Citrus Sinensis ID: 009485

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530---
MKFFAGIYVLSIASVFLLSASCTASYSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFPSNSTPEFLLQGKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIPTSLH
cccHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccEEEccccccHHHHHHHHHccccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHcccccEEEEEEEEEEccccEEEccccccccEEEEEccccccEEEEEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccEEEEEEEEEEcccHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccHHHHccccccccccEEEEEccccccccHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccc
cccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHEHHHHHHHcccEEEEEcccccccccEEEEcccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHHHHHHHHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccc
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
MKFFAGIYVLSIASVFLLSASCTASYSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNvdinqntawvqAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNILYKWQQVADKLDEDLFIRVLIQgsaaaqkvnrtVTTSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFPSNSTPEFLLQGKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTkvdpgnffrheqsiptslh
MKFFAGIYVLSIASVFLLSASCTASYSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLgigghitggaygSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLvpvpatvtvftvSKTLEQGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFPSNSTPEFLLQGKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIPTSLH
**FFAGIYVLSIASVFLLSASCTASYSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFPSNSTPEFLLQGKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFF***********
***FAGIYVLSIASVFLLSASCTASYSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFPSNSTPEFLLQGKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIP****
MKFFAGIYVLSIASVFLLSASCTASYSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFPSNSTPEFLLQGKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHE********
*KFFAGIYVLSIASVFLLSASCTASYSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFPSNSTPEFLLQGKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIP*S*H
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKFFAGIYVLSIASVFLLSASCTASYSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLEQGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFPSNSTPEFLLQGKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIPTSLH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query533 2.2.26 [Sep-21-2011]
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.951 0.930 0.476 1e-133
A6P6W0545 Cannabidiolic acid syntha N/A no 0.977 0.955 0.460 1e-131
A6P6W1545 Cannabidiolic acid syntha N/A no 0.977 0.955 0.460 1e-131
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.977 0.955 0.457 1e-130
A6P6V9544 Cannabidiolic acid syntha N/A no 0.923 0.904 0.463 1e-129
Q9SVG4570 Reticuline oxidase-like p no no 0.939 0.878 0.471 1e-124
P30986538 Reticuline oxidase OS=Esc N/A no 0.932 0.923 0.420 1e-101
P93479535 Reticuline oxidase OS=Pap N/A no 0.930 0.927 0.396 2e-96
O06997447 Uncharacterized FAD-linke yes no 0.739 0.881 0.287 2e-20
Q796Y5451 Uncharacterized FAD-linke no no 0.701 0.829 0.257 3e-19
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function desciption
 Score =  475 bits (1222), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/529 (47%), Positives = 346/529 (65%), Gaps = 22/529 (4%)

Query: 16  FLLSASCTASYSVQR-TFLYCLSFN-ANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYL 73
           F LS     S +  R  FL C S +  NN++ P     YT + + + SIL S+ QNLR++
Sbjct: 17  FFLSFHIQISIANPRENFLKCFSKHIPNNVANPK--LVYTQHDQLYMSILNSTIQNLRFI 74

Query: 74  QPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDL 133
             + PKP  I TP   SH+QA ++CSK++G+ +R RSGGHD EG+SY S++  PF+VVDL
Sbjct: 75  SDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDL 132

Query: 134 ARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGS 193
             + S+ +D++  TAWV+AGAT+GE+YY I EK+    FP G C ++G+GGH +GG YG+
Sbjct: 133 RNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGA 192

Query: 194 MMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVP 253
           +MR YG+ ADN++DA +V+  G+VLDR +MGEDLFWAIRGGGG +FGII AWK+KLV VP
Sbjct: 193 LMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVP 252

Query: 254 ATVTVFTVSKTLE-QGATNILYKWQQVADKLDEDL-----FIRVLIQGSAAAQKVNRTVT 307
           +  T+F+V K +E  G   +  KWQ +A K D+DL     FI   I  +    K   TV 
Sbjct: 253 SKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKT--TVH 310

Query: 308 TSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGF----PSNSTPEFL 363
             ++++F G  D L+ +M KSFPELG+ + DC E SWI + I+ +G      +N   E L
Sbjct: 311 GYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEIL 370

Query: 364 LQGKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAED--GPLMIWNPYGGMMSKIPENA 421
           L   A  K  F  K D+V+ PIP  A+  +  +   ED    + +  PYGG+M +I E+A
Sbjct: 371 LDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESA 430

Query: 422 IPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDL 481
           IPFPHR G ++++ Y   W   E ++ KH+NW+R++YN+  PYVS+ PR AY+NYRDLDL
Sbjct: 431 IPFPHRAGIMYELWYTASWEKQEDNE-KHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDL 489

Query: 482 GMNNKCNA-SFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIP 529
           G  N  +  ++ QARIWG KYF  NF RLV+VKTKVDP NFFR+EQSIP
Sbjct: 490 GKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIP 538
Catalyzes the oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing delta(9)-tetrahydrocannabinolate (THCA), the major cannabioid in drug-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 7
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query533
356533127543 PREDICTED: reticuline oxidase-like prote 0.969 0.952 0.706 0.0
225444135539 PREDICTED: reticuline oxidase-like prote 0.958 0.948 0.730 0.0
356533129540 PREDICTED: reticuline oxidase-like prote 0.956 0.944 0.712 0.0
147846530539 hypothetical protein VITISV_003756 [Viti 0.958 0.948 0.729 0.0
255564335548 Reticuline oxidase precursor, putative [ 0.934 0.908 0.771 0.0
356555926543 PREDICTED: reticuline oxidase-like prote 0.964 0.946 0.708 0.0
449435514546 PREDICTED: reticuline oxidase-like prote 0.945 0.923 0.735 0.0
255564331548 Reticuline oxidase precursor, putative [ 0.949 0.923 0.761 0.0
357448653545 Reticuline oxidase-like protein [Medicag 0.949 0.928 0.708 0.0
224115654545 predicted protein [Populus trichocarpa] 0.939 0.919 0.727 0.0
>gi|356533127|ref|XP_003535119.1| PREDICTED: reticuline oxidase-like protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/518 (70%), Positives = 435/518 (83%), Gaps = 1/518 (0%)

Query: 12  IASVFLLSASCTASYSVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLR 71
           +  + LLS S  AS S++  F+ CLSF ++  + P     YTP   SF+ IL+SSAQNLR
Sbjct: 9   VTLILLLSVSLAASASLEENFVQCLSFYSDK-AAPFYASIYTPQNASFNKILESSAQNLR 67

Query: 72  YLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVV 131
           YL PS PKPE IFTPL +SHVQ AV CSK+LGIHLR+RSGGHDYEGLSY SE+E+PFI+V
Sbjct: 68  YLVPSAPKPELIFTPLTDSHVQVAVTCSKKLGIHLRIRSGGHDYEGLSYVSEVESPFIIV 127

Query: 132 DLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAY 191
           DL++LR+++VDI  NTAW+QAGAT+GE+YYRIYEKS++HGFPAGLCTSLG+GGHITGGAY
Sbjct: 128 DLSKLRAIDVDIEDNTAWIQAGATIGEVYYRIYEKSSVHGFPAGLCTSLGVGGHITGGAY 187

Query: 192 GSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLVP 251
           GSMMRKYG+GADNV+DARIVDA G++LDR AMGEDLFWAIRGGGGASFGI+L WK+KLVP
Sbjct: 188 GSMMRKYGLGADNVVDARIVDANGQILDREAMGEDLFWAIRGGGGASFGILLWWKIKLVP 247

Query: 252 VPATVTVFTVSKTLEQGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVNRTVTTSYN 311
           VP TVTVFTV+++LEQ AT IL++WQ+VA  +DEDLFIRV+IQ +    K  RT+TTSYN
Sbjct: 248 VPETVTVFTVTRSLEQDATKILHRWQEVAPYIDEDLFIRVIIQPATVGNKTERTITTSYN 307

Query: 312 ALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFPSNSTPEFLLQGKAMPK 371
           A FLG ADRLLQVM++SFPELGL+++DC+ETSWIKSV+YIAG+P+++ PE LLQGK+  K
Sbjct: 308 AQFLGGADRLLQVMKESFPELGLTKKDCLETSWIKSVLYIAGYPNDTPPEVLLQGKSTFK 367

Query: 372 AYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPHRKGTL 431
            YFKAKSDFVR PIP   L GLW+R L ED PLMIWNPYGGMMSK  E+ IPFPHR GTL
Sbjct: 368 NYFKAKSDFVRDPIPETGLEGLWQRLLEEDSPLMIWNPYGGMMSKFSESDIPFPHRNGTL 427

Query: 432 FKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNASF 491
           +KIQY+TLW DG+K+ +KH +WIR LYNYM PYVS+FPR AYVNYRDLDLGMN K + S+
Sbjct: 428 YKIQYLTLWQDGDKNASKHEDWIRKLYNYMTPYVSKFPREAYVNYRDLDLGMNKKNSTSY 487

Query: 492 NQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIP 529
            QA  WG  YFK+NF RLV++KTKVDP N FRHEQSIP
Sbjct: 488 IQATAWGNMYFKDNFNRLVKIKTKVDPDNVFRHEQSIP 525

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225444135|ref|XP_002268361.1| PREDICTED: reticuline oxidase-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|356533129|ref|XP_003535120.1| PREDICTED: reticuline oxidase-like protein-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|147846530|emb|CAN81654.1| hypothetical protein VITISV_003756 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564335|ref|XP_002523164.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537571|gb|EEF39195.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356555926|ref|XP_003546280.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|449435514|ref|XP_004135540.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] gi|449488542|ref|XP_004158078.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255564331|ref|XP_002523162.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537569|gb|EEF39193.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357448653|ref|XP_003594602.1| Reticuline oxidase-like protein [Medicago truncatula] gi|355483650|gb|AES64853.1| Reticuline oxidase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224115654|ref|XP_002317089.1| predicted protein [Populus trichocarpa] gi|222860154|gb|EEE97701.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query533
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.968 0.966 0.627 3.5e-178
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.969 0.971 0.602 1.4e-174
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.958 0.951 0.611 5.6e-171
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.971 0.955 0.566 1.4e-158
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.966 0.951 0.555 1.8e-156
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.962 0.964 0.470 1.1e-126
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.964 0.966 0.460 2.4e-124
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.973 0.984 0.458 8e-124
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.954 0.960 0.456 3.1e-122
TAIR|locus:2204614531 AT1G30710 [Arabidopsis thalian 0.960 0.964 0.432 1.1e-119
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1730 (614.0 bits), Expect = 3.5e-178, P = 3.5e-178
 Identities = 330/526 (62%), Positives = 403/526 (76%)

Query:    12 IASVFLLSAS-CTASYS-VQRTFLYCLSFNANNLSTPSSTYFYTP--NTRSFSSILQSSA 67
             + ++ LLS S    S+S +Q+ F+ CL  N++  S P  + F+T   N  SF   L++SA
Sbjct:    13 LVTLLLLSLSYIPLSFSTIQQDFVMCLVDNSD-ASFPMDSSFFTHDLNASSFKLALETSA 71

Query:    68 QNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETP 127
             QNLRYL PS PKPEFIF PLYE+HVQAAV+C+K+L +HLR+RSGGHDYEGLSY SE+ET 
Sbjct:    72 QNLRYLMPSNPKPEFIFEPLYETHVQAAVLCAKKLKLHLRLRSGGHDYEGLSYVSEMETA 131

Query:   128 FIVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXX 187
             F++VDL++LR ++VDI  N+AWV AGA++GE+YYRI EKS IHGFPAGLCTSL       
Sbjct:   132 FVIVDLSKLRQISVDIESNSAWVHAGASIGEVYYRIQEKSKIHGFPAGLCTSLGIGGHII 191

Query:   188 XXXXXSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKV 247
                  SMMRK+G+GADNVLDARIVDA G++L+RAAMGED+FWAIRGGGG SFG+ILAWK+
Sbjct:   192 GGAYGSMMRKFGLGADNVLDARIVDADGKILNRAAMGEDVFWAIRGGGGGSFGVILAWKI 251

Query:   248 KLXXXXXXXXXXXXSKTLEQGATNILYKWQQVADKLDEDLFIRVLIQGSAAAQKVN-RTV 306
             KL            ++TLEQ  T +LYKWQQVADKLDEDLFIRV+IQ ++   K   RT+
Sbjct:   252 KLVPVPEIVTVFTVTRTLEQDGTKLLYKWQQVADKLDEDLFIRVIIQPTSKTPKSKERTI 311

Query:   307 TTSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETSWIKSVIYIAGFPSNSTPEFLLQG 366
             +TSY   FLG A+RLLQVMQ+SFP+LGL+++DC+ETSWIKSV+YIAGFPS +  E LL G
Sbjct:   312 STSYQGQFLGDANRLLQVMQRSFPQLGLTKKDCLETSWIKSVMYIAGFPSTAPSEALLDG 371

Query:   367 KAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAEDGPLMIWNPYGGMMSKIPENAIPFPH 426
             K++ K YFKAKSD+V  PIP + L GLW + L ED PL IWNPYGGMM+KIPE   PFPH
Sbjct:   372 KSLFKNYFKAKSDYVEEPIPVEGLEGLWEKLLEEDSPLTIWNPYGGMMAKIPETETPFPH 431

Query:   427 RKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNK 486
             R GTLFKIQ++TLW DG+ S+ KHM W+R +Y+YM  YVS+ PR+AYVNYRDLDLGMN K
Sbjct:   432 RSGTLFKIQWLTLWQDGKTSEAKHMGWMREMYSYMEQYVSKSPRSAYVNYRDLDLGMNGK 491

Query:   487 CNASFNQARIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIPTSL 532
              +     AR WG +YFK NF RLV +K K DP NFFRHEQSIPT L
Sbjct:   492 GS----DAREWGNRYFKGNFERLVEIKAKFDPENFFRHEQSIPTEL 533
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204614 AT1G30710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query533
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 3e-27
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 6e-24
pfam0803145 pfam08031, BBE, Berberine and berberine like 9e-19
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 2e-04
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 9e-04
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  106 bits (267), Expect = 3e-27
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 80  PEFIFTPLYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARL-RS 138
           P  +  P  E  V A V  +   G+ + VR GG    G +      T  +V+DL+RL   
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVL----TGGVVLDLSRLNGI 56

Query: 139 VNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKY 198
           + +D    TA V+AG T+G+L   +  K  + G   G      +GG I     G    +Y
Sbjct: 57  LEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERY 116

Query: 199 GIGADNVLDARIVDARGRVLD 219
           G+  DNVL   +V A G V+ 
Sbjct: 117 GLTRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 533
PLN02441525 cytokinin dehydrogenase 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK11183564 D-lactate dehydrogenase; Provisional 99.92
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.89
KOG1232511 consensus Proteins containing the FAD binding doma 99.89
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.86
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.8
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.76
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.74
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.71
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.69
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.67
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.66
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.53
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.42
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.29
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 95.84
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.3
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 95.02
PRK09799258 putative oxidoreductase; Provisional 94.7
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 94.52
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 93.9
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 90.01
PLN00107257 FAD-dependent oxidoreductase; Provisional 89.4
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 89.22
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 88.06
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 88.0
PLN02906 1319 xanthine dehydrogenase 83.97
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 82.92
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=3.9e-39  Score=343.08  Aligned_cols=189  Identities=22%  Similarity=0.277  Sum_probs=168.7

Q ss_pred             cccCCCCCCCccEEEecCCHHHHHHHHHHHH--hcCCeEEEEeCCcCCCCCccccCCCCCeEEEEcCCCCc------E-E
Q 009485           70 LRYLQPSVPKPEFIFTPLYESHVQAAVICSK--RLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRS------V-N  140 (533)
Q Consensus        70 ~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~------i-~  140 (533)
                      ..|.......|.+|++|+|++||+++|++|+  +++++|++||+||++.|.+...    ++++|||++||+      + +
T Consensus        55 ~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~----~GivIdms~Ln~i~~~~~ii~  130 (525)
T PLN02441         55 KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAP----GGVVVDMRSLRGGVRGPPVIV  130 (525)
T ss_pred             cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCC----CeEEEECCCCCCcCccCceEE
Confidence            3477777789999999999999999999997  6799999999999999888765    579999999999      3 7


Q ss_pred             EeCCCCEEEEcCCCcHHHHHHHHHHhCCceeec-CCCCCCccccccccCCCCCCCccccCccccceeeeEEEccCCceec
Q 009485          141 VDINQNTAWVQAGATVGELYYRIYEKSNIHGFP-AGLCTSLGIGGHITGGAYGSMMRKYGIGADNVLDARIVDARGRVLD  219 (533)
Q Consensus       141 ~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~-~G~~~~vgvgG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~  219 (533)
                      +|.+..+|+|++|++|.++.+++.++|+  .++ .+....++|||++++||.|..+.+||..+|+|++++||+++|++++
T Consensus       131 vd~~~~~VtV~aG~~~~dv~~~l~~~Gl--aP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~  208 (525)
T PLN02441        131 VSGDGPYVDVSGGELWIDVLKATLKHGL--APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVT  208 (525)
T ss_pred             EcCCCCEEEEcCCCCHHHHHHHHHHCCC--ccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEE
Confidence            8888999999999999999999999984  332 3666788999999999999999999999999999999999999997


Q ss_pred             -ccCCCcchHHHhhcCCCCceeEEEEEEEEEEeeCceEEEEEEEecc
Q 009485          220 -RAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTL  265 (533)
Q Consensus       220 -~~~~~~dl~~a~rg~~~g~~GiVt~~~l~~~~~~~~~~~~~~~~~~  265 (533)
                       ++.+|+|||||+|||. |+|||||++|+|++|+|+...++.+.+..
T Consensus       209 ~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~  254 (525)
T PLN02441        209 CSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD  254 (525)
T ss_pred             eCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence             6677999999999987 89999999999999999977776666653

>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query533
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-129
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-125
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-116
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-96
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 2e-95
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-95
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-95
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-94
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-94
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 3e-94
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 3e-23
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 6e-19
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 6e-16
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 7e-12
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 8e-12
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 4e-11
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 2e-07
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 3e-06
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  459 bits (1181), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/515 (45%), Positives = 322/515 (62%), Gaps = 21/515 (4%)
Query: 29  QRTFLYCLSFN-ANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPL 87
           +  FL C S +  NN++ P     YT + + + SIL S+ QNLR++  + PKP  I TP 
Sbjct: 4   RENFLKCFSKHIPNNVANPK--LVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61
Query: 88  YESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNT 147
             SH+QA ++CSK++G+ +R RSGGHD EG+SY S++  PF+VVDL  + S+ +D++  T
Sbjct: 62  NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQT 119
Query: 148 AWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLXXXXXXXXXXXXSMMRKYGIGADNVLD 207
           AWV+AGAT+GE+YY I EK+    FP G C ++            ++MR YG+ ADN++D
Sbjct: 120 AWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179
Query: 208 ARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLXXXXXXXXXXXXSKTLE- 266
           A +V+  G+VLDR +MGEDLFWAIRGGGG +FGII AWK+KL             K +E 
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239
Query: 267 QGATNILYKWQQVADKLDEDL-----FIRVLIQGSAAAQKVNRTVTTSYNALFLGVADRL 321
            G   +  KWQ +A K D+DL     FI   I  +    K   TV   ++++F G  D L
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKT--TVHGYFSSIFHGGVDSL 297
Query: 322 LQVMQKSFPELGLSRQDCIETSWIKSVIYIAGF----PSNSTPEFLLQGKAMPKAYFKAK 377
           + +M KSFPELG+ + DC E SWI + I+ +G      +N   E LL   A  K  F  K
Sbjct: 298 VDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIK 357
Query: 378 SDFVRTPIPTKALGGLWRRFLAED--GPLMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQ 435
            D+V+ PIP  A+  +  +   ED    + +  PYGG+M +I E+AIPFPHR G ++++ 
Sbjct: 358 LDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELW 417
Query: 436 YVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNNKCNA-SFNQA 494
           Y   W   E ++ KH+NW+R++YN+  PYVS+ PR AY+NYRDLDLG  N  +  ++ QA
Sbjct: 418 YTASWEKQEDNE-KHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQA 476
Query: 495 RIWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIP 529
           RIWG KYF  NF RLV+VKTKVDP NFFR+EQSIP
Sbjct: 477 RIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIP 511
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query533
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-172
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-171
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-170
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-169
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-169
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-161
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-112
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 3e-40
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 1e-32
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 3e-19
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 1e-15
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 5e-14
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 9e-13
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 1e-07
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-06
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 7e-05
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 2e-04
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 5e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  570 bits (1470), Expect = 0.0
 Identities = 242/514 (47%), Positives = 335/514 (65%), Gaps = 15/514 (2%)

Query: 27  SVQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTP 86
           + +  FL C S +  N +  +    YT + + + SIL S+ QNLR++  + PKP  I TP
Sbjct: 2   NPRENFLKCFSKHIPN-NVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60

Query: 87  LYESHVQAAVICSKRLGIHLRVRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQN 146
              SH+QA ++CSK++G+ +R RSGGHD EG+SY S+   PF+VVDL  + S+ +D++  
Sbjct: 61  SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQ--VPFVVVDLRNMHSIKIDVHSQ 118

Query: 147 TAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGSMMRKYGIGADNVL 206
           TAWV+AGAT+GE+YY I EK+    FP G C ++G+GGH +GG YG++MR YG+ ADN++
Sbjct: 119 TAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNII 178

Query: 207 DARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLE 266
           DA +V+  G+VLDR +MGEDLFWAIRGGGG +FGII AWK+KLV VP+  T+F+V K +E
Sbjct: 179 DAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNME 238

Query: 267 -QGATNILYKWQQVADKLDEDLFIRVLIQGSAAA---QKVNRTVTTSYNALFLGVADRLL 322
             G   +  KWQ +A K D+DL +              K   TV   ++++F G  D L+
Sbjct: 239 IHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLV 298

Query: 323 QVMQKSFPELGLSRQDCIETSWIKSVIYIAGF----PSNSTPEFLLQGKAMPKAYFKAKS 378
            +M KSFPELG+ + DC E SWI + I+ +G      +N   E LL   A  K  F  K 
Sbjct: 299 DLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKL 358

Query: 379 DFVRTPIPTKALGGLWRRFLAEDGP--LMIWNPYGGMMSKIPENAIPFPHRKGTLFKIQY 436
           D+V+ PIP  A+  +  +   ED    + +  PYGG+M +I E+AIPFPHR G ++++ Y
Sbjct: 359 DYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWY 418

Query: 437 VTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLGMNN-KCNASFNQAR 495
              W   E ++ KH+NW+R++YN+  PYVS+ PR AY+NYRDLDLG  N     ++ QAR
Sbjct: 419 TASWEKQEDNE-KHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQAR 477

Query: 496 IWGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIP 529
           IWG KYF  NF RLV+VKTKVDP NFFR+EQSIP
Sbjct: 478 IWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIP 511
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query533
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.95
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.91
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.87
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.78
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.31
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.6
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.34
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.51
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.36
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 92.93
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 89.48
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 86.98
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=1.1e-89  Score=738.76  Aligned_cols=500  Identities=48%  Similarity=0.915  Sum_probs=429.0

Q ss_pred             hhhhHHHHhccCcCCCCCCCcceEECCCCCChHHHHhhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhcCCeEE
Q 009485           28 VQRTFLYCLSFNANNLSTPSSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRLGIHLR  107 (533)
Q Consensus        28 ~~~~~~~cl~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~  107 (533)
                      +.++|.+||+... .+|.++++.|++|+|+.|+++++++.+|.||+....++|.+||+|+|++||+++|++|+++++||+
T Consensus         3 ~~~~f~~c~~~~~-~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~   81 (518)
T 3vte_A            3 PRENFLKCFSKHI-PNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIR   81 (518)
T ss_dssp             HHHHHHHHHHHHC-CC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEE
T ss_pred             hhHHHHHHHHhcC-CccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEE
Confidence            5678999999876 667788999999999999999888899999999889999999999999999999999999999999


Q ss_pred             EEeCCcCCCCCccccCCCCCeEEEEcCCCCcEEEeCCCCEEEEcCCCcHHHHHHHHHHhCCceeecCCCCCCcccccccc
Q 009485          108 VRSGGHDYEGLSYASEIETPFIVVDLARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHIT  187 (533)
Q Consensus       108 ~~ggGh~~~g~s~~~~g~~~gvvIdl~~~~~i~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~G~~~~vgvgG~~~  187 (533)
                      +|||||++.|.+...  ..+++||||++|++|++|+++++++||||+++.+|+++|.++|+++.+++|.|+++||||+++
T Consensus        82 vrggGh~~~g~~~~~--~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~  159 (518)
T 3vte_A           82 TRSGGHDAEGMSYIS--QVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFS  159 (518)
T ss_dssp             EESSCCCTTCTTTCC--SSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHH
T ss_pred             EECCCcCCCCCccCC--CCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeC
Confidence            999999998877533  136899999999999999999999999999999999999999878999999999999999999


Q ss_pred             CCCCCCCccccCccccceeeeEEEccCCceecccCCCcchHHHhhcCCCCceeEEEEEEEEEEeeCceEEEEEEEecch-
Q 009485          188 GGAYGSMMRKYGIGADNVLDARIVDARGRVLDRAAMGEDLFWAIRGGGGASFGIILAWKVKLVPVPATVTVFTVSKTLE-  266 (533)
Q Consensus       188 ggg~g~~~~~~G~~~d~v~~~~vV~~~G~~~~~~~~~~dl~~a~rg~~~g~~GiVt~~~l~~~~~~~~~~~~~~~~~~~-  266 (533)
                      |||+|+++++||+++|+|++++||++||++++...+++|||||+|||++|+|||||+++||++|.|+....|.+.+..+ 
T Consensus       160 gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~  239 (518)
T 3vte_A          160 GGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI  239 (518)
T ss_dssp             TCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCH
T ss_pred             CCCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCH
Confidence            9999999999999999999999999999999754568999999999855899999999999999998877787777654 


Q ss_pred             hhHHHHHHHHHHHHHhhcccceEEEEEeecccc---ccCCceEEEEEEEEEeCCHhHHHHHHHhhCccCCCCcccceecC
Q 009485          267 QGATNILYKWQQVADKLDEDLFIRVLIQGSAAA---QKVNRTVTTSYNALFLGVADRLLQVMQKSFPELGLSRQDCIETS  343 (533)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~l~~~~~~~~~~~  343 (533)
                      +++.+++.+|+++++.+|+++++.+.+...++.   ..+.....+.+.++|+|+.+++.+.|.+.|++++....++..++
T Consensus       240 ~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~  319 (518)
T 3vte_A          240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFS  319 (518)
T ss_dssp             HHHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEEC
T ss_pred             HHHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecc
Confidence            556789999999999999999998887653211   11123346788899999999999988888888887667788999


Q ss_pred             hHHHHHHhcCCCCC-CC---hhhcccCCCCCcccceeccccccCCCCHHHHHHHHHHHhcC--CCcEEEEEecCCCCCCC
Q 009485          344 WIKSVIYIAGFPSN-ST---PEFLLQGKAMPKAYFKAKSDFVRTPIPTKALGGLWRRFLAE--DGPLMIWNPYGGMMSKI  417 (533)
Q Consensus       344 ~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~f~~~s~~~~~~l~~~~i~~~~~~~~~~--~~~~i~~~~~Gg~~~~~  417 (533)
                      |++.+.++..++.+ .+   ++.++++......|||.|++|+.+++++++++.+++.+.+.  +.+.+.++++||+++++
T Consensus       320 w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v  399 (518)
T 3vte_A          320 WIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEI  399 (518)
T ss_dssp             HHHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTS
T ss_pred             hhhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCC
Confidence            99988887655443 33   45555554344557889999998889999999999988763  35788999999999999


Q ss_pred             CCCCCCCcccCCceEEEEEEeecCCChhHHHHHHHHHHHHHHhccccccCCCCccccccCCCccC-CCCCCCcchhhhhh
Q 009485          418 PENAIPFPHRKGTLFKIQYVTLWLDGEKSQNKHMNWIRNLYNYMAPYVSRFPRAAYVNYRDLDLG-MNNKCNASFNQARI  496 (533)
Q Consensus       418 ~~~~taf~~R~~~~~~i~~~~~W~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~g~YvNy~d~~~~-~~~~~~~~~~~~~~  496 (533)
                      ++++|||+||++..|.+++.+.|. +++.++++.+|++++++.|.|+.+.+++|+|+||+|.|++ .+...+++++.++.
T Consensus       400 ~~~~TAf~hR~~~~~~~~~~~~w~-~~~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~  478 (518)
T 3vte_A          400 SESAIPFPHRAGIMYELWYTASWE-KQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI  478 (518)
T ss_dssp             CTTSSSCCCCTTCCEEEEEEEEEC-CTTTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHH
T ss_pred             CCCCCcccccCcceEEEEEEEecC-CcchhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhh
Confidence            999999999995589999999997 4667788999999999999999766678999999999886 32123456677778


Q ss_pred             hhhhhccccHHHHHHhhhccCCCCccccCCCCCCC
Q 009485          497 WGVKYFKNNFYRLVRVKTKVDPGNFFRHEQSIPTS  531 (533)
Q Consensus       497 ~~~~yyG~n~~RL~~IK~kyDP~nvF~~~qsI~~~  531 (533)
                      |++.|||+||+||++||+||||+|||+++|||+|.
T Consensus       479 w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~  513 (518)
T 3vte_A          479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL  513 (518)
T ss_dssp             HHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCC
T ss_pred             HHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCC
Confidence            99999999999999999999999999999999985
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 533
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 2e-15
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 7e-15
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 2e-04
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 9e-04
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 0.004
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 72.6 bits (177), Expect = 2e-15
 Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 8/179 (4%)

Query: 79  KPEFIFTPLYESHVQAAVICSKR---LGIHLRVRSGGHDYEGLSYASE--IETPFIVVDL 133
            P  +  P     + A +  +         +  R  GH   G ++A    +     + D 
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 134 ARLRSVNVDINQNTAWVQAGATVGELYYRIYEKSNIHGFPAGLCTSLGIGGHITGGAYGS 193
           A    +NV  +             ++      +             L +GG ++      
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGISG 147

Query: 194 MMRKYGIGADNVLDARIVDARGRVLD-RAAMGEDLFWAIRGGGGASFGIILAWKVKLVP 251
              ++G    NVL+  ++   G ++     +  DLF A+ GG G  FG+I   ++ + P
Sbjct: 148 QAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query533
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.87
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.86
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.84
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 94.94
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 94.03
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.96
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 93.68
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.56
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 92.77
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 92.1
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 85.68
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=4.9e-37  Score=291.28  Aligned_cols=192  Identities=18%  Similarity=0.241  Sum_probs=165.9

Q ss_pred             CcceEECCCCCChHHHHhhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhc---CCeEEEEeCCcCCCCCccccC
Q 009485           47 SSTYFYTPNTRSFSSILQSSAQNLRYLQPSVPKPEFIFTPLYESHVQAAVICSKRL---GIHLRVRSGGHDYEGLSYASE  123 (533)
Q Consensus        47 ~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~---~~~~~~~ggGh~~~g~s~~~~  123 (533)
                      ++++|.+    +.....   .+...|.......|.+|++|+|++||+++|++|+++   ++||++||+||++.|.+... 
T Consensus         4 ~~g~v~t----d~~~~~---~~~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~-   75 (206)
T d1w1oa2           4 LDGKLRT----DSNATA---AASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAP-   75 (206)
T ss_dssp             TTTCEEC----SHHHHH---HTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCT-
T ss_pred             CCcEEEc----CHHHhh---hhEECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccC-
Confidence            4667666    333332   234456655677999999999999999999999997   68999999999999887665 


Q ss_pred             CCCCeEEEEcCCCCcE------EEeCCCCEEEEcCCCcHHHHHHHHHHhCCceeec-CCCCCCccccccccCCCCCCCcc
Q 009485          124 IETPFIVVDLARLRSV------NVDINQNTAWVQAGATVGELYYRIYEKSNIHGFP-AGLCTSLGIGGHITGGAYGSMMR  196 (533)
Q Consensus       124 g~~~gvvIdl~~~~~i------~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~-~G~~~~vgvgG~~~ggg~g~~~~  196 (533)
                         ++|+|||++||++      ++|++..+++||||+++.||.++|.++|  +.++ .+....++|||++++||+|..++
T Consensus        76 ---~~ividl~~l~~i~~~~~~~id~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~  150 (206)
T d1w1oa2          76 ---GGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAF  150 (206)
T ss_dssp             ---TSEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHH
T ss_pred             ---CCEeeeccccceeeeceeEEEecCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccc
Confidence               5799999999985      6899999999999999999999999998  4443 45667789999999999999999


Q ss_pred             ccCccccceeeeEEEccCCceec-ccCCCcchHHHhhcCCCCceeEEEEEEEEEEee
Q 009485          197 KYGIGADNVLDARIVDARGRVLD-RAAMGEDLFWAIRGGGGASFGIILAWKVKLVPV  252 (533)
Q Consensus       197 ~~G~~~d~v~~~~vV~~~G~~~~-~~~~~~dl~~a~rg~~~g~~GiVt~~~l~~~~~  252 (533)
                      +||..+|+|+++|+|++||++++ +..+|+||||++|||. |+|||||+++||++|+
T Consensus       151 ~~G~~~d~v~~~evV~~~G~~~~~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         151 RHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             HHCCGGGSEEEEEEEETTSCEEEEESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             cccceeeeeeEEEEEcCCCcEEEECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            99999999999999999999997 5667999999999988 8999999999999985
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure