Citrus Sinensis ID: 009453

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
MDGTVPSAPLDKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPEFTPDNNQNNNTQTPPTSFATPIRSFRSPDVNFVDGSNGDLGSSDGFLDGKKRRTSSYKQKRPKNAQDSDFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGTC
cccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccEEEcccccccccEEcHHHHHHHHHcccccccccEEEEEccccccccEEEEEEEccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHccccEEEEEcccccccccccEEEEEccEEEEccccccccccccEEEEcccccccccccHHHHHHHHHcccccccccEEEEcccccccccccEEEEEcccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEcccccccccccccccccccEEcEEEEEEcccEEEEEcccccccccEEEEEEEEEEcHHHHHHHHcccc
cccccccccccccEEEEcccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccEEcccccEccccccccccEEEEEEEEEEEcccccccccccccccccccccccEEEEEEEccccccccccccEEEEEcccccccccccccHHHHHHcHHHHHHHHHHccccEEEEEEccccccccccEEEEccEEEEEHHHHHccccccEEEEEEEEEccccccccHHHHHHccccccccccccEEcHccccccccccEEEEEcccccccccccEEEEEEEccccccccccccccccccccccccccccEEEEcccccccccccEEEccccEEEccccccccccccccccHHHcccccEEEEEcccccEEEEEcccEccccEEEEcccEEEEHHHHHccccccc
mdgtvpsapldktkvldvkplrslrpvlpsspqappfvcappfgpfppgfspfypfstpeftpdnnqnnntqtpptsfatpirsfrspdvnfvdgsngdlgssdgfldgkkrrtssykqkrpknaqdsdfsvgissferddgnrqVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMRKrlgvvpgveigDIFFFRMEMCLIGlhsqsmagIDYMitrsdldeepvAVSIIssggydddaedsdiliysgqggnanrkgeqaADQKLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESwtekgksgcnifkyklvripgqpGAFALWKLIQRWKdgmsgrvglilpdlssgaeaipialindvddekgpayFTYLTTVKYsksfrltqpsfgcncysacgpgnpncscvqknggdfpytangvlvsrkpliyecgpscpcnrdcknrvsqtGLKVRLDVfktkdrgwglrsldpiragTFICEYAGEVVDkfkarqdgegtc
mdgtvpsapldktkvldvkplrSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPEFTPDNNQNNNTQTPPTSFATPIRSFRSPDVNfvdgsngdlgssdgfldgkkrrtssykqkrpknaqdsdfsvgissferddgnrqvvNNVLMRFDALRRRISqiedaketstglirradlkasnilmskgvrtnmrkrlgvvpGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSggydddaeDSDILIYsgqggnanrkgeqaadqklergnlalerslrrasevrvirgmkdainqsskvyvYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIAlindvddekgPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGpscpcnrdcknrvsqtglkvrldvfktkdrgwglrsldpiraGTFICEYAGEVVDKfkarqdgegtc
MDGTVPSAPLDKTKVLDVKPLRSLRPVLPSSPQAppfvcappfgpfppgfspfypfstpEFtpdnnqnnntqtpptSFATPIRSFRSPDVNFVdgsngdlgssdgfldgKKRRTSSYKQKRPKNAQDSDFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGTC
************************************FVCAPPFGPF**GFSPFY******************************************************************************************QVVNNVLMRFDALRRRISQI*******TGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGY********ILIY***********************************VRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKF**********
***************LDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGF***************************************************************************************************VLMRFDALRR*************************ILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGG*****************NLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKAR*******
********PLDKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPEFTPDNNQNNNTQTPPTSFATPIRSFRSPDVNFVDGSNGDLGSSDGFLDGKKRR***************DFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQG*************KLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA********
**********DKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSP****************************************************************************************DGNRQVVNNVLMRFDALRRRISQIEDAKET***LIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNAN**GEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQ******
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MDGTVPSAPLDKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPEFTPDNNQNNNTQTPPTSFATPIRSFRSPDVNFVDGSNGDLGSSDGFLDGKKRRTSSYKQKRPKNAQDSDFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKARQDGEGTC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query534 2.2.26 [Sep-21-2011]
Q9C5P4 669 Histone-lysine N-methyltr yes no 0.960 0.766 0.565 1e-178
Q9FF80 670 Histone-lysine N-methyltr no no 0.945 0.753 0.596 1e-174
Q93YF5 704 Histone-lysine N-methyltr N/A no 0.958 0.727 0.520 1e-160
Q9C5P1 693 Histone-lysine N-methyltr no no 0.923 0.711 0.390 3e-98
Q9C5P0 755 Histone-lysine N-methyltr no no 0.764 0.540 0.416 8e-91
Q9T0G7 650 Probable histone-lysine N no no 0.707 0.581 0.437 1e-85
O22781 651 Histone-lysine N-methyltr no no 0.730 0.599 0.416 1e-84
O82175794 Histone-lysine N-methyltr no no 0.705 0.474 0.454 7e-83
Q8VZ17 790 Histone-lysine N-methyltr no no 0.702 0.474 0.439 2e-80
Q8GZB6 624 Histone-lysine N-methyltr no no 0.634 0.543 0.374 6e-63
>sp|Q9C5P4|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 OS=Arabidopsis thaliana GN=SUVH3 PE=2 SV=2 Back     alignment and function desciption
 Score =  624 bits (1608), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 308/545 (56%), Positives = 400/545 (73%), Gaps = 32/545 (5%)

Query: 4   TVPSA-PLDKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPE-- 60
           TVP+    DK+ VLD+KPLRSL+PV P+  Q PPFV  PPFGP    +S F+PF   +  
Sbjct: 9   TVPNPNHYDKSIVLDIKPLRSLKPVFPNGNQGPPFVGCPPFGPSSSEYSSFFPFGAQQPT 68

Query: 61  -FTPDNNQNNNTQTPPTSFATPIRSFRSPDVNFVDGSNGDLGSSDGFLDGKKRRTSSYKQ 119
             TPD NQ  NT  P  SF  P+RS+R+P     +G +   G+  G   G+ + T+S K+
Sbjct: 69  HDTPDLNQTQNTPIP--SFVPPLRSYRTPTK--TNGPSSSSGTKRGV--GRPKGTTSVKK 122

Query: 120 KRPKNAQD-------------SDFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIED 166
           K  K   +             SDF  GIS+ ER+DGN  +V++VLMRFDA+RRR+SQ+E 
Sbjct: 123 KEKKTVANEPNLDVQVVKKFSSDFDSGISAAEREDGNAYLVSSVLMRFDAVRRRLSQVE- 181

Query: 167 AKETSTGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQS 226
                    + A  KA+  LMS GVRTNM+KR+G VPG+E+GDIFF R+EMCL+GLH Q+
Sbjct: 182 -------FTKSATSKAAGTLMSNGVRTNMKKRVGTVPGIEVGDIFFSRIEMCLVGLHMQT 234

Query: 227 MAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAADQKLE 286
           MAGIDY+I+++  DEE +A SI+SSG Y+ +A+D + LIYSGQGGNA+ K  QA+DQKLE
Sbjct: 235 MAGIDYIISKAGSDEESLATSIVSSGRYEGEAQDPESLIYSGQGGNAD-KNRQASDQKLE 293

Query: 287 RGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKL 346
           RGNLALE SLR+ + VRV+RG +DA +++ K+Y+YDGLY++ ESW EKGKSGCN FKYKL
Sbjct: 294 RGNLALENSLRKGNGVRVVRGEEDAASKTGKIYIYDGLYSISESWVEKGKSGCNTFKYKL 353

Query: 347 VRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTY 406
           VR PGQP AF  WK +Q+WK+G++ R GLILPDL+SGAE+ P++L+NDVD++KGPAYFTY
Sbjct: 354 VRQPGQPPAFGFWKSVQKWKEGLTTRPGLILPDLTSGAESKPVSLVNDVDEDKGPAYFTY 413

Query: 407 LTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYEC 466
            +++KYS++F+LTQP  GC+C  +C PGN NCSC++KN GD PY    +LVSR+P+IYEC
Sbjct: 414 TSSLKYSETFKLTQPVIGCSCSGSCSPGNHNCSCIRKNDGDLPYLNGVILVSRRPVIYEC 473

Query: 467 GPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA 526
           GP+CPC+  CKNRV QTGLK RL+VFKT++RGWGLRS D +RAG+FICEYAGEV D    
Sbjct: 474 GPTCPCHASCKNRVIQTGLKSRLEVFKTRNRGWGLRSWDSLRAGSFICEYAGEVKDNGNL 533

Query: 527 RQDGE 531
           R + E
Sbjct: 534 RGNQE 538
Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q9FF80|SUVH1_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Arabidopsis thaliana GN=SUVH1 PE=2 SV=1 Back     alignment and function description
>sp|Q93YF5|SUVH1_TOBAC Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C5P1|SUVH7_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH7 OS=Arabidopsis thaliana GN=SUVH7 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5P0|SUVH8_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8 OS=Arabidopsis thaliana GN=SUVH8 PE=3 SV=1 Back     alignment and function description
>sp|Q9T0G7|SUVH9_ARATH Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=2 SV=1 Back     alignment and function description
>sp|O22781|SUVH2_ARATH Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 OS=Arabidopsis thaliana GN=SUVH2 PE=1 SV=1 Back     alignment and function description
>sp|O82175|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1 Back     alignment and function description
>sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2 Back     alignment and function description
>sp|Q8GZB6|SUVH4_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query534
255569225 681 histone-lysine n-methyltransferase, suvh 0.973 0.763 0.686 0.0
224146413 669 SET domain protein [Populus trichocarpa] 0.955 0.762 0.680 0.0
224073090 653 SET domain protein [Populus trichocarpa] 0.943 0.771 0.679 0.0
225465387 716 PREDICTED: histone-lysine N-methyltransf 0.977 0.729 0.656 0.0
225440250 737 PREDICTED: histone-lysine N-methyltransf 0.973 0.705 0.534 0.0
147844783 666 hypothetical protein VITISV_043758 [Viti 0.964 0.773 0.539 1e-180
356508242 667 PREDICTED: histone-lysine N-methyltransf 0.956 0.766 0.572 1e-177
18410265 669 histone-lysine N-methyltransferase, H3 l 0.960 0.766 0.565 1e-176
224057196512 SET domain protein [Populus trichocarpa] 0.711 0.742 0.758 1e-175
13517747 669 SUVH3 [Arabidopsis thaliana] 0.960 0.766 0.565 1e-175
>gi|255569225|ref|XP_002525581.1| histone-lysine n-methyltransferase, suvh, putative [Ricinus communis] gi|223535160|gb|EEF36840.1| histone-lysine n-methyltransferase, suvh, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/546 (68%), Positives = 453/546 (82%), Gaps = 26/546 (4%)

Query: 6   PSAPLDKTKVLDVKPLRSLRPVLPSSPQAPPFVCAPPFGPFPPGFSPFYPFSTPEFT--- 62
           PS+  DK++VLDVKPLR+L PV P+SPQ PPF+CAPP GPFP GFSPFYPF+ P+     
Sbjct: 12  PSSTFDKSRVLDVKPLRTLVPVFPNSPQTPPFICAPPNGPFPSGFSPFYPFNGPQLAATT 71

Query: 63  -----PDNNQNNNTQTPPTSFATPIRSFRSPDVNF-VDGSNGDLGSSDGFLD---GKKRR 113
                PD NQ   T TP      P+RSFR+P  N  V     + G+SDG      G+ R 
Sbjct: 72  TASTPPDLNQE--THTP-----APLRSFRAPQSNGGVSRGGNEEGTSDGRPKRPVGRPRN 124

Query: 114 TSSYKQKRPK-------NAQDSDFSVGISSFERDDGNRQVVNNVLMRFDALRRRISQIED 166
           ++S  QKR K       +  D++F  GI+  +R+DG+R VV N++MRFDALRRR+SQ+ED
Sbjct: 125 STSSSQKRAKKDLDFTLSVVDNNFVAGITPSQREDGDRGVVINIMMRFDALRRRLSQLED 184

Query: 167 AKETSTGLIRRADLKASNILMSKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQS 226
           +KE  TGLI+RADLKA N+LMSKGVR+NMRKR+G VPGVEIGDIFFFRMEMC+IGLHSQS
Sbjct: 185 SKEAPTGLIKRADLKAGNVLMSKGVRSNMRKRIGAVPGVEIGDIFFFRMEMCVIGLHSQS 244

Query: 227 MAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANRKGEQAADQKLE 286
           MAGIDYMI R D+DE+P+AVSI+SSGGYDD+AED D+LIYSGQGGNAN   ++AADQKLE
Sbjct: 245 MAGIDYMIVRGDIDEDPLAVSIVSSGGYDDEAEDRDVLIYSGQGGNANSNKKEAADQKLE 304

Query: 287 RGNLALERSLRRASEVRVIRGMKDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKL 346
           RGNLALERSL RA+EVRVIRGMKD ++Q++KVY+YDGLY +QESW +KGKSGCNIFKYKL
Sbjct: 305 RGNLALERSLHRANEVRVIRGMKDTLSQAAKVYMYDGLYRIQESWVDKGKSGCNIFKYKL 364

Query: 347 VRIPGQPGAFALWKLIQRWKDGMSGRVGLILPDLSSGAEAIPIALINDVDDEKGPAYFTY 406
           VR+PGQPGAF++WK IQ+WK+G+S RVGLILPDL+SGAE +P++L+NDVD+EKGPAYFTY
Sbjct: 365 VRVPGQPGAFSVWKSIQQWKEGISTRVGLILPDLTSGAETLPVSLVNDVDEEKGPAYFTY 424

Query: 407 LTTVKYSKSFRLTQPSFGCNCYSACGPGNPNCSCVQKNGGDFPYTANGVLVSRKPLIYEC 466
             TVKY KSF+LT+PS+GCNC +AC PG+ +CSC++KNGGDFPYTANGVLVSR+PL++EC
Sbjct: 425 FPTVKYIKSFKLTEPSYGCNCRNACSPGDLDCSCIRKNGGDFPYTANGVLVSRRPLVHEC 484

Query: 467 GPSCPCNRDCKNRVSQTGLKVRLDVFKTKDRGWGLRSLDPIRAGTFICEYAGEVVDKFKA 526
           GP+CPC  +CKNRVSQTGLKVRL+VFKTKDRGWGLRS DPIR+GTFICEYAGEV++K K 
Sbjct: 485 GPTCPCIPNCKNRVSQTGLKVRLEVFKTKDRGWGLRSWDPIRSGTFICEYAGEVIEKVKG 544

Query: 527 RQDGEG 532
           +QDGEG
Sbjct: 545 KQDGEG 550

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224146413|ref|XP_002336307.1| SET domain protein [Populus trichocarpa] gi|222834460|gb|EEE72937.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224073090|ref|XP_002303967.1| SET domain protein [Populus trichocarpa] gi|222841399|gb|EEE78946.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225465387|ref|XP_002273935.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440250|ref|XP_002278728.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147844783|emb|CAN79045.1| hypothetical protein VITISV_043758 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356508242|ref|XP_003522868.1| PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1-like [Glycine max] Back     alignment and taxonomy information
>gi|18410265|ref|NP_565056.1| histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Arabidopsis thaliana] gi|30580525|sp|Q9C5P4.2|SUVH3_ARATH RecName: Full=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3; AltName: Full=Histone H3-K9 methyltransferase 3; Short=H3-K9-HMTase 3; AltName: Full=Protein SET DOMAIN GROUP 19; AltName: Full=Suppressor of variegation 3-9 homolog protein 3; Short=Su(var)3-9 homolog protein 3 gi|5903099|gb|AAD55657.1|AC008017_30 Unknown protein [Arabidopsis thaliana] gi|20466308|gb|AAM20471.1| unknown protein [Arabidopsis thaliana] gi|25083988|gb|AAN72148.1| unknown protein [Arabidopsis thaliana] gi|332197293|gb|AEE35414.1| histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224057196|ref|XP_002299167.1| SET domain protein [Populus trichocarpa] gi|222846425|gb|EEE83972.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|13517747|gb|AAK28968.1|AF344446_1 SUVH3 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query534
TAIR|locus:2175289 670 SUVH1 "SU(VAR)3-9 homolog 1" [ 0.822 0.655 0.615 8.6e-160
TAIR|locus:2032592 669 SUVH3 "SU(VAR)3-9 homolog 3" [ 0.827 0.660 0.566 1.1e-150
TAIR|locus:2030953 693 SUVH7 "SU(VAR)3-9 homolog 7" [ 0.762 0.587 0.437 1.1e-89
TAIR|locus:2047266 755 SDG21 "SET domain group 21" [A 0.735 0.520 0.434 2.1e-84
TAIR|locus:2063384794 SUVH5 "SU(VAR)3-9 homolog 5" [ 0.704 0.473 0.455 1.2e-83
TAIR|locus:2140827 650 SUVH9 "SU(VAR)3-9 homolog 9" [ 0.758 0.623 0.426 3.9e-83
TAIR|locus:2051083 651 SUVH2 "SU(VAR)3-9 homolog 2" [ 0.745 0.611 0.418 4.1e-81
TAIR|locus:2065988 790 SUVH6 "SU(VAR)3-9 homolog 6" [ 0.765 0.517 0.420 7.6e-80
TAIR|locus:2159133 624 SUVH4 "SU(VAR)3-9 homolog 4" [ 0.644 0.551 0.382 2.1e-61
TAIR|locus:2064676312 SDG11 "SET domain protein 11" 0.393 0.673 0.449 1.9e-42
TAIR|locus:2175289 SUVH1 "SU(VAR)3-9 homolog 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1483 (527.1 bits), Expect = 8.6e-160, Sum P(2) = 8.6e-160
 Identities = 278/452 (61%), Positives = 353/452 (78%)

Query:    77 SFATPIRSFRSPDVNFVXXXXXXXXXXXXXXXXKKRRTSSYKQKRPKNAQDSDFSVGISS 136
             S  TP+RSFRSPDV+                  KKR  S     RP+N    +F  GI+ 
Sbjct:    98 SLVTPLRSFRSPDVS--NGNAELEGSTVKRRIPKKRPIS-----RPENM---NFESGINV 147

Query:   137 FERDDGNRQVVNNVLMRFDALRRRISQIEDAKETSTGLIRRADLKASNILMSKGVRTNMR 196
              +R++GNR++V +VLMRFDALRRR +Q+EDAKE  +G+I+R DLK+ +  M +GVRTN +
Sbjct:   148 ADRENGNRELVLSVLMRFDALRRRFAQLEDAKEAVSGIIKRPDLKSGSTCMGRGVRTNTK 207

Query:   197 KRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDD 256
             KR G+VPGVEIGD+FFFR EMCL+GLHS SMAGIDY++ + + +EEP+A SI+SSG YD+
Sbjct:   208 KRPGIVPGVEIGDVFFFRFEMCLVGLHSPSMAGIDYLVVKGETEEEPIATSIVSSGYYDN 267

Query:   257 DAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSS 316
             D  + D+LIY+GQGGNA+ K +Q++DQKLERGNLALE+SLRR S VRVIRG+K+A + ++
Sbjct:   268 DEGNPDVLIYTGQGGNAD-KDKQSSDQKLERGNLALEKSLRRDSAVRVIRGLKEA-SHNA 325

Query:   317 KVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQPGAFALWKLIQRWKDGMSGRVGLI 376
             K+Y+YDGLY ++ESW EKGKSG N FKYKLVR PGQP AFA W  IQ+WK G+  R GLI
Sbjct:   326 KIYIYDGLYEIKESWVEKGKSGHNTFKYKLVRAPGQPPAFASWTAIQKWKTGVPSRQGLI 385

Query:   377 LPDLSSGAEAIPIALINDVDDEKGPAYFTYLTTVKYSKSFRLTQPSFGCNCYSACGPGNP 436
             LPD++SG E+IP++L+N+VD + GPAYFTY TTVKYS+SF+L QPSFGC+C + C PGN 
Sbjct:   386 LPDMTSGVESIPVSLVNEVDTDNGPAYFTYSTTVKYSESFKLMQPSFGCDCANLCKPGNL 445

Query:   437 NCSCVQKNGGDFPYTANGVLVSRKPLIYECGPSCPCNRDCKNRVSQTGLKVRLDVFKTKD 496
             +C C++KNGGDFPYT NG+LVSRKP+IYEC PSCPC+  CKN+V+Q G+KVRL+VFKT +
Sbjct:   446 DCHCIRKNGGDFPYTGNGILVSRKPMIYECSPSCPCST-CKNKVTQMGVKVRLEVFKTAN 504

Query:   497 RGWGLRSLDPIRAGTFICEYAGEVVDKFKARQ 528
             RGWGLRS D IRAG+FIC Y GE  DK K +Q
Sbjct:   505 RGWGLRSWDAIRAGSFICIYVGEAKDKSKVQQ 536
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0018024 "histone-lysine N-methyltransferase activity" evidence=IEA
GO:0034968 "histone lysine methylation" evidence=IEA
GO:0042054 "histone methyltransferase activity" evidence=ISS
GO:0042393 "histone binding" evidence=IEA
GO:0040029 "regulation of gene expression, epigenetic" evidence=TAS
TAIR|locus:2032592 SUVH3 "SU(VAR)3-9 homolog 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030953 SUVH7 "SU(VAR)3-9 homolog 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047266 SDG21 "SET domain group 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063384 SUVH5 "SU(VAR)3-9 homolog 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140827 SUVH9 "SU(VAR)3-9 homolog 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051083 SUVH2 "SU(VAR)3-9 homolog 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065988 SUVH6 "SU(VAR)3-9 homolog 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159133 SUVH4 "SU(VAR)3-9 homolog 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064676 SDG11 "SET domain protein 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C5P4SUVH3_ARATH2, ., 1, ., 1, ., 4, 30.56510.96060.7668yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.914
3rd Layer2.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
pfam02182154 pfam02182, YDG_SRA, YDG/SRA domain 6e-78
smart00466155 smart00466, SRA, SET and RING finger associated do 2e-74
pfam05033103 pfam05033, Pre-SET, Pre-SET motif 5e-34
smart0046898 smart00468, PreSET, N-terminal to some SET domains 1e-24
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 5e-11
pfam00856113 pfam00856, SET, SET domain 4e-06
>gnl|CDD|216920 pfam02182, YDG_SRA, YDG/SRA domain Back     alignment and domain information 
 Score =  241 bits (617), Expect = 6e-78
 Identities = 87/158 (55%), Positives = 114/158 (72%), Gaps = 6/158 (3%)

Query: 197 KRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDD 256
           KR+G VPGVE+GDIFF+R+E+C++GLH    AGID M      +   +A SI+SSGGY+D
Sbjct: 1   KRIGHVPGVEVGDIFFYRVELCVVGLHRPHQAGIDGM----KSEGGTIATSIVSSGGYED 56

Query: 257 DAEDSDILIYSGQGGNANRKGEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQS- 315
           D ++ D+L+Y+GQGGN     +Q+ DQKLERGNLAL  S R+ + VRVIRG K   + + 
Sbjct: 57  DEDNGDVLVYTGQGGNDLSGNKQSEDQKLERGNLALANSCRKGNPVRVIRGEKGPSSHAP 116

Query: 316 -SKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQ 352
              +Y YDGLY V++ W EKGKSG  +FK+KLVRIPGQ
Sbjct: 117 KGGIYRYDGLYRVEKYWREKGKSGFKVFKFKLVRIPGQ 154

The function of this domain is unknown, it contains a conserved motif YDG after which it has been named. Length = 154
>gnl|CDD|197742 smart00466, SRA, SET and RING finger associated domain Back     alignment and domain information
>gnl|CDD|218393 pfam05033, Pre-SET, Pre-SET motif Back     alignment and domain information
>gnl|CDD|128744 smart00468, PreSET, N-terminal to some SET domains Back     alignment and domain information
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 534
smart00466155 SRA SET and RING finger associated domain. Domain 100.0
PF02182155 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This 100.0
KOG1082 364 consensus Histone H3 (Lys9) methyltransferase SUV3 99.98
PF05033103 Pre-SET: Pre-SET motif; InterPro: IPR007728 This r 99.86
smart0046898 PreSET N-terminal to some SET domains. A Cys-rich 99.83
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 99.82
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 99.65
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.14
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 98.95
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 98.3
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 97.52
smart0057051 AWS associated with SET domains. subdomain of PRES 96.4
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 96.17
KOG1085392 consensus Predicted methyltransferase (contains a 96.13
COG2940 480 Proteins containing SET domain [General function p 94.79
COG3440301 Predicted restriction endonuclease [Defense mechan 94.26
>smart00466 SRA SET and RING finger associated domain Back     alignment and domain information 
Probab=100.00  E-value=9.8e-60  Score=439.31  Aligned_cols=153  Identities=58%  Similarity=1.001  Sum_probs=145.6

Q ss_pred             CCccccCCCCcCCceechHhHHHHhcccCcccCCcceeeccCCCCCCCeEEEEEecCCCCCCCCCCCeEEEEccCCCCCC
Q 009453          196 RKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNANR  275 (534)
Q Consensus       196 ~k~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GId~~~~~~~~~~~~~A~SIV~SGgY~dd~D~gd~liYtG~GG~~~~  275 (534)
                      .|+||+||||+|||+|+||+||+++|||+++|+|||+++.+   +++++|+|||+||+|+||+|+||+|+|||+||++. 
T Consensus         2 ~~~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GI~~~~~~---~~~~~A~SIV~SggYedd~D~gd~liYtG~gg~~~-   77 (155)
T smart00466        2 KHIFGPVPGVEVGDIFFFRVELCLVGLHRPTQAGIDGLTAD---EGEPGATSVVSSGGYEDDTDDGDVLIYTGQGGRDM-   77 (155)
T ss_pred             CceEeCCCCccCCCEEcchhHhhhhcccCcccCCccccccc---CCCccEEEEEECCCccCcccCCCEEEEEccCCccC-
Confidence            58999999999999999999999999999999999999863   56799999999999999999999999999999864 


Q ss_pred             CCCcccCcccchhhHHHHHHHHhCCccEEEeccc-cccCCCCceeeeeCeeeeeeeEEecCCCcceeeeEeeeecCCC
Q 009453          276 KGEQAADQKLERGNLALERSLRRASEVRVIRGMK-DAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQ  352 (534)
Q Consensus       276 ~~~~~~DQkl~~gNlAL~~S~~~~~PVRVIRg~~-~~~~~~~k~YrYDGLY~V~~~w~e~g~~G~~v~kfkL~RlpgQ  352 (534)
                      +.+|..||+|++||+||++|+++++|||||||++ ...+.|.++|||||||+|+++|.|+|++|+.||||+|+|+|||
T Consensus        78 ~~~~~~dQkl~~gNlAL~~S~~~~~PVRViRg~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kfkL~R~~gQ  155 (155)
T smart00466       78 THGQPEDQKLERGNLALEASCRKGIPVRVVRGMKGYSKYAPGKGYIYDGLYRIVDYWREVGKSGFLVFKFKLVRIPGQ  155 (155)
T ss_pred             CCCCccccEecchhHHHHHHHhcCCceEEEccccccCCCCCCCeEEECcEEEEEEEEEecCCCCcEEEEEEEEeCCCC
Confidence            6789999999999999999999999999999999 5567899999999999999999999999999999999999998

Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Domain in SET domain containing proteins and in Deinococcus radiodurans DRA1533.
>PF02182 SAD_SRA: SAD/SRA domain; InterPro: IPR003105 This domain has been termed SRA-YDG, for SET and Ring finger Associated, and because of the conserved YDG motif within the domain Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain Back     alignment and domain information
>smart00468 PreSET N-terminal to some SET domains Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>smart00570 AWS associated with SET domains Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>COG3440 Predicted restriction endonuclease [Defense mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
3q0c_X167 Crystal Structure Of Suvh5 Sra-Fully Methylated Cg 3e-41
3q0b_X167 Crystal Structure Of Suvh5 Sra- Fully Methylated Cg 2e-39
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 1e-22
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 1e-22
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 1e-22
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 2e-22
3k5k_A 283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 3e-22
2o8j_A 281 Human Euchromatic Histone Methyltransferase 2 Lengt 3e-22
1mvh_A 299 Structure Of The Set Domain Histone Lysine Methyltr 4e-20
2pb7_A239 Crystal Structure Of The Sra Domain Of The Human Uh 2e-17
3clz_A212 The Set And Ring Associated (Sra) Domain Of Uhrf1 B 2e-17
3dwh_A208 Structural And Functional Analysis Of Sra Domain Le 2e-17
3bi7_A212 Crystal Structure Of The Sra Domain Of E3 Ubiquitin 4e-17
2zo0_B212 Mouse Np95 Sra Domain Dna Specific Complex 1 Length 1e-16
3f8j_B212 Mouse Uhrf1 Sra Domain Bound With Hemi-methylated C 2e-16
2zkd_A210 Crystal Structure Of The Sra Domain Of Mouse Np95 I 2e-16
1ml9_A 302 Structure Of The Neurospora Set Domain Protein Dim- 3e-15
2r3a_A 300 Methyltransferase Domain Of Human Suppressor Of Var 2e-14
3bo5_A 290 Crystal Structure Of Methyltransferase Domain Of Hu 3e-14
3oln_A231 Crystal Structure Of The Sra Domain Of E3 Ubiquitin 8e-10
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 7e-09
3ope_A 222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 2e-08
4fmu_A 278 Crystal Structure Of Methyltransferase Domain Of Hu 2e-07
>pdb|3Q0C|X Chain X, Crystal Structure Of Suvh5 Sra-Fully Methylated Cg Dna Complex In Space Group P6122 Length = 167 Back     alignment and structure 
Iteration: 1

 Score =  166 bits (420), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/160 (55%), Positives = 112/160 (70%), Gaps = 8/160 (5%)
Query: 199 LGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDA 258
           +G VPGVE+GD F +RME+ L+G+H  S +GIDYM    D   E VA SI+SSGGY+D  
Sbjct: 3   IGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYM---KDDGGELVATSIVSSGGYNDVL 59
Query: 259 EDSDILIYSGQGGNANRK--GEQAADQKLERGNLALERSLRRASEVRVIRGMKDAINQSS 316
           ++SD+LIY+GQGGN  +K   E   DQ+L  GNLAL+ S+ + + VRVIRG+K+   QSS
Sbjct: 60  DNSDVLIYTGQGGNVGKKKNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSS 119
Query: 317 ---KVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPGQP 353
              K YVYDGLY V+E W E G  G  +FK+KL RIPGQP
Sbjct: 120 VVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPGQP 159
>pdb|3Q0B|X Chain X, Crystal Structure Of Suvh5 Sra- Fully Methylated Cg Dna Complex In Space Group P42212 Length = 167 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|2PB7|A Chain A, Crystal Structure Of The Sra Domain Of The Human Uhrf1 Protein Length = 239 Back     alignment and structure
>pdb|3CLZ|A Chain A, The Set And Ring Associated (Sra) Domain Of Uhrf1 Bound To Methylated Dna Length = 212 Back     alignment and structure
>pdb|3DWH|A Chain A, Structural And Functional Analysis Of Sra Domain Length = 208 Back     alignment and structure
>pdb|3BI7|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf1 Length = 212 Back     alignment and structure
>pdb|2ZO0|B Chain B, Mouse Np95 Sra Domain Dna Specific Complex 1 Length = 212 Back     alignment and structure
>pdb|3F8J|B Chain B, Mouse Uhrf1 Sra Domain Bound With Hemi-methylated Cpg, Crystal Structure In Space Group C222(1) Length = 212 Back     alignment and structure
>pdb|2ZKD|A Chain A, Crystal Structure Of The Sra Domain Of Mouse Np95 In Complex With Hemi-Methylated Cpg Dna Length = 210 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|3OLN|A Chain A, Crystal Structure Of The Sra Domain Of E3 Ubiquitin-Protein Ligase Uhrf2 Length = 231 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
2pb7_A239 E3 ubiquitin-protein ligase UHRF1; beta barrel, NE 4e-60
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 6e-58
1mvh_A 299 Cryptic LOCI regulator 4; lysine methyltransferase 2e-57
3q0b_X167 Histone-lysine N-methyltransferase, H3 lysine-9 S 4e-57
3oln_A231 E3 ubiquitin-protein ligase UHRF2; DNA-binding, me 2e-55
3fde_A212 E3 ubiquitin-protein ligase UHRF1; SRA domain, bas 4e-52
1ml9_A 302 Histone H3 methyltransferase DIM-5; adoMet-depende 2e-51
2r3a_A 300 Histone-lysine N-methyltransferase SUV39H2; histon 2e-46
3bo5_A 290 Histone-lysine N-methyltransferase setmar; SET dom 3e-46
3h6l_A 278 Histone-lysine N-methyltransferase SETD2; SET doma 3e-38
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 6e-32
3ope_A 222 Probable histone-lysine N-methyltransferase ASH1L; 9e-32
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 2e-18
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 6e-16
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 2e-09
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 1e-05
2f69_A 261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 5e-05
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 2e-04
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12 Length = 239 Back     alignment and structure
 Score =  197 bits (502), Expect = 4e-60
 Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 31/239 (12%)

Query: 188 SKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVS 247
            K          G +PG+ +G ++ FR+++   G+H   +AGI              A S
Sbjct: 3   MKECTIVPSNHYGPIPGIPVGTMWRFRVQVSESGVHRPHVAGIHGR-------SNDGAYS 55

Query: 248 IISSGGYDDDAEDSDILIYSGQGGNA----NRKGEQAADQKLERGNLALE---------- 293
           ++ +GGY+DD +  +   Y+G GG       R  EQ+ DQKL   N AL           
Sbjct: 56  LVLAGGYEDDVDHGNFFTYTGSGGRDLSGNKRTAEQSCDQKLTNTNRALALNCFAPINDQ 115

Query: 294 -----RSLRRASEVRVIRGMKDAINQSS---KVYVYDGLYTVQESWTEKGKSGCNIFKYK 345
                +  R    VRV+R +K   N      +   YDG+Y V + W EKGKSG  +++Y 
Sbjct: 116 EGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYKVVKYWPEKGKSGFLVWRYL 175

Query: 346 LVRIPGQPGAFALWKLIQRWKDGMSGRV--GLILPDLSSGAEAIPIALINDVDDEKGPA 402
           L R   +PG +      +  K G++ +   G +    +   E        +   E G A
Sbjct: 176 LRRDDDEPGPWTKEGKDRIKKLGLTMQYPEGYLEALANREREKENSKREEEEQQEGGFA 234
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X* Length = 167 Back     alignment and structure
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} Length = 231 Back     alignment and structure
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A* Length = 212 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query534
3q0b_X167 Histone-lysine N-methyltransferase, H3 lysine-9 S 100.0
3fde_A212 E3 ubiquitin-protein ligase UHRF1; SRA domain, bas 100.0
2pb7_A239 E3 ubiquitin-protein ligase UHRF1; beta barrel, NE 100.0
3oln_A231 E3 ubiquitin-protein ligase UHRF2; DNA-binding, me 100.0
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 100.0
1mvh_A 299 Cryptic LOCI regulator 4; lysine methyltransferase 100.0
1ml9_A 302 Histone H3 methyltransferase DIM-5; adoMet-depende 100.0
3bo5_A 290 Histone-lysine N-methyltransferase setmar; SET dom 99.97
2r3a_A 300 Histone-lysine N-methyltransferase SUV39H2; histon 99.97
3h6l_A 278 Histone-lysine N-methyltransferase SETD2; SET doma 99.85
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 99.82
3ope_A 222 Probable histone-lysine N-methyltransferase ASH1L; 99.81
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 99.12
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.09
2f69_A 261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 98.87
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 98.62
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 98.35
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 98.32
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 97.88
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 97.53
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 97.24
3dal_A196 PR domain zinc finger protein 1; methyltransferase 96.89
3db5_A151 PR domain zinc finger protein 4; methyltransferase 96.87
3ray_A 237 PR domain-containing protein 11; structural genomi 94.71
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 93.85
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X* Back     alignment and structure
Probab=100.00  E-value=9.3e-60  Score=443.45  Aligned_cols=157  Identities=53%  Similarity=0.894  Sum_probs=140.4

Q ss_pred             CccccCCCCcCCceechHhHHHHhcccCcccCCcceeeccCCCCCCCeEEEEEecCCCCCCCCCCCeEEEEccCCCCC--
Q 009453          197 KRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSGQGGNAN--  274 (534)
Q Consensus       197 k~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GId~~~~~~~~~~~~~A~SIV~SGgY~dd~D~gd~liYtG~GG~~~--  274 (534)
                      .+|||||||+|||||++|+||+++|||+++|+||||++.   ++++++|+|||+||+|+||+|+||+|+|||+||++.  
T Consensus         1 ~~~G~vpGv~vGd~f~~R~el~~~G~H~~~~aGI~~~~~---~~~~~gA~SIV~SggY~Dd~D~gd~l~YTG~GG~~~~~   77 (167)
T 3q0b_X            1 QIIGTVPGVEVGDEFQYRMELNLLGIHRPSQSGIDYMKD---DGGELVATSIVSSGGYNDVLDNSDVLIYTGQGGNVGKK   77 (167)
T ss_dssp             CCCSCCTTCCTTCEESCHHHHHHTTSCCCSSCSEEEEEC---SSSCEEEEEEEESSSTTCEECSSSEEEEECSCTTCC--
T ss_pred             CcccCCCCCcCccEecchHHHhHhCcCCCccCCeecccc---cCCCcceEEEEeCCCcccccCCCCEEEEECCCCCcccc
Confidence            379999999999999999999999999999999999984   235789999999999999999999999999999965  


Q ss_pred             CCCCcccCcccchhhHHHHHHHHhCCccEEEecccc---ccCCCCceeeeeCeeeeeeeEEecCCCcceeeeEeeeecCC
Q 009453          275 RKGEQAADQKLERGNLALERSLRRASEVRVIRGMKD---AINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKLVRIPG  351 (534)
Q Consensus       275 ~~~~~~~DQkl~~gNlAL~~S~~~~~PVRVIRg~~~---~~~~~~k~YrYDGLY~V~~~w~e~g~~G~~v~kfkL~Rlpg  351 (534)
                      .+++|+.||+|++||+||++|+++++|||||||++.   ..++|.++|||||||+|++||.|+|++|++||||+|+|+||
T Consensus        78 ~~~~q~~DQ~l~~gN~AL~~S~~~~~pVRViRg~k~~~~~~~~p~~gyrYDGLY~V~~~w~e~g~~G~~v~kf~L~R~~g  157 (167)
T 3q0b_X           78 KNNEPPKDQQLVTGNLALKNSINKKNPVRVIRGIKNTTLQSSVVAKNYVYDGLYLVEEYWEETGSHGKLVFKFKLRRIPG  157 (167)
T ss_dssp             ---CCCCCCCSSHHHHHHHHHHHHCCCEEEEEECC----------CCEEEEEEEEEEEEEEEECTTSCEEEEEEEEECTT
T ss_pred             ccccccccCccchhHHHHHHHHHcCCcEEEEEeecccccCCCCCCccEEECeEEEEeeeEEeeCCCCcEEEEEEEEEcCC
Confidence            377899999999999999999999999999999998   45678999999999999999999999999999999999999


Q ss_pred             CCCcc
Q 009453          352 QPGAF  356 (534)
Q Consensus       352 Qp~~~  356 (534)
                      ||++.
T Consensus       158 Qp~l~  162 (167)
T 3q0b_X          158 QPELP  162 (167)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            99964
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A* Back     alignment and structure
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12 Back     alignment and structure
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 534
d2zkda1209 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase 6e-63
d1ml9a_ 284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 6e-43
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 1e-35
d2f69a2 171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 1e-08
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 1e-04
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209 Back     information, alignment and structure

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: SRA domain-like
domain: E3 ubiquitin-protein ligase UHRF1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  202 bits (516), Expect = 6e-63
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 28/187 (14%)

Query: 188 SKGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVS 247
           +           G +PGV +G ++ FR+++   G+H   +AGI              A S
Sbjct: 8   TTECTIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGR-------SNDGAYS 60

Query: 248 IISSGGYDDDAEDSDILIYSGQGGNAN----RKGEQAADQKLERGNLALERS-------- 295
           ++ +GGY+DD ++ +   Y+G GG       R   Q++DQKL   N AL  +        
Sbjct: 61  LVLAGGYEDDVDNGNYFTYTGSGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEK 120

Query: 296 ------LRRASEVRVIRGM---KDAINQSSKVYVYDGLYTVQESWTEKGKSGCNIFKYKL 346
                  R+   VRV+R M   K +    ++   YDG+Y V + W E+GKSG  +++Y L
Sbjct: 121 GAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKVVKYWPERGKSGFLVWRYLL 180

Query: 347 VRIPGQP 353
            R   +P
Sbjct: 181 RRDDTEP 187
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query534
d2zkda1209 E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musc 100.0
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 99.98
d1ml9a_ 284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 99.97
d2f69a2 171 Histone H3 K4-specific methyltransferase SET7/9 ca 98.13
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 97.63
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: SRA domain-like
domain: E3 ubiquitin-protein ligase UHRF1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-58  Score=443.38  Aligned_cols=160  Identities=33%  Similarity=0.592  Sum_probs=147.6

Q ss_pred             cCcccCCCCccccCCCCcCCceechHhHHHHhcccCcccCCcceeeccCCCCCCCeEEEEEecCCCCCCCCCCCeEEEEc
Q 009453          189 KGVRTNMRKRLGVVPGVEIGDIFFFRMEMCLIGLHSQSMAGIDYMITRSDLDEEPVAVSIISSGGYDDDAEDSDILIYSG  268 (534)
Q Consensus       189 ~~~~~n~~k~~G~vpGv~vGd~f~~R~el~~~GlH~~~~~GId~~~~~~~~~~~~~A~SIV~SGgY~dd~D~gd~liYtG  268 (534)
                      +...+++.|+||+||||+|||||+||+||+++|||+++|+||+|++.       .+|+|||+||+|+||+|++|+|||||
T Consensus         9 ~~~~~~p~~~~G~vpGv~VGd~F~~R~el~~~GlH~~~~aGI~g~~~-------~GA~SIV~SGgYeDD~D~gd~liYTG   81 (209)
T d2zkda1           9 TECTIVPANHFGPIPGVPVGTMWRFRVQVSESGVHRPHVAGIHGRSN-------DGAYSLVLAGGYEDDVDNGNYFTYTG   81 (209)
T ss_dssp             CCCCSSCTTCCSCCTTCCTTCEESSHHHHHHTTSSCCSSCSEEEETT-------TEEEEEEECSCSTTCEECSSEEEEEC
T ss_pred             ceEEeCCCCcccCCCCCCCCCEECCHHHHHHcCCCCCccCcEeecCC-------CceEEEEECCCccccccCCcEEEEEC
Confidence            44567899999999999999999999999999999999999999753       68999999999999999999999999


Q ss_pred             cCCCCCC----CCCcccCcccchhhHHHHHH--------------HHhCCccEEEeccccc---cCCCCceeeeeCeeee
Q 009453          269 QGGNANR----KGEQAADQKLERGNLALERS--------------LRRASEVRVIRGMKDA---INQSSKVYVYDGLYTV  327 (534)
Q Consensus       269 ~GG~~~~----~~~~~~DQkl~~gNlAL~~S--------------~~~~~PVRVIRg~~~~---~~~~~k~YrYDGLY~V  327 (534)
                      +||++..    +..|..||+|++|||||++|              |++++|||||||++..   .+.|.++|||||||+|
T Consensus        82 ~GG~d~~~~k~~~~q~~DQkl~~gNlAL~~Sc~~~~n~~~~~~~~~~~g~PVRVIRg~k~~~~~~~~p~~gYrYDGLY~V  161 (209)
T d2zkda1          82 SGGRDLSGNKRTAGQSSDQKLTNNNRALALNCHSPINEKGAEAEDWRQGKPVRVVRNMKGGKHSKYAPAEGNRYDGIYKV  161 (209)
T ss_dssp             SCCBCCTTTCSCCCBCSCCCSSHHHHHHHHTSSSCCCTTCEECTTGGGSCCEEEEEEGGGGGTCTTSCSSSEEEEEEEEE
T ss_pred             CCCccccCCccccccccceeeccchHHHhhccccccccccchhhhhhcCCceEEEEeeccccCCCcCCCceEEeCcEEEE
Confidence            9999643    33589999999999999999              7899999999999753   4678999999999999


Q ss_pred             eeeEEecCCCcceeeeEeeeecCCCCCc
Q 009453          328 QESWTEKGKSGCNIFKYKLVRIPGQPGA  355 (534)
Q Consensus       328 ~~~w~e~g~~G~~v~kfkL~RlpgQp~~  355 (534)
                      ++||.|+|++|+.||||+|+|+||||+.
T Consensus       162 ~~~w~e~gk~G~~V~rF~L~R~~gQp~p  189 (209)
T d2zkda1         162 VKYWPERGKSGFLVWRYLLRRDDTEPEP  189 (209)
T ss_dssp             EEEEEEECTTSSEEEEEEEEECCSSCCT
T ss_pred             EEEEEccCCCCcEEEEEEEEECCCCCCC
Confidence            9999999999999999999999999984
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure