Citrus Sinensis ID: 009460

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK
cccHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHccHHHHHccccHHHHHHHHHHHHccccEEEEEEccccccccccccccEEEEEccccEEEEEcccccccccccccccccccEEEEEEEEEcccccccccEEEEEcccccccccccccEEEEccccccccccccccccEEEEEEEEEccccccccccEEccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccEEEEEEEEcccccccccccEEEEEccccccEEEEEccccccEEEccccccccccEEEEEEEEEEcccccccEEEEEEccccccccccccEEEcccccHccccccccccccEEEEcccEccHHHHHHHHccccccccEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHEEEEcc
mdgvdqlaperkkaqfdvdemkivwagsrhaFQVSDRIARLvasdpafrkdNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLrssvdepaftdlhwgmfvpaikgqgtdeqhqkwLPLAYKMEIIGCYAqtelghgsnvqglettatfdpqtdefvihsptltsskwwpgglgkvsTHAVVYARLItdgqdhgvnGFIVQLrsledhsplpgitigdigmkfgngayntmdngvlrfehvriprnqMLMRVSQVTregkyvqsnvprqllYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRqfgsknggpetqVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRlqandfstlpeaHACTAGLKSLTTTATADGIEECRKlcgghgylcssglpelfavyvpactyegdnIVLLLQVARFLMKTVSqlgygnmpvgtttYMGRAEQLMQchcgvqkaedwlnpSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK
mdgvdqlaperkkaqfdvdeMKIVWAGsrhafqvsDRIARLvasdpafrkdnramlsrkelfkntlRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTltsskwwpgglGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVtregkyvqsnvprqllYGTMVYVRQTIVADASCALSRAVCIATRYSAVrrqfgsknggpetQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK
MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFaelaadlveaavaHCQLIVVSK
****************DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS***********DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVV**
**GVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKY**SNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG*****PETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTD****************HACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT**************TYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACA************FAELAADLVEAAVAHCQLIVVSK
**************QFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK
*DGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query534 2.2.26 [Sep-21-2011]
O65202 664 Peroxisomal acyl-coenzyme yes no 1.0 0.804 0.829 0.0
Q9ZQP2 664 Putative peroxisomal acyl no no 1.0 0.804 0.803 0.0
P07872 661 Peroxisomal acyl-coenzyme yes no 0.977 0.789 0.430 1e-126
Q5RC19 660 Peroxisomal acyl-coenzyme yes no 0.971 0.786 0.427 1e-126
Q15067 660 Peroxisomal acyl-coenzyme yes no 0.971 0.786 0.427 1e-125
Q9R0H0 661 Peroxisomal acyl-coenzyme yes no 0.977 0.789 0.425 1e-125
Q9Z1N0 661 Peroxisomal acyl-coenzyme yes no 0.968 0.782 0.437 1e-125
Q8HYL8 661 Peroxisomal acyl-coenzyme N/A no 0.966 0.780 0.423 1e-125
Q3SZP5 660 Peroxisomal acyl-coenzyme yes no 0.977 0.790 0.425 1e-124
Q7KML2 669 Probable peroxisomal acyl yes no 0.840 0.671 0.425 1e-102
>sp|O65202|ACOX1_ARATH Peroxisomal acyl-coenzyme A oxidase 1 OS=Arabidopsis thaliana GN=ACX1 PE=1 SV=1 Back     alignment and function desciption
 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/534 (82%), Positives = 491/534 (91%)

Query: 1   MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
           M+G+D LA ER KA+FDV++MKIVWAGSRHAF+VSDRIARLVASDP F K NRA LSRKE
Sbjct: 1   MEGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKE 60

Query: 61  LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
           LFK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT+EQ +
Sbjct: 61  LFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQK 120

Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
           KWL LA KM+IIGCYAQTELGHGSNVQGLETTATFDP+TDEFVIH+PT T+SKWWPGGLG
Sbjct: 121 KWLSLANKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHTPTQTASKWWPGGLG 180

Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
           KVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN+MDNG
Sbjct: 181 KVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNG 240

Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
            L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS ALSRAV
Sbjct: 241 FLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAV 300

Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
           CIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT+
Sbjct: 301 CIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTE 360

Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 420
           RL A+DF+TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL  SGLPELFAVYVPA
Sbjct: 361 RLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAVYVPA 420

Query: 421 CTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480
           CTYEGDN+VL LQVARFLMKTV+QLG G +PVGTT YMGRA  L+QC  GVQKAEDWLNP
Sbjct: 421 CTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQCRSGVQKAEDWLNP 480

Query: 481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK 534
             +LEAFEARA+RM+V CA+NLSKF NQE+GF EL ADLVEAA+AHCQLIVVSK
Sbjct: 481 DVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSK 534
Catalyzes the desaturation of both long- and medium-chain acyl-CoAs to 2-trans-enoyl-CoAs. Most active with C14-CoA. Activity on long-chain mono-unsaturated substrates is 40% higher than with the corresponding saturated substrates. Seems to be an important factor in the general metabolism of root tips. May be involved in the biosynthesis of jasmonic acid.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6
>sp|Q9ZQP2|ACO12_ARATH Putative peroxisomal acyl-coenzyme A oxidase 1.2 OS=Arabidopsis thaliana GN=ACX1.2 PE=2 SV=1 Back     alignment and function description
>sp|P07872|ACOX1_RAT Peroxisomal acyl-coenzyme A oxidase 1 OS=Rattus norvegicus GN=Acox1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RC19|ACOX1_PONAB Peroxisomal acyl-coenzyme A oxidase 1 OS=Pongo abelii GN=ACOX1 PE=2 SV=2 Back     alignment and function description
>sp|Q15067|ACOX1_HUMAN Peroxisomal acyl-coenzyme A oxidase 1 OS=Homo sapiens GN=ACOX1 PE=1 SV=3 Back     alignment and function description
>sp|Q9R0H0|ACOX1_MOUSE Peroxisomal acyl-coenzyme A oxidase 1 OS=Mus musculus GN=Acox1 PE=1 SV=5 Back     alignment and function description
>sp|Q9Z1N0|ACOX1_CAVPO Peroxisomal acyl-coenzyme A oxidase 1 OS=Cavia porcellus GN=ACOX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8HYL8|ACOX1_PHACI Peroxisomal acyl-coenzyme A oxidase 1 OS=Phascolarctos cinereus GN=ACOX1 PE=1 SV=2 Back     alignment and function description
>sp|Q3SZP5|ACOX1_BOVIN Peroxisomal acyl-coenzyme A oxidase 1 OS=Bos taurus GN=ACOX1 PE=2 SV=1 Back     alignment and function description
>sp|Q7KML2|ACOX1_DROME Probable peroxisomal acyl-coenzyme A oxidase 1 OS=Drosophila melanogaster GN=CG5009 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query534
109157676 683 Chain A, X-Ray Crystal Structure Of Leac 1.0 0.781 0.878 0.0
350535511 664 peroxisomal acyl-CoA oxidase 1A [Solanum 1.0 0.804 0.878 0.0
58531952 664 peroxisomal acyl-CoA oxidase 1A [Solanum 1.0 0.804 0.876 0.0
147866564 664 hypothetical protein VITISV_000871 [Viti 1.0 0.804 0.883 0.0
321438027 664 ACX [Gossypium hirsutum] 1.0 0.804 0.859 0.0
357482107 664 Peroxisomal acyl-CoA oxidase 1A [Medicag 1.0 0.804 0.865 0.0
255568739 664 acyl-CoA oxidase, putative [Ricinus comm 1.0 0.804 0.876 0.0
402744131 664 acyl-CoA oxidase 1 [Prunus persica] 1.0 0.804 0.859 0.0
224138652 664 predicted protein [Populus trichocarpa] 1.0 0.804 0.867 0.0
351725645 665 acyl-CoA oxidase [Glycine max] gi|155534 1.0 0.803 0.865 0.0
>gi|109157676|pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) gi|109157677|pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) gi|109157678|pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Back     alignment and taxonomy information
 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/534 (87%), Positives = 504/534 (94%)

Query: 1   MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
           M+GVD LA ERKKA FDVDEMKIVWAGSRH F+++DRI++LVASDP F K+ R ML RKE
Sbjct: 20  MEGVDYLADERKKAGFDVDEMKIVWAGSRHDFELTDRISKLVASDPGFSKEGRTMLPRKE 79

Query: 61  LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
           LFKNTLRKAAYAWKRIIELRLS+EEA+MLR  VDEPAFTDLHWGMF+PAIKGQGTD+Q +
Sbjct: 80  LFKNTLRKAAYAWKRIIELRLSQEEATMLRRYVDEPAFTDLHWGMFIPAIKGQGTDKQQE 139

Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
           KWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG
Sbjct: 140 KWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 199

Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
           KVSTHAVVYARLITDG+D+GVNGFIVQLRSLEDH PLPG+T+GDIGMKFGNGAYN+MDNG
Sbjct: 200 KVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMKFGNGAYNSMDNG 259

Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
           VL F+HVRIPR+QMLMRVSQVT+EGKYVQS++PRQLLYGTMVYVRQ+IVADAS A+SRAV
Sbjct: 260 VLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYVRQSIVADASLAMSRAV 319

Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
           CIATRYSAVRRQFGS+NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ
Sbjct: 320 CIATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 379

Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 420
           RL ANDFSTLPEAHACTAGLKSLTT+ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA
Sbjct: 380 RLAANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 439

Query: 421 CTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480
           CTYEGDN+VL LQVARFLMKT+SQLG G  PVGT +YMGR E LMQC   V++AEDWL P
Sbjct: 440 CTYEGDNVVLQLQVARFLMKTISQLGTGKKPVGTVSYMGRIEHLMQCRSDVKQAEDWLKP 499

Query: 481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK 534
           SA+LEAFEAR+ RMSVACA+NLSKF NQEEGFAELAADLVEAAVAHCQLIVVSK
Sbjct: 500 SAVLEAFEARSARMSVACAKNLSKFENQEEGFAELAADLVEAAVAHCQLIVVSK 553

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|350535511|ref|NP_001234198.1| peroxisomal acyl-CoA oxidase 1A [Solanum lycopersicum] gi|58531948|gb|AAW78689.1| peroxisomal acyl-CoA oxidase 1A [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|58531952|gb|AAW78691.1| peroxisomal acyl-CoA oxidase 1A [Solanum cheesmaniae] Back     alignment and taxonomy information
>gi|147866564|emb|CAN79431.1| hypothetical protein VITISV_000871 [Vitis vinifera] Back     alignment and taxonomy information
>gi|321438027|gb|ADW84019.1| ACX [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|357482107|ref|XP_003611339.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] gi|355512674|gb|AES94297.1| Peroxisomal acyl-CoA oxidase 1A [Medicago truncatula] Back     alignment and taxonomy information
>gi|255568739|ref|XP_002525341.1| acyl-CoA oxidase, putative [Ricinus communis] gi|223535400|gb|EEF37074.1| acyl-CoA oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|402744131|gb|AFQ93693.1| acyl-CoA oxidase 1 [Prunus persica] Back     alignment and taxonomy information
>gi|224138652|ref|XP_002326656.1| predicted protein [Populus trichocarpa] gi|222833978|gb|EEE72455.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351725645|ref|NP_001235564.1| acyl-CoA oxidase [Glycine max] gi|15553480|gb|AAL01888.1|AF404404_1 acyl-CoA oxidase [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query534
TAIR|locus:2129121 664 ACX1 "acyl-CoA oxidase 1" [Ara 1.0 0.804 0.810 3.2e-239
TAIR|locus:2058779 664 ACX5 "acyl-CoA oxidase 5" [Ara 1.0 0.804 0.784 2.8e-233
UNIPROTKB|F1NY37 662 ACOX1 "Acyl-coenzyme A oxidase 0.975 0.787 0.445 9.1e-116
UNIPROTKB|F1P668 661 ACOX1 "Acyl-coenzyme A oxidase 0.977 0.789 0.427 1.4e-112
RGD|619757 661 Acox1 "acyl-CoA oxidase 1, pal 0.975 0.788 0.426 1.8e-112
UNIPROTKB|P07872 661 Acox1 "Peroxisomal acyl-coenzy 0.975 0.788 0.426 1.8e-112
UNIPROTKB|Q9Z1N0 661 ACOX1 "Peroxisomal acyl-coenzy 0.971 0.785 0.434 2.9e-112
UNIPROTKB|E2RAF6 661 ACOX1 "Acyl-coenzyme A oxidase 0.977 0.789 0.423 4.6e-112
UNIPROTKB|Q5RC19 660 ACOX1 "Peroxisomal acyl-coenzy 0.977 0.790 0.417 7.6e-112
UNIPROTKB|Q15067 660 ACOX1 "Peroxisomal acyl-coenzy 0.977 0.790 0.417 2e-111
TAIR|locus:2129121 ACX1 "acyl-CoA oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2306 (816.8 bits), Expect = 3.2e-239, P = 3.2e-239
 Identities = 433/534 (81%), Positives = 480/534 (89%)

Query:     1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
             M+G+D LA ER KA+FDV++MKIVWAGSRHAF+VSDRIARLVASDP F K NRA LSRKE
Sbjct:     1 MEGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKE 60

Query:    61 LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
             LFK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT+EQ +
Sbjct:    61 LFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQK 120

Query:   121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
             KWL LA KM+IIGCYAQTELGHGSNVQGLETTATFDP+TDEFVIH+PT T+SKWWPGGLG
Sbjct:   121 KWLSLANKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHTPTQTASKWWPGGLG 180

Query:   181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
             KVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN+MDNG
Sbjct:   181 KVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNG 240

Query:   241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
              L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS ALSRAV
Sbjct:   241 FLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAV 300

Query:   301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
             CIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT+
Sbjct:   301 CIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTE 360

Query:   361 RLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 420
             RL A+DF+TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL  SGLPELFAVYVPA
Sbjct:   361 RLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAVYVPA 420

Query:   421 CTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480
             CTYEGDN+VL LQVARFLMKTV+QLG G +PVGTT YMGRA  L+QC  GVQKAEDWLNP
Sbjct:   421 CTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQCRSGVQKAEDWLNP 480

Query:   481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFXXXXXXXXXXXXXHCQLIVVSK 534
               +LEAFEARA+RM+V CA+NLSKF NQE+GF             HCQLIVVSK
Sbjct:   481 DVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSK 534
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0003997 "acyl-CoA oxidase activity" evidence=IEA;ISS;IMP;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006631 "fatty acid metabolic process" evidence=IEA
GO:0006635 "fatty acid beta-oxidation" evidence=IEA;IDA;NAS
GO:0008152 "metabolic process" evidence=IEA
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IMP
GO:0005777 "peroxisome" evidence=ISS;IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0002213 "defense response to insect" evidence=IGI;RCA
GO:0009555 "pollen development" evidence=IGI
GO:0009620 "response to fungus" evidence=IEP;RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006633 "fatty acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2058779 ACX5 "acyl-CoA oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NY37 ACOX1 "Acyl-coenzyme A oxidase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P668 ACOX1 "Acyl-coenzyme A oxidase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|619757 Acox1 "acyl-CoA oxidase 1, palmitoyl" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P07872 Acox1 "Peroxisomal acyl-coenzyme A oxidase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Z1N0 ACOX1 "Peroxisomal acyl-coenzyme A oxidase 1" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAF6 ACOX1 "Acyl-coenzyme A oxidase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RC19 ACOX1 "Peroxisomal acyl-coenzyme A oxidase 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q15067 ACOX1 "Peroxisomal acyl-coenzyme A oxidase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZQP2ACO12_ARATH1, ., 3, ., 3, ., 60.80331.00.8042nono
O65202ACOX1_ARATH1, ., 3, ., 3, ., 60.82951.00.8042yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.30.691
3rd Layer1.3.3.60.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
PLN02443 664 PLN02443, PLN02443, acyl-coenzyme A oxidase 0.0
cd01150610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 0.0
PTZ00460 646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 1e-124
PLN02636 686 PLN02636, PLN02636, acyl-coenzyme A oxidase 3e-82
PLN02312680 PLN02312, PLN02312, acyl-CoA oxidase 5e-73
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 1e-43
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 3e-21
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 8e-16
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 2e-15
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 2e-15
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 3e-13
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 2e-11
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 2e-10
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 2e-10
pfam01756 186 pfam01756, ACOX, Acyl-CoA oxidase 9e-10
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 1e-08
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 3e-08
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 1e-07
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 3e-05
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 8e-04
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase Back     alignment and domain information 
 Score = 1139 bits (2949), Expect = 0.0
 Identities = 471/534 (88%), Positives = 505/534 (94%)

Query: 1   MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
           M+GVD LA ER KAQFDVD MKIVWAGSRHAF+VSDR+ARLVASDP F KDNR  LSRKE
Sbjct: 1   MEGVDHLAGERNKAQFDVDAMKIVWAGSRHAFEVSDRMARLVASDPVFSKDNRTRLSRKE 60

Query: 61  LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
           LFKNTLRKAA+AWKRIIELRL+EEEA  LRS VDEP +TDLHWGMFVPAIKGQGT+EQ +
Sbjct: 61  LFKNTLRKAAHAWKRIIELRLTEEEAGKLRSFVDEPGYTDLHWGMFVPAIKGQGTEEQQK 120

Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
           KWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFDP+TDEFVIHSPTLTSSKWWPGGLG
Sbjct: 121 KWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLG 180

Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
           KVSTHAVVYARLIT+G+DHG++GFIVQLRSL+DHSPLPG+T+GDIGMKFGNGAYNTMDNG
Sbjct: 181 KVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNG 240

Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
            LRF+HVRIPR+QMLMR+S+VTREGKYVQS+VPRQL+YGTMVYVRQTIVADAS ALSRAV
Sbjct: 241 FLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAV 300

Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
           CIATRYSAVRRQFGS++GGPETQVIDYKTQQ+RLFPLLASAYAFRFVGEWLKWLYTDVTQ
Sbjct: 301 CIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360

Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 420
           RL+ANDFSTLPEAHACTAGLKSLTT+ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA
Sbjct: 361 RLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 420

Query: 421 CTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480
           CTYEGDN+VLLLQVARFLMKTVSQLG G  PVGTT YMGR + L+QC CGVQ AEDWLNP
Sbjct: 421 CTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGTTAYMGRVQHLLQCRCGVQTAEDWLNP 480

Query: 481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK 534
           S +LEAFEARA RM+V CAQNLSKF NQE GF EL+ADLVEAAVAHCQLIVVSK
Sbjct: 481 SVVLEAFEARAARMAVTCAQNLSKFENQEAGFQELSADLVEAAVAHCQLIVVSK 534

Length = 664
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|201956 pfam01756, ACOX, Acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 534
KOG0136 670 consensus Acyl-CoA oxidase [Lipid transport and me 100.0
PLN02443 664 acyl-coenzyme A oxidase 100.0
PTZ00460 646 acyl-CoA dehydrogenase; Provisional 100.0
KOG0135661 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t 100.0
PLN02312680 acyl-CoA oxidase 100.0
cd01150610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
PLN02636686 acyl-coenzyme A oxidase 100.0
KOG0141421 consensus Isovaleryl-CoA dehydrogenase [Amino acid 100.0
KOG0139398 consensus Short-chain acyl-CoA dehydrogenase [Lipi 100.0
KOG0140408 consensus Medium-chain acyl-CoA dehydrogenase [Lip 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
KOG0138432 consensus Glutaryl-CoA dehydrogenase [Amino acid t 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
KOG0137634 consensus Very-long-chain acyl-CoA dehydrogenase [ 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
PTZ00456622 acyl-CoA dehydrogenase; Provisional 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
PTZ00457520 acyl-CoA dehydrogenase; Provisional 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
KOG1469392 consensus Predicted acyl-CoA dehydrogenase [Genera 100.0
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.86
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.86
PF14749125 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; 99.64
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.41
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.33
PF02771113 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal 98.49
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 98.47
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 98.4
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 97.04
PF01756 187 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-C 95.92
PTZ00457520 acyl-CoA dehydrogenase; Provisional 86.87
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 84.39
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-103  Score=810.08  Aligned_cols=522  Identities=53%  Similarity=0.838  Sum_probs=486.7

Q ss_pred             CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCC-CCcccCCCHHHHHHHHHHHHHHHHHHHHHc
Q 009460            1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFR-KDNRAMLSRKELFKNTLRKAAYAWKRIIEL   79 (534)
Q Consensus         1 ~~~~~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   79 (534)
                      +||  ||++||.+++||+++|+.+|+|++|...+|+++++.+.++|.|. ..+..+++++|.++...++...+++.+.++
T Consensus         9 ~Np--dl~~ER~~AtFd~e~~~~~~~Gg~e~~~~rr~i~~~v~~dp~l~~~~~~~~~sr~E~~~~~~Rk~~~~~~~~~el   86 (670)
T KOG0136|consen    9 DNP--DLQKERAKATFDVEDMAAVWAGGEERLKRRREIEDLVASDPELQDKKPLPFMSREERYENTVRKLARLTKKMREL   86 (670)
T ss_pred             CCh--HHHHHHhhccCCHHHHHHHHhcCHHHHHHHHHHHHHHhcChhhcccCcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            466  99999999999999999999999999999999999999999998 556689999999999999988999888888


Q ss_pred             CCCHHH-----HHHHhhhcCCcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEE
Q 009460           80 RLSEEE-----ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTAT  154 (534)
Q Consensus        80 g~~~~~-----gg~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~  154 (534)
                      .+....     +.....+...+.|+.+|++||.++|...||+||.++||++..+.+|+||||+||+|||||+++++||||
T Consensus        87 ~~~~d~~~~~~~~~~~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~At  166 (670)
T KOG0136|consen   87 QDNTDNENKLLGLLARVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTAT  166 (670)
T ss_pred             HhcCcchhhhhHHHhhccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeee
Confidence            774221     222233344578899999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccC
Q 009460          155 FDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAY  234 (534)
Q Consensus       155 ~d~~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~  234 (534)
                      ||+.+++||||||+.++.|||+|+||+.|+|++|+|+++++|+++|+|.|+||+||++||.++|||+|+|+++|||   +
T Consensus       167 yD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg---~  243 (670)
T KOG0136|consen  167 YDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMG---F  243 (670)
T ss_pred             ecCCcceEEecCCCcceecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCcccc---c
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999   9


Q ss_pred             CCCCcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 009460          235 NTMDNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG  314 (534)
Q Consensus       235 ~~~~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg  314 (534)
                      +|.|||++.|||||||++|||+++++|.++|.|+.++.++ +.|++|...|..++....-.+.+|++||+||+.+|+||.
T Consensus       244 ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~  322 (670)
T KOG0136|consen  244 NGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-LGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSE  322 (670)
T ss_pred             cCCccceeeecceeechHhhhhhhheecCCCccccCCccc-cceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999999999999999999999988886 999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHH
Q 009460          315 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE  394 (534)
Q Consensus       315 ~~~~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~  394 (534)
                      ..++.+|++|+|||++|+||+|.+|..||+++++.++.++|.+....+..++.+.++++|++++++|+.+|+.+.+.+++
T Consensus       323 i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~  402 (670)
T KOG0136|consen  323 IRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQ  402 (670)
T ss_pred             CCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHhhhhcCCCCcc
Q 009460          395 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA  474 (534)
Q Consensus       395 ~~q~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  474 (534)
                      ||+.||||||++.++++.+|..+.+.|||||+|.||+.|+||+|+|.+.+..+|++..+++.|+.......   ......
T Consensus       403 ~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk~l~~~v~yl~~~~~~~---~~~~~~  479 (670)
T KOG0136|consen  403 CRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGKSLSPTVAYLAASALKP---QLISGA  479 (670)
T ss_pred             HHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCCCCCCchhhhhhcccCc---cccccc
Confidence            99999999999999999999999999999999999999999999999999999998888999997654322   122334


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHH----hccCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009460          475 EDWLNPSAILEAFEARAIRMSVACAQNL----SKFTNQEEGFAELAADLVEAAVAHCQLIVVS  533 (534)
Q Consensus       475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~  533 (534)
                      .++.+ + ++++|+++|++++..+++++    +++.+...+||.++++|+++|++||++++++
T Consensus       480 ~~~~~-e-~~~a~e~~A~r~~~~a~~~l~~~~~~~~~~e~A~N~~sv~L~~Aa~~H~~~~vvk  540 (670)
T KOG0136|consen  480 GDWLN-E-YVEAFEHRAARQVWIAAENLLKLMSSGESQEVAWNLTSVELTRAARAHCRLFVVK  540 (670)
T ss_pred             cchhH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66767 6 99999999999999999986    4467889999999999999999999999986

>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism] Back     alignment and domain information
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only] Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18 Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
2fon_A 683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 0.0
1w07_A 659 Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65 0.0
1is2_A 661 Crystal Structure Of Peroxisomal Acyl-coa Oxidase-i 1e-125
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 6e-10
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 7e-10
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 6e-09
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 8e-09
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 2e-08
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 2e-08
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 2e-08
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 4e-08
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 4e-08
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 4e-08
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 4e-08
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 5e-08
3b96_A587 Structural Basis For Substrate Fatty-Acyl Chain Spe 7e-07
2uxw_A607 Crystal Structure Of Human Very Long Chain Acyl-coa 9e-07
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 3e-06
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 5e-06
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 5e-06
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 9e-06
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 9e-06
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 9e-06
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 1e-05
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 5e-05
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 5e-05
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 5e-05
2z1q_A577 Crystal Structure Of Acyl Coa Dehydrogenase Length 6e-05
3owa_A597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 6e-05
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 5e-04
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure 
Iteration: 1

 Score =  974 bits (2519), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/534 (85%), Positives = 491/534 (91%)
Query: 1   MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
           M+GVD LA ERKKA FDVDEMKIVWAGSRH F+++DRI++LVASDP F K+ R ML RKE
Sbjct: 20  MEGVDYLADERKKAGFDVDEMKIVWAGSRHDFELTDRISKLVASDPGFSKEGRTMLPRKE 79
Query: 61  LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
           LFKNTLRKAAYAWKRIIELRLS+EEA+MLR  VDEPAFTDLHWGMF+PAIKGQGTD+Q +
Sbjct: 80  LFKNTLRKAAYAWKRIIELRLSQEEATMLRRYVDEPAFTDLHWGMFIPAIKGQGTDKQQE 139
Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
           KWLPLAYKM+IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG
Sbjct: 140 KWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 199
Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
           KVSTHAVVYARLITDG+D+GVNGFIVQLRSLEDH PLPG+T+GDIGMKFGNGAYN+MDNG
Sbjct: 200 KVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMKFGNGAYNSMDNG 259
Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
           VL F+HVRIPR+QMLMRVSQVT+EGKYVQS++PRQLLYGTMVYVRQ+IVADAS A+SRAV
Sbjct: 260 VLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYVRQSIVADASLAMSRAV 319
Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
           CIATRYSAVRRQFGS+NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ
Sbjct: 320 CIATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 379
Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 420
           RL ANDFSTLPEAHACTAGLKSLTT+ATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA
Sbjct: 380 RLAANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 439
Query: 421 CTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480
           CTYEGDN+VL LQVARFLMKT+SQLG G  PVGT +YMGR E LMQC   V++AEDWL P
Sbjct: 440 CTYEGDNVVLQLQVARFLMKTISQLGTGKKPVGTVSYMGRIEHLMQCRSDVKQAEDWLKP 499
Query: 481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFXXXXXXXXXXXXXHCQLIVVSK 534
           SA+LEAFEAR+ RMSVACA+NLSKF NQEEGF             HCQLIVVSK
Sbjct: 500 SAVLEAFEARSARMSVACAKNLSKFENQEEGFAELAADLVEAAVAHCQLIVVSK 553
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659 Back     alignment and structure
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From Rat Liver Length = 661 Back     alignment and structure
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 0.0
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 0.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 2e-21
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 2e-21
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 3e-21
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 1e-20
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 3e-20
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 1e-19
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 3e-18
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 3e-18
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 5e-18
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 5e-18
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 5e-18
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 1e-17
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 2e-17
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 8e-17
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 3e-16
2z1q_A577 Acyl-COA dehydrogenase; FAD, structural genomics, 5e-16
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 6e-16
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 6e-16
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 1e-15
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 8e-15
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 1e-14
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 1e-14
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 1e-14
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 1e-14
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 1e-14
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 2e-14
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 1e-13
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 2e-13
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 1e-10
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
 Score =  689 bits (1780), Expect = 0.0
 Identities = 442/534 (82%), Positives = 490/534 (91%)

Query: 1   MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKE 60
           M+G+D LA ER KA+FDV++MKIVWAGSRHAF+VSDRIARLVASDP F K NRA LSRKE
Sbjct: 1   MEGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKE 60

Query: 61  LFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQ 120
           LFK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT+EQ +
Sbjct: 61  LFKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQK 120

Query: 121 KWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG 180
           KWL LA KM+IIGCYAQTELGHGSNVQGLETTAT DP+TDEFVIH+PT T+SKWWPGGLG
Sbjct: 121 KWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLG 180

Query: 181 KVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240
           KVSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN+MDNG
Sbjct: 181 KVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNG 240

Query: 241 VLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAV 300
            L F+HVRIPR+QMLMR+S+VTREG+YV S+VP+QL+YGTMVYVRQTIVADAS ALSRAV
Sbjct: 241 FLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAV 300

Query: 301 CIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQ 360
           CIATRYSAVRRQFG+ NGG ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVT+
Sbjct: 301 CIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTE 360

Query: 361 RLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 420
           RL A+DF+TLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL  SGLPELFAVYVPA
Sbjct: 361 RLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAVYVPA 420

Query: 421 CTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 480
           CTYEGDN+VL LQVARFLMKTV+QLG G +PVGTT YMGRA  L+QC  GVQKAEDWLNP
Sbjct: 421 CTYEGDNVVLQLQVARFLMKTVAQLGSGKVPVGTTAYMGRAAHLLQCRSGVQKAEDWLNP 480

Query: 481 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSK 534
             +LEAFEARA+RM+V CA+NLSKF NQE+GF EL ADLVEAA+AHCQLIVVSK
Sbjct: 481 DVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELLADLVEAAIAHCQLIVVSK 534
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query534
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
2z1q_A577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 99.97
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.9
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 91.2
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
Probab=100.00  E-value=3.7e-86  Score=733.34  Aligned_cols=527  Identities=45%  Similarity=0.769  Sum_probs=448.3

Q ss_pred             CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 009460            1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR   80 (534)
Q Consensus         1 ~~~~~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g   80 (534)
                      |+|  ||++||++++||+++|+.+|+|++++.++|+++++++.++|.|...+...+++++.++....+...+.+.+.++|
T Consensus         1 ~~~--~l~~er~~~~f~~~~l~~~l~g~~~~~~~r~~~~~~l~~~p~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~   78 (661)
T 2ddh_A            1 MNP--DLRKERASATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATMVKKMREYG   78 (661)
T ss_dssp             CCH--HHHHHHHHCSSCHHHHHHHHHTSHHHHHHHHHHHHHHHTCGGGCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCh--HHHHHHhhCCCCHHHHHHHHCCChhHHHHHHHHHHHHhcCcccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            566  899999999999999999999999999999999999999998876555578898898888777777777767788


Q ss_pred             CCHHHHH-HHhhhcCC--cchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeC
Q 009460           81 LSEEEAS-MLRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDP  157 (534)
Q Consensus        81 ~~~~~gg-~~~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~  157 (534)
                      +...... ....+++.  +.++.+|+++++++|..+||++|+++|||++.+|++++|||+|||+||||+.+++|+|++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~  158 (661)
T 2ddh_A           79 ISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDP  158 (661)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEET
T ss_pred             CCCchHHHHHHHHhccchhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcC
Confidence            7532211 12222232  57788998899999999999999999999999999999999999999999999999999998


Q ss_pred             CCCeEEEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCC
Q 009460          158 QTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM  237 (534)
Q Consensus       158 ~~~~~vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~  237 (534)
                      ++|+|+||||+++|+|+||+|++..||+++|+|+++++++++|+++|+||+||+++|.+.|||+|+++|+|+|   ++++
T Consensus       159 ~~~~~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~G---l~g~  235 (661)
T 2ddh_A          159 KTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFG---YEEM  235 (661)
T ss_dssp             TTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSS---CTTC
T ss_pred             CCCeEEEcCCCCCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCccccc---CCCC
Confidence            7899999999999999999986789999999999987666789999999999999999999999999999999   9999


Q ss_pred             CcceeeeCccccCccccccccccccCCCceeccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC
Q 009460          238 DNGVLRFEHVRIPRNQMLMRVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKN  317 (534)
Q Consensus       238 ~~~~v~fd~vrVP~~~lL~~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~aa~~~g~~~~al~~av~Ya~~R~qfg~~~  317 (534)
                      ++++|.||||+||++++|+++++|.++|.+..+...+ ..+..|..+|+.+++.++|+++++++++++|+++|+|||+++
T Consensus       236 ~~~~v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~-~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R~qfg~~~  314 (661)
T 2ddh_A          236 DNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNK-LTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQ  314 (661)
T ss_dssp             CCEEEEESSEEEEGGGBCCSSCEECTTCCEECCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSST
T ss_pred             cceEEEeccEEECHHHhcCcccccCCCCceeccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCC
Confidence            9999999999999999999988888788886543333 667788899999999999999999999999999999999877


Q ss_pred             CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 009460          318 GGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRK  397 (534)
Q Consensus       318 ~~~e~~i~~~q~~q~rla~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aK~~~t~~a~~~~~~~~q  397 (534)
                      +.+|.||++||.+|++|+++++.+++++++++++++.+++.....+.++.....+.+..++++|+++++.+.+++++|+|
T Consensus       315 ~~~e~~i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~~a~~~~~~a~q  394 (661)
T 2ddh_A          315 SEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRM  394 (661)
T ss_dssp             TSCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888999999999999999999999999999999888643322222332223467889999999999999999999999


Q ss_pred             HhccccccccCChhHHhhhhcccccccccHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchh-HhhhhcC--CCCcc
Q 009460          398 LCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAE-QLMQCHC--GVQKA  474 (534)
Q Consensus       398 ~~GG~Gy~~~~~l~~~~rd~~~~~~~eG~~~vl~~~ia~~ll~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~--~~~~~  474 (534)
                      +|||+||+++++++++|||+++.++++|+|+++++++|+.+|+.+++..+++...++..||.+.. ...+.++  ...+.
T Consensus       395 ~~GG~G~~~~~~l~r~~rda~~~~~~eG~~~vl~~~iar~lL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  474 (661)
T 2ddh_A          395 ACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYDQVRSGKLVGGMVSYLNDLPSQRIQPQQVAVWPTM  474 (661)
T ss_dssp             HTTHHHHSGGGSHHHHHHHHGGGGTSSSCHHHHHHHHHHHHHHHHHHHHHTCCCCGGGGGGGGCCC--------------
T ss_pred             HhCcccccccCcHHHHHHhcceeeEecCchHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHhhhhhhccccccccccch
Confidence            99999999999999999999999999999999999999999999988777766667899998653 2211111  12346


Q ss_pred             cccCChHHHHHHHHHHHHHHHHHHHHHHh----ccCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009460          475 EDWLNPSAILEAFEARAIRMSVACAQNLS----KFTNQEEGFAELAADLVEAAVAHCQLIVVS  533 (534)
Q Consensus       475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~  533 (534)
                      .++.|+++++++|++|+++++..++++++    ++++.+++||.++++++++|+||+++++++
T Consensus       475 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~~~a~n~~~~~~~~~a~a~~~~~~~~  537 (661)
T 2ddh_A          475 VDINSLEGLTEAYKLRAARLVEIAAKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVK  537 (661)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999998874    356789999999999999999999999985
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 534
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 2e-93
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 1e-70
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 6e-44
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 2e-39
d1w07a2 198 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, do 9e-21
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 2e-20
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 2e-14
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 3e-14
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 9e-13
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 1e-12
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 2e-12
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 2e-12
d2ddha2 181 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase- 8e-09
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 2e-08
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 2e-07
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 5e-07
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  284 bits (727), Expect = 2e-93
 Identities = 215/271 (79%), Positives = 247/271 (91%)

Query: 2   DGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKEL 61
           +G+D LA ER KA+FDV++MKIVWAGSRHAF+VSDRIARLVASDP F K NRA LSRKEL
Sbjct: 1   EGIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKEL 60

Query: 62  FKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQK 121
           FK+TLRK A+A+KRIIELRL+EEEA  LR  +D+PA+ DLHWGMFVPAIKGQGT+EQ +K
Sbjct: 61  FKSTLRKCAHAFKRIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKK 120

Query: 122 WLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGK 181
           WL LA KM+IIGCYAQTELGHGSNVQGLETTAT DP+TDEFVIH+PT T+SKWWPGGLGK
Sbjct: 121 WLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGK 180

Query: 182 VSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241
           VSTHAVVYARLIT+G+D+G++GFIVQLRSLEDHSPLP IT+GDIG K GNGAYN+MDNG 
Sbjct: 181 VSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGF 240

Query: 242 LRFEHVRIPRNQMLMRVSQVTREGKYVQSNV 272
           L F+HVRIPR+QMLMR+S+VTREG+YV S+V
Sbjct: 241 LMFDHVRIPRDQMLMRLSKVTREGEYVPSDV 271
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 198 Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 181 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query534
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 100.0
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 100.0
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 100.0
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 100.0
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 100.0
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 100.0
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 100.0
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 100.0
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.98
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 99.98
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 99.97
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.97
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.96
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.95
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.94
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.93
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.93
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.93
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.93
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.92
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.92
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.92
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.91
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.91
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.76
d1w07a2 198 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 98.93
d2ddha2 181 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 98.66
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5e-56  Score=437.24  Aligned_cols=269  Identities=80%  Similarity=1.274  Sum_probs=254.5

Q ss_pred             CccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Q 009460            3 GVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS   82 (534)
Q Consensus         3 ~~~~l~~~r~~~~f~~~~m~~~~~~~~e~~~lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~   82 (534)
                      |++.|++||++++||+++|+.+|+|++|+.++|+++++++.++|.|++.....+++++.++....+...+|+.+.++||.
T Consensus         2 g~~~L~~eR~~a~Fd~~el~~~l~g~ee~~~~r~~v~~~~~~dp~f~~~~~~~~sr~e~~~~~~~~~~~~~~~~~~~g~~   81 (271)
T d1w07a3           2 GIDHLADERNKAEFDVEDMKIVWAGSRHAFEVSDRIARLVASDPVFEKSNRARLSRKELFKSTLRKCAHAFKRIIELRLN   81 (271)
T ss_dssp             CCCTTHHHHTTCSSCHHHHHHHHHSSHHHHHHHHHHHHHHHTCGGGCCTTTTSSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHhccCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCcccCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999999999999999999998877778999999998888888899999999999


Q ss_pred             HHHHHHHhhhcCCcchhhhhhhchHHHHhcCCCHHHHHHHHHHHhcccceeeEecCCCCCCCCCCCCceEEEEeCCCCeE
Q 009460           83 EEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEF  162 (534)
Q Consensus        83 ~~~gg~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~L~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~  162 (534)
                      ....+....+++.+.++.+|++||+++|..+||+|||++|||++.+|++++|||+|||+||||+.+++|+|++|+++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~vh~~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~~a~TEp~~GSd~~~l~T~A~~d~~gd~~  161 (271)
T d1w07a3          82 EEEAGRLRHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEF  161 (271)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEE
T ss_pred             hhhhHHHHHHhccchHHHHHHHhhHHHHHhhCCHHHHHHhhHHHhCCCeEEEecccCCccccCcccccceeeecCCCcee
Confidence            88888888888888999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             EEecCCCCccccccCCCCCCccEEEEEEEeccCCCCCceEEEEEEeccCCCCCCCCCeEEeeCCCccCcccCCCCCccee
Q 009460          163 VIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVL  242 (534)
Q Consensus       163 vLntp~~~G~K~~v~~la~~A~~~lV~Ar~~~~~~~~G~~~flV~ir~~~~~~~~pGv~i~~~~~k~G~~~~~~~~~~~v  242 (534)
                      |||+|+.+|+|+||+|+|..|++++|+||+.++++++|+++|+||+|+.+++.+.|||+++++++|+|..++++.++++|
T Consensus       162 vlng~k~~~~K~wi~~~g~~a~~~vv~a~~~~~~~~~g~~~flV~~~~~~~~~~~pGv~v~~~~~k~G~~~~~~~~~~~i  241 (271)
T d1w07a3         162 VIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFL  241 (271)
T ss_dssp             EEECCSGGGSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEE
T ss_pred             eecccccceeeeccCCchhhhhhhheeeeecCCCCCCCEEEEEEeccccCCCCCCCceEEcccccccCccccCCCceEEE
Confidence            99999999999999998889999999999999888899999999999999999999999999999998555789999999


Q ss_pred             eeCccccCccccccccccccCCCceeccC
Q 009460          243 RFEHVRIPRNQMLMRVSQVTREGKYVQSN  271 (534)
Q Consensus       243 ~fd~vrVP~~~lL~~~~~v~~~g~~~~~~  271 (534)
                      .|||||||++||||++++|.++|.|++++
T Consensus       242 ~Fd~VrVP~~~lLg~~g~v~~~G~~~~s~  270 (271)
T d1w07a3         242 MFDHVRIPRDQMLMRLSKVTREGEYVPSD  270 (271)
T ss_dssp             EESSEEEEGGGBCCSSEEECTTCCEEECS
T ss_pred             EEeeEEECHHHcCCCCCcCCCCceEecCC
Confidence            99999999999999999999999997643
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure