----ELVENNESSSDELQ 924

Query:   125 GSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPA 184
                 QL +  + K+      E+S       + ++  K++  +N     +  + + + L  
Sbjct:   925 SKLIQLSDQLQEKENQLKSFESSIIERDEKLNQLQSKLNEKQN-EIDQITENNQ-SSLDE 982

Query:   185 VVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVA 244
             +   + ++ NEI + +     +  + ++ + E++ + N E   +++EL  T   L ++  
Sbjct:   983 LQSNLNEKQNEINQLIENNQSSLDELQSKLNEKLNEIN-EKDNKINELIQTNESLSKD-- 1039

Query:   245 KKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE----SHRPLLVDQLN 300
             ++S F ENLE+ L EK+ K+ ++ SQ +++    +E E++L  L+         + +Q N
Sbjct:  1040 QQSKF-ENLEQELEEKNNKILDLNSQIIDVNHQFSEKENELNQLQLKLIEKDQEIENQNN 1098

Query:   301 YVSXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVV 360
              +                 N + +   E++ L +E      ++  L  +E+   L +  V
Sbjct:  1099 KIIDINNQLNEKEKEININNDNDNNNEENIQLIEE------LKEKLQDLENELNLEKDTV 1152

Query:   361 EKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSK-RMSVDPSSKTNELFKVAE 419
              +  D + +   E+K ++E + +  +E   +++    +L++     D     NE    A 
Sbjct:  1153 NEKNDDINELKEEIKLISEKLSEKEQELNEMINDYDESLNEINDQKDLVKSLNERLTNAH 1212

Query:   420 NGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELR 479
               + E   D +   L  +G   +   + N +  +  E  NL      I+  S LE+ +LR
Sbjct:  1213 LKINEK--DNEIHSLSKEGFNEIQS-QLNLITNQLSEKDNLLIEKSQII--SDLEL-QLR 1266

Query:   480 HSVEELRAESSL 491
              S +E  + SSL
Sbjct:  1267 ESYKERSSSSSL 1278

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E2R200 CENPE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 184 (69.8 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 105/491 (21%), Positives = 213/491 (43%)

Query:    28 SVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALRE 87
             +V   +E + E+   +   EA +++   +  +  RL    HE+++     T++RD+ LR 
Sbjct:  1622 TVSETQEKICEMEHLKNQFEAQKSTLENIEMENARLTQRLHENLEEMRSVTKERDD-LRS 1680

Query:    88 KEEILR-SNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIEN 146
              EE L+   D+L   + E  + +D + KQ +E+  AR   +   + + K + GL SE  +
Sbjct:  1681 IEETLKVERDQLKENLRET-VIRD-LEKQ-EELRIARMHVKEHQETIDKLR-GLVSEKTD 1736

Query:   147 SAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDA 206
                 +   +E  +  +          L + ++      +V   +K   E +++L G +  
Sbjct:  1737 ELSNMQIDLENTNDALKT------QDLEKQEELR----IVCMHVKEHQETIDKLRGLVSE 1786

Query:   207 TAKSRNDVREQMEQRNFEIAIEVSELEAT---ISGLREEVA---KKSSFIENLEKSLIEK 260
                   +++  +E  N ++  ++ +L+A    +  L+E+V+   KK+S IE L+K L  +
Sbjct:  1787 KTDEIANMQMDLENSNAKLQEKIQQLKANEHQLFKLKEDVSETQKKTSEIERLKKQLKGQ 1846

Query:   261 DEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLV---DQLNY-VSXXXXXXXXXXXXX 316
                + +IE + L L Q ++E  +++K++   R  L    DQL   +              
Sbjct:  1847 SLTLDKIEMENLNLAQKLHENLEEMKSVMQERDNLKLERDQLKTNLQETIARDLETQQEL 1906

Query:   317 XXGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKS 376
                 L      E++   +E   E+  + S   ++     ++  ++K  + +QKK  ++  
Sbjct:  1907 KIALLHLKEHQETIDKFRERVSEKTTQIS--NIQKDLNKSKDELQKKIEELQKKELQLLK 1964

Query:   377 LNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTN-ELFKVAENGLREAGIDFKFSKLL 435
             + E V +  K    +  L +   ++ +S+      N +L K     L E  I  K    L
Sbjct:  1965 MKEDVNKTHKNINKMEQLKQQFEAQNLSMQSVEMDNLDLTKKLHKCLEEKRIIAKERDEL 2024

Query:   436 SDGKVPVSDDKANAMETEEDEIYNLAGALENIVK-ASQLEIVELRHSVEELRAESSLLKE 494
                K  +  ++    ET  + I +     + IVK   +L+  E  H  E LR + S +KE
Sbjct:  2025 RRIKESLKMERDQFRETLTEMIASDQQNQKEIVKYEKRLQCNEKHHLTESLREKCSRIKE 2084

Query:   495 HLEAQAKELSH 505
              L+  ++  +H
Sbjct:  2085 LLKRYSEMYNH 2095

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1LMV6 Dsp "Protein Dsp" [Rattus norvegicus (taxid:10116)]

 Score = 192 (72.6 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
 Identities = 101/476 (21%), Positives = 200/476 (42%)

Query:    41 RERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALRE-KEEILRSNDKLS 99
             R +Q+ E A  +  + +++  RLKA   E  KRR E   +  +      EEI+   +K  
Sbjct:  1315 RHKQSLEEAAKTIQDKNKEIERLKAEYQEEAKRRWEYENELSKVRNSYDEEIISLRNKFE 1374

Query:   100 TEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKIS 159
             TEI   NI K  + +   +  +   G R+Q+D +T+    L  E++   + L    E + 
Sbjct:  1375 TEI---NITKTTIHQLTMQKEEDTSGYRAQIDNLTRENRSLSEEVKRLKNTLAQTTENLR 1431

Query:   160 GKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQME 219
                 N +   A G   SQ+   L   +  V +   E        +D  AK+  D  +++E
Sbjct:  1432 RVEENVQQQKASGSEMSQRKQQLEIELRQVSQMRTEESMRYKQSLDDAAKTIQDKNKEIE 1491

Query:   220 QRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVN 279
             +    +  E +E +     L +E +K      +L+K+     E +++++ Q  EL +L  
Sbjct:  1492 RLKQLVDKETNERKC----LEDENSKLQRVQYDLQKANNSATEAMSKLKVQEQELTRLRI 1547

Query:   280 EYEDKLKNLESHRPLLVDQLNYV--SXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQETD 337
             +YE     +   R +    +  +  S                 L ++   ES    +   
Sbjct:  1548 DYE----RVSQERTVKDQDITRIQSSLKDLQLQKQKAEEELSRLKRTASDES---SKRKM 1600

Query:   338 MEENIRASLAGM-ESIYQLTRIVVE-KTRDLVQKKSRE-VKSLNEAVGQLVKEKEHIVSL 394
             +EE + A    + E   ++T +  + +   +V+K+S + ++   + +   V+EK+     
Sbjct:  1601 LEEELEAMRRSLKEQAVKITNLTQQLEQASIVKKRSEDDLRQQRDVLDGHVREKQRTQEE 1660

Query:   395 LRSALSKRMSVDPSSKTNELFKVAENGLREAGI-DFKFSKLLSDGKVPVSDDKANAMETE 453
             LR     R+S+D  +   +L +  EN +++A + +  F K + D    +++ K   +E  
Sbjct:  1661 LR-----RLSLDVEALRRQLVQEQEN-VKQAHLRNEHFQKAIEDKSRSLNESKIE-IERL 1713

Query:   454 EDEIYNLAGA---LENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHR 506
             +    NL      LE  ++  +LE  +LR    E   + +     L +Q +  ++R
Sbjct:  1714 QSLTENLTKEHLMLEEELRNLRLEYDDLRRGRSEADNDKNSTISELRSQLQISNNR 1769

GO:0001533 "cornified envelope" evidence=IEA

GO:0002934 "desmosome organization" evidence=IEA

GO:0003223 "ventricular compact myocardium morphogenesis" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005882 "intermediate filament" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0018149 "peptide cross-linking" evidence=IEA

GO:0030057 "desmosome" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0034332 "adherens junction organization" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0045109 "intermediate filament organization" evidence=IEA

GO:0071896 "protein localization to adherens junction" evidence=IEA

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=IEA

GO:0086069 "bundle of His cell to Purkinje myocyte communication" evidence=IEA

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=IEA

GO:0097110 "scaffold protein binding" evidence=IEA

UNIPROTKB|E2RNG4 DSP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 186 (70.5 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
 Identities = 109/510 (21%), Positives = 215/510 (42%)

Query:     7 DAVLSDVEGEIDVQTSSDEDFSVERFREVLAELN-RERQAREAAENSATELSEKFNRLKA 65
             DA+     G   +Q     +  +++  +  +E N R +Q+ E A  +  + +++  RLKA
Sbjct:  1276 DALQQKACGSEMLQKKQHLEIELKQVIQQRSEDNARHKQSLEEAAKTIQDKNKEIERLKA 1335

Query:    66 LAHESIKRRDESTRQRDEALRE-KEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARD 124
                E  KRR E   +  +      EEI+   ++  TEI        ++ +Q +E T    
Sbjct:  1336 EFQEEAKRRWEYENELAKVRNNYDEEIISLKNQFETEINITKTTIHQLTRQKEEDTS--- 1392

Query:   125 GSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPA 184
             G R+Q+D +T+    L  E++   + L    E +     N +   A G   SQ+   L  
Sbjct:  1393 GYRAQIDHLTRENRSLSEEVKRLKNTLAQTTENLRRVEENAQQQKATGTEVSQRKQQLEI 1452

Query:   185 VVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVA 244
              +  V +   E        +D  AK+  D  +++E+    I  E S  +     L EE A
Sbjct:  1453 ELRQVTQMRTEESMRYKQSLDDAAKTIQDKNKEIERLKQLIETETSARKC----LEEENA 1508

Query:   245 KKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLL-VDQLNYVS 303
             K       L+K+     E +++++ Q  EL +L  +YE     +   R +   D + + S
Sbjct:  1509 KLQRTQYELQKANNSATETISKLKVQEQELTRLRIDYE----RVSQERTVKDQDIVRFQS 1564

Query:   304 XXXXXXXXXXXXXXXGN-LDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVE- 361
                             N L ++   +S    +  D  E +R SL   E   ++T +  + 
Sbjct:  1565 SLKDLQLQKQKVEEELNRLRRTASEDSSKRKKLEDELEGMRRSLK--EQAIKITSLTQQL 1622

Query:   362 KTRDLVQKKSRE-VKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAEN 420
             +   +V+K+S + ++   + +   +++K+     LR     R+S +  +   +L +  EN
Sbjct:  1623 EQASIVKKRSEDDLRQQRDVLDGHLRDKQRTQEELR-----RLSSEVEALRRQLLQEQEN 1677

Query:   421 GLREAGI-DFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGA---LENIVKASQLEIV 476
              +++A + +  F K + +    +++ K   +E  +    NL      LE  ++  +LE  
Sbjct:  1678 -VKQAHLRNEHFQKAIEEKSRSLNESKIE-IERLQSLTENLTKEHLMLEEELRNLRLEYD 1735

Query:   477 ELRHSVEELRAESSLLKEHLEAQAKELSHR 506
             +LR S  E  ++ +     L +Q +  ++R
Sbjct:  1736 DLRRSRSEADSDKNTTISELRSQLQISNNR 1765

GO:0097110 "scaffold protein binding" evidence=IEA

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=IEA

GO:0086069 "bundle of His cell to Purkinje myocyte communication" evidence=IEA

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=IEA

GO:0071896 "protein localization to adherens junction" evidence=IEA

GO:0045109 "intermediate filament organization" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0034332 "adherens junction organization" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0030057 "desmosome" evidence=IEA

GO:0018149 "peptide cross-linking" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0014704 "intercalated disc" evidence=IEA

GO:0005882 "intermediate filament" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005080 "protein kinase C binding" evidence=IEA

GO:0003223 "ventricular compact myocardium morphogenesis" evidence=IEA

GO:0002934 "desmosome organization" evidence=IEA

GO:0001533 "cornified envelope" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_X000211 hypothetical protein (673 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	534
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 59/274 (21%), Positives = 125/274 (45%), Gaps = 14/274 (5%)

Query: 30  ERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKE 89
           E   E+ A+L +  +  ++ +N    L +    L+    E  ++ +E  R+      E E
Sbjct: 674 EELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELE 733

Query: 90  EILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSA- 148
           ++    ++L  E+ E+    +E+ ++L+E+         +L+ + +A   L+ EIE    
Sbjct: 734 QLQSRLEELEEELEELEEELEELQERLEEL-------EEELESLEEALAKLKEEIEELEE 786

Query: 149 --HMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDA 206
               L   +E++  ++   +          +        +   I+   E +EEL  ++D 
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE 846

Query: 207 TAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAE 266
             +   ++ +++E    E+  E+ ELEA    L +E+ +     E LE+ L E + ++AE
Sbjct: 847 LEEELEELEKELE----ELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902

Query: 267 IESQGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300
           ++ +  +LR+ + E E KL+ LE   P L ++L 
Sbjct: 903 LKEEIEKLRERLEELEAKLERLEVELPELEEELE 936

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 71/380 (18%), Positives = 159/380 (41%), Gaps = 30/380 (7%)

Query: 46  REAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEV 105
           +E AE       E   RL+ L  E  K+ ++  RQ ++A R +E      +    E+A +
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQE---LKAELRELELALL 230

Query: 106 NIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV------------- 152
                E+ K+L+E+ +       +L+E+ +  +    EIE     L              
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290

Query: 153 ----TGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATA 208
                 IE++ G++S  +          ++       +   I+   E +EE    ++   
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 209 KSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268
           +   ++ E  E+   +++  + ELE     LREE+A+  + +  +   L E   ++  +E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 269 SQGLELRQLVNEYEDKLK----NLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQS 324
            +   L + + + +++LK     LE  +  L +    + ++ +Q++++   + +   + +
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470

Query: 325 GLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQL 384
            L E L   +      ++ A L  +E+  + ++ V    R +++     +  +   V +L
Sbjct: 471 ELQEELQ--RLEKELSSLEARLDRLEAEQRASQGV----RAVLEALESGLPGVYGPVAEL 524

Query: 385 VKEKEHIVSLLRSALSKRMS 404
           +K KE   + L +AL  R+ 
Sbjct: 525 IKVKEKYETALEAALGNRLQ 544

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 49/320 (15%), Positives = 126/320 (39%), Gaps = 21/320 (6%)

Query: 33  REVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEIL 92
           R   AEL R R+  E  +   + L  +  R++    E  +   +++R+  E  +E E++ 
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 93  RSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIEN-SAHML 151
           +  +KL   + E+      + ++++ V        ++++E+ +    L   + +  A + 
Sbjct: 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789

Query: 152 VTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSR 211
            + I +I  ++S  +          ++ + + A +  + ++ N +  E         + +
Sbjct: 790 HSRIPEIQAELSKLE----------EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839

Query: 212 NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQG 271
               +  EQ    I  E+  L      L EE+ +  + + +LE  L +  ++  E+E+Q 
Sbjct: 840 EQRIDLKEQIK-SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898

Query: 272 LELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLF 331
            EL + + E E +++        L  +L  + +   +++D                    
Sbjct: 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG---------EDEEIPEE 949

Query: 332 LPQETDMEENIRASLAGMES 351
                D++  ++     + +
Sbjct: 950 ELSLEDVQAELQRVEEEIRA 969

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 52/263 (19%), Positives = 111/263 (42%), Gaps = 5/263 (1%)

Query: 29  VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREK 88
            E   E+  EL    +  E       EL EK   L+    E  +  +E  ++      E 
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297

Query: 89  EEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSA 148
             + +    L   +A +    +E+  QL+E+    D    +L E+ +  + L+ E+E+  
Sbjct: 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357

Query: 149 HMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATA 208
             L    E++  ++   ++       + +      A +   I   N  +E L  +++   
Sbjct: 358 AEL----EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

Query: 209 KSRNDVREQMEQRNFEIA-IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267
             R  +++++E+   ++   E+ EL+A +  L EE+ +    +E LE++L E  E++ E 
Sbjct: 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473

Query: 268 ESQGLELRQLVNEYEDKLKNLES 290
           E       + + + + +L +LE 
Sbjct: 474 EQALDAAERELAQLQARLDSLER 496

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 42/246 (17%), Positives = 97/246 (39%), Gaps = 29/246 (11%)

Query: 38  ELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDK 97
           EL    +  E  ++   EL E+   L+    E  +R +E   + +       ++    ++
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 98  LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEK 157
           L  +   +    +E+ ++L+E  +  D    +L+ + + ++ L  EIE     +    EK
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843

Query: 158 ISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQ 217
           +                               ++   + +EEL  +++     + ++ ++
Sbjct: 844 LDELEEE-------------------------LEELEKELEELKEELEELEAEKEELEDE 878

Query: 218 MEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQL 277
           +++   E      ELE  +  L  E+A+    IE L + L E + K+  +E +  EL + 
Sbjct: 879 LKELEEEKE----ELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEE 934

Query: 278 VNEYED 283
           + E  +
Sbjct: 935 LEEEYE 940

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 64/344 (18%), Positives = 141/344 (40%), Gaps = 24/344 (6%)

Query: 195  EIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLE 254
              +E  + +++   KS  +    +E    E+  ++ ELE  +  L+ E+A     +E L+
Sbjct: 677  AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 255  KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIK 314
              L E +E++ E+E +  EL++ + E E++L++LE     L +++  + +    + + ++
Sbjct: 737  SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796

Query: 315  IVDD---------GNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRD 365
             +++           L++   S      +     E +   +  +E         +E+   
Sbjct: 797  ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856

Query: 366  LV-------QKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVA 418
             +       ++   E + L + + +L +EKE +   LR   S+   +    K        
Sbjct: 857  ELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL----KEEIEKLRE 912

Query: 419  ENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVEL 478
                 EA ++    +L    +    + +       E EI  L   +E +     L  +E 
Sbjct: 913  RLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL-GPVNLRAIEE 971

Query: 479  RHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANE 522
               VEE   E    +E LE   ++L   ++ IEEL++++R   +
Sbjct: 972  YEEVEERYEELKSQREDLEEAKEKL---LEVIEELDKEKRERFK 1012

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	534
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.56
PRK02224	880	chromosome segregation protein; Provisional	97.27
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.03
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.75
PHA02562	562	46 endonuclease subunit; Provisional	96.63
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.3
PRK04863	1486	mukB cell division protein MukB; Provisional	96.05
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.78
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.72
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.51
KOG0996	1293	consensus Structural maintenance of chromosome pro	95.28
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.11
PRK02224	880	chromosome segregation protein; Provisional	94.74
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.73
PRK11637	428	AmiB activator; Provisional	94.72
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	94.3
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	92.93
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	91.33
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	90.57
PRK09039	343	hypothetical protein; Validated	89.91
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	89.11
PRK11637	428	AmiB activator; Provisional	88.29
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	88.29
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	88.06
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	86.53
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.31
PF00038	312	Filament: Intermediate filament protein; InterPro:	85.14
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	84.55
KOG0971	1243	consensus Microtubule-associated protein dynactin	84.43
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	83.83
cd07596	218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	83.54
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	82.09
PF04065	233	Not3: Not1 N-terminal domain, CCR4-Not complex com	81.0
PRK03918	880	chromosome segregation protein; Provisional	80.79
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	80.07

>TIGR00606 rad50 rad50

Probab=97.56  E-value=0.33  Score=57.41  Aligned_cols=114  Identities=12%  Similarity=0.191  Sum_probs=78.3

Q ss_pred             hHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHH
Q 009446          194 NEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE  273 (534)
Q Consensus       194 neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~  273 (534)
                      ...+..+-+.++.+.+..+.+....           .++|..++.++.++..+...++...+.+.+ +.           
T Consensus       576 ~~~~~~~~~el~~~~~~~~~~~~el-----------~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~~-----------  632 (1311)
T TIGR00606       576 EDWLHSKSKEINQTRDRLAKLNKEL-----------ASLEQNKNHINNELESKEEQLSSYEDKLFD-VC-----------  632 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-----------
Confidence            6667777777777777777776554           678888888888887777666666555551 11           


Q ss_pred             HHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhh--cCCCccccccccccCCCcc
Q 009446          274 LRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV--DDGNLDQSGLSESLFLPQE  335 (534)
Q Consensus       274 lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~v--d~~k~~~s~lsEs~f~~~e  335 (534)
                         -+..|+..|..++..-......++.+..+...+...+...  ..++.  -.||..-|.+.+
T Consensus       633 ---~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~--C~LC~R~f~~ee  691 (1311)
T TIGR00606       633 ---GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSC--CPVCQRVFQTEA  691 (1311)
T ss_pred             ---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc--CCCCCCCCCChh
Confidence               2345555665566666666777777788888888888888  55555  677888887544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK02224 chromosome segregation protein; Provisional

Probab=97.27  E-value=0.49  Score=52.81  Aligned_cols=98  Identities=19%  Similarity=0.213  Sum_probs=50.3

Q ss_pred             HHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH-------HHHHHHhhchhhhchhHHHHhhhHHHHH
Q 009446          234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV-------NEYEDKLKNLESHRPLLVDQLNYVSKIH  306 (534)
Q Consensus       234 a~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V-------~e~E~klk~~e~~r~lL~dql~~v~~ih  306 (534)
                      ..+..++.+++...+.++.+...+...+..+..++.+++.++..+       ..|+..+..++....-|.+.++.+....
T Consensus       356 ~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~  435 (880)
T PRK02224        356 ERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL  435 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444445555555555555555555554444444       3455555555555555666666666666


Q ss_pred             HHHHHHHHhhc---CCCccccccccccCCC
Q 009446          307 DQVDDIIKIVD---DGNLDQSGLSESLFLP  333 (534)
Q Consensus       307 d~L~~vi~~vd---~~k~~~s~lsEs~f~~  333 (534)
                      ..+...++.+.   .+..  -.+|.+.|-+
T Consensus       436 ~~~~~~l~~~~~~l~~~~--Cp~C~r~~~~  463 (880)
T PRK02224        436 RTARERVEEAEALLEAGK--CPECGQPVEG  463 (880)
T ss_pred             HHHHHHHHHHHHHHhccc--CCCCCCcCCC
Confidence            66666666655   2332  3455555543

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.03  E-value=1.1  Score=52.54  Aligned_cols=110  Identities=23%  Similarity=0.377  Sum_probs=77.7

Q ss_pred             hhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 009446          189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE  268 (534)
Q Consensus       189 v~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~ele  268 (534)
                      -+.+++.-+..+-.++......++.+..+|++-.-    +...+++.+..++.++..-....+.+...+......+..++
T Consensus       801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  876 (1163)
T COG1196         801 ELEEAERRLDALERELESLEQRRERLEQEIEELEE----EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELE  876 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455666666777766666666666665443    44578888888888888888888888888888888888888


Q ss_pred             HhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhH
Q 009446          269 SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV  302 (534)
Q Consensus       269 rE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v  302 (534)
                      ..+..+++....++..++.++....-+-.++..+
T Consensus       877 ~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  910 (1163)
T COG1196         877 DELKELEEEKEELEEELRELESELAELKEEIEKL  910 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888887777775555555444444

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.75  E-value=1.2  Score=49.77  Aligned_cols=30  Identities=13%  Similarity=0.116  Sum_probs=18.0

Q ss_pred             HHHHhhHHHHHHHHHHhhhhHHHHHHHHhh
Q 009446          371 SREVKSLNEAVGQLVKEKEHIVSLLRSALS  400 (534)
Q Consensus       371 ~kE~k~Le~sV~~L~kEnedI~sLLRsALs  400 (534)
                      .....+|......|.+.-..|....+.-..
T Consensus       999 ~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~ 1028 (1179)
T TIGR02168       999 KERYDFLTAQKEDLTEAKETLEEAIEEIDR 1028 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556666666666666666666555543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.63  E-value=0.86  Score=47.94  Aligned_cols=94  Identities=12%  Similarity=0.242  Sum_probs=54.8

Q ss_pred             HHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 009446          187 YGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAE  266 (534)
Q Consensus       187 ygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~e  266 (534)
                      .+.+...++...++=.|++.......+..+.++++        .++...++.++..+..+.+.++.+.+....-+.+|..
T Consensus       298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~--------~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~  369 (562)
T PHA02562        298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEF--------NEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE  369 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666677788888888888888888777777643        3445556556655555555555554444444455554


Q ss_pred             HHHhHHHHHHHHHHHHHHhhch
Q 009446          267 IESQGLELRQLVNEYEDKLKNL  288 (534)
Q Consensus       267 lerE~~~lKe~V~e~E~klk~~  288 (534)
                      ++.....+-+.+..++.++.++
T Consensus       370 l~~~~~~~~~~l~~l~~~l~~~  391 (562)
T PHA02562        370 LQAEFVDNAEELAKLQDELDKI  391 (562)
T ss_pred             HHhhhhchHHHHHHHHHHHHHH
Confidence            4444444434444444444333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.30  E-value=3.1  Score=48.01  Aligned_cols=228  Identities=17%  Similarity=0.220  Sum_probs=139.9

Q ss_pred             ccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 009446           95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP  174 (534)
Q Consensus        95 ~~~~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP  174 (534)
                      .|+.-+.+..++.-+|..++.++..-+.=+..-.+++-.-..++....+|..-.-||                 -..|+|
T Consensus       109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L-----------------~~~g~~  171 (775)
T PF10174_consen  109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML-----------------QSKGLS  171 (775)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhcCCc
Confidence            444445555555566666665555433322222233333334445555555555555                 123444


Q ss_pred             CCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHH
Q 009446          175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLE  254 (534)
Q Consensus       175 ~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~  254 (534)
                      .  +-.+=..++.|-|-..+-.+-.|-..+....+.++.+|++|.+|+ +.                  ...++.-+.+.
T Consensus       172 ~--~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~-~~------------------~~~~a~t~alq  230 (775)
T PF10174_consen  172 A--EAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL-QM------------------ERDDAETEALQ  230 (775)
T ss_pred             c--cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hc------------------CCCchhHHHHH
Confidence            3  111223456677778888888898899999999999999887765 32                  23344555788


Q ss_pred             HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCccccccccccCCCc
Q 009446          255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQ  334 (534)
Q Consensus       255 k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~f~~~  334 (534)
                      +-+..||.+|+.+|+-+..+.+-|..|...+.....-|..+..++..+.+-...+-+=++.+.                 
T Consensus       231 ~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~-----------------  293 (775)
T PF10174_consen  231 TVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLK-----------------  293 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHH-----------------
Confidence            889999999999999888888888777666655556788888888777666655543333322                 


Q ss_pred             ccchhHHHHHhHhhhh-hHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh
Q 009446          335 ETDMEENIRASLAGME-SIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE  387 (534)
Q Consensus       335 etD~Ee~lK~sl~~~k-sI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kE  387 (534)
                               .-|.... -|+.+.+...++.+...++ +.++-.|-.++...-.+
T Consensus       294 ---------~eL~rk~~E~~~~qt~l~~~~~~~~d~-r~hi~~lkesl~~ke~~  337 (775)
T PF10174_consen  294 ---------LELSRKKSELEALQTRLETLEEQDSDM-RQHIEVLKESLRAKEQE  337 (775)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH
Confidence                     1233333 4666677777777777777 55555555555444333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.05  E-value=4.4  Score=49.67  Aligned_cols=30  Identities=7%  Similarity=0.100  Sum_probs=16.8

Q ss_pred             hhchhHHHHHHHhhhhhhhhhhhHHHHHhh
Q 009446          190 IKRTNEIVEELVGQIDATAKSRNDVREQME  219 (534)
Q Consensus       190 ~KR~neiveel~~Q~da~~k~rn~aReqme  219 (534)
                      +.|.++|+.++-.++..-.+.+..|+....
T Consensus       309 L~rI~diL~ELe~rL~kLEkQaEkA~kyle  338 (1486)
T PRK04863        309 LVEMARELAELNEAESDLEQDYQAASDHLN  338 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666666666666555555555433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.78  E-value=4.6  Score=45.61  Aligned_cols=14  Identities=21%  Similarity=0.309  Sum_probs=6.3

Q ss_pred             cccCCCCCCCCCCC
Q 009446          160 GKVSNFKNFSAGGL  173 (534)
Q Consensus       160 ~k~s~~k~f~~~~l  173 (534)
                      |.+-+..|+-.||-
T Consensus       646 G~~~~~~G~~tgG~  659 (1164)
T TIGR02169       646 GELFEKSGAMTGGS  659 (1164)
T ss_pred             ceeEcCCcCccCCC
Confidence            44433344445554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.72  E-value=4.6  Score=45.22  Aligned_cols=32  Identities=19%  Similarity=0.326  Sum_probs=23.4

Q ss_pred             hhhchhHHHHHHHhhhhhhhhhhhHHHHHhhh
Q 009446          189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQ  220 (534)
Q Consensus       189 v~KR~neiveel~~Q~da~~k~rn~aReqmeq  220 (534)
                      -+.|.++|+.++-.|+..-.+....|+...+.
T Consensus       180 nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~  211 (1179)
T TIGR02168       180 KLERTRENLDRLEDILNELERQLKSLERQAEK  211 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999988888776666666655443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.51  E-value=10  Score=47.81  Aligned_cols=79  Identities=18%  Similarity=0.260  Sum_probs=48.4

Q ss_pred             hhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009446          203 QIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY  281 (534)
Q Consensus       203 Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~  281 (534)
                      |++....+...-+...|-++++.--.++.++..++-|=.-..+..++...|.+++.+.+.+++.+.+....+...++++
T Consensus      1228 ~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~ 1306 (1930)
T KOG0161|consen 1228 QLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEEL 1306 (1930)
T ss_pred             HHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344445555556666666666666665555555667777788888888888888887777444444444433

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.28  E-value=9.7  Score=46.06  Aligned_cols=154  Identities=22%  Similarity=0.279  Sum_probs=95.9

Q ss_pred             hhcccCCCCCCCCCC-CCCCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHh
Q 009446          158 ISGKVSNFKNFSAGG-LPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI  236 (534)
Q Consensus       158 is~k~s~~k~f~~~~-lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~i  236 (534)
                      .||..|+--+-..+| .-++.--||..+.+---+-|+-.-+.+..+|+-..--.=++..-+...|--+.-+..+.|++++
T Consensus       750 ~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~  829 (1293)
T KOG0996|consen  750 KSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASV  829 (1293)
T ss_pred             ccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHH
Confidence            355555443332333 4444446677766766666666666666666655544445555555556566666677777777


Q ss_pred             hhchHHHhhhhhhHHHHHHH----------HHHhHHHHHHHHHhHHHH-----H-HHHHHHHHHhhchhhhchhHHH-Hh
Q 009446          237 SGLREEVAKKSSFIENLEKS----------LIEKDEKVAEIESQGLEL-----R-QLVNEYEDKLKNLESHRPLLVD-QL  299 (534)
Q Consensus       237 s~lr~eva~k~s~~e~l~k~----------~~eke~ki~elerE~~~l-----K-e~V~e~E~klk~~e~~r~lL~d-ql  299 (534)
                      .++-..++--.+-+-.+++.          +.++.+.|+++++|++++     | ++|.+|-.++   +.-.+.++. |=
T Consensus       830 k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i---~~i~~e~~q~qk  906 (1293)
T KOG0996|consen  830 KRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKI---DEIGGEKVQAQK  906 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHhhchhhHHhH
Confidence            66666444444444444433          345577799999999999     5 8888888888   544554444 77


Q ss_pred             hhHHHHHHHHHHHHH
Q 009446          300 NYVSKIHDQVDDIIK  314 (534)
Q Consensus       300 ~~v~~ihd~L~~vi~  314 (534)
                      ..+.+++++|..+-.
T Consensus       907 ~kv~~~~~~~~~l~~  921 (1293)
T KOG0996|consen  907 DKVEKINEQLDKLEA  921 (1293)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            788888888877743

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.11  E-value=7.6  Score=43.93  Aligned_cols=50  Identities=6%  Similarity=0.200  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHH
Q 009446           30 ERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTR   79 (534)
Q Consensus        30 ~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r   79 (534)
                      ..+..+..+++.-...-...+.....++..+..+..-...+-+....+..
T Consensus       674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~  723 (1164)
T TIGR02169       674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK  723 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555544444444555555555555555544444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=94.74  E-value=9.2  Score=43.02  Aligned_cols=41  Identities=22%  Similarity=0.331  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446          249 FIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE  289 (534)
Q Consensus       249 ~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e  289 (534)
                      .+++....+.+...++.++..++..++..+.++....+.++
T Consensus       524 ~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~  564 (880)
T PRK02224        524 LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE  564 (880)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555556666677777777777777777766665553333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.73  E-value=17  Score=46.04  Aligned_cols=57  Identities=16%  Similarity=0.281  Sum_probs=33.0

Q ss_pred             ccchhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhh
Q 009446           95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHML  151 (534)
Q Consensus        95 ~~~~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL  151 (534)
                      .+..+..+.+..++..+.+.++.++.-.=+-.|.+...+.|++..|..+++.-.+=|
T Consensus      1085 ~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555666666777777777666655444445555556666655555555444333

>PRK11637 AmiB activator; Provisional

Probab=94.72  E-value=1.4  Score=46.06  Aligned_cols=88  Identities=16%  Similarity=0.268  Sum_probs=51.4

Q ss_pred             HHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHH
Q 009446          195 EIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLEL  274 (534)
Q Consensus       195 eiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~l  274 (534)
                      ..--+++.++..+.+.-...+.+++..-=+..-...++++....|....+.+...+..|++.....+..+.+++++...|
T Consensus       166 ~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L  245 (428)
T PRK11637        166 QARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL  245 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555444444444444444333444445566666666666667777777777777777777777777666666


Q ss_pred             HHHHHHHH
Q 009446          275 RQLVNEYE  282 (534)
Q Consensus       275 Ke~V~e~E  282 (534)
                      ...+.++.
T Consensus       246 ~~~I~~l~  253 (428)
T PRK11637        246 RDSIARAE  253 (428)
T ss_pred             HHHHHHHH
Confidence            66665543

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=94.30  E-value=20  Score=45.12  Aligned_cols=404  Identities=17%  Similarity=0.199  Sum_probs=183.4

Q ss_pred             HHHHHHHHH----HHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHH-------HHHHHhhhccc---
Q 009446           32 FREVLAELN----RERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALR-------EKEEILRSNDK---   97 (534)
Q Consensus        32 ~~~l~ael~----~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r-------~ke~~~~~~~~---   97 (534)
                      |.+-.++++    +--..+-.+|..++++..+..+|+.--.+...+++.+.-......-       ++.+....-+.   
T Consensus        29 l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~  108 (1822)
T KOG4674|consen   29 LPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKL  108 (1822)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence            344455554    3335566788889999999999999888888877766655554221       22333333333   


Q ss_pred             ----hhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCC
Q 009446           98 ----LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGL  173 (534)
Q Consensus        98 ----~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~l  173 (534)
                          ++.+-.+++++++.+...+...-              .-.+++.+++.....-|.+..-+++-.-.          
T Consensus       109 ~~~~l~~~~se~~~qkr~l~~~le~~~--------------~ele~l~~~n~~l~~ql~ss~~~~~e~e~----------  164 (1822)
T KOG4674|consen  109 ENSQLRRAKSELQEQKRQLMELLERQK--------------AELEALESENKDLNDQLKSSTKTLSELEA----------  164 (1822)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence                33333344444444433333321              12455666666655555555444331110          


Q ss_pred             CCCccccCchhHHHHhhhchhHHHHH---HHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhH
Q 009446          174 PRSQKYTGLPAVVYGVIKRTNEIVEE---LVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFI  250 (534)
Q Consensus       174 P~SqKYtGl~avaygv~KR~neivee---l~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~  250 (534)
                          +-.+.++-.-.+=.+-+-.+-+   |.+++.--.+.-.-.-+...--.-+--|+|++|+.-+++++.+++.=.+-.
T Consensus       165 ----r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~  240 (1822)
T KOG4674|consen  165 ----RLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKN  240 (1822)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1111111111111111111110   111111111111111111111111223455555555555555554444444


Q ss_pred             HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCcccccccccc
Q 009446          251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESL  330 (534)
Q Consensus       251 e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~~~s~lsEs~  330 (534)
                      ..|.....+-..+|-.+-.++..+++.-..++.++              .-=-..+..|.++.+.-              
T Consensus       241 ~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf--------------~~El~~q~kL~eL~ks~--------------  292 (1822)
T KOG4674|consen  241 KSLKQQNEELSKKIESLNLELSKLKDTAESSEEKF--------------EKELSTQKKLNELWKSK--------------  292 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------------HHHHHHHHHHHHHHHHH--------------
Confidence            44443333333333333334444444444433333              00011122222222211              


Q ss_pred             CCCcccchhHHHHHhHhhhhhHHHHHHHHHHHhHHH-------HHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhc
Q 009446          331 FLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDL-------VQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRM  403 (534)
Q Consensus       331 f~~~etD~Ee~lK~sl~~~ksI~eLakeV~~Kv~~~-------~E~k~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKe  403 (534)
                          -.|.......+..+...+.-|...+..-...+       ....++....++..|.+|..+-.|-+..+..++..-+
T Consensus       293 ----~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~  368 (1822)
T KOG4674|consen  293 ----LEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSM  368 (1822)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccch
Confidence                11333334445555555555554554444333       3334455557778888888888888888887555322


Q ss_pred             ccCCCCchhhHHHHhhhhhhhhcccchhhcccCCCCCCCCccccCCCcchhHHHHhHHHHHHHHHHHH---HHHHHHHHH
Q 009446          404 SVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKAS---QLEIVELRH  480 (534)
Q Consensus       404 a~E~~qkrseLLQiAE~GLqevGfgF~~~~i~Gdg~~e~S~d~~~~~s~eEdEV~SLAsalEniMK~s---qlEI~eLrh  480 (534)
                      -       ++..-.|.++ .+-|+-|.  ++.            +.-..-.+++-++-.-+++.-..+   --++.++-+
T Consensus       369 ~-------s~~~a~~s~~-~~~~~sLt--k~y------------s~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p  426 (1822)
T KOG4674|consen  369 V-------SEKAALASSL-IRPGSSLT--KLY------------SKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAP  426 (1822)
T ss_pred             h-------hhHHHHHHhh-cccchhHH--HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            2       1111112221 22222221  111            001112223333333333322222   234555566


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Q 009446          481 SVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKE  517 (534)
Q Consensus       481 sLEEsRsEs~~Lq~l~E~QaKEIa~~~~~IkELEERE  517 (534)
                      -|.+.|++..|.+.-...+..++.....-|..+|...
T Consensus       427 ~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~  463 (1822)
T KOG4674|consen  427 ILKEQRSELERMQETKAELSEELDFSNQKIQKLEKEL  463 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888888888888888877777777543

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=92.93  E-value=29  Score=42.58  Aligned_cols=219  Identities=17%  Similarity=0.244  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhhh
Q 009446           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIA  108 (534)
Q Consensus        29 ~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~  108 (534)
                      ..+|+.-+||.++=.+.-..|..+.+|.+.+-.|.       +-+=.-..-|-+++.                     +-
T Consensus      1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~-------~~~a~as~~q~~~s~---------------------~e 1472 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRA-------LEQANASRSQMEESN---------------------RE 1472 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHH---------------------HH
Confidence            45677777777777777777777777766554332       222111111112211                     12


Q ss_pred             HHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCc----cccCchh
Q 009446          109 KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ----KYTGLPA  184 (534)
Q Consensus       109 ~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~Sq----KYtGl~a  184 (534)
                      -+.+.+|+-+.+-+-+-+-+++.+++.  .-|..+|-....-+-.=..+|--.|+..+|. -+=|-++-    .-.-|++
T Consensus      1473 l~~Li~~v~~Flt~~~adp~si~~vA~--~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nV-d~IL~~T~~di~ra~~L~s 1549 (1758)
T KOG0994|consen 1473 LRNLIQQVRDFLTQPDADPDSIEEVAE--EVLALELPLTPEQIQQLTGEIQERVASLPNV-DAILSRTKGDIARAENLQS 1549 (1758)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhccCCCCHHHHHHHHHHHHHHHHhcccH-HHHHHhhhhhHHHHHHHHH
Confidence            223445555666665555666666554  3466677666666655566666666665553 11132220    1123555


Q ss_pred             HHHHhhhchhHH---HHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhH
Q 009446          185 VVYGVIKRTNEI---VEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKD  261 (534)
Q Consensus       185 vaygv~KR~nei---veel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke  261 (534)
                      .|--.=|++.++   +|+++.-+..+.++-+.|..-|.|-+           +.|..-++-+++--.+....|+-+.---
T Consensus      1550 ~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~-----------~~~~~a~~~l~kv~~~t~~aE~~~~~a~ 1618 (1758)
T KOG0994|consen 1550 EAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD-----------RDIRLAQQLLAKVQEETAAAEKLATSAT 1618 (1758)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554444444433   45555555666666677766666543           3344444444554445555555566666


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 009446          262 EKVAEIESQGLELRQLVNEYEDKLKNLE  289 (534)
Q Consensus       262 ~ki~elerE~~~lKe~V~e~E~klk~~e  289 (534)
                      ..+.+|++-|+.||-+...-.+.+++++
T Consensus      1619 q~~~eL~~~~e~lk~~~~qns~~A~~a~ 1646 (1758)
T KOG0994|consen 1619 QQLGELETRMEELKHKAAQNSAEAKQAE 1646 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            7778888877777777655444444444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=91.33  E-value=38  Score=40.36  Aligned_cols=38  Identities=18%  Similarity=0.340  Sum_probs=17.6

Q ss_pred             hHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 009446          232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES  269 (534)
Q Consensus       232 LEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~eler  269 (534)
                      |+.-|..+...+......+..+...+..-+..+.++..
T Consensus       672 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  709 (1163)
T COG1196         672 LEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRR  709 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444443

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=90.57  E-value=25  Score=37.01  Aligned_cols=185  Identities=21%  Similarity=0.277  Sum_probs=101.3

Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCC---CCCCCCCC--
Q 009446           98 LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSN---FKNFSAGG--  172 (534)
Q Consensus        98 ~s~~l~~v~~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~---~k~f~~~~--  172 (534)
                      |-.|+.-+...++-+.+.++.+..+       |-.--.|+..|...+..  ++-.-+|+.....+.|   .-+|.|++  
T Consensus       121 L~kE~~li~~~~~lL~~~l~~~~eQ-------l~~lr~ar~~Le~Dl~d--K~~A~~ID~~~~~L~~~S~~i~~~~~~~r  191 (384)
T PF03148_consen  121 LLKEVELIENIKRLLQRTLEQAEEQ-------LRLLRAARYRLEKDLSD--KFEALEIDTQCLSLNNNSTNISYKPGSTR  191 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCccCCCcccCCccc
Confidence            4445555666666666666666554       22222233334333322  2333344444433333   22233322  


Q ss_pred             -CCCCccccCchhHHHHhhhchhHHHHHH---Hhhhhhh-hhhhhHHHHH-------hhhhcceeeeeehhhHHHhhhch
Q 009446          173 -LPRSQKYTGLPAVVYGVIKRTNEIVEEL---VGQIDAT-AKSRNDVREQ-------MEQRNFEIAIEVSELEATISGLR  240 (534)
Q Consensus       173 -lP~SqKYtGl~avaygv~KR~neiveel---~~Q~da~-~k~rn~aReq-------meqrny~iAIEVSqLEa~is~lr  240 (534)
                       -|.+.-|.-....++..|.++..-+..-   -..|+.+ ...+++.+.|       +.+|=++.--=-.+||-......
T Consensus       192 ~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~  271 (384)
T PF03148_consen  192 IPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTL  271 (384)
T ss_pred             ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence             2444455566666677777665433221   1112211 1223333333       33444444445568888888888


Q ss_pred             HHHhhhhhhHHHHHHHHHHhHHHHHHHHH------------------------hHHHHHHHHHHHHHHhhchhhh
Q 009446          241 EEVAKKSSFIENLEKSLIEKDEKVAEIES------------------------QGLELRQLVNEYEDKLKNLESH  291 (534)
Q Consensus       241 ~eva~k~s~~e~l~k~~~eke~ki~eler------------------------E~~~lKe~V~e~E~klk~~e~~  291 (534)
                      +|++.=...++.|++++.+|++-+.-.+.                        ||..|++.+..|..+|..++..
T Consensus       272 ~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~  346 (384)
T PF03148_consen  272 QEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEAS  346 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89998889999999999999776443222                        7777888887777777666533

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PRK09039 hypothetical protein; Validated

Probab=89.91  E-value=7.8  Score=40.31  Aligned_cols=152  Identities=14%  Similarity=0.182  Sum_probs=76.3

Q ss_pred             HhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhc---ceeeeeehhhHHHhhhchHHHhhh-------hhhHHHHHHHH
Q 009446          188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRN---FEIAIEVSELEATISGLREEVAKK-------SSFIENLEKSL  257 (534)
Q Consensus       188 gv~KR~neiveel~~Q~da~~k~rn~aReqmeqrn---y~iAIEVSqLEa~is~lr~eva~k-------~s~~e~l~k~~  257 (534)
                      +-..+..+.+.+|=.|++++...|.++..+.....   -+.---..+|.+.+...+...+..       .+.++.|.+++
T Consensus        74 ~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql  153 (343)
T PRK09039         74 QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL  153 (343)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34467788899999999999999999988766321   011111222333333333333333       33444444444


Q ss_pred             HHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHH----HHHHHhh-----cCCCcccccccc
Q 009446          258 IEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV----DDIIKIV-----DDGNLDQSGLSE  328 (534)
Q Consensus       258 ~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L----~~vi~~v-----d~~k~~~s~lsE  328 (534)
                      ..-+..|.+.+....+.+.+++.|...|      +..|.+-...+......+    .+++..-     .++..  ..-++
T Consensus       154 a~le~~L~~ae~~~~~~~~~i~~L~~~L------~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~g~~~--~~~~~  225 (343)
T PRK09039        154 AALEAALDASEKRDRESQAKIADLGRRL------NVALAQRVQELNRYRSEFFGRLREILGDREGIRIVGDRF--VFQSE  225 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEECCEE--EecCC
Confidence            4444444444444444444444444444      333333344444454444    3333221     11211  12356


Q ss_pred             ccCCCcccchhHHHHHhHh
Q 009446          329 SLFLPQETDMEENIRASLA  347 (534)
Q Consensus       329 s~f~~~etD~Ee~lK~sl~  347 (534)
                      .+|-++.+++...-+..|.
T Consensus       226 vlF~~gsa~L~~~~~~~L~  244 (343)
T PRK09039        226 VLFPTGSAELNPEGQAEIA  244 (343)
T ss_pred             ceeCCCCcccCHHHHHHHH
Confidence            7888887776664444443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=89.11  E-value=3.4  Score=37.20  Aligned_cols=72  Identities=25%  Similarity=0.382  Sum_probs=36.4

Q ss_pred             ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHH
Q 009446          229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS  303 (534)
Q Consensus       229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~  303 (534)
                      ++.|.+..+.++.++..-.+..+.....+...+....+   +=..|..-+.+++..+..|..||.+|.+||..+|
T Consensus        61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~---qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ls  132 (132)
T PF07926_consen   61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEE---QKEQLEKELSELEQRIEDLNEQNKLLHDQLESLS  132 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            33444444444444444444444444444433332221   1123334444444444445899999999998764

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK11637 AmiB activator; Provisional

Probab=88.29  E-value=37  Score=35.76  Aligned_cols=53  Identities=13%  Similarity=0.240  Sum_probs=22.6

Q ss_pred             HHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446          233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL  285 (534)
Q Consensus       233 Ea~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl  285 (534)
                      +..|..++.+...-...+..+++.+.....+|..++.++..+...+..++..+
T Consensus        60 ~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI  112 (428)
T PRK11637         60 EKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI  112 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444444444444444444444444444444

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=88.29  E-value=7.8  Score=40.56  Aligned_cols=138  Identities=20%  Similarity=0.312  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHH----H
Q 009446           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIA----E  104 (534)
Q Consensus        29 ~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~----~  104 (534)
                      .+++.+|..-||+=.+-|.--.+-+..+++.+..=|.=.-+.-..=--++|+..--+-.-+..-+.++||+.+|.    +
T Consensus        17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~q   96 (307)
T PF10481_consen   17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQ   96 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHH
Confidence            567788888887766666666667777777776666544444333333444444434444555577777887776    2


Q ss_pred             Hh---hhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccC
Q 009446          105 VN---IAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTG  181 (534)
Q Consensus       105 v~---~~~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtG  181 (534)
                      |+   +|-.-..+|++-..-          +..    -+++|++.|-.-..+|--.++---.|-|+| +.|++.+|.|+|
T Consensus        97 v~~lEgQl~s~Kkqie~Leq----------elk----r~KsELErsQ~~~~~~~~sl~~~stpqk~f-~~p~tp~q~~~~  161 (307)
T PF10481_consen   97 VNFLEGQLNSCKKQIEKLEQ----------ELK----RCKSELERSQQAASSGDVSLNPCSTPQKSF-ATPLTPSQYYSD  161 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------HHH----HHHHHHHHHHHhhccCCccccccCCchhhc-cCCCChhhhhhh
Confidence            21   111222223322111          123    388999988887777776777677788899 788888877765

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=88.06  E-value=28  Score=34.11  Aligned_cols=101  Identities=18%  Similarity=0.226  Sum_probs=72.1

Q ss_pred             hhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 009446          202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY  281 (534)
Q Consensus       202 ~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~  281 (534)
                      ..+...+..-.+++..|++|++...==+.+||..+       ..-....+....-+.+-..++.-++.++....++++.+
T Consensus        67 ~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l-------~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~  139 (237)
T PF00261_consen   67 EEAEKRADESERARKVLENREQSDEERIEELEQQL-------KEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAA  139 (237)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHH-------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34445555556788999999998877777777777       44445556666667777778888888888888888888


Q ss_pred             HHHhhchhhhchhHHHHhhhHHHHHHHH
Q 009446          282 EDKLKNLESHRPLLVDQLNYVSKIHDQV  309 (534)
Q Consensus       282 E~klk~~e~~r~lL~dql~~v~~ihd~L  309 (534)
                      +.+++.|+..=..+-.+|.++..-.+..
T Consensus       140 E~ki~eLE~el~~~~~~lk~lE~~~~~~  167 (237)
T PF00261_consen  140 ESKIKELEEELKSVGNNLKSLEASEEKA  167 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            8888888866666666666655444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=86.53  E-value=86  Score=38.13  Aligned_cols=118  Identities=19%  Similarity=0.154  Sum_probs=84.0

Q ss_pred             HHHHHHhHHHHHhhH------HHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhcccch
Q 009446          357 RIVVEKTRDLVQKKS------REVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFK  430 (534)
Q Consensus       357 keV~~Kv~~~~E~k~------kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea~E~~qkrseLLQiAE~GLqevGfgF~  430 (534)
                      +.++.+++--.++++      ++...|++.+..|.+.+.....+-+.+.+|++++.....+..          ++     
T Consensus       394 ss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~----------~s-----  458 (1195)
T KOG4643|consen  394 SSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVT----------RS-----  458 (1195)
T ss_pred             hhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------Hh-----
Confidence            345556665555554      345589999999999999999999999999988442222211          11     


Q ss_pred             hhcccCCCCCCCCccccCCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHH
Q 009446          431 FSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLE---AQAKE  502 (534)
Q Consensus       431 ~~~i~Gdg~~e~S~d~~~~~s~eEdEV~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E---~QaKE  502 (534)
                          ++.         -.-..+..+-+.+++.-+..+.-.++..|..|..+|+.+--|.++|....+   .|.|+
T Consensus       459 ----~~r---------q~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt  520 (1195)
T KOG4643|consen  459 ----LSR---------QSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKT  520 (1195)
T ss_pred             ----HHH---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                110         011224556699999999999999999999999999999999988876543   45544

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.31  E-value=23  Score=32.12  Aligned_cols=54  Identities=19%  Similarity=0.330  Sum_probs=32.2

Q ss_pred             HhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhh
Q 009446          188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAK  245 (534)
Q Consensus       188 gv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~  245 (534)
                      .-..++=.+|-+||.++|-....|...-.++-.-.|++    ..|...+.+|++.++.
T Consensus        31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~----~~l~~~~~rL~~~~~~   84 (151)
T PF11559_consen   31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDI----ERLQNDVERLKEQLEE   84 (151)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHH
Confidence            33455667889999999887777766555554444432    3444455444444443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=85.14  E-value=42  Score=33.25  Aligned_cols=88  Identities=20%  Similarity=0.242  Sum_probs=40.1

Q ss_pred             ehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH----HHHHHHhhchhhhchhHHHHhhhHHH
Q 009446          229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV----NEYEDKLKNLESHRPLLVDQLNYVSK  304 (534)
Q Consensus       229 VSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V----~e~E~klk~~e~~r~lL~dql~~v~~  304 (534)
                      +..-...+..+|+|+..-...+..|...+..-..+...|++.+..+....    ..+...+..++..-.-|-..+.....
T Consensus       204 ~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~  283 (312)
T PF00038_consen  204 SEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLR  283 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence            33344455555666655555555555555555555555555333332222    23333343334333334444444434


Q ss_pred             HHHHHHHHHHhh
Q 009446          305 IHDQVDDIIKIV  316 (534)
Q Consensus       305 ihd~L~~vi~~v  316 (534)
                      =|..|.++--.+
T Consensus       284 ey~~Ll~~K~~L  295 (312)
T PF00038_consen  284 EYQELLDVKLAL  295 (312)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhH
Confidence            444444444333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=84.55  E-value=78  Score=35.85  Aligned_cols=88  Identities=27%  Similarity=0.355  Sum_probs=56.0

Q ss_pred             hhhhhhhhhhhHH---HHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 009446          202 GQIDATAKSRNDV---REQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV  278 (534)
Q Consensus       202 ~Q~da~~k~rn~a---Reqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V  278 (534)
                      .|++-+-+-+++-   ..+++..+-+.-++|.+|++.+...+++...-....+.+..+......+...|..+...++.+|
T Consensus       143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri  222 (546)
T PF07888_consen  143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI  222 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555553   3455566656666777777777777777776666666666655555555666666666677777


Q ss_pred             HHHHHHhhchh
Q 009446          279 NEYEDKLKNLE  289 (534)
Q Consensus       279 ~e~E~klk~~e  289 (534)
                      .+|+..+.++.
T Consensus       223 ~~LEedi~~l~  233 (546)
T PF07888_consen  223 RELEEDIKTLT  233 (546)
T ss_pred             HHHHHHHHHHH
Confidence            77766665554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=84.43  E-value=1e+02  Score=37.26  Aligned_cols=289  Identities=22%  Similarity=0.338  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhHHHH---HHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccchhHHHHHHhh
Q 009446           31 RFREVLAELNRERQAREAAENSATELSE---KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNI  107 (534)
Q Consensus        31 ~~~~l~ael~~er~~r~aae~s~~e~~~---~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~  107 (534)
                      .+++|..+|+-=|..|.---.-+-|++.   .|.-|-.|---.+-+--++.|+=-.+-.+++++.-..++.-.++.+.-.
T Consensus       232 QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad  311 (1243)
T KOG0971|consen  232 QVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTAD  311 (1243)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677777777666655443333444332   2333333333444455556666666666778888888888777764432


Q ss_pred             h-------------HHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 009446          108 A-------------KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP  174 (534)
Q Consensus       108 ~-------------~de~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP  174 (534)
                      .             |-|.-.+==++++.      .+|+.+--++-|++|+++-            |          +   
T Consensus       312 ~iEmaTldKEmAEERaesLQ~eve~lkE------r~deletdlEILKaEmeek------------G----------~---  360 (1243)
T KOG0971|consen  312 AIEMATLDKEMAEERAESLQQEVEALKE------RVDELETDLEILKAEMEEK------------G----------S---  360 (1243)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc------------C----------C---
Confidence            2             11111111122333      2344555566677777664            1          0   


Q ss_pred             CCccccCchhHHHHhhhch---hH-HHHHHHhhhhhhhhh---hhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhh
Q 009446          175 RSQKYTGLPAVVYGVIKRT---NE-IVEELVGQIDATAKS---RNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKS  247 (534)
Q Consensus       175 ~SqKYtGl~avaygv~KR~---ne-iveel~~Q~da~~k~---rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~  247 (534)
                            |-|+..-|-.|+.   |. +=|-|||-+|-.+-.   |..+---||-.|-    |+++|.              
T Consensus       361 ------~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~s----E~~eL~--------------  416 (1243)
T KOG0971|consen  361 ------DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNS----ELEELR--------------  416 (1243)
T ss_pred             ------CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh----HHHHHH--------------
Confidence                  1111111223332   21 334455555544322   2223333333332    122222              


Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHhHH---HHHHHHHHHHHHhhchhhhchhHHH---HhhhHHHHHHHHHHHHHhhcCCCc
Q 009446          248 SFIENLEKSLIEKDEKVAEIESQGL---ELRQLVNEYEDKLKNLESHRPLLVD---QLNYVSKIHDQVDDIIKIVDDGNL  321 (534)
Q Consensus       248 s~~e~l~k~~~eke~ki~elerE~~---~lKe~V~e~E~klk~~e~~r~lL~d---ql~~v~~ihd~L~~vi~~vd~~k~  321 (534)
                      ..-|+|++.+.+-|.+|+++...|-   ..-+-|.-|-++-=|||++=++|-+   +|.-+.-|+++|.+.-+-+.-+  
T Consensus       417 r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~D--  494 (1243)
T KOG0971|consen  417 RQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELD--  494 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            2335555555555666664444111   0111122232333344566666655   4445566777776665544311  


Q ss_pred             cccccccccCCCcccchh-----HHHHHhHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh
Q 009446          322 DQSGLSESLFLPQETDME-----ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE  387 (534)
Q Consensus       322 ~~s~lsEs~f~~~etD~E-----e~lK~sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kE  387 (534)
                          |      ..++|+-     +..+-.-+.+++||++--++. |++.++-.=...+.++-..+.++.+|
T Consensus       495 ----L------reEld~~~g~~kel~~r~~aaqet~yDrdqTI~-KfRelva~Lqdqlqe~~dq~~Sseee  554 (1243)
T KOG0971|consen  495 ----L------REELDMAKGARKELQKRVEAAQETVYDRDQTIK-KFRELVAHLQDQLQELTDQQESSEEE  554 (1243)
T ss_pred             ----H------HHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence                1      1223322     223334567888998876553 66666655554555554444444444

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=83.83  E-value=96  Score=36.36  Aligned_cols=154  Identities=19%  Similarity=0.242  Sum_probs=84.1

Q ss_pred             hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHH
Q 009446          230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV  309 (534)
Q Consensus       230 SqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L  309 (534)
                      +.|-+-+-.||-++..+-+.++...+++..-....+-+.-|++.|++..+..+.++.-|..+-.-|-+++.   .=...|
T Consensus       339 ~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~---ekd~ql  415 (775)
T PF10174_consen  339 EMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR---EKDRQL  415 (775)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            34666777777777778777777777777777777777778889999988888888555444222333331   222335


Q ss_pred             HHHHHhhcCCCccccccccccCCCcccchhHHHHHhHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhh
Q 009446          310 DDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKE  389 (534)
Q Consensus       310 ~~vi~~vd~~k~~~s~lsEs~f~~~etD~Ee~lK~sl~~~ksI~eLakeV~~Kv~~~~E~k~kE~k~Le~sV~~L~kEne  389 (534)
                      .....++.. ..+ +  +.+-+. . +-+++.+...-.-...|-++-.....-...=.+.-+++.+.+..+|.+|-++-.
T Consensus       416 ~~~k~Rl~~-~~d-~--~~~~~~-~-~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLs  489 (775)
T PF10174_consen  416 DEEKERLSS-QAD-S--SNEDEA-L-ETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELS  489 (775)
T ss_pred             HHHHHHHhc-ccc-c--cchHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            555566654 331 1  000000 0 113333333332233332221111212223335566677777778877777655


Q ss_pred             hHH
Q 009446          390 HIV  392 (534)
Q Consensus       390 dI~  392 (534)
                      +-.
T Consensus       490 Ek~  492 (775)
T PF10174_consen  490 EKE  492 (775)
T ss_pred             HHH
Confidence            444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins

Probab=83.54  E-value=22  Score=32.32  Aligned_cols=65  Identities=23%  Similarity=0.333  Sum_probs=39.7

Q ss_pred             HHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 009446          213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL  285 (534)
Q Consensus       213 ~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~kl  285 (534)
                      -+|+-|..|+ .+..++..++..+       +++.+..+.|..+-..+.++|..++.++..+.+.+.......
T Consensus       104 s~k~~l~~R~-~~~~~~~~~~~~l-------~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~  168 (218)
T cd07596         104 AVKETLDDRA-DALLTLQSLKKDL-------ASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRY  168 (218)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566677776 5666666666666       666666666655544455677766666666655555544333

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=82.09  E-value=0.43  Score=54.72  Aligned_cols=38  Identities=42%  Similarity=0.539  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHH
Q 009446           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKAL   66 (534)
Q Consensus        29 ~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlkal   66 (534)
                      .-++.+|-.+|+.||.+|..||-.++.|..-+.=|+.-
T Consensus        45 q~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~   82 (859)
T PF01576_consen   45 QARIEELEEELESERQARAKAEKQRRDLSEELEELKER   82 (859)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888999999999999999999998888766654

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []

Probab=81.00  E-value=14  Score=37.16  Aligned_cols=130  Identities=25%  Similarity=0.279  Sum_probs=85.8

Q ss_pred             cccCCCCCCCCCCCCCCccccCchhHHHHhhhchhHHHHHHHhhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhc
Q 009446          160 GKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL  239 (534)
Q Consensus       160 ~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~l  239 (534)
                      =|-+--|+||..||...+|+...+.-.--++.-.+..|++|=+|||..                         ||-+   
T Consensus        94 EkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~-------------------------E~E~---  145 (233)
T PF04065_consen   94 EKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQL-------------------------EAEI---  145 (233)
T ss_pred             HHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHH---
Confidence            345677999999999998887777766677777777777777776643                         2222   


Q ss_pred             hHHHhhhhhhHHHHH------HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhHHHHhhhHHHHHHHHHHHH
Q 009446          240 REEVAKKSSFIENLE------KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDII  313 (534)
Q Consensus       240 r~eva~k~s~~e~l~------k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~e~~r~lL~dql~~v~~ihd~L~~vi  313 (534)
                                 |+|.      +..+.+.+++.+++.-++-.+--|..||.-|+.|+.-. +   .-..|..|++.|.-.|
T Consensus       146 -----------E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~-l---~~e~V~~ikedieyYv  210 (233)
T PF04065_consen  146 -----------ESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDE-L---DPEQVEDIKEDIEYYV  210 (233)
T ss_pred             -----------HHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C---CHHHHHHHHHHHHHHH
Confidence                       2222      23446788888888888888888888888888777332 1   1255567888888888


Q ss_pred             HhhcCCC-ccccccccccCC
Q 009446          314 KIVDDGN-LDQSGLSESLFL  332 (534)
Q Consensus       314 ~~vd~~k-~~~s~lsEs~f~  332 (534)
                      +.=.+.- .+-..+++.+++
T Consensus       211 e~n~d~Df~ede~iYddl~L  230 (233)
T PF04065_consen  211 ESNQDPDFEEDEDIYDDLNL  230 (233)
T ss_pred             HcCCCCcccchHhHhhccCC
Confidence            8633321 222344444444

This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK03918 chromosome segregation protein; Provisional

Probab=80.79  E-value=1.1e+02  Score=34.70  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHH
Q 009446           34 EVLAELNRERQAREAAENSATELSEKFNRLKALA   67 (534)
Q Consensus        34 ~l~ael~~er~~r~aae~s~~e~~~~f~rlkala   67 (534)
                      ++.+++..=+..-..++.....++..++.|....
T Consensus       204 ~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~  237 (880)
T PRK03918        204 EVLREINEISSELPELREELEKLEKEVKELEELK  237 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444434444444444444444444444443

>TIGR00606 rad50 rad50

Probab=80.07  E-value=1.5e+02  Score=36.02  Aligned_cols=29  Identities=14%  Similarity=0.192  Sum_probs=15.7

Q ss_pred             hhhchhHHHHhhhHHHHHHHHHHHHHhhc
Q 009446          289 ESHRPLLVDQLNYVSKIHDQVDDIIKIVD  317 (534)
Q Consensus       289 e~~r~lL~dql~~v~~ihd~L~~vi~~vd  317 (534)
                      ...+--|..++.....+...|.++...+.
T Consensus       870 ~~~klkl~~~l~~r~~le~~L~el~~el~  898 (1311)
T TIGR00606       870 KSEKLQIGTNLQRRQQFEEQLVELSTEVQ  898 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455566666666666655543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	534
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 77.6 bits (190), Expect = 5e-15
 Identities = 71/514 (13%), Positives = 171/514 (33%), Gaps = 128/514 (24%)

Query: 81  RDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKAR---DGSRSQLDEVTKA- 136
            +   ++ +++ +S   LS E  E+    D ++   D V+          S+ +E+ +  
Sbjct: 31  DNFDCKDVQDMPKS--ILSKE--EI----DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 137 ------------KDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPA 184
                          +++E    + M    IE+     ++ + F+   + R Q Y  L  
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 185 VVYGVIKRTNEIVEELVGQIDATAKS-------RNDVREQMEQRNFEIA-IEVSELEATI 236
            +  +    N +++ ++G    + K+        +   +   + +F+I  + +       
Sbjct: 143 ALLELRPAKNVLIDGVLG----SGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCN--- 193

Query: 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRP--- 293
                      + +E L+K L + D            ++  ++  + +L+ L   +P   
Sbjct: 194 --------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 294 -LLVDQLNYVSKIHDQVDDI--IKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGME 350
            LLV            + ++   K  +  NL      + L     T   + +   L+   
Sbjct: 246 CLLV------------LLNVQNAKAWNAFNLS----CKILL----TTRFKQVTDFLSAAT 285

Query: 351 SIYQLTRIVVEKTRD-LVQKKSREV--KSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDP 407
           +    T I ++     L   + + +  K L+     L +E         S +++ +    
Sbjct: 286 T----THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 408 S----------SKTNELFKVAENGLREAGIDFK--FSKLL---SDGKVPVSDDKA----- 447
           +           K   + + + N L  A  +++  F +L        +P           
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPT---ILLSLIW 396

Query: 448 NAMETEEDEIYNLAGALENIVKASQLEI--VELRHSVEELRAESSLLKEHLEAQAKELSH 505
             +   +  +      +  + K S +E    E   S+  +  E   LK  LE +   L H
Sbjct: 397 FDVIKSDVMVV-----VNKLHKYSLVEKQPKESTISIPSIYLE---LKVKLENEY-AL-H 446

Query: 506 RMKRIEELEEKERIANESVS------YMFNWQYI 533
           R   ++     +   ++ +       Y ++  +I
Sbjct: 447 R-SIVDHYNIPKTFDSDDLIPPYLDQYFYS--HI 477

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.0 bits (186), Expect = 1e-14
 Identities = 94/604 (15%), Positives = 199/604 (32%), Gaps = 151/604 (25%)

Query: 7   DAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKAL 66
           DA + + + + DVQ       S E    ++   +                     RL   
Sbjct: 27  DAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTL---------------RL--- 67

Query: 67  AHESIKRRDESTRQR--DEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD----EVT 120
              ++  + E   Q+  +E LR   + L S   + TE  + ++     ++Q D    +  
Sbjct: 68  -FWTLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 121 KARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFS--AGGLPRSQK 178
                + S+L    K +  L  E+  + ++L+ G+   SGK       +  A  +  S K
Sbjct: 125 VFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGV-LGSGK-------TWVALDVCLSYK 175

Query: 179 Y-TGLPAVVY----GVIKRTNEIVE---ELVGQIDATAKSRND---------------VR 215
               +   ++            ++E   +L+ QID    SR+D               +R
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 216 EQMEQRNFEIAI----EVSE---LEA------TISGLRE-EVAKKSSFIENLEKSLIEKD 261
             ++ + +E  +     V       A       +   R  +V    S       SL    
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 262 EKVAEIESQGLELRQLVNEYEDKLKN-LESHRPLLV-----------DQLNYVSKI-HDQ 308
             +   E + L L + ++     L   + +  P  +              +    +  D+
Sbjct: 296 MTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 309 VDDIIKI-VDDGNLDQSGLSE-----SLFLPQETDMEENIRASLAGMESIYQLTRIVVEK 362
           +  II+  ++   L+ +   +     S+F P    +   + + +   + I     +VV K
Sbjct: 355 LTTIIESSLN--VLEPAEYRKMFDRLSVF-PPSAHIPTILLSLIWF-DVIKSDVMVVVNK 410

Query: 363 --TRDLVQKKSREVK-SLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAE 419
                LV+K+ +E   S+     +L  + E+  +L RS +    ++  +  +++L     
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYL 469

Query: 420 NG---------LREAG------------IDFKF--SKLLSDG-----KVPVSD------- 444
           +          L+               +DF+F   K+  D         + +       
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 445 ------DKANAMETEEDEIYN-LAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLE 497
                 D     E   + I + L    EN++ +   +++ +      L AE   + E   
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI-----ALMAEDEAIFEEAH 584

Query: 498 AQAK 501
            Q +
Sbjct: 585 KQVQ 588

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 39/275 (14%), Positives = 97/275 (35%), Gaps = 13/275 (4%)

Query: 29   VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREK 88
             E    +  +L  E +    AE     L+ K   L+ + HE   R +E   +  +   EK
Sbjct: 891  CEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950

Query: 89   -------EEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLR 141
                    ++    ++      ++ + K     ++ ++         Q +++TK +  L 
Sbjct: 951  KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010

Query: 142  SEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEE-- 199
              + +    L    EK            +       +          + K   ++  E  
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070

Query: 200  -LVGQIDATAKSRNDVREQMEQRNFEIAIEVSELE---ATISGLREEVAKKSSFIENLEK 255
             L  QI        +++ Q+ ++  E+   ++ LE   +  +   +++ +  S I +L++
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130

Query: 256  SLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLES 290
             L  +     + E Q  +L + +   + +L++   
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 45/339 (13%), Positives = 126/339 (37%), Gaps = 49/339 (14%)

Query: 190  IKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSF 249
            +++ +  + E    +    ++  ++  + E+    +A +  ELE  +  +          
Sbjct: 883  LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR------- 935

Query: 250  IENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL-NYVSKIHDQ 308
            IE  E+   +   +  +++ Q L+L + + E E   + L+  +     ++      I   
Sbjct: 936  IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995

Query: 309  VDDIIKIVDDGNLDQSGLSESL-FLPQETDMEENIRASLAGMESIYQLTRIVVE---KTR 364
             D   K+  +  L +  +S+    L +E +  +N+       ES+     + ++   K+R
Sbjct: 996  EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055

Query: 365  DLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLRE 424
              ++K  R+++  +  + + + E +  ++ L++ L+K+                      
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK---------------------- 1093

Query: 425  AGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI---VKASQLEIVELRHS 481
               + +    L+       +D+ +       +I  L   + ++   +++ +    +    
Sbjct: 1094 ---EEELQAALAR-----LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145

Query: 482  VEELRAESSLLKEHLEAQAKELSH----RMKRIEELEEK 516
              +L  E   LK  LE      +     R    ++ ++K
Sbjct: 1146 KRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 49/319 (15%), Positives = 123/319 (38%), Gaps = 39/319 (12%)

Query: 209  KSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268
            +++++  ++ ++R  +   E+ ELE   + L EE       ++   +   E +E    + 
Sbjct: 860  QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919

Query: 269  SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSE 328
            ++  EL ++++E E +++  E     L  +     K+  Q+ D+ + +++    +  L  
Sbjct: 920  AKKQELEEILHEMEARIEEEEERSQQLQAEK---KKMQQQMLDLEEQLEEEEAARQKLQL 976

Query: 329  SLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQL---V 385
                 ++   +  I+     +  +            D   K ++E K L E V  L   +
Sbjct: 977  -----EKVTADGKIKKMEDDILIM-----------EDQNNKLTKERKLLEERVSDLTTNL 1020

Query: 386  KEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDD 445
             E+E     L    +K       S  +EL    +    ++  + +  K   +G+     +
Sbjct: 1021 AEEEEKAKNLTKLKNKH-----ESMISELEVRLKK-EEKSRQELEKIKRKLEGESSDLHE 1074

Query: 446  KANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSH 505
            +   ++ +  E       L+  +   + E+      +E+  ++    K +   + +EL  
Sbjct: 1075 QIAELQAQIAE-------LKAQLAKKEEELQAALARLEDETSQ----KNNALKKIRELES 1123

Query: 506  RMKRIEELEEKERIANESV 524
             +  ++E  E E+ A    
Sbjct: 1124 HISDLQEDLESEKAARNKA 1142

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 42/364 (11%), Positives = 117/364 (32%), Gaps = 38/364 (10%)

Query: 36   LAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSN 95
            L ++ R+ +  +A +       E+  + +A   E  ++  +   +++    + +      
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908

Query: 96   DKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGI 155
             +       +   K E+ + L E+    +    +  ++   K  ++ ++ +    L    
Sbjct: 909  AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE-- 966

Query: 156  EKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVR 215
                                               +   + ++      D   K   D  
Sbjct: 967  ----------------------------------EEAARQKLQLEKVTADGKIKKMEDDI 992

Query: 216  EQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELR 275
              ME +N ++  E   LE  +S L   +A++    +NL K   + +  ++E+E +  +  
Sbjct: 993  LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052

Query: 276  QLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDD--GNLDQSGLSESLFLP 333
            +   E E   + LE     L +Q+  +     ++   +   ++           E+    
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112

Query: 334  QETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVS 393
                    + + ++ ++   +  +    K     +  S E+++L   +   +        
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172

Query: 394  LLRS 397
            L  S
Sbjct: 1173 LRGS 1176

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 32/255 (12%), Positives = 81/255 (31%), Gaps = 27/255 (10%)

Query: 37   AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSND 96
              L R +      E+ +  + +      A  H     +     Q        +  L+   
Sbjct: 851  GYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK 910

Query: 97   KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIE 156
              +  +         +  ++ ++ +  D    +   + +  + L          L + +E
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 157  KISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVRE 216
            ++       KN +                    +    E + +L  ++  T   +  + E
Sbjct: 971  RLRMSEEEAKNATN------------------RVLSLQEEIAKLRKELHQTQTEKKTIEE 1012

Query: 217  QMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGL--EL 274
              ++   E    VSEL+   + L+ E        E L + + ++ +++ E   + L  E 
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTE-------KEELNRRIHDQAKEITETMEKKLVEET 1065

Query: 275  RQLVNEYEDKLKNLE 289
            +QL  +  D+    +
Sbjct: 1066 KQLELDLNDERLRYQ 1080

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	534
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.02
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.74
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	89.28
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	86.67
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.41

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.02  E-value=0.06  Score=60.95  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhh
Q 009446           31 RFREVLAELNRERQAREAAENSATELSEKFNRL   63 (534)
Q Consensus        31 ~~~~l~ael~~er~~r~aae~s~~e~~~~f~rl   63 (534)
                      .+.++-.+|..-+..-...+....+++.....|
T Consensus       858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L  890 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL  890 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333444433333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.74  E-value=0.03  Score=63.28  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhH
Q 009446           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLK   64 (534)
Q Consensus        29 ~~~~~~l~ael~~er~~r~aae~s~~e~~~~f~rlk   64 (534)
                      .+++.++-+.|.+....+..++.....++...+.++
T Consensus       863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~  898 (1184)
T 1i84_S          863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ  898 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555554444444443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=89.28  E-value=10  Score=32.79  Aligned_cols=6  Identities=17%  Similarity=0.440  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 009446           56 LSEKFN   61 (534)
Q Consensus        56 ~~~~f~   61 (534)
                      +...+.
T Consensus        39 ~~~~~~   44 (284)
T 1c1g_A           39 LEDELV   44 (284)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=86.67  E-value=6.7  Score=37.18  Aligned_cols=55  Identities=4%  Similarity=0.092  Sum_probs=39.5

Q ss_pred             eeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhch
Q 009446          227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL  288 (534)
Q Consensus       227 IEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E~klk~~  288 (534)
                      -||..|++.+.+++..+......++++.+.....+..|.       .++.++..+..++.+.
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~-------~~~~ri~~~~~~l~~v   86 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ-------DTNAKIASIQKKMSEI   86 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcc
Confidence            567788888888888887777777777666666555555       7777777777776443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.41  E-value=9.3  Score=38.83  Aligned_cols=116  Identities=8%  Similarity=0.015  Sum_probs=50.3

Q ss_pred             hhhhhhhhhhHHHHHhhhhcceeeeeehhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 009446          203 QIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYE  282 (534)
Q Consensus       203 Q~da~~k~rn~aReqmeqrny~iAIEVSqLEa~is~lr~eva~k~s~~e~l~k~~~eke~ki~elerE~~~lKe~V~e~E  282 (534)
                      .++...+.-+..++.++.+--...+.+..+......+.+++.+-......+++........+.+...+...+++.+.+++
T Consensus       471 ~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le  550 (597)
T 3oja_B          471 EQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALE  550 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHH
Confidence            33334444444555555544444444433333333333333333223333333233333333333333334444444444


Q ss_pred             HHhhchhhhchhHHHHhhhHHHHHHHHHHHHHhhcCCCc
Q 009446          283 DKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL  321 (534)
Q Consensus       283 ~klk~~e~~r~lL~dql~~v~~ihd~L~~vi~~vd~~k~  321 (534)
                      ..+   +.++..+.+.-.-...+...+....+.++++-.
T Consensus       551 ~~~---~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~  586 (597)
T 3oja_B          551 KQL---DNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD  586 (597)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            444   334444444445566667777788888877754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00