Citrus Sinensis ID: 009514

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530---
Protein Sequence
MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSLV
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcccccHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHcccccHcHHHHHHHHHcccHHHHHHHHHHHHHHHHccHcHHHEEEccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
miyqskmapkydflQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKnnpevvsqfvgpdtgrTLSCIIEIVKDRFARTRLLASLCLIVIrnaspcylqdvgiKTKLINNLLEllddpgrvgdeASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHlqkgslhprRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIknlsagsfmnetIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASlicdpepsvQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLgnvatgkeshkEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLtcssspgssgrlvklhdagivshvknmvndpcldVKLRVKTALEQFnsfddslv
Flexible Loop (DISEMBL)
miyqskmapkydfLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKnnpevvsqfvgpdtgrTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSiknlsagsfmNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCssspgssgrLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALeqfnsfddslv
Low Complexity Region (SEG)
MIYQSKMAPKYDFLQeenmefllsllnnesenvsglGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTirlnalralrnliflaEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSLV
Disordered region (IsUnstruct)
************FLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSS*****GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF********
Disordered Region (DISOPRED)
MI*****APKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK*SL**RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD****
Disordered Region (DISEMBL)
MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSLV
Disordered Region (DISPRO)
*IYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	533	2.2.26 [Sep-21-2011]
Q05AL1	673	Armadillo repeat-containi	yes	no	0.921	0.729	0.258	7e-29
Q2KI54	673	Armadillo repeat-containi	yes	no	0.885	0.701	0.265	1e-27
Q8IUR7	673	Armadillo repeat-containi	yes	no	0.885	0.701	0.261	2e-26
Q9DBR3	673	Armadillo repeat-containi	yes	no	0.885	0.701	0.263	3e-26
Q5R6S3	673	Armadillo repeat-containi	yes	no	0.885	0.701	0.261	6e-26
Q68FK4	720	Armadillo repeat-containi	N/A	no	0.523	0.387	0.301	5e-25
O13986	789	Uncharacterized protein C	yes	no	0.705	0.476	0.255	7e-22
P40547	921	Vacuolar import and degra	yes	no	0.448	0.259	0.221	5e-07
Q503E9	536	Importin subunit alpha-6	no	no	0.420	0.417	0.252	1e-06
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.472	0.471	0.228	2e-06

>sp|Q05AL1|ARMC8_DANRE Armadillo repeat-containing protein 8 OS=Danio rerio GN=armc8 PE=2 SV=1

 Score =  129 bits (323), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 139/538 (25%), Positives = 245/538 (45%), Gaps = 47/538 (8%)

Query: 19  MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLL-GGSLIQRDAS 77
           +  L+SLL+  S++       I +H CKT   Q +LF+ G ++ +  LL   S   R  +
Sbjct: 150 IPHLMSLLS-RSQHTQEYITQIFAHCCKTPEHQTVLFNHGAIQNIAPLLISPSYKVRMQA 208

Query: 78  LESIATIFKNNPEVVSQFVGPDT-GRTLSCII--EIVKDRFARTRLLASLCLIVIRNASP 134
           L+  + +   N +V    V     G  LS +    + +D+    +L A+ CL  +  A  
Sbjct: 209 LKCFSVLAYENAQVSMTLVNVLVDGEQLSQVFVRMMQRDKPIEMQLTAAKCLTYMCRAGA 268

Query: 135 CYLQDVGIKTKLINNLLELLDDPGRVGD--EASFAFSSLIAEKEDMQKLAFEVNGVDKLY 192
              +D  I  K +  L+ +      + +  E +   + L+    ++Q++A   +  D L 
Sbjct: 269 IRTEDNCIVLKTLPCLVRMCSKERLLEERVEGAETLAYLMEPDIELQRIA---SVTDHLV 325

Query: 193 NHLQKGSLHPRRFEGI--------------------LLALADMCSKLECCRSRCLSLQ-V 231
           + L     +P     I                        A + S  E  R +    + +
Sbjct: 326 SMLADYFKYPSSVSAITDIKRLDHDLKHAHELRQAAFKLYASLGSNDEDIRKKITETENM 385

Query: 232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQV 291
           +  +V  L+  S  VR AA  CL S+SRS++ L   SF +  +  PL++LL +    V V
Sbjct: 386 MDRIVSGLSESSIKVRLAAVRCLHSLSRSVQQLRT-SFHDHAVWKPLMKLLQNAPDEVLV 444

Query: 292 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK 351
            A   + N++++F+  +   +  G ++LL  L++S  S +R+N + AL N+ F A+ K K
Sbjct: 445 MASSTLCNLLLEFSPSKEPILESGVIELLCSLTQSDSSALRVNGIWALMNMAFQADQKVK 504

Query: 352 EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL 411
            EI   L    L  L+ DP+ +V  + L L+RNL+  R +  + + +    I+ AV   L
Sbjct: 505 VEIVRALGTEQLFRLLSDPDTNVLMKTLGLLRNLLSTRPHIDQIMSSHGKQIMQAVTLIL 564

Query: 412 RIASKAEIEIQGMYVLGNVATGKESHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLR 469
                 E++ Q + +L N+A G  + KE +M  D +L +        I  ++  ++ +L+
Sbjct: 565 EGEHSIEVKEQTLCILANIADGNTA-KELIMTDDDMLQK--------IKYYMGHSNVKLQ 615

Query: 470 TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS--HVKNMVNDPCLDVKLRVKTALEQF 525
            AA + + NL  +   GS  R  KL + G V   H     +DP  D+  R KTA++Q+
Sbjct: 616 LAATFCISNLIWNEEDGSQERQDKLREMGFVDILHKLTQASDP--DLCDRAKTAMQQY 671

Danio rerio (taxid: 7955)

>sp|Q2KI54|ARMC8_BOVIN Armadillo repeat-containing protein 8 OS=Bos taurus GN=ARMC8 PE=2 SV=1

 Score =  125 bits (313), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 137/516 (26%), Positives = 236/516 (45%), Gaps = 44/516 (8%)

Query: 40  IISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP 98
           I SH CK    Q +LF+ G ++ +  LL   S   R  +L+  + +   NP+V    V  
Sbjct: 170 IFSHCCKGPDHQTILFNHGAVQNIAHLLTSVSYKVRMQALKCFSVLAFENPQVSMTLVNV 229

Query: 99  DT-GRTLSCII--EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE--- 152
              G  L  I    + +D+    +L ++ CL  +  A      D  I  K +  L+    
Sbjct: 230 LVDGELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDNCIVLKTLPCLVRMCS 289

Query: 153 ---LLDDPGRVGDEASFAF---------------SSLIAEKEDMQKLAFEVNGVD--KLY 192
              LL++  RV    + A+                 LIA   D  K    V+ +   K  
Sbjct: 290 KERLLEE--RVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRL 347

Query: 193 NHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAAC 251
           +H  K + H  R     L  A + +  E  R + +  + ++  +V  L+  S  VR AA 
Sbjct: 348 DHDLKHA-HELRQAAFKL-YASLGANDEDIRKKIIDTENMMDRIVTGLSESSVKVRLAAV 405

Query: 252 MCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 311
            CL S+SRS++ L   SF +  +  PL+++L +    + V A   + N++++F+  +   
Sbjct: 406 RCLHSLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDEILVVASSMLCNLLLEFSPSKEPI 464

Query: 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE 371
           +  G V+LL  L++S +  +R+N + AL N+ F AE K K +I   L+   L  L+ D +
Sbjct: 465 LESGAVELLCGLTQSENPALRVNGIWALMNMAFQAEQKIKADILRSLSTEQLFRLLSDSD 524

Query: 372 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA 431
            +V  + L L+RNL+  R +  + +      I+ AV   L      E++ Q + +L N+A
Sbjct: 525 LNVLMKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAVTLILEGEHNIEVKEQTLCILANIA 584

Query: 432 TGKESHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSG 489
            G  + KE +M  D +L +        I  ++  +  +L+ AA++ + NL  +   GS  
Sbjct: 585 DGTTA-KELIMTNDDILQK--------IKYYMGHSHVKLQLAAMFCISNLVWNEEEGSQE 635

Query: 490 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 525
           R  KL D GIV  +  +   P  ++  + KTAL+Q+
Sbjct: 636 RQDKLRDMGIVDILHKLSQSPDSNLCDKAKTALQQY 671

Bos taurus (taxid: 9913)

>sp|Q8IUR7|ARMC8_HUMAN Armadillo repeat-containing protein 8 OS=Homo sapiens GN=ARMC8 PE=1 SV=2

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 135/516 (26%), Positives = 235/516 (45%), Gaps = 44/516 (8%)

Query: 40  IISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP 98
           I SH CK    Q +LF+ G ++ +  LL   S   R  +L+  + +   NP+V    V  
Sbjct: 170 IFSHCCKGPDHQTILFNHGAVQNIAHLLTSLSYKVRMQALKCFSVLAFENPQVSMTLVNV 229

Query: 99  DT-GRTLSCII--EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE--- 152
              G  L  I    + +D+    +L ++ CL  +  A      D  I  K +  L+    
Sbjct: 230 LVDGELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDNCIVLKTLPCLVRMCS 289

Query: 153 ---LLDDPGRVGDEASFAF---------------SSLIAEKEDMQKLAFEVNGVD--KLY 192
              LL++  RV    + A+                 LIA   D  K    V+ +   K  
Sbjct: 290 KERLLEE--RVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRL 347

Query: 193 NHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAAC 251
           +H  K + H  R     L  A + +  E  R + +  + ++  +V  L+  S  VR AA 
Sbjct: 348 DHDLKHA-HELRQAAFKL-YASLGANDEDIRKKIIETENMMDRIVTGLSESSVKVRLAAV 405

Query: 252 MCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 311
            CL S+SRS++ L   SF +  +  PL+++L +    + V A   + N++++F+  +   
Sbjct: 406 RCLHSLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDEILVVASSMLCNLLLEFSPSKEPI 464

Query: 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE 371
           +  G V+LL  L++S +  +R+N + AL N+ F AE K K +I   L+   L  L+ D +
Sbjct: 465 LESGAVELLCGLTQSENPALRVNGIWALMNMAFQAEQKIKADILRSLSTEQLFRLLSDSD 524

Query: 372 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA 431
            +V  + L L+RNL+  R +  + +      I+ AV   L      E++ Q + +L N+A
Sbjct: 525 LNVLMKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAVTLILEGEHNIEVKEQTLCILANIA 584

Query: 432 TGKESHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSG 489
            G  + K+ +M  D +L +        I  ++  +  +L+ AA++ + NL  +   GS  
Sbjct: 585 DGTTA-KDLIMTNDDILQK--------IKYYMGHSHVKLQLAAMFCISNLIWNEEEGSQE 635

Query: 490 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 525
           R  KL D GIV  +  +   P  ++  + K AL+Q+
Sbjct: 636 RQDKLRDMGIVDILHKLSQSPDSNLCDKAKMALQQY 671

Homo sapiens (taxid: 9606)

>sp|Q9DBR3|ARMC8_MOUSE Armadillo repeat-containing protein 8 OS=Mus musculus GN=Armc8 PE=1 SV=2

 Score =  120 bits (301), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 136/516 (26%), Positives = 235/516 (45%), Gaps = 44/516 (8%)

Query: 40  IISHSCKTSLEQKLLFDAGVLKRLTSLL-GGSLIQRDASLESIATIFKNNPEVVSQFVGP 98
           I SH CK    Q +LF+ G ++ +  LL   S   R  +L+  + +   NP+V    V  
Sbjct: 170 IFSHCCKGPDHQTILFNHGAVQNIAHLLTSPSYKVRMQALKCFSVLAFENPQVSMTLVNV 229

Query: 99  DT-GRTLSCII--EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE--- 152
              G  L  I    + +D+    +L ++ CL  +  A      D  I  K +  L+    
Sbjct: 230 LVDGELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDSCIVLKTLPCLVRMCS 289

Query: 153 ---LLDDPGRVGDEASFAF---------------SSLIAEKEDMQKLAFEVNGVD--KLY 192
              LL++  RV    + A+                 LIA   D  K    V+ +   K  
Sbjct: 290 KERLLEE--RVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRL 347

Query: 193 NHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAAC 251
           +H  K + H  R     L  A + +  E  R + +  + ++  +V   +  S  VR AA 
Sbjct: 348 DHDLKHA-HELRQAAFKL-YASLGANDEDIRKKIIETETMMDRIVTGSSESSVKVRLAAV 405

Query: 252 MCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 311
            CL S+SRS++ L   SF +  +  PL+++L +    + V A   + N++++F+  +   
Sbjct: 406 RCLHSLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDEILVVASSMLCNLLLEFSPSKEPI 464

Query: 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE 371
           +  G V+LL  L++S +  +R+N + AL N+ F AE K K +I   L+   L  L+ D +
Sbjct: 465 LESGAVELLCGLTQSENPALRVNGIWALMNMAFQAEQKIKADILRSLSTEQLFRLLSDSD 524

Query: 372 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA 431
            +V  + L L+RNL+  R +  + +      I+ AV   L      E++ Q + +L N+A
Sbjct: 525 MNVLMKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAVTLILEGEHSIEVKEQTLCILANIA 584

Query: 432 TGKESHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSG 489
            G  + KE +M  D +L +        I  ++  +  +L+ AA++ + NLT +   GS  
Sbjct: 585 DGTTA-KELIMTNDDILQK--------IKYYMGHSHVKLQLAAMFCISNLTWNEEEGSQE 635

Query: 490 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 525
           R  KL D GIV  +  +      ++  + KTAL+Q+
Sbjct: 636 RQDKLRDMGIVDILHKLSQSADSNLCDKAKTALQQY 671

Mus musculus (taxid: 10090)

>sp|Q5R6S3|ARMC8_PONAB Armadillo repeat-containing protein 8 OS=Pongo abelii GN=ARMC8 PE=2 SV=1

 Score =  119 bits (298), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 135/516 (26%), Positives = 234/516 (45%), Gaps = 44/516 (8%)

Query: 40  IISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP 98
           I SH CK    Q +LF+ G ++ +  LL   S   R  +L+  + +   NP+V    V  
Sbjct: 170 IFSHCCKGPDHQTILFNHGAVQNIAHLLTSLSYKVRMQALKCFSVLAFENPQVSMTLVNV 229

Query: 99  DT-GRTLSCII--EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE--- 152
              G  L  I    + +D+    +L ++ CL  +  A      D  I  K +  L+    
Sbjct: 230 LVDGELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDNCIVLKTLPCLVRMCS 289

Query: 153 ---LLDDPGRVGDEASFAF---------------SSLIAEKEDMQKLAFEVNGVD--KLY 192
              LL++  RV    + A+                 LIA   D  K    V+ +   K  
Sbjct: 290 KERLLEE--RVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKYPSSVSAITDIKRL 347

Query: 193 NHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAAC 251
           +H  K + H  R     L  A + +  E  R + +  + ++  +V  L+  S  VR AA 
Sbjct: 348 DHDLKHA-HELRQAAFKL-YASLGANDEDIRKKIIETENMMDRIVTGLSESSVKVRLAAV 405

Query: 252 MCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 311
            CL S+SRS++ L   SF +  +  PL+++L +    + V A   + N++++F+  +   
Sbjct: 406 RCLHSLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDEILVVASSMLCNLLLEFSPSKEPI 464

Query: 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE 371
           +  G V+LL  L++S +  +R+N + AL N  F AE K K +I   L+   L  L+ D +
Sbjct: 465 LESGAVELLCGLTQSENPALRVNGIWALMNTAFQAEQKIKADILRSLSTEQLFRLLSDSD 524

Query: 372 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA 431
            +V  + L L+RNL+  R +  + +      I+ AV   L      E++ Q + +L N+A
Sbjct: 525 LNVLMKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAVTLILEGEHNIEVKEQTLCILANIA 584

Query: 432 TGKESHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSG 489
            G  + K+ +M  D +L +        I  ++  +  +L+ AA++ + NL  +   GS  
Sbjct: 585 DGTTA-KDLIMTNDDILQK--------IKYYMGHSHVKLQLAAMFCISNLIWNEEEGSQE 635

Query: 490 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 525
           R  KL D GIV  +  +   P  ++  + K AL+Q+
Sbjct: 636 RQDKLRDMGIVDILHKLSQSPDSNLCDKAKMALQQY 671

Pongo abelii (taxid: 9601)

>sp|Q68FK4|ARMC8_XENLA Armadillo repeat-containing protein 8 OS=Xenopus laevis GN=armc8 PE=2 SV=1

 Score =  116 bits (290), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 154/295 (52%), Gaps = 16/295 (5%)

Query: 235 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAAL 294
           +V+ L+  S  VR AA  CL S+SRS++ L   SF +  +  PL+++L +    + V A 
Sbjct: 436 IVNGLSETSVKVRLAAVRCLHSLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDDILVVAS 494

Query: 295 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI 354
             + N++++F+  +   +  G V+LL  L+ S +  +R+N + AL N+ F A+ K K +I
Sbjct: 495 STLCNLLLEFSPSKEPILESGAVELLCSLTLSENPALRVNGIWALMNMAFQADQKIKSDI 554

Query: 355 FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA 414
              L+   L  L+ D + +V  + L L+RNL+  R +  + +      I+ AV   L   
Sbjct: 555 LRGLSTEQLFQLLSDSDVNVLMKTLGLLRNLLSTRPHIDQIMSTHGKQIMQAVTFILEGE 614

Query: 415 SKAEIEIQGMYVLGNVATGKESHKEAVM--DQLLLRAENKAQSCIIKFLQSNDSRLRTAA 472
              E++ Q + +L N+A G  + K+ +M  D +L +        I  ++  ++ +L+ AA
Sbjct: 615 HNIEVKEQTLCILANIADGTTA-KDLIMTNDDILQK--------IKYYVGHSNLKLQLAA 665

Query: 473 VWAVLNLTCSSSPGSSGRLVKLHDAGIVS--HVKNMVNDPCLDVKLRVKTALEQF 525
           ++ + NLT +   GS  R  KL + GIV   H  +   DP L  K   KTAL+Q+
Sbjct: 666 MFCIANLTWNEEEGSQERQDKLREIGIVDILHKLSQSTDPNLCDK--AKTALQQY 718

Xenopus laevis (taxid: 8355)

>sp|O13986|YEG4_SCHPO Uncharacterized protein C26H5.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26H5.04 PE=4 SV=3

 Score =  105 bits (263), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 188/411 (45%), Gaps = 35/411 (8%)

Query: 68  GGSLIQRDASLESIATIFKNNPEVV----SQFVGPDTGRTLSCIIEIVKDRFARTRLLAS 123
            G +  RD  L+ I  +F+ N + V    S+  GP+    ++ +  +V+      RLL+ 
Sbjct: 249 NGHVSPRDMDLDEIENVFEGNKDKVALFKSEIFGPNGDEYITQLFCLVRQFDPCIRLLSI 308

Query: 124 LCLIVIRNASPCYL-QDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLA 182
            CL+ +  A      Q   I+  +   L+ L  +       A    + +I E E MQK A
Sbjct: 309 SCLVTLYKAGILSKNQTKEIQMIVTPILIRLFFESREAKQIAPRILAIIINENEIMQKTA 368

Query: 183 F------------------EVNGVDKLYNHLQ----------KGSLHPRRFEGILLALAD 214
                              E N ++ L + LQ          K        E +LLA+A 
Sbjct: 369 VNAGFIDAAKYLLEYATKEEENEINFLSDELQSSVCFNLPATKKEQKNLILESVLLAVAA 428

Query: 215 MCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI 274
           + +  +  R   +  + L ++++AL  +S+ V+ AAC CL S+SRS+  L  G   +  +
Sbjct: 429 LTTSKDEYRKLIVDAKYLPVIINALKINSNSVKKAACECLLSLSRSVYILRTG-LADADV 487

Query: 275 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 334
             PL++LL D  T V+  A  AI N+V+ F+  R  F+    +  L+    + DS++R  
Sbjct: 488 SEPLIKLLSDPDTRVKSTATSAICNLVLKFSPLREKFLTTNFIDTLISNISTKDSSLRKK 547

Query: 335 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 394
            +  LR+++F  ++  + E   ++ AS L  L  D +  VQEQ L ++RN    +  SV+
Sbjct: 548 TVWVLRHVVFGDDETIQLEPLKKIGASKLVELCNDEDLGVQEQMLQVLRNFTCQKEESVD 607

Query: 395 YIFAEDGIILDAVGRQLRIASKAEIEIQ-GMYVLGNVATGKESHKEAVMDQ 444
           ++     + L A     ++ SK  I I+  +Y+L ++A      +++++ Q
Sbjct: 608 FLLKMVPMELLAKILLEKLESKNPILIEPSIYILVHIAASDGELRDSILRQ 658

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40547|VID28_YEAST Vacuolar import and degradation protein 28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VID28 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 135/307 (43%), Gaps = 68/307 (22%)

Query: 245 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST----------------- 287
           D  +A  + L+S SRS+  L   +     I   L+++L  T T                 
Sbjct: 475 DFVAAWLLLLKSFSRSVSALRT-TLKRNKIAQLLLQILSKTYTLTKECYFAGQDFMKPEI 533

Query: 288 AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL--------SKSMDST--------- 330
            +    LG+I N VV+F+  +S  +R G + ++ ++         K+ D           
Sbjct: 534 MIMGITLGSICNFVVEFSNLQSFMLRNGIIDIIEKMLTDPLFNSKKAWDDNEDERRIALQ 593

Query: 331 ------IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN 384
                 ++ N+L  LR+L++  +++ K ++  ++  +L+   I DP  +VQ Q   L+RN
Sbjct: 594 GIPVHEVKANSLWVLRHLMYNCQNEEKFQLLAKIPMNLILDFINDPCWAVQAQCFQLLRN 653

Query: 385 LVDG----------RINSVEY-IFAEDG--------IILDAVGRQLRIASKAEIE----I 421
           L             +   VEY I  + G         + + + +++R+ +  + +    +
Sbjct: 654 LTCNSRKIVNILLEKFKDVEYKIDPQTGNKISIGSTYLFEFLAKKMRLLNPLDTQQKKAM 713

Query: 422 QG-MYVLGNVATGKESHKEAVMDQ---LLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 477
           +G +Y++ N+A   E+ K+ V++Q   L + +E   ++        NDS L+ A +W + 
Sbjct: 714 EGILYIIVNLAAVNENKKQLVIEQDEILNIMSEILVETTTDSSSNGNDSNLKLACLWVLN 773

Query: 478 NLTCSSS 484
           NL  +SS
Sbjct: 774 NLLWNSS 780

Has a role in the negative regulation of gluconeogenesis. Required for both proteasome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q503E9|IMA5_DANRE Importin subunit alpha-6 OS=Danio rerio GN=kpna5 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 22/246 (8%)

Query: 247 RSAACMCLRSVSRSIKNLSAGSFMN-----ETIVIPL-VRLLDDTSTAVQVAALGAISNI 300
           RS  C      + ++ N+++G+F +     ET  +P+ + LL+     VQ  A+ A+ NI
Sbjct: 135 RSDNCTLQFEAAWALTNIASGTFQHTKVVIETGAVPIFIELLNSEYEDVQEQAVWALGNI 194

Query: 301 VVDFTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT 359
             D    R   +  G +  L QL +KS   T   NA+ AL NL      K     F +++
Sbjct: 195 AGDNAECRDYVLNCGILPSLQQLLAKSNRLTTTRNAVWALSNL---CRGKNPPPDFAKVS 251

Query: 360 A--SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA 417
              S+L+ L+   +P V   A   +  L DG  + ++ +  + G+    V  +L + S  
Sbjct: 252 PCLSVLSRLLFSSDPDVLADACWALSYLSDGPNDKIQTVI-DSGVCRRLV--ELLMHSDY 308

Query: 418 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 477
           ++    +  +GN+ TG +     +  Q++L     A  C++  L S    ++  A W V 
Sbjct: 309 KVVSPALRAVGNIVTGDD-----IQTQVILNC--SALPCLLHLLSSPKESIKKEACWTVS 361

Query: 478 NLTCSS 483
           N+T  +
Sbjct: 362 NITAGN 367

Functions in nuclear protein import.

Danio rerio (taxid: 7955)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 125/276 (45%), Gaps = 24/276 (8%)

Query: 260 SIKNLSAGSFMNETIVI-----PL-VRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR 313
           ++ N+++G+  N  +V+     P+ V+LL   S  V+  A+ A+ N+  D    R   + 
Sbjct: 145 ALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVAGDSPKCRDLVLA 204

Query: 314 LGGV-KLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP 372
            GG+  LL QL++    ++  NA   L N          E++   L+A  L  LI   + 
Sbjct: 205 SGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSA--LQRLIHSQDE 262

Query: 373 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432
            V   A   +  L DG  + ++ +  E G+    V  +L +   A + I  +  +GN+ T
Sbjct: 263 EVLTDACWALSYLSDGTNDKIQAVI-ESGVFPRLV--ELLMHPSASVLIPALRTVGNIVT 319

Query: 433 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR-LRTAAVWAVLNLTCSSSPGSSGRL 491
           G +   + V+D       ++A  C++  L +N  + ++  A W + N+T     G+  ++
Sbjct: 320 GDDMQTQCVID-------HQALPCLLNLLTNNHKKSIKKEACWTISNITA----GNREQI 368

Query: 492 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527
             + +A I++ + +++     D+K     A+    S
Sbjct: 369 QAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATS 404

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
225435441	655	PREDICTED: armadillo repeat-containing p	0.994	0.809	0.743	0.0
224104149	666	predicted protein [Populus trichocarpa]	0.996	0.797	0.704	0.0
147805930	637	hypothetical protein VITISV_043630 [Viti	0.960	0.803	0.715	0.0
356499477	652	PREDICTED: armadillo repeat-containing p	0.994	0.812	0.667	0.0
449442531	655	PREDICTED: armadillo repeat-containing p	0.998	0.812	0.665	0.0
356569585	649	PREDICTED: armadillo repeat-containing p	0.996	0.818	0.681	0.0
255544884	675	conserved hypothetical protein [Ricinus	0.998	0.788	0.701	0.0
356524425	672	PREDICTED: armadillo repeat-containing p	0.996	0.790	0.676	0.0
15223823	666	armadillo/beta-catenin-like repeats-cont	0.996	0.797	0.582	1e-179
297847504	666	armadillo/beta-catenin repeat family pro	0.996	0.797	0.575	1e-178

>gi|225435441|ref|XP_002282785.1| PREDICTED: armadillo repeat-containing protein 8 [Vitis vinifera] gi|297746314|emb|CBI16370.3| unnamed protein product [Vitis vinifera]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/530 (74%), Positives = 450/530 (84%)

Query: 1   MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 60
           MIYQSK+APKYDFLQE+NMEFLLSLLN+E+ENV+GLGASII+HSC+TS EQ  L DAGVL
Sbjct: 123 MIYQSKLAPKYDFLQEKNMEFLLSLLNSENENVTGLGASIITHSCETSAEQNALCDAGVL 182

Query: 61  KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRL 120
           K+L  LL GSL QRDASLESIAT+ K+NPEVVS+FVGP+ GR LS + E+ KDR+ RTRL
Sbjct: 183 KKLIGLLQGSLSQRDASLESIATVIKSNPEVVSKFVGPENGRALSAVTELTKDRYPRTRL 242

Query: 121 LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
           LA +CLIV+RN SP  LQD+ I+TKLI  LLELLDDPG+VGDEASFA SSLIAEKED+QK
Sbjct: 243 LACMCLIVVRNTSPGCLQDLAIRTKLILILLELLDDPGQVGDEASFALSSLIAEKEDLQK 302

Query: 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA 240
           LAFE N +DKL NHLQKGSL  +RF+GILLALAD+CSKLE CRSR L+LQV+  V+DAL 
Sbjct: 303 LAFEGNAIDKLCNHLQKGSLQAKRFQGILLALADLCSKLENCRSRFLALQVMNSVIDALT 362

Query: 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI 300
           HDS +VR+AAC+CLRSVSRS+KNLSAG+FMNET+VIPLV+LL DTST+VQVAALGAISNI
Sbjct: 363 HDSGEVRAAACICLRSVSRSVKNLSAGNFMNETVVIPLVQLLSDTSTSVQVAALGAISNI 422

Query: 301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360
           VVDFTTR+S F++ GGVK LVQLSKSMD TIRLN++  LRNL+FLA+++CKE IF+ELTA
Sbjct: 423 VVDFTTRKSIFMQCGGVKQLVQLSKSMDPTIRLNSVWGLRNLMFLADNRCKEGIFLELTA 482

Query: 361 SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 420
           SLLASLICDPEPSVQ QAL LV NLVDG INSVEY+F ED IIL AVG+QL+   KAE+ 
Sbjct: 483 SLLASLICDPEPSVQVQALGLVCNLVDGCINSVEYVFVEDSIILQAVGKQLQSTLKAEVG 542

Query: 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
           IQGMYVL NVATG E HKEAVM QL  +A N  Q  IIKFLQSNDSRLRTAAVW VLNLT
Sbjct: 543 IQGMYVLSNVATGNEFHKEAVMHQLFPQAGNSTQPIIIKFLQSNDSRLRTAAVWTVLNLT 602

Query: 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530
              S G+ GR VKL  AGI+S +KNM NDPCLDVKLRV+T L Q  +F D
Sbjct: 603 FPGSLGAYGRFVKLCSAGILSQIKNMANDPCLDVKLRVRTVLGQSLTFGD 652

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104149|ref|XP_002313338.1| predicted protein [Populus trichocarpa] gi|222849746|gb|EEE87293.1| predicted protein [Populus trichocarpa]

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/532 (70%), Positives = 453/532 (85%), Gaps = 1/532 (0%)

Query: 1   MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 60
           MIYQSK+APKY+F+QE+NMEFL+SL+N+E ENV+GLGASII+HSC+TS EQ+ L DAGVL
Sbjct: 135 MIYQSKLAPKYEFVQEKNMEFLISLINSECENVTGLGASIITHSCETSAEQRALCDAGVL 194

Query: 61  KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRL 120
           K+L SLL GSL QRD+SLES+ T+ KNNPE VS+FVGP++G  LS IIE+ KDR+ARTRL
Sbjct: 195 KKLISLLEGSLSQRDSSLESLGTVLKNNPESVSKFVGPESGSALSSIIELTKDRYARTRL 254

Query: 121 LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
           LA +CLIVIRNASP YLQD+GIK KL+  LLELLDDPG+VGDEA F FSSL+A KED+QK
Sbjct: 255 LACMCLIVIRNASPNYLQDIGIKAKLVYLLLELLDDPGQVGDEAPFVFSSLVAGKEDLQK 314

Query: 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA 240
           LAFE + ++K  N LQKG +HP+R +GILLALAD+CSKLE CR   LSL+VL  V+DAL 
Sbjct: 315 LAFEDSAINKFCNQLQKGQVHPKRLQGILLALADLCSKLESCRLTFLSLKVLNQVIDALT 374

Query: 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI 300
           HD ++VR++AC+CLRSV+RSIKNL  G FMNE +VI L+RLLDD S +VQVAALGAISNI
Sbjct: 375 HDCANVRTSACICLRSVTRSIKNLCTGYFMNEMLVISLIRLLDDPSVSVQVAALGAISNI 434

Query: 301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360
           VVDFTTR+STFI+ GG+K LVQL+KSMDST+R NAL AL+N++FLA+D+CKE IF+ELT 
Sbjct: 435 VVDFTTRKSTFIQCGGIKQLVQLTKSMDSTVRFNALWALKNMMFLADDRCKEGIFLELTG 494

Query: 361 SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 420
           SLLASLICDPEP VQEQALALVRNLVDG I S+EY+FAEDGI+LDAVGRQL   S  E+ 
Sbjct: 495 SLLASLICDPEPCVQEQALALVRNLVDGCIKSIEYVFAEDGILLDAVGRQLHNVSD-EVG 553

Query: 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
           IQGMY+LGNVA+G E HKEAVM QLL +A+N AQS +IKFLQS+DSRLRTAA+W ++NLT
Sbjct: 554 IQGMYLLGNVASGNEFHKEAVMRQLLAQADNGAQSFVIKFLQSSDSRLRTAALWVIVNLT 613

Query: 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSL 532
             S PG+ GRLV+L +AGI+S ++NMV+D CLDVKLRV+T + Q  +F D L
Sbjct: 614 FPSCPGAFGRLVQLKNAGIISQIRNMVHDSCLDVKLRVRTVITQSMTFGDGL 665

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805930|emb|CAN74401.1| hypothetical protein VITISV_043630 [Vitis vinifera]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/530 (71%), Positives = 432/530 (81%), Gaps = 18/530 (3%)

Query: 1   MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 60
           MIYQSK+APKYDFLQE+NMEFLLSLLN+E+ENV+GLGASII+HSC+TS EQ  L DAGVL
Sbjct: 123 MIYQSKLAPKYDFLQEKNMEFLLSLLNSENENVTGLGASIITHSCETSAEQNALCDAGVL 182

Query: 61  KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRL 120
           K+L  LL GSL QRDASLESIAT+ K+NPEVVS+FVGP+ GR LS + E+ KDR+ RTRL
Sbjct: 183 KKLIGLLQGSLSQRDASLESIATVIKSNPEVVSKFVGPENGRALSAVTELTKDRYPRTRL 242

Query: 121 LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
           LA +CLIV+RN SP  LQD+ I+TKLI  LLELLDDPG+VGDEASFA SSLIAEKED+QK
Sbjct: 243 LACMCLIVVRNTSPGCLQDLAIRTKLILILLELLDDPGQVGDEASFALSSLIAEKEDLQK 302

Query: 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA 240
           LAFE N +DKL NHLQKGSL  +RF+GILLALAD+CSKLE CRSR L+LQV+  V+DAL 
Sbjct: 303 LAFEGNAIDKLCNHLQKGSLQAKRFQGILLALADLCSKLENCRSRFLALQVMNSVIDALT 362

Query: 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI 300
           HDS +VR+AAC+CLRSVSRS+K                  LL DTST+VQVAALGAISNI
Sbjct: 363 HDSGEVRAAACICLRSVSRSVK------------------LLSDTSTSVQVAALGAISNI 404

Query: 301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360
           VVDFTTR+S F++ GGVK LVQLSKSMD TIRLN++  LRNL+FLA+++CKE IF+ELTA
Sbjct: 405 VVDFTTRKSIFMQCGGVKQLVQLSKSMDPTIRLNSVWGLRNLMFLADNRCKEGIFLELTA 464

Query: 361 SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 420
           SLLASLICDPEPSVQ QAL LV NLVDG INSVEY+F ED IIL AVG+QL+   KAE+ 
Sbjct: 465 SLLASLICDPEPSVQVQALGLVCNLVDGCINSVEYVFVEDSIILQAVGKQLQSTLKAEVG 524

Query: 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
           IQGMYVL NVATG E HKEAVM QL  +A N  Q  IIKFLQSNDSRLRTAAVW VLNLT
Sbjct: 525 IQGMYVLSNVATGNEFHKEAVMHQLFPQAGNSTQPIIIKFLQSNDSRLRTAAVWTVLNLT 584

Query: 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530
              S G+ GR VKL  AGI+S +KNM NDPCLDVKLRV+T L Q  +F D
Sbjct: 585 FPGSLGAYGRFVKLCSAGILSQIKNMANDPCLDVKLRVRTVLGQSLTFGD 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499477|ref|XP_003518566.1| PREDICTED: armadillo repeat-containing protein 8-like [Glycine max]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/530 (66%), Positives = 433/530 (81%)

Query: 1   MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 60
           MIYQS +APKYDF +E++M+FLLSLL + +EN++GLGASI+ HSC+   EQ +L  AG L
Sbjct: 122 MIYQSNLAPKYDFFKEQDMQFLLSLLKSGNENLTGLGASIVIHSCEKRDEQNMLCCAGAL 181

Query: 61  KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRL 120
           + L SLL GSL QRD+SLES+A I KNNPEVV +FV    GR LS +IE+ KDR++RTRL
Sbjct: 182 ETLISLLDGSLSQRDSSLESLAAILKNNPEVVYKFVDLQNGRVLSSVIELTKDRYSRTRL 241

Query: 121 LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
           LA LCLI ++N+S CYLQD+GIK KLI+ LLELLD+ G+VGD ASFAFSSL+AEKED+QK
Sbjct: 242 LACLCLICVKNSSSCYLQDIGIKAKLIHILLELLDESGQVGDSASFAFSSLVAEKEDLQK 301

Query: 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA 240
           LAFE N +DK  +HLQ  +LHP+R EGI LALAD+CSKLECCRS+ LSLQVL ++VD+L 
Sbjct: 302 LAFEANAIDKFNSHLQNCALHPKRLEGIFLALADLCSKLECCRSKFLSLQVLNILVDSLT 361

Query: 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI 300
           HD ++VR+AAC+CL+SVSRSIKNLSAG FMNE I+ PLVRLL D ST+VQVAALGAISNI
Sbjct: 362 HDDANVRTAACICLKSVSRSIKNLSAGYFMNERIIAPLVRLLSDLSTSVQVAALGAISNI 421

Query: 301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360
           V+DFT ++STF+  GGVK L+QL+KSMDS++RLNA+ ALRN++FLA+  CKE IF ELT 
Sbjct: 422 VIDFTPQKSTFMECGGVKELIQLTKSMDSSLRLNAVLALRNMVFLADKMCKEGIFKELTV 481

Query: 361 SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 420
           S +ASLICDPEPSVQEQALALV N VDG I+ VEY FAEDGIILDAV RQL+ +SK EI 
Sbjct: 482 SSVASLICDPEPSVQEQALALVCNFVDGCIDCVEYAFAEDGIILDAVARQLKKSSKIEIG 541

Query: 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
           IQGMY+L N+A+G ESH+EA+M  L  +AEN + S   +FLQSNDS LRT+AVW ++NLT
Sbjct: 542 IQGMYLLSNIASGNESHREAIMQLLFSKAENVSHSFFYQFLQSNDSCLRTSAVWVIVNLT 601

Query: 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530
             +SPG  GR+VKL + GIVS +K MVNDPC+DVKLR + AL Q  +F D
Sbjct: 602 FPASPGVFGRVVKLRNVGIVSQIKKMVNDPCMDVKLRARQALGQIITFGD 651

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442531|ref|XP_004139035.1| PREDICTED: armadillo repeat-containing protein 8-like [Cucumis sativus] gi|449476065|ref|XP_004154630.1| PREDICTED: armadillo repeat-containing protein 8-like [Cucumis sativus]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/532 (66%), Positives = 434/532 (81%)

Query: 1   MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 60
           MIYQSK+APK+DFLQ+EN +FLLSLLN+++ENV+GLGASII HSC+T  EQK L D GVL
Sbjct: 122 MIYQSKLAPKHDFLQQENTKFLLSLLNSQNENVTGLGASIIVHSCETIAEQKALHDGGVL 181

Query: 61  KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRL 120
           ++L  LL GSL QRDASLESIATIFKNN E +++F+ P     L+ IIE++KDR  +TRL
Sbjct: 182 EKLIDLLDGSLSQRDASLESIATIFKNNVEAIARFMQPGREDCLNYIIELLKDRNPKTRL 241

Query: 121 LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
           LA +CLIVIRN+SPCY QD+GIK KLI++LLELLD P +VGDEA F FS+LIAEKE++QK
Sbjct: 242 LACVCLIVIRNSSPCYFQDIGIKMKLIHSLLELLDSPDQVGDEAPFVFSTLIAEKEELQK 301

Query: 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA 240
           LAFE N +DKLYNHLQK  L PRRF+G+LLA + +CSKLE CRSR LSLQV+ +V+DA+ 
Sbjct: 302 LAFEANAIDKLYNHLQKDQLSPRRFQGMLLAFSHLCSKLESCRSRFLSLQVMNIVIDAIK 361

Query: 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI 300
           H+SSD+R AAC CLRSVSRSIKNLSAG FMNE +V+P+VRLL D    VQ+AALGAISNI
Sbjct: 362 HESSDIRIAACTCLRSVSRSIKNLSAGYFMNEAVVLPIVRLLHDPCNDVQLAALGAISNI 421

Query: 301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360
           VV+F+T+RS FI  GGVK LV+LSKSMD  IRLNAL ALRNL+FL    CKE IFMELTA
Sbjct: 422 VVEFSTKRSIFIGCGGVKELVRLSKSMDLEIRLNALWALRNLMFLTNIMCKEAIFMELTA 481

Query: 361 SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 420
           SLLASL+CDPEPS+QE A+ALVRNL+DG  +S+EY+FAED I+L+ +G+QL+  S  EI 
Sbjct: 482 SLLASLVCDPEPSIQEHAMALVRNLIDGCEDSIEYVFAEDAIVLNTIGQQLQNISTDEIG 541

Query: 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
           +QGMYVL NVA+G E HKE VM QL  R ++  +S ++KFLQS++S+LR A +WA++NLT
Sbjct: 542 VQGMYVLCNVASGNEFHKEGVMKQLFPRGDDVTRSFVVKFLQSDNSQLRIAVIWAIINLT 601

Query: 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSL 532
             SSP +  R+ KL +AGIVS +KNMVNDPCLDVKLRV+T L Q  +F D +
Sbjct: 602 LPSSPRALDRVTKLRNAGIVSQIKNMVNDPCLDVKLRVRTVLGQLIAFGDGI 653

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569585|ref|XP_003552979.1| PREDICTED: armadillo repeat-containing protein 8-like [Glycine max]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/531 (68%), Positives = 430/531 (80%)

Query: 1   MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 60
           MIYQS +APKYDF QEENM+FLLSLL +E+EN++GLGA I+ HSCKT  EQ +L  AGVL
Sbjct: 116 MIYQSMLAPKYDFFQEENMQFLLSLLKSENENLTGLGAGIVIHSCKTIGEQNILCHAGVL 175

Query: 61  KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRL 120
           ++LTSLL GSL QRDASLES+A I ++NP  VS+FV   +GR L  + E+ KDR+ RTRL
Sbjct: 176 EKLTSLLEGSLSQRDASLESLAAIIRDNPVSVSEFVELHSGRALHSVTELTKDRYPRTRL 235

Query: 121 LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
           LA LCLI ++N+S CYLQDVGIKTKL+  LLELLDD G+VGDEASFAFS LIAEKED+QK
Sbjct: 236 LACLCLISVKNSSTCYLQDVGIKTKLVYILLELLDDSGQVGDEASFAFSRLIAEKEDLQK 295

Query: 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA 240
           LAFE N ++K    LQK  +HP+R EG+ LALAD+CSKLECCRS  LSLQVL LVVDAL 
Sbjct: 296 LAFEANAINKFNCLLQKRPVHPKRLEGVFLALADLCSKLECCRSSFLSLQVLNLVVDALT 355

Query: 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI 300
           H+ + VR+AAC+CLRSVSRSIKNLSAG FMNE +V PLV+LL D ST+VQVAALGAISNI
Sbjct: 356 HEDASVRTAACICLRSVSRSIKNLSAGRFMNERVVFPLVQLLSDLSTSVQVAALGAISNI 415

Query: 301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360
           VVDF   +STFI+ GG+K LVQL+KSMDS++RLNA+ ALRN++FLA+  CKE IF+ELTA
Sbjct: 416 VVDFMPHKSTFIQCGGIKELVQLTKSMDSSLRLNAVWALRNMVFLADKICKEGIFVELTA 475

Query: 361 SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 420
           S +ASLICDPEPSVQEQALALVRN VDG + SVE+ FAEDGIILDAVGRQL+ +SK EI 
Sbjct: 476 SSMASLICDPEPSVQEQALALVRNFVDGCVYSVEHAFAEDGIILDAVGRQLQKSSKIEIG 535

Query: 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
           IQGMYVL N+A+G E HKEAVM  L  + EN + S   +FLQS+DSRLRTAAVW ++NLT
Sbjct: 536 IQGMYVLNNIASGNEFHKEAVMQLLFPQDENGSHSFFEQFLQSHDSRLRTAAVWVIVNLT 595

Query: 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 531
             +SPG+ GR+V L   GIVS +K M ND C+DVKLR + AL Q  +F DS
Sbjct: 596 FPASPGAFGRIVNLRSFGIVSRIKKMSNDSCMDVKLRARLALGQILTFGDS 646

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544884|ref|XP_002513503.1| conserved hypothetical protein [Ricinus communis] gi|223547411|gb|EEF48906.1| conserved hypothetical protein [Ricinus communis]

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/532 (70%), Positives = 444/532 (83%)

Query: 1   MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 60
           MIYQSK+ PKY+FLQE+ MEFL+SLLN+ESENV+GLGA+II+HSC+TS EQ  L DAGVL
Sbjct: 143 MIYQSKLTPKYEFLQEKRMEFLISLLNSESENVTGLGATIITHSCETSAEQIALCDAGVL 202

Query: 61  KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRL 120
           KRL SLL GSL QRDASLES+A +F+NNP+V+S+ +  + GR L+ II +  DR+ RTRL
Sbjct: 203 KRLLSLLEGSLSQRDASLESLAAVFRNNPDVISESLREENGRALTSIIGLTNDRYPRTRL 262

Query: 121 LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
           LA +CLIVI N+SPCYLQD+ IKTKLI+ LLELLDD G+VGDEA F FSSLI EKED+Q+
Sbjct: 263 LACMCLIVIMNSSPCYLQDISIKTKLIHLLLELLDDHGQVGDEAPFVFSSLIMEKEDLQQ 322

Query: 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA 240
           LAFE N +DK +NHL+   LHP+RF+GILLALAD+CSKLE CRSR LSL+VLK V DAL 
Sbjct: 323 LAFEANALDKFFNHLKNSQLHPKRFQGILLALADLCSKLETCRSRFLSLEVLKSVADALD 382

Query: 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI 300
           HDS+DVR AAC+C+RSV+RSIKNL AG FMNE +VIPLV LLDD S  VQVAAL AISNI
Sbjct: 383 HDSNDVRIAACICIRSVTRSIKNLCAGYFMNEVLVIPLVWLLDDPSVTVQVAALSAISNI 442

Query: 301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360
           +VDFTTR+STF+R GGVK L+ LSKSMDS +RLNAL AL+N++FLA+++ KE  FME+TA
Sbjct: 443 LVDFTTRKSTFVRCGGVKQLIYLSKSMDSAVRLNALCALKNMVFLADNEFKERTFMEITA 502

Query: 361 SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 420
           SLLAS ICD +P VQEQALALVRNLVDG I+ ++Y FAE+GIILDAVGR+L  ASKAEI 
Sbjct: 503 SLLASFICDHDPFVQEQALALVRNLVDGCISCLDYAFAENGIILDAVGRELTNASKAEIG 562

Query: 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
           IQGMYVL NVA+G E HKEAVM++LL + + + QS I+KFLQSNDSRLRTAAVWAV+NLT
Sbjct: 563 IQGMYVLANVASGNEFHKEAVMNKLLPQVDKETQSFIVKFLQSNDSRLRTAAVWAVVNLT 622

Query: 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSL 532
             SSPG+  RLVKL  AGIV  ++NMVND CLDVKLR++T L Q  +F D L
Sbjct: 623 FPSSPGAFNRLVKLRSAGIVPQIRNMVNDSCLDVKLRIRTVLSQVITFGDGL 674

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524425|ref|XP_003530829.1| PREDICTED: armadillo repeat-containing protein 8-like [Glycine max]

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/531 (67%), Positives = 427/531 (80%)

Query: 1   MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 60
           MIYQS +APKYDF QEE M+FLLSLL +E+EN++GLGA I+ HSCKT  EQ +L  AGVL
Sbjct: 142 MIYQSTLAPKYDFFQEETMQFLLSLLESENENLTGLGAGIVIHSCKTIGEQTILCHAGVL 201

Query: 61  KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRL 120
           ++LTSLL  SL QRDASLES+A I ++NP  VS+FV    GR L  + E+ KDR+ RTRL
Sbjct: 202 EKLTSLLDSSLSQRDASLESLAAIIRDNPAAVSEFVELHGGRALHSVAELTKDRYPRTRL 261

Query: 121 LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
           LA LCLI ++N+S CYLQD+GIKTKL+  LLELLDD G+VGDEASFAFSSLIAEKED+QK
Sbjct: 262 LACLCLISVKNSSTCYLQDIGIKTKLVYILLELLDDSGQVGDEASFAFSSLIAEKEDLQK 321

Query: 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA 240
           LAFE N ++K    LQK  + P+R EG+ LALAD+CSKLECCRS  LSLQVL LVVDAL 
Sbjct: 322 LAFEANAINKFNCLLQKHPVQPKRLEGVFLALADLCSKLECCRSSFLSLQVLNLVVDALT 381

Query: 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI 300
           H+ + VR+AAC+CLRSVSRSIKNLSAG FMNE +V PLV+LL D ST+VQVAALGAISNI
Sbjct: 382 HEDASVRTAACICLRSVSRSIKNLSAGRFMNERVVCPLVQLLSDLSTSVQVAALGAISNI 441

Query: 301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360
           VVDF   +STFI  GG+K LVQL+KSMDS++RLNA+ ALRN++FLA+  CKE IF+ELTA
Sbjct: 442 VVDFMPHKSTFIECGGIKELVQLTKSMDSSLRLNAVWALRNMVFLADKICKEGIFVELTA 501

Query: 361 SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 420
           S +ASLICDPEPSVQEQALALVRN VDG + SVE+ FAEDGIILDAVGRQL+ ++K EI 
Sbjct: 502 SSMASLICDPEPSVQEQALALVRNFVDGCVYSVEHAFAEDGIILDAVGRQLKKSTKIEIG 561

Query: 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
           IQGMYVL N+A+G E HKEAVM  L  + EN + S   +FLQS+DSRLRTAAVW V+NLT
Sbjct: 562 IQGMYVLSNIASGNEFHKEAVMQLLFPQDENVSHSFFEQFLQSHDSRLRTAAVWVVVNLT 621

Query: 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 531
             ++PG+ GR+V L   GIVS +K MVND C+DVKLR + AL Q  +F DS
Sbjct: 622 FPANPGAFGRIVNLRSFGIVSRIKKMVNDSCMDVKLRARLALGQILTFGDS 672

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223823|ref|NP_175546.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gi|20260482|gb|AAM13139.1| unknown protein [Arabidopsis thaliana] gi|30725506|gb|AAP37775.1| At1g51350 [Arabidopsis thaliana] gi|332194533|gb|AEE32654.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 310/532 (58%), Positives = 417/532 (78%), Gaps = 1/532 (0%)

Query: 1   MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 60
           MI+QS  APKYDFLQE+NMEFL SLLN+E+ENVSGLGASII+H+C TS+EQ++L +AGVL
Sbjct: 134 MIFQSNQAPKYDFLQEKNMEFLFSLLNSENENVSGLGASIIAHACGTSVEQRVLCEAGVL 193

Query: 61  KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRL 120
           ++L  LL GSL QR+A LES+AT+ KNNPE VS FVG ++G+  + + E+ KDR+ RTRL
Sbjct: 194 EKLVILLDGSLSQREACLESLATVLKNNPEAVSDFVGLESGKYFNSVTELTKDRYPRTRL 253

Query: 121 LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
           L+ LCL+VI N SP Y  ++G K+ LI  LLELL+DPG+ GD+A+   S LIAEKED+Q+
Sbjct: 254 LSCLCLVVIYNTSPSYFINMGTKSSLITTLLELLNDPGQSGDDAALGLSCLIAEKEDLQQ 313

Query: 181 LAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL 239
           LA+E + +  +   L+ GS L  +R +G+ L+LA++CSKLE CR   LSLQVL L+ DAL
Sbjct: 314 LAYEADAIKNIVEILKTGSELQSKRLQGLFLSLAELCSKLEDCRCSFLSLQVLDLLTDAL 373

Query: 240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 299
            H  +DVR+AAC+C R+ +RS+K+LSAG F ++ +++PLV+LL D S++VQVA LGA++N
Sbjct: 374 RHKDADVRAAACICFRNAARSVKSLSAGRFNSDHVMLPLVQLLHDPSSSVQVAVLGALNN 433

Query: 300 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT 359
           IV+DF++ +S+FI  GG+K L +LSKSMD   R +ALRALRNL+FLA+ K KE  + ++ 
Sbjct: 434 IVMDFSSPKSSFIEYGGIKQLTELSKSMDPNTRCSALRALRNLMFLADIKRKELFYSDVK 493

Query: 360 ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI 419
           A  LA LI DPEP VQEQALAL+RNLVDG I+S+E++F EDG+ILD VGRQLR A +A++
Sbjct: 494 AQGLACLISDPEPPVQEQALALLRNLVDGCISSIEFVFDEDGLILDTVGRQLRKAPQAQM 553

Query: 420 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNL 479
            IQGMYVL NVA+G E HKEAVM+QL  +A+  +++ ++KFLQS++S+LR+AAVW ++NL
Sbjct: 554 AIQGMYVLTNVASGTELHKEAVMEQLFPQAKAGSENFMLKFLQSDESQLRSAAVWTIINL 613

Query: 480 TCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 531
              SSPG+  R VKL +AGI+  +KNMVND CLDVK+R++T L Q  SF D+
Sbjct: 614 ISPSSPGAFDRHVKLRNAGIIPQLKNMVNDACLDVKIRIRTVLGQSMSFGDN 665

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847504|ref|XP_002891633.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297337475|gb|EFH67892.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 306/532 (57%), Positives = 416/532 (78%), Gaps = 1/532 (0%)

Query: 1   MIYQSKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL 60
           MI+QS  APKYDFLQE+NMEFL SLLN+E+ENVSGLGASII+H+C TS+EQ++L +AGVL
Sbjct: 134 MIFQSNQAPKYDFLQEKNMEFLFSLLNSENENVSGLGASIIAHACGTSVEQRVLCEAGVL 193

Query: 61  KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRL 120
           ++L  LL GS  QR+A LES+AT+ KNNPE VS FVG ++G+  + + E+ KDR+ RTRL
Sbjct: 194 EKLVILLDGSFSQREACLESLATVLKNNPEAVSDFVGLESGKYFNSVTELTKDRYPRTRL 253

Query: 121 LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
           L+ LCL+VI N SP Y  ++G K+ LI  LLELL+DPG+ GD+A+   S LIAEKED+Q+
Sbjct: 254 LSCLCLVVIYNTSPSYFVNMGTKSSLITTLLELLNDPGQSGDDAALGLSCLIAEKEDLQQ 313

Query: 181 LAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL 239
           LA+E + +  + + L+ GS L PRR +G+ L+LA++CSKLE CR   LSLQVL L+ +AL
Sbjct: 314 LAYEADAIKNIVDILKTGSELQPRRLQGLFLSLAELCSKLEDCRCSFLSLQVLDLLTNAL 373

Query: 240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 299
            H  +DVR+AAC+C R+ ++S+K+LSAG F ++  ++PLV+LL D S++VQVA LGA+SN
Sbjct: 374 RHKDADVRAAACICFRNAAQSVKSLSAGRFNSDHAMLPLVQLLHDPSSSVQVAVLGALSN 433

Query: 300 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT 359
           IV+DF++ +S+FI  GG+K L++LSKSMD   R +ALRALRNL+FLA++K KE  + ++ 
Sbjct: 434 IVLDFSSPKSSFIEYGGIKQLIELSKSMDPIARCSALRALRNLMFLADNKRKELFYSDVK 493

Query: 360 ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI 419
           A   A LI DPEP VQEQALAL+RNLVDG I+S+E++F EDG+ILD VGRQLR A +A++
Sbjct: 494 AQGFACLISDPEPPVQEQALALLRNLVDGCISSIEFVFDEDGLILDTVGRQLRKAPQAQM 553

Query: 420 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNL 479
            IQGMYVL NVA+G E HKEAVM QL  +A+ ++++ ++ FLQS++S+LR+A VW ++NL
Sbjct: 554 AIQGMYVLTNVASGTELHKEAVMQQLFPQAKAESENFMLNFLQSDESQLRSATVWTIINL 613

Query: 480 TCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 531
              SSPG+  R VKL +AG++  +KNMVND CLDVK+R++T L Q  SF D+
Sbjct: 614 ISPSSPGAFDRHVKLRNAGVIPQLKNMVNDACLDVKIRIRTVLGQSMSFGDN 665

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
TAIR|locus:2008246	666	AT1G51350 "AT1G51350" [Arabido	0.996	0.797	0.528	2.6e-143
DICTYBASE|DDB_G0270626	702	armc8 "armadillo repeat-contai	0.885	0.672	0.295	1.9e-42
MGI|MGI:1921375	673	Armc8 "armadillo repeat contai	0.641	0.508	0.260	8.3e-24
UNIPROTKB|F1SL67	289	LOC100738777 "Uncharacterized	0.523	0.965	0.277	2.5e-22
ZFIN|ZDB-GENE-061027-88	674	armc8 "armadillo repeat contai	0.562	0.445	0.285	4.5e-21
POMBASE|SPAC26H5.04	789	SPAC26H5.04 "vacuolar import a	0.448	0.302	0.265	1.1e-15
ASPGD|ASPL0000033305	993	AN5157 [Emericella nidulans (t	0.140	0.075	0.337	6.2e-09
UNIPROTKB|G4N632	1062	MGG_08557 "Armadillo repeat pr	0.260	0.130	0.244	1.1e-07
WB|WBGene00002073	531	ima-2 [Caenorhabditis elegans	0.414	0.416	0.259	2e-06
UNIPROTKB|P91276	531	ima-2 "Importin subunit alpha-	0.414	0.416	0.259	2e-06

TAIR|locus:2008246 AT1G51350 "AT1G51350" [Arabidopsis thaliana (taxid:3702)]

 Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
 Identities = 281/532 (52%), Positives = 383/532 (71%)

Query:     1 MIYQSKMAPKYDFLQXXXXXXXXXXXXXXXXXXXXXGASIISHSCKTSLEQKLLFDAGVL 60
             MI+QS  APKYDFLQ                     GASII+H+C TS+EQ++L +AGVL
Sbjct:   134 MIFQSNQAPKYDFLQEKNMEFLFSLLNSENENVSGLGASIIAHACGTSVEQRVLCEAGVL 193

Query:    61 KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRL 120
             ++L  LL GSL QR+A LES+AT+ KNNPE VS FVG ++G+  + + E+ KDR+ RTRL
Sbjct:   194 EKLVILLDGSLSQREACLESLATVLKNNPEAVSDFVGLESGKYFNSVTELTKDRYPRTRL 253

Query:   121 LASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
             L+ LCL+VI N SP Y  ++G K+ LI  LLELL+DPG+ GD+A+   S LIAEKED+Q+
Sbjct:   254 LSCLCLVVIYNTSPSYFINMGTKSSLITTLLELLNDPGQSGDDAALGLSCLIAEKEDLQQ 313

Query:   181 LAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL 239
             LA+E + +  +   L+ GS L  +R +G+ L+LA++CSKLE CR   LSLQVL L+ DAL
Sbjct:   314 LAYEADAIKNIVEILKTGSELQSKRLQGLFLSLAELCSKLEDCRCSFLSLQVLDLLTDAL 373

Query:   240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 299
              H  +DVR+AAC+C R+ +RS+K+LSAG F ++ +++PLV+LL D S++VQVA LGA++N
Sbjct:   374 RHKDADVRAAACICFRNAARSVKSLSAGRFNSDHVMLPLVQLLHDPSSSVQVAVLGALNN 433

Query:   300 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXEDKCKEEIFMELT 359
             IV+DF++ +S+FI  GG+K L +LSKSMD                  + K KE  + ++ 
Sbjct:   434 IVMDFSSPKSSFIEYGGIKQLTELSKSMDPNTRCSALRALRNLMFLADIKRKELFYSDVK 493

Query:   360 ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI 419
             A  LA LI DPEP VQEQALAL+RNLVDG I+S+E++F EDG+ILD VGRQLR A +A++
Sbjct:   494 AQGLACLISDPEPPVQEQALALLRNLVDGCISSIEFVFDEDGLILDTVGRQLRKAPQAQM 553

Query:   420 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNL 479
              IQGMYVL NVA+G E HKEAVM+QL  +A+  +++ ++KFLQS++S+LR+AAVW ++NL
Sbjct:   554 AIQGMYVLTNVASGTELHKEAVMEQLFPQAKAGSENFMLKFLQSDESQLRSAAVWTIINL 613

Query:   480 TCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 531
                SSPG+  R VKL +AGI+  +KNMVND CLDVK+R++T L Q  SF D+
Sbjct:   614 ISPSSPGAFDRHVKLRNAGIIPQLKNMVNDACLDVKIRIRTVLGQSMSFGDN 665

GO:0008150 "biological_process" evidence=ND

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

DICTYBASE|DDB_G0270626 armc8 "armadillo repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 453 (164.5 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 147/498 (29%), Positives = 252/498 (50%)

Query:    38 ASIISHSCKTSL--EQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVS 93
             +S  S+S   SL   Q  +   G L  + S+L    S IQ +A L  I+ + ++N  + S
Sbjct:   215 SSSSSNSINHSLLQYQNFVHIHGGLNSVMSILASPRSKIQ-EACLYVISWLTRDNVPL-S 272

Query:    94 QFVGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLE 152
              F+  D  R L  II + K ++  + +LLA+ CL    N S        +K  ++  ++ 
Sbjct:   273 TFIVNDERRILDIIIYLFKKNKSPKIKLLATNCLCNF-NQSKTLPITCSLKN-ILPIIIR 330

Query:   153 LLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL 212
             L+ +   V +EA    + L+A+ ED+Q++A E   + +L   L+  +   R  E  L A+
Sbjct:   331 LMSEEESVKEEAPMVLARLVADNEDLQRIASEAEAISRLSIFLKDSNSSERLKENSLSAI 390

Query:   213 ADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNE 272
             A +CS  E  R + +  +++  ++ +L   +  +R+AAC C +S+SRSIK L    F + 
Sbjct:   391 AVLCSSREDSRKQVVDAKIIPQIISSLNSSNYAIRAAACNCTKSLSRSIKQLRTSLF-DC 449

Query:   273 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTX 331
             TI  PL++LLDD S  V+V+A   + N+V+DF+  +   +  G +  LV L++ S D   
Sbjct:   450 TIATPLLKLLDDQSLEVRVSASATLCNLVLDFSPMKQAIMDNGIIVKLVDLTQDSNDFKI 509

Query:   332 XXXXXXXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV-DGRI 390
                            E   KE++  EL    L  LI D +PS+ EQALA++RNL      
Sbjct:   510 RLNCIWALKNLLYMAEPSLKEQVMKELGYQRLIELIKDTDPSISEQALAVLRNLAFKDND 569

Query:   391 NSVEYIFAEDGIILDAVGRQLRIASKA-EIEIQGMYVLGNVATGKESHKEAVMDQLLLRA 449
             + +  +   D ++      + R+AS   EI  Q ++V+ N+A G E  + +VM+  ++  
Sbjct:   570 HLISELHFHDQLVPTI---ENRLASNIPEIIKQTLFVICNIA-GNEKIRSSVMNSSIV-- 623

Query:   450 ENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC-SSSPGSSGRLVKLHDAGIVSHVKNMVN 508
              N+    +I F++     +R A+VW V N+     +  S+ R++K  + G    ++ + +
Sbjct:   624 -NR----LIHFMEHKHCEIRIASVWCVCNIIGPDENSTSASRVLKFKELGYQKKLEMLAD 678

Query:   509 -DPCLDVKLRVKTALEQF 525
              D  ++VK RVKTAL  F
Sbjct:   679 HDSNIEVKDRVKTALTLF 696

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1921375 Armc8 "armadillo repeat containing 8" [Mus musculus (taxid:10090)]

 Score = 269 (99.8 bits), Expect = 8.3e-24, Sum P(2) = 8.3e-24
 Identities = 94/361 (26%), Positives = 165/361 (45%)

Query:   171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLAL-ADMCSKLECCRSRCLSL 229
             LIA   D  K    V+ +  +   L     H          L A + +  E  R + +  
Sbjct:   324 LIAMLADYFKYPSSVSAITDI-KRLDHDLKHAHELRQAAFKLYASLGANDEDIRKKIIET 382

Query:   230 Q-VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 288
             + ++  +V   +  S  VR AA  CL S+SRS++ L   SF +  +  PL+++L +    
Sbjct:   383 ETMMDRIVTGSSESSVKVRLAAVRCLHSLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDE 441

Query:   289 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXED 348
             + V A   + N++++F+  +   +  G V+LL  L++S +                  E 
Sbjct:   442 ILVVASSMLCNLLLEFSPSKEPILESGAVELLCGLTQSENPALRVNGIWALMNMAFQAEQ 501

Query:   349 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI-ILDAV 407
             K K +I   L+   L  L+ D + +V  + L L+RNL+  R + ++ I +  G  I+ AV
Sbjct:   502 KIKADILRSLSTEQLFRLLSDSDMNVLMKTLGLLRNLLSTRPH-IDKIMSTHGKQIMQAV 560

Query:   408 GRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVM--DQLLLRAENKAQSCIIKFLQSND 465
                L      E++ Q + +L N+A G  + KE +M  D +L +         IK+   + 
Sbjct:   561 TLILEGEHSIEVKEQTLCILANIADGTTA-KELIMTNDDILQK---------IKYYMGHS 610

Query:   466 S-RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ 524
               +L+ AA++ + NLT +   GS  R  KL D GIV  +  +      ++  + KTAL+Q
Sbjct:   611 HVKLQLAAMFCISNLTWNEEEGSQERQDKLRDMGIVDILHKLSQSADSNLCDKAKTALQQ 670

Query:   525 F 525
             +
Sbjct:   671 Y 671

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1SL67 LOC100738777 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 265 (98.3 bits), Expect = 2.5e-22, P = 2.5e-22
 Identities = 82/295 (27%), Positives = 143/295 (48%)

Query:   235 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAAL 294
             +V  L+  S  VR AA  CL S+SRS++ L   SF +  +  PL+++L +    + V A 
Sbjct:     5 IVTGLSESSVKVRLAAVRCLHSLSRSVQQLRT-SFQDHAVWKPLMKVLQNAPDEILVVAS 63

Query:   295 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXEDKCKEEI 354
               + N++++F+  +   +  G V+LL  L++S +                  E K K +I
Sbjct:    64 SMLCNLLLEFSPSKEPILESGAVELLCGLTQSENPALRVNGIWALMNMAFQAEQKIKADI 123

Query:   355 FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI-ILDAVGRQLRI 413
                L+   L  L+ D + +V  + L L+RNL+  R + ++ I +  G  I+ AV   L  
Sbjct:   124 LRSLSTEQLFRLLSDSDLNVLMKTLGLLRNLLSTRPH-IDKIMSTHGKQIMQAVTLILEG 182

Query:   414 ASKAEIEIQGMYVLGNVATGKESHKEAVM--DQLLLRAENKAQSCIIKFLQSNDS-RLRT 470
                 E++ Q + +L N+A G  + KE +M  D +L +         IK+   +   +L+ 
Sbjct:   183 EHNIEVKEQTLCILANIADGTTA-KELIMTNDDILQK---------IKYYMGHSHVKLQL 232

Query:   471 AAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 525
             AA++ + NL  +   GS  R  KL D GIV  +  +   P  ++  + K AL+Q+
Sbjct:   233 AAMFCISNLIWNEEEGSQERQDKLRDMGIVDILHKLSQSPDSNLCDKAKMALQQY 287

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-061027-88 armc8 "armadillo repeat containing 8" [Danio rerio (taxid:7955)]

 Score = 276 (102.2 bits), Expect = 4.5e-21, P = 4.5e-21
 Identities = 91/319 (28%), Positives = 152/319 (47%)

Query:   213 ADMCSKLECCRSRCLSLQ-VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN 271
             A + S  E  R +    + ++  +V  L+  S  VR AA  CL S+SRS++ L   SF +
Sbjct:   367 ASLGSNDEDIRKKITETENMMDRIVSGLSESSIKVRLAAVRCLHSLSRSVQQLRT-SFHD 425

Query:   272 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTX 331
               +  PL++LL +    V V A   + N++++F+  +   +  G ++LL  L++S  S  
Sbjct:   426 HAVWKPLMKLLQNAPDEVLVMASSTLCNLLLEFSPSKEPILESGVIELLCSLTQSDSSAL 485

Query:   332 XXXXXXXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 391
                            + K K EI   L    L  L+ DP+ +V  + L L+RNL+  R +
Sbjct:   486 RVNGIWALMNMAFQADQKVKVEIVRALGTEQLFRLLSDPDTNVLMKTLGLLRNLLSTRPH 545

Query:   392 SVEYIFAEDGI-ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAE 450
              ++ I +  G  I+ AV   L      E++ Q + +L N+A G  + KE +M       +
Sbjct:   546 -IDQIMSSHGKQIMQAVTLILEGEHSIEVKEQTLCILANIADGNTA-KELIMTN-----D 598

Query:   451 NKAQSCIIKFLQSNDS-RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS--HVKNMV 507
             +  Q   IK+   + + +L+ AA + + NL  +   GS  R  KL + G V   H     
Sbjct:   599 DMLQK--IKYYMGHSNVKLQLAATFCISNLIWNEEDGSQERQDKLREMGFVDILHKLTQA 656

Query:   508 NDPCL-DVKLRVKTALEQF 525
             +DP L D   R KTA++Q+
Sbjct:   657 SDPNLCD---RAKTAMQQY 672

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPAC26H5.04 SPAC26H5.04 "vacuolar import and degradation protein Vid28 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 229 (85.7 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 65/245 (26%), Positives = 123/245 (50%)

Query:   206 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 265
             E +LLA+A + +  +  R   +  + L ++++AL  +S+ V+ AAC CL S+SRS+  L 
Sbjct:   420 ESVLLAVAALTTSKDEYRKLIVDAKYLPVIINALKINSNSVKKAACECLLSLSRSVYILR 479

Query:   266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK 325
              G   +  +  PL++LL D  T V+  A  AI N+V+ F+  R  F+    +  L+    
Sbjct:   480 TG-LADADVSEPLIKLLSDPDTRVKSTATSAICNLVLKFSPLREKFLTTNFIDTLISNIS 538

Query:   326 SMDSTXXXXXXXXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 385
             + DS+                ++  + E   ++ AS L  L  D +  VQEQ L ++RN 
Sbjct:   539 TKDSSLRKKTVWVLRHVVFGDDETIQLEPLKKIGASKLVELCNDEDLGVQEQMLQVLRNF 598

Query:   386 VDGRINSVEYIFAEDGIILDAVGRQL--RIASKAEIEIQ-GMYVLGNVATGKESHKEAVM 442
                +  SV+++     + ++ + + L  ++ SK  I I+  +Y+L ++A      +++++
Sbjct:   599 TCQKEESVDFLLKM--VPMELLAKILLEKLESKNPILIEPSIYILVHIAASDGELRDSIL 656

Query:   443 DQLLL 447
              Q  L
Sbjct:   657 RQTKL 661

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0007039 "vacuolar protein catabolic process" evidence=ISO

GO:0034657 "GID complex" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0045721 "negative regulation of gluconeogenesis" evidence=ISO

ASPGD|ASPL0000033305 AN5157 [Emericella nidulans (taxid:162425)]

 Score = 102 (41.0 bits), Expect = 6.2e-09, Sum P(4) = 6.2e-09
 Identities = 28/83 (33%), Positives = 42/83 (50%)

Query:   457 IIKFLQS--NDSR--LRTAAVWAVLNLTCSSS----PGSSGRLVKLHDAGIVSHVKNMVN 508
             +I++L    N S   +R   VW V+NLT         G   R ++L   G++  + ++ +
Sbjct:   911 LIRYLMGYFNHSHRDVRANCVWVVINLTYEDDVHDREGCRKRALELRSIGVLDRLASLEH 970

Query:   509 DPCLDVKLRVKTALEQFNSFDDS 531
             DP LDV+ R KTAL   NS   S
Sbjct:   971 DPDLDVRERTKTALHLVNSLTHS 993

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G4N632 MGG_08557 "Armadillo repeat protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 115 (45.5 bits), Expect = 1.1e-07, Sum P(5) = 1.1e-07
 Identities = 35/143 (24%), Positives = 64/143 (44%)

Query:   237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGA 296
             DA   + ++V  AAC  +R ++RS+  +   +  +  +  PL +LL      VQ AA  A
Sbjct:   627 DAQNKNPTEVLIAACHTIRMLARSVAIIRT-TLQDSGVTDPLFKLLRHPDADVQTAATAA 685

Query:   297 ISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXEDKCKEEIFM 356
             + N++ DF+  R  F+ LG +K+L   + S   +                  + K+    
Sbjct:   686 VCNLLTDFSPMREKFLDLGIMKVLCDHAHSATPSLRLNALWALKHLISGQRPEMKKTCME 745

Query:   357 ELTASLLASLICDPEPSVQEQAL 379
              L  + L  +I +    +++QAL
Sbjct:   746 VLDPNWLTRIIAE---DIEDQAL 765

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00002073 ima-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 142 (55.0 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 62/239 (25%), Positives = 103/239 (43%)

Query:   231 VLKLVVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 289
             +L+ +V AL+ ++  V+  A   L + VS S +   A   +   + IPL+ L    S  +
Sbjct:   133 LLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAA--VEAGVTIPLIHLSVHQSAQI 190

Query:   290 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXEDK 349
                AL A++NI  D +  R   I+  GV+ L+ L + +D                    K
Sbjct:   191 SEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHK 250

Query:   350 CKE---EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA 406
                   E+   L+  L+  L+   +  V++ A   V  L DG    +E +  E G++   
Sbjct:   251 NPHAPLEVLRVLSKGLV-KLVQHTDRQVRQDACWAVSYLTDGPDEQIE-LARESGVLPHV 308

Query:   407 VGRQLRIASKAE-IEIQGMYVLGNVATGKESHKEAV-----MDQLLLRAENKAQSCIIK 459
             V        +AE +    +  LGNVATG +S  +AV     +D++L   E    S I+K
Sbjct:   309 VA----FFKEAENLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVK 363

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051983 "regulation of chromosome segregation" evidence=IMP

GO:0007084 "mitotic nuclear envelope reassembly" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P91276 ima-2 "Importin subunit alpha-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 142 (55.0 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 62/239 (25%), Positives = 103/239 (43%)

Query:   231 VLKLVVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 289
             +L+ +V AL+ ++  V+  A   L + VS S +   A   +   + IPL+ L    S  +
Sbjct:   133 LLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAA--VEAGVTIPLIHLSVHQSAQI 190

Query:   290 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXXXXXXXXXXXEDK 349
                AL A++NI  D +  R   I+  GV+ L+ L + +D                    K
Sbjct:   191 SEQALWAVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHK 250

Query:   350 CKE---EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA 406
                   E+   L+  L+  L+   +  V++ A   V  L DG    +E +  E G++   
Sbjct:   251 NPHAPLEVLRVLSKGLV-KLVQHTDRQVRQDACWAVSYLTDGPDEQIE-LARESGVLPHV 308

Query:   407 VGRQLRIASKAE-IEIQGMYVLGNVATGKESHKEAV-----MDQLLLRAENKAQSCIIK 459
             V        +AE +    +  LGNVATG +S  +AV     +D++L   E    S I+K
Sbjct:   309 VA----FFKEAENLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVK 363

GO:0008565 "protein transporter activity" evidence=IMP

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005643 "nuclear pore" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	533
COG5369	743	COG5369, COG5369, Uncharacterized conserved protei	3e-17
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-14
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-13
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	3e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-06
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	2e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.003

>gnl|CDD|227663 COG5369, COG5369, Uncharacterized conserved protein [Function unknown]

 Score = 85.0 bits (210), Expect = 3e-17
 Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 7/202 (3%)

Query: 248 SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR 307
            A  + L+S+SRS+  L  G  ++  IV  L+  L +    ++      I N VV F+  
Sbjct: 407 VAIVLFLKSMSRSVTFLRTG-LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNL 465

Query: 308 RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI 367
            + F+    + +LV L  S D  ++ N+   LR+L++  +   K +   ++    + S  
Sbjct: 466 GAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYT 525

Query: 368 CDPEPSVQEQALALVRNLV-DGRINS----VEYIFAEDGIILDAVGRQLRIASKAEIEIQ 422
            DP   VQ Q L ++RN   D   N     V         +   +  +    +  EI  +
Sbjct: 526 NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL-E 584

Query: 423 GMYVLGNVATGKESHKEAVMDQ 444
           G Y+L   A   ++    V  Q
Sbjct: 585 GCYILVRNAACDDTLDYIVQSQ 606

Length = 743

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 68.1 bits (167), Expect = 6e-14
 Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 1/113 (0%)

Query: 274 IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL 333
            +  LV LL  +   VQ  A  A+SN+           +  GG+  LVQL KS D  +  
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 386
            AL ALRNL    ED  K  +        L +L+      +Q+ A   + NL 
Sbjct: 68  AALWALRNLAAGPEDN-KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 64.6 bits (158), Expect = 9e-13
 Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 13/119 (10%)

Query: 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI------PLVRLLDD 284
            L  +V  L+    +V+  A   L        NLSAG+  N   V+       LV+LL  
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALS-------NLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 285 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343
               V  AAL A+ N+       +   +  GGV  LV L  S +  I+ NA  AL NL 
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 35/240 (14%)

Query: 261 IKNLSAGSFMNETIVIP------LVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 314
           + N+++G+     +V+        ++LL  T   V+  A+ A+ NI  D    R   ++ 
Sbjct: 139 LTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC 198

Query: 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK------EEIFMELTASLLASLIC 368
           G ++ L+ L  S    I +     LRN  +   + C+      +   +     +LA LI 
Sbjct: 199 GALEPLLGLLLSSAIHISM-----LRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIY 253

Query: 369 DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA--VGRQLRIASKAEIEIQ--GM 424
             +P V   A   +  L DG     E I      +LD    GR + + S    +IQ   +
Sbjct: 254 SRDPEVLVDACWAISYLSDG---PNEKI----QAVLDVGIPGRLVELLSHESAKIQTPAL 306

Query: 425 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS 484
             +GN+ TG +   + +++   L+A           L S    +R  A W + N+T  ++
Sbjct: 307 RSVGNIVTGSDDQTQVIINCGALKA-------FRSLLSSPKENIRKEACWTISNITAGNT 359

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 311 FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA-SLLASLICD 369
            I+ GG+  LV L  S D  ++  A  AL NL     D  +    +E      L  L+  
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQA--VVEAGGLPALVQLLKS 60

Query: 370 PEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 402
            +  V + AL  +RNL  G  ++   +    G+
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV 93

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 209 LLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 268
             AL+++ +         +    L  +V  L  +  +V  AA   LR       NL+AG 
Sbjct: 28  AWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALR-------NLAAGP 80

Query: 269 FMNETIVI------PLVRLLDDTSTAVQVAALGAISNIV 301
             N+ IV+       LV LLD ++  +Q  A GA+SN+ 
Sbjct: 81  EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 6/276 (2%)

Query: 150 LLELLDDPGR-VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI 208
            ++LL      V ++A +A  ++  + E  +    +   ++ L   L   ++H       
Sbjct: 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNA 221

Query: 209 LLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 268
              L+++C             Q L ++   +     +V   AC  +  +S    N    +
Sbjct: 222 TWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS-DGPNEKIQA 280

Query: 269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD 328
            ++  I   LV LL   S  +Q  AL ++ NIV     +    I  G +K    L  S  
Sbjct: 281 VLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK 340

Query: 329 STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388
             IR  A   + N+     ++ +  I   L    L  L+   E  ++++A   + N   G
Sbjct: 341 ENIRKEACWTISNITAGNTEQIQAVIDANL-IPPLIHLLSSAEYKIKKEACWAISNATSG 399

Query: 389 RINSVEYI--FAEDGIILDAVGRQLRIASKAEIEIQ 422
            +N  + I      G I   +   L +     IE+ 
Sbjct: 400 GLNRPDIIRYLVSQGFI-KPLCDLLDVVDNKIIEVA 434

Length = 526

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNL 342
           I  G V  LVQL  S D  ++  A  AL NL
Sbjct: 9   IEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344
           +  GG+  LV+L KS D  +   A  AL NL  
Sbjct: 9   VDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	533
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.91
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.89
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.79
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.78
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.75
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.74
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.74
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.74
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.73
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.72
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.71
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.71
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.7
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.69
PRK09687	280	putative lyase; Provisional	99.69
COG5369	743	Uncharacterized conserved protein [Function unknow	99.67
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.67
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.66
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.65
PRK09687	280	putative lyase; Provisional	99.6
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.6
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.59
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.58
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.58
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.52
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.51
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.49
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.49
PTZ00429	746	beta-adaptin; Provisional	99.49
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.46
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.45
PTZ00429	746	beta-adaptin; Provisional	99.43
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.42
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.38
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.3
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.26
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.24
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.18
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.13
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.12
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.1
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.1
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.09
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.99
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.98
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.97
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.95
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.94
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.92
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.91
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.89
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.89
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.87
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.87
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.84
TIGR02270	410	conserved hypothetical protein. Members are found	98.83
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.81
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.81
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.75
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.73
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.7
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.7
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.7
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.65
COG5369	743	Uncharacterized conserved protein [Function unknow	98.63
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.63
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.63
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.62
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.62
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.55
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.54
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.52
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.5
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.5
TIGR02270	410	conserved hypothetical protein. Members are found	98.49
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.44
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.39
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.39
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.37
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.37
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.34
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.33
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.31
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.3
PF05536	543	Neurochondrin: Neurochondrin	98.29
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.28
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.28
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.21
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.19
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.18
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.16
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.16
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	98.15
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.15
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.13
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.11
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.11
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.07
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.07
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.06
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.05
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.04
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.03
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.98
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.98
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.97
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.93
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.92
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.91
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.91
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.88
KOG0567	289	consensus HEAT repeat-containing protein [General	97.86
PF05536	543	Neurochondrin: Neurochondrin	97.85
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.79
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.78
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.77
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.74
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.71
KOG0567	289	consensus HEAT repeat-containing protein [General	97.71
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.67
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.47
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.46
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.46
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.45
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.4
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.37
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.34
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.34
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.27
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.22
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.22
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.22
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.2
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.16
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.12
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.11
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.08
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.08
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.04
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.03
PF05004	309	IFRD: Interferon-related developmental regulator (	96.94
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.91
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.9
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.9
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.84
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.75
PF05004	309	IFRD: Interferon-related developmental regulator (	96.6
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.59
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.53
KOG2025	892	consensus Chromosome condensation complex Condensi	96.51
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.46
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.43
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.41
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.32
KOG2734	536	consensus Uncharacterized conserved protein [Funct	96.29
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.24
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.23
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.17
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.16
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.08
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.9
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.9
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.9
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.9
PRK14707	2710	hypothetical protein; Provisional	95.88
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	95.83
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	95.79
KOG1243	690	consensus Protein kinase [General function predict	95.78
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.76
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.76
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.72
KOG2956	516	consensus CLIP-associating protein [General functi	95.61
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	95.57
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.29
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.04
KOG1243	690	consensus Protein kinase [General function predict	94.99
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.96
KOG3036	293	consensus Protein involved in cell differentiation	94.92
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.84
KOG3036	293	consensus Protein involved in cell differentiation	94.78
KOG0413	1529	consensus Uncharacterized conserved protein relate	94.7
KOG2025	892	consensus Chromosome condensation complex Condensi	94.58
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.57
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.55
PRK14707	2710	hypothetical protein; Provisional	94.14
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.92
PF07814	361	WAPL: Wings apart-like protein regulation of heter	93.9
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.75
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.72
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.71
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.7
KOG2956	516	consensus CLIP-associating protein [General functi	93.5
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.36
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.27
COG5656	970	SXM1 Importin, protein involved in nuclear import	93.25
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	93.23
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.13
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	93.08
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	92.98
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.9
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.78
KOG2933	334	consensus Uncharacterized conserved protein [Funct	92.66
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.56
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	92.16
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	92.1
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	91.91
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.88
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	91.88
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	91.78
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.74
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	91.74
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	91.74
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	91.54
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	91.49
KOG2032	533	consensus Uncharacterized conserved protein [Funct	91.38
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.27
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	90.76
KOG2933	334	consensus Uncharacterized conserved protein [Funct	90.68
KOG2137	700	consensus Protein kinase [Signal transduction mech	90.67
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	90.44
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	90.36
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	90.28
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	90.21
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	90.18
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	90.09
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	89.98
PF14631	1426	FancD2: Fanconi anaemia protein FancD2 nuclease; P	89.87
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	89.78
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	89.77
KOG2137	700	consensus Protein kinase [Signal transduction mech	89.48
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	89.32
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	89.09
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	88.81
COG5098	1128	Chromosome condensation complex Condensin, subunit	88.8
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	87.79
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	87.28
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	86.96
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	85.43
KOG0413	1529	consensus Uncharacterized conserved protein relate	85.26
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	85.2
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	84.77
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	84.34
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	84.11
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	83.76
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	83.5
cd03561	133	VHS VHS domain family; The VHS domain is present i	83.06
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	82.06
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	82.0
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	81.88
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	81.41
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	81.25
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	80.99
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	80.75
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	80.27
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	80.24

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=8e-47  Score=416.32  Aligned_cols=501  Identities=18%  Similarity=0.171  Sum_probs=416.4

Q ss_pred             cccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCc--h-hH-HHHHhcCchHHHHHhhcCC---h-HHHHHHHHHHHHH
Q 009514           13 FLQEENMEFLLSLLNNESENVSGLGASIISHSCKTS--L-EQ-KLLFDAGVLKRLTSLLGGS---L-IQRDASLESIATI   84 (533)
Q Consensus        13 l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~--~-~~-~~i~~~g~i~~L~~lL~~~---~-~v~~~al~aL~~l   84 (533)
                      ++..|++|+|+.+|++++...++.|+.+|.+++...  + ++ ..++..|++|+|+.++++.   + .+++.++.+|.++
T Consensus        95 Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nL  174 (2102)
T PLN03200         95 VLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL  174 (2102)
T ss_pred             HHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence            446899999999999999999999999999999764  3 34 4467899999999999862   2 3677788999999


Q ss_pred             hcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhh
Q 009514           85 FKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGD  162 (533)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~  162 (533)
                      +...++..+.+.+   .|+++.++.+++++++..|..|+.+|.+++...+. ....+++.|++|.|++++++  +..+++
T Consensus       175 s~~~en~~~~IIe---aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~~~aVIeaGaVP~LV~LL~sg~~~~VRE  250 (2102)
T PLN03200        175 CGSTDGFWSATLE---AGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-SISKVLDAGAVKQLLKLLGQGNEVSVRA  250 (2102)
T ss_pred             hcCccchHHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence            9888776555543   68999999999999999999999999888766433 46678899999999999974  347899


Q ss_pred             hHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCC-------CchhHHHHHHHHHHhhccchh-----------hhH
Q 009514          163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL-------HPRRFEGILLALADMCSKLEC-----------CRS  224 (533)
Q Consensus       163 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~-------~~~~~~~a~~aL~~l~~~~~~-----------~~~  224 (533)
                      +|+++|.+++.+++++++.+++.|++|.|++++..+..       ....+++|+|+|+|+|++.+.           .|.
T Consensus       251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd  330 (2102)
T PLN03200        251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRS  330 (2102)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccch
Confidence            99999999999999999999999999999998875431       234689999999998874211           000


Q ss_pred             --------------------------------------------------------------------hhhhhchHHHHH
Q 009514          225 --------------------------------------------------------------------RCLSLQVLKLVV  236 (533)
Q Consensus       225 --------------------------------------------------------------------~~~~~~~l~~l~  236 (533)
                                                                                          .+.+.++++.|+
T Consensus       331 ~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV  410 (2102)
T PLN03200        331 PAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLV  410 (2102)
T ss_pred             HHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhh
Confidence                                                                                011123445556


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc
Q 009514          237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG  316 (533)
Q Consensus       237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~  316 (533)
                      .++...+.++|..++++|++++.+....++. +.+.|++|.|+++|.+++.+++..|+++|+|++.+....+..+++.|+
T Consensus       411 ~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~a-Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGa  489 (2102)
T PLN03200        411 GLITMATADVQEELIRALSSLCCGKGGLWEA-LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGG  489 (2102)
T ss_pred             hhhccCCHHHHHHHHHHHHHHhCCCHHHHHH-HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            6666667789999999999999775555555 789999999999999999999999999999999888788889999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcch-H--
Q 009514          317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS-V--  393 (533)
Q Consensus       317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~--  393 (533)
                      +|.|++++.+++..++++|+|+|.|++.+ ++..+..+.+.|+++.|+++|++.+++.+..++|+|.+++.+.+.. +  
T Consensus       490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~  568 (2102)
T PLN03200        490 IPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ  568 (2102)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence            99999999999999999999999999874 3445666668899999999999999999999999999997432211 0  


Q ss_pred             -------------HHHH-------h-------------hcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHH
Q 009514          394 -------------EYIF-------A-------------EDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEA  440 (533)
Q Consensus       394 -------------~~i~-------~-------------~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  440 (533)
                                   ..++       .             ..| .++.|.++|.+ +++.+++.|+|+|.|++.++++.++.
T Consensus       569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~g-gL~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~~~d~~~a  646 (2102)
T PLN03200        569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND-ALRTLIQLLSS-SKEETQEKAASVLADIFSSRQDLCES  646 (2102)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccc-cHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCChHHHHH
Confidence                         1000       1             011 57889898888 89999999999999999999888888


Q ss_pred             HHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHH
Q 009514          441 VMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKT  520 (533)
Q Consensus       441 ~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~  520 (533)
                      ++.       .|++|.++.+|++++.+++++++|+|.+++.   ++..++...+.+.|++++|++++++++.++.+.|..
T Consensus       647 vv~-------agaIpPLV~LLss~~~~v~keAA~AL~nL~~---~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~  716 (2102)
T PLN03200        647 LAT-------DEIINPCIKLLTNNTEAVATQSARALAALSR---SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVC  716 (2102)
T ss_pred             HHH-------cCCHHHHHHHHhcCChHHHHHHHHHHHHHHh---CCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHH
Confidence            886       7999999999999999999999999999994   456667778899999999999999999999999999


Q ss_pred             HHHHHhhhccc
Q 009514          521 ALEQFNSFDDS  531 (533)
Q Consensus       521 aL~~~~~~~~~  531 (533)
                      ||.++.+.+|.
T Consensus       717 ALanLl~~~e~  727 (2102)
T PLN03200        717 ALANLLSDPEV  727 (2102)
T ss_pred             HHHHHHcCchH
Confidence            99999887653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=3.3e-45  Score=403.63  Aligned_cols=502  Identities=16%  Similarity=0.139  Sum_probs=414.0

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCC--hhhh
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNN--PEVV   92 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~--~~~~   92 (533)
                      .|++|.|+.+|.++++.+|+.|+.++.+++..++++..+...|++|+|+.+|++ +...|+.|+.+|..++.++  ++..
T Consensus        57 aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~  136 (2102)
T PLN03200         57 SQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVG  136 (2102)
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhh
Confidence            789999999999999999999999999999999999999999999999999986 7899999999999999765  4333


Q ss_pred             hhhccccCcccHHHHHHHHhcCC---hhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHH
Q 009514           93 SQFVGPDTGRTLSCIIEIVKDRF---ARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAF  168 (533)
Q Consensus        93 ~~~~~~~~~~~i~~l~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L  168 (533)
                      ..+..  ..|++|.++.++++++   ..++..|+.+|++++...++. ...+++.|++|.|++++++ ++..+.+|+++|
T Consensus       137 ~~I~v--~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~-~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aL  213 (2102)
T PLN03200        137 SKIFS--TEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGF-WSATLEAGGVDILVKLLSSGNSDAQANAASLL  213 (2102)
T ss_pred             hhhhh--hcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccch-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            23221  2689999999999864   335677889999999876542 3456789999999999984 567899999999


Q ss_pred             HhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC-----
Q 009514          169 SSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-----  243 (533)
Q Consensus       169 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~-----  243 (533)
                      .+++.+.++....+++.|++|.|+++|.++ .++.+|+.|+|+|.++++++++.++.+++.|++|.|++++..++     
T Consensus       214 a~Lass~ee~~~aVIeaGaVP~LV~LL~sg-~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~  292 (2102)
T PLN03200        214 ARLMMAFESSISKVLDAGAVKQLLKLLGQG-NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQ  292 (2102)
T ss_pred             HHHHcCChHHHHHHHHCCCHHHHHHHHccC-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhc
Confidence            999988777778888999999999998765 34688999999999999998999999999999999999998544     


Q ss_pred             ----HHHHHHHHHHHHHHhhcccc-----------ccc-------------------------h----------------
Q 009514          244 ----SDVRSAACMCLRSVSRSIKN-----------LSA-------------------------G----------------  267 (533)
Q Consensus       244 ----~~v~~~a~~~L~~ls~~~~~-----------~~~-------------------------~----------------  267 (533)
                          ..++..|.|+|.|++.....           .+.                         .                
T Consensus       293 ~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr  372 (2102)
T PLN03200        293 GEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLK  372 (2102)
T ss_pred             cccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhC
Confidence                35689999999998773111           000                         0                


Q ss_pred             --------------------------hhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHH
Q 009514          268 --------------------------SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV  321 (533)
Q Consensus       268 --------------------------~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~  321 (533)
                                                .+.+.++++.||.++..++.+++..++|+|.+++.+..+.++.+.+.|+++.|+
T Consensus       373 ~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV  452 (2102)
T PLN03200        373 PRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLI  452 (2102)
T ss_pred             CCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHH
Confidence                                      011224445566666666788999999999999988888889999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcC
Q 009514          322 QLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG  401 (533)
Q Consensus       322 ~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~  401 (533)
                      ++|.+++...+..++|++++++.+ +++.+..+.+.|+++.|+++|.+++.++++.|+|+|.|++.+. +.+..++...|
T Consensus       453 ~LL~s~s~~iQ~~A~~~L~nLa~~-ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aG  530 (2102)
T PLN03200        453 SLLGLSSEQQQEYAVALLAILTDE-VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAG  530 (2102)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCC
Confidence            999999999999999999999874 3467889999999999999999999999999999999999864 34566664433


Q ss_pred             chHHHHHHHhccCCchhHHHHHHHHHHHhccCCh-hhHHH---------------HH---HHhhH-----------hhhh
Q 009514          402 IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE-SHKEA---------------VM---DQLLL-----------RAEN  451 (533)
Q Consensus       402 ~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~---------------~~---~~~~~-----------~~~~  451 (533)
                       +++.|+.+|.+ .++++++.++|+|.|+..+.+ +....               ++   .+++.           ....
T Consensus       531 -AIppLV~LL~s-gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~  608 (2102)
T PLN03200        531 -AVPALLWLLKN-GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAN  608 (2102)
T ss_pred             -CHHHHHHHHhC-CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhcc
Confidence             78999999988 789999999999999974221 11100               00   00000           0024


Q ss_pred             hhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          452 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       452 ~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      |+++.|+++|++++..+++.|+|+|.+++.    +..+....+...|++++|+.++.+++.++++.+++||.++.+.+
T Consensus       609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a----~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~  682 (2102)
T PLN03200        609 DALRTLIQLLSSSKEETQEKAASVLADIFS----SRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI  682 (2102)
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence            688999999999999999999999999996    56677788999999999999999999999999999999998643

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-41  Score=329.44  Aligned_cols=369  Identities=21%  Similarity=0.304  Sum_probs=325.6

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHH
Q 009514          104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKL  181 (533)
Q Consensus       104 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~  181 (533)
                      .+..+..+.+.++..+..+...++.+.........+..+..|.+|.+++.++  +++.++.+|+|+|+++++++.+..+.
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            5667788889999889999999998876665556777888999999999997  35789999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCH-HHHHHHHHHHHHHhhc
Q 009514          182 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS-DVRSAACMCLRSVSRS  260 (533)
Q Consensus       182 ~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~-~v~~~a~~~L~~ls~~  260 (533)
                      ++++|++|.|+.++.+++  ..++++|+|+|++++++.+.+|+.+...|++++|+.++...+. .....+.|+|.||+++
T Consensus       148 vv~agavp~fi~Ll~s~~--~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg  225 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPS--ADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG  225 (514)
T ss_pred             cccCCchHHHHHHhcCCc--HHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence            999999999999887764  7899999999999999999999999999999999999997765 7788899999999998


Q ss_pred             cccccchhh-hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514          261 IKNLSAGSF-MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL  339 (533)
Q Consensus       261 ~~~~~~~~~-~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL  339 (533)
                      .. .... + ....++|.|..++.+.|+++...|+|||++|+.+..+..+.+++.|+++.|+.++..++..++..|++++
T Consensus       226 k~-P~P~-~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai  303 (514)
T KOG0166|consen  226 KN-PSPP-FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI  303 (514)
T ss_pred             CC-CCCc-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence            42 2212 2 3467899999999999999999999999999999999999999999999999999999988888899999


Q ss_pred             HHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhH
Q 009514          340 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI  419 (533)
Q Consensus       340 ~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v  419 (533)
                      +|++.+.+                                           ...+.+++.+  .++.|..++..++...+
T Consensus       304 GNIvtG~d-------------------------------------------~QTq~vi~~~--~L~~l~~ll~~s~~~~i  338 (514)
T KOG0166|consen  304 GNIVTGSD-------------------------------------------EQTQVVINSG--ALPVLSNLLSSSPKESI  338 (514)
T ss_pred             cceeeccH-------------------------------------------HHHHHHHhcC--hHHHHHHHhccCcchhH
Confidence            99877554                                           2334445555  67888888886678889


Q ss_pred             HHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCc
Q 009514          420 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI  499 (533)
Q Consensus       420 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~  499 (533)
                      +++|||+++|++.|+.++.+.+++       .|++|.|+.+|++.+.++|++|+|+|+|++   .+|++++..++++.|+
T Consensus       339 kkEAcW~iSNItAG~~~qiqaVid-------a~l~p~Li~~l~~~ef~~rKEAawaIsN~t---s~g~~~qi~yLv~~gi  408 (514)
T KOG0166|consen  339 KKEACWTISNITAGNQEQIQAVID-------ANLIPVLINLLQTAEFDIRKEAAWAISNLT---SSGTPEQIKYLVEQGI  408 (514)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHH-------cccHHHHHHHHhccchHHHHHHHHHHHhhc---ccCCHHHHHHHHHcCC
Confidence            999999999999999999999997       899999999999999999999999999999   4688999999999999


Q ss_pred             HHHHHhhhcCCCCcHHHHHHHHHHHHhhhccc
Q 009514          500 VSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS  531 (533)
Q Consensus       500 ~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~~  531 (533)
                      +++|..+|.-.+.++-..+..+|++|.+.++.
T Consensus       409 I~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~  440 (514)
T KOG0166|consen  409 IKPLCDLLTCPDVKIILVALDGLENILKVGEA  440 (514)
T ss_pred             chhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999867777777899999999988764

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.5e-40  Score=297.89  Aligned_cols=372  Identities=17%  Similarity=0.212  Sum_probs=315.9

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHHH
Q 009514          102 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ  179 (533)
Q Consensus       102 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~  179 (533)
                      .-+|.+.+-+-+.+.+-+..|+.-++.+.........+.+++.|++|.+++++++  ...++.+|+|+|+|++++.....
T Consensus        71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT  150 (526)
T COG5064          71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT  150 (526)
T ss_pred             hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence            4678888888888999999988888887666555567789999999999999963  46678999999999999999888


Q ss_pred             HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCH--HHHHHHHHHHHHH
Q 009514          180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS--DVRSAACMCLRSV  257 (533)
Q Consensus       180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~--~v~~~a~~~L~~l  257 (533)
                      +.++++|++|.++++|.+++  ..++++++|+|++++++++.+|+.+.++|.+.+++.++.+.-.  .+...+.|.|.||
T Consensus       151 kvVvd~~AVPlfiqlL~s~~--~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl  228 (526)
T COG5064         151 KVVVDAGAVPLFIQLLSSTE--DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL  228 (526)
T ss_pred             EEEEeCCchHHHHHHHcCch--HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence            89999999999999887764  6799999999999999999999999999999999999986644  7788999999999


Q ss_pred             hhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHH
Q 009514          258 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR  337 (533)
Q Consensus       258 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~  337 (533)
                      ++.. +.....-.-...+|.|.+++.+.|+++..-|+|||.+++.++.+..+.+++.|..+.|++++.+++..++..+++
T Consensus       229 cRGk-nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR  307 (526)
T COG5064         229 CRGK-NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR  307 (526)
T ss_pred             hCCC-CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence            9872 222221233567999999999999999999999999999988888888898898888888888877777777777


Q ss_pred             HHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCch
Q 009514          338 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA  417 (533)
Q Consensus       338 aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~  417 (533)
                      .++|+..+.+                                           ...+.++++|  +++.+..+|++ ++.
T Consensus       308 ~vGNIVTG~D-------------------------------------------~QTqviI~~G--~L~a~~~lLs~-~ke  341 (526)
T COG5064         308 SVGNIVTGSD-------------------------------------------DQTQVIINCG--ALKAFRSLLSS-PKE  341 (526)
T ss_pred             hhcCeeecCc-------------------------------------------cceehheecc--cHHHHHHHhcC-hhh
Confidence            7777765443                                           3445566666  77888777777 888


Q ss_pred             hHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHC
Q 009514          418 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA  497 (533)
Q Consensus       418 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~  497 (533)
                      .++.++||.|+|++.|+.++.+.+++       .+++|.|+.+|.+.+...+++|||+++|.+.. +-+-++.++++++.
T Consensus       342 ~irKEaCWTiSNITAGnteqiqavid-------~nliPpLi~lls~ae~k~kKEACWAisNatsg-g~~~PD~iryLv~q  413 (526)
T COG5064         342 NIRKEACWTISNITAGNTEQIQAVID-------ANLIPPLIHLLSSAEYKIKKEACWAISNATSG-GLNRPDIIRYLVSQ  413 (526)
T ss_pred             hhhhhhheeecccccCCHHHHHHHHh-------cccchHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCchHHHHHHHc
Confidence            99999999999999999999999997       89999999999999999999999999999962 23457889999999


Q ss_pred             CcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          498 GIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       498 g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      |++.+|..+|+-.+..+-+-+..++.++.+.++
T Consensus       414 G~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge  446 (526)
T COG5064         414 GFIKPLCDLLDVVDNKIIEVALDAIENILKVGE  446 (526)
T ss_pred             cchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence            999999999986666566677899999988765

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-34  Score=278.91  Aligned_cols=322  Identities=18%  Similarity=0.269  Sum_probs=277.0

Q ss_pred             HHHHHhhhcCCCCchhHHHHHHHHHHhhccc--hhhhHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhhcccccc
Q 009514          189 DKLYNHLQKGSLHPRRFEGILLALADMCSKL--ECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       189 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~--~~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      +..+..+.+.  ++..+..+...+..+.+..  +.. ..+...|.+|.++++|. +.++.++..|+|+|.|++.......
T Consensus        69 ~~~~~~~~S~--~~~~q~~a~~~~rkllS~~~~ppi-~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T  145 (514)
T KOG0166|consen   69 ELMLAALYSD--DPQQQLTATQAFRKLLSKERNPPI-DEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT  145 (514)
T ss_pred             HHHHHHHhCC--CHHHHHHHHHHHHHHHccCCCCCH-HHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence            4444445444  2445666666666655432  233 44555699999999997 5579999999999999998755555


Q ss_pred             chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCH-HHHHHHHHHHHHhhc
Q 009514          266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS-TIRLNALRALRNLIF  344 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~al~aL~~l~~  344 (533)
                      .. ++++|.+|.+++++.+++.++++.|.|||+|++.+.+.++..+++.|++++|+.++..++. ...+++.|+|.|+|+
T Consensus       146 ~~-vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr  224 (514)
T KOG0166|consen  146 KV-VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR  224 (514)
T ss_pred             cc-cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence            45 7899999999999999999999999999999999999999999999999999999988765 789999999999999


Q ss_pred             cCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHH
Q 009514          345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM  424 (533)
Q Consensus       345 ~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~  424 (533)
                      +..|.-....+ ...++.|..++.+.|++|...|+|++++++++.++.++.+++.|  +++.|+.+|.+ ++..++..|+
T Consensus       225 gk~P~P~~~~v-~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g--vv~~LV~lL~~-~~~~v~~PaL  300 (514)
T KOG0166|consen  225 GKNPSPPFDVV-APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAG--VVPRLVDLLGH-SSPKVVTPAL  300 (514)
T ss_pred             CCCCCCcHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcc--chHHHHHHHcC-CCcccccHHH
Confidence            87542222222 34589999999999999999999999999999999999999998  89999999998 8889999999


Q ss_pred             HHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHH
Q 009514          425 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHV  503 (533)
Q Consensus       425 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L  503 (533)
                      ++++|+++|+..+.+.+++       .+++|.|..++. ++...++++|||+|+|++.    |+.++++.+.+.|++|.|
T Consensus       301 RaiGNIvtG~d~QTq~vi~-------~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA----G~~~qiqaVida~l~p~L  369 (514)
T KOG0166|consen  301 RAIGNIVTGSDEQTQVVIN-------SGALPVLSNLLSSSPKESIKKEACWTISNITA----GNQEQIQAVIDANLIPVL  369 (514)
T ss_pred             hhccceeeccHHHHHHHHh-------cChHHHHHHHhccCcchhHHHHHHHHHHHhhc----CCHHHHHHHHHcccHHHH
Confidence            9999999999999999997       899999999998 5667799999999999996    899999999999999999


Q ss_pred             HhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          504 KNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       504 ~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      +.++++.+.++|..|+||+.|+...+
T Consensus       370 i~~l~~~ef~~rKEAawaIsN~ts~g  395 (514)
T KOG0166|consen  370 INLLQTAEFDIRKEAAWAISNLTSSG  395 (514)
T ss_pred             HHHHhccchHHHHHHHHHHHhhcccC
Confidence            99999999999999999999986554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=4.5e-34  Score=256.34  Aligned_cols=321  Identities=18%  Similarity=0.228  Sum_probs=274.0

Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHHhhc-cchhhhHhhhhhchHHHHHHhc-CCCCHHHHHHHHHHHHHHhhcccccc
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALADMCS-KLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      +|.+.+-|.+.+  -+.+..+..-+..+.+ ....-.+.+++.|++|.++++| .......+..|+|+|.|++....+..
T Consensus        73 lp~lt~~l~SdD--ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT  150 (526)
T COG5064          73 LPQLTQQLFSDD--IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT  150 (526)
T ss_pred             hHHHHHHHhhhH--HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence            567766565542  4445555555554433 2222335678999999999999 56677889999999999988765555


Q ss_pred             chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCH--HHHHHHHHHHHHhh
Q 009514          266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS--TIRLNALRALRNLI  343 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~~~~~al~aL~~l~  343 (533)
                      +. +++.|.+|.++++|.+++.+|++.+.|||+|++.+++.++..+++.|++++++.++.++..  .+.+++.|+|+|||
T Consensus       151 kv-Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc  229 (526)
T COG5064         151 KV-VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC  229 (526)
T ss_pred             EE-EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence            45 6899999999999999999999999999999999999999999999999999999987654  78899999999999


Q ss_pred             ccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHH
Q 009514          344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG  423 (533)
Q Consensus       344 ~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a  423 (533)
                      ++..|.-....+ ...++.|.+|+.+.|+++...|+|++++++++..+.++.+++.|  +...|+.+|.+ ++..|+..+
T Consensus       230 RGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g--~~~RLvElLs~-~sa~iqtPa  305 (526)
T COG5064         230 RGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVG--IPGRLVELLSH-ESAKIQTPA  305 (526)
T ss_pred             CCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcC--CcHHHHHHhcC-ccccccCHH
Confidence            986552222222 23589999999999999999999999999999999999999988  78889999988 899999999


Q ss_pred             HHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHH
Q 009514          424 MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHV  503 (533)
Q Consensus       424 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L  503 (533)
                      ++.++|+.+|+..+.+.++.       .|+++.+-.+|.++...+|++|||+|+|+++    |+.++++.+.++..+|+|
T Consensus       306 lR~vGNIVTG~D~QTqviI~-------~G~L~a~~~lLs~~ke~irKEaCWTiSNITA----Gnteqiqavid~nliPpL  374 (526)
T COG5064         306 LRSVGNIVTGSDDQTQVIIN-------CGALKAFRSLLSSPKENIRKEACWTISNITA----GNTEQIQAVIDANLIPPL  374 (526)
T ss_pred             HHhhcCeeecCccceehhee-------cccHHHHHHHhcChhhhhhhhhheeeccccc----CCHHHHHHHHhcccchHH
Confidence            99999999999988888886       9999999999999999999999999999997    888999999999999999


Q ss_pred             HhhhcCCCCcHHHHHHHHHHHHh
Q 009514          504 KNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       504 ~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                      +.+++..+...+..|.||+.+..
T Consensus       375 i~lls~ae~k~kKEACWAisNat  397 (526)
T COG5064         375 IHLLSSAEYKIKKEACWAISNAT  397 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999777788888999998864

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-32  Score=245.37  Aligned_cols=403  Identities=16%  Similarity=0.147  Sum_probs=338.3

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ   94 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~   94 (533)
                      .....+.+-++.+.++.+|.+|...+++++-+.+++..+++.+|+++|+.-..+ .-.+|..+..|+++++..+ +++-.
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d-~nk~k  162 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD-SNKVK  162 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccc-cchhh
Confidence            356688888999999999999999999999999999999999999987766554 5688999999999997654 33334


Q ss_pred             hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-CCCchhhhHHHHHHhhhc
Q 009514           95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIA  173 (533)
Q Consensus        95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~a~~~L~~l~~  173 (533)
                      +..   .|++.++.++-++.+..+|.++...|.++.....  .+...+..|++|.|+.+++ .+..+|+.++.++++++.
T Consensus       163 iA~---sGaL~pltrLakskdirvqrnatgaLlnmThs~E--nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV  237 (550)
T KOG4224|consen  163 IAR---SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRE--NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV  237 (550)
T ss_pred             hhh---ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhh--hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh
Confidence            433   6789999999999999999999999999987653  4667889999999999999 467899999999999986


Q ss_pred             CCHHHHHHHHHcC--cHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHH
Q 009514          174 EKEDMQKLAFEVN--GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAAC  251 (533)
Q Consensus       174 ~~~~~~~~~~~~~--~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~  251 (533)
                      +. ..++...+.+  .+|.|+++..+++  ++++.+|..+|++++++ .++...+++.|.+|.++++|+++.-....+..
T Consensus       238 d~-~~Rk~Laqaep~lv~~Lv~Lmd~~s--~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasV  313 (550)
T KOG4224|consen  238 DR-RARKILAQAEPKLVPALVDLMDDGS--DKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASV  313 (550)
T ss_pred             hH-HHHHHHHhcccchHHHHHHHHhCCC--hHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHH
Confidence            54 4466777777  7999999888774  78899999999999975 57778899999999999999999888888999


Q ss_pred             HHHHHHhhccccccchhhhhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHH
Q 009514          252 MCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST  330 (533)
Q Consensus       252 ~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  330 (533)
                      .|++|++-+.-+.. . +.+.|++.+||.+|+. ++++.|..|...|.|++..+..++..++++|+|+.+..++.+....
T Consensus       314 aCIrnisihplNe~-l-I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvs  391 (550)
T KOG4224|consen  314 ACIRNISIHPLNEV-L-IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVS  391 (550)
T ss_pred             HHHhhcccccCccc-c-eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChh
Confidence            99999998744322 2 6899999999999985 5677999999999999988888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcC----chHHH
Q 009514          331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG----IILDA  406 (533)
Q Consensus       331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~----~~~~~  406 (533)
                      +|.....++..++.+.  ..|..+.+.|.++.|+..+.+.+.+++.++..+|.|++.+.. ....+++.-+    .+-..
T Consensus       392 vqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~-~YarviEawd~P~~gi~g~  468 (550)
T KOG4224|consen  392 VQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE-HYARVIEAWDHPVQGIQGR  468 (550)
T ss_pred             HHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH-HHHHHHHHhcCcchhHHHH
Confidence            9998888888887743  378999999999999999999999999999999999998754 3334444311    14566


Q ss_pred             HHHHhccCCchhHHHHHHHHHHHhccCC
Q 009514          407 VGRQLRIASKAEIEIQGMYVLGNVATGK  434 (533)
Q Consensus       407 L~~~L~~~~~~~v~~~a~~~L~~l~~~~  434 (533)
                      |.+++.+ ....++.-+.|.+.++....
T Consensus       469 L~Rfl~S-~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  469 LARFLAS-HELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             HHHHHhh-hHHHHHHHHHHHHHHHHHhC
Confidence            7777776 66678888899998887643

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-30  Score=235.92  Aligned_cols=402  Identities=17%  Similarity=0.160  Sum_probs=329.8

Q ss_pred             cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHH-HHhcCCCCchhhhHHHHHHhhhcCCHHHH
Q 009514          101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL-LELLDDPGRVGDEASFAFSSLIAEKEDMQ  179 (533)
Q Consensus       101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~a~~~L~~l~~~~~~~~  179 (533)
                      ...+.+++-++++.++.+|.+|...+.|++..+..  +-.++.-+++..| .+++.+...+|..+.+++++++.-+ +.+
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~en--k~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d-~nk  160 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMEN--KGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD-SNK  160 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCC--ceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccc-cch
Confidence            45778889999999999999999999999887643  2334455555544 5777788899999999999999663 445


Q ss_pred             HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514          180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  259 (533)
Q Consensus       180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~  259 (533)
                      ..+...|++.++.+ |.+. .+..++.++..+|.++.. ..+.|+.++..|++|.++.+++++++.+|+.++.++.+++-
T Consensus       161 ~kiA~sGaL~pltr-Laks-kdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV  237 (550)
T KOG4224|consen  161 VKIARSGALEPLTR-LAKS-KDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV  237 (550)
T ss_pred             hhhhhccchhhhHh-hccc-chhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh
Confidence            66778899999999 5554 467889999999999985 56889999999999999999999999999999999999976


Q ss_pred             ccccccchhhhhcC--cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHH
Q 009514          260 SIKNLSAGSFMNET--IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR  337 (533)
Q Consensus       260 ~~~~~~~~~~~~~~--~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~  337 (533)
                      . ...|+. +.+.+  .+|.|++++++++++++..|..+|+|++.+ ..++..+.++|++|.++++++++.-......+.
T Consensus       238 d-~~~Rk~-Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVa  314 (550)
T KOG4224|consen  238 D-RRARKI-LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVA  314 (550)
T ss_pred             h-HHHHHH-HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence            5 222333 55555  999999999999999999999999999964 566778999999999999999988888888899


Q ss_pred             HHHHhhccCChHhHHHHHHhhcHHHHHhhhCCC-ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc
Q 009514          338 ALRNLIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK  416 (533)
Q Consensus       338 aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~  416 (533)
                      ++.|+..+..  +.--+.+.|.+..|+++|+-. +.++|..|..+|+|++......+..+++.|  .++.+..++.+ ..
T Consensus       315 CIrnisihpl--Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg--Ai~kl~eL~lD-~p  389 (550)
T KOG4224|consen  315 CIRNISIHPL--NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG--AIPKLIELLLD-GP  389 (550)
T ss_pred             HHhhcccccC--cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC--chHHHHHHHhc-CC
Confidence            9999987543  344577889999999999854 566999999999999987777788888888  78999888877 77


Q ss_pred             hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHH
Q 009514          417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHD  496 (533)
Q Consensus       417 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~  496 (533)
                      -+++.....++..++..+. .+..+.+       .|++|.|+.++.+.+.+++-+|+.+|.||+.     ..++..++.|
T Consensus       390 vsvqseisac~a~Lal~d~-~k~~lld-------~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss-----~v~~YarviE  456 (550)
T KOG4224|consen  390 VSVQSEISACIAQLALNDN-DKEALLD-------SGIIPILIPWTGSESEEVRGNAAAALINLSS-----DVEHYARVIE  456 (550)
T ss_pred             hhHHHHHHHHHHHHHhccc-cHHHHhh-------cCCcceeecccCccchhhcccHHHHHHhhhh-----hhHHHHHHHH
Confidence            7889888888888887654 3566665       8999999999999999999999999999995     2333333333


Q ss_pred             ------CCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          497 ------AGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       497 ------~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                            .|+-..|.+++.+...-++.-+.|.+.++.+-.
T Consensus       457 awd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  457 AWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             HhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence                  567788999988766677777888888876643

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.95  E-value=6e-25  Score=214.40  Aligned_cols=511  Identities=24%  Similarity=0.268  Sum_probs=350.5

Q ss_pred             cccCCCCCcccccccchHHHHhhhcC-CCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHH
Q 009514            3 YQSKMAPKYDFLQEENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLES   80 (533)
Q Consensus         3 ~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~a   80 (533)
                      .++|.++|........|-..+.++-+ +.+.+.+.-+...+++|+..+||..+.+.|.++.+.-++.. +..+|.+|+.+
T Consensus       125 et~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~  204 (678)
T KOG1293|consen  125 ETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLC  204 (678)
T ss_pred             hcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHH
Confidence            46778888877766666666666666 88888999999999999999999999999999999999987 78999999999


Q ss_pred             HH---HHhcCChhhhhhhccc-cCcccHH--HHHHHHhcCChhhHHHHHHHHHHhhhcCCCcc--hhh-hhHhhhHHHHH
Q 009514           81 IA---TIFKNNPEVVSQFVGP-DTGRTLS--CIIEIVKDRFARTRLLASLCLIVIRNASPCYL--QDV-GIKTKLINNLL  151 (533)
Q Consensus        81 L~---~l~~~~~~~~~~~~~~-~~~~~i~--~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~-~~~~~~i~~L~  151 (533)
                      ++   ++..++|...-.+... .+.+..+  .+.++.+++++..+..++.|+..++..+.++.  ... .....+=..++
T Consensus       205 ~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~  284 (678)
T KOG1293|consen  205 LSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIV  284 (678)
T ss_pred             hhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHH
Confidence            99   7777777653333222 2234444  45678999999999999999999988763210  000 11111111111


Q ss_pred             -----HhcCCCCchhhhHH-HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCC----CCchhHHHHHH---HHHHhhcc
Q 009514          152 -----ELLDDPGRVGDEAS-FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS----LHPRRFEGILL---ALADMCSK  218 (533)
Q Consensus       152 -----~ll~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~----~~~~~~~~a~~---aL~~l~~~  218 (533)
                           .+..++......+. ......+.-.+..+....+...++.+++++.-..    ..++.+.-++.   .+..++..
T Consensus       285 q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~  364 (678)
T KOG1293|consen  285 QYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYG  364 (678)
T ss_pred             HHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhh
Confidence                 11123322222222 2222333223334444555566666666554321    01222211111   11112111


Q ss_pred             -chhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514          219 -LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAI  297 (533)
Q Consensus       219 -~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL  297 (533)
                       .-..++++.+......+....-..+..++.+|+-|+.+++++...++.. +....++.+|++++.+|+..++..+.++|
T Consensus       365 ~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai  443 (678)
T KOG1293|consen  365 LEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAI  443 (678)
T ss_pred             cchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-CccchhHHHHHHHhhCcchhHHHHHHHHH
Confidence             1234455555555555555555778899999999999999998888888 88889999999999999999999999999


Q ss_pred             HHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHH
Q 009514          298 SNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQ  377 (533)
Q Consensus       298 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~  377 (533)
                      +|++.++++.+.++++.|+|+.+.+++.+.++.+|..++|+|.++..+.+...+...........++.+.+++++.||++
T Consensus       444 ~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq  523 (678)
T KOG1293|consen  444 CNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQ  523 (678)
T ss_pred             HHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999888888888888888999999999999999999


Q ss_pred             HHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHH
Q 009514          378 ALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI  457 (533)
Q Consensus       378 a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  457 (533)
                      ++..|||+.++..+.++.+++.-+.++......+.-.+...+-.+...-+.++..+.+-+....++        +..+.+
T Consensus       524 ~fqllRNl~c~~~~svdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~--------~~fk~l  595 (678)
T KOG1293|consen  524 CFQLLRNLTCNSRKSVDFLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAME--------GIFKIL  595 (678)
T ss_pred             HHHHHHHhhcCcHHHHHHHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHH--------HHHHHH
Confidence            999999999998888999988866544444433333334444455555555555544444455554        333444


Q ss_pred             HHh--------hccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhh-cCCCCcHHHHHHHHHH
Q 009514          458 IKF--------LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-NDPCLDVKLRVKTALE  523 (533)
Q Consensus       458 v~~--------L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~~~~~~v~~~a~~aL~  523 (533)
                      +..        ..+...+.+.++.|.+.+++|..+++..++.... ..++.+....+- +|...+++......|+
T Consensus       596 vl~~e~~~n~~q~s~~~qls~~~~~~iinl~~~~s~s~~dr~~~~-~n~i~e~~~k~~~sd~~la~ki~~~~~l~  669 (678)
T KOG1293|consen  596 VLLAEVNENKKQLSIEQQLSLNIMSEIINLTTTDSSSNFDRSNLK-LNCIWELNNKLWNSDVSLATKIAIENGLE  669 (678)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCCCCCcccchhhcc-ccceechhhhcccchhHHHHHHHHHhccc
Confidence            332        2245678999999999999998766655444333 344444444433 3333344444333333

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.91  E-value=2.5e-20  Score=191.95  Aligned_cols=478  Identities=16%  Similarity=0.186  Sum_probs=338.3

Q ss_pred             ccchHHHHhhhcC---CCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCCh---HHHHHHHHHHHHHhcCCh
Q 009514           16 EENMEFLLSLLNN---ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSL---IQRDASLESIATIFKNNP   89 (533)
Q Consensus        16 ~~~i~~L~~lL~~---~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~---~v~~~al~aL~~l~~~~~   89 (533)
                      +..+..|-+.|..   .+.+.......++..++..++....+.+...-..-++++....   +....-+......+...+
T Consensus       163 e~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~  242 (708)
T PF05804_consen  163 ETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKP  242 (708)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccch
Confidence            4455666666642   2445555666777777776676666666555455555555321   111111222222222323


Q ss_pred             hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-CCCchhhhHHHHH
Q 009514           90 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAF  168 (533)
Q Consensus        90 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~a~~~L  168 (533)
                      .....+     ......+-.+++..+.-.| .+...|.|++.+..  ....+...|+++.|+++|+ ++.++...+...|
T Consensus       243 ~~~~~~-----~~~~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~--ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fL  314 (708)
T PF05804_consen  243 EAKKDY-----EKELKKLQTLIRKQEQLLR-VAFYLLLNLAEDPR--VELKMVNKGIVSLLVKCLDRENEELLILAVTFL  314 (708)
T ss_pred             hhhhhH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcChH--HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            222211     1122333344444333344 66788999998753  3556788999999999998 4567788888999


Q ss_pred             HhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHH
Q 009514          169 SSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRS  248 (533)
Q Consensus       169 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~  248 (533)
                      .+++-..+ ++..+.+.|.+++|++++.+.  +...+..+++.|.+|+. ++..|..++..|++|.++.+|++++  .+.
T Consensus       315 kkLSi~~E-NK~~m~~~giV~kL~kLl~s~--~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~--~~~  388 (708)
T PF05804_consen  315 KKLSIFKE-NKDEMAESGIVEKLLKLLPSE--NEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN--FRE  388 (708)
T ss_pred             HHHcCCHH-HHHHHHHcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc--hHH
Confidence            99986554 567788999999999988765  36789999999999986 4688999999999999999998654  556


Q ss_pred             HHHHHHHHHhhccccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC
Q 009514          249 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM  327 (533)
Q Consensus       249 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~  327 (533)
                      .+..+|.++|.. +..+.. |...+++|.+++++ ..+++++.....+.+.|++.+. .+.+.+.+.|+++.|++.....
T Consensus       389 val~iLy~LS~d-d~~r~~-f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~  465 (708)
T PF05804_consen  389 VALKILYNLSMD-DEARSM-FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKT  465 (708)
T ss_pred             HHHHHHHHhccC-HhhHHH-HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhc
Confidence            688999999987 334444 77788999999976 4677888888999999999754 5667888889999999765443


Q ss_pred             CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHH
Q 009514          328 DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA  406 (533)
Q Consensus       328 ~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~  406 (533)
                      ...+   .+..+.|++.+.++ .+....+  .+..+++++. .++++....++++|+|+...+.+ ...++++.+ +++.
T Consensus       466 ~D~l---LlKlIRNiS~h~~~-~k~~f~~--~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld-~~~ll~~~~-llp~  537 (708)
T PF05804_consen  466 RDPL---LLKLIRNISQHDGP-LKELFVD--FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD-WAQLLQEYN-LLPW  537 (708)
T ss_pred             ccHH---HHHHHHHHHhcCch-HHHHHHH--HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC-HHHHHHhCC-HHHH
Confidence            3222   23578888877643 4443332  3555666665 45788999999999999976554 344444322 8999


Q ss_pred             HHHHhccC-CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc--CChhHHHHHHHHHHhhcCCC
Q 009514          407 VGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVWAVLNLTCSS  483 (533)
Q Consensus       407 L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~--~~~~v~~~a~~~L~~l~~~~  483 (533)
                      +.+.|... ..+.+..+++..++.++. ++.....+..       .|+++.++.+|++  .|.+.-.+.++++.++.+. 
T Consensus       538 L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~-------sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-  608 (708)
T PF05804_consen  538 LKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAK-------SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-  608 (708)
T ss_pred             HHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHh-------CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-
Confidence            99988753 345788888999998886 4445555554       7999999999985  4678888999999999972 


Q ss_pred             CCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          484 SPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       484 ~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                       +.+  +...+.+.++...|+.++.|.++.+++-+-.+|.-+.++.+
T Consensus       609 -~~t--r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~  652 (708)
T PF05804_consen  609 -EET--REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE  652 (708)
T ss_pred             -hHH--HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence             223  33455678899999999999999999999999998887754

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.89  E-value=1.4e-19  Score=186.54  Aligned_cols=400  Identities=14%  Similarity=0.122  Sum_probs=315.1

Q ss_pred             hHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhcc
Q 009514           19 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVG   97 (533)
Q Consensus        19 i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~   97 (533)
                      ...+-.++. ..+.+...+..+|.+++.+...+..+++.|++++|+++|++ +..+...++..|.+++.... .+..+. 
T Consensus       252 ~kk~~~l~~-kQeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK~~m~-  328 (708)
T PF05804_consen  252 LKKLQTLIR-KQEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NKDEMA-  328 (708)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHH-
Confidence            345555555 34555667888999999999999999999999999999986 67888999999999986543 344443 


Q ss_pred             ccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHH
Q 009514           98 PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKED  177 (533)
Q Consensus        98 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~  177 (533)
                        ..+.++.+.+++++++...+..+.++|+|++.+..  .+..++..|++|.|+.+|.++ ..+..+..+|.+++.++ .
T Consensus       329 --~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~--~R~~mV~~GlIPkLv~LL~d~-~~~~val~iLy~LS~dd-~  402 (708)
T PF05804_consen  329 --ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE--LRSQMVSLGLIPKLVELLKDP-NFREVALKILYNLSMDD-E  402 (708)
T ss_pred             --HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH--HHHHHHHCCCcHHHHHHhCCC-chHHHHHHHHHHhccCH-h
Confidence              36899999999999999999999999999999764  466789999999999999864 45566888899998755 4


Q ss_pred             HHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 009514          178 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRS  256 (533)
Q Consensus       178 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~-~~~~v~~~a~~~L~~  256 (533)
                      .+..+...+++|.+++++...+ ++++....+..+.+++.+. .+.+.+.+.++++.|++.... .++-    ..++++|
T Consensus       403 ~r~~f~~TdcIp~L~~~Ll~~~-~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRN  476 (708)
T PF05804_consen  403 ARSMFAYTDCIPQLMQMLLENS-EEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRN  476 (708)
T ss_pred             hHHHHhhcchHHHHHHHHHhCC-CccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHH
Confidence            5666777889999999877653 4555666788888998764 555777788899999987543 3433    3579999


Q ss_pred             HhhccccccchhhhhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC--CHHHHH
Q 009514          257 VSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRL  333 (533)
Q Consensus       257 ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~  333 (533)
                      +|.+.+..+.. +  .+++..|+.++.. ++++....+.++|+|+........+.+.+.+.+|.+..++..+  .+++..
T Consensus       477 iS~h~~~~k~~-f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~L  553 (708)
T PF05804_consen  477 ISQHDGPLKEL-F--VDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLL  553 (708)
T ss_pred             HHhcCchHHHH-H--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHH
Confidence            99985444433 3  3678888888864 5889999999999999975555665666679999999998754  467888


Q ss_pred             HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh
Q 009514          334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL  411 (533)
Q Consensus       334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L  411 (533)
                      .++..++.++.  ++.+...+.+.+.++.++.++.  ..|.++..+.+.++..+.... +.+..++.+.+ +...+..++
T Consensus       554 E~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~-~tr~~ll~~~~-~~~ylidL~  629 (708)
T PF05804_consen  554 EVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE-ETREVLLKETE-IPAYLIDLM  629 (708)
T ss_pred             HHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh-HHHHHHHhccc-hHHHHHHHh
Confidence            89999999875  5678888889999999999996  457899999999999998874 35666666544 778888888


Q ss_pred             ccCCchhHHHHHHHHHHHhccCChhhHHHH
Q 009514          412 RIASKAEIEIQGMYVLGNVATGKESHKEAV  441 (533)
Q Consensus       412 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  441 (533)
                      .+ .+++|+.-|=.+|.-++..+++....+
T Consensus       630 ~d-~N~~ir~~~d~~Ldii~e~d~~w~~ri  658 (708)
T PF05804_consen  630 HD-KNAEIRKVCDNALDIIAEYDEEWAERI  658 (708)
T ss_pred             cC-CCHHHHHHHHHHHHHHHHhCHHHHHHh
Confidence            87 999999988888888887766544444

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.79  E-value=8.1e-17  Score=150.08  Aligned_cols=471  Identities=13%  Similarity=0.060  Sum_probs=311.3

Q ss_pred             hhhcCCCcchhHHHHHHHHHhhcCchhHHHH----HhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccc
Q 009514           24 SLLNNESENVSGLGASIISHSCKTSLEQKLL----FDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP   98 (533)
Q Consensus        24 ~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i----~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~   98 (533)
                      +.....+..+...+.++++..+..+..|..+    +..|.+++|.+...+ +..+-+.+.++|+++|+++.+.+..+...
T Consensus        49 ~~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~l  128 (604)
T KOG4500|consen   49 SGIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNL  128 (604)
T ss_pred             cceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhc
Confidence            3334456777778888899888666555544    446778888888877 46899999999999999999988877664


Q ss_pred             cCcccHHHHHHHHhc-CCh-hhH--HHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-CC--CchhhhHHHHHHhh
Q 009514           99 DTGRTLSCIIEIVKD-RFA-RTR--LLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DP--GRVGDEASFAFSSL  171 (533)
Q Consensus        99 ~~~~~i~~l~~ll~~-~~~-~v~--~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~--~~~~~~a~~~L~~l  171 (533)
                      +....+-.+++-.-+ ++| ..+  ..+.+.|.|....+.. .+....+.|++|.|..++. +.  ....+.......++
T Consensus       129 gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~-l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nl  207 (604)
T KOG4500|consen  129 GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRE-LRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNL  207 (604)
T ss_pred             CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHH-HHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccH
Confidence            322233333332222 222 223  3455667776665543 4566788999999999987 32  22223322222233


Q ss_pred             hcC-CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC-CC------
Q 009514          172 IAE-KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DS------  243 (533)
Q Consensus       172 ~~~-~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~-~~------  243 (533)
                      .+- .+.......++.....++++|.+. ..+..++.++..++..+.+ +..+-.+.+.|.+..++++++. ++      
T Consensus       208 ls~~~e~~~~~~~d~sl~~~l~~ll~~~-v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d  285 (604)
T KOG4500|consen  208 LSFVCEMLYPFCKDCSLVFMLLQLLPSM-VREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTD  285 (604)
T ss_pred             HHHHHHhhhhhhccchHHHHHHHHHHHh-hccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHH
Confidence            211 111223344566667788888776 4677899999999988765 4677788899999998888864 11      


Q ss_pred             -HHHHHHHHHHHHHHhhccccccchhhhhcC-cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHH
Q 009514          244 -SDVRSAACMCLRSVSRSIKNLSAGSFMNET-IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV  321 (533)
Q Consensus       244 -~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~-~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~  321 (533)
                       ......++....-+....+...  ++...+ ++..++.+++++|......+.-+|+|+++....+ ..+++.|.++.|+
T Consensus       286 ~~~l~k~~~el~vllltGDeSMq--~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~  362 (604)
T KOG4500|consen  286 MLNLFKRIAELDVLLLTGDESMQ--KLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLI  362 (604)
T ss_pred             HHHHHHhhhhHhhhhhcCchHHH--HHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHH
Confidence             1223334444443433322222  234444 8889999999999999999999999999865544 4788889999999


Q ss_pred             HhhcC-----CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514          322 QLSKS-----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI  396 (533)
Q Consensus       322 ~ll~~-----~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  396 (533)
                      +.+..     ++..++.+++.||.|+....+  +|..+...|..+.++..++...|.++..-+++++-+..+.+.....+
T Consensus       363 ~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL  440 (604)
T KOG4500|consen  363 SCLMQEKDVDGNVERQHACLSALRNLMIPVS--NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACEL  440 (604)
T ss_pred             HHHHHhcCCCccchhHHHHHHHHHhccccCC--chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHH
Confidence            87654     356788899999999988554  78889999999999999999999999999999999887754222222


Q ss_pred             HhhcCchHHHHHHHhccCCch-hHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHH
Q 009514          397 FAEDGIILDAVGRQLRIASKA-EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWA  475 (533)
Q Consensus       397 ~~~~~~~~~~L~~~L~~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~  475 (533)
                      ... ...++.|+..=.+ ++- .|.-+..+.+..+...+. ..+.+..    .|..|++...+.++.+.+...+.+|..+
T Consensus       441 ~kn-~~l~ekLv~Wsks-~D~aGv~gESnRll~~lIkHs~-~kdv~~t----vpksg~ik~~Vsm~t~~hi~mqnEalVa  513 (604)
T KOG4500|consen  441 AKN-PELFEKLVDWSKS-PDFAGVAGESNRLLLGLIKHSK-YKDVILT----VPKSGGIKEKVSMFTKNHINMQNEALVA  513 (604)
T ss_pred             hcC-HHHHHHHHHhhhC-CccchhhhhhhHHHHHHHHhhH-hhhhHhh----ccccccHHHHHHHHHHhhHHHhHHHHHH
Confidence            221 1245555554334 443 366667777766665422 1222221    1237888999999999999999999998


Q ss_pred             HHhhcCCCCC------CcHHHHHHHHHCCcHHHHHhhhcC
Q 009514          476 VLNLTCSSSP------GSSGRLVKLHDAGIVSHVKNMVND  509 (533)
Q Consensus       476 L~~l~~~~~~------~~~~~~~~l~~~g~~~~L~~ll~~  509 (533)
                      +.-+....-.      .+.--+..+.+.|+-.....+...
T Consensus       514 l~~~~~~yl~~~~kd~ea~~l~~~lik~~~~~~~a~~I~~  553 (604)
T KOG4500|consen  514 LLSTESKYLIVIGKDLEAVFLAILLIKHGYANVAATIIAS  553 (604)
T ss_pred             HHHHHHHhccccchhHHHHHHHHHHHHhhhhhhhhHHhcC
Confidence            8776642111      111223455666665555555543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=2.2e-16  Score=154.46  Aligned_cols=494  Identities=14%  Similarity=0.133  Sum_probs=307.9

Q ss_pred             ccccCCCCCccccc-ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHH--H---hcCchHHHHHhhcC-ChHHH
Q 009514            2 IYQSKMAPKYDFLQ-EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLL--F---DAGVLKRLTSLLGG-SLIQR   74 (533)
Q Consensus         2 ~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i--~---~~g~i~~L~~lL~~-~~~v~   74 (533)
                      |++|+++++..+-. ++.+|.|..+|.+++...+|-|..+|.++|+.+.+...-  .   -.-.+|.++++.++ ++++|
T Consensus       112 ivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiR  191 (885)
T KOG2023|consen  112 IVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIR  191 (885)
T ss_pred             heeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHH
Confidence            78888888766654 789999999999999999999999999999776542211  1   12356777777776 78999


Q ss_pred             HHHHHHHHHHhcCChhh-hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHh
Q 009514           75 DASLESIATIFKNNPEV-VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL  153 (533)
Q Consensus        75 ~~al~aL~~l~~~~~~~-~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l  153 (533)
                      ..|+.|+.......+.. -..+     ...+..++.+-.+++++||...+..+..+....+.+..  ---.++++.+++.
T Consensus       192 s~A~~cvNq~i~~~~qal~~~i-----D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~--phl~~IveyML~~  264 (885)
T KOG2023|consen  192 SHAVGCVNQFIIIQTQALYVHI-----DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV--PHLDNIVEYMLQR  264 (885)
T ss_pred             HHHHhhhhheeecCcHHHHHHH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc--cchHHHHHHHHHH
Confidence            99999998865443322 1111     45677788888999999999999999998876543221  1124678888888


Q ss_pred             cCC-CCchhhhHHHHHHhhhcCCHHHHHHHHH--cCcHHHHHHhhhcCC----------C--------------------
Q 009514          154 LDD-PGRVGDEASFAFSSLIAEKEDMQKLAFE--VNGVDKLYNHLQKGS----------L--------------------  200 (533)
Q Consensus       154 l~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~L~~~~----------~--------------------  200 (533)
                      .++ +..+-.+|++....++... -+......  ...+|.|++-+..+.          .                    
T Consensus       265 tqd~dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~  343 (885)
T KOG2023|consen  265 TQDVDENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKE  343 (885)
T ss_pred             ccCcchhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchh
Confidence            775 4567788888777777543 22111111  133455544221110          0                    


Q ss_pred             ------------------------CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009514          201 ------------------------HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRS  256 (533)
Q Consensus       201 ------------------------~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~  256 (533)
                                              ++.+|...+.+|.-++.   -.++.+. .-.+|.+-+.|.++.|.+|+++.-+++.
T Consensus       344 ~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan---vf~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGA  419 (885)
T KOG2023|consen  344 HGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN---VFGDELL-PILLPLLKEHLSSEEWKVREAGVLALGA  419 (885)
T ss_pred             ccCccccccccccccccccccccccccHhhccHHHHHHHHH---hhHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHH
Confidence                                    02345444445544442   1111111 1246666667778999999999999999


Q ss_pred             Hhhccccccchhhh--hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514          257 VSRSIKNLSAGSFM--NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF-TTRRSTFIRLGGVKLLVQLSKSMDSTIRL  333 (533)
Q Consensus       257 ls~~~~~~~~~~~~--~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  333 (533)
                      ++..+-+.    ++  -...+|.|+++|.+..+-||.-+||+|+..+.-. .......+ ...+..|++.+-+++..+++
T Consensus       420 IAEGcM~g----~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~pvL~~ll~~llD~NK~VQE  494 (885)
T KOG2023|consen  420 IAEGCMQG----FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KPVLEGLLRRLLDSNKKVQE  494 (885)
T ss_pred             HHHHHhhh----cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HHHHHHHHHHHhcccHHHHH
Confidence            99863221    22  2346788899999999999999999998866411 11111122 13455555556678899999


Q ss_pred             HHHHHHHHhhccCChHhHH---HHHHh--------------------------------------hcHHHHH---hhhCC
Q 009514          334 NALRALRNLIFLAEDKCKE---EIFME--------------------------------------LTASLLA---SLICD  369 (533)
Q Consensus       334 ~al~aL~~l~~~~~~~~~~---~i~~~--------------------------------------~~~~~l~---~lL~~  369 (533)
                      +|+.++..+-...+++.-.   .++..                                      ..++.|+   .+|++
T Consensus       495 AAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd  574 (885)
T KOG2023|consen  495 AACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD  574 (885)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc
Confidence            9999998886654442211   11110                                      0122222   13333


Q ss_pred             CC-------------------------hhHHHHHHHHHHHh----hcCC---------------------------cchH
Q 009514          370 PE-------------------------PSVQEQALALVRNL----VDGR---------------------------INSV  393 (533)
Q Consensus       370 ~~-------------------------~~v~~~a~~~L~~l----~~~~---------------------------~~~~  393 (533)
                      +|                         +.|-..++.++.+.    +...                           ...+
T Consensus       575 ~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~i  654 (885)
T KOG2023|consen  575 SDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHI  654 (885)
T ss_pred             ccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhch
Confidence            33                         23444455554422    1111                           1111


Q ss_pred             HHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHH
Q 009514          394 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV  473 (533)
Q Consensus       394 ~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~  473 (533)
                      +.++...+ +++++...+.+ +.++|++.|...|+.++....++....+        .++++.+...+...+..+..+|+
T Consensus       655 e~Lva~sn-l~~lll~C~~D-~~peVRQS~FALLGDltk~c~~~v~p~~--------~~fl~~lg~Nl~~~~isv~nNA~  724 (885)
T KOG2023|consen  655 EPLVAQSN-LLDLLLQCLQD-EVPEVRQSAFALLGDLTKACFEHVIPNL--------ADFLPILGANLNPENISVCNNAI  724 (885)
T ss_pred             HHHhhhcc-HHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHhccchH--------HHHHHHHhhcCChhhchHHHHHH
Confidence            11111111 56677777777 8899999999999999986655555554        47778888888878889999999


Q ss_pred             HHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC--CCcHHHHHHHHHHHHhh
Q 009514          474 WAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQFNS  527 (533)
Q Consensus       474 ~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~aL~~~~~  527 (533)
                      |+++.++..   ...+....+  ..++..|...++.+  ...+-++.+-.++++-.
T Consensus       725 WAiGeia~k---~g~~~~~~v--~~vl~~L~~iin~~~~~~tllENtAITIGrLg~  775 (885)
T KOG2023|consen  725 WAIGEIALK---MGLKMKQYV--SPVLEDLITIINRQNTPKTLLENTAITIGRLGY  775 (885)
T ss_pred             HHHHHHHHH---hchhhhhHH--HHHHHHHHHHhcccCchHHHHHhhhhhhhhhhc
Confidence            999999952   112222221  12455666665533  22455666666666543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=3.5e-14  Score=148.31  Aligned_cols=434  Identities=15%  Similarity=0.105  Sum_probs=290.3

Q ss_pred             HHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc---C-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514           21 FLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG---G-SLIQRDASLESIATIFKNNPEVVSQFV   96 (533)
Q Consensus        21 ~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~---~-~~~v~~~al~aL~~l~~~~~~~~~~~~   96 (533)
                      .|....+.+.++|+..-+.+++.++++.     +-+ +|++.+--+..   + ++..|+.|+..|+.+...-++......
T Consensus        84 lL~~~~~E~~~~vr~k~~dviAeia~~~-----l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~  157 (1075)
T KOG2171|consen   84 LLEIIQSETEPSVRHKLADVIAEIARND-----LPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL  157 (1075)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHhc-----ccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH
Confidence            3444455677899999999999988432     222 55544443333   4 568999999999998654433211000


Q ss_pred             cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-----CCchhhhHHHHHHhh
Q 009514           97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-----PGRVGDEASFAFSSL  171 (533)
Q Consensus        97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~a~~~L~~l  171 (533)
                          ....+-+.+.+.+++..||..|++++..++...+........-...+|.++..+.+     +.+.-..+..+|..+
T Consensus       158 ----~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El  233 (1075)
T KOG2171|consen  158 ----DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL  233 (1075)
T ss_pred             ----HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence                11222234456677777999999999998876642112222234678888887762     233346778888888


Q ss_pred             hcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh--hhchHHHHHHhcCCCC------
Q 009514          172 IAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL--SLQVLKLVVDALAHDS------  243 (533)
Q Consensus       172 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~--~~~~l~~l~~~L~~~~------  243 (533)
                      +...+.+.+..+. ..+..-..+..+...+..+|..|+..|..++.+-+...+...  ....++.++..+.+..      
T Consensus       234 ~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~  312 (1075)
T KOG2171|consen  234 LESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS  312 (1075)
T ss_pred             HhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence            8777765443322 334555566666666788999999999998876443333222  2346777777775311      


Q ss_pred             ----------HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 009514          244 ----------SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR  313 (533)
Q Consensus       244 ----------~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~  313 (533)
                                ..-...|..+|-.++.+.+..    .+-....+.+-.++.++++.-|.+++.+|+.++.+..+.....+ 
T Consensus       313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~----~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-  387 (1075)
T KOG2171|consen  313 NEDDLDEDDEETPYRAAEQALDRLALHLGGK----QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-  387 (1075)
T ss_pred             cccccccccccCcHHHHHHHHHHHHhcCChh----hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-
Confidence                      124556778888887763321    23345566677778899999999999999999988776544433 


Q ss_pred             hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC-CChhHHHHHHHHHHHhhcCCcch
Q 009514          314 LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEPSVQEQALALVRNLVDGRINS  392 (533)
Q Consensus       314 ~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~  392 (533)
                      ..+++..+..++++++.||.+|+.+++.++.+-.|+..+.. ++-.++.|+..+.+ .++.|+..|+.++-|++..++..
T Consensus       388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~  466 (1075)
T KOG2171|consen  388 PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS  466 (1075)
T ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH
Confidence            35777888889999999999999999999887766554433 33346677777765 46799999999999999776543


Q ss_pred             HHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCC----hhH
Q 009514          393 VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND----SRL  468 (533)
Q Consensus       393 ~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~----~~v  468 (533)
                      +  +-.+-+.+++.+...|..++++.+++.+..+|+.+|....+.....++        .++|.|.++|++.+    ..+
T Consensus       467 ~--l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d--------~~Mp~L~~~L~n~~~~d~r~L  536 (1075)
T KOG2171|consen  467 I--LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFD--------RLMPLLKNFLQNADDKDLREL  536 (1075)
T ss_pred             H--HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHH--------HHHHHHHHHHhCCCchhhHHH
Confidence            2  222112266644445555588999999999999999866656666664        57789999998654    346


Q ss_pred             HHHHHHHHHhhcC
Q 009514          469 RTAAVWAVLNLTC  481 (533)
Q Consensus       469 ~~~a~~~L~~l~~  481 (533)
                      |-.+..+++-++.
T Consensus       537 rgktmEcisli~~  549 (1075)
T KOG2171|consen  537 RGKTMECLSLIAR  549 (1075)
T ss_pred             HhhHHHHHHHHHH
Confidence            6666666666654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.74  E-value=5.4e-16  Score=156.32  Aligned_cols=363  Identities=17%  Similarity=0.120  Sum_probs=271.0

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHH--H
Q 009514          102 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKED--M  178 (533)
Q Consensus       102 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~--~  178 (533)
                      -.++..+.++.+.++.+|.+|+.-+..++.... ..+..+.+.|+||.|+.++.. ..+++..|+++|.|+..+...  .
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~-~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDN-KIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhH-HHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence            467889999999999999999999999987664 356667778999999999994 578999999999999976554  5


Q ss_pred             HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHH-hcC-------C------CCH
Q 009514          179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-ALA-------H------DSS  244 (533)
Q Consensus       179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~-~L~-------~------~~~  244 (533)
                      .-.+.+++|++.++++|... .+.++++.+...|++|+++ +.++..++.. .+..|.. .+.       +      ...
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~  388 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHT-QDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDS  388 (717)
T ss_pred             chhhhhcCChHHHHHHHHhh-cchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccc
Confidence            55678899999999988865 3578999999999999987 4555555543 2222222 111       1      125


Q ss_pred             HHHHHHHHHHHHHhhccccccchhhhh-cCcHHHHHHhhc------CCCHHHHHHHHHHHHHHhcCCc------------
Q 009514          245 DVRSAACMCLRSVSRSIKNLSAGSFMN-ETIVIPLVRLLD------DTSTAVQVAALGAISNIVVDFT------------  305 (533)
Q Consensus       245 ~v~~~a~~~L~~ls~~~~~~~~~~~~~-~~~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~------------  305 (533)
                      .+-..+..||+|++......++. +.+ .|.|..|+..++      +.|....++|...+.|+.....            
T Consensus       389 ~vf~n~tgcLRNlSs~~~eaR~~-mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~  467 (717)
T KOG1048|consen  389 TVFRNVTGCLRNLSSAGQEAREQ-MRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA  467 (717)
T ss_pred             eeeehhhhhhccccchhHHHHHH-HhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence            67889999999998754555555 554 688999998885      4477788999999999875322            


Q ss_pred             -------------------hhHHH----------------------HHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhh
Q 009514          306 -------------------TRRST----------------------FIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLI  343 (533)
Q Consensus       306 -------------------~~~~~----------------------~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~  343 (533)
                                         ..+.+                      +.+..++.....++. +.++.+.++++.+|.|++
T Consensus       468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt  547 (717)
T KOG1048|consen  468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT  547 (717)
T ss_pred             cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence                               00011                      001123444333343 457889999999999998


Q ss_pred             ccCCh---HhHHHH-HHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc---
Q 009514          344 FLAED---KCKEEI-FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK---  416 (533)
Q Consensus       344 ~~~~~---~~~~~i-~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~---  416 (533)
                      -+..+   ..+..+ ..+.+++.++++|+.++..|...++.+|+||+.+-  ..+.++...  .++-|++.|.++..   
T Consensus       548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rnk~ligk~--a~~~lv~~Lp~~~~~~~  623 (717)
T KOG1048|consen  548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RNKELIGKY--AIPDLVRCLPGSGPSTS  623 (717)
T ss_pred             ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hhhhhhhcc--hHHHHHHhCcCCCCCcC
Confidence            65422   344445 67889999999999999999999999999999774  233444433  78888888876433   


Q ss_pred             --hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCC-hhHHHHHHHHHHhhc
Q 009514          417 --AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND-SRLRTAAVWAVLNLT  480 (533)
Q Consensus       417 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~-~~v~~~a~~~L~~l~  480 (533)
                        +++...+|.+|.|+...+......+++       .+.++.|+.+.++.. +.+.++|...+..|.
T Consensus       624 ~sedtv~~vc~tl~niv~~~~~nAkdl~~-------~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW  683 (717)
T KOG1048|consen  624 LSEDTVRAVCHTLNNIVRKNVLNAKDLLE-------IKGIPKLRLISKSQHSPKEFKAASSVLDVLW  683 (717)
T ss_pred             chHHHHHHHHHhHHHHHHHhHHHHHHHHh-------ccChHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence              688899999999999777666666765       677899999988754 478888888888877

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=9.5e-16  Score=138.73  Aligned_cols=293  Identities=20%  Similarity=0.219  Sum_probs=227.2

Q ss_pred             CcccccccchHHHHhhhc--CCCcchhHHHHHHHHHhhcC-chhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHH
Q 009514           10 KYDFLQEENMEFLLSLLN--NESENVSGLGASIISHSCKT-SLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATI   84 (533)
Q Consensus        10 ~~~l~~~~~i~~L~~lL~--~~~~~v~~~a~~~l~~~~~~-~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l   84 (533)
                      -+||++..++..++.+|.  +++.++.......+.+.|-. ..+|..+++.+.+|.+.+.|.+  -.++......++..|
T Consensus       138 qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l  217 (461)
T KOG4199|consen  138 QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRAL  217 (461)
T ss_pred             CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence            389999999999999998  45678888888899987754 4569999999999999998875  234444455677777


Q ss_pred             hcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhh
Q 009514           85 FKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGD  162 (533)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~  162 (533)
                      ..+++ +.-.|     +                             .. .+| ...+...|++..|++.+.  -++.+..
T Consensus       218 ~~dDD-iRV~f-----g-----------------------------~a-h~h-Ar~ia~e~~l~~L~Eal~A~~dp~~L~  260 (461)
T KOG4199|consen  218 LTDDD-IRVVF-----G-----------------------------QA-HGH-ARTIAKEGILTALTEALQAGIDPDSLV  260 (461)
T ss_pred             cCCCc-eeeec-----c-----------------------------hh-hHH-HHHHHHhhhHHHHHHHHHccCCccHHH
Confidence            66543 21111     0                             00 012 234667778888888887  2467778


Q ss_pred             hHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhH---HHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc
Q 009514          163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF---EGILLALADMCSKLECCRSRCLSLQVLKLVVDAL  239 (533)
Q Consensus       163 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~---~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L  239 (533)
                      +.+.+|..++-.++-+ +.+.+.||+..+++++.+++ +...|   ..++..|..+++++ +++..+++.|+.+.++.++
T Consensus       261 ~l~~tl~~lAVr~E~C-~~I~e~GGl~tl~~~i~d~n-~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~  337 (461)
T KOG4199|consen  261 SLSTTLKALAVRDEIC-KSIAESGGLDTLLRCIDDSN-EQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLA  337 (461)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHccCHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHH
Confidence            8889999999877766 56789999999999998864 33334   56788888998764 7889999999999999987


Q ss_pred             C--CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhC
Q 009514          240 A--HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DT-STAVQVAALGAISNIVVDFTTRRSTFIRLG  315 (533)
Q Consensus       240 ~--~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~  315 (533)
                      .  ..+|.|...++.++.-++...+..... +++.|+....++.|+ +| ...+|..|||.|+|++....++++.++ ..
T Consensus       338 ~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~-~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~  415 (461)
T KOG4199|consen  338 LRHSDDPLVIQEVMAIISILCLRSPDHSAK-AIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-AN  415 (461)
T ss_pred             HHcCCChHHHHHHHHHHHHHHhcCcchHHH-HHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hc
Confidence            4  568999999999999998654554444 789999999999997 44 568999999999999988878776666 56


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514          316 GVKLLVQLSKSMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       316 ~i~~L~~ll~~~~~~~~~~al~aL~~l~~  344 (533)
                      |++.|+...+..++..+..+-.+|..|-.
T Consensus       416 GiE~Li~~A~~~h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  416 GIEKLIRTAKANHETCEAAAKAALRDLGC  444 (461)
T ss_pred             cHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence            78999999998888888888888888743

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.9e-16  Score=154.92  Aligned_cols=440  Identities=15%  Similarity=0.161  Sum_probs=273.9

Q ss_pred             hcCchHHHHHhhcC----ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhh
Q 009514           56 DAGVLKRLTSLLGG----SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRN  131 (533)
Q Consensus        56 ~~g~i~~L~~lL~~----~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~  131 (533)
                      ++.++..+.++|++    +..+|..+...+-++-. .|+.         ...+.-++--.++.+..+|..|...|.|-.+
T Consensus         8 ~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pdf---------nnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr   77 (885)
T KOG2023|consen    8 DEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPDF---------NNYLIYILIRAKSEDVPTRSLAGLLLKNNVR   77 (885)
T ss_pred             cHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccch---------hceeeEEEecccccchhHHHHhhhhHhcccc
Confidence            35567788888874    45788888888888654 3433         2233334445567778888888888888665


Q ss_pred             cCCCcchhhhhHhhhHHHHHHhcCCCCc-hhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHH
Q 009514          132 ASPCYLQDVGIKTKLINNLLELLDDPGR-VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILL  210 (533)
Q Consensus       132 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~  210 (533)
                      ............ -.-...++-+.+.++ ++...--+++.+++ ..+.+.+   ..++|.|+++|.+++  ....+.|+.
T Consensus        78 ~~~~~~~~~~~~-yiKs~~l~~lgd~~~lIr~tvGivITTI~s-~~~~~~w---pelLp~L~~~L~s~d--~n~~EgA~~  150 (885)
T KOG2023|consen   78 GHYNSIPSEVLD-YIKSECLHGLGDASPLIRATVGIVITTIAS-TGGLQHW---PELLPQLCELLDSPD--YNTCEGAFG  150 (885)
T ss_pred             ccccCCChHHHH-HHHHHHHhhccCchHHHHhhhhheeeeeec-ccccccc---hhHHHHHHHHhcCCc--ccccchhHH
Confidence            543222211111 122233444555433 33333334444442 2222222   356899999887764  567899999


Q ss_pred             HHHHhhccchhhhHhhh-h---hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514          211 ALADMCSKLECCRSRCL-S---LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  286 (533)
Q Consensus       211 aL~~l~~~~~~~~~~~~-~---~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  286 (533)
                      ||..+|.++.+.-+.-. +   .-.+|.++++.+++++.+|..|..|+..+--.....  -...-..+++.|..+-.+++
T Consensus       151 AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFalanD~~  228 (885)
T KOG2023|consen  151 ALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALANDED  228 (885)
T ss_pred             HHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHccCCC
Confidence            99999976544322211 1   137899999999999999999999997764331111  11233578889999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh--hcHHHHH
Q 009514          287 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME--LTASLLA  364 (533)
Q Consensus       287 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~--~~~~~l~  364 (533)
                      ++||...|.++..|.....+ +-.-.-.++++.+++..++.++.+-..|+.....++...  .++..+...  ..+|.|+
T Consensus       229 ~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp--i~~~~L~p~l~kliPvLl  305 (885)
T KOG2023|consen  229 PEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP--ICKEVLQPYLDKLIPVLL  305 (885)
T ss_pred             HHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHH
Confidence            99999999999999854333 211222467777888888889999999999998888643  344443332  2345544


Q ss_pred             hhhC--CCC-----------------hhHHH-----------------------------HHHHHHHHhhcCCcchHHHH
Q 009514          365 SLIC--DPE-----------------PSVQE-----------------------------QALALVRNLVDGRINSVEYI  396 (533)
Q Consensus       365 ~lL~--~~~-----------------~~v~~-----------------------------~a~~~L~~l~~~~~~~~~~i  396 (533)
                      +-+.  +.|                 .+++-                             -.-|-|+.++...-+....+
T Consensus       306 ~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv  385 (885)
T KOG2023|consen  306 SGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV  385 (885)
T ss_pred             ccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh
Confidence            4331  000                 00000                             00122222221111111223


Q ss_pred             Hhhc--CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHH
Q 009514          397 FAED--GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW  474 (533)
Q Consensus       397 ~~~~--~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~  474 (533)
                      +.+.  ..+++.|...|.+ ..+.+++++..+++.+|.|+.   +.++.+     ...++|+++.+|.+..+-||.-+||
T Consensus       386 f~~elL~~l~PlLk~~L~~-~~W~vrEagvLAlGAIAEGcM---~g~~p~-----LpeLip~l~~~L~DKkplVRsITCW  456 (885)
T KOG2023|consen  386 FGDELLPILLPLLKEHLSS-EEWKVREAGVLALGAIAEGCM---QGFVPH-----LPELIPFLLSLLDDKKPLVRSITCW  456 (885)
T ss_pred             hHHHHHHHHHHHHHHHcCc-chhhhhhhhHHHHHHHHHHHh---hhcccc-----hHHHHHHHHHHhccCccceeeeeee
Confidence            3322  1145666666666 788999999999999998864   444442     2468899999999999999999999


Q ss_pred             HHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          475 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       475 ~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      +|++++.-....  .+.+.+.  -++..|.+.+-|++..|||.|..|+..+.+.|.
T Consensus       457 TLsRys~wv~~~--~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~  508 (885)
T KOG2023|consen  457 TLSRYSKWVVQD--SRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG  508 (885)
T ss_pred             eHhhhhhhHhcC--ChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence            999998411111  1222221  124445555557899999999999999977653

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=4.1e-15  Score=134.70  Aligned_cols=305  Identities=15%  Similarity=0.194  Sum_probs=244.2

Q ss_pred             chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHh
Q 009514          159 RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA  238 (533)
Q Consensus       159 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~  238 (533)
                      .+..++..+|..+....++    ++++.++..++++|.....+.++....+..+..-|-.++.+|+.+++.++++.+.+.
T Consensus       122 ~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~  197 (461)
T KOG4199|consen  122 SVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQV  197 (461)
T ss_pred             hHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Confidence            4567888888888776665    467888999999998776667777788888888888889999999999999999977


Q ss_pred             cC-CCCHHHHHHHHHHHHHHhhccccccch---------hhhhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchh
Q 009514          239 LA-HDSSDVRSAACMCLRSVSRSIKNLSAG---------SFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTR  307 (533)
Q Consensus       239 L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~---------~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~  307 (533)
                      |. ++..++....+++++-|... +..|-.         .|...|++..|++.++. -+|++....+.+|..++-. .+.
T Consensus       198 l~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~  275 (461)
T KOG4199|consen  198 LNREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEI  275 (461)
T ss_pred             HcccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHH
Confidence            76 44556778899999998765 222211         14677888999999973 4789999999999999964 567


Q ss_pred             HHHHHHhCcHHHHHHhhcCCC-HH---HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHH
Q 009514          308 RSTFIRLGGVKLLVQLSKSMD-ST---IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALAL  381 (533)
Q Consensus       308 ~~~~~~~~~i~~L~~ll~~~~-~~---~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~  381 (533)
                      .+.+.+.||+..+++.+.+.+ ..   ....++..|..++.+.  ..|..+++.|+.+.++.++.  +++|.|.+.++.+
T Consensus       276 C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D--svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~  353 (461)
T KOG4199|consen  276 CKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD--SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI  353 (461)
T ss_pred             HHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC--chHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence            779999999999999998744 33   3456778888887644  48999999999999999873  6789999999999


Q ss_pred             HHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc-hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 009514          382 VRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK-AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF  460 (533)
Q Consensus       382 L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~  460 (533)
                      +..++...|+....+++.|+  -...++-+.-+|. ..|+.++||+|.|++..+...+..++.        ..+..|+..
T Consensus       354 i~~l~LR~pdhsa~~ie~G~--a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~--------~GiE~Li~~  423 (461)
T KOG4199|consen  354 ISILCLRSPDHSAKAIEAGA--ADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA--------NGIEKLIRT  423 (461)
T ss_pred             HHHHHhcCcchHHHHHhcch--HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh--------ccHHHHHHH
Confidence            99999999998888888774  3344444554454 579999999999999988777777774        455889998


Q ss_pred             hccCChhHHHHHHHHHHhhcC
Q 009514          461 LQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       461 L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      -++.++..+..+..+|..|..
T Consensus       424 A~~~h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  424 AKANHETCEAAAKAALRDLGC  444 (461)
T ss_pred             HHhcCccHHHHHHHHHHhcCc
Confidence            888999999999999999886

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=9.5e-14  Score=145.15  Aligned_cols=472  Identities=15%  Similarity=0.135  Sum_probs=310.8

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      ....|+.-|.++|-+++..|-+.+.+....+.         .++.|..++..  ++.+|.-|+--+++++..   ++..+
T Consensus         5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~---~w~~l   72 (1075)
T KOG2171|consen    5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTK---HWSRL   72 (1075)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH---HhhcC
Confidence            34556666777888999999999998874333         67788888875  678998888888887643   33333


Q ss_pred             ccccCcccHHHHHHHH-hcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhc
Q 009514           96 VGPDTGRTLSCIIEIV-KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIA  173 (533)
Q Consensus        96 ~~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~  173 (533)
                      ........-..++..+ +.+.+.+|..-+.....+++..-    +. .+.+.++.|++..++ ++..|+.|..+|+.+..
T Consensus        73 ~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l----~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~  147 (1075)
T KOG2171|consen   73 SAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDL----PE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPE  147 (1075)
T ss_pred             CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc----cc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh
Confidence            2111123344556544 45677899998999888888542    22 567888888888874 67889999999998875


Q ss_pred             CCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh-chHHHHHHhc----CCCCHHHHH
Q 009514          174 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL-QVLKLVVDAL----AHDSSDVRS  248 (533)
Q Consensus       174 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~-~~l~~l~~~L----~~~~~~v~~  248 (533)
                      .-......-+ ....+.|.+.+.+++ .+ +|..++++++.++...+......... ..+|.++..+    +.++...-.
T Consensus       148 ~~~~~~~~~~-~~l~~lf~q~~~d~s-~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~  224 (1075)
T KOG2171|consen  148 TFGNTLQPHL-DDLLRLFSQTMTDPS-SP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK  224 (1075)
T ss_pred             hhccccchhH-HHHHHHHHHhccCCc-ch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence            4332211100 112344555565553 34 99999999999887654222222222 3455555544    566777777


Q ss_pred             HHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHH--HHHHhCcHHHHHHhh
Q 009514          249 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRS--TFIRLGGVKLLVQLS  324 (533)
Q Consensus       249 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~--~~~~~~~i~~L~~ll  324 (533)
                      .+..+|..+....+..-+.  .-..+++.-.++.++  -+..+|..|+..|..++..-+...+  ...-...++.++.++
T Consensus       225 ~~l~~l~El~e~~pk~l~~--~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~m  302 (1075)
T KOG2171|consen  225 SALEALIELLESEPKLLRP--HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMM  302 (1075)
T ss_pred             HHHHHHHHHHhhchHHHHH--HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhc
Confidence            8888888887765543322  122344555555543  4789999999999988864221111  112233455555554


Q ss_pred             cCC--C--------------HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          325 KSM--D--------------STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       325 ~~~--~--------------~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                      ...  +              ..-...|..++-.++.+-+++    .+-.-.++.+-.++.+++++.|..++.+|+.++.+
T Consensus       303 te~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~----~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG  378 (1075)
T KOG2171|consen  303 TEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK----QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEG  378 (1075)
T ss_pred             CCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh----hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            321  0              113455666776666655431    11112356677788999999999999999999999


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC-Chh
Q 009514          389 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSR  467 (533)
Q Consensus       389 ~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-~~~  467 (533)
                      +.+.....+.   .+++.+...|.+ +++.||.+|+.+++++++......+....       .-+.|.|+..+.++ +..
T Consensus       379 c~~~m~~~l~---~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~~-------e~l~~aL~~~ld~~~~~r  447 (1075)
T KOG2171|consen  379 CSDVMIGNLP---KILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKHH-------ERLPPALIALLDSTQNVR  447 (1075)
T ss_pred             cHHHHHHHHH---HHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHHH-------HhccHHHHHHhcccCchH
Confidence            8765444333   378888888888 99999999999999999865544444432       44556888888775 579


Q ss_pred             HHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHH-HHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          468 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS-HVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       468 v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~-~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      |+.+|+.++-|+...   ...+...... .+.+. .|..|+.++.+.+++.+.+||+...+-+.
T Consensus       448 V~ahAa~al~nf~E~---~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~  507 (1075)
T KOG2171|consen  448 VQAHAAAALVNFSEE---CDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ  507 (1075)
T ss_pred             HHHHHHHHHHHHHHh---CcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            999999999999963   1222222221 23444 55556678899999999999999877654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.71  E-value=5.1e-14  Score=147.63  Aligned_cols=445  Identities=19%  Similarity=0.201  Sum_probs=291.6

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      .+.+..+.++.+.+...+..+-..+..+...+.....+    .+..+.+-|.+ ++.+|..|+.++++++  +++...  
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~--  113 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE--  113 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH--
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh--
Confidence            56778888888888888888777777777555542222    45566666766 7789999999999987  455543  


Q ss_pred             ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcC
Q 009514           96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAE  174 (533)
Q Consensus        96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~  174 (533)
                            ..++.+.+++.++++.||..|+.++..+++..++.    .... .++.+.+++.| ++.++..|..++..+ ..
T Consensus       114 ------~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  114 ------PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             ------HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HC
T ss_pred             ------HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-cc
Confidence                  34777889999999999999999999999876431    2223 79999999985 456888888888888 33


Q ss_pred             CHHHHHHHHHcCcHHHHHHhhhc--CCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHH
Q 009514          175 KEDMQKLAFEVNGVDKLYNHLQK--GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACM  252 (533)
Q Consensus       175 ~~~~~~~~~~~~~l~~L~~~L~~--~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~  252 (533)
                      ++....     ..++.+++.|.+  ...+|-.+..+++.+..++...+.....   ...++.+..++++.++.|...++.
T Consensus       182 ~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~  253 (526)
T PF01602_consen  182 NDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIR  253 (526)
T ss_dssp             THHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHH
Confidence            333211     234444443331  1234667888888888887655443211   467888888888889999999999


Q ss_pred             HHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHH
Q 009514          253 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR  332 (533)
Q Consensus       253 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~  332 (533)
                      ++..+....+       ....++++|++++.+++++++..++.+|..++....    ..+. ..-..+..+..+++..+|
T Consensus       254 ~i~~l~~~~~-------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~----~~v~-~~~~~~~~l~~~~d~~Ir  321 (526)
T PF01602_consen  254 LIIKLSPSPE-------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP----PAVF-NQSLILFFLLYDDDPSIR  321 (526)
T ss_dssp             HHHHHSSSHH-------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH----HHHG-THHHHHHHHHCSSSHHHH
T ss_pred             HHHHhhcchH-------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc----hhhh-hhhhhhheecCCCChhHH
Confidence            9988765422       234678889999999999999999999999986541    2222 222223333447788899


Q ss_pred             HHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh-CCCChhHHHHHHHHHHHhhcCCcchHHHH-------HhhcC---
Q 009514          333 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALALVRNLVDGRINSVEYI-------FAEDG---  401 (533)
Q Consensus       333 ~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-------~~~~~---  401 (533)
                      ..++..|.+++..   .+-..     .++.+.+.+ ..++.+++..++..++.++...+......       +..++   
T Consensus       322 ~~~l~lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~  393 (526)
T PF01602_consen  322 KKALDLLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYV  393 (526)
T ss_dssp             HHHHHHHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGC
T ss_pred             HHHHHHHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccc
Confidence            9999999888652   22222     233444445 33355666666666665553322221111       11000   


Q ss_pred             --------------------chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 009514          402 --------------------IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL  461 (533)
Q Consensus       402 --------------------~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L  461 (533)
                                          .++..+.+.+.+-.+++++..++|++|..+...+. .. ..        ..++..+++..
T Consensus       394 ~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~--------~~~~~~l~~~~  463 (526)
T PF01602_consen  394 SNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SA--------PDILRSLIENF  463 (526)
T ss_dssp             HCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HH--------HHHHHHHHHHH
T ss_pred             cchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cH--------HHHHHHHHHhh
Confidence                                03455666666656778899999999988753322 00 11        23456677777


Q ss_pred             ccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc--CCCCcHHHHHHHHHHHHh
Q 009514          462 QSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN--DPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       462 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~--~~~~~v~~~a~~aL~~~~  526 (533)
                      ...+..+|.....++..+........  ...     .+.+.+.++..  +.+++||.||.+.+.-+.
T Consensus       464 ~~~~~~vk~~ilt~~~Kl~~~~~~~~--~~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~  523 (526)
T PF01602_consen  464 IEESPEVKLQILTALAKLFKRNPENE--VQN-----EILQFLLSLATEDSSDPEVRDRAREYLRLLN  523 (526)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHSCSTT--HHH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCchh--hHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence            77778899999999998885321111  111     23566777776  789999999988876553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.71  E-value=1.4e-14  Score=146.23  Aligned_cols=400  Identities=15%  Similarity=0.161  Sum_probs=277.9

Q ss_pred             ccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchh-HHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChh-
Q 009514           14 LQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLE-QKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPE-   90 (533)
Q Consensus        14 ~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~-~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~-   90 (533)
                      +....+|.-+.+|.+.++.+|-.|+..+.++|..+.. |..+.+.|+|+.|+.+|.+ ...|+..|+.+|.++.+.... 
T Consensus       230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~  309 (717)
T KOG1048|consen  230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD  309 (717)
T ss_pred             ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc
Confidence            4456778999999999999999999999999975544 7889999999999999997 789999999999999877655 


Q ss_pred             -hhhhhccccCcccHHHHHHHHhc-CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--------CC---
Q 009514           91 -VVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--------DP---  157 (533)
Q Consensus        91 -~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--------~~---  157 (533)
                       ..-++.   ..++++.++++++. .|.+++......|+||+...  ..++.+ ....++.|....-        ++   
T Consensus       310 ~NKlai~---~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D--~lK~~i-i~~al~tLt~~vI~P~Sgw~~~~~~~  383 (717)
T KOG1048|consen  310 SNKLAIK---ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND--ALKMLI-ITSALSTLTDNVIIPHSGWEEEPAPR  383 (717)
T ss_pred             ccchhhh---hcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh--HHHHHH-HHHHHHHHHHhhcccccccCCCCccc
Confidence             433443   35789999999986 78999999999999999873  234433 4446666655431        11   


Q ss_pred             ----CchhhhHHHHHHhhhcCCHHHHHHHHHcC-cHHHHHHhhh----cCCCCchhHHHHHHHHHHhhccchhhhHhhhh
Q 009514          158 ----GRVGDEASFAFSSLIAEKEDMQKLAFEVN-GVDKLYNHLQ----KGSLHPRRFEGILLALADMCSKLECCRSRCLS  228 (533)
Q Consensus       158 ----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~~L~----~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~  228 (533)
                          .++-..+.++|.|+.+...+.++.+.++. .|..|+.+++    ....+....+++++.+.+++-.   ...+ +.
T Consensus       384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr---l~~E-vp  459 (717)
T KOG1048|consen  384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR---LEAE-VP  459 (717)
T ss_pred             ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch---hhhh-cC
Confidence                23557899999999998888888888764 5688877665    2333456789999999998632   1111 10


Q ss_pred             hchHHHHHH---hcCCCCHHHHHHHHHHHHHHhhccccc-------cch-------hhhhcCcHHHHHHhhc-CCCHHHH
Q 009514          229 LQVLKLVVD---ALAHDSSDVRSAACMCLRSVSRSIKNL-------SAG-------SFMNETIVIPLVRLLD-DTSTAVQ  290 (533)
Q Consensus       229 ~~~l~~l~~---~L~~~~~~v~~~a~~~L~~ls~~~~~~-------~~~-------~~~~~~~i~~Lv~lL~-~~~~~v~  290 (533)
                      ....+.+-.   ....+.+.   ...+|+....+.....       ...       .+....++.+=..+|. +.+..+.
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~Tl  536 (717)
T KOG1048|consen  460 PKYRQVLANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTL  536 (717)
T ss_pred             HhhhhHhhcccccccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHH
Confidence            000000000   00001111   2233333333220100       000       0122334444333443 6688999


Q ss_pred             HHHHHHHHHHhcCCchhH----HHH-HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHh
Q 009514          291 VAALGAISNIVVDFTTRR----STF-IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS  365 (533)
Q Consensus       291 ~~a~~aL~nl~~~~~~~~----~~~-~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~  365 (533)
                      ++++++|-|++.......    ..+ .+..+++.+++++..+++.+...+..+|.||+.+  +.+|+.+ ...+++-|++
T Consensus       537 EasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rnk~li-gk~a~~~lv~  613 (717)
T KOG1048|consen  537 EASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRNKELI-GKYAIPDLVR  613 (717)
T ss_pred             HHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chhhhhh-hcchHHHHHH
Confidence            999999999997654322    233 5678999999999999999999999999999864  3345444 4778999999


Q ss_pred             hhCCC------ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhc
Q 009514          366 LICDP------EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA  431 (533)
Q Consensus       366 lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~  431 (533)
                      .|.+.      ++++...++.+|.|+...+......+++.+|  ++.|..+..+..++++.+.|...|..|=
T Consensus       614 ~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g--~~kL~~I~~s~~S~k~~kaAs~vL~~lW  683 (717)
T KOG1048|consen  614 CLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKG--IPKLRLISKSQHSPKEFKAASSVLDVLW  683 (717)
T ss_pred             hCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccC--hHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            98543      4688899999999999887777788888875  4666655555456677777777776654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.70  E-value=1.9e-14  Score=141.54  Aligned_cols=487  Identities=15%  Similarity=0.076  Sum_probs=315.3

Q ss_pred             HHhhhcCCCcchhHHHHHHHHH-hhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHHHHhcCChhhhhhhcc
Q 009514           22 LLSLLNNESENVSGLGASIISH-SCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNPEVVSQFVG   97 (533)
Q Consensus        22 L~~lL~~~~~~v~~~a~~~l~~-~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~~l~~~~~~~~~~~~~   97 (533)
                      +-.++. .++...-.|..-..+ ...++..+..+.+.|.++.+..++..   ++..+......++.......+....+.+
T Consensus        15 l~~L~~-~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~   93 (678)
T KOG1293|consen   15 LYRLLH-LDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR   93 (678)
T ss_pred             HHhhhc-CCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence            334444 334333334444444 44456667789999999999999974   4566655555666655444444344433


Q ss_pred             ccCcccHHHHHHHHhcCC-hhhHHHHHHHHHHhhhcCCC-cchhhhhHhhhHHHHHHhcC-CCCchhhhHHHHHHhhhcC
Q 009514           98 PDTGRTLSCIIEIVKDRF-ARTRLLASLCLIVIRNASPC-YLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAE  174 (533)
Q Consensus        98 ~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~i~~L~~ll~-~~~~~~~~a~~~L~~l~~~  174 (533)
                         ...++.+++++.+.+ .+++....+|+.++....+. ...+......+++.+..+++ +.......-+ .+...++.
T Consensus        94 ---~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~-~~~a~~s~  169 (678)
T KOG1293|consen   94 ---IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDV-SRAAHLSS  169 (678)
T ss_pred             ---HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhh-hhhccccc
Confidence               467889999999888 68999999999999887742 12333445567777777776 3222211111 12223344


Q ss_pred             CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHH---HhhccchhhhHh----hhhhchHH--HHHHhcCCCCHH
Q 009514          175 KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALA---DMCSKLECCRSR----CLSLQVLK--LVVDALAHDSSD  245 (533)
Q Consensus       175 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~---~l~~~~~~~~~~----~~~~~~l~--~l~~~L~~~~~~  245 (533)
                      .++.+.+..++|..+++.-++...  +...|.+|+..++   .+..+++.....    ....|+.+  .+.+++++++..
T Consensus       170 ~~~hq~Il~Na~i~ekI~~l~~~~--s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s  247 (678)
T KOG1293|consen  170 TKDHQLILCNAGILEKINILLMYL--SSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS  247 (678)
T ss_pred             cchhhheeccccchhhHHHHHHhh--hHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc
Confidence            456666677777777766655443  3668999999998   666666544332    33445665  566778888888


Q ss_pred             HHHHHHHHHHHHhhcccc---c-cchhhhhcC--cH--HHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcH
Q 009514          246 VRSAACMCLRSVSRSIKN---L-SAGSFMNET--IV--IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV  317 (533)
Q Consensus       246 v~~~a~~~L~~ls~~~~~---~-~~~~~~~~~--~i--~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i  317 (533)
                      .+..++.|+..+-+...+   . .+..+.+.|  .+  -..+.++.+|.......++...+.++..-+.......+...+
T Consensus       248 ~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~  327 (678)
T KOG1293|consen  248 ERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATL  327 (678)
T ss_pred             HHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhh
Confidence            889999999888654211   1 111123332  11  112333445554444555555555554334445556666777


Q ss_pred             HHHHHhhcC------CCHHHHH---HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          318 KLLVQLSKS------MDSTIRL---NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       318 ~~L~~ll~~------~~~~~~~---~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                      +.+++++..      ..+..|.   +-...+..++++.+...++.+.+......+..+....|.+....++..+.+++..
T Consensus       328 ~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srs  407 (678)
T KOG1293|consen  328 KTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRS  407 (678)
T ss_pred             hhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHH
Confidence            777776542      3343333   2233445555655556778888887777777777788889999998888877643


Q ss_pred             CcchHHHHHhhc--CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh
Q 009514          389 RINSVEYIFAED--GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS  466 (533)
Q Consensus       389 ~~~~~~~i~~~~--~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~  466 (533)
                          +..+-..-  ..+++.+++++.. |+..|+..++++|.|+.-...+.+..++.       .|++..+..++.++++
T Consensus       408 ----V~aL~tg~~~~dv~~plvqll~d-p~~~i~~~~lgai~NlVmefs~~kskfl~-------~ngId~l~s~~~~~~~  475 (678)
T KOG1293|consen  408 ----VSALRTGLKRNDVAQPLVQLLMD-PEIMIMGITLGAICNLVMEFSNLKSKFLR-------NNGIDILESMLTDPDF  475 (678)
T ss_pred             ----HHHHHcCCccchhHHHHHHHhhC-cchhHHHHHHHHHHHHHhhcccHHHHHHH-------cCcHHHHHHHhcCCCc
Confidence                22221110  1267888888866 88999999999999999876667888887       7999999999999999


Q ss_pred             hHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          467 RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       467 ~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      .+|..+.|+|.++.++.+  .......+.+-+ ...+..+.+|+++.|++++...|.|+.+...
T Consensus       476 n~r~~~~~~Lr~l~f~~d--e~~k~~~~~ki~-a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  476 NSRANSLWVLRHLMFNCD--EEEKFQLLAKIP-ANLILDLINDPDWAVQEQCFQLLRNLTCNSR  536 (678)
T ss_pred             hHHHHHHHHHHHHHhcch--HHHHHHHHHHhh-HHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence            999999999999998432  222223333333 3556777899999999999999999987643

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.69  E-value=1.8e-13  Score=140.07  Aligned_cols=395  Identities=15%  Similarity=0.131  Sum_probs=283.8

Q ss_pred             hHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhcc
Q 009514           19 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVG   97 (533)
Q Consensus        19 i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~   97 (533)
                      -+.++..|++.+.+.-+.++.+|.++-....-...  ..+..+.|...|.. ++.||.-++..++++..++......+. 
T Consensus        40 ~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~-  116 (503)
T PF10508_consen   40 EPVLFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV-  116 (503)
T ss_pred             HHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc-
Confidence            35588888888777788899999988754433332  45566777777776 789999999999999877766444332 


Q ss_pred             ccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCH
Q 009514           98 PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKE  176 (533)
Q Consensus        98 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~  176 (533)
                        +.+.++.++.++.+++..+...|..+|.+++....  ..+.+...+.++.|.+++.. ++.+|..+..++.++++.++
T Consensus       117 --~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~  192 (503)
T PF10508_consen  117 --DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP  192 (503)
T ss_pred             --CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence              36788899999999999999999999999998653  23446677779999999986 67789999999999999999


Q ss_pred             HHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCC--CH---HHH-HHH
Q 009514          177 DMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SS---DVR-SAA  250 (533)
Q Consensus       177 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~--~~---~v~-~~a  250 (533)
                      +....+.+.|.++.+++.|.+.  +.-++.+++..|..++. .+.....+.+.|+++.+.+++.+.  ++   .+. -..
T Consensus       193 ~~~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~  269 (503)
T PF10508_consen  193 EAAEAVVNSGLLDLLLKELDSD--DILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR  269 (503)
T ss_pred             HHHHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence            9888888999999999988874  57789999999999998 566778888999999999999743  22   222 233


Q ss_pred             HHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH-HHh-C----cHHHHHHhh
Q 009514          251 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF-IRL-G----GVKLLVQLS  324 (533)
Q Consensus       251 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~-~~~-~----~i~~L~~ll  324 (533)
                      .+..++++...+. ... -.-..++..|..++.+.|+..+..|..+++.++. ..+.+..+ ... +    .+..+-...
T Consensus       270 ~~f~g~la~~~~~-~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~  346 (503)
T PF10508_consen  270 MKFFGNLARVSPQ-EVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAI  346 (503)
T ss_pred             HHHHHHHHhcChH-HHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence            3666777664111 110 0113456667777888999999999999999995 44556555 332 2    344444556


Q ss_pred             cCCCHHHHHHHHHHHHHhhccCCh-------HhHHHHHHh---hcHH-HHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514          325 KSMDSTIRLNALRALRNLIFLAED-------KCKEEIFME---LTAS-LLASLICDPEPSVQEQALALVRNLVDGRINSV  393 (533)
Q Consensus       325 ~~~~~~~~~~al~aL~~l~~~~~~-------~~~~~i~~~---~~~~-~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  393 (533)
                      .+...++|..++.++.++.....+       ...+..++.   .... .+..+++.|=++++..+..+|..++.... .+
T Consensus       347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~W-g~  425 (503)
T PF10508_consen  347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPW-GQ  425 (503)
T ss_pred             cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHH-HH
Confidence            667788999999999999643322       112222222   2334 77788888889999999999999997754 34


Q ss_pred             HHHHhhcCchHHHHHHHhccCCch---hHHHHHHHHHHH
Q 009514          394 EYIFAEDGIILDAVGRQLRIASKA---EIEIQGMYVLGN  429 (533)
Q Consensus       394 ~~i~~~~~~~~~~L~~~L~~~~~~---~v~~~a~~~L~~  429 (533)
                      ..+....| +++.+...-.. ++.   +.|...+.+|.+
T Consensus       426 ~~i~~~~g-fie~lldr~~E-~~K~~ke~K~~ii~~l~~  462 (503)
T PF10508_consen  426 REICSSPG-FIEYLLDRSTE-TTKEGKEAKYDIIKALAK  462 (503)
T ss_pred             HHHHhCcc-HHhhhcCCCCC-CCHHHHHHHHHHHHHHHh
Confidence            45555555 66666432222 222   334455555554

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK09687 putative lyase; Provisional

Probab=99.69  E-value=8.6e-15  Score=137.55  Aligned_cols=255  Identities=16%  Similarity=0.132  Sum_probs=199.6

Q ss_pred             CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc
Q 009514          186 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       186 ~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      -.++.|..+|.+.  +..+|..++++|..+..           ...++.+..+++++++.+|..++++|+.+.....   
T Consensus        23 ~~~~~L~~~L~d~--d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---   86 (280)
T PRK09687         23 LNDDELFRLLDDH--NSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---   86 (280)
T ss_pred             ccHHHHHHHHhCC--CHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---
Confidence            3467888888765  47799999999987642           2347788889999999999999999999865311   


Q ss_pred             chhhhhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514          266 AGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~  344 (533)
                          .....++.|..+ ++++++.|+..|+.+|+++.......     ....++.+...+.++++.+|..++++|+.+..
T Consensus        87 ----~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~  157 (280)
T PRK09687         87 ----CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND  157 (280)
T ss_pred             ----chHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence                012456778776 67899999999999999986432211     12345667788888999999999999987732


Q ss_pred             cCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHH
Q 009514          345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM  424 (533)
Q Consensus       345 ~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~  424 (533)
                         +         ..++.|+++|+++++.|+..|+.+|+.+...++.           +.+.|...|.+ .++.|+..|+
T Consensus       158 ---~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~-----------~~~~L~~~L~D-~~~~VR~~A~  213 (280)
T PRK09687        158 ---E---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD-----------IREAFVAMLQD-KNEEIRIEAI  213 (280)
T ss_pred             ---H---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHhcC-CChHHHHHHH
Confidence               1         2588999999999999999999999998544433           66778888877 8999999999


Q ss_pred             HHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHH
Q 009514          425 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVK  504 (533)
Q Consensus       425 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~  504 (533)
                      +.|+.+-  +                ...+|.|++.|++++  ++..++.+|+++..               ..++|.|.
T Consensus       214 ~aLg~~~--~----------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~---------------~~a~p~L~  258 (280)
T PRK09687        214 IGLALRK--D----------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD---------------KTLLPVLD  258 (280)
T ss_pred             HHHHccC--C----------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---------------HhHHHHHH
Confidence            9998853  2                234588999999876  67889999999984               13689999


Q ss_pred             hhhc-CCCCcHHHHHHHHHHH
Q 009514          505 NMVN-DPCLDVKLRVKTALEQ  524 (533)
Q Consensus       505 ~ll~-~~~~~v~~~a~~aL~~  524 (533)
                      ++++ +++..++.+|.++|.+
T Consensus       259 ~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        259 TLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHhhCCChhHHHHHHHHHhc
Confidence            9996 7899999999999875

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=1.1e-15  Score=146.05  Aligned_cols=275  Identities=22%  Similarity=0.312  Sum_probs=220.7

Q ss_pred             HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh
Q 009514          244 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL  323 (533)
Q Consensus       244 ~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l  323 (533)
                      .....+++.+|..++++...+|++ +.+..+.+.|+++|++|+..+...+..+++|+...+++.+..+++.|.|..++.+
T Consensus       403 ~l~~~a~~l~LkS~SrSV~~LRTg-L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~  481 (743)
T COG5369         403 DLDFVAIVLFLKSMSRSVTFLRTG-LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL  481 (743)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhh-ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence            344567888999999998888888 8899999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc---hHHHHHhhc
Q 009514          324 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN---SVEYIFAED  400 (533)
Q Consensus       324 l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~~  400 (533)
                      +.+.+..+|.++.|.+.++.++...+.+-+.+...++..++.+..++...+|.+++..|+|+.++...   ..+..+...
T Consensus       482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~  561 (743)
T COG5369         482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT  561 (743)
T ss_pred             hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecC
Confidence            99999999999999999999988887888999999999999999999999999999999999986432   111112111


Q ss_pred             C--chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHh------------------
Q 009514          401 G--IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF------------------  460 (533)
Q Consensus       401 ~--~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~------------------  460 (533)
                      .  .+...+.+.+.. .+|--....+++|.+++..+...++.++++      .+++..+...                  
T Consensus       562 p~~ylfk~l~~k~e~-~np~~i~~~~yilv~~aa~d~~l~~~V~~q------~~~L~~i~eil~e~a~r~~L~pg~~~~~  634 (743)
T COG5369         562 PRRYLFKRLIDKYEE-NNPMEILEGCYILVRNAACDDTLDYIVQSQ------EDMLDSIFEILDEFAGRTPLSPGSKEEH  634 (743)
T ss_pred             hHHHHHHHHHHHHHh-cCchhhhhhHHHHHHHHhccchHHHHHHhH------HHHHHHHHHHHHHHcccCCCCCCCCccc
Confidence            1  145566666776 666666667999999998776555555543      2222222111                  


Q ss_pred             -----------------------h--------c----cCChhHHHHHHHHHHhhcCCCCC-----CcHHHHHHHHHCCcH
Q 009514          461 -----------------------L--------Q----SNDSRLRTAAVWAVLNLTCSSSP-----GSSGRLVKLHDAGIV  500 (533)
Q Consensus       461 -----------------------L--------~----~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~l~~~g~~  500 (533)
                                             +        +    +++.+.-.+..|.+.|+.|++++     .+.+|++.+++.|+-
T Consensus       635 v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~  714 (743)
T COG5369         635 VLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIR  714 (743)
T ss_pred             ccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHH
Confidence                                   0        0    12345777889999999997543     245899999999999


Q ss_pred             HHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          501 SHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       501 ~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                      +.|+.+..+.+++|++++.+||.++.
T Consensus       715 e~l~k~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         715 EWLVKIQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhhh
Confidence            99999999999999999999999874

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.67  E-value=2.5e-12  Score=131.75  Aligned_cols=395  Identities=14%  Similarity=0.161  Sum_probs=279.4

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHH
Q 009514          106 CIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFE  184 (533)
Q Consensus       106 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~  184 (533)
                      .++..+++.+.+.-..++.+|..+......  .  ....+..+.|...|.. ++.++..++..+.+++.+++.....+.+
T Consensus        42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~--~--~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~  117 (503)
T PF10508_consen   42 VLFDCLNTSNREQVELICDILKRLLSALSP--D--SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD  117 (503)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhccCH--H--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence            377777777676666777788887775421  1  2356788889888884 5789999999999999888887777888


Q ss_pred             cCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccc
Q 009514          185 VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL  264 (533)
Q Consensus       185 ~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~  264 (533)
                      .+.++.++.++.++  +..+...|..+|..++.+.+. ...+...+.++.|..++...+..+|..+..++.+++...+..
T Consensus       118 ~~l~~~i~~~L~~~--d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  118 NELLPLIIQCLRDP--DLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             ccHHHHHHHHHcCC--cHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence            89999999988776  477899999999999986544 356778888999999999889999999999999998764554


Q ss_pred             cchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC--H---HHH-HHHHHH
Q 009514          265 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD--S---TIR-LNALRA  338 (533)
Q Consensus       265 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~---~~~-~~al~a  338 (533)
                      ... +.+.|+++.++..++++|.=++..++..|..++. .+...+.+.+.|+++.|..++.+..  +   .+. -..+..
T Consensus       195 ~~~-~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  195 AEA-VVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHH-HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence            444 6778999999999999999999999999999997 6677889999999999999987532  2   122 223356


Q ss_pred             HHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH-HhhcCc---hHHHHHHHhccC
Q 009514          339 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI-FAEDGI---ILDAVGRQLRIA  414 (533)
Q Consensus       339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~~~~---~~~~L~~~L~~~  414 (533)
                      .++++...++.... .. ...+..+.+++.+.|+..+..|+.+++.++... +....+ ...++.   ++..+.....+ 
T Consensus       273 ~g~la~~~~~~v~~-~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~-  348 (503)
T PF10508_consen  273 FGNLARVSPQEVLE-LY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKS-  348 (503)
T ss_pred             HHHHHhcChHHHHH-HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcC-
Confidence            67776643221111 11 123456667788999999999999999998654 333444 333321   33333333333 


Q ss_pred             CchhHHHHHHHHHHHhccCChh-hHH---HHHHHhhHhhhhhhHH-HHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHH
Q 009514          415 SKAEIEIQGMYVLGNVATGKES-HKE---AVMDQLLLRAENKAQS-CIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSG  489 (533)
Q Consensus       415 ~~~~v~~~a~~~L~~l~~~~~~-~~~---~~~~~~~~~~~~~~~~-~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~  489 (533)
                      ...+++..++.+++++....+. ..+   .+.+..+.....+-.. .+..+++.|-+++|.++...|..++.    ....
T Consensus       349 ~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~----~~Wg  424 (503)
T PF10508_consen  349 GSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA----QPWG  424 (503)
T ss_pred             CchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc----CHHH
Confidence            6778999999999999543221 111   1222111111122223 77888888999999999999999995    2222


Q ss_pred             HHHHHHHCCcHHHHHhhhcCCCCcHHHH
Q 009514          490 RLVKLHDAGIVSHVKNMVNDPCLDVKLR  517 (533)
Q Consensus       490 ~~~~l~~~g~~~~L~~ll~~~~~~v~~~  517 (533)
                      ........|+++.|++--.+++++.++.
T Consensus       425 ~~~i~~~~gfie~lldr~~E~~K~~ke~  452 (503)
T PF10508_consen  425 QREICSSPGFIEYLLDRSTETTKEGKEA  452 (503)
T ss_pred             HHHHHhCccHHhhhcCCCCCCCHHHHHH
Confidence            3334455566666666555556655543

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.66  E-value=1.3e-14  Score=152.53  Aligned_cols=359  Identities=15%  Similarity=0.119  Sum_probs=259.2

Q ss_pred             HHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--C--CCchhhhHHHHHHhhhcCCHHHHHHHHH
Q 009514          109 EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--D--PGRVGDEASFAFSSLIAEKEDMQKLAFE  184 (533)
Q Consensus       109 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~  184 (533)
                      .++.......+..-.+-+..++.....  .-.+...|++|.|++++-  +  +.+.+..|-.+|.|++...++..+.-.+
T Consensus       201 sllsml~t~D~ee~ar~fLemSss~es--CaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE  278 (2195)
T KOG2122|consen  201 SLLSMLGTDDEEEMARTFLEMSSSPES--CAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRRE  278 (2195)
T ss_pred             HHhhhcccCCHHHHHHHHHHhccCchh--hHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHH
Confidence            333333333333334444444443321  234677899999999996  2  3567889999999999887775443333


Q ss_pred             cCcHHHHHH----------hhhcCC------CCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC-------
Q 009514          185 VNGVDKLYN----------HLQKGS------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-------  241 (533)
Q Consensus       185 ~~~l~~L~~----------~L~~~~------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~-------  241 (533)
                      ...++.|-+          ++....      .+......|+++|-.++ ++++.|..+.+.|+++.+-+++..       
T Consensus       279 ~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp  357 (2195)
T KOG2122|consen  279 KKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGP  357 (2195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence            333333221          222211      11223346777777776 568999999999999999988752       


Q ss_pred             -----CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chhHHHHHHhC
Q 009514          242 -----DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF-TTRRSTFIRLG  315 (533)
Q Consensus       242 -----~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~~~~  315 (533)
                           ....+|..+..+|.||++...+.+..-....|+|+.+|..|.+...++....+..|+||+=.- ...++.+.+.|
T Consensus       358 ~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~G  437 (2195)
T KOG2122|consen  358 ETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETG  437 (2195)
T ss_pred             CCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhh
Confidence                 134789999999999998755443331356799999999999888899999999999997533 33456677789


Q ss_pred             cHHHHHH-hhcCCCHHHHHHHHHHHHHhhccCChHhHHHH-HHhhcHHHHHhhhC----CCChhHHHHHHHHHHHhhcC-
Q 009514          316 GVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAEDKCKEEI-FMELTASLLASLIC----DPEPSVQEQALALVRNLVDG-  388 (533)
Q Consensus       316 ~i~~L~~-ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i-~~~~~~~~l~~lL~----~~~~~v~~~a~~~L~~l~~~-  388 (533)
                      -+..|.. .++...+......+.||.||..+.. ++|..+ --.|.+.+|+.+|.    +....+.+.+-++|+|.+.. 
T Consensus       438 sVtaLa~~al~~~kEsTLKavLSALWNLSAHct-eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I  516 (2195)
T KOG2122|consen  438 SVTALAACALRNKKESTLKAVLSALWNLSAHCT-ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI  516 (2195)
T ss_pred             hHHHHHHHHHHhcccchHHHHHHHHhhhhhccc-ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh
Confidence            9998885 4566666778888999999987664 355444 44678999999995    34578899999999998743 


Q ss_pred             --CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh
Q 009514          389 --RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS  466 (533)
Q Consensus       389 --~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~  466 (533)
                        +....+.+..+.  ++..|.++|.+ .+-.|..++|.+|-||...++...+.+.+       .|+++.|.+++++.+.
T Consensus       517 At~E~yRQILR~~N--CLq~LLQ~LKS-~SLTiVSNaCGTLWNLSAR~p~DQq~LwD-------~gAv~mLrnLIhSKhk  586 (2195)
T KOG2122|consen  517 ATCEDYRQILRRHN--CLQTLLQHLKS-HSLTIVSNACGTLWNLSARSPEDQQMLWD-------DGAVPMLRNLIHSKHK  586 (2195)
T ss_pred             hccchHHHHHHHhh--HHHHHHHHhhh-cceEEeecchhhhhhhhcCCHHHHHHHHh-------cccHHHHHHHHhhhhh
Confidence              333444445555  88899898988 67788999999999999988866666654       8999999999999999


Q ss_pred             hHHHHHHHHHHhhcC
Q 009514          467 RLRTAAVWAVLNLTC  481 (533)
Q Consensus       467 ~v~~~a~~~L~~l~~  481 (533)
                      .+-..++.+|.|+..
T Consensus       587 MIa~GSaaALrNLln  601 (2195)
T KOG2122|consen  587 MIAMGSAAALRNLLN  601 (2195)
T ss_pred             hhhhhHHHHHHHHhc
Confidence            999999999999885

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.65  E-value=6.5e-14  Score=147.38  Aligned_cols=379  Identities=15%  Similarity=0.132  Sum_probs=275.4

Q ss_pred             HHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCC----hHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           20 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGS----LIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        20 ~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      ..|+.+|+..|   ++--+..+..++..++.=..++..|+++.|+++|.+.    ...|..|-.+|-+|.+..|+..+  
T Consensus       200 ~sllsml~t~D---~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr--  274 (2195)
T KOG2122|consen  200 NSLLSMLGTDD---EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR--  274 (2195)
T ss_pred             hHHhhhcccCC---HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh--
Confidence            45666666544   4455566777777888888899999999999999862    36778888899999988887643  


Q ss_pred             ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhh-hHHHHHHhhhcC
Q 009514           96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGD-EASFAFSSLIAE  174 (533)
Q Consensus        96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~-~a~~~L~~l~~~  174 (533)
                           +.-...++.++..    ++.+.. .++.......           .     .....+.+-+. .|..+|.+++.+
T Consensus       275 -----~RRE~kvL~lLeQ----IraYC~-~~~~~lqar~-----------~-----~~apa~~~H~lcaA~~~lMK~SFD  328 (2195)
T KOG2122|consen  275 -----GRREKKVLHLLEQ----IRAYCE-TCWTWLQARG-----------P-----AIAPASDEHQLCAALCTLMKLSFD  328 (2195)
T ss_pred             -----hHHHHHHHHHHHH----HHHHHH-HHHHHHHhcC-----------C-----CCCCcccchhhHHHHHHHHHhhcc
Confidence                 1112223332221    111111 1111111100           0     00011112222 555667777655


Q ss_pred             CHHHHHHHHHcCcHHHHHHhhhcCC------C----CchhHHHHHHHHHHhhccchhhhHhhh-hhchHHHHHHhcCCCC
Q 009514          175 KEDMQKLAFEVNGVDKLYNHLQKGS------L----HPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDS  243 (533)
Q Consensus       175 ~~~~~~~~~~~~~l~~L~~~L~~~~------~----~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~l~~~L~~~~  243 (533)
                       ++.++.+.+.|+++.+-+++.-..      .    .-.+|.++.++|.||...+..++..+. ..|++..+|..|.+..
T Consensus       329 -EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p  407 (2195)
T KOG2122|consen  329 -EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP  407 (2195)
T ss_pred             -HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh
Confidence             456788889999988888665321      0    123789999999999998877776666 4589999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccc-cccchhhhhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchhHHHHHH-hCcHHHH
Q 009514          244 SDVRSAACMCLRSVSRSIK-NLSAGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLL  320 (533)
Q Consensus       244 ~~v~~~a~~~L~~ls~~~~-~~~~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~~~i~~L  320 (533)
                      .++..-.+.+|+||+|..+ +.+.. +.+.|-+..|+.. |+........+.+.||+||+.++.+++..|.. .|++..|
T Consensus       408 eeL~QV~AsvLRNLSWRAD~nmKkv-LrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFL  486 (2195)
T KOG2122|consen  408 EELLQVYASVLRNLSWRADSNMKKV-LRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFL  486 (2195)
T ss_pred             HHHHHHHHHHHHhccccccccHHHH-HHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHH
Confidence            8999999999999998744 34444 6778889988885 45566678899999999999999888877775 5888999


Q ss_pred             HHhhcCCC----HHHHHHHHHHHHHhhcc--CChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHH
Q 009514          321 VQLSKSMD----STIRLNALRALRNLIFL--AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE  394 (533)
Q Consensus       321 ~~ll~~~~----~~~~~~al~aL~~l~~~--~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  394 (533)
                      +.+|....    -.+.+.+-..|.|....  .....|+.+.+...+..|++.|++.+..+..++|++|.||+..+++..+
T Consensus       487 Vg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq  566 (2195)
T KOG2122|consen  487 VGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQ  566 (2195)
T ss_pred             HhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHH
Confidence            99987642    45677777777776432  2335788888999999999999999999999999999999999999999


Q ss_pred             HHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCC
Q 009514          395 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK  434 (533)
Q Consensus       395 ~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~  434 (533)
                      .++..+  .+..|..++.+ .+..+-..++.+|-|+....
T Consensus       567 ~LwD~g--Av~mLrnLIhS-KhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  567 MLWDDG--AVPMLRNLIHS-KHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             HHHhcc--cHHHHHHHHhh-hhhhhhhhHHHHHHHHhcCC
Confidence            999988  78888777776 77888888889999988654

>PRK09687 putative lyase; Provisional

Probab=99.60  E-value=1.5e-13  Score=129.18  Aligned_cols=225  Identities=10%  Similarity=0.050  Sum_probs=175.0

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 009514          231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST  310 (533)
Q Consensus       231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~  310 (533)
                      -++.|.+.|.+.+..+|..++++|..+.            .....+.+..++.++++.+|..|+++|+.+-.....    
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~------------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRG------------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcC------------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            4778899999999999999999997653            235667888899999999999999999998642211    


Q ss_pred             HHHhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514          311 FIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       311 ~~~~~~i~~L~~l-l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~  389 (533)
                        ....++.|..+ ++++++.||..++.+|+++...... .     ....++.+...+.++++.|+..++++|.++... 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL-Y-----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-c-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-
Confidence              12456777766 6788899999999999998643211 0     111345566778899999999999999876432 


Q ss_pred             cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHH
Q 009514          390 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR  469 (533)
Q Consensus       390 ~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~  469 (533)
                       .           .++.|...|.+ +++.|+..|+++|+++..+++                .+++.|+..|.+.+..||
T Consensus       159 -~-----------ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~----------------~~~~~L~~~L~D~~~~VR  209 (280)
T PRK09687        159 -A-----------AIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP----------------DIREAFVAMLQDKNEEIR  209 (280)
T ss_pred             -H-----------HHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH----------------HHHHHHHHHhcCCChHHH
Confidence             1           67888888887 888999999999999843332                234678899999999999


Q ss_pred             HHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          470 TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       470 ~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                      ..|+++|+.+-.               ..++|.|++.+++++  ++.+|..||+.|-
T Consensus       210 ~~A~~aLg~~~~---------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig  249 (280)
T PRK09687        210 IEAIIGLALRKD---------------KRVLSVLIKELKKGT--VGDLIIEAAGELG  249 (280)
T ss_pred             HHHHHHHHccCC---------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence            999999998763               136899999998644  7788888888774

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.60  E-value=3.4e-13  Score=147.93  Aligned_cols=277  Identities=20%  Similarity=0.195  Sum_probs=204.0

Q ss_pred             HhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchh
Q 009514          143 KTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC  221 (533)
Q Consensus       143 ~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~  221 (533)
                      ....++.|++.|.+ ++.+|..|+..|..+..           .+.++.|+..|.++  ++.+|..|+.+|..+....+ 
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~~-  684 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDG--AAAVRRAAAEGLRELVEVLP-  684 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccC-
Confidence            34566777787874 46788888887776531           23467788877554  47788888888877642111 


Q ss_pred             hhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 009514          222 CRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV  301 (533)
Q Consensus       222 ~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~  301 (533)
                               -.+.+...|+++++.||..++.+|..+..             +-...|++.|+++++.++..|+.+|+.+-
T Consensus       685 ---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-------------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~  742 (897)
T PRK13800        685 ---------PAPALRDHLGSPDPVVRAAALDVLRALRA-------------GDAALFAAALGDPDHRVRIEAVRALVSVD  742 (897)
T ss_pred             ---------chHHHHHHhcCCCHHHHHHHHHHHHhhcc-------------CCHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence                     13456677888888999988888876532             11235777888999999999999987642


Q ss_pred             cCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHH
Q 009514          302 VDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALAL  381 (533)
Q Consensus       302 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~  381 (533)
                                    ..+.|..++.++++.+|..+..+|..+.....          ...+.|.++++++++.|+..++.+
T Consensus       743 --------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~----------~~~~~L~~ll~D~d~~VR~aA~~a  798 (897)
T PRK13800        743 --------------DVESVAGAATDENREVRIAVAKGLATLGAGGA----------PAGDAVRALTGDPDPLVRAAALAA  798 (897)
T ss_pred             --------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc----------hhHHHHHHHhcCCCHHHHHHHHHH
Confidence                          12346678888999999999999988843221          236778899999999999999999


Q ss_pred             HHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 009514          382 VRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL  461 (533)
Q Consensus       382 L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L  461 (533)
                      |.++.....            +...+...|.+ +++.|+..|+.+|+.+..                  ...++.|+.+|
T Consensus       799 Lg~~g~~~~------------~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~------------------~~a~~~L~~~L  847 (897)
T PRK13800        799 LAELGCPPD------------DVAAATAALRA-SAWQVRQGAARALAGAAA------------------DVAVPALVEAL  847 (897)
T ss_pred             HHhcCCcch------------hHHHHHHHhcC-CChHHHHHHHHHHHhccc------------------cchHHHHHHHh
Confidence            998864321            33455566766 789999999999987642                  12347889999


Q ss_pred             ccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHH
Q 009514          462 QSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ  524 (533)
Q Consensus       462 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~  524 (533)
                      ++++..||..|+++|..+.     +.+         ...+.|.+.++|.+++|+..|..||..
T Consensus       848 ~D~~~~VR~~A~~aL~~~~-----~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        848 TDPHLDVRKAAVLALTRWP-----GDP---------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             cCCCHHHHHHHHHHHhccC-----CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            9999999999999999973     111         136788899999999999999999864

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=3.3e-12  Score=127.65  Aligned_cols=470  Identities=15%  Similarity=0.132  Sum_probs=277.8

Q ss_pred             cchHHHHhhhcCCCcc-hhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC------ChHHHHHHHHHHHHHhcCCh
Q 009514           17 ENMEFLLSLLNNESEN-VSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIATIFKNNP   89 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~-v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~v~~~al~aL~~l~~~~~   89 (533)
                      +.++.|++...++.+. +++.++.+|+.+|.+-+-+  ......-..|..+..+      +..||-.|+.||.+=-+...
T Consensus       129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe--vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~  206 (859)
T KOG1241|consen  129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE--VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK  206 (859)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH--HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence            4555666666655555 8899999999999654433  2222233445555442      45899999999977221111


Q ss_pred             hhhhhhccccCcccH-HHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-CCCchhhhHHHH
Q 009514           90 EVVSQFVGPDTGRTL-SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFA  167 (533)
Q Consensus        90 ~~~~~~~~~~~~~~i-~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~a~~~  167 (533)
                         ..|........| ..+.+..++++.++|.+|..||..+....-..... -.....++.-+.-+. +++.+...+.+.
T Consensus       207 ---~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~-yM~~alfaitl~amks~~deValQaiEF  282 (859)
T KOG1241|consen  207 ---ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP-YMEQALFAITLAAMKSDNDEVALQAIEF  282 (859)
T ss_pred             ---HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence               011111112233 34556788999999999999999987654221111 111223333233333 344454444433


Q ss_pred             HHhhhcCCHHHH---------------HHHH---HcCcHHHHHHhhhcCCC-----------------------------
Q 009514          168 FSSLIAEKEDMQ---------------KLAF---EVNGVDKLYNHLQKGSL-----------------------------  200 (533)
Q Consensus       168 L~~l~~~~~~~~---------------~~~~---~~~~l~~L~~~L~~~~~-----------------------------  200 (533)
                      =++++...-+..               ..+.   -.+.+|.|+++|...++                             
T Consensus       283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv  362 (859)
T KOG1241|consen  283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV  362 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch
Confidence            333322111100               0000   01345677776665321                             


Q ss_pred             --------------CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc
Q 009514          201 --------------HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA  266 (533)
Q Consensus       201 --------------~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~  266 (533)
                                    +++.|+.++.+++.+-...+..+..-...+++|.++.++.+++--++..++|+++.++...+..+.
T Consensus       363 ~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~  442 (859)
T KOG1241|consen  363 PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII  442 (859)
T ss_pred             hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc
Confidence                          234678889999888776665555555678999999999999999999999999999877554332


Q ss_pred             hhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH---------HHHHHhCcHHHHHHhhcC---CCHHHHHH
Q 009514          267 GSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR---------STFIRLGGVKLLVQLSKS---MDSTIRLN  334 (533)
Q Consensus       267 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~---------~~~~~~~~i~~L~~ll~~---~~~~~~~~  334 (533)
                      ......+.++.+++-|. +.|.+...+||++.+|+....+..         ..+. ..++..|++....   ....+|..
T Consensus       443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y-~~ii~~Ll~~tdr~dgnqsNLR~A  520 (859)
T KOG1241|consen  443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFY-EAIIGSLLKVTDRADGNQSNLRSA  520 (859)
T ss_pred             cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhH-HHHHHHHHhhccccccchhhHHHH
Confidence            21233444555555554 578999999999999984322110         1111 1345555555544   23679999


Q ss_pred             HHHHHHHhhccCChHhHHHHHHhh--cHHHHHhh-----hCCCC----hhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 009514          335 ALRALRNLIFLAEDKCKEEIFMEL--TASLLASL-----ICDPE----PSVQEQALALVRNLVDGRINSVEYIFAEDGII  403 (533)
Q Consensus       335 al~aL~~l~~~~~~~~~~~i~~~~--~~~~l~~l-----L~~~~----~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~  403 (533)
                      |..+|..+...++.++...+...-  .+..|-+.     +...+    .++|...+..|..+...-...   +.+..+++
T Consensus       521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~---~~~~~d~i  597 (859)
T KOG1241|consen  521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD---IREVSDQI  597 (859)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc---chhHHHHH
Confidence            999999999877655554443321  12222222     22222    355666666666665332221   22222237


Q ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHhhcCC
Q 009514          404 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCS  482 (533)
Q Consensus       404 ~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~~l~~~  482 (533)
                      +..+.+++.+-.+.-+.+.++.+++.++..-.......+        ..+.|.|..-|+ -.++.|+..|++.++.++. 
T Consensus       598 M~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--------~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~r-  668 (859)
T KOG1241|consen  598 MGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--------PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLAR-  668 (859)
T ss_pred             HHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--------HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH-
Confidence            888889888834456788888888888764333344444        356788888884 4678999999999999994 


Q ss_pred             CCCCcHHHHHHHHHCCcHHHHHhhhcCC
Q 009514          483 SSPGSSGRLVKLHDAGIVSHVKNMVNDP  510 (533)
Q Consensus       483 ~~~~~~~~~~~l~~~g~~~~L~~ll~~~  510 (533)
                         .-.+.+..++ .++...|++-|.++
T Consensus       669 ---aL~~~i~py~-d~~mt~Lvq~Lss~  692 (859)
T KOG1241|consen  669 ---ALEDDILPYC-DELMTVLVQCLSSP  692 (859)
T ss_pred             ---HHHhhhhhHH-HHHHHHHHHHccCc
Confidence               1122233333 34567788877754

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.58  E-value=3.1e-12  Score=119.86  Aligned_cols=437  Identities=11%  Similarity=0.026  Sum_probs=298.8

Q ss_pred             ChHHHHHHHHHHHHHhcCChhhhhhhccc-cCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHH
Q 009514           70 SLIQRDASLESIATIFKNNPEVVSQFVGP-DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLIN  148 (533)
Q Consensus        70 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~-~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~  148 (533)
                      +..++.....|++..+.. +.-+..|.+. -..+.+..+.+..+|++..+.....++|.|++..+.+ .++.+...|+-+
T Consensus        55 ~~tv~~~qssC~A~~sk~-ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E-~R~a~~~lgGaq  132 (604)
T KOG4500|consen   55 SDTVYLFQSSCLADRSKN-EVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNE-NRAAFFNLGGAQ  132 (604)
T ss_pred             cchhhhhhHHHHHHHhhh-HHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCch-hHHHHHhcCCce
Confidence            345666666777777643 2222333221 1134556666667788888999999999999988754 677788889977


Q ss_pred             HHHHhcC----CCC----chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch
Q 009514          149 NLLELLD----DPG----RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE  220 (533)
Q Consensus       149 ~L~~ll~----~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~  220 (533)
                      .+++.|+    .+.    ....-+.+.|.|-.-++++.++.+.+.|.++.|...+.-...+...-+..+-.+.++.+.-.
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~  212 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC  212 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence            7777775    222    33456778999999999999999999999999988665433334445555555555554322


Q ss_pred             h-hhHhhhhhchHHHHHHhcCC-CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC-C-------CHHHH
Q 009514          221 C-CRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-T-------STAVQ  290 (533)
Q Consensus       221 ~-~~~~~~~~~~l~~l~~~L~~-~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~-------~~~v~  290 (533)
                      + ......+....-.+++++.. .+++.+......+...+.+ +..+-. +.+.|.++.++.+++. +       .-...
T Consensus       213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~-la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLS-LAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeee-hhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence            2 23344456677777777764 3667777778888888877 444444 7888999999988864 1       12334


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHhC-cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-
Q 009514          291 VAALGAISNIVVDFTTRRSTFIRLG-GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-  368 (533)
Q Consensus       291 ~~a~~aL~nl~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-  368 (533)
                      ..++.-..-+..+.+. -+++...+ .+..+...+.+.+......+.-+++|+++..+  ....+++.+.+.-++.+|. 
T Consensus       291 k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~--~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  291 KRIAELDVLLLTGDES-MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD--ICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHHHHHH
Confidence            4555555555554433 34555555 67888888999999999999999999998544  6677788888888888874 


Q ss_pred             ----CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHH
Q 009514          369 ----DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ  444 (533)
Q Consensus       369 ----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  444 (533)
                          +++.++|..++.+|+|+.-.-+ ....+...|  +.+.+...+.. ..|.++-.-...+..+-.+.+.....+.. 
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aG--vteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL~k-  442 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAG--VTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACELAK-  442 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhccccCC-chhhccccc--hHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHHhc-
Confidence                4678899999999999986543 234555555  67777777776 45555555566666655554433333333 


Q ss_pred             hhHhhhhhhHHHHHHhhccCChh-HHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHH
Q 009514          445 LLLRAENKAQSCIIKFLQSNDSR-LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE  523 (533)
Q Consensus       445 ~~~~~~~~~~~~lv~~L~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~  523 (533)
                           ....+..|+.--+++|.. |--+....+..+..  .+-..+-+..+.++|+++.++.+.....-..+..|.-||-
T Consensus       443 -----n~~l~ekLv~Wsks~D~aGv~gESnRll~~lIk--Hs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~  515 (604)
T KOG4500|consen  443 -----NPELFEKLVDWSKSPDFAGVAGESNRLLLGLIK--HSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALL  515 (604)
T ss_pred             -----CHHHHHHHHHhhhCCccchhhhhhhHHHHHHHH--hhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHH
Confidence                 245667778887888864 77788888888875  2224455677888999999999988777777777777765


Q ss_pred             HH
Q 009514          524 QF  525 (533)
Q Consensus       524 ~~  525 (533)
                      .+
T Consensus       516 ~~  517 (604)
T KOG4500|consen  516 ST  517 (604)
T ss_pred             HH
Confidence            54

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.58  E-value=1.4e-12  Score=143.18  Aligned_cols=274  Identities=18%  Similarity=0.135  Sum_probs=212.0

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHH
Q 009514          103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKL  181 (533)
Q Consensus       103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~  181 (533)
                      .++.|+..++|+++.||..|+..|..+..            ...+|.|.+.|++ +..++..|+..|..+....+     
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-----  684 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-----  684 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----
Confidence            45677788999999999999999886432            3478899999985 46799999999887753221     


Q ss_pred             HHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc
Q 009514          182 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSI  261 (533)
Q Consensus       182 ~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~  261 (533)
                           ..+.+...|.++  ++.+|..++.+|..+...+            ...+++.|+++++.||..|+.+|..+.   
T Consensus       685 -----~~~~L~~~L~~~--d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~---  742 (897)
T PRK13800        685 -----PAPALRDHLGSP--DPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVD---  742 (897)
T ss_pred             -----chHHHHHHhcCC--CHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhccc---
Confidence                 124566667654  5789999999988764211            235678899999999999999987641   


Q ss_pred             ccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009514          262 KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN  341 (533)
Q Consensus       262 ~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~  341 (533)
                                  ..+.|..++.+++++||..++.+|+.+....         ...++.|..+++++++.+|..|+.+|++
T Consensus       743 ------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~  801 (897)
T PRK13800        743 ------------DVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAE  801 (897)
T ss_pred             ------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence                        1235778899999999999999999886422         1347888899999999999999999999


Q ss_pred             hhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHH
Q 009514          342 LIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI  421 (533)
Q Consensus       342 l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~  421 (533)
                      +....           .....+...|+++++.|+..|+++|..+....             .++.|...|.+ +++.|+.
T Consensus       802 ~g~~~-----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~-------------a~~~L~~~L~D-~~~~VR~  856 (897)
T PRK13800        802 LGCPP-----------DDVAAATAALRASAWQVRQGAARALAGAAADV-------------AVPALVEALTD-PHLDVRK  856 (897)
T ss_pred             cCCcc-----------hhHHHHHHHhcCCChHHHHHHHHHHHhccccc-------------hHHHHHHHhcC-CCHHHHH
Confidence            84311           12356778899999999999999999875432             56888888887 8999999


Q ss_pred             HHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHh
Q 009514          422 QGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN  478 (533)
Q Consensus       422 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~  478 (533)
                      .++++|+.+. +++                ...+.|...+++++..||..|..+|..
T Consensus       857 ~A~~aL~~~~-~~~----------------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        857 AAVLALTRWP-GDP----------------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHHHhccC-CCH----------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            9999999862 222                233677899999999999999998863

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.52  E-value=1.2e-12  Score=120.22  Aligned_cols=195  Identities=15%  Similarity=0.193  Sum_probs=159.0

Q ss_pred             cccccccchHHHHhhhc-CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCC
Q 009514           11 YDFLQEENMEFLLSLLN-NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNN   88 (533)
Q Consensus        11 ~~l~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~   88 (533)
                      +..++++.++.|+.+|+ +.++.+++.|..++.+.+..+.+|..+.+.|+++.+..+|.. ++.+|+.|+.+|.+++.+.
T Consensus         6 ~~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen    6 KNILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND   85 (254)
T ss_pred             cCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence            56789999999999999 468999999999999999999999999999999999999997 7899999999999998665


Q ss_pred             hhhhhhhccccCcccHHHHHHHHhc--CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHH
Q 009514           89 PEVVSQFVGPDTGRTLSCIIEIVKD--RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEAS  165 (533)
Q Consensus        89 ~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~  165 (533)
                      ++. ..+     ...++.+++.+.+  .+..+|.++.+.|.+++.....+  . .+ .+.+|.++++|.. +..++..+.
T Consensus        86 en~-~~I-----k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~-~l-~~~i~~ll~LL~~G~~~~k~~vL  155 (254)
T PF04826_consen   86 ENQ-EQI-----KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--H-ML-ANYIPDLLSLLSSGSEKTKVQVL  155 (254)
T ss_pred             hhH-HHH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--h-hH-HhhHHHHHHHHHcCChHHHHHHH
Confidence            443 333     2357777775554  37799999999999998765432  2 22 4589999999984 567899999


Q ss_pred             HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhc
Q 009514          166 FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS  217 (533)
Q Consensus       166 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~  217 (533)
                      ++|.+|+++ +...+.++..++++.++.++..+ .+.+....++..+.++..
T Consensus       156 k~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  156 KVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENINE  205 (254)
T ss_pred             HHHHHhccC-HHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHHH
Confidence            999999864 55566777889999999988776 356677788888888853

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.51  E-value=2e-11  Score=128.01  Aligned_cols=401  Identities=16%  Similarity=0.152  Sum_probs=265.4

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV   96 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~   96 (533)
                      .++.+.+=|+++++.++..|.+++++++ .++-    . .-..+.+.+++.+ ++-||.+|+.++.++...+|+....  
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~----~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~--  151 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIR-TPEM----A-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED--  151 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHH----H-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG--
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccch----h-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH--
Confidence            5677777888899999999999999998 3332    2 2256778888876 7899999999999998887776421  


Q ss_pred             cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCC
Q 009514           97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK  175 (533)
Q Consensus        97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~  175 (533)
                          . .++.+.++++++++.|+.+|+.++..+ +.++. ... ..-...++.|.+++.. +++.+......+..++...
T Consensus       152 ----~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~-~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~  223 (526)
T PF01602_consen  152 ----E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD-SYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME  223 (526)
T ss_dssp             ----G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH-HHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS
T ss_pred             ----H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc-hhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC
Confidence                2 478889999999999999999999988 32211 100 2233455566666564 4667888999999998777


Q ss_pred             HHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHH
Q 009514          176 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR  255 (533)
Q Consensus       176 ~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~  255 (533)
                      +.....   ...++.+..++.+.  .+.+...++.++..+....+      .-..+++.+.+++.++++.+|..++.+|.
T Consensus       224 ~~~~~~---~~~i~~l~~~l~s~--~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~  292 (526)
T PF01602_consen  224 PEDADK---NRIIEPLLNLLQSS--SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLS  292 (526)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             hhhhhH---HHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence            665411   24567777777754  36778888888888765432      33467899999999999999999999999


Q ss_pred             HHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh-cCCCHHHHH
Q 009514          256 SVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS-KSMDSTIRL  333 (533)
Q Consensus       256 ~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~  333 (533)
                      .++...+    . ...  .....+..+. +++..++..++..|.+++.  ..+..     .+++.|...+ ..++++++.
T Consensus       293 ~l~~~~~----~-~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~-----~Il~eL~~~l~~~~d~~~~~  358 (526)
T PF01602_consen  293 QLAQSNP----P-AVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVK-----EILDELLKYLSELSDPDFRR  358 (526)
T ss_dssp             HHCCHCH----H-HHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHH-----HHHHHHHHHHHHC--HHHHH
T ss_pred             Hhhcccc----h-hhh--hhhhhhheecCCCChhHHHHHHHHHhhccc--ccchh-----hHHHHHHHHHHhccchhhhh
Confidence            9987631    1 122  2223334444 8899999999999999984  23222     2567777777 445777888


Q ss_pred             HHHHHHHHhhccCChHhHH---HH---HH-------------------------hhcHHHHHhhhCC-CChhHHHHHHHH
Q 009514          334 NALRALRNLIFLAEDKCKE---EI---FM-------------------------ELTASLLASLICD-PEPSVQEQALAL  381 (533)
Q Consensus       334 ~al~aL~~l~~~~~~~~~~---~i---~~-------------------------~~~~~~l~~lL~~-~~~~v~~~a~~~  381 (533)
                      .++.+++.++...++....   .+   +.                         ...+..+.+.+.+ .+++++..++|+
T Consensus       359 ~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wi  438 (526)
T PF01602_consen  359 ELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWI  438 (526)
T ss_dssp             HHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence            8888888776432211110   00   00                         0124444554443 456677777777


Q ss_pred             HHHhhcCCcc--hHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCCh--hhHHHHHHHhhHhhhhhhHHHH
Q 009514          382 VRNLVDGRIN--SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE--SHKEAVMDQLLLRAENKAQSCI  457 (533)
Q Consensus       382 L~~l~~~~~~--~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l  457 (533)
                      ++..+...++  ....       +++.+...+.. .++.++...+.++..+....+  +..+.            +.+.+
T Consensus       439 lGEy~~~~~~~~~~~~-------~~~~l~~~~~~-~~~~vk~~ilt~~~Kl~~~~~~~~~~~~------------i~~~~  498 (526)
T PF01602_consen  439 LGEYGELIENTESAPD-------ILRSLIENFIE-ESPEVKLQILTALAKLFKRNPENEVQNE------------ILQFL  498 (526)
T ss_dssp             HHHHCHHHTTTTHHHH-------HHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHSCSTTHHHH------------HHHHH
T ss_pred             hcccCCcccccccHHH-------HHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhCCchhhHHH------------HHHHH
Confidence            7776644322  1111       44455554444 567899999998888876443  22222            33566


Q ss_pred             HHhhc--cCChhHHHHHHHHHHhh
Q 009514          458 IKFLQ--SNDSRLRTAAVWAVLNL  479 (533)
Q Consensus       458 v~~L~--~~~~~v~~~a~~~L~~l  479 (533)
                      ..+..  +.+.++|..|...+.=+
T Consensus       499 ~~~~~~~s~~~evr~Ra~~y~~ll  522 (526)
T PF01602_consen  499 LSLATEDSSDPEVRDRAREYLRLL  522 (526)
T ss_dssp             HCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHH
Confidence            67777  78999999998776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.49  E-value=2.4e-12  Score=118.22  Aligned_cols=227  Identities=18%  Similarity=0.176  Sum_probs=173.6

Q ss_pred             HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc
Q 009514          184 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN  263 (533)
Q Consensus       184 ~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~  263 (533)
                      +.+.+++|+.+|+.. .+|.+++.++.++++.+.+ +..++.+.+.|+++.+..+|.++++.+|..|.++|.|++.+.++
T Consensus        10 ~~~~l~~Ll~lL~~t-~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen   10 EAQELQKLLCLLEST-EDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             CHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            445678999988876 4788999999999998765 57888899999999999999999999999999999999887555


Q ss_pred             ccchhhhhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009514          264 LSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN  341 (533)
Q Consensus       264 ~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~  341 (533)
                      ...   + ..+++.+++...+  .+.++|.++..+|.|++..+ .....+  .+.++.+++++.+++..+|.+++++|.|
T Consensus        88 ~~~---I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~n  160 (254)
T PF04826_consen   88 QEQ---I-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVN  160 (254)
T ss_pred             HHH---H-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            432   2 2357777775432  37899999999999998643 333333  3579999999999999999999999999


Q ss_pred             hhccCChHhHHHHHHhhcHHHHHhhhCCC-ChhHHHHHHHHHHHhhcCCcch-------------HHHHHhhcCchHHHH
Q 009514          342 LIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGRINS-------------VEYIFAEDGIILDAV  407 (533)
Q Consensus       342 l~~~~~~~~~~~i~~~~~~~~l~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~~~~~~~~L  407 (533)
                      |+.  .|...+.++...+...++.++..+ +.++...++..+.|+..+-...             ...++.+.+.+-+.|
T Consensus       161 LS~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l  238 (254)
T PF04826_consen  161 LSE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKL  238 (254)
T ss_pred             hcc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHH
Confidence            976  466788888888999999999764 6788999999999997552211             112233322244445


Q ss_pred             HHHhccCCchhHHHH
Q 009514          408 GRQLRIASKAEIEIQ  422 (533)
Q Consensus       408 ~~~L~~~~~~~v~~~  422 (533)
                      ..+..+ ++++|++.
T Consensus       239 ~~l~~h-~d~ev~~~  252 (254)
T PF04826_consen  239 QALANH-PDPEVKEQ  252 (254)
T ss_pred             HHHHcC-CCHHHhhh
Confidence            444444 77777764

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.2e-11  Score=122.99  Aligned_cols=394  Identities=12%  Similarity=0.044  Sum_probs=267.0

Q ss_pred             cHHHHHHHHhcC-ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHHH
Q 009514          103 TLSCIIEIVKDR-FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ  179 (533)
Q Consensus       103 ~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~  179 (533)
                      .+..|+.-++.. ++..|..|+.-|+.+.....+.....+--...+|.|+.+|+.  +.+++..|+++|++|....+..-
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            455666666554 888899998888887665543334445556799999999993  56899999999999998888777


Q ss_pred             HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514          180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  259 (533)
Q Consensus       180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~  259 (533)
                      ..++++++||.|+.-|..- ..-++.|+++.+|-.++...+   +.+.+.|++-..+.+|+.-+..+|..|.....|++.
T Consensus       248 a~vV~~~aIPvl~~kL~~I-eyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTI-EYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999877654 246788999999999987544   467889999999999998899999999999999987


Q ss_pred             ccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch---hHHHHHHhCcHHHHHHhhcCCC----HHHH
Q 009514          260 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT---RRSTFIRLGGVKLLVQLSKSMD----STIR  332 (533)
Q Consensus       260 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~~~~~~~~~i~~L~~ll~~~~----~~~~  332 (533)
                      +...-...  .-...+|.|..+|...|....+.++-++..++..+..   ..+.+...|.|....+++.-..    ..+.
T Consensus       324 si~sd~f~--~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~  401 (1051)
T KOG0168|consen  324 SIRSDEFH--FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY  401 (1051)
T ss_pred             cCCCccch--HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence            63222212  2245789999999999999999999999999876543   3455667788888888876542    3345


Q ss_pred             HHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCC--------------hhHHHHHHH------------------
Q 009514          333 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE--------------PSVQEQALA------------------  380 (533)
Q Consensus       333 ~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~--------------~~v~~~a~~------------------  380 (533)
                      ...++.|..++.+. |.......+.+....+..+|...+              +.-+-....                  
T Consensus       402 ~~vIrmls~msS~~-pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~  480 (1051)
T KOG0168|consen  402 TGVIRMLSLMSSGS-PLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVD  480 (1051)
T ss_pred             hHHHHHHHHHccCC-hHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehh
Confidence            55666777776543 444544445444444444443110              000000000                  


Q ss_pred             ------------------------------HHHHhhc----C-----------CcchHHHHHhhc--------CchHHHH
Q 009514          381 ------------------------------LVRNLVD----G-----------RINSVEYIFAED--------GIILDAV  407 (533)
Q Consensus       381 ------------------------------~L~~l~~----~-----------~~~~~~~i~~~~--------~~~~~~L  407 (533)
                                                    +...+.+    +           +.+....++.+.        ..+++.|
T Consensus       481 ~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVL  560 (1051)
T KOG0168|consen  481 CSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVL  560 (1051)
T ss_pred             hhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHH
Confidence                                          0001111    0           000111122211        1167888


Q ss_pred             HHHhccCCchhHHHHHHHHHHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCC
Q 009514          408 GRQLRIASKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPG  486 (533)
Q Consensus       408 ~~~L~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~  486 (533)
                      ++...++.++.|+..|+.+|..+.+ .+.+....++.      +.++-.++..+|.+.|..+...|....--|.. +-+.
T Consensus       561 veVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk------~~~vSS~lAG~lsskD~~vlVgALQvAEiLme-Klpd  633 (1051)
T KOG0168|consen  561 VEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLK------NTNVSSHLAGMLSSKDLTVLVGALQVAEILME-KLPD  633 (1051)
T ss_pred             HHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHh------cchHHHHHHhhhhcCCCeeEeehHHHHHHHHH-HhHH
Confidence            8888888899999999999999887 33445555554      37777888999998887766555544433332 0001


Q ss_pred             cHHHHHHHHHCCcHHHHHhhhcCCCC
Q 009514          487 SSGRLVKLHDAGIVSHVKNMVNDPCL  512 (533)
Q Consensus       487 ~~~~~~~l~~~g~~~~L~~ll~~~~~  512 (533)
                        -....++..|++.++.+|..+.++
T Consensus       634 --~F~~~F~REGV~~~v~~L~~~~~~  657 (1051)
T KOG0168|consen  634 --TFSPSFRREGVFHAVKQLSVDSNP  657 (1051)
T ss_pred             --HhhhhHhhhhHHHHHHHHhccCCc
Confidence              124578899999999999874433

>PTZ00429 beta-adaptin; Provisional

Probab=99.49  E-value=1.5e-09  Score=114.45  Aligned_cols=433  Identities=12%  Similarity=0.152  Sum_probs=275.5

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      -+++.+.+=++++++.+|-.|.++++++.. ++    +. .-.++++.+.+.. ++-||..|+.|+.++...+|+...  
T Consensus       105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~----i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~--  176 (746)
T PTZ00429        105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-SS----VL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY--  176 (746)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HH----HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc--
Confidence            356778888888899999999998888763 22    11 1244566666665 788999999999999877775531  


Q ss_pred             ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcC
Q 009514           96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAE  174 (533)
Q Consensus        96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~  174 (533)
                          ..+.++.+.+++.+.++.|..+|+.+|..+....+..   .....+.+..|+..+.+ +++.+.....+|....-.
T Consensus       177 ----~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~---l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~  249 (746)
T PTZ00429        177 ----QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK---IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS  249 (746)
T ss_pred             ----ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh---hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Confidence                2456788888999999999999999999997755431   12334556666666664 456677777777654322


Q ss_pred             CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccc-hhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHH
Q 009514          175 KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC  253 (533)
Q Consensus       175 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~  253 (533)
                      +..-.     ...+..+...|...+  +.+...|++++.++.... +....... ...-++++.+ .+.++++|..+...
T Consensus       250 ~~~e~-----~~il~~l~~~Lq~~N--~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~  320 (746)
T PTZ00429        250 DKESA-----ETLLTRVLPRMSHQN--PAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKN  320 (746)
T ss_pred             CcHHH-----HHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHH
Confidence            22111     123455666666653  678888899888887532 22211111 1123555655 45678999999988


Q ss_pred             HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514          254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL  333 (533)
Q Consensus       254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  333 (533)
                      |..+....+.     +... .+..+.-...+ ...++...+..|..++..  .+...     ++..|.+++.+.+.+++.
T Consensus       321 I~~i~~~~P~-----lf~~-~~~~Ff~~~~D-p~yIK~~KLeIL~~Lane--~Nv~~-----IL~EL~eYa~d~D~ef~r  386 (746)
T PTZ00429        321 IHALLVIFPN-----LLRT-NLDSFYVRYSD-PPFVKLEKLRLLLKLVTP--SVAPE-----ILKELAEYASGVDMVFVV  386 (746)
T ss_pred             HHHHHHHCHH-----HHHH-HHHhhhcccCC-cHHHHHHHHHHHHHHcCc--ccHHH-----HHHHHHHHhhcCCHHHHH
Confidence            8777654322     2222 23333333344 446899999999999853  33322     456777888888999999


Q ss_pred             HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh--
Q 009514          334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL--  411 (533)
Q Consensus       334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L--  411 (533)
                      .++.++++++...+.      .....++.|++++++... +...++..+.++....|+..         ++..+...+  
T Consensus       387 ~aIrAIg~lA~k~~~------~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---------il~~L~~~~~~  450 (746)
T PTZ00429        387 EVVRAIASLAIKVDS------VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---------MLDTLVTDYGA  450 (746)
T ss_pred             HHHHHHHHHHHhChH------HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---------HHHHHHHhhcc
Confidence            999999999864321      223456778888876544 45578888999987766421         233333322  


Q ss_pred             ccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHH
Q 009514          412 RIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRL  491 (533)
Q Consensus       412 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  491 (533)
                      ..-.+++.+...+|+|+.++..-++ .            ..++..+++-+...+..||.+...+...+....    ++..
T Consensus       451 ~~i~e~~AKaaiiWILGEy~~~I~~-a------------~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~----p~~~  513 (746)
T PTZ00429        451 DEVVEEEAKVSLLWMLGEYCDFIEN-G------------KDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRD----PQGM  513 (746)
T ss_pred             cccccHHHHHHHHHHHHhhHhhHhh-H------------HHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcC----cHHH
Confidence            2225688999999999998642211 1            123334444445567789999888888777521    1111


Q ss_pred             HHHHHCCcHHHHH-hhh-cCCCCcHHHHHHHHHHHH
Q 009514          492 VKLHDAGIVSHVK-NMV-NDPCLDVKLRVKTALEQF  525 (533)
Q Consensus       492 ~~l~~~g~~~~L~-~ll-~~~~~~v~~~a~~aL~~~  525 (533)
                      +.     .+..+. ... .+.++|+|.||.....-+
T Consensus       514 ~~-----~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL  544 (746)
T PTZ00429        514 EP-----QLNRVLETVTTHSDDPDVRDRAFAYWRLL  544 (746)
T ss_pred             HH-----HHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence            11     123333 333 357889999987655443

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=3.4e-10  Score=113.58  Aligned_cols=432  Identities=16%  Similarity=0.113  Sum_probs=258.7

Q ss_pred             hHHHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhc--CChhhHHHHHHHHHHhhhcCCCcc
Q 009514           60 LKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD--RFARTRLLASLCLIVIRNASPCYL  137 (533)
Q Consensus        60 i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~  137 (533)
                      ++.|...+..+..++..|=.-|.+.+..|=           ...+..+.+.+.+  .+...|..|.-.|.|-...++.+.
T Consensus         4 ~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf-----------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~   72 (859)
T KOG1241|consen    4 LELLEKTLSPDQNVRKRAEKQLEQAQSQNF-----------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPER   72 (859)
T ss_pred             HHHHHHHcCCCcchHHHHHHHHHHHHhccH-----------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHH
Confidence            344444444455556666555555443321           1233334443322  233457777766666554442211


Q ss_pred             h----------hhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhh----cCCCCc
Q 009514          138 Q----------DVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQ----KGSLHP  202 (533)
Q Consensus       138 ~----------~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~----~~~~~~  202 (533)
                      +          +.-.++.+-..+.+.|+. .+.....|+++++.++...-..       +..|-|+..|.    +.. ..
T Consensus        73 k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~-------n~wp~li~~lv~nv~~~~-~~  144 (859)
T KOG1241|consen   73 KQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQ-------NQWPELIVTLVSNVGEEQ-AS  144 (859)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCch-------hhCHHHHHHHHHhccccc-ch
Confidence            1          111122333344566663 3566677888888887543221       23344444343    332 23


Q ss_pred             hhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC--CCCHHHHHHHHHHHHHHh-hccccccchhhhhcCcHHHHH
Q 009514          203 RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVS-RSIKNLSAGSFMNETIVIPLV  279 (533)
Q Consensus       203 ~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~--~~~~~v~~~a~~~L~~ls-~~~~~~~~~~~~~~~~i~~Lv  279 (533)
                      .+++..+.+++.+|.+-..-...-....++..++..+.  .++..||.+|..+|.+-- ....+.... .-..=+++..+
T Consensus       145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-~ern~iMqvvc  223 (859)
T KOG1241|consen  145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-MERNYIMQVVC  223 (859)
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-hhhceeeeeee
Confidence            58899999999999743211111112356777777765  457899999999998642 221233333 22233456667


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccC-------------
Q 009514          280 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA-------------  346 (533)
Q Consensus       280 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~-------------  346 (533)
                      +.-+++|.+++.+|..+|..+..-+...-+..++......-+.-++++++++...++..=+++|...             
T Consensus       224 Eatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~  303 (859)
T KOG1241|consen  224 EATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ  303 (859)
T ss_pred             ecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            7778899999999999999998766665555555566667778889999999999998888887521             


Q ss_pred             --ChHhHHHHHH--hhcHHHHHhhhCC-------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCC
Q 009514          347 --EDKCKEEIFM--ELTASLLASLICD-------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS  415 (533)
Q Consensus       347 --~~~~~~~i~~--~~~~~~l~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~  415 (533)
                        +|.++.....  ...+|.|+++|..       +++..-..|-.+|.-++....+   .+++ .  +++.+-..+++ +
T Consensus       304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~-~--Vl~Fiee~i~~-p  376 (859)
T KOG1241|consen  304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVP-H--VLPFIEENIQN-P  376 (859)
T ss_pred             CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchh-h--hHHHHHHhcCC-c
Confidence              1101100000  1356778887742       2344444444334333322111   1222 1  55556556666 8


Q ss_pred             chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHH
Q 009514          416 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH  495 (533)
Q Consensus       416 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~  495 (533)
                      +..-++.+..+++.+..|.+..+..-+.       .+++|.++.++.++.-.++..++|+++.++..   -.........
T Consensus       377 dwr~reaavmAFGSIl~gp~~~~Lt~iV-------~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~---l~e~~~n~~~  446 (859)
T KOG1241|consen  377 DWRNREAAVMAFGSILEGPEPDKLTPIV-------IQALPSIINLMSDPSLWVKDTAAWTLGRIADF---LPEAIINQEL  446 (859)
T ss_pred             chhhhhHHHHHHHhhhcCCchhhhhHHH-------hhhhHHHHHHhcCchhhhcchHHHHHHHHHhh---chhhcccHhh
Confidence            8889999999999999876644443333       57889999999988888999999999999942   1111112223


Q ss_pred             HCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          496 DAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       496 ~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      ..+.++.+.+=+.| .|.+-.++.||+.++.+-.
T Consensus       447 l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~  479 (859)
T KOG1241|consen  447 LQSKLSALLEGLND-EPRVASNVCWAFISLAEAA  479 (859)
T ss_pred             hhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHH
Confidence            34556666666654 7888899999999998643

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.45  E-value=4.5e-10  Score=109.03  Aligned_cols=470  Identities=15%  Similarity=0.119  Sum_probs=269.6

Q ss_pred             cchHHHHhhhcCCC-cchhHHHHHHHHHhhcCchhHHHHHhcCc--hHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhh
Q 009514           17 ENMEFLLSLLNNES-ENVSGLGASIISHSCKTSLEQKLLFDAGV--LKRLTSLLGG--SLIQRDASLESIATIFKNNPEV   91 (533)
Q Consensus        17 ~~i~~L~~lL~~~~-~~v~~~a~~~l~~~~~~~~~~~~i~~~g~--i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~   91 (533)
                      +-+..++.....+. ...+..+..+++..|....-+..+...+.  +.....-++.  +..+|..++.||..-+..   +
T Consensus       133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v  209 (858)
T COG5215         133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---V  209 (858)
T ss_pred             HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---H
Confidence            44555566666554 45566788888888865443333333322  2233333443  458999999999873321   1


Q ss_pred             hhhhccccCccc-HHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHH
Q 009514           92 VSQFVGPDTGRT-LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFS  169 (533)
Q Consensus        92 ~~~~~~~~~~~~-i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~  169 (533)
                      +..+...+.... ...+.+..+.++.++|.+|-.||..+....-. ......+.-......+.+++ ++.+...+.+.-+
T Consensus       210 ~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~-fm~~ymE~aL~alt~~~mks~nd~va~qavEfWs  288 (858)
T COG5215         210 QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK-FMQSYMENALAALTGRFMKSQNDEVAIQAVEFWS  288 (858)
T ss_pred             HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence            122211112223 33456678899999999999999988765321 11112222223333444543 3444444443332


Q ss_pred             hhhcCCHHH------------HHH----HHHcCcHHHHHHhhhcCCCC--------------------------------
Q 009514          170 SLIAEKEDM------------QKL----AFEVNGVDKLYNHLQKGSLH--------------------------------  201 (533)
Q Consensus       170 ~l~~~~~~~------------~~~----~~~~~~l~~L~~~L~~~~~~--------------------------------  201 (533)
                      .+.+..-+.            +..    ..-.+.+|.|+++|.+..++                                
T Consensus       289 ticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl  368 (858)
T COG5215         289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVL  368 (858)
T ss_pred             HHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHH
Confidence            222111100            000    01123578888888764321                                


Q ss_pred             -----------chhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhh
Q 009514          202 -----------PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFM  270 (533)
Q Consensus       202 -----------~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~  270 (533)
                                 +..|+.++.+++.+.....+....-.-.+.+|.+...+.++.--++..++||++.++.+....    +-
T Consensus       369 ~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~----i~  444 (858)
T COG5215         369 GFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI----IS  444 (858)
T ss_pred             HHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh----cC
Confidence                       235788888888887654333333334578899999999888899999999999998764431    22


Q ss_pred             hcCcHHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCchhH---HHHHH---hCcHHHHHHhh--cCCCHHHHHHHHHHH
Q 009514          271 NETIVIPLVRLLD---DTSTAVQVAALGAISNIVVDFTTRR---STFIR---LGGVKLLVQLS--KSMDSTIRLNALRAL  339 (533)
Q Consensus       271 ~~~~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~---~~~~~---~~~i~~L~~ll--~~~~~~~~~~al~aL  339 (533)
                      -.+.++..++-+.   .++|.+...++|+.-|++.+..+..   +.++.   ..++..|++-.  ...+...|..+..+|
T Consensus       445 p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaL  524 (858)
T COG5215         445 PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSAL  524 (858)
T ss_pred             ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence            2344444443221   3578889999999999987654432   11111   12334444322  234456788888899


Q ss_pred             HHhhccCChHhHHHHH-------Hh--hcHHHHHhhhCCC----ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHH
Q 009514          340 RNLIFLAEDKCKEEIF-------ME--LTASLLASLICDP----EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA  406 (533)
Q Consensus       340 ~~l~~~~~~~~~~~i~-------~~--~~~~~l~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~  406 (533)
                      +.+....+....+.+.       +.  ..+..+-+.+...    -.++|.+-++.|..+....+..++.+-   ++++++
T Consensus       525 gtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~---D~lm~L  601 (858)
T COG5215         525 GTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE---DQLMEL  601 (858)
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH---HHHHHH
Confidence            8887644322222111       00  0122222223222    246777777777777655443332221   237888


Q ss_pred             HHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCC
Q 009514          407 VGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPG  486 (533)
Q Consensus       407 L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~  486 (533)
                      +.++|++.....+......+|++++.+-++..+...        ..++|.+.+-|+..|..+...|++.++.++..  -+
T Consensus       602 f~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~--------~~fiPyl~~aln~~d~~v~~~avglvgdlant--l~  671 (858)
T COG5215         602 FIRILESTKPTTAFGDVYTAISALSTSLEERFEQYA--------SKFIPYLTRALNCTDRFVLNSAVGLVGDLANT--LG  671 (858)
T ss_pred             HHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH--------hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH--hh
Confidence            889998833445677788899999886555555554        47889999999889999999999999999941  11


Q ss_pred             cHHHHHHHHHCCcHHHHHhhhcCC
Q 009514          487 SSGRLVKLHDAGIVSHVKNMVNDP  510 (533)
Q Consensus       487 ~~~~~~~l~~~g~~~~L~~ll~~~  510 (533)
                      +  ...... .-....|++.+.++
T Consensus       672 ~--df~~y~-d~~ms~LvQ~lss~  692 (858)
T COG5215         672 T--DFNIYA-DVLMSSLVQCLSSE  692 (858)
T ss_pred             h--hHHHHH-HHHHHHHHHHhcCh
Confidence            1  112222 22346777877644

>PTZ00429 beta-adaptin; Provisional

Probab=99.43  E-value=3e-09  Score=112.11  Aligned_cols=349  Identities=15%  Similarity=0.119  Sum_probs=225.4

Q ss_pred             ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHH
Q 009514           70 SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN  149 (533)
Q Consensus        70 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~  149 (533)
                      ++.+|..|+++++.+-.  ++...        -.+..+.+.+.+.++.||..|+.|+.++++..++    .+...+.++.
T Consensus       118 Np~IRaLALRtLs~Ir~--~~i~e--------~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe----lv~~~~~~~~  183 (746)
T PTZ00429        118 SPVVRALAVRTMMCIRV--SSVLE--------YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ----LFYQQDFKKD  183 (746)
T ss_pred             CHHHHHHHHHHHHcCCc--HHHHH--------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc----cccccchHHH
Confidence            45566666666665422  22221        2355567788999999999999999999987653    2335678999


Q ss_pred             HHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh
Q 009514          150 LLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS  228 (533)
Q Consensus       150 L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~  228 (533)
                      |.+++.| ++.+...|..+|..+...++..  .-...+.+..|+..|.+.+ +| .+...+..|...   .+.....  .
T Consensus       184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~-EW-~Qi~IL~lL~~y---~P~~~~e--~  254 (746)
T PTZ00429        184 LVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECN-EW-GQLYILELLAAQ---RPSDKES--A  254 (746)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCC-hH-HHHHHHHHHHhc---CCCCcHH--H
Confidence            9999985 5678899999999887654431  2223444666777666543 34 345566665442   2211111  1


Q ss_pred             hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc-cccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 009514          229 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK-NLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR  307 (533)
Q Consensus       229 ~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~  307 (533)
                      ...+..+...|++.|+.|...|++++.+++...+ .....  .-....++|+.++ +++++++..++..|.-++...+  
T Consensus       255 ~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~--~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P--  329 (746)
T PTZ00429        255 ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIER--CTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFP--  329 (746)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHH--HHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCH--
Confidence            3578888889999999999999999999875421 11111  1122346677774 5678999999999987776443  


Q ss_pred             HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514          308 RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  387 (533)
Q Consensus       308 ~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~  387 (533)
                        .+++.. +..+.....+ ...+|...+..|..++...+   -..++     .-|.+...+.+.+++..++.+++.++.
T Consensus       330 --~lf~~~-~~~Ff~~~~D-p~yIK~~KLeIL~~Lane~N---v~~IL-----~EL~eYa~d~D~ef~r~aIrAIg~lA~  397 (746)
T PTZ00429        330 --NLLRTN-LDSFYVRYSD-PPFVKLEKLRLLLKLVTPSV---APEIL-----KELAEYASGVDMVFVVEVVRAIASLAI  397 (746)
T ss_pred             --HHHHHH-HHhhhcccCC-cHHHHHHHHHHHHHHcCccc---HHHHH-----HHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence              333322 4444333343 34689999999999976332   23333     445566678899999999999999997


Q ss_pred             CCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh---ccC
Q 009514          388 GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL---QSN  464 (533)
Q Consensus       388 ~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L---~~~  464 (533)
                      .-+.....       +++.|..++.. . .++..+++.++.++....++.  .+            ++.++..+   .-.
T Consensus       398 k~~~~a~~-------cV~~Ll~ll~~-~-~~~v~e~i~vik~IlrkyP~~--~i------------l~~L~~~~~~~~i~  454 (746)
T PTZ00429        398 KVDSVAPD-------CANLLLQIVDR-R-PELLPQVVTAAKDIVRKYPEL--LM------------LDTLVTDYGADEVV  454 (746)
T ss_pred             hChHHHHH-------HHHHHHHHhcC-C-chhHHHHHHHHHHHHHHCccH--HH------------HHHHHHhhcccccc
Confidence            65433322       56677777765 3 234556777777776544421  12            23444433   225


Q ss_pred             ChhHHHHHHHHHHhhcC
Q 009514          465 DSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       465 ~~~v~~~a~~~L~~l~~  481 (533)
                      +++.|...+|.|+.++.
T Consensus       455 e~~AKaaiiWILGEy~~  471 (746)
T PTZ00429        455 EEEAKVSLLWMLGEYCD  471 (746)
T ss_pred             cHHHHHHHHHHHHhhHh
Confidence            67899999999999984

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.42  E-value=2.7e-12  Score=105.84  Aligned_cols=118  Identities=26%  Similarity=0.288  Sum_probs=106.5

Q ss_pred             hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 009514          225 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF  304 (533)
Q Consensus       225 ~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~  304 (533)
                      .+++.|+++.++++++++++.++..++++|.+++...+..... +.+.|+++.+++++.+++++++..++++|+|++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQA-VVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHH-HHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            3567899999999999999999999999999999874444444 677899999999999999999999999999999887


Q ss_pred             chhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514          305 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  343 (533)
Q Consensus       305 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~  343 (533)
                      +.....+.+.|+++.+++++...+..++..++++|.+++
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            777778888999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.38  E-value=1.3e-11  Score=101.73  Aligned_cols=118  Identities=28%  Similarity=0.282  Sum_probs=107.9

Q ss_pred             hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh
Q 009514          269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED  348 (533)
Q Consensus       269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~  348 (533)
                      +.+.|+++.|++++.+++++++..++++|++++...+.....+.+.|+++.++.++.++++.++..++++|+|++.+ ++
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-PE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC-cH
Confidence            56789999999999999999999999999999988778888888899999999999999999999999999999875 34


Q ss_pred             HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514          349 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  387 (533)
Q Consensus       349 ~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~  387 (533)
                      ..+..+.+.+.++.+++++.+.+.++++.++++|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            567778888999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=9.3e-09  Score=98.19  Aligned_cols=389  Identities=12%  Similarity=0.090  Sum_probs=263.5

Q ss_pred             cchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHh--cCChhhhhhhccccCcccHHHH
Q 009514           31 ENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIF--KNNPEVVSQFVGPDTGRTLSCI  107 (533)
Q Consensus        31 ~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~--~~~~~~~~~~~~~~~~~~i~~l  107 (533)
                      +..-..|...|.+++.+......+++...+..|++.|.. +.++......-|-.++  .+|...-      ...+.+..+
T Consensus       277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M------~~~~iveKL  350 (791)
T KOG1222|consen  277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVM------EQNGIVEKL  350 (791)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHH------HhccHHHHH
Confidence            344456788889999877777788999999999999985 5555555555555553  2333321      236789999


Q ss_pred             HHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCc
Q 009514          108 IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNG  187 (533)
Q Consensus       108 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (533)
                      ++++...+++.+....+.+.|++.+...  +..++..|.+|.|..+++++.. +.-|...+-.++.++.. +..+...++
T Consensus       351 ~klfp~~h~dL~~~tl~LlfNlSFD~gl--r~KMv~~GllP~l~~ll~~d~~-~~iA~~~lYh~S~dD~~-K~MfayTdc  426 (791)
T KOG1222|consen  351 LKLFPIQHPDLRKATLMLLFNLSFDSGL--RPKMVNGGLLPHLASLLDSDTK-HGIALNMLYHLSCDDDA-KAMFAYTDC  426 (791)
T ss_pred             HHhcCCCCHHHHHHHHHHhhhccccccc--cHHHhhccchHHHHHHhCCccc-chhhhhhhhhhccCcHH-HHHHHHHHH
Confidence            9999999999999999999999987754  5568899999999999985432 23456677777766543 334445678


Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHh-cCCCCHHHHHHHHHHHHHHhhccccccc
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LAHDSSDVRSAACMCLRSVSRSIKNLSA  266 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~-L~~~~~~v~~~a~~~L~~ls~~~~~~~~  266 (533)
                      ++.+++.+-.+. ..++-...+...-++|.+. .+.+.+.+-+++..+++. ++..++.+    .+.+++++.+.+....
T Consensus       427 i~~lmk~v~~~~-~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn  500 (791)
T KOG1222|consen  427 IKLLMKDVLSGT-GSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQN  500 (791)
T ss_pred             HHHHHHHHHhcC-CceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHH
Confidence            888888665553 2333333333334676543 333445566688887774 55566544    5678999887443332


Q ss_pred             hhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 009514          267 GSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALRNLI  343 (533)
Q Consensus       267 ~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~al~aL~~l~  343 (533)
                      . |+  ..+..|...+. +.+.+...+|.++++|+....-+..+.+.+.+.+|.+-..++..  ..++....+-+++.++
T Consensus       501 ~-Fi--dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a  577 (791)
T KOG1222|consen  501 M-FI--DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA  577 (791)
T ss_pred             H-HH--HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh
Confidence            2 33  45677777776 56777889999999999876566666666778889888777653  3456666666777776


Q ss_pred             ccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHH
Q 009514          344 FLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI  421 (533)
Q Consensus       344 ~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~  421 (533)
                      ..  ..+..-+-..+.++.++++|+  ..|.+...+.+..+..+... ......++++.. .-..++.++.+ .+.++++
T Consensus       578 ~d--~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~-~~AylIDLMHD-kN~eiRk  652 (791)
T KOG1222|consen  578 RD--LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETA-LGAYLIDLMHD-KNAEIRK  652 (791)
T ss_pred             hh--hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhcc-chHHHHHHHhc-ccHHHHH
Confidence            53  335555566788999999996  34666777777666666554 223344454431 23456566665 8889999


Q ss_pred             HHHHHHHHhccCChhhHHHHHH
Q 009514          422 QGMYVLGNVATGKESHKEAVMD  443 (533)
Q Consensus       422 ~a~~~L~~l~~~~~~~~~~~~~  443 (533)
                      -|=.+|--++..+++..+.+-.
T Consensus       653 VCDn~LdIiae~d~EWAKrI~~  674 (791)
T KOG1222|consen  653 VCDNALDIIAEHDKEWAKRIAG  674 (791)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhh
Confidence            8888888788766655555543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.26  E-value=5e-09  Score=102.65  Aligned_cols=323  Identities=15%  Similarity=0.126  Sum_probs=210.8

Q ss_pred             hhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHHHHHHHHc-----CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhc
Q 009514          145 KLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEV-----NGVDKLYNHLQKGSLHPRRFEGILLALADMCS  217 (533)
Q Consensus       145 ~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~  217 (533)
                      .....++.+++.  .+++.......+..|..+++...+.+.+.     +...+++.+|..+  +.-+...+...++.+..
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~--d~~i~~~a~~iLt~l~~  130 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ--DQFIVHMSFSILAKLAC  130 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC--chhHHHHHHHHHHHHHh
Confidence            445556666652  33445555666666666666555555543     3456777877654  46688888888888875


Q ss_pred             cchhhhHhhhhhchHHHHHHhcCCC-CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC--CCHHHHHHHH
Q 009514          218 KLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAAL  294 (533)
Q Consensus       218 ~~~~~~~~~~~~~~l~~l~~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~  294 (533)
                      ............-.++.+.+.++.+ +.+.+..++.+|..+.+. +..|.. +...++++.|+.+|+.  .+..+++.++
T Consensus       131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~-f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l  208 (429)
T cd00256         131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFA-FVLADGVPTLVKLLSNATLGFQLQYQSI  208 (429)
T ss_pred             cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHH-HHHccCHHHHHHHHhhccccHHHHHHHH
Confidence            4332111111111344555666544 467778888999999887 556665 7788899999999974  3678999999


Q ss_pred             HHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCC-----hHhHHHHHHhhcHHHHHhhhC
Q 009514          295 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAE-----DKCKEEIFMELTASLLASLIC  368 (533)
Q Consensus       295 ~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~-----~~~~~~i~~~~~~~~l~~lL~  368 (533)
                      -++.-++... +......+.+.++.++++++.. .+++.+-++.++.|+.....     ......+++.+.. .+++.|.
T Consensus       209 l~lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~-~~l~~L~  286 (429)
T cd00256         209 FCIWLLTFNP-HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL-KTLQSLE  286 (429)
T ss_pred             HHHHHHhccH-HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-HHHHHHh
Confidence            9999998654 3555566679999999999864 57788889999999986331     1233445555544 4444443


Q ss_pred             C---CChhHHHHHH---------------------HHHHHhhcCCcchH-HHHHhh--------cCchHHHHHHHhccCC
Q 009514          369 D---PEPSVQEQAL---------------------ALVRNLVDGRINSV-EYIFAE--------DGIILDAVGRQLRIAS  415 (533)
Q Consensus       369 ~---~~~~v~~~a~---------------------~~L~~l~~~~~~~~-~~i~~~--------~~~~~~~L~~~L~~~~  415 (533)
                      .   +|+++.+..-                     ...+.....+|-+. +.++.+        +..++..|..+|..+.
T Consensus       287 ~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~  366 (429)
T cd00256         287 QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV  366 (429)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence            2   3443332211                     11111111122221 222222        2237788999997667


Q ss_pred             chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          416 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       416 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      ++.+..-||+-|+.++...|..+. +++      +-|+-..+++++.++|++||.+|..|+..+-
T Consensus       367 d~~~laVAc~Dige~vr~~P~gr~-i~~------~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         367 DPIILAVACHDIGEYVRHYPRGKD-VVE------QLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             CcceeehhhhhHHHHHHHCccHHH-HHH------HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            888999999999999987765444 555      2678889999999999999999999998775

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=5.8e-08  Score=92.93  Aligned_cols=390  Identities=12%  Similarity=0.088  Sum_probs=268.8

Q ss_pred             hHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHH
Q 009514           71 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL  150 (533)
Q Consensus        71 ~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L  150 (533)
                      ..+...|+.-|.+++++..-- ....   ....+.-+++.+...+...-.....+|..++-...  ++..+.+.|.+..|
T Consensus       277 eqLLrva~ylLlNlAed~~~E-lKMr---rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~e--NK~~M~~~~iveKL  350 (791)
T KOG1222|consen  277 EQLLRVAVYLLLNLAEDISVE-LKMR---RKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDE--NKIVMEQNGIVEKL  350 (791)
T ss_pred             HHHHHHHHHHHHHHhhhhhHH-HHHH---HHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhcc--chHHHHhccHHHHH
Confidence            345566778888888654221 1221   13466778888888888888888999999887654  46667889999999


Q ss_pred             HHhcC-CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh
Q 009514          151 LELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL  229 (533)
Q Consensus       151 ~~ll~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~  229 (533)
                      ++++. ..++++......+.|++.+.. .+..++..|.+|.+..+|.+...    ..-|+..+..++.++ ..+..+...
T Consensus       351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~----~~iA~~~lYh~S~dD-~~K~MfayT  424 (791)
T KOG1222|consen  351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK----HGIALNMLYHLSCDD-DAKAMFAYT  424 (791)
T ss_pred             HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc----chhhhhhhhhhccCc-HHHHHHHHH
Confidence            99998 567888888899999987664 45678899999999998876631    245677788887654 666777788


Q ss_pred             chHHHHHHhcC-CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchh
Q 009514          230 QVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTR  307 (533)
Q Consensus       230 ~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~  307 (533)
                      ..++.+.+.+- ..+.+|-......-.|++.+..+.. . +.+..++..|++. ++..|+-+    ...++|++.+.+..
T Consensus       425 dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQ-l-vceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~t  498 (791)
T KOG1222|consen  425 DCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQ-L-VCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGAT  498 (791)
T ss_pred             HHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccce-E-EecCcchHHHHHHHhcccchHH----HHHHHHhhhccchH
Confidence            89999888654 3455555544444457776533322 1 3556678888774 34555533    34677888766655


Q ss_pred             HHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC--CChhHHHHHHHHHHH
Q 009514          308 RSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD--PEPSVQEQALALVRN  384 (533)
Q Consensus       308 ~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~--~~~~v~~~a~~~L~~  384 (533)
                      +..++  +.+.-|...++.. ++.....++.+|+|+... +-+....+.+...+|.+-..|..  ...+++.+.+-+++.
T Consensus       499 qn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~-dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT  575 (791)
T KOG1222|consen  499 QNMFI--DYVGDLAGIAKNDNSESFGLECLGTLANLKVT-DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGT  575 (791)
T ss_pred             HHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHhhcccC-CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhh
Confidence            55555  4566777766654 466788889999998763 33456666677788888887753  234566666666777


Q ss_pred             hhcCCcchHHHHHhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc
Q 009514          385 LVDGRINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS  463 (533)
Q Consensus       385 l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~  463 (533)
                      ++...  ....++.-.+ +++.++.+|+.. .+++...+.+++..++... +..++.++.      +...-..++.++++
T Consensus       576 ~a~d~--~cA~Lla~a~-~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~mik------et~~~AylIDLMHD  645 (791)
T KOG1222|consen  576 MARDL--DCARLLAPAK-LIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIK------ETALGAYLIDLMHD  645 (791)
T ss_pred             hhhhh--HHHHHhCccc-cHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHh------hccchHHHHHHHhc
Confidence            66542  2333333333 778888888763 4678888888988888764 555666665      35555789999999


Q ss_pred             CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHH
Q 009514          464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH  495 (533)
Q Consensus       464 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~  495 (533)
                      .+.++|+-|-.+|--++.    ...++.+++.
T Consensus       646 kN~eiRkVCDn~LdIiae----~d~EWAKrI~  673 (791)
T KOG1222|consen  646 KNAEIRKVCDNALDIIAE----HDKEWAKRIA  673 (791)
T ss_pred             ccHHHHHHHHHHHHHHHH----hhHHHHHHHh
Confidence            999999998888887774    3445555543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.18  E-value=1.4e-07  Score=94.75  Aligned_cols=448  Identities=15%  Similarity=0.148  Sum_probs=260.3

Q ss_pred             cccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHH-----HHHHHHhcCCh
Q 009514           15 QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASL-----ESIATIFKNNP   89 (533)
Q Consensus        15 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al-----~aL~~l~~~~~   89 (533)
                      ...++-.+.+-.+++|+..+.-..+++..||.....-........+|.+..-.-+    |+.|+     ..+...+   -
T Consensus       634 Trevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~----rrmA~drr~ykqlv~tt---v  706 (1172)
T KOG0213|consen  634 TREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWG----RRMALDRRNYKQLVDTT---V  706 (1172)
T ss_pred             HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhh----hhhhccccchhhHHHHH---H
Confidence            3445677777888999999999999999999765543344444455554443322    11111     0000000   0


Q ss_pred             hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC---CchhhhHHH
Q 009514           90 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP---GRVGDEASF  166 (533)
Q Consensus        90 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~a~~  166 (533)
                      .++..+   .....+..++.-++++++.-|...+.....+...-+..-.+....+..+..++-.+++.   +.+......
T Consensus       707 ~ia~Kv---G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg  783 (1172)
T KOG0213|consen  707 EIAAKV---GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFG  783 (1172)
T ss_pred             HHHHHh---CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHH
Confidence            111111   12345666777788888888777777766655443222234455566666666666532   234444444


Q ss_pred             HHHhhhcC--CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhh--HhhhhhchHHHHHHhcCCC
Q 009514          167 AFSSLIAE--KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR--SRCLSLQVLKLVVDALAHD  242 (533)
Q Consensus       167 ~L~~l~~~--~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~--~~~~~~~~l~~l~~~L~~~  242 (533)
                      ++.+-...  .+....      .+..++..|.+.  ++.+|++|+..++.++.--..+.  +.+...|.  .|.++|...
T Consensus       784 ~V~~~lg~r~kpylpq------i~stiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgee  853 (1172)
T KOG0213|consen  784 TVVNALGGRVKPYLPQ------ICSTILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEE  853 (1172)
T ss_pred             HHHHHHhhccccchHH------HHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcc
Confidence            44432211  111111      122233445554  48899999999998875322221  12223333  467889999


Q ss_pred             CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh---HHHHHHhCcHHH
Q 009514          243 SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR---RSTFIRLGGVKL  319 (533)
Q Consensus       243 ~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~---~~~~~~~~~i~~  319 (533)
                      .+++.-...+++..+.....-.... -=..+++|.|..+|++.+.++++.+...++.++...++.   ++.+.   +.=.
T Consensus       854 ypEvLgsILgAikaI~nvigm~km~-pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---Icfe  929 (1172)
T KOG0213|consen  854 YPEVLGSILGAIKAIVNVIGMTKMT-PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFE  929 (1172)
T ss_pred             cHHHHHHHHHHHHHHHHhccccccC-CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHH
Confidence            9988877777777665443221111 123588999999999999999999999999999765542   33332   2334


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCCh-hHHHHHHHHHHHhhcCCcchHHHHHh
Q 009514          320 LVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP-SVQEQALALVRNLVDGRINSVEYIFA  398 (533)
Q Consensus       320 L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~i~~  398 (533)
                      |+++|++-+.++|.+|..+++.++..-+|           -++|..||+.=.. +-|...+.++.         +..+-+
T Consensus       930 LlelLkahkK~iRRaa~nTfG~IakaIGP-----------qdVLatLlnnLkvqeRq~RvcTtva---------IaIVaE  989 (1172)
T KOG0213|consen  930 LLELLKAHKKEIRRAAVNTFGYIAKAIGP-----------QDVLATLLNNLKVQERQNRVCTTVA---------IAIVAE  989 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHhcCH-----------HHHHHHHHhcchHHHHHhchhhhhh---------hhhhhh
Confidence            67788888899999999999998765554           2344444432111 11111221111         111111


Q ss_pred             hcCc--hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 009514          399 EDGI--ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV  476 (533)
Q Consensus       399 ~~~~--~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L  476 (533)
                      ..|.  +++.|..--.. ++..||...+.+++.+...--+.....+        +.+.|.|...|-+.|...|..|+.++
T Consensus       990 ~c~pFtVLPalmneYrt-Pe~nVQnGVLkalsf~FeyigemskdYi--------yav~PlleDAlmDrD~vhRqta~~~I 1060 (1172)
T KOG0213|consen  990 TCGPFTVLPALMNEYRT-PEANVQNGVLKALSFMFEYIGEMSKDYI--------YAVTPLLEDALMDRDLVHRQTAMNVI 1060 (1172)
T ss_pred             hcCchhhhHHHHhhccC-chhHHHHhHHHHHHHHHHHHHHHhhhHH--------HHhhHHHHHhhccccHHHHHHHHHHH
Confidence            1121  55555544444 6667888888888877652222222233        45678889999999999999999999


Q ss_pred             HhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc-------CCCCcHHHHHHHHHHHHh
Q 009514          477 LNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-------DPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       477 ~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-------~~~~~v~~~a~~aL~~~~  526 (533)
                      ..++-+ ..|          .|....++.||+       +++|-|..+...++..+.
T Consensus      1061 ~Hl~Lg-~~g----------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r 1106 (1172)
T KOG0213|consen 1061 KHLALG-VPG----------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLR 1106 (1172)
T ss_pred             HHHhcC-CCC----------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHH
Confidence            998863 222          234444444443       567777766666666654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.13  E-value=2.1e-07  Score=90.89  Aligned_cols=305  Identities=11%  Similarity=0.040  Sum_probs=187.5

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-----ChHHHHHHHHHHHHHhcCChhhh
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-----SLIQRDASLESIATIFKNNPEVV   92 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~v~~~al~aL~~l~~~~~~~~   92 (533)
                      +=...+.-|+++.+.....|+..++.++.     ..+....|...+..+..+     ...++..++.+++++|+..+.  
T Consensus        95 vK~~al~aL~s~epr~~~~Aaql~aaIA~-----~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--  167 (858)
T COG5215          95 VKGMALRALKSPEPRFCTMAAQLLAAIAR-----MELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--  167 (858)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHH-----hhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--
Confidence            33566778888999999999999988873     223444454444444442     347889999999999865432  


Q ss_pred             hhhccccCcccHHHHHH-HHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhc----C-CCCchhhhHH
Q 009514           93 SQFVGPDTGRTLSCIIE-IVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL----D-DPGRVGDEAS  165 (533)
Q Consensus        93 ~~~~~~~~~~~i~~l~~-ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll----~-~~~~~~~~a~  165 (533)
                      +.+... .+..+-.++. -.+ .++..+|.+|+++|.+-...    .+..+-.++-...+++.-    + ++.+++..+.
T Consensus       168 e~li~~-sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f----v~~nf~~E~erNy~mqvvceatq~~d~e~q~aaf  242 (858)
T COG5215         168 EDLIQM-SNVILFAIVMGALKNETTSAVRLAALKALMDSLMF----VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAF  242 (858)
T ss_pred             HHHHHH-hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH----HHHhhcchhhhchhheeeehhccCCcHHHHHHHH
Confidence            112211 2334444544 333 56778999999999983221    111121223333444443    3 3456888888


Q ss_pred             HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh----------------hh
Q 009514          166 FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL----------------SL  229 (533)
Q Consensus       166 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~----------------~~  229 (533)
                      ++|.++-.-.-...+...+........+.+++.  +.++.-.++..-+-+|...-+..-...                -.
T Consensus       243 gCl~kim~LyY~fm~~ymE~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~  320 (858)
T COG5215         243 GCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVA  320 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHH
Confidence            998877543222222222222122233444444  356666666655555542211111111                13


Q ss_pred             chHHHHHHhcCC-------CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh----cCCCHHHHHHHHHHHH
Q 009514          230 QVLKLVVDALAH-------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL----DDTSTAVQVAALGAIS  298 (533)
Q Consensus       230 ~~l~~l~~~L~~-------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL----~~~~~~v~~~a~~aL~  298 (533)
                      +++|.++++|..       ++|.+..+|..||.-++...++         .++.+.+...    +++++.=++.|+.|++
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---------~i~~pVl~FvEqni~~~~w~nreaavmAfG  391 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---------KIMRPVLGFVEQNIRSESWANREAAVMAFG  391 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---------HhHHHHHHHHHHhccCchhhhHHHHHHHhh
Confidence            488999999963       4678999999999888765322         3344444444    5788999999999999


Q ss_pred             HHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 009514          299 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL  345 (533)
Q Consensus       299 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~  345 (533)
                      .+..++......-+-..++|.+..++.++.-.++..+.|+++.++.+
T Consensus       392 Svm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         392 SVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             hhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence            99977654333333357888888888877788899999999988754

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.4e-08  Score=103.12  Aligned_cols=259  Identities=16%  Similarity=0.167  Sum_probs=192.5

Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHH-hhccchhhhHhhhhhchHHHHHHhcCCC-CHHHHHHHHHHHHHHhhcccccc
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALAD-MCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~-l~~~~~~~~~~~~~~~~l~~l~~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      +.+|+.-|.... ++..+..++.-|.. |...+++.-..+--..++|.|+.+|+++ +.+++..||+||.+|+...+...
T Consensus       169 ~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  169 AKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            455666666653 45555555444443 3334444434444456899999999987 78999999999999998766666


Q ss_pred             chhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514          266 AGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~  344 (533)
                      .. +++.+.||.|++-|. -.-.++.++++.||-.++...+.   .++++|++...+.++.--...+++.|+.+..|+|.
T Consensus       248 a~-vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AI-VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             he-eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55 788999999998554 57789999999999999976543   88999999999999887777889999999999997


Q ss_pred             cCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC---CcchHHHHHhhcCchHHHHHHHhccCC---chh
Q 009514          345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG---RINSVEYIFAEDGIILDAVGRQLRIAS---KAE  418 (533)
Q Consensus       345 ~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~~~~~~~~L~~~L~~~~---~~~  418 (533)
                      .-.++.-..+.+  .+|.|.++|+..|.+..+.++.++..++++   .++..+++...+  ++....++|.-.+   +..
T Consensus       324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~d--Li~~~~qLlsvt~t~Ls~~  399 (1051)
T KOG0168|consen  324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHD--LITNIQQLLSVTPTILSNG  399 (1051)
T ss_pred             cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchh--HHHHHHHHHhcCccccccc
Confidence            655544445555  479999999999999999999999988866   456677777777  7777777776422   235


Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514          419 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  462 (533)
Q Consensus       419 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~  462 (533)
                      +....++.+.-++.+++-.+...+.       .++...+..+|.
T Consensus       400 ~~~~vIrmls~msS~~pl~~~tl~k-------~~I~~~L~~il~  436 (1051)
T KOG0168|consen  400 TYTGVIRMLSLMSSGSPLLFRTLLK-------LDIADTLKRILQ  436 (1051)
T ss_pred             chhHHHHHHHHHccCChHHHHHHHH-------hhHHHHHHHHHh
Confidence            6677788888888887765555554       466666666554

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.10  E-value=4.4e-08  Score=96.13  Aligned_cols=316  Identities=15%  Similarity=0.206  Sum_probs=213.1

Q ss_pred             ccchHHHHhhhc-CCCcchhHHHHHHHHHhhcCchhHHH-HHhc-----CchHHHHHhhcC-ChHHHHHHHHHHHHHhcC
Q 009514           16 EENMEFLLSLLN-NESENVSGLGASIISHSCKTSLEQKL-LFDA-----GVLKRLTSLLGG-SLIQRDASLESIATIFKN   87 (533)
Q Consensus        16 ~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~~~~~~~-i~~~-----g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~   87 (533)
                      +..+..++++|+ .+.+++.++....+..+......+.. +.+.     ....+.+.+|.+ +.-+...+...|+.+...
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence            467788999998 45688888888888888766555443 3332     345677778876 557889999999998654


Q ss_pred             ChhhhhhhccccCcccHH----HHHHHHhcC-ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC---Cc
Q 009514           88 NPEVVSQFVGPDTGRTLS----CIIEIVKDR-FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP---GR  159 (533)
Q Consensus        88 ~~~~~~~~~~~~~~~~i~----~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~  159 (533)
                      .+...       .+..++    .+...++++ +...+..++.||..+.....  .+..+...++++.|+++|+..   ..
T Consensus       132 ~~~~~-------~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~--~R~~f~~~~~v~~L~~~L~~~~~~~Q  202 (429)
T cd00256         132 GLAKM-------EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE--YRFAFVLADGVPTLVKLLSNATLGFQ  202 (429)
T ss_pred             Ccccc-------chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch--HHHHHHHccCHHHHHHHHhhccccHH
Confidence            43221       122233    334455544 46778888899999888764  355567788999999999843   36


Q ss_pred             hhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccc------hhhhHhhhhhchHH
Q 009514          160 VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL------ECCRSRCLSLQVLK  233 (533)
Q Consensus       160 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~------~~~~~~~~~~~~l~  233 (533)
                      ++.+++.++.-++.+.+. .......+.++.++++++... -.++..-++.+|.|+...+      ......+++.|+.+
T Consensus       203 l~Y~~ll~lWlLSF~~~~-~~~~~~~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~  280 (429)
T cd00256         203 LQYQSIFCIWLLTFNPHA-AEVLKRLSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK  280 (429)
T ss_pred             HHHHHHHHHHHHhccHHH-HHhhccccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH
Confidence            788999999888776553 344556788999999888774 3556667788889988632      12233455556555


Q ss_pred             HHHHhcCC---CCHHHHHHHHHHHHHHhhcc---------------ccccch--------------hhhh--cCcHHHHH
Q 009514          234 LVVDALAH---DSSDVRSAACMCLRSVSRSI---------------KNLSAG--------------SFMN--ETIVIPLV  279 (533)
Q Consensus       234 ~l~~~L~~---~~~~v~~~a~~~L~~ls~~~---------------~~~~~~--------------~~~~--~~~i~~Lv  279 (533)
                      . ++.|+.   .|+++...--..-..|....               +.++++              +|-+  ...+..|+
T Consensus       281 ~-l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~  359 (429)
T cd00256         281 T-LQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILI  359 (429)
T ss_pred             H-HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHH
Confidence            4 444442   24443322211111111100               111111              1222  23467899


Q ss_pred             Hhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514          280 RLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  343 (533)
Q Consensus       280 ~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~  343 (533)
                      ++|. +.|+.+..-||.=|+.++..++..+..+-+.|+=..+++++.++|+++|.+|+.|+..+.
T Consensus       360 ~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         360 HLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             HHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            9995 668899999999999999988888877777888888999999999999999999998774

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=4.4e-06  Score=84.96  Aligned_cols=435  Identities=15%  Similarity=0.173  Sum_probs=277.1

Q ss_pred             ccchHHHHhhhcCC-CcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHHHHhcCCh--
Q 009514           16 EENMEFLLSLLNNE-SENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNP--   89 (533)
Q Consensus        16 ~~~i~~L~~lL~~~-~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~~l~~~~~--   89 (533)
                      +..|+.|..=..+. =.+-|+.|+..|-.+++  .+|..+. ..|++++++.|..   ++.....++..+..+....+  
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            45677777766643 35567778888877764  4555444 4567999999975   56788899999988865442  


Q ss_pred             hh--------------hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhH-hhhHHHHHHhc
Q 009514           90 EV--------------VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-TKLINNLLELL  154 (533)
Q Consensus        90 ~~--------------~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~i~~L~~ll  154 (533)
                      .+              ...+.  ...+.|..++..+...|..||..|...+..+....+.+.++.+.. .-+|..|+.+|
T Consensus        98 ~v~dds~qsdd~g~~iae~fi--k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL  175 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFI--KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL  175 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHH--cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence            11              11111  134567778889999999999999999999988877666665544 47899999999


Q ss_pred             CCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCC-CCc-hhHHHHHHHHHHhhccchhhhHhhhhhch
Q 009514          155 DDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-LHP-RRFEGILLALADMCSKLECCRSRCLSLQV  231 (533)
Q Consensus       155 ~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-~~~-~~~~~a~~aL~~l~~~~~~~~~~~~~~~~  231 (533)
                      .|. ..+|.++.-.|..+..+++..++.+.=.++...|..++.... .+. -+.+.|+..|.+|-.++..++..+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            975 678999999999999999999998877888999999887542 222 46789999999999988888888999999


Q ss_pred             HHHHHHhcCC---CC-----HHH-----HHHHHHHHHHHhhccccc------cchhhhhcCcHHHHHHhhcCC--CHHHH
Q 009514          232 LKLVVDALAH---DS-----SDV-----RSAACMCLRSVSRSIKNL------SAGSFMNETIVIPLVRLLDDT--STAVQ  290 (533)
Q Consensus       232 l~~l~~~L~~---~~-----~~v-----~~~a~~~L~~ls~~~~~~------~~~~~~~~~~i~~Lv~lL~~~--~~~v~  290 (533)
                      +|.+.++|..   ++     |.-     ...+..+++.+... ++.      ++..+...+++..|..++-++  ..+++
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl  334 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-GNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL  334 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence            9999988862   22     211     23344445544322 111      111145678888898888665  57899


Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHhC---------cHHH-HHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhc
Q 009514          291 VAALGAISNIVVDFTTRRSTFIRLG---------GVKL-LVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELT  359 (533)
Q Consensus       291 ~~a~~aL~nl~~~~~~~~~~~~~~~---------~i~~-L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~  359 (533)
                      ..+.-++++...++..++..+....         .|-. ++.+..+. ....|.+.+.++..+.+.. .+.+.+++....
T Consensus       335 tesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN-~~gq~~~l~tll  413 (970)
T KOG0946|consen  335 TESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN-DDGQRKFLKTLL  413 (970)
T ss_pred             HHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc-hhhHHHHHHHHh
Confidence            9999999999988877776665421         1222 23344433 4678889999998887643 344544444310


Q ss_pred             -------------HHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-----cC----chHHHHHHH--hccCC
Q 009514          360 -------------ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-----DG----IILDAVGRQ--LRIAS  415 (533)
Q Consensus       360 -------------~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-----~~----~~~~~L~~~--L~~~~  415 (533)
                                   =..++..+.+.|+---.-++-+|.++...+...-+.+.+-     .|    .++......  +....
T Consensus       414 p~~~nst~Nsl~ag~l~~~~l~s~d~~~nwFt~v~lmh~l~dn~~~kEeLlrV~l~~~~gn~p~tlL~~~ct~~~~~~t~  493 (970)
T KOG0946|consen  414 PSSTNSTSNSLSAGQLLLVGLSSTDSLDNWFTAVILMHLLQDNDQLKEELLRVPLAVDTGNDPDTLLFQQCTNLKLQGTS  493 (970)
T ss_pred             hhhccccccchhhhhHHHHhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccCCCCchHHHHHHHHHHHHHhhh
Confidence                         0112222333322211222223333332221111111110     01    022221111  11112


Q ss_pred             chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc
Q 009514          416 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS  463 (533)
Q Consensus       416 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~  463 (533)
                      .+..+..-+..|+.+..+++.....++.      +.+.++.|...+-+
T Consensus       494 r~qt~vglLmlL~~WL~~cp~AV~dFLs------~~s~iq~Ltt~l~~  535 (970)
T KOG0946|consen  494 RHQTRVGLLMLLITWLYGCPDAVKDFLS------ESSIIQYLTTQLMD  535 (970)
T ss_pred             hHHHHHHHHHHHHHHHcCCcHHHHHHHc------cccHHHHHHHHHhh
Confidence            3455555677777788888876666665      46777777776654

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=7.1e-07  Score=89.66  Aligned_cols=247  Identities=13%  Similarity=0.132  Sum_probs=166.7

Q ss_pred             HHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhh
Q 009514           63 LTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG  141 (533)
Q Consensus        63 L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  141 (533)
                      ++-+|.+ -+=+|.+|+-.+..++...|+-.+        ..+|.+.+-+.++||.|+-+|+..++.+++.+|....   
T Consensus       149 v~tLL~sskpYvRKkAIl~lykvFLkYPeAlr--------~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---  217 (877)
T KOG1059|consen  149 VFTLLNSSKPYVRKKAILLLYKVFLKYPEALR--------PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---  217 (877)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh--------hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence            4555665 356889999999999877776542        4688999999999999999999999999998875432   


Q ss_pred             hHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHH--hhc
Q 009514          142 IKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALAD--MCS  217 (533)
Q Consensus       142 ~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~--l~~  217 (533)
                         ..-|.+.+++.  ++.++..+.....++|+--.+...+     ..+++|.+++.+... -.+.-.++.++-+  +..
T Consensus       218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~A-mSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVA-MSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHH-HHHHHHHHHHheeehhcc
Confidence               46688899997  4567778888888888877777654     457889988876531 1122223333222  121


Q ss_pred             cchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514          218 KLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAI  297 (533)
Q Consensus       218 ~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL  297 (533)
                      ..++.-..  -.-.++.|-.++.+.++.+++-++-+++.+...++..     + ...-..++++|.+.|+.+|..|+..+
T Consensus       289 g~~d~~as--iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~-----V-qa~kdlIlrcL~DkD~SIRlrALdLl  360 (877)
T KOG1059|consen  289 GMSDHSAS--IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA-----V-QAHKDLILRCLDDKDESIRLRALDLL  360 (877)
T ss_pred             CCCCcHHH--HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH-----H-HHhHHHHHHHhccCCchhHHHHHHHH
Confidence            11111000  1125777888889999999999999999987654332     1 12345688899999999999999999


Q ss_pred             HHHhcCCchhHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 009514          298 SNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       298 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~  344 (533)
                      ..++.  ..+..     .++..|+..+. .+....|..-+.-+..+|.
T Consensus       361 ~gmVs--kkNl~-----eIVk~LM~~~~~ae~t~yrdell~~II~iCS  401 (877)
T KOG1059|consen  361 YGMVS--KKNLM-----EIVKTLMKHVEKAEGTNYRDELLTRIISICS  401 (877)
T ss_pred             HHHhh--hhhHH-----HHHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence            88874  22221     24556664443 3333555555555555554

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=1.8e-06  Score=84.55  Aligned_cols=353  Identities=14%  Similarity=0.128  Sum_probs=225.3

Q ss_pred             cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHH
Q 009514          101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK  180 (533)
Q Consensus       101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~  180 (533)
                      .+.+++++..+.+.+..+|..|+..++|+++......  ......+...|.++..+.+.--..+++.+-++.++-..-+.
T Consensus        83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v--~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV--LVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA  160 (675)
T ss_pred             HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc--ccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence            3578899999999999999999999999988653321  12334566777777776554445666777766543211111


Q ss_pred             HHHHcCcHHHHHHhhhcC--CCCchhHHHHHHHHHHhhccchhhhHhhh-hhchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009514          181 LAFEVNGVDKLYNHLQKG--SLHPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDSSDVRSAACMCLRSV  257 (533)
Q Consensus       181 ~~~~~~~l~~L~~~L~~~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~l~~~L~~~~~~v~~~a~~~L~~l  257 (533)
                      .   .=-++.++.+|...  ..++..|...+.-|..+-... .. +.+. -...++.+.++|.+++++||..+-.++.++
T Consensus       161 ~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f  235 (675)
T KOG0212|consen  161 S---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DL-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF  235 (675)
T ss_pred             c---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cH-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            0   01245555544432  124677887777777664322 21 2222 235788899999999999998888888777


Q ss_pred             hhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCH-HHHHHHH
Q 009514          258 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS-TIRLNAL  336 (533)
Q Consensus       258 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~al  336 (533)
                      -....+.... +.-...++.++.-+.+++++++..|..-|..+..-++..- ...-.|++..++..+.+.++ ..+..+.
T Consensus       236 L~eI~s~P~s-~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~  313 (675)
T KOG0212|consen  236 LAEIRSSPSS-MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQ  313 (675)
T ss_pred             HHHHhcCccc-cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHH
Confidence            4432222222 2335678889999999999999999888888776544422 22234666666666665544 3444443


Q ss_pred             HHH---HHhhccCChHhHHHHHHh-hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc
Q 009514          337 RAL---RNLIFLAEDKCKEEIFME-LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR  412 (533)
Q Consensus       337 ~aL---~~l~~~~~~~~~~~i~~~-~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~  412 (533)
                      ..-   ..++  +++..++. ++- ..++++.+.+.++..+.+..++.-+..+-...|.   +++.....++..|.+.|+
T Consensus       314 ~~n~~l~~l~--s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~---ql~~h~~~if~tLL~tLs  387 (675)
T KOG0212|consen  314 MVNGLLLKLV--SSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG---QLLVHNDSIFLTLLKTLS  387 (675)
T ss_pred             HHHHHHHHHH--hhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc---hhhhhccHHHHHHHHhhc
Confidence            222   2222  12222222 222 2478888899999999999999888888766554   344444447888888888


Q ss_pred             cCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          413 IASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       413 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      + ++++|...++..+.+++....+.  ..         -.++..|.++......-+...+...+.+++
T Consensus       388 d-~sd~vvl~~L~lla~i~~s~~~~--~~---------~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC  443 (675)
T KOG0212|consen  388 D-RSDEVVLLALSLLASICSSSNSP--NL---------RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC  443 (675)
T ss_pred             C-chhHHHHHHHHHHHHHhcCcccc--cH---------HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence            8 88999999999999999765432  11         123345555555555556667777777666

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.7e-06  Score=88.20  Aligned_cols=398  Identities=14%  Similarity=0.161  Sum_probs=228.3

Q ss_pred             hcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccH
Q 009514           26 LNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTL  104 (533)
Q Consensus        26 L~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i  104 (533)
                      |++++.-+...|..+|+++|...--|.      ..|-+-++++. ++-+|.+|+.|..++..-.|+....        .+
T Consensus       116 L~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~--------f~  181 (866)
T KOG1062|consen  116 LNSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH--------FV  181 (866)
T ss_pred             ccCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH--------hh
Confidence            446677778888889998884322222      34556667765 6789999999999988888877543        45


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC---------C-------CCchhhhHHHHH
Q 009514          105 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---------D-------PGRVGDEASFAF  168 (533)
Q Consensus       105 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~---------~-------~~~~~~~a~~~L  168 (533)
                      +.-.+++.+.+..|-..++..+..++..++. ..+  .....++-|+..|+         +       ++-+|....+.|
T Consensus       182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~--~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL  258 (866)
T KOG1062|consen  182 IAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALS--YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL  258 (866)
T ss_pred             HHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHH--HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH
Confidence            5666777777778777777777777776542 111  11235555555553         0       122456666666


Q ss_pred             HhhhcCCHHHHHHHHH--------------------cCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh-
Q 009514          169 SSLIAEKEDMQKLAFE--------------------VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL-  227 (533)
Q Consensus       169 ~~l~~~~~~~~~~~~~--------------------~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-  227 (533)
                      .-+..++++....+.+                    ..++..+..+ .   .++..|+.|+.+|+.+-.+.+.+-+.+. 
T Consensus       259 riLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I-~---~~~~LrvlainiLgkFL~n~d~NirYvaL  334 (866)
T KOG1062|consen  259 RILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI-R---SNSGLRVLAINILGKFLLNRDNNIRYVAL  334 (866)
T ss_pred             HHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc-c---CCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence            6666555443322211                    0123333331 1   2356888888888888776554433221 


Q ss_pred             ---------hhc----hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHH
Q 009514          228 ---------SLQ----VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAAL  294 (533)
Q Consensus       228 ---------~~~----~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~  294 (533)
                               +..    --..++++|++++..+|..|...+..+... .|.+       ..+..|+..|...+++++..++
T Consensus       335 n~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~-------~mv~eLl~fL~~~d~~~k~~~a  406 (866)
T KOG1062|consen  335 NMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVR-------VMVKELLEFLESSDEDFKADIA  406 (866)
T ss_pred             hhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHH-------HHHHHHHHHHHhccHHHHHHHH
Confidence                     111    234578889999999999999998888765 3432       3466788888888999999999


Q ss_pred             HHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHH----HHHhhcHHHHHhhhCCC
Q 009514          295 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEE----IFMELTASLLASLICDP  370 (533)
Q Consensus       295 ~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~----i~~~~~~~~l~~lL~~~  370 (533)
                      .-+..++..+.+.+.+.++     .+.+.+......++..+...+..+..+..++....    +........   ++.-+
T Consensus       407 s~I~~laEkfaP~k~W~id-----tml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~---~~~is  478 (866)
T KOG1062|consen  407 SKIAELAEKFAPDKRWHID-----TMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDT---LLDIS  478 (866)
T ss_pred             HHHHHHHHhcCCcchhHHH-----HHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhh---hhhhh
Confidence            9999999877665544442     33333333222222222222322222221111111    111111111   22234


Q ss_pred             ChhHHHHHHHHHHHhh----cCCc-chHHHHHhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCChhhHHHHHHH
Q 009514          371 EPSVQEQALALVRNLV----DGRI-NSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQ  444 (533)
Q Consensus       371 ~~~v~~~a~~~L~~l~----~~~~-~~~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  444 (533)
                      .+.+..-+.|+|+.-.    .+.. +....+-++.  ++..+.+.+.++ .+..++..++.++..+.....+..+.+   
T Consensus       479 ~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesd--ivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri---  553 (866)
T KOG1062|consen  479 QEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESD--IVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERI---  553 (866)
T ss_pred             hhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHH---
Confidence            4556777788887543    1100 0000111111  667777776654 356788999999999987654332222   


Q ss_pred             hhHhhhhhhHHHHHHhhccCChhHHHHHHH
Q 009514          445 LLLRAENKAQSCIIKFLQSNDSRLRTAAVW  474 (533)
Q Consensus       445 ~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~  474 (533)
                               -..+..+..+.+.++|..|..
T Consensus       554 ---------~~lI~~~~~s~~~elQQRa~E  574 (866)
T KOG1062|consen  554 ---------KQLISSYKSSLDTELQQRAVE  574 (866)
T ss_pred             ---------HHHHHHhcccccHHHHHHHHH
Confidence                     133444555666677766654

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=5.1e-08  Score=91.10  Aligned_cols=189  Identities=19%  Similarity=0.223  Sum_probs=150.7

Q ss_pred             hhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCc
Q 009514          195 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI  274 (533)
Q Consensus       195 L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~  274 (533)
                      +..++.+.+-++.|+.-|..++.+- ++-..+...|++.+++.++++.+..+|..|++.|+..+++.+..... +.+.|+
T Consensus        90 ~~~~s~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~-v~E~~~  167 (342)
T KOG2160|consen   90 LNSSSVDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQ-VIELGA  167 (342)
T ss_pred             cCcccCCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHccc
Confidence            4444456777888998888888643 44567888999999999999999999999999999999986665555 789999


Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhccCChHhH
Q 009514          275 VIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCK  351 (533)
Q Consensus       275 i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~al~aL~~l~~~~~~~~~  351 (533)
                      .+.|+.++.+ ++..++..|..|++.+..++.+....+...++...|...+++  .+..++..++..+..+.... ...+
T Consensus       168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~  246 (342)
T KOG2160|consen  168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDE  246 (342)
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhh
Confidence            9999999974 566788999999999999999999899999999999999998  45778889999999998643 3333


Q ss_pred             HHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514          352 EEIFMELTASLLASLICDPEPSVQEQALALVRNLV  386 (533)
Q Consensus       352 ~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~  386 (533)
                      ..+-..+....+..+....+.++.+.++.++..+.
T Consensus       247 d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  247 DIASSLGFQRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            43344444555666667778888888887665554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=9.6e-06  Score=82.90  Aligned_cols=386  Identities=15%  Similarity=0.152  Sum_probs=207.7

Q ss_pred             hHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHH
Q 009514           71 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL  150 (533)
Q Consensus        71 ~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L  150 (533)
                      .-+...|+.+|++++.  ++..+        ...|.+-+++++.++.+|..|+.|+..+.+..|+      ..+.+++..
T Consensus       121 q~vVglAL~alg~i~s--~Emar--------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~------l~e~f~~~~  184 (866)
T KOG1062|consen  121 QYVVGLALCALGNICS--PEMAR--------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD------LVEHFVIAF  184 (866)
T ss_pred             eeehHHHHHHhhccCC--HHHhH--------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch------HHHHhhHHH
Confidence            3466788999999863  56654        3467788899999999999999999999887653      234577888


Q ss_pred             HHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCC---C----------CchhHHHHHHHHHHhh
Q 009514          151 LELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS---L----------HPRRFEGILLALADMC  216 (533)
Q Consensus       151 ~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~---~----------~~~~~~~a~~aL~~l~  216 (533)
                      .++|.+ +..+.......+..+.+.+++.-....+  .++.|+..|++-.   .          +|-++...++.|    
T Consensus       185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL----  258 (866)
T KOG1062|consen  185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL----  258 (866)
T ss_pred             HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH----
Confidence            888874 5667777777888888776654443333  5666776665421   1          122333333333    


Q ss_pred             ccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHH
Q 009514          217 SKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALG  295 (533)
Q Consensus       217 ~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~  295 (533)
                                          .+|..++++........|..+++..+..+..  ..+=..+.+-.++. .++..++..|+.
T Consensus       259 --------------------riLGq~d~daSd~M~DiLaqvatntdsskN~--GnAILYE~V~TI~~I~~~~~Lrvlain  316 (866)
T KOG1062|consen  259 --------------------RILGQNDADASDLMNDILAQVATNTDSSKNA--GNAILYECVRTIMDIRSNSGLRVLAIN  316 (866)
T ss_pred             --------------------HHhcCCCccHHHHHHHHHHHHHhcccccccc--hhHHHHHHHHHHHhccCCchHHHHHHH
Confidence                                4444555555555555666655543221111  11111112222222 345556666666


Q ss_pred             HHHHHhcCCchhHHHHHH----------hC----cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHH
Q 009514          296 AISNIVVDFTTRRSTFIR----------LG----GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS  361 (533)
Q Consensus       296 aL~nl~~~~~~~~~~~~~----------~~----~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~  361 (533)
                      +|+.+..+...+.+.+.=          ..    -=..+++-++++|..+|..|++.+..++...+  .+      ..+.
T Consensus       317 iLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N--v~------~mv~  388 (866)
T KOG1062|consen  317 ILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN--VR------VMVK  388 (866)
T ss_pred             HHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HH------HHHH
Confidence            666655544433322110          00    01234455666677777777777766654322  11      1245


Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc---CCchhHHHHHHHHHHHhccCChhhH
Q 009514          362 LLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI---ASKAEIEIQGMYVLGNVATGKESHK  438 (533)
Q Consensus       362 ~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~---~~~~~v~~~a~~~L~~l~~~~~~~~  438 (533)
                      .++.+|...+++.+.....-+..+++.-...-.+       .++.+.+.|..   .-++++...-+..|.+-.  .+.+.
T Consensus       389 eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W-------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~--~e~~~  459 (866)
T KOG1062|consen  389 ELLEFLESSDEDFKADIASKIAELAEKFAPDKRW-------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAF--QELHE  459 (866)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh-------HHHHHHHHHHhcccccchhhHHHHHHHHhcCC--cchhh
Confidence            6677787778888888888777777542211112       22333333333   123444444444544421  12222


Q ss_pred             HHHHHHhhHhhhhhhHHHHH-H-hhccCChhHHHHHHHHHHhhcC-CCCCCcHHHHHHHHHCCcHHHHHhhhcCC--CCc
Q 009514          439 EAVMDQLLLRAENKAQSCII-K-FLQSNDSRLRTAAVWAVLNLTC-SSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLD  513 (533)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~lv-~-~L~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~  513 (533)
                      ..+..         +...+. . ++.-....+..-+.|+|+.... --+++..+-.....++.++..|.+++...  +..
T Consensus       460 y~~~r---------Ly~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~  530 (866)
T KOG1062|consen  460 YAVLR---------LYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDST  530 (866)
T ss_pred             HHHHH---------HHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHH
Confidence            22211         001111 1 1112334456788899988771 00111112222344566777888877543  445


Q ss_pred             HHHHHHHHHHHHh
Q 009514          514 VKLRVKTALEQFN  526 (533)
Q Consensus       514 v~~~a~~aL~~~~  526 (533)
                      ++-.|..||..++
T Consensus       531 tk~yal~Al~KLS  543 (866)
T KOG1062|consen  531 TKGYALTALLKLS  543 (866)
T ss_pred             HHHHHHHHHHHHH
Confidence            5556677776664

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.94  E-value=5.3e-07  Score=94.46  Aligned_cols=391  Identities=16%  Similarity=0.118  Sum_probs=237.4

Q ss_pred             HHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcC
Q 009514          108 IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVN  186 (533)
Q Consensus       108 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (533)
                      -++.++..+.+|..++.-+.+++....    ......+.+|.+.++..|+ +.++..|...+..+...-..-.  -....
T Consensus       243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~~----~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~  316 (759)
T KOG0211|consen  243 QSLCQDDTPMVRRAVASNLGNIAKVLE----SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKS  316 (759)
T ss_pred             HhhccccchhhHHHHHhhhHHHHHHHH----HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhh
Confidence            457789999999999999999888643    2456778999999999864 6788877777776653211100  11223


Q ss_pred             cHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc
Q 009514          187 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA  266 (533)
Q Consensus       187 ~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~  266 (533)
                      ..+.+++...+.  ++.++.........+..   ...........++.....+++..++++.+.+.-...++......+.
T Consensus       317 ~~~~l~~~~~d~--~~~v~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~  391 (759)
T KOG0211|consen  317 LTESLVQAVEDG--SWRVSYMVADKFSELSS---AVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY  391 (759)
T ss_pred             hhHHHHHHhcCh--hHHHHHHHhhhhhhHHH---HhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence            457777755554  36666655555555542   2222233445688899999999999999998887777655332121


Q ss_pred             hhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 009514          267 GSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA  346 (533)
Q Consensus       267 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~  346 (533)
                      ..+....++|.+-.+..+.++.++.+.+..+.++..-.+  +...+ ....|.++..+++..+.++.+..+.+..+-...
T Consensus       392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~  468 (759)
T KOG0211|consen  392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN  468 (759)
T ss_pred             cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence            114555667888888889999999999988888764333  11111 245667777888888999999888776553222


Q ss_pred             ChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHH
Q 009514          347 EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV  426 (533)
Q Consensus       347 ~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~  426 (533)
                      + ......+....++.+..+-.+..+.++...++.+--++....   ..++...  .-+.+...+.+ ..-+++.+|+..
T Consensus       469 ~-v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~--~~~l~~~~l~d-~v~~Ir~~aa~~  541 (759)
T KOG0211|consen  469 D-VIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEK--LAELLRTWLPD-HVYSIREAAARN  541 (759)
T ss_pred             C-cccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHH--HHHHHHhhhhh-hHHHHHHHHHHH
Confidence            1 122333444456666666666677777777766655553311   1111111  11111111111 223344444444


Q ss_pred             HHHhcc--CChhhHHHHHHHh---------------------------hHhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 009514          427 LGNVAT--GKESHKEAVMDQL---------------------------LLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL  477 (533)
Q Consensus       427 L~~l~~--~~~~~~~~~~~~~---------------------------~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~  477 (533)
                      +..++.  |.++.++.++...                           .+.+...++|.+.++..++.++||.+++..+.
T Consensus       542 l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~  621 (759)
T KOG0211|consen  542 LPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLP  621 (759)
T ss_pred             hHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHH
Confidence            333332  2222222111100                           00112456777777778888888888888888


Q ss_pred             hhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          478 NLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       478 ~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                      .+..    .   -....++..+.|.+..+.+|++.+++.+|..|++.+.
T Consensus       622 ~i~~----~---L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~  663 (759)
T KOG0211|consen  622 KILK----L---LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE  663 (759)
T ss_pred             HHHh----h---cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence            7774    1   1234556667788888888888888888888887764

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.92  E-value=1e-06  Score=87.00  Aligned_cols=452  Identities=15%  Similarity=0.097  Sum_probs=239.4

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchh-HHHHHhcCchHHHHHhhc-----C---ChHHHHHHHHHHHHHhc
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLE-QKLLFDAGVLKRLTSLLG-----G---SLIQRDASLESIATIFK   86 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~-~~~i~~~g~i~~L~~lL~-----~---~~~v~~~al~aL~~l~~   86 (533)
                      ...+..+.+.++++++........+...|...... .+.+++ .+.|.+.+-.-     +   +.++-..+-..++.+..
T Consensus       440 re~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~-~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g  518 (975)
T COG5181         440 REHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRD-QVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGG  518 (975)
T ss_pred             HHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHH-hhcHHhhchHHHhhhcccccccceeehhHHHHHHHcC
Confidence            35677888888888887777666666666543322 222332 23333322211     1   11111122222333221


Q ss_pred             CChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-C--chhhh
Q 009514           87 NNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-G--RVGDE  163 (533)
Q Consensus        87 ~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~--~~~~~  163 (533)
                                   ....+..++.-.+++...-|..++.........-+....++...+..+..++..+++. .  .+-..
T Consensus       519 -------------~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~  585 (975)
T COG5181         519 -------------DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILP  585 (975)
T ss_pred             -------------ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEe
Confidence                         1223455666666666555555554444433222111223344455555555555532 1  12112


Q ss_pred             HHHHHH-hhh-cCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh--hHhhhhhchHHHHHHhc
Q 009514          164 ASFAFS-SLI-AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC--RSRCLSLQVLKLVVDAL  239 (533)
Q Consensus       164 a~~~L~-~l~-~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~--~~~~~~~~~l~~l~~~L  239 (533)
                      +..+.. .+- ...+..      .-.+..++..|.+.  +|.+|+.|+...+.++.--..+  .+.+...|.  .|.+.|
T Consensus       586 ~f~tv~vsl~~r~kp~l------~~ivStiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l  655 (975)
T COG5181         586 CFSTVLVSLEFRGKPHL------SMIVSTILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL  655 (975)
T ss_pred             cccceeeehhhccCcch------HHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc
Confidence            111111 000 011111      11234556667665  4789999998888776422111  122333333  366788


Q ss_pred             CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh---HHHHHHhCc
Q 009514          240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR---RSTFIRLGG  316 (533)
Q Consensus       240 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~---~~~~~~~~~  316 (533)
                      ....+++.-...++++.+.....-.... -=..|++|.|..+|++...+++......++.++...++.   ++.+.   +
T Consensus       656 ge~ypEvLgsil~Ai~~I~sv~~~~~mq-pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---I  731 (975)
T COG5181         656 GEDYPEVLGSILKAICSIYSVHRFRSMQ-PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---I  731 (975)
T ss_pred             CcccHHHHHHHHHHHHHHhhhhcccccC-CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---H
Confidence            8889988877777777775432211100 123589999999999999999999999998888765542   33222   2


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514          317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI  396 (533)
Q Consensus       317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  396 (533)
                      -=.|+.++++.+.++|.+|..+++.++..-+|.        ..+..|+.-|+..+...  ..+..+.         +..+
T Consensus       732 cfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq--------dvL~~LlnnLkvqeRq~--Rvctsva---------I~iV  792 (975)
T COG5181         732 CFELVDSLKSWNKEIRRNATETFGCISRAIGPQ--------DVLDILLNNLKVQERQQ--RVCTSVA---------ISIV  792 (975)
T ss_pred             HHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH--------HHHHHHHhcchHHHHHh--hhhhhhh---------hhhh
Confidence            334677888899999999999999887655441        11223333333222222  2221111         1111


Q ss_pred             HhhcCc--hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHH
Q 009514          397 FAEDGI--ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW  474 (533)
Q Consensus       397 ~~~~~~--~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~  474 (533)
                      -+..|.  +++.|..--.. |+..||...+.+++.+...-.+.....+        +.+.|.+-..|.+.|+..|..|..
T Consensus       793 ae~cgpfsVlP~lm~dY~T-Pe~nVQnGvLkam~fmFeyig~~s~dYv--------y~itPlleDAltDrD~vhRqta~n  863 (975)
T COG5181         793 AEYCGPFSVLPTLMSDYET-PEANVQNGVLKAMCFMFEYIGQASLDYV--------YSITPLLEDALTDRDPVHRQTAMN  863 (975)
T ss_pred             HhhcCchhhHHHHHhcccC-chhHHHHhHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHhhhcccchHHHHHHHH
Confidence            122221  45555443444 6667888888888777642111122222        456688889999999999999999


Q ss_pred             HHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          475 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       475 ~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      .|..++-+ +.|+.+--..+.   .+-.|..-.-+++|-+..+..+.+..|+.
T Consensus       864 vI~Hl~Ln-c~gtg~eda~IH---LlNllwpNIle~sPhvi~~~~Eg~e~~~~  912 (975)
T COG5181         864 VIRHLVLN-CPGTGDEDAAIH---LLNLLWPNILEPSPHVIQSFDEGMESFAT  912 (975)
T ss_pred             HHHHHhcC-CCCcccHHHHHH---HHHHhhhhccCCCcHHHHHHHHHHHHHHH
Confidence            99999875 333321111110   01122222235677777666666665543

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=9.3e-06  Score=81.15  Aligned_cols=368  Identities=14%  Similarity=0.107  Sum_probs=228.0

Q ss_pred             hHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHH
Q 009514           71 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL  150 (533)
Q Consensus        71 ~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L  150 (533)
                      +.+|++.+.--+.++++-+..-.     .....+..++.-+..+.+.+|.+...||..+.......     -.....+.+
T Consensus        70 ~~~~~~~~v~~~~~a~~~~~~d~-----~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~-----~~~~~l~~l  139 (569)
T KOG1242|consen   70 DNLRNNVVVLEGTLAFHLQIVDP-----RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL-----SGEYVLELL  139 (569)
T ss_pred             HHHhhhhHHHHHHHHHhccccCc-----chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc-----CHHHHHHHH
Confidence            45666665555555543222110     01234455566777788899999999999877654321     123567778


Q ss_pred             HHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh
Q 009514          151 LELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL  229 (533)
Q Consensus       151 ~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~  229 (533)
                      .++++.. ..-+..+++.++.+..+..-  ....+.+.+..+-+.+.+. .+...++.+..+.-..+.+-.    ...+.
T Consensus       140 ~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk-~~~~~re~~~~a~~~~~~~Lg----~~~EP  212 (569)
T KOG1242|consen  140 LELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDK-KSALNREAALLAFEAAQGNLG----PPFEP  212 (569)
T ss_pred             HHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhccc-chhhcHHHHHHHHHHHHHhcC----CCCCc
Confidence            8888732 33466777888877766543  2233445566666656554 234455544444333332211    12222


Q ss_pred             c---hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 009514          230 Q---VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT  306 (533)
Q Consensus       230 ~---~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~  306 (533)
                      .   .+|.++.-..+..+.||.+|..+...+-+..+..     .-..++|.++.-+.+..+..+..++..++.++..- +
T Consensus       213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-----aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p  286 (569)
T KOG1242|consen  213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-----AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-P  286 (569)
T ss_pred             hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-----hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-h
Confidence            3   4555555556778899999999998886653321     22345677776666568889999999999888643 4


Q ss_pred             hHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514          307 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  386 (533)
Q Consensus       307 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~  386 (533)
                      ..-......++|.+.+.+.+..+++|.++..++.+++.-.++  .+ + . ..++.++..+.+++.++.+..-.....-+
T Consensus       287 ~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN--~d-I-~-~~ip~Lld~l~dp~~~~~e~~~~L~~ttF  361 (569)
T KOG1242|consen  287 KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN--PD-I-Q-KIIPTLLDALADPSCYTPECLDSLGATTF  361 (569)
T ss_pred             HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc--HH-H-H-HHHHHHHHHhcCcccchHHHHHhhcceee
Confidence            343555578999999999999999999999999998753332  11 1 1 13677777777776444433222111110


Q ss_pred             cCCcchHHHHHh-hcCchHHHHHHHhccCCchhHHHHHHHHHHHhccC--ChhhHHHHHHHhhHhhhhhhHHHHHHhhcc
Q 009514          387 DGRINSVEYIFA-EDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG--KESHKEAVMDQLLLRAENKAQSCIIKFLQS  463 (533)
Q Consensus       387 ~~~~~~~~~i~~-~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~  463 (533)
                            +..+-. ....+++.|.+-+.. .+..++..++-++.|++.-  ++.....++        ..++|.+-..+.+
T Consensus       362 ------V~~V~~psLalmvpiL~R~l~e-Rst~~kr~t~~IidNm~~LveDp~~lapfl--------~~Llp~lk~~~~d  426 (569)
T KOG1242|consen  362 ------VAEVDAPSLALMVPILKRGLAE-RSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--------PSLLPGLKENLDD  426 (569)
T ss_pred             ------eeeecchhHHHHHHHHHHHHhh-ccchhhhhHHHHHHHHHHhhcCHHHHhhhH--------HHHhhHHHHHhcC
Confidence                  000000 001145556555555 6778889999999999873  333344444        3566777778888


Q ss_pred             CChhHHHHHHHHHHhhcC
Q 009514          464 NDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       464 ~~~~v~~~a~~~L~~l~~  481 (533)
                      +.+++|..++.+|+.+..
T Consensus       427 ~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  427 AVPEVRAVAARALGALLE  444 (569)
T ss_pred             CChhHHHHHHHHHHHHHH
Confidence            899999999999987774

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.89  E-value=7.6e-06  Score=84.83  Aligned_cols=426  Identities=14%  Similarity=0.102  Sum_probs=222.4

Q ss_pred             HHhhhc--CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhcccc
Q 009514           22 LLSLLN--NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPD   99 (533)
Q Consensus        22 L~~lL~--~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~   99 (533)
                      -++.|.  +.|..|+++|..+.+.+-..-..+....-...++.++.-|++ ...|-.|.+|+..++...-++-.   ...
T Consensus       573 tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n-EiTRl~AvkAlt~Ia~S~l~i~l---~~~  648 (1233)
T KOG1824|consen  573 TLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN-EITRLTAVKALTLIAMSPLDIDL---SPV  648 (1233)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-hhHHHHHHHHHHHHHhccceeeh---hhh
Confidence            344444  346788999988887643221111111112234444444444 45678888999888765433210   001


Q ss_pred             CcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHH
Q 009514          100 TGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDM  178 (533)
Q Consensus       100 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~  178 (533)
                      -...++.+...++-.....|.+...++-.+.......... -...-++..+-.++++. -.+-..|...|+.++...+..
T Consensus       649 l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~-~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~  727 (1233)
T KOG1824|consen  649 LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPA-ELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSS  727 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence            1346666776666544455555555555554433221121 12233455555556543 345566777777776665543


Q ss_pred             HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh---ch-HHHHHHhcCCCC---------HH
Q 009514          179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL---QV-LKLVVDALAHDS---------SD  245 (533)
Q Consensus       179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~---~~-l~~l~~~L~~~~---------~~  245 (533)
                      - ..+..-.++.++.+++++-    ++-.++.++..+-       ..++..   +. ...++.++..+-         ..
T Consensus       728 l-~~~~~~iL~~ii~ll~Spl----lqg~al~~~l~~f-------~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kq  795 (1233)
T KOG1824|consen  728 L-LKISNPILDEIIRLLRSPL----LQGGALSALLLFF-------QALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQ  795 (1233)
T ss_pred             H-HHHhhhhHHHHHHHhhCcc----ccchHHHHHHHHH-------HHHHhcCCCCccHHHHHHHHcCCcccccccchhHH
Confidence            2 2223345688888777653    3333433332221       111111   11 444555555331         12


Q ss_pred             HHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh
Q 009514          246 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL  323 (533)
Q Consensus       246 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l  323 (533)
                      .-...+.|...++...+...      ......|++=+.  ..+..++..|.-.++.+-.+....-    ..+.-..+++.
T Consensus       796 a~~siA~cvA~Lt~~~~~~s------~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iiea  865 (1233)
T KOG1824|consen  796 AYYSIAKCVAALTCACPQKS------KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEA  865 (1233)
T ss_pred             HHHHHHHHHHHHHHhccccc------hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHH
Confidence            23344555555555433211      122334444333  4467788888888888876443221    12223356688


Q ss_pred             hcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhh---------cHHHHHhhhCCCC----hhHHHHHHHHHHHhhcCCc
Q 009514          324 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL---------TASLLASLICDPE----PSVQEQALALVRNLVDGRI  390 (533)
Q Consensus       324 l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~---------~~~~l~~lL~~~~----~~v~~~a~~~L~~l~~~~~  390 (533)
                      +++++.+++.+|..||++++.+.-+..-..+.+..         .+-.+.+.+...+    ....+..-..|.+-|.+..
T Consensus       866 f~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e  945 (1233)
T KOG1824|consen  866 FNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE  945 (1233)
T ss_pred             cCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch
Confidence            88999999999999999998765444333333221         1112222222111    1112222223333333333


Q ss_pred             chHHHHHhh-cC--------chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 009514          391 NSVEYIFAE-DG--------IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL  461 (533)
Q Consensus       391 ~~~~~i~~~-~~--------~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L  461 (533)
                      +....++.+ .|        .+++.|...+.+ +.+..+..+..+.-......+...+.++.        ..+..+..++
T Consensus       946 egtR~vvAECLGkL~l~epesLlpkL~~~~~S-~a~~~rs~vvsavKfsisd~p~~id~~lk--------~~ig~fl~~~ 1016 (1233)
T KOG1824|consen  946 EGTRNVVAECLGKLVLIEPESLLPKLKLLLRS-EASNTRSSVVSAVKFSISDQPQPIDPLLK--------QQIGDFLKLL 1016 (1233)
T ss_pred             hhhHHHHHHHhhhHHhCChHHHHHHHHHHhcC-CCcchhhhhhheeeeeecCCCCccCHHHH--------HHHHHHHHHH
Confidence            333333222 12        156777666666 77777777766665444444445555553        3446777888


Q ss_pred             ccCChhHHHHHHHHHHhhcCCC
Q 009514          462 QSNDSRLRTAAVWAVLNLTCSS  483 (533)
Q Consensus       462 ~~~~~~v~~~a~~~L~~l~~~~  483 (533)
                      +++|.+||..|..++...+.++
T Consensus      1017 ~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 1017 RDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred             hCCchhHHHHHHHHHHHHHccC
Confidence            9999999999999999999743

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.89  E-value=4.8e-06  Score=84.03  Aligned_cols=462  Identities=13%  Similarity=0.100  Sum_probs=254.3

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCch-hHHHHHhcCchHHHHHhh-cC----ChHHHHHHHHHHHHHhcCChhh
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSL-EQKLLFDAGVLKRLTSLL-GG----SLIQRDASLESIATIFKNNPEV   91 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~-~~~~i~~~g~i~~L~~lL-~~----~~~v~~~al~aL~~l~~~~~~~   91 (533)
                      .+..+=+.|.+++..|+.-++.+++.++.... ...     +....++..| ++    .-+.....++|++.++...+..
T Consensus       554 lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygi-----e~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~e  628 (1172)
T KOG0213|consen  554 LVKIIEHGLKDEQQKVRTITALALSALAEAATPYGI-----EQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAE  628 (1172)
T ss_pred             HHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHH
Confidence            34555566667788888888888887774211 111     1122222222 22    2245567788999988554332


Q ss_pred             -hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC------CC---Cchh
Q 009514           92 -VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD------DP---GRVG  161 (533)
Q Consensus        92 -~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~------~~---~~~~  161 (533)
                       ...+    .......+++-+.++|.+.+.-.++.+...+....  .....+....+|.++...-      +.   ..+-
T Consensus       629 ya~yy----Trevmlil~rEf~sPDeemkkivLKVv~qcc~t~G--v~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv  702 (1172)
T KOG0213|consen  629 YASYY----TREVMLILIREFGSPDEEMKKIVLKVVKQCCATDG--VEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLV  702 (1172)
T ss_pred             HHHHh----HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccC--CCHHHHhhhhhHHHHhhhhhhhhhccccchhhHH
Confidence             2111    12334445666778888888877777777665543  2344566777887776552      11   1111


Q ss_pred             hhHH-------------HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHH-hhccchhh-----
Q 009514          162 DEAS-------------FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALAD-MCSKLECC-----  222 (533)
Q Consensus       162 ~~a~-------------~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~-l~~~~~~~-----  222 (533)
                      ..+.             ..+..+-.+.+..++.  ..+.+.+++..|.....+...-+.-+..+.+ +...+.+.     
T Consensus       703 ~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm--~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~  780 (1172)
T KOG0213|consen  703 DTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKM--VAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLL  780 (1172)
T ss_pred             HHHHHHHHHhCchHHHHHHhhhhccccHHHHHH--HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhh
Confidence            1111             1111221222222221  1234555555444333233222222222221 11111000     


Q ss_pred             -----hHhhhh------hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcH-HHHHHhhcCCCHHHH
Q 009514          223 -----RSRCLS------LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV-IPLVRLLDDTSTAVQ  290 (533)
Q Consensus       223 -----~~~~~~------~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i-~~Lv~lL~~~~~~v~  290 (533)
                           .+.+..      ..++..++..|+++++.+|++|+..+..++...+.-...  ...|.+ -.|.+.|..+.+++.
T Consensus       781 gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee--~~m~~lGvvLyEylgeeypEvL  858 (1172)
T KOG0213|consen  781 GFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE--KLMGHLGVVLYEYLGEEYPEVL  858 (1172)
T ss_pred             hHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH--HHHHHhhHHHHHhcCcccHHHH
Confidence                 011111      124455666788999999999999999987542221111  111222 247778888999999


Q ss_pred             HHHHHHHHHHhcCCchhH-HHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh--HHHHHHhhcHHHHHhhh
Q 009514          291 VAALGAISNIVVDFTTRR-STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC--KEEIFMELTASLLASLI  367 (533)
Q Consensus       291 ~~a~~aL~nl~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~--~~~i~~~~~~~~l~~lL  367 (533)
                      ...+.||..+.....-.+ ...+ .+.+|.|...|++.+..++.+++..++.++...+...  |+.+.=   ---|+++|
T Consensus       859 gsILgAikaI~nvigm~km~pPi-~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI---cfeLlelL  934 (1172)
T KOG0213|consen  859 GSILGAIKAIVNVIGMTKMTPPI-KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI---CFELLELL  934 (1172)
T ss_pred             HHHHHHHHHHHHhccccccCCCh-hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHH
Confidence            988888877764221111 0111 4789999999999999999999999999987554321  222211   22467788


Q ss_pred             CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhH
Q 009514          368 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL  447 (533)
Q Consensus       368 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  447 (533)
                      .+.+.+++..+...++.++..-.       ...  ++..|...|.. .+-+-+....-+|+-.+..+.            
T Consensus       935 kahkK~iRRaa~nTfG~IakaIG-------Pqd--VLatLlnnLkv-qeRq~RvcTtvaIaIVaE~c~------------  992 (1172)
T KOG0213|consen  935 KAHKKEIRRAAVNTFGYIAKAIG-------PQD--VLATLLNNLKV-QERQNRVCTTVAIAIVAETCG------------  992 (1172)
T ss_pred             HHHHHHHHHHHHhhhhHHHHhcC-------HHH--HHHHHHhcchH-HHHHhchhhhhhhhhhhhhcC------------
Confidence            88899999999999999885421       001  44555444433 111222222223322222110            


Q ss_pred             hhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          448 RAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       448 ~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                        ...++|.|.+=-+.++.+|+.....+++.+-.--...+.+.+-     .+.|.|.+-+.|.++--+.-|..++.+++=
T Consensus       993 --pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy-----av~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen  993 --PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY-----AVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred             --chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH-----HhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence              1456688888778899999998888887665200011111111     245777777777777666668888887753

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=4e-06  Score=85.23  Aligned_cols=329  Identities=17%  Similarity=0.121  Sum_probs=200.7

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHH
Q 009514          106 CIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFE  184 (533)
Q Consensus       106 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~  184 (533)
                      ++-+...++.+.||..|+.++-.++...++. +     ...+..+-.||.|. +-+--.|..+.....-+.-+     .-
T Consensus       147 AIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~-k-----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld-----LI  215 (968)
T KOG1060|consen  147 AIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ-K-----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD-----LI  215 (968)
T ss_pred             HHHHHhcCCcHHHHHHHHHhhHHHhcCChhh-H-----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH-----Hh
Confidence            3445778899999999999999999876542 1     24566666777764 44444555555544433222     12


Q ss_pred             cCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc---chhh---------------------hHhhhhhc----hHHHHH
Q 009514          185 VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK---LECC---------------------RSRCLSLQ----VLKLVV  236 (533)
Q Consensus       185 ~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~---~~~~---------------------~~~~~~~~----~l~~l~  236 (533)
                      ++-..+++++|.+- .+|. +...+..|...|..   +|..                     +.-.....    .+...-
T Consensus       216 HknyrklC~ll~dv-deWg-QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stk  293 (968)
T KOG1060|consen  216 HKNYRKLCRLLPDV-DEWG-QVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTK  293 (968)
T ss_pred             hHHHHHHHhhccch-hhhh-HHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhcc
Confidence            34466777777654 2343 33344444444331   1100                     00001011    233344


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH----H---
Q 009514          237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR----S---  309 (533)
Q Consensus       237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~----~---  309 (533)
                      .+|.+.++.|..+++.+.+.++-..        ...+++++|+.+|++ +.++|+..+..|..++...+...    +   
T Consensus       294 pLl~S~n~sVVmA~aql~y~lAP~~--------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf  364 (968)
T KOG1060|consen  294 PLLQSRNPSVVMAVAQLFYHLAPKN--------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFF  364 (968)
T ss_pred             HHHhcCCcHHHHHHHhHHHhhCCHH--------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceE
Confidence            4667889999999999999997541        234678899998874 45666666666666554322110    0   


Q ss_pred             ---------H---------HHHhC----cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh
Q 009514          310 ---------T---------FIRLG----GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI  367 (533)
Q Consensus       310 ---------~---------~~~~~----~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL  367 (533)
                               .         +..+.    +++.+-.+.++.+..+...++.+++.++....      -+....+..|+.++
T Consensus       365 v~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~------sv~~tCL~gLv~Ll  438 (968)
T KOG1060|consen  365 VRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG------SVTDTCLNGLVQLL  438 (968)
T ss_pred             eecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC------chhhHHHHHHHHHH
Confidence                     0         11112    23333344556665677777777777654221      13345678899999


Q ss_pred             CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhH
Q 009514          368 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL  447 (533)
Q Consensus       368 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  447 (533)
                      ++.+..|...++..++.|...+|..-..       ++..|.+++.+..-+.-+...+|.++..+..    ...+.     
T Consensus       439 sshde~Vv~eaV~vIk~Llq~~p~~h~~-------ii~~La~lldti~vp~ARA~IiWLige~~e~----vpri~-----  502 (968)
T KOG1060|consen  439 SSHDELVVAEAVVVIKRLLQKDPAEHLE-------ILFQLARLLDTILVPAARAGIIWLIGEYCEI----VPRIA-----  502 (968)
T ss_pred             hcccchhHHHHHHHHHHHHhhChHHHHH-------HHHHHHHHhhhhhhhhhhceeeeeehhhhhh----cchhc-----
Confidence            9999999999999999999887643221       5566667776645567777788888766542    22222     


Q ss_pred             hhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          448 RAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       448 ~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                         .+++..+++-+.+....+|.+.......+--
T Consensus       503 ---PDVLR~laksFs~E~~evKlQILnL~aKLyl  533 (968)
T KOG1060|consen  503 ---PDVLRKLAKSFSDEGDEVKLQILNLSAKLYL  533 (968)
T ss_pred             ---hHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence               3566777777888888888888777766654

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.8e-07  Score=87.50  Aligned_cols=187  Identities=16%  Similarity=0.089  Sum_probs=149.4

Q ss_pred             CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHH
Q 009514          114 RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY  192 (533)
Q Consensus       114 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  192 (533)
                      .++.-+..|..-|..+...-++  ...+...|+.++++..+.+ +..+|..|+++++..+.+++..+..+++.|++++|+
T Consensus        95 ~~le~ke~ald~Le~lve~iDn--Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDN--ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhh--HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            4556677777777777765543  3346777888888888884 578999999999999999999999999999999999


Q ss_pred             HhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC--CCHHHHHHHHHHHHHHhhccccccchhhh
Q 009514          193 NHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLSAGSFM  270 (533)
Q Consensus       193 ~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~~~  270 (533)
                      ..|..+ .+...+..|+.|++++-.+.+.....+...++...|...+++  .+..++..++..+..+.......+.. +-
T Consensus       173 ~~ls~~-~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~-~~  250 (342)
T KOG2160|consen  173 KILSSD-DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI-AS  250 (342)
T ss_pred             HHHccC-CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH-HH
Confidence            988855 456788999999999999988888889999999999999998  56788889999999987663333322 34


Q ss_pred             hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 009514          271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF  304 (533)
Q Consensus       271 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~  304 (533)
                      ..++...++.+....+.++.+.+..++..+....
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~  284 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSEL  284 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence            5566666777777778889999988887776543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.84  E-value=1e-05  Score=83.99  Aligned_cols=480  Identities=15%  Similarity=0.172  Sum_probs=260.8

Q ss_pred             cccchHHHHhhhcCCCcchhHHHHHHHHHhhcC-chhH-HHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChhhh
Q 009514           15 QEENMEFLLSLLNNESENVSGLGASIISHSCKT-SLEQ-KLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVV   92 (533)
Q Consensus        15 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~-~~~~-~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~   92 (533)
                      +..++..|+++|++.+.+||..|+++++-+++. .+++ +.+++.    ..-.++.+-.+.|.-+--.|..+..+-+...
T Consensus        45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~----L~~~~~s~keq~rdissi~Lktvi~nl~P~~  120 (1233)
T KOG1824|consen   45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVEN----LCSNMLSGKEQLRDISSIGLKTVIANLPPSS  120 (1233)
T ss_pred             hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHH----HhhhhccchhhhccHHHHHHHHHHhcCCCcc
Confidence            356889999999999999999999999987743 2222 122221    2222344444455544444444332222111


Q ss_pred             hhhccccCcccHHHHHHHHh------cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHH
Q 009514           93 SQFVGPDTGRTLSCIIEIVK------DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEAS  165 (533)
Q Consensus        93 ~~~~~~~~~~~i~~l~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~  165 (533)
                      ..+.   .....+.+...++      .+...++..++..+..+...-.. ... ....+.+..++.-+..+ ..++.+++
T Consensus       121 ~~~l---a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~-ll~-~fh~~il~~l~~ql~s~R~aVrKkai  195 (1233)
T KOG1824|consen  121 SSFL---AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT-LLP-NFHLSILKCLLPQLQSPRLAVRKKAI  195 (1233)
T ss_pred             cccc---ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc-cCc-chHHHHHHHHhhcccChHHHHHHHHH
Confidence            1111   1234444444332      23334777776666654322111 111 12345555555555533 46789999


Q ss_pred             HHHHhhhcCCHH-HHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh--hchHHHHHHhc---
Q 009514          166 FAFSSLIAEKED-MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDAL---  239 (533)
Q Consensus       166 ~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~l~~~L---  239 (533)
                      .+|+.++..... ...     +.+..|.+-|.++.. +......+.+|+.++...   ...+-.  ...+|.+.++.   
T Consensus       196 ~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q-~~~~rt~Iq~l~~i~r~a---g~r~~~h~~~ivp~v~~y~~~~  266 (1233)
T KOG1824|consen  196 TALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQ-MSATRTYIQCLAAICRQA---GHRFGSHLDKIVPLVADYCNKI  266 (1233)
T ss_pred             HHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCc-hHHHHHHHHHHHHHHHHh---cchhhcccchhhHHHHHHhccc
Confidence            999999854432 111     334556666665532 222233445566665421   112222  24789999998   


Q ss_pred             CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CC---------------------------------
Q 009514          240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DT---------------------------------  285 (533)
Q Consensus       240 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~---------------------------------  285 (533)
                      +..+.++|+....++..+-+.++..--.  ....++..+++.+. +|                                 
T Consensus       267 e~~dDELrE~~lQale~fl~rcp~ei~p--~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~  344 (1233)
T KOG1824|consen  267 EEDDDELREYCLQALESFLRRCPKEILP--HVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDM  344 (1233)
T ss_pred             ccCcHHHHHHHHHHHHHHHHhChhhhcc--cchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccch
Confidence            6778899999999998876543321000  11122222222221 11                                 


Q ss_pred             CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh--------HhHH-----
Q 009514          286 STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED--------KCKE-----  352 (533)
Q Consensus       286 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~--------~~~~-----  352 (533)
                      ++.||.+|+.++..+.....+.-..+.+ ..-|.++.-.+...+.++.....+...+..+..+        +..+     
T Consensus       345 SWkVRRaAaKcl~a~IsSR~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~  423 (1233)
T KOG1824|consen  345 SWKVRRAAAKCLEAVISSRLEMLPDFYQ-TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTP  423 (1233)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCc
Confidence            2589999999998887655554444443 3447777777777777777777776666543221        1111     


Q ss_pred             ----HHHHh--hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC-CchhHHHHHHH
Q 009514          353 ----EIFME--LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMY  425 (533)
Q Consensus       353 ----~i~~~--~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~  425 (533)
                          .+.+.  ..+..+.+.+++.+.+.+..++..|+.+....|+..   .++.+.+++-+...|.+- .....+..++.
T Consensus       424 s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l---~~~~~slvpgI~~~l~DkSsss~~ki~~L~  500 (1233)
T KOG1824|consen  424 SDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGAL---AQHIPSLVPGIIYSLNDKSSSSNLKIDALV  500 (1233)
T ss_pred             cchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchh---hhcccccchhhhhhcCCccchHHHHHHHHH
Confidence                11111  134455556666777777788888888876655422   122222555555556542 23445555555


Q ss_pred             HHHHh-ccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC---CCCC----CcHHHHHHHHHC
Q 009514          426 VLGNV-ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC---SSSP----GSSGRLVKLHDA  497 (533)
Q Consensus       426 ~L~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~---~~~~----~~~~~~~~l~~~  497 (533)
                      .+.+. ....++..+..+        .-..|.++....++-+.+-.+|......+..   +...    +.......+.  
T Consensus       501 fl~~~L~s~~p~~fhp~~--------~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~--  570 (1233)
T KOG1824|consen  501 FLYSALISHPPEVFHPHL--------SALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY--  570 (1233)
T ss_pred             HHHHHHhcCChhhcccch--------hhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH--
Confidence            55444 444443333333        3455677777777878888887777666652   2111    1122222222  


Q ss_pred             CcHHHHHhhh-cCCCCcHHHHHHHHHHHH-hhhcc
Q 009514          498 GIVSHVKNMV-NDPCLDVKLRVKTALEQF-NSFDD  530 (533)
Q Consensus       498 g~~~~L~~ll-~~~~~~v~~~a~~aL~~~-~~~~~  530 (533)
                        --.+.++- +|.+.+||++|..+.+++ ..|+|
T Consensus       571 --~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD  603 (1233)
T KOG1824|consen  571 --DCTLQRLKATDSDQEVKERAISCMGQIIANFGD  603 (1233)
T ss_pred             --HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh
Confidence              12344443 567889999999998877 44444

>TIGR02270 conserved hypothetical protein

Probab=98.83  E-value=1.8e-06  Score=85.37  Aligned_cols=242  Identities=18%  Similarity=0.088  Sum_probs=166.6

Q ss_pred             CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc
Q 009514          186 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       186 ~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      .+++.++..|... .++.++..++.++..  .+++.         .+..+++.|.+.++.|+..++.+|+.+        
T Consensus        54 ~a~~~L~~aL~~d-~~~ev~~~aa~al~~--~~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i--------  113 (410)
T TIGR02270        54 AATELLVSALAEA-DEPGRVACAALALLA--QEDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWL--------  113 (410)
T ss_pred             hHHHHHHHHHhhC-CChhHHHHHHHHHhc--cCChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcC--------
Confidence            3467788877543 235555555444432  12211         378899999999999999999998543        


Q ss_pred             chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 009514          266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL  345 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~  345 (533)
                          ...+..+.|..+|+++++.++..++.+++..-            ....+.+..+++++++.++..|+++|+.+-..
T Consensus       114 ----~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       114 ----GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR  177 (410)
T ss_pred             ----CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence                34466788999999999999999998886622            23456788889999999999999999988542


Q ss_pred             CChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHH
Q 009514          346 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY  425 (533)
Q Consensus       346 ~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~  425 (533)
                      .            ..+.|...+.+.++.|+..|++.+..+-.  +.           .+..+...... +..........
T Consensus       178 ~------------a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~-----------A~~~l~~~~~~-~g~~~~~~l~~  231 (410)
T TIGR02270       178 L------------SESTLRLYLRDSDPEVRFAALEAGLLAGS--RL-----------AWGVCRRFQVL-EGGPHRQRLLV  231 (410)
T ss_pred             c------------chHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh-----------HHHHHHHHHhc-cCccHHHHHHH
Confidence            1            35667778999999999999999977643  22           33333332222 23333333333


Q ss_pred             HHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHh
Q 009514          426 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN  505 (533)
Q Consensus       426 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~  505 (533)
                      ++...  +.                ...++.|..++++++  ++..++++++.+..               -..++.|++
T Consensus       232 ~lal~--~~----------------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~---------------p~av~~L~~  276 (410)
T TIGR02270       232 LLAVA--GG----------------PDAQAWLRELLQAAA--TRREALRAVGLVGD---------------VEAAPWCLE  276 (410)
T ss_pred             HHHhC--Cc----------------hhHHHHHHHHhcChh--hHHHHHHHHHHcCC---------------cchHHHHHH
Confidence            33322  22                123467888888765  89999999998884               235788999


Q ss_pred             hhcCCCCcHHHHHHHHHHHHh
Q 009514          506 MVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       506 ll~~~~~~v~~~a~~aL~~~~  526 (533)
                      .+++  +.+++.|.+++..|.
T Consensus       277 ~l~d--~~~aR~A~eA~~~It  295 (410)
T TIGR02270       277 AMRE--PPWARLAGEAFSLIT  295 (410)
T ss_pred             HhcC--cHHHHHHHHHHHHhh
Confidence            8874  348889999998874

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1.8e-05  Score=80.69  Aligned_cols=334  Identities=12%  Similarity=0.138  Sum_probs=231.6

Q ss_pred             ccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-C--CCchhhhHHHHHHhhhcCCH-
Q 009514          102 RTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D--PGRVGDEASFAFSSLIAEKE-  176 (533)
Q Consensus       102 ~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~--~~~~~~~a~~~L~~l~~~~~-  176 (533)
                      ..|+.++.-.. +.-++-|..|++.|..+++.    .+. .+...++++|++.|. |  ++++...+...+.++...++ 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk----YR~-~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----YRE-EVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----HHH-HHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            45666666544 34567799999999999883    343 345567899999998 3  35666777777777765442 


Q ss_pred             -------H----HH----HHHH-HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc-chhhhHhhhhh-chHHHHHHh
Q 009514          177 -------D----MQ----KLAF-EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-LECCRSRCLSL-QVLKLVVDA  238 (533)
Q Consensus       177 -------~----~~----~~~~-~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~-~~l~~l~~~  238 (533)
                             .    ..    ..++ ..+-+..++..+...  +-.+|.+++..|.++... ..+.++.+... .++..++.+
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence                   1    11    1122 245677788877654  467899999999988764 34566666554 589999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 009514          239 LAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRSTFIRL  314 (533)
Q Consensus       239 L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~~~~  314 (533)
                      |.+....+|-.+.-.|..+++..+...+- +.-+.+.+.|+.+++.+    .--|...|...|-||..++..++..+.+.
T Consensus       175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKl-VAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~  253 (970)
T KOG0946|consen  175 LRDSREPIRNEAILLLSELVKDNSSIQKL-VAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG  253 (970)
T ss_pred             HhhhhhhhchhHHHHHHHHHccCchHHHH-HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence            99999999999999999999986666554 45577888999999632    33678899999999999988999999999


Q ss_pred             CcHHHHHHhhcC---CC--------HHH--HHHHHHHHHHhhccCCh-----HhHHHHHHhhcHHHHHhhhCCC--ChhH
Q 009514          315 GGVKLLVQLSKS---MD--------STI--RLNALRALRNLIFLAED-----KCKEEIFMELTASLLASLICDP--EPSV  374 (533)
Q Consensus       315 ~~i~~L~~ll~~---~~--------~~~--~~~al~aL~~l~~~~~~-----~~~~~i~~~~~~~~l~~lL~~~--~~~v  374 (533)
                      +-||.|.+++.-   .+        ..+  ...++.++..++....+     .++..+...+++..|..++.++  ..+|
T Consensus       254 ~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI  333 (970)
T KOG0946|consen  254 SYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI  333 (970)
T ss_pred             ccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH
Confidence            999999988753   12        111  22355555665542211     2445677788899999988876  4689


Q ss_pred             HHHHHHHHHHhhcCCcchHHHHHhh----cC----chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHH
Q 009514          375 QEQALALVRNLVDGRINSVEYIFAE----DG----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMD  443 (533)
Q Consensus       375 ~~~a~~~L~~l~~~~~~~~~~i~~~----~~----~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  443 (533)
                      +..++.+++++..++......+.+.    ..    .++-.+..+..+......+.++++++-.+...+.+....++.
T Consensus       334 ltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~  410 (970)
T KOG0946|consen  334 LTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLK  410 (970)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            9999999999998865433333221    11    133334444444345678888889888887766554444444

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.81  E-value=3.9e-05  Score=75.60  Aligned_cols=402  Identities=15%  Similarity=0.143  Sum_probs=195.3

Q ss_pred             HHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHH-HHHhcCChhhHHHHHHHHHHhhhcCCCcch
Q 009514           62 RLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCII-EIVKDRFARTRLLASLCLIVIRNASPCYLQ  138 (533)
Q Consensus        62 ~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  138 (533)
                      .++.-+.+  ++.++-.|++.|..+...+...           .+..++ ..+-++.+.++.+|+..-+.+...+....+
T Consensus       105 siMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~-----------~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~  173 (898)
T COG5240         105 SIMKDLNGGVPDDVKPMAIRSLFSVIDGETVY-----------DFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTK  173 (898)
T ss_pred             HHHHhhccCCccccccHHHHHHHHhcCcchhh-----------hHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHH
Confidence            44444543  3477888888887765432111           111121 133356666777776666666554321110


Q ss_pred             hhh-hHhhhHHHHHHh------cC-CC---CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHH-
Q 009514          139 DVG-IKTKLINNLLEL------LD-DP---GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFE-  206 (533)
Q Consensus       139 ~~~-~~~~~i~~L~~l------l~-~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~-  206 (533)
                      ... -.+.++--+-+.      .+ .+   +-.+..|.+.|..+-..+.-         +.-++++.+..+. .-.-+. 
T Consensus       174 rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkm---------a~lklv~hf~~n~-smknq~a  243 (898)
T COG5240         174 RWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKM---------AQLKLVEHFRGNA-SMKNQLA  243 (898)
T ss_pred             HHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHH---------HHHHHHHHhhccc-ccccchh
Confidence            000 001111111111      11 11   12367788888776544322         2345666565442 111111 


Q ss_pred             --HHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC
Q 009514          207 --GILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD  284 (533)
Q Consensus       207 --~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~  284 (533)
                        ..+++...+...++..+.     ...|.|-..+++....|...++++++.++..  +.... ++ ...+..|-.+|.+
T Consensus       244 ~V~lvr~~~~ll~~n~q~~~-----q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~--nv~~~-~~-~~~vs~L~~fL~s  314 (898)
T COG5240         244 GVLLVRATVELLKENSQALL-----QLRPFLNSWLSDKFEMVFLEAARAVCALSEE--NVGSQ-FV-DQTVSSLRTFLKS  314 (898)
T ss_pred             heehHHHHHHHHHhChHHHH-----HHHHHHHHHhcCcchhhhHHHHHHHHHHHHh--ccCHH-HH-HHHHHHHHHHHhc
Confidence              223333444333333322     3567777788888899999999999998764  22212 22 2455667777888


Q ss_pred             CCHHHHHHHHHHHHHHhcCCchhH-------HHH----------------HHhC---cHHHHH----HhhcCCCHHHHHH
Q 009514          285 TSTAVQVAALGAISNIVVDFTTRR-------STF----------------IRLG---GVKLLV----QLSKSMDSTIRLN  334 (533)
Q Consensus       285 ~~~~v~~~a~~aL~nl~~~~~~~~-------~~~----------------~~~~---~i~~L~----~ll~~~~~~~~~~  334 (533)
                      +....|-+|...|..++..++...       +.+                ++.|   -+..|+    .++++-++..+.-
T Consensus       315 ~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI  394 (898)
T COG5240         315 TRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKII  394 (898)
T ss_pred             chHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEE
Confidence            889999999999999987554311       111                1111   111111    1112212222222


Q ss_pred             HHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh-CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514          335 ALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI  413 (533)
Q Consensus       335 al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~  413 (533)
                      ++.++..|+..-+. -+.     ..+..|...| +.+..+.+..++.++..+....|+..+.       +++.|...+.+
T Consensus       395 ~ida~rsLsl~Fp~-k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-------aLe~LC~fIED  461 (898)
T COG5240         395 AIDALRSLSLLFPS-KKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-------ALEVLCTFIED  461 (898)
T ss_pred             eHHHHHHHHhhCcH-HHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-------HHHHHHHHHhh
Confidence            22222222221110 000     0112222211 2233444444444444444444432222       22333333333


Q ss_pred             CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514          414 ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK  493 (533)
Q Consensus       414 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  493 (533)
                      +.-+++....+.+|+.=.-..+..             ..++.++.+-+--.+..+|.+|+.||+.++.+..+...     
T Consensus       462 cey~~I~vrIL~iLG~EgP~a~~P-------------~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~-----  523 (898)
T COG5240         462 CEYHQITVRILGILGREGPRAKTP-------------GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS-----  523 (898)
T ss_pred             cchhHHHHHHHHHhcccCCCCCCc-------------chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc-----
Confidence            222333333333332211100000             12334444444446778999999999999975433322     


Q ss_pred             HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                        -..+...|.+.++|.+.+||++|..+|.++.
T Consensus       524 --~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         524 --PQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             --HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence              2234557888899999999999999999886

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=1.2e-05  Score=84.63  Aligned_cols=232  Identities=17%  Similarity=0.153  Sum_probs=143.4

Q ss_pred             cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC-chhhhHHHHHHhhhcCCHHHH
Q 009514          101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLIAEKEDMQ  179 (533)
Q Consensus       101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~a~~~L~~l~~~~~~~~  179 (533)
                      ...++.+..+..+....||.+|...+..+.......  + -......+.+++..++.. .++.........+...-..  
T Consensus       275 s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~--~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--  349 (759)
T KOG0211|consen  275 SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD--D-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--  349 (759)
T ss_pred             hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc--h-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--
Confidence            345666777888888899999999999887754321  1 344567888888887653 3444444333333211110  


Q ss_pred             HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc-chhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009514          180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS  258 (533)
Q Consensus       180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls  258 (533)
                       ....-...++...++...  .++.+..+..-...++.. +.+.+..+.....+|.+-.+..+.+..++.+.+..+..++
T Consensus       350 -~~~~~~~~~~~~~l~~~~--~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~  426 (759)
T KOG0211|consen  350 -SATRTQLVPPVSNLLKDE--EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLS  426 (759)
T ss_pred             -ccCcccchhhHHHHhcch--hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccC
Confidence             000112245555545443  244444444433344332 1223344555667898888889999999998888877775


Q ss_pred             hccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514          259 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA  338 (533)
Q Consensus       259 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a  338 (533)
                      -..+..+    .-....|.+...+++.+++|+....+.+..+-...+..-........++.+..+.......+|.+.++.
T Consensus       427 p~~~k~~----ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~  502 (759)
T KOG0211|consen  427 PILPKER----TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEY  502 (759)
T ss_pred             ccCCcCc----CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHH
Confidence            4433211    224567778888999999999999988766654443333344555667777777776667778877777


Q ss_pred             HHHhhc
Q 009514          339 LRNLIF  344 (533)
Q Consensus       339 L~~l~~  344 (533)
                      +-.++.
T Consensus       503 ip~la~  508 (759)
T KOG0211|consen  503 IPQLAL  508 (759)
T ss_pred             HHHHHH
Confidence            766654

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.73  E-value=1.3e-05  Score=76.26  Aligned_cols=279  Identities=15%  Similarity=0.156  Sum_probs=184.6

Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhc-hHHHHHHhcCC-CCHHHHHHHHHHHHHHhhcccccc
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~-~l~~l~~~L~~-~~~~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      -+.++.+|...+  +-+.+...+.++.++...... ....+.. ....+-..+++ .+++-...+++||..+.+. +..|
T Consensus       116 ~~~fl~ll~r~d--~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR  191 (442)
T KOG2759|consen  116 WLSFLNLLNRQD--TFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYR  191 (442)
T ss_pred             hHHHHHHHhcCC--hHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchh
Confidence            467788777653  556676888888877643221 1111111 22334444554 5777888899999999887 5566


Q ss_pred             chhhhhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 009514          266 AGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNL  342 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l  342 (533)
                      .. +..+.++..++..+.  ..+-.+|+..+.++.-|+.+ +...+.+...+.|+.|..+++.. .+.|-+-.+.++.|+
T Consensus       192 ~~-~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl  269 (442)
T KOG2759|consen  192 YA-FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL  269 (442)
T ss_pred             he-eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66 788889999999883  35788999999999999864 45556777789999999999864 467777888899999


Q ss_pred             hccCC-hHhHH----HHHHhhcHHHHHhhhC---CCChhHHHHHHH---------------------HHHHhhcCCcch-
Q 009514          343 IFLAE-DKCKE----EIFMELTASLLASLIC---DPEPSVQEQALA---------------------LVRNLVDGRINS-  392 (533)
Q Consensus       343 ~~~~~-~~~~~----~i~~~~~~~~l~~lL~---~~~~~v~~~a~~---------------------~L~~l~~~~~~~-  392 (533)
                      +...+ .+.++    .++..+ ++.-++.|.   -+|+++....-.                     ......+.+|.+ 
T Consensus       270 l~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk  348 (442)
T KOG2759|consen  270 LDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHK  348 (442)
T ss_pred             hccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccc
Confidence            87442 12333    233333 333334442   123333222111                     111111222211 


Q ss_pred             HHHHHhhc-------C-chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC
Q 009514          393 VEYIFAED-------G-IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN  464 (533)
Q Consensus       393 ~~~i~~~~-------~-~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~  464 (533)
                      -+.++.+.       . .++..|.++|+.+.+|.+-.-||+-|+.+....|..+. ++++      .|+-..++++++++
T Consensus       349 ~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k------~ggKe~vM~Llnh~  421 (442)
T KOG2759|consen  349 SEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEK------YGGKERVMNLLNHE  421 (442)
T ss_pred             ccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHH------hchHHHHHHHhcCC
Confidence            11222221       1 27888999999978899999999999999987776544 4553      78889999999999


Q ss_pred             ChhHHHHHHHHHHhhc
Q 009514          465 DSRLRTAAVWAVLNLT  480 (533)
Q Consensus       465 ~~~v~~~a~~~L~~l~  480 (533)
                      |++||.+|..|+..+.
T Consensus       422 d~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  422 DPEVRYHALLAVQKLM  437 (442)
T ss_pred             CchHHHHHHHHHHHHH
Confidence            9999999999988776

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.70  E-value=2.4e-06  Score=82.64  Aligned_cols=215  Identities=15%  Similarity=0.163  Sum_probs=147.0

Q ss_pred             cCChhhHHHHHHHHHHhhhcCCCcchhhhhH------hhhHHHHHHhcC-CCCchhhhHHHHHHhhhcCCHHHHHHHHHc
Q 009514          113 DRFARTRLLASLCLIVIRNASPCYLQDVGIK------TKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEV  185 (533)
Q Consensus       113 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~~i~~L~~ll~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (533)
                      +.+.++.......+..+....+.. .+.+..      .....+++++++ ++..++..++.+++.+....+....... .
T Consensus        68 ~~~~d~v~yvL~li~dll~~~~~~-~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~  145 (312)
T PF03224_consen   68 SSNDDTVQYVLTLIDDLLSDDPSR-VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-K  145 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHH-SSSS-HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-H
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-H
Confidence            457788888888888888877642 333332      225778888887 4556789999999999876554333211 3


Q ss_pred             CcHHHHHHhhhcCCC--CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc------C-CCCHHHHHHHHHHHHH
Q 009514          186 NGVDKLYNHLQKGSL--HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL------A-HDSSDVRSAACMCLRS  256 (533)
Q Consensus       186 ~~l~~L~~~L~~~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L------~-~~~~~v~~~a~~~L~~  256 (533)
                      +.++.++++|.+...  +...+..++.+|.++.. .+.+|..+.+.++++.+.+.+      + ..+..+++.++-|++.
T Consensus       146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl  224 (312)
T PF03224_consen  146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL  224 (312)
T ss_dssp             HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Confidence            557888888776321  23355888999999985 578999999999999999999      2 2356899999999999


Q ss_pred             HhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCch-hHHHHHHhCcHHHHHHhhcC--CCHHHH
Q 009514          257 VSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT-RRSTFIRLGGVKLLVQLSKS--MDSTIR  332 (533)
Q Consensus       257 ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~-~~~~~~~~~~i~~L~~ll~~--~~~~~~  332 (533)
                      |+.+.+ .... +...+.++.|+++++ ...+++..-+..++.|+...... +...++..|+++.+-.+...  +|+++.
T Consensus       225 LSF~~~-~~~~-~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~  302 (312)
T PF03224_consen  225 LSFEPE-IAEE-LNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLT  302 (312)
T ss_dssp             HTTSHH-HHHH-HHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHH
T ss_pred             HhcCHH-HHHH-HhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHH
Confidence            999843 3333 567789999999997 56889999999999999975543 66777877766666555544  355543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.70  E-value=1.8e-06  Score=83.49  Aligned_cols=208  Identities=21%  Similarity=0.232  Sum_probs=143.9

Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh------chHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL------QVLKLVVDALAHDSSDVRSAACMCLRSVSRSI  261 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~------~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~  261 (533)
                      ...++++|...+.++++..+.+..+..+..+++...+.+...      ....+++++++.+++-++..|+..|..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            445556555442357788999999999988777555555542      25788888999999999999999999997653


Q ss_pred             ccccchhhhhcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh-----cC--CCHH
Q 009514          262 KNLSAGSFMNETIVIPLVRLLDD----TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS-----KS--MDST  330 (533)
Q Consensus       262 ~~~~~~~~~~~~~i~~Lv~lL~~----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll-----~~--~~~~  330 (533)
                      +.....  ...+.++.+++++.+    ++.+++..|+.+|.++.. .+..+..+.+.|+++.+..++     .+  .+..
T Consensus       137 ~~~~~~--~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q  213 (312)
T PF03224_consen  137 PKRSEK--LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ  213 (312)
T ss_dssp             TT--HH--HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred             Cccccc--hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence            322211  124678888888864    456788999999999995 678888999999999999998     22  2355


Q ss_pred             HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcc-hHHHHHhhc
Q 009514          331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLVDGRIN-SVEYIFAED  400 (533)
Q Consensus       331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~~  400 (533)
                      ++.+++.++.-++.  +++..+.+...+.++.++++++ ...++|..-++.+++|+....++ ....++..+
T Consensus       214 l~Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~  283 (312)
T PF03224_consen  214 LQYQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCG  283 (312)
T ss_dssp             HHHHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHcc
Confidence            77788888888876  4567777888888899999886 56789999999999999987665 444555544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=0.00012  Score=74.79  Aligned_cols=390  Identities=15%  Similarity=0.175  Sum_probs=216.5

Q ss_pred             hHHHHhhhcCCCcchhHHHHH-HHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514           19 MEFLLSLLNNESENVSGLGAS-IISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV   96 (533)
Q Consensus        19 i~~L~~lL~~~~~~v~~~a~~-~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~   96 (533)
                      -..|..||+|..+.-+.-|.+ +|+-+++..+-      ....|..++-..+ +..++.-.---|-+-++.+|+..  + 
T Consensus        37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--L-  107 (968)
T KOG1060|consen   37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--L-  107 (968)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--e-
Confidence            367888999877666555555 66677755442      2245566666654 66676665444555577766652  1 


Q ss_pred             cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCC
Q 009514           97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEK  175 (533)
Q Consensus        97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~  175 (533)
                           -.|..+-+-++++++-+|..|.+.|..+-.        .++..-++-.+-+...|. +.+|..|+.++-++-.-+
T Consensus       108 -----LSIntfQk~L~DpN~LiRasALRvlSsIRv--------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd  174 (968)
T KOG1060|consen  108 -----LSINTFQKALKDPNQLIRASALRVLSSIRV--------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD  174 (968)
T ss_pred             -----eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC
Confidence                 246677889999999999999988775322        121111222222333453 578999999999997777


Q ss_pred             HHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHH
Q 009514          176 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR  255 (533)
Q Consensus       176 ~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~  255 (533)
                      ++....+     +..+-.+|.+.  ++.+.-.|+.++...|-+.   -+.+  ++-...+-++|-+-+.=-|.-....|.
T Consensus       175 ~e~k~qL-----~e~I~~LLaD~--splVvgsAv~AF~evCPer---ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~  242 (968)
T KOG1060|consen  175 PEQKDQL-----EEVIKKLLADR--SPLVVGSAVMAFEEVCPER---LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLT  242 (968)
T ss_pred             hhhHHHH-----HHHHHHHhcCC--CCcchhHHHHHHHHhchhH---HHHh--hHHHHHHHhhccchhhhhHHHHHHHHH
Confidence            6654322     23344445454  3677778888888777422   1111  223344444554433323333444444


Q ss_pred             HHhhcc-ccc-c---------------c------hhhhhcCcHHHHH----HhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514          256 SVSRSI-KNL-S---------------A------GSFMNETIVIPLV----RLLDDTSTAVQVAALGAISNIVVDFTTRR  308 (533)
Q Consensus       256 ~ls~~~-~~~-~---------------~------~~~~~~~~i~~Lv----~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  308 (533)
                      ..++.. ... .               .      ..+....-+..|+    .++.+.++.|..+++.+...++-  .. +
T Consensus       243 RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP--~~-~  319 (968)
T KOG1060|consen  243 RYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP--KN-Q  319 (968)
T ss_pred             HHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC--HH-H
Confidence            444431 000 0               0      0000001112222    34557788999999999999883  22 1


Q ss_pred             HHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh-hCCCC-hhHHHHHHHHHHHhh
Q 009514          309 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPE-PSVQEQALALVRNLV  386 (533)
Q Consensus       309 ~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-L~~~~-~~v~~~a~~~L~~l~  386 (533)
                          ...++++|+++|.+. ..+|...+..+..++....     .    ...+.+-.+ +.++| ..+...=+.+|.+++
T Consensus       320 ----~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~-----~----lF~P~lKsFfv~ssDp~~vk~lKleiLs~La  385 (968)
T KOG1060|consen  320 ----VTKIAKALVRLLRSN-REVQYVVLQNIATISIKRP-----T----LFEPHLKSFFVRSSDPTQVKILKLEILSNLA  385 (968)
T ss_pred             ----HHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcch-----h----hhhhhhhceEeecCCHHHHHHHHHHHHHHHh
Confidence                134578899988754 4556666666666654221     1    112233222 22333 334445556667766


Q ss_pred             cCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh
Q 009514          387 DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS  466 (533)
Q Consensus       387 ~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~  466 (533)
                      ...  .+..+       ++-+...+.+ .+.++...+..+|+.++...-...+.++            .-|+.++++.+.
T Consensus       386 ~es--ni~~I-------LrE~q~YI~s-~d~~faa~aV~AiGrCA~~~~sv~~tCL------------~gLv~Llsshde  443 (968)
T KOG1060|consen  386 NES--NISEI-------LRELQTYIKS-SDRSFAAAAVKAIGRCASRIGSVTDTCL------------NGLVQLLSSHDE  443 (968)
T ss_pred             hhc--cHHHH-------HHHHHHHHhc-CchhHHHHHHHHHHHHHHhhCchhhHHH------------HHHHHHHhcccc
Confidence            432  22222       2333333444 3335666677777777664444444444            346677777777


Q ss_pred             hHHHHHHHHHHhhcC
Q 009514          467 RLRTAAVWAVLNLTC  481 (533)
Q Consensus       467 ~v~~~a~~~L~~l~~  481 (533)
                      .|-.+++..|-.|..
T Consensus       444 ~Vv~eaV~vIk~Llq  458 (968)
T KOG1060|consen  444 LVVAEAVVVIKRLLQ  458 (968)
T ss_pred             hhHHHHHHHHHHHHh
Confidence            777777777777774

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.65  E-value=1e-05  Score=77.07  Aligned_cols=320  Identities=13%  Similarity=0.155  Sum_probs=206.6

Q ss_pred             ccchHHHHhhhcCC-CcchhHHHHHHHHHhhcCchhHHHHHhc-------CchHHHHHhhcC-ChHHHHHHHHHHHHHhc
Q 009514           16 EENMEFLLSLLNNE-SENVSGLGASIISHSCKTSLEQKLLFDA-------GVLKRLTSLLGG-SLIQRDASLESIATIFK   86 (533)
Q Consensus        16 ~~~i~~L~~lL~~~-~~~v~~~a~~~l~~~~~~~~~~~~i~~~-------g~i~~L~~lL~~-~~~v~~~al~aL~~l~~   86 (533)
                      +..+..+++|++.. .++..+.+...+..+-..+..|..+++.       -.-++.+++|.. +.-..+.....++.++.
T Consensus        64 ~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~  143 (442)
T KOG2759|consen   64 AQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC  143 (442)
T ss_pred             HHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence            46778899999854 4677777777777776666555554441       123455666654 55555656677777654


Q ss_pred             CChhhhhhhccccCcccHHHHHHHHhc-CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhc-CC--CCchhh
Q 009514           87 NNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL-DD--PGRVGD  162 (533)
Q Consensus        87 ~~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll-~~--~~~~~~  162 (533)
                      .......--   ...-....+-..+++ .++.....+++||..+....+  .+..++..+++..++..+ +.  +-.++.
T Consensus       144 ~g~~~~~~~---e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e--yR~~~v~adg~~~l~~~l~s~~~~~QlQY  218 (442)
T KOG2759|consen  144 FGNCKMELS---ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE--YRYAFVIADGVSLLIRILASTKCGFQLQY  218 (442)
T ss_pred             hccccccch---HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc--hhheeeecCcchhhHHHHhccCcchhHHH
Confidence            322221100   000012234445555 777888899999999988764  356677788888999888 42  346788


Q ss_pred             hHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch------hhhHhhhhhchHHHHH
Q 009514          163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE------CCRSRCLSLQVLKLVV  236 (533)
Q Consensus       163 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~------~~~~~~~~~~~l~~l~  236 (533)
                      ...+++..|..+..-. +.+...+.++.|.++++.+. -+.+..-++.++.++....+      .....++..++.+. +
T Consensus       219 qsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~-KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~-l  295 (442)
T KOG2759|consen  219 QSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKEST-KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT-L  295 (442)
T ss_pred             HHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH-H
Confidence            8888888887654443 55566788999999888763 34555667778888876543      22223444444444 4


Q ss_pred             HhcCC---CCHHHHHHHHHHHHHH----------------------hhccccccchhh--------h--hcCcHHHHHHh
Q 009514          237 DALAH---DSSDVRSAACMCLRSV----------------------SRSIKNLSAGSF--------M--NETIVIPLVRL  281 (533)
Q Consensus       237 ~~L~~---~~~~v~~~a~~~L~~l----------------------s~~~~~~~~~~~--------~--~~~~i~~Lv~l  281 (533)
                      +.|..   .++++....-..-..|                      .+++.. +..+|        -  ...++..|+++
T Consensus       296 ~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~H-k~e~FW~eNa~rlnennyellkiL~~l  374 (442)
T KOG2759|consen  296 QSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVH-KSEKFWRENADRLNENNYELLKILIKL  374 (442)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccc-cccchHHHhHHHHhhccHHHHHHHHHH
Confidence            44432   2333332222111111                      111100 00011        1  22367889999


Q ss_pred             hc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514          282 LD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       282 L~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~  344 (533)
                      |+ +.||-+...||.=|+.....++..+..+.+.||=..++++++++|+++|-+|+.|+..+..
T Consensus       375 Le~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  375 LETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            97 4579999999999999999999999888889999999999999999999999999987754

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=2e-06  Score=83.76  Aligned_cols=183  Identities=17%  Similarity=0.226  Sum_probs=134.8

Q ss_pred             HHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC
Q 009514          206 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT  285 (533)
Q Consensus       206 ~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~  285 (533)
                      .+++..|..++..-.-.|..+.+..+.+.|+++|+.++..+...+...++|+.-..++++.. |.+.+++..|+.++.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~-fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAG-FLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHH-HHHhhHHHHHHHHhhcc
Confidence            44555666666554556777778889999999999999888888999999998777888877 89999999999999888


Q ss_pred             CHHHHHHHHHHHHHHhcCCchh-HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh--HhHHHHHHh----h
Q 009514          286 STAVQVAALGAISNIVVDFTTR-RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED--KCKEEIFME----L  358 (533)
Q Consensus       286 ~~~v~~~a~~aL~nl~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~--~~~~~i~~~----~  358 (533)
                      |..+|....|.+..+..+.... +-.++...++..++.+.++++-.++...+..|.|++.+...  +.++..+..    -
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            8899999999999999876553 23456678899999999999999999999999999874432  122211111    1


Q ss_pred             cHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514          359 TASLLASLICDPEPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       359 ~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~  389 (533)
                      ....+++-++..+|-..++.+..|.+++..+
T Consensus       566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d  596 (743)
T COG5369         566 LFKRLIDKYEENNPMEILEGCYILVRNAACD  596 (743)
T ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHHhcc
Confidence            2334455555555444444455555555443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.63  E-value=4.6e-06  Score=79.92  Aligned_cols=279  Identities=13%  Similarity=0.120  Sum_probs=189.9

Q ss_pred             hhHhhhhhchHHHHHHhcCCCCH--HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHH
Q 009514          222 CRSRCLSLQVLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAIS  298 (533)
Q Consensus       222 ~~~~~~~~~~l~~l~~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~  298 (533)
                      ..+.+...|++..|++++..++.  .||..+.+.|-.+... .+. .. +...| ...++.+.+ ...++.+...+..|.
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~-d~-va~~~-~~~Il~lAK~~e~~e~aR~~~~il~  247 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENR-DR-VARIG-LGVILNLAKEREPVELARSVAGILE  247 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhh-hH-Hhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence            34556677999999999998865  5699999999877543 222 11 33333 444555544 456789999999999


Q ss_pred             HHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHH
Q 009514          299 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA  378 (533)
Q Consensus       299 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a  378 (533)
                      ++-.++.+..+.++..|++..++-..+..++.+..++..+|+|++.+...+.++.+++....+.|..+-.+.|.-.+-.|
T Consensus       248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A  327 (832)
T KOG3678|consen  248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA  327 (832)
T ss_pred             HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence            99988888788899999999999888988999999999999999988888899999999999999999988888888899


Q ss_pred             HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHH
Q 009514          379 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII  458 (533)
Q Consensus       379 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv  458 (533)
                      |-++.-++.+.  .++..+...| -+.++-.++.+ -+|.....   --...+.|..               .+-++.|+
T Consensus       328 ClAV~vlat~K--E~E~~VrkS~-TlaLVEPlva~-~DP~~FAR---D~hd~aQG~~---------------~d~LqRLv  385 (832)
T KOG3678|consen  328 CLAVAVLATNK--EVEREVRKSG-TLALVEPLVAS-LDPGRFAR---DAHDYAQGRG---------------PDDLQRLV  385 (832)
T ss_pred             HHHHhhhhhhh--hhhHHHhhcc-chhhhhhhhhc-cCcchhhh---hhhhhhccCC---------------hHHHHHhh
Confidence            98888887653  2333333333 22222222333 22221111   1112222211               23446788


Q ss_pred             HhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhh
Q 009514          459 KFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  528 (533)
Q Consensus       459 ~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~  528 (533)
                      -+|++...+.+.-+++-++-=+..+  .-......+.+-|++..|.++..++++--...|..||.-+-+.
T Consensus       386 PlLdS~R~EAq~i~AF~l~~EAaIK--s~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE  453 (832)
T KOG3678|consen  386 PLLDSNRLEAQCIGAFYLCAEAAIK--SLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE  453 (832)
T ss_pred             hhhhcchhhhhhhHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence            8888776666655554443222211  1122356788999999999999866655455678888766443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.63  E-value=4.3e-06  Score=80.15  Aligned_cols=274  Identities=16%  Similarity=0.111  Sum_probs=180.6

Q ss_pred             HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhh
Q 009514          181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSR  259 (533)
Q Consensus       181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~  259 (533)
                      .+...|++..|++++..++....+|..|.+.|-.+..  .++++.+...| +..++.+-+ .+.++.....+..|.+|-.
T Consensus       175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK  251 (832)
T KOG3678|consen  175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK  251 (832)
T ss_pred             HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence            3455789999999998887666778999998887764  45677777766 555555554 3467888888999999987


Q ss_pred             ccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514          260 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVD-FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA  338 (533)
Q Consensus       260 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a  338 (533)
                      +.+..+.. +++.|++..++-.++..+|.+...|+-+|+|.+.. ....+..+++..+-+.|..+..+.++-+|.+|+-+
T Consensus       252 HSeet~~~-Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA  330 (832)
T KOG3678|consen  252 HSEETCQR-LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA  330 (832)
T ss_pred             hhHHHHHH-HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence            76777777 89999999999999999999999999999998863 33456678888888888888888888899999999


Q ss_pred             HHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchh
Q 009514          339 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE  418 (533)
Q Consensus       339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~  418 (533)
                      ++.++...+  .-..+...+.+..+-.++.+-|+.-..          .+.   -++.-..+..-++.|+.+|.+ ..-+
T Consensus       331 V~vlat~KE--~E~~VrkS~TlaLVEPlva~~DP~~FA----------RD~---hd~aQG~~~d~LqRLvPlLdS-~R~E  394 (832)
T KOG3678|consen  331 VAVLATNKE--VEREVRKSGTLALVEPLVASLDPGRFA----------RDA---HDYAQGRGPDDLQRLVPLLDS-NRLE  394 (832)
T ss_pred             Hhhhhhhhh--hhHHHhhccchhhhhhhhhccCcchhh----------hhh---hhhhccCChHHHHHhhhhhhc-chhh
Confidence            999876332  333344444443333344333332110          000   001111111256667677775 4444


Q ss_pred             HHHHHHHHHHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          419 IEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       419 v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      -+.-+++-++.=+. .+......++.      +-|.++.|.++.+++|.-.-+-|..+|.-+.
T Consensus       395 Aq~i~AF~l~~EAaIKs~Q~K~kVFs------eIGAIQaLKevaSS~d~vaakfAseALtviG  451 (832)
T KOG3678|consen  395 AQCIGAFYLCAEAAIKSLQGKTKVFS------EIGAIQALKEVASSPDEVAAKFASEALTVIG  451 (832)
T ss_pred             hhhhHHHHHHHHHHHHHhccchhHHH------HHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence            44444443322221 11222233444      3688889999888887655555555665554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=2.1e-05  Score=80.57  Aligned_cols=336  Identities=19%  Similarity=0.249  Sum_probs=206.5

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHH
Q 009514          103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKL  181 (533)
Q Consensus       103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~  181 (533)
                      ...++.+.++++++.+|..|+-|..++...++    +.....|.++.|..++.| ++.+-..|..+|..+.+.+++....
T Consensus       122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~----~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP----DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh----hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence            34567778999999999999999999988654    345678999999999995 5677888888888887655421000


Q ss_pred             HHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc
Q 009514          182 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSI  261 (533)
Q Consensus       182 ~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~  261 (533)
                      -.....+..++..+...+ +|.    -+..+..++.+.+.-  ..-....+..+...|++.+..|...+.+.+.++....
T Consensus       198 ~l~~~~~~~lL~al~ec~-EW~----qi~IL~~l~~y~p~d--~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~  270 (734)
T KOG1061|consen  198 ELNPQLINKLLEALNECT-EWG----QIFILDCLAEYVPKD--SREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL  270 (734)
T ss_pred             cccHHHHHHHHHHHHHhh-hhh----HHHHHHHHHhcCCCC--chhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence            000111233333333331 222    233334444322211  1111246777888889999999999999998887654


Q ss_pred             ccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh-HHH------------HHHhC-------------
Q 009514          262 KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR-RST------------FIRLG-------------  315 (533)
Q Consensus       262 ~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~-~~~------------~~~~~-------------  315 (533)
                      ++...  .......++|+.++..+. +++..+..-+.-+....+.. +..            -++..             
T Consensus       271 ~~~~~--~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~n  347 (734)
T KOG1061|consen  271 KQVNE--LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDAN  347 (734)
T ss_pred             HHHHH--HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhH
Confidence            44222  244567788888887766 78877776665554432221 100            01111             


Q ss_pred             ---cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcch
Q 009514          316 ---GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS  392 (533)
Q Consensus       316 ---~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  392 (533)
                         .+..+..+...-+.+..+.+++++++++.-...    .   .+.++.++.+++-.-..+...++-.++.+....|..
T Consensus       348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~----~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~  420 (734)
T KOG1061|consen  348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ----S---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK  420 (734)
T ss_pred             HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh----h---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence               222333333445677888899999988653321    1   456888999998666666777777888888776655


Q ss_pred             HHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHH
Q 009514          393 VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA  472 (533)
Q Consensus       393 ~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a  472 (533)
                      .+.+.       ..+...+.+-.+|+.+.+-.|+++..+..-++ ...+            +..+++...+.+..|+.+-
T Consensus       421 ~~~vv-------~~l~~~~~sl~epeak~amiWilg~y~~~i~~-a~el------------L~~f~en~~dE~~~Vql~L  480 (734)
T KOG1061|consen  421 YESVV-------AILCENLDSLQEPEAKAALIWILGEYAERIEN-ALEL------------LESFLENFKDETAEVQLEL  480 (734)
T ss_pred             hhhhh-------hhhcccccccCChHHHHHHHHHHhhhhhccCc-HHHH------------HHHHHhhcccchHHHHHHH
Confidence            44433       33334444446789999999999988764332 2222            2344555556666666666


Q ss_pred             HHHHHhh
Q 009514          473 VWAVLNL  479 (533)
Q Consensus       473 ~~~L~~l  479 (533)
                      ..+...+
T Consensus       481 Lta~ik~  487 (734)
T KOG1061|consen  481 LTAAIKL  487 (734)
T ss_pred             HHHHHHH
Confidence            5555553

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=8.8e-05  Score=74.36  Aligned_cols=454  Identities=16%  Similarity=0.091  Sum_probs=251.3

Q ss_pred             cccccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCCh
Q 009514           11 YDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNP   89 (533)
Q Consensus        11 ~~l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~   89 (533)
                      .|..-...+..++.-++.+++++|+...+++..+....+..   ...-..+.+.++++. ...-|..+...++.+..++.
T Consensus        90 ~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~  166 (569)
T KOG1242|consen   90 VDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG  166 (569)
T ss_pred             cCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH
Confidence            34444567788899999999999999888888765332221   112245567777775 45677888888888876654


Q ss_pred             hhhhhhccccCcccHHHHHHHHhcCChhhHHH-HHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhc---CC-CCchhhhH
Q 009514           90 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLL-ASLCLIVIRNASPCYLQDVGIKTKLINNLLELL---DD-PGRVGDEA  164 (533)
Q Consensus        90 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~-a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll---~~-~~~~~~~a  164 (533)
                      ...  +   ...+.+..+....++.....+.. +.-+.-........     ..+...+|.+-.++   ++ ...+|..+
T Consensus       167 i~~--~---~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-----~~EPyiv~~lp~il~~~~d~~~~Vr~Aa  236 (569)
T KOG1242|consen  167 IES--L---KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-----PFEPYIVPILPSILTNFGDKINKVREAA  236 (569)
T ss_pred             Hhh--h---hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-----CCCchHHhhHHHHHHHhhccchhhhHHH
Confidence            432  1   22467777888888776654332 33332222222111     12233444444444   33 35666665


Q ss_pred             HHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCH
Q 009514          165 SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS  244 (533)
Q Consensus       165 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~  244 (533)
                      ..+...+...-+..   .+. ..+|.++.-+...  .|+.+.+++..++.++...+ ..-...-..++|.+.+.|.+..+
T Consensus       237 ~~a~kai~~~~~~~---aVK-~llpsll~~l~~~--kWrtK~aslellg~m~~~ap-~qLs~~lp~iiP~lsevl~DT~~  309 (569)
T KOG1242|consen  237 VEAAKAIMRCLSAY---AVK-LLLPSLLGSLLEA--KWRTKMASLELLGAMADCAP-KQLSLCLPDLIPVLSEVLWDTKP  309 (569)
T ss_pred             HHHHHHHHHhcCcc---hhh-HhhhhhHHHHHHH--hhhhHHHHHHHHHHHHHhch-HHHHHHHhHhhHHHHHHHccCCH
Confidence            55544332211110   011 1234444434333  37888999999998774332 22334456799999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514          245 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS  324 (533)
Q Consensus       245 ~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll  324 (533)
                      ++|.++..++..++.-.++.-     -..++|.|++.+.++...+ ..|...|+.=..  -......--+=.+|.|.+-+
T Consensus       310 evr~a~~~~l~~~~svidN~d-----I~~~ip~Lld~l~dp~~~~-~e~~~~L~~ttF--V~~V~~psLalmvpiL~R~l  381 (569)
T KOG1242|consen  310 EVRKAGIETLLKFGSVIDNPD-----IQKIIPTLLDALADPSCYT-PECLDSLGATTF--VAEVDAPSLALMVPILKRGL  381 (569)
T ss_pred             HHHHHHHHHHHHHHHhhccHH-----HHHHHHHHHHHhcCcccch-HHHHHhhcceee--eeeecchhHHHHHHHHHHHH
Confidence            999999999999987644432     2357888888888776443 333444422111  00000000011244444555


Q ss_pred             cCCCHHHHHHHHHHHHHhhccC-ChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 009514          325 KSMDSTIRLNALRALRNLIFLA-EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII  403 (533)
Q Consensus       325 ~~~~~~~~~~al~aL~~l~~~~-~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~  403 (533)
                      ...+..+++.++....|++.-. ++..-...+. ..++-+-..+.+..|++|.-+..+|..+..+...   .-+ ..  .
T Consensus       382 ~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~---~~f-~d--~  454 (569)
T KOG1242|consen  382 AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGE---VSF-DD--L  454 (569)
T ss_pred             hhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh---hcc-cc--c
Confidence            5566778888888999998654 3322222222 2355566666778999999999999887755211   111 11  4


Q ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHhccCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhc
Q 009514          404 LDAVGRQLRIASKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLT  480 (533)
Q Consensus       404 ~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~  480 (533)
                      .+.+...+.+.....-+..++..++....+- .+...            ..++.++....+.  ++.++..-.|.+.-+.
T Consensus       455 ~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~------------~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp  522 (569)
T KOG1242|consen  455 IPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVE------------DILPEILANASSVLIDERIRDGVIWLFYLLP  522 (569)
T ss_pred             ccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHH------------HHHHHHHHHHhhccchhhhccCeeehhhccc
Confidence            4555555544222333444455554444322 12222            3334444444433  3446766666665444


Q ss_pred             CCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHH
Q 009514          481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKL  516 (533)
Q Consensus       481 ~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~  516 (533)
                      .  . -..+...++  ..+++.+.+-+.|.++.++.
T Consensus       523 ~--~-~~~~~~~yi--~~i~~~~~k~~ad~de~~~~  553 (569)
T KOG1242|consen  523 Y--I-FGFQFQPYI--HEILDEFLKGLADNDEKGRD  553 (569)
T ss_pred             h--h-hhHHhHHHH--HHHHHHHHHHhhhcCCcccc
Confidence            2  0 111122222  23566777766655555443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=4.5e-05  Score=75.08  Aligned_cols=319  Identities=13%  Similarity=0.112  Sum_probs=191.8

Q ss_pred             hHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch
Q 009514          142 IKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE  220 (533)
Q Consensus       142 ~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~  220 (533)
                      ..++++|+.+..+++ +..++..|++.+-|+++....- ...+-......+.++..++  +..++ .+...+-.+-.+-.
T Consensus        81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDs--d~~V~-~~aeLLdRLikdIV  156 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADS--DQNVR-GGAELLDRLIKDIV  156 (675)
T ss_pred             HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCC--ccccc-cHHHHHHHHHHHhc
Confidence            456888999988885 5789999999999887432210 0011112234555544333  23333 33334443332110


Q ss_pred             hhhH-hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009514          221 CCRS-RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN  299 (533)
Q Consensus       221 ~~~~-~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n  299 (533)
                      .-+. .+--.+.+|.+-+-+...++..|....+-|.-+-.. +..... -.-..+.+-|+.+|.+++++++..+-.++.+
T Consensus       157 te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~-~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~  234 (675)
T KOG0212|consen  157 TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMI-SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE  234 (675)
T ss_pred             cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHH-hcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            0011 122235677777777778888888777777666333 222111 1234567788999999999999888888877


Q ss_pred             HhcCCchhHHHH-HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChh-HHHH
Q 009514          300 IVVDFTTRRSTF-IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPS-VQEQ  377 (533)
Q Consensus       300 l~~~~~~~~~~~-~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~-v~~~  377 (533)
                      +...-. ..... --...++.++.-++++++.++..|+.-+..+..-.++..  -..-.+.+..++.++.++++. +++.
T Consensus       235 fL~eI~-s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~--l~~~s~il~~iLpc~s~~e~~~i~~~  311 (675)
T KOG0212|consen  235 FLAEIR-SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL--LLYLSGILTAILPCLSDTEEMSIKEY  311 (675)
T ss_pred             HHHHHh-cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch--hhhhhhhhhhcccCCCCCccccHHHH
Confidence            654211 11111 123578889999999999999999888887765443211  112234456677777766553 4433


Q ss_pred             HH---HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhH
Q 009514          378 AL---ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ  454 (533)
Q Consensus       378 a~---~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  454 (533)
                      +.   +.+..++.......+  +..| .+++.+.+.+.+ ...+.+..++.-+..+-...+.  +.+.      +.+.+.
T Consensus       312 a~~~n~~l~~l~s~~~~~~~--id~~-~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~--ql~~------h~~~if  379 (675)
T KOG0212|consen  312 AQMVNGLLLKLVSSERLKEE--IDYG-SIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPG--QLLV------HNDSIF  379 (675)
T ss_pred             HHHHHHHHHHHHhhhhhccc--cchH-HHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcc--hhhh------hccHHH
Confidence            32   233444432211111  2222 277888888887 6777888887766666654442  2222      125677


Q ss_pred             HHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          455 SCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       455 ~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      +-|..-|++++.+|-..+...+.+++.
T Consensus       380 ~tLL~tLsd~sd~vvl~~L~lla~i~~  406 (675)
T KOG0212|consen  380 LTLLKTLSDRSDEVVLLALSLLASICS  406 (675)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence            888899999999999999999999996

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=3.2e-05  Score=79.20  Aligned_cols=410  Identities=18%  Similarity=0.180  Sum_probs=236.9

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHH-HHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhh
Q 009514           16 EENMEFLLSLLNNESENVSGLGAS-IISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVS   93 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~-~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~   93 (533)
                      .+.++.+-+-|.+....-+..|++ +|+.+.-..+.      .+..+.++..... +..++.-+--=+.+-+...|+.+ 
T Consensus        12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-   84 (734)
T KOG1061|consen   12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-   84 (734)
T ss_pred             hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-
Confidence            456666666666655555555444 66665433221      1223334443332 22333333223334355555443 


Q ss_pred             hhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhh
Q 009514           94 QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLI  172 (533)
Q Consensus        94 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~  172 (533)
                             ...+..++.-+.++++.+|..|.+.+..+-..        -+......+|.+.+.+ ++.++..++.+.+++-
T Consensus        85 -------~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~  149 (734)
T KOG1061|consen   85 -------ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF  149 (734)
T ss_pred             -------HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Confidence                   34566677777889999999888776654331        2345578888898985 6788999998888887


Q ss_pred             cCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHH
Q 009514          173 AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACM  252 (533)
Q Consensus       173 ~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~  252 (533)
                      ..+.+   ...+.|.++.|-.++.++  +|.+..+|+.+|..+...++...........+..+++.+..-+.--|.   .
T Consensus       150 ~~~~~---~~~~~gl~~~L~~ll~D~--~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi---~  221 (734)
T KOG1061|consen  150 DIDPD---LVEDSGLVDALKDLLSDS--NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI---F  221 (734)
T ss_pred             cCChh---hccccchhHHHHHHhcCC--CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH---H
Confidence            66654   345667778888877754  478889999999988765433111122233444555555444333333   3


Q ss_pred             HHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHH
Q 009514          253 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR  332 (533)
Q Consensus       253 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~  332 (533)
                      +|-.+++..+...   .-...++..+...|.+.++.+...+...+.++......... ..-...-++++.++.+.. +++
T Consensus       222 IL~~l~~y~p~d~---~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~q  296 (734)
T KOG1061|consen  222 ILDCLAEYVPKDS---REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQ  296 (734)
T ss_pred             HHHHHHhcCCCCc---hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhh
Confidence            3444444322211   11235677788888899999999999999888865444222 222345566776666655 555


Q ss_pred             HHHHHHHHHhhccCChHhHH--------------------HHHHh----hcH-HHHHhhh---CCCChhHHHHHHHHHHH
Q 009514          333 LNALRALRNLIFLAEDKCKE--------------------EIFME----LTA-SLLASLI---CDPEPSVQEQALALVRN  384 (533)
Q Consensus       333 ~~al~aL~~l~~~~~~~~~~--------------------~i~~~----~~~-~~l~~lL---~~~~~~v~~~a~~~L~~  384 (533)
                      ..+++-++-+....+...+.                    +++..    ..+ +.+.++.   .+-|.+...++++++++
T Consensus       297 yvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~  376 (734)
T KOG1061|consen  297 YVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGR  376 (734)
T ss_pred             HHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhh
Confidence            55555444443322211111                    11110    111 1111121   24467777888888888


Q ss_pred             hhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-
Q 009514          385 LVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-  463 (533)
Q Consensus       385 l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~-  463 (533)
                      ++..-++.      ++  +++.|..++.. ....+...++-.+..+....+...+.++            +.+...+.+ 
T Consensus       377 ~aik~e~~------~~--cv~~lLell~~-~~~yvvqE~~vvi~dilRkyP~~~~~vv------------~~l~~~~~sl  435 (734)
T KOG1061|consen  377 LAIKAEQS------ND--CVSILLELLET-KVDYVVQEAIVVIRDILRKYPNKYESVV------------AILCENLDSL  435 (734)
T ss_pred             hhhhhhhh------hh--hHHHHHHHHhh-cccceeeehhHHHHhhhhcCCCchhhhh------------hhhccccccc
Confidence            87543221      12  67777777776 5566666677777776665554333332            444455544 


Q ss_pred             CChhHHHHHHHHHHhhcC
Q 009514          464 NDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       464 ~~~~v~~~a~~~L~~l~~  481 (533)
                      .+++.|.+-.|.++..+.
T Consensus       436 ~epeak~amiWilg~y~~  453 (734)
T KOG1061|consen  436 QEPEAKAALIWILGEYAE  453 (734)
T ss_pred             CChHHHHHHHHHHhhhhh
Confidence            577899999999988884

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=0.00017  Score=73.18  Aligned_cols=215  Identities=17%  Similarity=0.135  Sum_probs=151.5

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHH
Q 009514          105 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAF  183 (533)
Q Consensus       105 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~  183 (533)
                      +.++.++++.-|.+|.-|+..++.++...|+    ..  ..++|.|..=|.+ ++.++..|..++..|+..++...-   
T Consensus       147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe----Al--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---  217 (877)
T KOG1059|consen  147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE----AL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---  217 (877)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH----hH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence            4577899999999999999999998875443    11  2589999999986 577999999999999988875321   


Q ss_pred             HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC-HHHHHHHHHHHHHH--hhc
Q 009514          184 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-SDVRSAACMCLRSV--SRS  260 (533)
Q Consensus       184 ~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~-~~v~~~a~~~L~~l--s~~  260 (533)
                        ..-|.+.+++..++.+|. .-..+..+++|+--.|..++     ..++++.+++.+.. ..+.+.+..++...  +..
T Consensus       218 --~LAP~ffkllttSsNNWm-LIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  218 --QLAPLFYKLLVTSSNNWV-LIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             --cccHHHHHHHhccCCCee-hHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence              234788898888766774 35567788888866665543     35888888888664 34555555544322  222


Q ss_pred             cccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 009514          261 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR  340 (533)
Q Consensus       261 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~  340 (533)
                      .++-...   ..-+++.|=.++.++|+.+++-++-|++.+...++...   . + --..+++.+.+.|+.+|..|+..|.
T Consensus       290 ~~d~~as---iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V---q-a-~kdlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSAS---IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV---Q-A-HKDLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             CCCcHHH---HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH---H-H-hHHHHHHHhccCCchhHHHHHHHHH
Confidence            1111111   11245566667789999999999999999986554322   2 1 1356678889999999999999998


Q ss_pred             Hhhc
Q 009514          341 NLIF  344 (533)
Q Consensus       341 ~l~~  344 (533)
                      -++.
T Consensus       362 gmVs  365 (877)
T KOG1059|consen  362 GMVS  365 (877)
T ss_pred             HHhh
Confidence            8864

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.50  E-value=0.00017  Score=69.83  Aligned_cols=449  Identities=15%  Similarity=0.106  Sum_probs=228.9

Q ss_pred             cccchHHHHhh-hcCCCcchhHHHHHHHHHhhcCchhHHHHHh----cCc--------------hHHHHHhhc--CChHH
Q 009514           15 QEENMEFLLSL-LNNESENVSGLGASIISHSCKTSLEQKLLFD----AGV--------------LKRLTSLLG--GSLIQ   73 (533)
Q Consensus        15 ~~~~i~~L~~l-L~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~----~g~--------------i~~L~~lL~--~~~~v   73 (533)
                      +++|-|.|+-| |+++++..+-.|..+++.+-..+..-....+    ...              -..|+-.|.  .++.+
T Consensus        44 ~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~  123 (728)
T KOG4535|consen   44 PELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQT  123 (728)
T ss_pred             CCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            35666665544 6788888888888888766533221111111    111              112333343  35677


Q ss_pred             HHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCC------------------
Q 009514           74 RDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC------------------  135 (533)
Q Consensus        74 ~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~------------------  135 (533)
                      ...+++||+++..+.|-.+.++--  -......+-.++++.|++|+..+...+-.+.....-                  
T Consensus       124 ~tq~~kcla~lv~~~p~~~l~~~~--~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~  201 (728)
T KOG4535|consen  124 VTQIIKCLANLVSNAPYDRLKLSL--LTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSA  201 (728)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHH--HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCcccccc
Confidence            789999999998877755432210  022333445578899999998887776655433200                  


Q ss_pred             --cc--hhhhh---------------------HhhhH-----------------HHHHHhcC---CCCchhhhHHHHHHh
Q 009514          136 --YL--QDVGI---------------------KTKLI-----------------NNLLELLD---DPGRVGDEASFAFSS  170 (533)
Q Consensus       136 --~~--~~~~~---------------------~~~~i-----------------~~L~~ll~---~~~~~~~~a~~~L~~  170 (533)
                        |.  .+.-.                     ....+                 ....+.++   +++.++.++.++|.-
T Consensus       202 ~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~  281 (728)
T KOG4535|consen  202 TPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTL  281 (728)
T ss_pred             CCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHH
Confidence              00  00000                     00000                 00011111   233456677777777


Q ss_pred             hhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc-----chhhhHhhhhhchHHHH------HHhc
Q 009514          171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-----LECCRSRCLSLQVLKLV------VDAL  239 (533)
Q Consensus       171 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-----~~~~~~~~~~~~~l~~l------~~~L  239 (533)
                      ++..-.-.+....+.  ...+...+  ++..+.+++++...+..+...     .++..+.-...+-+-.+      -...
T Consensus       282 ~a~~~~~~~~~~~~l--~RvI~~~~--~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~  357 (728)
T KOG4535|consen  282 LARYFSMTQAYLMEL--GRVICKCM--GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRAL  357 (728)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHccC--CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhh
Confidence            765433332222221  11222222  223467778777777665421     11111111111211111      1111


Q ss_pred             -CCCCHHHHHHHHHHHHHHhhc-cccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc
Q 009514          240 -AHDSSDVRSAACMCLRSVSRS-IKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG  316 (533)
Q Consensus       240 -~~~~~~v~~~a~~~L~~ls~~-~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~  316 (533)
                       ++..+..+..+|.++.+++.. ..++...   .....+....-. ++.+.-++.+|..+++-+..++..........+.
T Consensus       358 YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~---~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~a  434 (728)
T KOG4535|consen  358 YDSEHPTLQASACDALSSILPEAFSNLPND---RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADA  434 (728)
T ss_pred             hhhcCCCchhHHHHHHhhcCchhhcCCCCc---chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHH
Confidence             123345677788888887532 1111110   001111221122 2344557778888887777666555444444566


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhcc----C-ChH-hHHHHHHhhcHHHHHhh---hCCCChhHHHHHHHHHHHhhc
Q 009514          317 VKLLVQLSKSMDSTIRLNALRALRNLIFL----A-EDK-CKEEIFMELTASLLASL---ICDPEPSVQEQALALVRNLVD  387 (533)
Q Consensus       317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~----~-~~~-~~~~i~~~~~~~~l~~l---L~~~~~~v~~~a~~~L~~l~~  387 (533)
                      ...+...+.+..-..|..+.|+++|++..    . +++ ..+++.... +..+++.   -.-.+++|+.++.++|.|+..
T Consensus       435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~l-l~~~~~~A~~~~Ad~dkV~~navraLgnllQ  513 (728)
T KOG4535|consen  435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLL-LLKMLRSAIEASADKDKVKSNAVRALGNLLQ  513 (728)
T ss_pred             HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence            66667777777778899999999998642    1 111 112222211 1222221   123467899999999999873


Q ss_pred             CCcchHHHHHhhc-CchHH-HHHHHhcc---CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514          388 GRINSVEYIFAED-GIILD-AVGRQLRI---ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  462 (533)
Q Consensus       388 ~~~~~~~~i~~~~-~~~~~-~L~~~L~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~  462 (533)
                      -    .+.+.+.+ +.+++ ...+.++.   .....|+.++|++++|+.....-..+   +..+   -..+++.|..++.
T Consensus       514 v----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq---~~~w---A~~~F~~L~~Lv~  583 (728)
T KOG4535|consen  514 F----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ---TAPW---ASQAFNALTSLVT  583 (728)
T ss_pred             H----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc---CCCc---hHHHHHHHHHHHH
Confidence            2    12122211 00111 11122221   13568999999999999864321011   0000   0335577888876


Q ss_pred             c-CChhHHHHHHHHHHhhcCCC
Q 009514          463 S-NDSRLRTAAVWAVLNLTCSS  483 (533)
Q Consensus       463 ~-~~~~v~~~a~~~L~~l~~~~  483 (533)
                      + .|.++|..|+.+|..-..+.
T Consensus       584 ~~~NFKVRi~AA~aL~vp~~re  605 (728)
T KOG4535|consen  584 SCKNFKVRIRAAAALSVPGKRE  605 (728)
T ss_pred             HhccceEeehhhhhhcCCCCcc
Confidence            4 68999999999998877644

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.50  E-value=9.5e-05  Score=73.52  Aligned_cols=335  Identities=17%  Similarity=0.166  Sum_probs=194.6

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC-CcchhhhhHhhhHHHHHHhcC-CCCchhhhHHHHHHhhhcCCH--HH
Q 009514          103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASP-CYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKE--DM  178 (533)
Q Consensus       103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~a~~~L~~l~~~~~--~~  178 (533)
                      .+..++.+++++.+.+|..|+.....+...-. ++......  .+-..|.+.++ +++++.-....++..+.+...  ..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~--klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELA--KLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHH--HHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            45667789999999999999888777654321 11111122  22234666676 456655444444443321110  01


Q ss_pred             HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh-hchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009514          179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS-LQVLKLVVDALAHDSSDVRSAACMCLRSV  257 (533)
Q Consensus       179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~~l~~l~~~L~~~~~~v~~~a~~~L~~l  257 (533)
                      +-  -..|.+|.|.-+|.+.  +.++.++.+..++-+|...++... ..+ ..+-=-|++.|++-+.++|.+|...++.+
T Consensus       683 qp--Pi~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~~peyi~-~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I  757 (975)
T COG5181         683 QP--PISGILPSLTPILRNK--HQKVVANTIALVGTICMNSPEYIG-VREWMRICFELVDSLKSWNKEIRRNATETFGCI  757 (975)
T ss_pred             CC--chhhccccccHhhhhh--hHHHhhhHHHHHHHHHhcCcccCC-HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence            11  1246789999988775  477888888888888877665311 000 01222366777788999999999999988


Q ss_pred             hhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHH
Q 009514          258 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR  337 (533)
Q Consensus       258 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~  337 (533)
                      ++..        .-..++..|+.=|+..+-..+.-..-+|+-.+..+.+       -.++|.|+.=-..++..++...+.
T Consensus       758 s~ai--------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLk  822 (975)
T COG5181         758 SRAI--------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLK  822 (975)
T ss_pred             Hhhc--------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHH
Confidence            8752        2223344444444433333333333344333322222       135677776666788889999999


Q ss_pred             HHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc--hHHHHHhhcCchHHHHHHHhccCC
Q 009514          338 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN--SVEYIFAEDGIILDAVGRQLRIAS  415 (533)
Q Consensus       338 aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~~~~~~~~~~L~~~L~~~~  415 (533)
                      +++.+...-++..++.+..  ..|.|-..|.+.|+--+.-+...+++++.+++.  ..+..+.    ++++|...+-. +
T Consensus       823 am~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH----LlNllwpNIle-~  895 (975)
T COG5181         823 AMCFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH----LLNLLWPNILE-P  895 (975)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH----HHHHhhhhccC-C
Confidence            9998876554434444432  456677778899999999999999999988653  2223222    44555433333 5


Q ss_pred             chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          416 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       416 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      .|.+....--.+-.++.        ++..      .-++.-+.+-|-++...||+. -|...|...
T Consensus       896 sPhvi~~~~Eg~e~~~~--------~lg~------g~~m~Yv~qGLFHPs~~VRk~-ywtvyn~my  946 (975)
T COG5181         896 SPHVIQSFDEGMESFAT--------VLGS------GAMMKYVQQGLFHPSSTVRKR-YWTVYNIMY  946 (975)
T ss_pred             CcHHHHHHHHHHHHHHH--------Hhcc------HHHHHHHHHhccCchHHHHHH-HHHHHhhhh
Confidence            56555433222222221        1110      122344555667788888854 566666653

>TIGR02270 conserved hypothetical protein

Probab=98.49  E-value=2.9e-05  Score=76.99  Aligned_cols=212  Identities=13%  Similarity=0.084  Sum_probs=150.4

Q ss_pred             chHHHHHHhc-CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514          230 QVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  308 (533)
Q Consensus       230 ~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  308 (533)
                      .+++.++..| .+++..++..++.++...            .....+..|+..|.++++.++..++.+|+.+-.      
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~------------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQ------------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------  115 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhcc------------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc------
Confidence            3688888888 467788887766665211            112238899999999999999999999975431      


Q ss_pred             HHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          309 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       309 ~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                           .+..+.|..+++++++.+|..++.++.....  +           ..+.+..+|+++++.|+..++.+|+.+...
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--D-----------PGPALEAALTHEDALVRAAALRALGELPRR  177 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--C-----------hHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence                 3456788899999999999999888876321  1           256888899999999999999999998754


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhH
Q 009514          389 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL  468 (533)
Q Consensus       389 ~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v  468 (533)
                      .             ..+.|...+.+ .++.|+..+++.+..+..  +.                .+..+..+...+....
T Consensus       178 ~-------------a~~~L~~al~d-~~~~VR~aA~~al~~lG~--~~----------------A~~~l~~~~~~~g~~~  225 (410)
T TIGR02270       178 L-------------SESTLRLYLRD-SDPEVRFAALEAGLLAGS--RL----------------AWGVCRRFQVLEGGPH  225 (410)
T ss_pred             c-------------chHHHHHHHcC-CCHHHHHHHHHHHHHcCC--Hh----------------HHHHHHHHHhccCccH
Confidence            2             45666666666 899999999999977632  21                1234445444444444


Q ss_pred             HHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          469 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       469 ~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                      +..+...+...-      .         ..+++.|..+++++  .+++.+.+||+.+-
T Consensus       226 ~~~l~~~lal~~------~---------~~a~~~L~~ll~d~--~vr~~a~~AlG~lg  266 (410)
T TIGR02270       226 RQRLLVLLAVAG------G---------PDAQAWLRELLQAA--ATRREALRAVGLVG  266 (410)
T ss_pred             HHHHHHHHHhCC------c---------hhHHHHHHHHhcCh--hhHHHHHHHHHHcC
Confidence            434333333221      1         14678999999854  49999999998763

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=0.00044  Score=63.80  Aligned_cols=280  Identities=17%  Similarity=0.117  Sum_probs=173.9

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCch-----hHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCCh
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSL-----EQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNP   89 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~-----~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~   89 (533)
                      ++.+|.|-.-|..++..|+..+++.+..+-.+.+     .-..++..|..+.++..+.+ ++.|-.+|.+.+..++...+
T Consensus        81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa  160 (524)
T KOG4413|consen   81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA  160 (524)
T ss_pred             hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence            3556777777888999999999998887765433     23456789999999999887 67898999999999987655


Q ss_pred             hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhhhHHHH
Q 009514           90 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFA  167 (533)
Q Consensus        90 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~  167 (533)
                      .. ..+...+..+.+. +..+.--.+..+|......+..++..++. ........|.+..|..-++  ++.-++..+.+.
T Consensus       161 al-eaiFeSellDdlh-lrnlaakcndiaRvRVleLIieifSiSpe-saneckkSGLldlLeaElkGteDtLVianciEl  237 (524)
T KOG4413|consen  161 AL-EAIFESELLDDLH-LRNLAAKCNDIARVRVLELIIEIFSISPE-SANECKKSGLLDLLEAELKGTEDTLVIANCIEL  237 (524)
T ss_pred             HH-HHhcccccCChHH-HhHHHhhhhhHHHHHHHHHHHHHHhcCHH-HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHH
Confidence            44 3343321111111 22222233445566666777777766653 3445567888888887777  344567788888


Q ss_pred             HHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh---hHhhhhh--chHHHHHHhcCCC
Q 009514          168 FSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC---RSRCLSL--QVLKLVVDALAHD  242 (533)
Q Consensus       168 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~---~~~~~~~--~~l~~l~~~L~~~  242 (533)
                      ...++.-.-. ++.+.+.|.++.+.+++...+.+|--+..++...+.+-++..-.   ..++.+.  -.+....+.+...
T Consensus       238 vteLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn  316 (524)
T KOG4413|consen  238 VTELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN  316 (524)
T ss_pred             HHHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC
Confidence            8888743222 23445678888899988766556655555666666655432111   1122221  2344555666778


Q ss_pred             CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHH---HHH-hhcCCCHHHHHHHHHHHHHHhc
Q 009514          243 SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP---LVR-LLDDTSTAVQVAALGAISNIVV  302 (533)
Q Consensus       243 ~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~---Lv~-lL~~~~~~v~~~a~~aL~nl~~  302 (533)
                      ++..+..|..+++.|..+.+..  . +....+.|.   ++. ........-+..+..+|.+++.
T Consensus       317 DpdaieaAiDalGilGSnteGa--d-lllkTgppaaehllarafdqnahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  317 DPDAIEAAIDALGILGSNTEGA--D-LLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             CchHHHHHHHHHHhccCCcchh--H-HHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence            9999999999999997664321  1 333333333   332 2222222345666677777664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.39  E-value=1.5e-05  Score=83.55  Aligned_cols=224  Identities=18%  Similarity=0.258  Sum_probs=164.6

Q ss_pred             HHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhc
Q 009514          119 RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK  197 (533)
Q Consensus       119 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~  197 (533)
                      |.-|+..|..+...++= ..+-...-|++|..++||+.+ .+++.--.++=+++..-++.+|.-.++.+|-.-+++.|..
T Consensus       487 RlRAL~LL~RFLDlGpW-AV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPW-AVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHhccchh-hhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            55666666666665542 233345569999999999964 6677666777777766667788778887777777777766


Q ss_pred             -CCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCC-CHHHHHHHHHHHHHHhhccccccchhhhhcCcH
Q 009514          198 -GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV  275 (533)
Q Consensus       198 -~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i  275 (533)
                       +..+++.|..|+..|+.+..+-+.-++...+.+.+...++.|.++ .+-+|...|-||+.|=.+.+..+.. -.+.+.-
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~-G~r~~Ah  644 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS-GRRDNAH  644 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc-cccccHH
Confidence             334557888899999999887655566677788999999999985 6889999999999996665555554 3567888


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcC----CchhHHHH------------HHhCcH---HHHHHhhcCCCHHHHHHHH
Q 009514          276 IPLVRLLDDTSTAVQVAALGAISNIVVD----FTTRRSTF------------IRLGGV---KLLVQLSKSMDSTIRLNAL  336 (533)
Q Consensus       276 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~----~~~~~~~~------------~~~~~i---~~L~~ll~~~~~~~~~~al  336 (533)
                      +.|..+|.++-++||.+|+.||+.+..+    +++.....            ++..+.   ..++.+++...+-+|....
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~  724 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV  724 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence            9999999999999999999999999875    33322111            222222   2556667777788888888


Q ss_pred             HHHHHhhc
Q 009514          337 RALRNLIF  344 (533)
Q Consensus       337 ~aL~~l~~  344 (533)
                      -+|.++..
T Consensus       725 v~ls~~~~  732 (1387)
T KOG1517|consen  725 VALSHFVV  732 (1387)
T ss_pred             HHHHHHHH
Confidence            88887765

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.39  E-value=0.00017  Score=70.73  Aligned_cols=285  Identities=18%  Similarity=0.181  Sum_probs=184.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514          232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRS  309 (533)
Q Consensus       232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~  309 (533)
                      .+.+..++-+++..||.++.++++.+..+..... . +...++---++.-|.  ..+..-|++|...++.+...... . 
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~-~-~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~-  102 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQ-I-LLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-P-  102 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHH-H-HHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-c-
Confidence            3444434444449999999999999876633332 2 344554444555554  23556688999999888754221 1 


Q ss_pred             HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514          310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~  389 (533)
                      ..+..|++..++....++++..|..++.+|+.++...+    +-+.++||+..+.+.+-++..++.+..+.++.++... 
T Consensus       103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P----~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~-  177 (371)
T PF14664_consen  103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP----ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS-  177 (371)
T ss_pred             ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH----HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC-
Confidence            22346889999999999999999999999999987432    5677899999999999887777888888888888765 


Q ss_pred             cchHHHHHhhcCchHHHHHHHhccC------Cch--hHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 009514          390 INSVEYIFAEDGIILDAVGRQLRIA------SKA--EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL  461 (533)
Q Consensus       390 ~~~~~~i~~~~~~~~~~L~~~L~~~------~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L  461 (533)
                      |...+++...-+  ++.+..-+.+.      .+.  +-...+..++..+...=+...-...      .+...++.++..|
T Consensus       178 p~tR~yl~~~~d--L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~------~~~~~lksLv~~L  249 (371)
T PF14664_consen  178 PRTRKYLRPGFD--LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM------NDFRGLKSLVDSL  249 (371)
T ss_pred             cchhhhhcCCcc--HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec------CCchHHHHHHHHH
Confidence            333444433221  23332222221      122  2334444455444432111111111      1234567788888


Q ss_pred             ccCChhHHHHHHHHHHhhcCCCCC---------------CcH----------------------------HH-----HHH
Q 009514          462 QSNDSRLRTAAVWAVLNLTCSSSP---------------GSS----------------------------GR-----LVK  493 (533)
Q Consensus       462 ~~~~~~v~~~a~~~L~~l~~~~~~---------------~~~----------------------------~~-----~~~  493 (533)
                      ..++.++|......+..+-.-+..               +..                            ++     ...
T Consensus       250 ~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~i  329 (371)
T PF14664_consen  250 RLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAI  329 (371)
T ss_pred             cCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHH
Confidence            888888888777777655432100               100                            00     345


Q ss_pred             HHHCCcHHHHHhhhcCC-CCcHHHHHHHHHHHHhhhcccCC
Q 009514          494 LHDAGIVSHVKNMVNDP-CLDVKLRVKTALEQFNSFDDSLV  533 (533)
Q Consensus       494 l~~~g~~~~L~~ll~~~-~~~v~~~a~~aL~~~~~~~~~~~  533 (533)
                      +.+.|.++.|+++..+. +..+..+|.--|+.+...+++++
T Consensus       330 li~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la~~lL  370 (371)
T PF14664_consen  330 LIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLASRLL  370 (371)
T ss_pred             HHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhcC
Confidence            78999999999999765 88999999999999999888764

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.37  E-value=0.00016  Score=70.99  Aligned_cols=246  Identities=23%  Similarity=0.266  Sum_probs=166.3

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      ..++.++.++.+++..++..|+..+.....          ...++.+..++.. ++.+|..|..+|+.+-.         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---------  103 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD---------  103 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence            578999999999999999999888666542          4467888999986 77899999998887532         


Q ss_pred             ccccCcccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC-------------chh
Q 009514           96 VGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG-------------RVG  161 (533)
Q Consensus        96 ~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------------~~~  161 (533)
                           ...++.++..+. +++..+|..++..|..+..            ...++.++..+++..             .++
T Consensus       104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~------------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r  166 (335)
T COG1413         104 -----PEAVPPLVELLENDENEGVRAAAARALGKLGD------------ERALDPLLEALQDEDSGSAAAALDAALLDVR  166 (335)
T ss_pred             -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc------------hhhhHHHHHHhccchhhhhhhhccchHHHHH
Confidence                 235778888888 6999999999998886444            234777778777532             123


Q ss_pred             hhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC
Q 009514          162 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH  241 (533)
Q Consensus       162 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~  241 (533)
                      ..+...+..+.           +...++.+...+.+..  ..+|..+..+|+.+...+         ....+.+...+.+
T Consensus       167 ~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~--~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~  224 (335)
T COG1413         167 AAAAEALGELG-----------DPEAIPLLIELLEDED--ADVRRAAASALGQLGSEN---------VEAADLLVKALSD  224 (335)
T ss_pred             HHHHHHHHHcC-----------ChhhhHHHHHHHhCch--HHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcC
Confidence            33333333321           1223566777666653  568888888888776543         2356778888888


Q ss_pred             CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHH
Q 009514          242 DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV  321 (533)
Q Consensus       242 ~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~  321 (533)
                      +++.+|..++..+..+.            .....+.+...+.+.++.++..+..++...    ..       ......+.
T Consensus       225 ~~~~vr~~~~~~l~~~~------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~~-------~~~~~~l~  281 (335)
T COG1413         225 ESLEVRKAALLALGEIG------------DEEAVDALAKALEDEDVILALLAAAALGAL----DL-------AEAALPLL  281 (335)
T ss_pred             CCHHHHHHHHHHhcccC------------cchhHHHHHHHHhccchHHHHHHHHHhccc----Cc-------hhhHHHHH
Confidence            89999988888875542            234566788888877777776666666411    00       12344555


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhh
Q 009514          322 QLSKSMDSTIRLNALRALRNLI  343 (533)
Q Consensus       322 ~ll~~~~~~~~~~al~aL~~l~  343 (533)
                      ..+.+....++..+..++....
T Consensus       282 ~~~~~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         282 LLLIDEANAVRLEAALALGQIG  303 (335)
T ss_pred             HHhhcchhhHHHHHHHHHHhhc
Confidence            5566666666766666666553

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=0.00025  Score=65.39  Aligned_cols=378  Identities=11%  Similarity=0.062  Sum_probs=209.2

Q ss_pred             chHHHHHhhc-----CChHHHHHHHHHHHHHhcCCh--hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhh
Q 009514           59 VLKRLTSLLG-----GSLIQRDASLESIATIFKNNP--EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRN  131 (533)
Q Consensus        59 ~i~~L~~lL~-----~~~~v~~~al~aL~~l~~~~~--~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~  131 (533)
                      ..|.+...|+     .+..|+.-++..++.+.++.+  ++ ..+....+.+.++.++..+..++..|-.+|...+..++.
T Consensus        79 lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaV-seillvvNaeilklildcIggeddeVAkAAiesikrial  157 (524)
T KOG4413|consen   79 LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAV-SEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL  157 (524)
T ss_pred             hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhH-HHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence            3444444443     366899999999998876654  23 222222246778888888999999999999998888776


Q ss_pred             cCCCcchhhhhHhhhHHHH--HHhcC-CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHH
Q 009514          132 ASPCYLQDVGIKTKLINNL--LELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI  208 (533)
Q Consensus       132 ~~~~~~~~~~~~~~~i~~L--~~ll~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a  208 (533)
                      ....  ...+........+  ..+.. -++-++......+..+.+-.+........+|.+..|..-++.. .+.-++..+
T Consensus       158 fpaa--leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-eDtLVianc  234 (524)
T KOG4413|consen  158 FPAA--LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-EDTLVIANC  234 (524)
T ss_pred             cHHH--HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-cceeehhhH
Confidence            4311  1112222111111  11111 2334566777778888777777766677788888887767765 456677888


Q ss_pred             HHHHHHhhccchhhhHhhhhhchHHHHHHhcCC--CCHHHHHHHHHHHHHHhhccccccchhhhhcCc-------HHHHH
Q 009514          209 LLALADMCSKLECCRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI-------VIPLV  279 (533)
Q Consensus       209 ~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~-------i~~Lv  279 (533)
                      +.....++. .+.-|..+.+.|.+..+...+..  .+|--+..+....+.+-.. .+...  +.+...       +...+
T Consensus       235 iElvteLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk-eaimd--vseeaicealiiaidgsf  310 (524)
T KOG4413|consen  235 IELVTELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-EAIMD--VSEEAICEALIIAIDGSF  310 (524)
T ss_pred             HHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-hHHhh--cCHHHHHHHHHHHHHhhH
Confidence            888888874 34556667788999999888863  3343333333333332111 11100  111222       33345


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc--HHHHH-HhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH
Q 009514          280 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG--VKLLV-QLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM  356 (533)
Q Consensus       280 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~--i~~L~-~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~  356 (533)
                      ++....|+..++.|..+++.+-.. .+.++.+.+.|-  .+.++ +....+...-+..++.+|.+++...-+. .+++. 
T Consensus       311 EmiEmnDpdaieaAiDalGilGSn-teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlk-peqit-  387 (524)
T KOG4413|consen  311 EMIEMNDPDAIEAAIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLK-PEQIT-  387 (524)
T ss_pred             HhhhcCCchHHHHHHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCC-hhhcc-
Confidence            556677999999999999988753 455555555552  22222 2222222334566777777765321100 00111 


Q ss_pred             hhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChh
Q 009514          357 ELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES  436 (533)
Q Consensus       357 ~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~  436 (533)
                                  +...+.+..+.| ....+....        -  .-++++...++. +.++++..+...+..++.. ++
T Consensus       388 ------------Dgkaeerlrcli-fdaaaqstk--------l--dPleLFlgilqQ-pfpEihcAalktfTAiaaq-PW  442 (524)
T KOG4413|consen  388 ------------DGKAEERLRCLI-FDAAAQSTK--------L--DPLELFLGILQQ-PFPEIHCAALKTFTAIAAQ-PW  442 (524)
T ss_pred             ------------ccHHHHHHHHHH-HHHHhhccC--------C--ChHHHHHHHHcC-CChhhHHHHHHHHHHHHcC-cH
Confidence                        111112222211 111111110        0  034555566665 8899999999999999875 45


Q ss_pred             hHHHHHHHhhHhhhhhhHHHHHHhhccC---ChhHHHHHHHHHHh
Q 009514          437 HKEAVMDQLLLRAENKAQSCIIKFLQSN---DSRLRTAAVWAVLN  478 (533)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~lv~~L~~~---~~~v~~~a~~~L~~  478 (533)
                      ....++..      .+++..+...-...   ..+.|.++|.+|.+
T Consensus       443 alkeifak------eefieiVtDastEhaKaakdAkYeccKAiae  481 (524)
T KOG4413|consen  443 ALKEIFAK------EEFIEIVTDASTEHAKAAKDAKYECCKAIAE  481 (524)
T ss_pred             HHHHHhcC------ccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence            55556542      44443333322211   12455666666643

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=0.0051  Score=62.66  Aligned_cols=333  Identities=18%  Similarity=0.177  Sum_probs=182.4

Q ss_pred             HHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccc
Q 009514           20 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP   98 (533)
Q Consensus        20 ~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~   98 (533)
                      ..-++||+++..+-+.-.-..++.+-+.+..   +.+ -++..+..-|.+ ++-...-|+++++++...  +.++.+   
T Consensus        77 mEaV~LLss~kysEKqIGYl~is~L~n~n~d---l~k-lvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~---  147 (938)
T KOG1077|consen   77 MEAVNLLSSNKYSEKQIGYLFISLLLNENSD---LMK-LVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAF---  147 (938)
T ss_pred             HHHHHHhhcCCccHHHHhHHHHHHHHhcchH---HHH-HHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHh---
Confidence            3456777766544333333333333322211   111 123344444544 566778899999998642  333333   


Q ss_pred             cCcccHHHHHHHHhcCC--hhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCC
Q 009514           99 DTGRTLSCIIEIVKDRF--ARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEK  175 (533)
Q Consensus        99 ~~~~~i~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~  175 (533)
                        ...|+   +++-+++  .-|+..|+-||..+.+..++    .+--.+....++.+|+|. -.+-..+...+..++..+
T Consensus       148 --~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD----l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~  218 (938)
T KOG1077|consen  148 --ADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD----LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKN  218 (938)
T ss_pred             --hhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc----ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcC
Confidence              23344   5555443  35788899999999987654    233457899999999964 455667777777777776


Q ss_pred             HHHHHHHHHcCcHHHHHHhhhcCC-----------CCchhHHHHHHHHHHhhc-cchhhhHhhhhhchHHHHHHhcCCC-
Q 009514          176 EDMQKLAFEVNGVDKLYNHLQKGS-----------LHPRRFEGILLALADMCS-KLECCRSRCLSLQVLKLVVDALAHD-  242 (533)
Q Consensus       176 ~~~~~~~~~~~~l~~L~~~L~~~~-----------~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~~l~~l~~~L~~~-  242 (533)
                      ++..+..+- -++..|..+.....           +.|=.+...++.|...-. .++..|..+.  .+++.++...+.. 
T Consensus       219 p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~  295 (938)
T KOG1077|consen  219 PESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPP  295 (938)
T ss_pred             CHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCc
Confidence            654332111 01122222111111           112245556666665522 1222222222  2444444444421 


Q ss_pred             -CHHHHH-----HHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc
Q 009514          243 -SSDVRS-----AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG  316 (533)
Q Consensus       243 -~~~v~~-----~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~  316 (533)
                       +..|+.     +..--..+++.+.+... .  .-...+..|-+++.+.++.+|+-|...++.|+.. ....+.+...  
T Consensus       296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~-~--ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--  369 (938)
T KOG1077|consen  296 KSKKVQHSNAKNAVLFEAISLAIHLDSEP-E--LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--  369 (938)
T ss_pred             cccchHhhhhHHHHHHHHHHHHHHcCCcH-H--HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--
Confidence             112221     11111223333212111 1  1234566777888888888999999999888863 3333333332  


Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514          317 VKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  387 (533)
Q Consensus       317 i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~  387 (533)
                      ...++..++ ..|..+|+.|+..|..+|..+   +.+.+     ++-+++.|.+.|+.+++...-=+.-+++
T Consensus       370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~I-----V~elLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQI-----VAELLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHhchh---hHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            677778888 678899999999999998633   33333     3446677777888888776654544543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.33  E-value=0.00021  Score=70.21  Aligned_cols=185  Identities=23%  Similarity=0.287  Sum_probs=136.5

Q ss_pred             cHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc
Q 009514          187 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA  266 (533)
Q Consensus       187 ~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~  266 (533)
                      .++.+.+.+.+.  ++.+|..+...++.+..           ...++.+..++.+.++.+|..|+.+|+.+         
T Consensus        44 ~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~---------  101 (335)
T COG1413          44 AADELLKLLEDE--DLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL---------  101 (335)
T ss_pred             hHHHHHHHHcCC--CHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc---------
Confidence            456777777765  36678888877665432           23589999999999999999999977554         


Q ss_pred             hhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC------------HHHHH
Q 009514          267 GSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD------------STIRL  333 (533)
Q Consensus       267 ~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~------------~~~~~  333 (533)
                         .....++.|++++. +++..++..|.++|+.+-..           ..+..++..+.+..            ..+|.
T Consensus       102 ---~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         102 ---GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             ---CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence               23456889999998 69999999999999877531           23666666666644            14566


Q ss_pred             HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514          334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI  413 (533)
Q Consensus       334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~  413 (533)
                      .+..++..+-.            ....+.+..++.+.+..++..+..+|..+......           +...+.+.+.+
T Consensus       168 ~a~~~l~~~~~------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~-----------~~~~l~~~~~~  224 (335)
T COG1413         168 AAAEALGELGD------------PEAIPLLIELLEDEDADVRRAAASALGQLGSENVE-----------AADLLVKALSD  224 (335)
T ss_pred             HHHHHHHHcCC------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhh-----------HHHHHHHHhcC
Confidence            67777776632            12467888899999999999999999888765311           44556566666


Q ss_pred             CCchhHHHHHHHHHHHhc
Q 009514          414 ASKAEIEIQGMYVLGNVA  431 (533)
Q Consensus       414 ~~~~~v~~~a~~~L~~l~  431 (533)
                       ++..++..++.+++.+-
T Consensus       225 -~~~~vr~~~~~~l~~~~  241 (335)
T COG1413         225 -ESLEVRKAALLALGEIG  241 (335)
T ss_pred             -CCHHHHHHHHHHhcccC
Confidence             88889999999888764

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=0.0037  Score=69.00  Aligned_cols=306  Identities=10%  Similarity=0.084  Sum_probs=161.7

Q ss_pred             hHHHHHHHHHHhhccchhhhHhhhh--hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh
Q 009514          204 RFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL  281 (533)
Q Consensus       204 ~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l  281 (533)
                      -+..|+.-++.++...   +..+..  ...+|.|..+=.+++..||.+...+=..+....+..-..  +-..+..-|+.-
T Consensus       973 Sk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~--y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen  973 SKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE--YLNEILDELLVN 1047 (1702)
T ss_pred             cccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH--HHHHHHHHHHHh
Confidence            3455555555555322   111211  247888888888999999876655544444331211111  223445556666


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHH----HHhhcCCCHHHHHHH---HHHHHHhhccC-Ch---Hh
Q 009514          282 LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLL----VQLSKSMDSTIRLNA---LRALRNLIFLA-ED---KC  350 (533)
Q Consensus       282 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L----~~ll~~~~~~~~~~a---l~aL~~l~~~~-~~---~~  350 (533)
                      |-+..++||+++|.||..|..+.+.-  .+.  +-+|.+    .+.+.+-.+.+|.+|   +.+|+.++... ++   .-
T Consensus      1048 lt~kewRVReasclAL~dLl~g~~~~--~~~--e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFD--QVK--EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred             ccchhHHHHHHHHHHHHHHHcCCChH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence            66789999999999999999865431  222  223443    344444456677764   45555554211 11   11


Q ss_pred             HHHHHHhhcHHHHHh-hhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc----------hhH
Q 009514          351 KEEIFMELTASLLAS-LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK----------AEI  419 (533)
Q Consensus       351 ~~~i~~~~~~~~l~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~----------~~v  419 (533)
                      .+++++ ..+|.++. -+-+.-.+++.-++.++..++...+..+.--+   +.+++.|......-.+          ..+
T Consensus      1124 ~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~---~~LIp~ll~~~s~lE~~vLnYls~r~~~~ 1199 (1702)
T KOG0915|consen 1124 GKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF---PKLIPLLLNAYSELEPQVLNYLSLRLINI 1199 (1702)
T ss_pred             HHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh---hHHHHHHHHHccccchHHHHHHHHhhhhh
Confidence            112221 22344433 12266789999999999999977554222111   1133333333322111          222


Q ss_pred             HHHHHHHH-HHhccCChhhHHHHHHHhhHh----hhhhhHHHHHHhhccC-ChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514          420 EIQGMYVL-GNVATGKESHKEAVMDQLLLR----AENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTCSSSPGSSGRLVK  493 (533)
Q Consensus       420 ~~~a~~~L-~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~lv~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  493 (533)
                      ..+++-.+ .+.+.+++  .-..++.+.++    .-.+++|.+.++++++ .-..|..|+..+.-|+..-..   ++ ..
T Consensus      1200 e~ealDt~R~s~akssp--mmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~---em-tP 1273 (1702)
T KOG0915|consen 1200 ETEALDTLRASAAKSSP--MMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS---EM-TP 1273 (1702)
T ss_pred             HHHHHHHHHHhhhcCCc--HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc---cc-Cc
Confidence            33333333 22333332  11112211111    1246778899998865 456777888888877742111   11 00


Q ss_pred             HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      .. -..+..+..-.+|.++.+++.-+.|.+++..++
T Consensus      1274 ~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1274 YS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred             ch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence            00 112355666667888889888888888887765

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=0.00039  Score=73.31  Aligned_cols=341  Identities=13%  Similarity=0.072  Sum_probs=201.2

Q ss_pred             cchHHHHhhhcC-CCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           17 ENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        17 ~~i~~L~~lL~~-~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      |..+.+..+|.+ .++.++..|..++.....+.+....++..|.+-.|+.+|.+.++.|+.+++.|..++....-.+.+.
T Consensus      1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred             cccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            455777777774 5788999999999999888888999999999999999999999999999999999986554444333


Q ss_pred             ccccCcccHHHHHH-HHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHH-HHHhcCCCCchhhhHHHHHHhhhc
Q 009514           96 VGPDTGRTLSCIIE-IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN-LLELLDDPGRVGDEASFAFSSLIA  173 (533)
Q Consensus        96 ~~~~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~-L~~ll~~~~~~~~~a~~~L~~l~~  173 (533)
                       .   -|++.-+.. ++.+..+..|..|+..+..+.-..-.-.+-.+.--.++|. ++..+.|++   +.+..++..-. 
T Consensus      1851 -~---hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P---EAaVH~fE~T~- 1922 (2235)
T KOG1789|consen 1851 -E---HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP---EAAVHMFESTS- 1922 (2235)
T ss_pred             -h---cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH---HHHHHHHhccC-
Confidence             2   345555554 4567778999999999988764331100101111122222 233333333   11222221111 


Q ss_pred             CCHH------HHHHHHHcCcHHHH-HHhhhcCCCC----chhHHHHHH---HHHHhhccchhhhHhh------------h
Q 009514          174 EKED------MQKLAFEVNGVDKL-YNHLQKGSLH----PRRFEGILL---ALADMCSKLECCRSRC------------L  227 (533)
Q Consensus       174 ~~~~------~~~~~~~~~~l~~L-~~~L~~~~~~----~~~~~~a~~---aL~~l~~~~~~~~~~~------------~  227 (533)
                      .+++      .+..+  ++.+... .++..+...+    +.+-|+.+-   +=...+...--+|.-+            .
T Consensus      1923 EnPELiWn~~~r~kv--S~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~F 2000 (2235)
T KOG1789|consen 1923 ENPELIWNEVTRQKV--SGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLF 2000 (2235)
T ss_pred             CCcccccCHhHHHHH--HHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHH
Confidence            1111      11100  0111111 1112221111    111111110   0000000000111111            1


Q ss_pred             hhchHHHHHHhcCCCCH--HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 009514          228 SLQVLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT  305 (533)
Q Consensus       228 ~~~~l~~l~~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~  305 (533)
                      -.+.+..+.+++...++  ..-..-..++..+-+..+++... +-..|.+|.++..+...+..+-..|...|..|+. +.
T Consensus      2001 L~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADq-ip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~ 2078 (2235)
T KOG1789|consen 2001 LTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQ-LPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQ 2078 (2235)
T ss_pred             HHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhh-CCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-cc
Confidence            13567777788875443  23333345566666666776665 6778999999999976666666899999999985 45


Q ss_pred             hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCC
Q 009514          306 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP  370 (533)
Q Consensus       306 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~  370 (533)
                      -+.+.+.....+..++..++..- ...--|+.+|..+......+.-.+.+..|.++.|+++|+..
T Consensus      2079 ~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2079 FCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            66778887777888887776543 33447888888886543334455667778899999999753

>PF05536 Neurochondrin: Neurochondrin

Probab=98.29  E-value=0.0067  Score=62.97  Aligned_cols=232  Identities=16%  Similarity=0.111  Sum_probs=147.4

Q ss_pred             hHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhh---hhhccccCcccHHHHHHHHhcC-------ChhhHHHHHHHHHH
Q 009514           60 LKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV---SQFVGPDTGRTLSCIIEIVKDR-------FARTRLLASLCLIV  128 (533)
Q Consensus        60 i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~---~~~~~~~~~~~i~~l~~ll~~~-------~~~v~~~a~~~L~~  128 (533)
                      ++..+.+|++ .+.-|-.++-.+.+++...+...   +.+.   +.-+...+-++++++       ....+..|+..|..
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~---~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVF---EAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHH---HhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            4556677776 55667788888888877665322   2232   233456667777752       22346678888888


Q ss_pred             hhhcCCCcchhhhhHhhhHHHHHHhcCC-CC-chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHH
Q 009514          129 IRNASPCYLQDVGIKTKLINNLLELLDD-PG-RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFE  206 (533)
Q Consensus       129 l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~  206 (533)
                      ++....  ....----+-||.|++.+.. ++ .+..++.++|..++...+. ++.+.+.|+++.|++.+.+.   +...+
T Consensus        84 f~~~~~--~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G-~~aLl~~g~v~~L~ei~~~~---~~~~E  157 (543)
T PF05536_consen   84 FCRDPE--LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG-AKALLESGAVPALCEIIPNQ---SFQME  157 (543)
T ss_pred             HcCChh--hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh-HHHHHhcCCHHHHHHHHHhC---cchHH
Confidence            887432  11111123689999999974 34 6778999999999955555 56788999999999988774   55688


Q ss_pred             HHHHHHHHhhccchhhhHhhhh-----hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccc-cchhhhhcCcHHHHHH
Q 009514          207 GILLALADMCSKLECCRSRCLS-----LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL-SAGSFMNETIVIPLVR  280 (533)
Q Consensus       207 ~a~~aL~~l~~~~~~~~~~~~~-----~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~~i~~Lv~  280 (533)
                      .++..+.++......  +...+     ..+++.+-..+.......+...+..|..+-...+.. ... ....++.+.+..
T Consensus       158 ~Al~lL~~Lls~~~~--~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~-~~~~~W~~~l~~  234 (543)
T PF05536_consen  158 IALNLLLNLLSRLGQ--KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLES-PPSPKWLSDLRK  234 (543)
T ss_pred             HHHHHHHHHHHhcch--hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcccccc-CChhhhHHHHHH
Confidence            999999988764321  11111     134555666666566667777888888875443211 111 234455555444


Q ss_pred             ----hhc-CCCHHHHHHHHHHHHHHhcC
Q 009514          281 ----LLD-DTSTAVQVAALGAISNIVVD  303 (533)
Q Consensus       281 ----lL~-~~~~~v~~~a~~aL~nl~~~  303 (533)
                          +|. ...++-|..+......+...
T Consensus       235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~  262 (543)
T PF05536_consen  235 GLRDILQSRLTPSQRDPALNLAASLLDL  262 (543)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence                444 35677788887777777653

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=0.0033  Score=67.14  Aligned_cols=376  Identities=15%  Similarity=0.156  Sum_probs=197.1

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCC---hhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNN---PEV   91 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~---~~~   91 (533)
                      ..+..|++.|++.+-.|+..||+.++++.+...  ..+. ..++...+.++..  ++..--.++-+|+.++...   |..
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            677889999999999999999999999886543  2222 2356666666653  3444456777778776532   111


Q ss_pred             hhhhccccCcccHHHHHHHHh--------cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhc-CC-CCchh
Q 009514           92 VSQFVGPDTGRTLSCIIEIVK--------DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL-DD-PGRVG  161 (533)
Q Consensus        92 ~~~~~~~~~~~~i~~l~~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll-~~-~~~~~  161 (533)
                      .        .+.+|.+++.+.        +....||.+|+...+.+++.......+.+ -....+.|+... -| .-..|
T Consensus       418 l--------~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~-l~~L~s~LL~~AlFDrevncR  488 (1133)
T KOG1943|consen  418 L--------EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPV-LQSLASALLIVALFDREVNCR  488 (1133)
T ss_pred             H--------HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHH-HHHHHHHHHHHHhcCchhhHh
Confidence            1        134455544332        23446899999999999987643211222 222333333222 23 34567


Q ss_pred             hhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHh-cC
Q 009514          162 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LA  240 (533)
Q Consensus       162 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~-L~  240 (533)
                      ..|..++-.......+.      --|++.+.. ...-  ....|.++-..+..-....+.++..     ++..++.- +.
T Consensus       489 RAAsAAlqE~VGR~~n~------p~Gi~Lis~-~dy~--sV~~rsNcy~~l~~~ia~~~~y~~~-----~f~~L~t~Kv~  554 (1133)
T KOG1943|consen  489 RAASAALQENVGRQGNF------PHGISLIST-IDYF--SVTNRSNCYLDLCVSIAEFSGYREP-----VFNHLLTKKVC  554 (1133)
T ss_pred             HHHHHHHHHHhccCCCC------CCchhhhhh-cchh--hhhhhhhHHHHHhHHHHhhhhHHHH-----HHHHHHhcccc
Confidence            77776666554321111      012222111 1110  0112233222222111111222222     23333332 55


Q ss_pred             CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH---HHHHH---h
Q 009514          241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR---STFIR---L  314 (533)
Q Consensus       241 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~---~~~~~---~  314 (533)
                      +=+..+|+.++++|.+++...+.     ......+|+++.....++..++.-+.-+.+.++.......   ..+.+   +
T Consensus       555 HWd~~irelaa~aL~~Ls~~~pk-----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~  629 (1133)
T KOG1943|consen  555 HWDVKIRELAAYALHKLSLTEPK-----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIA  629 (1133)
T ss_pred             cccHHHHHHHHHHHHHHHHhhHH-----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhh
Confidence            67889999999999999865332     3455788899988888888888766666666554221111   00111   1


Q ss_pred             C---cHHHHHH-hhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514          315 G---GVKLLVQ-LSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       315 ~---~i~~L~~-ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~  389 (533)
                      +   .++.+.. ..... ..-.+...+..+.++..... ......+.++-...+.+.+.+++ .++..+.+++..++.. 
T Consensus       630 ~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~-  706 (1133)
T KOG1943|consen  630 GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST-  706 (1133)
T ss_pred             hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH-
Confidence            2   2333322 12222 13445566666666654332 22333444444455555665566 7888888998887743 


Q ss_pred             cchHHHHHhhcCc---hHHHHHHHhccCCchhHHHHHHHHHHHhc
Q 009514          390 INSVEYIFAEDGI---ILDAVGRQLRIASKAEIEIQGMYVLGNVA  431 (533)
Q Consensus       390 ~~~~~~i~~~~~~---~~~~L~~~L~~~~~~~v~~~a~~~L~~l~  431 (533)
                           ++..+.+.   ++......+.+..+..++.....+++++.
T Consensus       707 -----y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp  746 (1133)
T KOG1943|consen  707 -----YVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLP  746 (1133)
T ss_pred             -----HHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCc
Confidence                 11111111   23333344444234556666666666554

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.28  E-value=0.00087  Score=65.05  Aligned_cols=465  Identities=15%  Similarity=0.168  Sum_probs=236.0

Q ss_pred             cchhHHHHHHHHHhhcCchhHHHHH----------hcCchHHHHHh-hcC-ChHHHHHHHHHHHHHhcCChhhhhhhccc
Q 009514           31 ENVSGLGASIISHSCKTSLEQKLLF----------DAGVLKRLTSL-LGG-SLIQRDASLESIATIFKNNPEVVSQFVGP   98 (533)
Q Consensus        31 ~~v~~~a~~~l~~~~~~~~~~~~i~----------~~g~i~~L~~l-L~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~   98 (533)
                      ..|+..|.-.+....+.-+ |..+.          .+||-|.|+-+ |+. +++-|.-|+..++.+-+........-.+.
T Consensus        10 akvr~~al~~~~~~~~~~~-~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~   88 (728)
T KOG4535|consen   10 AKVRQGALVCFLSTIKSIE-KKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT   88 (728)
T ss_pred             HHHHhhHHHHHHHHHhhhh-hhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence            4566666666666553322 33222          26677776544 344 77888888999888877654432111111


Q ss_pred             cCcc--c--------HHH----HH-HHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-CCCchhh
Q 009514           99 DTGR--T--------LSC----II-EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGD  162 (533)
Q Consensus        99 ~~~~--~--------i~~----l~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~  162 (533)
                      ....  .        +..    ++ -+-....+.+-....+||.++....+.+..+...-..+...+-++++ .+++++.
T Consensus        89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v  168 (728)
T KOG4535|consen   89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV  168 (728)
T ss_pred             CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence            0000  1        111    11 13345566777788999999988776543222222334444445555 4566776


Q ss_pred             hHHHHHHhhhcC---CHHHHHHHH----------HcCc----------HHHHHHhhhcCC--------------------
Q 009514          163 EASFAFSSLIAE---KEDMQKLAF----------EVNG----------VDKLYNHLQKGS--------------------  199 (533)
Q Consensus       163 ~a~~~L~~l~~~---~~~~~~~~~----------~~~~----------l~~L~~~L~~~~--------------------  199 (533)
                      .+.-++..+...   .++.+-.+.          ++-.          -+.+.+ +..++                    
T Consensus       169 s~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e-~~~~~~~~~~~~~~~i~~~~~i~~~  247 (728)
T KOG4535|consen  169 SSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEE-TSVSSPKGSSEPCWLIRLCISIVVL  247 (728)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhh-hccCCccCCCCCcceeeeeeeeeec
Confidence            666665555432   222211110          0000          011111 10000                    


Q ss_pred             -------------------CCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 009514          200 -------------------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS  260 (533)
Q Consensus       200 -------------------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~  260 (533)
                                         .+..+|..++..|..++.+-.-.+..++  .....+...+.+..+.++..++.++..+...
T Consensus       248 ~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~  325 (728)
T KOG4535|consen  248 PKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTG  325 (728)
T ss_pred             CCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHH
Confidence                               0011345555555555543222222222  2333344455677899999999999888543


Q ss_pred             cc-----cccchhhhhcCcHHHHHHhh----------cCCCHHHHHHHHHHHHHHhcCCchh----HH---HHHHhCcHH
Q 009514          261 IK-----NLSAGSFMNETIVIPLVRLL----------DDTSTAVQVAALGAISNIVVDFTTR----RS---TFIRLGGVK  318 (533)
Q Consensus       261 ~~-----~~~~~~~~~~~~i~~Lv~lL----------~~~~~~v~~~a~~aL~nl~~~~~~~----~~---~~~~~~~i~  318 (533)
                      ..     ...+. -...+   ++..++          ++..+..+.++|.++.++.......    ++   .++..|.  
T Consensus       326 lv~~~~P~~~k~-~~q~~---~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC--  399 (728)
T KOG4535|consen  326 LIQQYKPDSTKA-PDQRA---PFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGC--  399 (728)
T ss_pred             HhhhcCCCcccc-hhhhc---cHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcc--
Confidence            11     11111 01111   121111          1234567788888888886532211    10   1111111  


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHH-HHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC----Ccc--
Q 009514          319 LLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE-EIFMELTASLLASLICDPEPSVQEQALALVRNLVDG----RIN--  391 (533)
Q Consensus       319 ~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~-~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~----~~~--  391 (533)
                           -.+++.-++..|++++.-..-+.+  .+. ...-......++..+.+..-..|+++.|+++|++..    .|.  
T Consensus       400 -----~d~~~~lv~~aA~Ra~~VyVLHp~--lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~  472 (728)
T KOG4535|consen  400 -----NDSKNRLVKAAASRALGVYVLHPC--LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPD  472 (728)
T ss_pred             -----cchHHHHHHHHHHhhceeEEeccc--hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCch
Confidence                 122233467778888877665433  332 233344566777788888889999999999999754    232  


Q ss_pred             -hHHHHHhhcCchHHHHHHH--hccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH-hhccCChh
Q 009514          392 -SVEYIFAEDGIILDAVGRQ--LRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK-FLQSNDSR  467 (533)
Q Consensus       392 -~~~~i~~~~~~~~~~L~~~--L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~-~L~~~~~~  467 (533)
                       ..+.+..   ..+..+...  +.+..+.+|+..+..+|+|+..-    .+.+.+--+.-...+.+..++. ..-..+..
T Consensus       473 s~~eR~sg---~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~k  545 (728)
T KOG4535|consen  473 SFQERFSG---LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMK  545 (728)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccc
Confidence             1222221   122222221  12224578999999999988742    2222210000000111122221 22345778


Q ss_pred             HHHHHHHHHHhhcCCCCC--CcHHHHHHHHHCCcHHHHHhhhcC-CCCcHHHHHHHHHHH
Q 009514          468 LRTAAVWAVLNLTCSSSP--GSSGRLVKLHDAGIVSHVKNMVND-PCLDVKLRVKTALEQ  524 (533)
Q Consensus       468 v~~~a~~~L~~l~~~~~~--~~~~~~~~l~~~g~~~~L~~ll~~-~~~~v~~~a~~aL~~  524 (533)
                      ||=+||.+++||-.+..-  .+.++     ...+++.|..|+.+ .+..+|.+|+.||..
T Consensus       546 V~WNaCya~gNLfkn~a~~lq~~~w-----A~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v  600 (728)
T KOG4535|consen  546 VRWNACYAMGNLFKNPALPLQTAPW-----ASQAFNALTSLVTSCKNFKVRIRAAAALSV  600 (728)
T ss_pred             cchHHHHHHHHhhcCccccccCCCc-----hHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence            999999999999963211  01111     11246788888754 677888899888854

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.21  E-value=3.1e-05  Score=71.55  Aligned_cols=187  Identities=19%  Similarity=0.209  Sum_probs=118.0

Q ss_pred             CCCCchhHHHHHHHHHHhhccc--hhhhHhhhhh--chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcC
Q 009514          198 GSLHPRRFEGILLALADMCSKL--ECCRSRCLSL--QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNET  273 (533)
Q Consensus       198 ~~~~~~~~~~a~~aL~~l~~~~--~~~~~~~~~~--~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~  273 (533)
                      .+.+|..|..++..|..+...+  ......+.+.  ..+..+...+.+....+...|+.++..++...+..-..  ....
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~--~~~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP--YADI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH--HHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH--HHHH
Confidence            3357999999999999887655  2222222221  45567777788888889999999999998764443222  3456


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC---hHh
Q 009514          274 IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE---DKC  350 (533)
Q Consensus       274 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~---~~~  350 (533)
                      ++|.|++.+.++..-++..|..+|..++.... ....+    ..+.+.....+.++.+|..++..+..+....+   +..
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            78999999999999999999999999997544 11111    14566677888999999999999988865443   222


Q ss_pred             HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514          351 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN  391 (533)
Q Consensus       351 ~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~  391 (533)
                      .....-....+.+.+++.|++++||..|-.++..+....++
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            22211134577888999999999999999888887654443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=0.00086  Score=61.56  Aligned_cols=267  Identities=17%  Similarity=0.155  Sum_probs=158.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514          232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF  311 (533)
Q Consensus       232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  311 (533)
                      +.-+++++.+.+|.||..|..-+..++.. +..... -.+...++.+.+++.+.++  ...|+.+|.|++... ..++.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~-~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~l   79 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLS-KYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKKL   79 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhc-cchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHHH
Confidence            34578899999999999999988888654 111111 1345668889999987766  788999999999754 445566


Q ss_pred             HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHH--HH---hhcHHHHHhhhCCCChh---HHHHHHHHHH
Q 009514          312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI--FM---ELTASLLASLICDPEPS---VQEQALALVR  383 (533)
Q Consensus       312 ~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i--~~---~~~~~~l~~lL~~~~~~---v~~~a~~~L~  383 (533)
                      ++. .+..++..+.++....-...+..|.|++...+. .....  ..   ..++..+++...+.+..   -.......+.
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~-~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDE-VAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchH-HHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            655 777788888777666677788899999874432 11111  11   13344444444333222   2233445556


Q ss_pred             HhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHH-HHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHH----
Q 009514          384 NLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE-IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII----  458 (533)
Q Consensus       384 ~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv----  458 (533)
                      |++.... ....+........+.+. .+.+ .+..++ ...+.+|-|++-....|.. +++.     ..+++|.+.    
T Consensus       158 nls~~~~-gR~l~~~~k~~p~~kll-~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e-----~~~lLp~iLlPla  228 (353)
T KOG2973|consen  158 NLSQFEA-GRKLLLEPKRFPDQKLL-PFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDE-----SINLLPAILLPLA  228 (353)
T ss_pred             HHhhhhh-hhhHhcchhhhhHhhhh-cccc-cchhhhccchHHHHHhhhccchhHHH-Hhcc-----hHHHHHHHHhhcC
Confidence            6654422 12222221111122222 1233 455554 4566777777654432222 2220     123333332    


Q ss_pred             -----------------Hhhc-----cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc-CCCCcHH
Q 009514          459 -----------------KFLQ-----SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-DPCLDVK  515 (533)
Q Consensus       459 -----------------~~L~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-~~~~~v~  515 (533)
                                       ++|.     .+++.+|+.-..+|..|+.     +....+.++..|+.+.+..+=+ ..+++.+
T Consensus       229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-----T~~GRe~lR~kgvYpilRElhk~e~ded~~  303 (353)
T KOG2973|consen  229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-----TRAGREVLRSKGVYPILRELHKWEEDEDIR  303 (353)
T ss_pred             CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-----hhHhHHHHHhcCchHHHHHHhcCCCcHHHH
Confidence                             3443     3578899999999999995     5556688999999888887753 3456666


Q ss_pred             HHHH
Q 009514          516 LRVK  519 (533)
Q Consensus       516 ~~a~  519 (533)
                      +..-
T Consensus       304 ~ace  307 (353)
T KOG2973|consen  304 EACE  307 (353)
T ss_pred             HHHH
Confidence            5433

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.18  E-value=5e-05  Score=60.59  Aligned_cols=120  Identities=16%  Similarity=0.133  Sum_probs=102.3

Q ss_pred             hcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChH
Q 009514          271 NETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK  349 (533)
Q Consensus       271 ~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~  349 (533)
                      ..+.++.||.=.. ..+.+.++....-|.|++.++. +-..+.+.+++..++.-+..+++.+++.++..|+|+|-  ++.
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~-Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~   90 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPI-NYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKT   90 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcc-hHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChH
Confidence            3455666776554 5789999999999999997654 44578889999999999999999999999999999986  567


Q ss_pred             hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514          350 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV  393 (533)
Q Consensus       350 ~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  393 (533)
                      .++.+.+.++++.++..++++...+.-.++.++..++.+.....
T Consensus        91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r  134 (173)
T KOG4646|consen   91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTER  134 (173)
T ss_pred             HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchh
Confidence            89999999999999999999999999999999999998765433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.16  E-value=0.00013  Score=78.10  Aligned_cols=297  Identities=18%  Similarity=0.112  Sum_probs=184.5

Q ss_pred             HHHHHHHHhc-CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCC---HHH
Q 009514          104 LSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEK---EDM  178 (533)
Q Consensus       104 i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~---~~~  178 (533)
                      ++.+...+++ .....+.+|...|..++..-.    ++..-..++|.++.++.|+ ..+|..|..+|+.+....   +..
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            3444445554 345778999999999988543    3344567999999999975 689999998888775322   111


Q ss_pred             HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009514          179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS  258 (533)
Q Consensus       179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls  258 (533)
                      ...++-.-.+|.|-.++.+. ....+|-.-+..|+.|+..  .+  .+.+.+.-.....++++++.+-          ..
T Consensus       500 daniF~eYlfP~L~~l~~d~-~~~~vRiayAsnla~LA~t--A~--rFle~~q~~~~~g~~n~~nset----------~~  564 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDS-SAQIVRIAYASNLAQLAKT--AY--RFLELTQELRQAGMLNDPNSET----------AP  564 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccC-ccceehhhHHhhHHHHHHH--HH--HHHHHHHHHHhcccccCccccc----------cc
Confidence            12233334568888877664 3456777778888887731  12  2223222222333344443320          00


Q ss_pred             hccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514          259 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA  338 (533)
Q Consensus       259 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a  338 (533)
                      ....+.... -...++-+..+.+|.++++-|+..-...|+-|+.-+...+.   ..=+++.|+.+|++.+..+|.+-...
T Consensus       565 ~~~~~~~~~-~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks---ND~iLshLiTfLNDkDw~LR~aFfds  640 (1431)
T KOG1240|consen  565 EQNYNTELQ-ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS---NDVILSHLITFLNDKDWRLRGAFFDS  640 (1431)
T ss_pred             ccccchHHH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc---ccchHHHHHHHhcCccHHHHHHHHhh
Confidence            000000000 01122333456677888889999989998888864443221   11257888999999988887765555


Q ss_pred             HHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchh
Q 009514          339 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE  418 (533)
Q Consensus       339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~  418 (533)
                      +.-++...+    .+-+++..+|.|.+-|.|+++.|...|+++|..|+....-....+.+    +++....+|-+ |+.-
T Consensus       641 I~gvsi~VG----~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~----i~~~v~PlL~h-PN~W  711 (1431)
T KOG1240|consen  641 IVGVSIFVG----WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD----ILQDVLPLLCH-PNLW  711 (1431)
T ss_pred             ccceEEEEe----eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH----HHHhhhhheeC-chHH
Confidence            544433222    23356677888999999999999999999999999764322223333    44555555555 8889


Q ss_pred             HHHHHHHHHHHhcc
Q 009514          419 IEIQGMYVLGNVAT  432 (533)
Q Consensus       419 v~~~a~~~L~~l~~  432 (533)
                      |+..++.+|..++.
T Consensus       712 IR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  712 IRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998877765

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.0058  Score=67.51  Aligned_cols=310  Identities=12%  Similarity=0.072  Sum_probs=168.3

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc---C-ChHHHHHHHHHHHHHhcCChhh-
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG---G-SLIQRDASLESIATIFKNNPEV-   91 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~---~-~~~v~~~al~aL~~l~~~~~~~-   91 (533)
                      .-||.|.+.==+++..||..-..+=..+..++..   +++.-.-+++-.+|.   + .++||+++.-||..+....|.. 
T Consensus       998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~---~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~ 1074 (1702)
T KOG0915|consen  998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKK---VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ 1074 (1702)
T ss_pred             HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHH---HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH
Confidence            4567777776688888888666555555533332   344444445555554   3 7899999999999997665443 


Q ss_pred             -hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcC------CCcchhhhhHhhhHHHHHH--hcCCCCchhh
Q 009514           92 -VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS------PCYLQDVGIKTKLINNLLE--LLDDPGRVGD  162 (533)
Q Consensus        92 -~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~~i~~L~~--ll~~~~~~~~  162 (533)
                       .+.+     ......+++..+|-...||.+|-++...+++.-      .+...-..+-..++|.|+.  .+++-++++.
T Consensus      1075 ~~e~l-----pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1075 VKEKL-----PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred             HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHH
Confidence             2211     123334455566666678888766555544321      1111111223345665552  2334467888


Q ss_pred             hHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHH----------HHHHHHH-Hhhccchhhh--Hhh---
Q 009514          163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFE----------GILLALA-DMCSKLECCR--SRC---  226 (533)
Q Consensus       163 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~----------~a~~aL~-~l~~~~~~~~--~~~---  226 (533)
                      -+..++..+++.....-+. .-...+|.|++....- .+..+--          .++..+. +.+...+...  +..   
T Consensus      1150 ~si~tl~dl~Kssg~~lkP-~~~~LIp~ll~~~s~l-E~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~ 1227 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKELKP-HFPKLIPLLLNAYSEL-EPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINY 1227 (1702)
T ss_pred             HHHHHHHHHHHhchhhhcc-hhhHHHHHHHHHcccc-chHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHh
Confidence            8999999998766543221 1223455566533222 2221111          1111111 1111111110  000   


Q ss_pred             ----hhhchHHHHHHhcCCC-CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 009514          227 ----LSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV  301 (533)
Q Consensus       227 ----~~~~~l~~l~~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~  301 (533)
                          +=...+|.+.++++.+ .-..|..++..+..++...+.--+  -.....+..++..+++.++.++.+.+.|.+.++
T Consensus      1228 iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt--P~sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1228 IDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT--PYSGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred             hhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC--cchhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence                0124677777777754 456677777777777654222111  134456677777778899999999999999998


Q ss_pred             cCCch-hHHHHHHhCcHHHHH-HhhcCCCHHHHHHHHHHHHHhhc
Q 009514          302 VDFTT-RRSTFIRLGGVKLLV-QLSKSMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       302 ~~~~~-~~~~~~~~~~i~~L~-~ll~~~~~~~~~~al~aL~~l~~  344 (533)
                      ....+ ..+..     +..++ .++.. .+..+..++..+.++..
T Consensus      1306 k~Ss~dq~qKL-----ie~~l~~~l~k-~es~~siscatis~Ian 1344 (1702)
T KOG0915|consen 1306 KFSSPDQMQKL-----IETLLADLLGK-DESLKSISCATISNIAN 1344 (1702)
T ss_pred             hcCChHHHHHH-----HHHHHHHHhcc-CCCccchhHHHHHHHHH
Confidence            75544 22333     33443 33333 22333556666666543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.013  Score=60.67  Aligned_cols=272  Identities=18%  Similarity=0.146  Sum_probs=135.0

Q ss_pred             hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514          229 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  308 (533)
Q Consensus       229 ~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  308 (533)
                      ...++.+-..+.+....|...|++++.++....+  +    .-...+..|--++.++...+|-+|...|..++...+.. 
T Consensus       244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r----~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~-  316 (865)
T KOG1078|consen  244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--R----ELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA-  316 (865)
T ss_pred             hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH--h----hcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc-
Confidence            3467777778889999999999999998864411  1    11235666777788999999999999999988755432 


Q ss_pred             HHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          309 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       309 ~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                        +.-.+  .-|-.+..+.+..+-..|..+|-.   .........+...  +...+.=+++...-+...++.+|......
T Consensus       317 --v~~cN--~elE~lItd~NrsIat~AITtLLK---TG~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~fp~  387 (865)
T KOG1078|consen  317 --VTVCN--LDLESLITDSNRSIATLAITTLLK---TGTESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLKFPR  387 (865)
T ss_pred             --ccccc--hhHHhhhcccccchhHHHHHHHHH---hcchhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhhccH
Confidence              11111  223334444443333333333322   1111122222111  11111111222222222333333222211


Q ss_pred             Ccc----hHHHH-HhhcCc-----hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHH-Hhh----Hh--hhh
Q 009514          389 RIN----SVEYI-FAEDGI-----ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMD-QLL----LR--AEN  451 (533)
Q Consensus       389 ~~~----~~~~i-~~~~~~-----~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~----~~--~~~  451 (533)
                      ...    ....+ .++||.     +++.+...+..  .++-++.++.-|+.+...++........ +++    |.  ...
T Consensus       388 k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~--~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Ps  465 (865)
T KOG1078|consen  388 KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEE--NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPS  465 (865)
T ss_pred             HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHh--CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcc
Confidence            000    00111 112221     33444433332  3334444444444433322211000000 000    00  001


Q ss_pred             hhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          452 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       452 ~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      ..+.++.+...-.+..+|.+|..++.++... +.+.        ...+.-.|.+.+.|++.++|++|..+|..+.+
T Consensus       466 kyir~iyNRviLEn~ivRaaAv~alaKfg~~-~~~l--------~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  466 KYIRFIYNRVILENAIVRAAAVSALAKFGAQ-DVVL--------LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             hhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC-CCCc--------cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence            2233334444445778999999999999942 2222        22345577888889999999999999988873

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.15  E-value=9.6e-05  Score=77.78  Aligned_cols=226  Identities=16%  Similarity=0.151  Sum_probs=163.4

Q ss_pred             hhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC
Q 009514          162 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH  241 (533)
Q Consensus       162 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~  241 (533)
                      ..|...|+++..-.+=.-.....-|..|-.+++|+++.  .++|---+..=+.+..-++.++..+++.++-..+++.|.+
T Consensus       488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a--~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA--RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch--HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            34555555554222211122333577899999888764  4555555544455555678888889988888888888887


Q ss_pred             -C--CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcH
Q 009514          242 -D--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGV  317 (533)
Q Consensus       242 -~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i  317 (533)
                       .  +++-|..|+-.|..+.++..--... ..+.+.+...+..|.++ .+=++.-++-+|+.|-.++...+..=.+.++-
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~a-cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKA-CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHH-hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence             2  4588888999999998875443333 56778888888888874 78899999999999999998888777778999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhccC---ChHhHHHH------------HHhhc---HHHHHhhhCCCChhHHHHHH
Q 009514          318 KLLVQLSKSMDSTIRLNALRALRNLIFLA---EDKCKEEI------------FMELT---ASLLASLICDPEPSVQEQAL  379 (533)
Q Consensus       318 ~~L~~ll~~~~~~~~~~al~aL~~l~~~~---~~~~~~~i------------~~~~~---~~~l~~lL~~~~~~v~~~a~  379 (533)
                      +.|+.++.++-++||.+|+.||+.+..+.   .++....+            .+...   ...++.++++..+-++....
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~  724 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV  724 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence            99999999999999999999999998753   11111111            22222   24677788899999999988


Q ss_pred             HHHHHhhcCCc
Q 009514          380 ALVRNLVDGRI  390 (533)
Q Consensus       380 ~~L~~l~~~~~  390 (533)
                      -+|..+..+..
T Consensus       725 v~ls~~~~g~~  735 (1387)
T KOG1517|consen  725 VALSHFVVGYV  735 (1387)
T ss_pred             HHHHHHHHhhH
Confidence            88888877643

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.13  E-value=0.00093  Score=65.60  Aligned_cols=238  Identities=14%  Similarity=0.081  Sum_probs=155.7

Q ss_pred             HhhhHHHHH-HhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchh
Q 009514          143 KTKLINNLL-ELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC  221 (533)
Q Consensus       143 ~~~~i~~L~-~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~  221 (533)
                      .....+.+. -++.++..++..+.+++..+..+.... +.+.+.+.--.++.-|.....+..-|++|++.+..+......
T Consensus        23 ~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~  101 (371)
T PF14664_consen   23 LSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG  101 (371)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence            334455554 356667788888889999888777665 445555544445555665544556689999998888754221


Q ss_pred             hhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 009514          222 CRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV  301 (533)
Q Consensus       222 ~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~  301 (533)
                      .  .....|++..++....+.+...+..+...|..++...+..    +...|++..|++.+-++..++.+..+.++..+.
T Consensus       102 ~--~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l----v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL  175 (371)
T PF14664_consen  102 P--KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL----VAECGGIRVLLRALIDGSFSISESLLDTLLYLL  175 (371)
T ss_pred             c--ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH----HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence            1  1235688999999999999999999999999998875543    467899999999888776679999999999999


Q ss_pred             cCCchhHHHHHHhCcHHHHHHhhcC-------CCH--HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCCh
Q 009514          302 VDFTTRRSTFIRLGGVKLLVQLSKS-------MDS--TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP  372 (533)
Q Consensus       302 ~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~--~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~  372 (533)
                      .. +..++.+...--++.+..-..+       ++.  +.-..+..++..+...=+.-.---.-+..++..++..|..+++
T Consensus       176 d~-p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~  254 (371)
T PF14664_consen  176 DS-PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNP  254 (371)
T ss_pred             CC-cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCH
Confidence            54 4455444432233343332211       122  2333444455444321000000000001357788889999999


Q ss_pred             hHHHHHHHHHHHhhcC
Q 009514          373 SVQEQALALVRNLVDG  388 (533)
Q Consensus       373 ~v~~~a~~~L~~l~~~  388 (533)
                      +++...+.++..+..-
T Consensus       255 ~ir~~Ildll~dllri  270 (371)
T PF14664_consen  255 EIRKAILDLLFDLLRI  270 (371)
T ss_pred             HHHHHHHHHHHHHHCC
Confidence            9999999888887744

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=0.00011  Score=73.68  Aligned_cols=290  Identities=14%  Similarity=0.096  Sum_probs=171.8

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCC-----HHHHH
Q 009514          107 IIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK-----EDMQK  180 (533)
Q Consensus       107 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~-----~~~~~  180 (533)
                      +..+..+.++.||.+|+..|..+.....       .........++.++| +..++..|.+.+.-...-.     .+..+
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~k-------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFK-------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhccccc-------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            5556677777777777777776666211       112345566777775 5778888876665443222     11111


Q ss_pred             HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHH-HHHhh
Q 009514          181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL-RSVSR  259 (533)
Q Consensus       181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L-~~ls~  259 (533)
                      .-..-.+..++++.+.+.+  ..+|..|..+|+.+..-+++.-.+.    .-+.++.-+.  .+.......+.+ .+--+
T Consensus       276 ~kl~D~aF~~vC~~v~D~s--l~VRV~AaK~lG~~~~vSee~i~QT----LdKKlms~lR--Rkr~ahkrpk~l~s~Gew  347 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRS--LSVRVEAAKALGEFEQVSEEIIQQT----LDKKLMSRLR--RKRTAHKRPKALYSSGEW  347 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCc--eeeeehHHHHhchHHHhHHHHHHHH----HHHHHhhhhh--hhhhcccchHHHHhcCCc
Confidence            1111234677788777764  7789999999988765444432222    2222222111  000001111111 11111


Q ss_pred             cc-------------ccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514          260 SI-------------KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS  326 (533)
Q Consensus       260 ~~-------------~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~  326 (533)
                      +.             +..... ++..|.-..+|.-++++-.+|+.+|+.+++.|+...+.+.     ...+.-|+.++++
T Consensus       348 SsGk~~~advpsee~d~~~~s-iI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfND  421 (823)
T KOG2259|consen  348 SSGKEWNADVPSEEDDEEEES-IIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFND  421 (823)
T ss_pred             ccCccccccCchhhccccccc-cccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhcc
Confidence            10             011112 5667777889999999999999999999999998666543     2457889999999


Q ss_pred             CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHH
Q 009514          327 MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA  406 (533)
Q Consensus       327 ~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~  406 (533)
                      +...+|..|+.+|..++.+-       .+.+.-++.++..|.+.+.++++..-.+|.+.-..+.+.+..       ++..
T Consensus       422 E~~~VRL~ai~aL~~Is~~l-------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m-------~v~~  487 (823)
T KOG2259|consen  422 EIEVVRLKAIFALTMISVHL-------AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM-------CVAH  487 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-------HHHH
Confidence            99999999999999886532       122334778888899999999998887777654443322222       3344


Q ss_pred             HHHHhccCCchhHHHHHHHHHHHhccC
Q 009514          407 VGRQLRIASKAEIEIQGMYVLGNVATG  433 (533)
Q Consensus       407 L~~~L~~~~~~~v~~~a~~~L~~l~~~  433 (533)
                      +.+.|...|  +-+.....+++.+...
T Consensus       488 lL~~L~kyP--qDrd~i~~cm~~iGqn  512 (823)
T KOG2259|consen  488 LLKNLGKYP--QDRDEILRCMGRIGQN  512 (823)
T ss_pred             HHHHhhhCC--CCcHHHHHHHHHHhcc
Confidence            444444332  2233444455555543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.016  Score=59.18  Aligned_cols=336  Identities=10%  Similarity=0.094  Sum_probs=195.0

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNPEVVSQ   94 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~~l~~~~~~~~~~   94 (533)
                      ++..+..=|.|.++.-...|..+++++.+ .+.++.+.     +-+.++|.+   .+-|+.+|+-||-++...+|+... 
T Consensus       112 vin~iknDL~srn~~fv~LAL~~I~niG~-re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~-  184 (938)
T KOG1077|consen  112 VINSIKNDLSSRNPTFVCLALHCIANIGS-REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN-  184 (938)
T ss_pred             HHHHHHhhhhcCCcHHHHHHHHHHHhhcc-HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC-
Confidence            34445555667788888888889988873 33333332     234467754   457899998899999888887642 


Q ss_pred             hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-----------C-------
Q 009514           95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-----------D-------  156 (533)
Q Consensus        95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-----------~-------  156 (533)
                           .++-...++.++.+.+-.|-.++...+-.++..++...      .+++|.-+.-|.           |       
T Consensus       185 -----~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y------k~~~~~avs~L~riv~~~~t~~qdYTyy~vP  253 (938)
T KOG1077|consen  185 -----PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY------KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVP  253 (938)
T ss_pred             -----hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH------hhhHHHHHHHHHHHHhhcccchhhceeecCC
Confidence                 25678889999999999999999999888888776432      234444433331           1       


Q ss_pred             CCchhhhHHHHHHhhhcC-CHHHHHHHHHcCcHHHHHHhhhcCCCCchhH-----HHHHHHHHHhhccchhhhHhhhhhc
Q 009514          157 PGRVGDEASFAFSSLIAE-KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF-----EGILLALADMCSKLECCRSRCLSLQ  230 (533)
Q Consensus       157 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~-----~~a~~aL~~l~~~~~~~~~~~~~~~  230 (533)
                      .++++.+.+..|...... ++..+....  ..+..++...+.......++     .+.+.-.-+++.+-+.-...+  ..
T Consensus       254 ~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~  329 (938)
T KOG1077|consen  254 APWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SR  329 (938)
T ss_pred             ChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HH
Confidence            134566677777666422 222222221  12333433333221111111     122222223332211111111  13


Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514          231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRS  309 (533)
Q Consensus       231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~  309 (533)
                      .+..|-++|.+....+|+-|..-++.|+.+ +.....  + ......++..|+ +.|..++..|+..|..+++. ++.+ 
T Consensus       330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~da--v-K~h~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak-  403 (938)
T KOG1077|consen  330 AVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDA--V-KKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAK-  403 (938)
T ss_pred             HHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHH--H-HHHHHHHHHHhccccchHHHHHHHHHHHHHhch-hhHH-
Confidence            567788888999999999999999888766 221111  1 123667888888 78999999999999999853 2322 


Q ss_pred             HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHH-------------HHHHhhcHHHHHhhhCCCChhHHH
Q 009514          310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE-------------EIFMELTASLLASLICDPEPSVQE  376 (533)
Q Consensus       310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~-------------~i~~~~~~~~l~~lL~~~~~~v~~  376 (533)
                           .++..+++++...+..+|+.-.--+.=|++.-.++...             ...++..+.+++++.- .++++|.
T Consensus       404 -----~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~  477 (938)
T KOG1077|consen  404 -----QIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQG  477 (938)
T ss_pred             -----HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhH
Confidence                 23556777777777777766543333333211111110             1112233444444332 3567888


Q ss_pred             HHHHHHHHhhc
Q 009514          377 QALALVRNLVD  387 (533)
Q Consensus       377 ~a~~~L~~l~~  387 (533)
                      .|+..+....+
T Consensus       478 yaak~~fe~Lq  488 (938)
T KOG1077|consen  478 YAAKRLFEYLQ  488 (938)
T ss_pred             HHHHHHHHHHh
Confidence            88876665543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=0.00023  Score=71.49  Aligned_cols=220  Identities=18%  Similarity=0.184  Sum_probs=139.8

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcc----hhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHH
Q 009514          104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYL----QDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDM  178 (533)
Q Consensus       104 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~  178 (533)
                      ....++++++.+..||.+|++.++-+.+..+.+.    .+.-....++-.+-..+.| .-.++.+|+.+|..+-.-.++.
T Consensus       236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~  315 (823)
T KOG2259|consen  236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI  315 (823)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH
Confidence            3445678999999999999999988876653211    1111222344445555555 3467889998888775444443


Q ss_pred             HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHh--hc-----------cchhhhHhhhhhchHHHHHHhcCCCCHH
Q 009514          179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM--CS-----------KLECCRSRCLSLQVLKLVVDALAHDSSD  245 (533)
Q Consensus       179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l--~~-----------~~~~~~~~~~~~~~l~~l~~~L~~~~~~  245 (533)
                      -..-.+..    ++.-+...- ...  +..-...++-  ++           .+++-...++..|.-..++.-|.++..+
T Consensus       316 i~QTLdKK----lms~lRRkr-~ah--krpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~E  388 (823)
T KOG2259|consen  316 IQQTLDKK----LMSRLRRKR-TAH--KRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYE  388 (823)
T ss_pred             HHHHHHHH----Hhhhhhhhh-hcc--cchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHH
Confidence            22222222    221111100 000  0000000110  00           0111123466778888899999999999


Q ss_pred             HHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc
Q 009514          246 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK  325 (533)
Q Consensus       246 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~  325 (533)
                      ||.+|...++.|+.+.+..      ....+.-|+.+++++..+|+..|..+|..++..      ..++..-++.+..-+.
T Consensus       389 VR~AAV~Sl~~La~ssP~F------A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~  456 (823)
T KOG2259|consen  389 VRRAAVASLCSLATSSPGF------AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLE  456 (823)
T ss_pred             HHHHHHHHHHHHHcCCCCc------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHH
Confidence            9999999999998764432      235678899999999999999999999998853      2234456788888888


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 009514          326 SMDSTIRLNALRALRNL  342 (533)
Q Consensus       326 ~~~~~~~~~al~aL~~l  342 (533)
                      +.++++|++.-..|++.
T Consensus       457 D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  457 DRSVDVREALRELLKNA  473 (823)
T ss_pred             hcCHHHHHHHHHHHHhc
Confidence            89999999888888765

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.07  E-value=2.2e-05  Score=60.24  Aligned_cols=86  Identities=24%  Similarity=0.314  Sum_probs=70.0

Q ss_pred             HHHHHHhc-CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 009514          232 LKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST  310 (533)
Q Consensus       232 l~~l~~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~  310 (533)
                      +|.|++.| +++++.+|..++++|+.+            .....++.|+++++++++.++..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL------------GDPEAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC------------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc------------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57888988 899999999999999732            23467899999999999999999999998763         


Q ss_pred             HHHhCcHHHHHHhhcCCC-HHHHHHHHHHHH
Q 009514          311 FIRLGGVKLLVQLSKSMD-STIRLNALRALR  340 (533)
Q Consensus       311 ~~~~~~i~~L~~ll~~~~-~~~~~~al~aL~  340 (533)
                        ....++.|.+++.+++ ..+|..|.++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              2357889999888754 556888988874

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.06  E-value=1.7e-05  Score=54.60  Aligned_cols=55  Identities=27%  Similarity=0.477  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhh
Q 009514          417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNL  479 (533)
Q Consensus       417 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l  479 (533)
                      +.++..|+++|++++.......+...        ..+++.|+.+|+++++.||.+|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~--------~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL--------PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH--------HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH--------HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999999887766666555        57889999999999999999999999875

...

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.05  E-value=4.6e-05  Score=60.79  Aligned_cols=135  Identities=15%  Similarity=0.065  Sum_probs=106.4

Q ss_pred             CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc
Q 009514          186 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       186 ~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      +.+..|++-.... .+.+.+++...-|++++ .+|.+...+.+.+++..++..|..++..+..-+...|+|++-...+. 
T Consensus        16 ~Ylq~LV~efq~t-t~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~-   92 (173)
T KOG4646|consen   16 EYLQHLVDEFQTT-TNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA-   92 (173)
T ss_pred             HHHHHHHHHHHHh-ccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH-
Confidence            3466677766655 45778888888888887 46777788889999999999999999999999999999999774433 


Q ss_pred             chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514          266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS  324 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll  324 (533)
                      .. +.+++++|.++..+.++...+..+++.++..+.......+..+....++..+.+.-
T Consensus        93 ~~-I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~  150 (173)
T KOG4646|consen   93 KF-IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR  150 (173)
T ss_pred             HH-HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence            23 68899999999999999999999999999999876655566666544444444443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.026  Score=60.66  Aligned_cols=313  Identities=14%  Similarity=0.140  Sum_probs=178.9

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHH
Q 009514          103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQK  180 (533)
Q Consensus       103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~  180 (533)
                      .+..++..+++.+..+|-.|++.+..+....|..     .....+...++++.  +++..+.-++-+|+.++...--...
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            3444556778999999999999999988866532     22335555566665  4455666888888888743211100


Q ss_pred             HHHHcCcHHHHHHhhhcCC------CCchhHHHHHHHHHHhhccch-hhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHH
Q 009514          181 LAFEVNGVDKLYNHLQKGS------LHPRRFEGILLALADMCSKLE-CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC  253 (533)
Q Consensus       181 ~~~~~~~l~~L~~~L~~~~------~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~  253 (533)
                      ..  ...+|.+++-|.-..      .-..+|.+|+..+++++...+ ..-+-+...=.--.+...+.+..-..|.+|..+
T Consensus       417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA  494 (1133)
T KOG1943|consen  417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA  494 (1133)
T ss_pred             HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence            00  123455555443321      124588988888888876322 111112221122234445667788899999888


Q ss_pred             HHHH-hhccccccch------------------------hhh-hcCcHHHHHHh-----hcCCCHHHHHHHHHHHHHHhc
Q 009514          254 LRSV-SRSIKNLSAG------------------------SFM-NETIVIPLVRL-----LDDTSTAVQVAALGAISNIVV  302 (533)
Q Consensus       254 L~~l-s~~~~~~~~~------------------------~~~-~~~~i~~Lv~l-----L~~~~~~v~~~a~~aL~nl~~  302 (533)
                      +-.. .|. ++...+                        .+. -.|...+++.-     +.+-|..+++.++++|.+|+.
T Consensus       495 lqE~VGR~-~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~  573 (1133)
T KOG1943|consen  495 LQENVGRQ-GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL  573 (1133)
T ss_pred             HHHHhccC-CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            8654 442 222111                        011 13444555443     346699999999999999885


Q ss_pred             CCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHH--HHhh---cHHHHHhhhCC-----C-C
Q 009514          303 DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI--FMEL---TASLLASLICD-----P-E  371 (533)
Q Consensus       303 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i--~~~~---~~~~l~~lL~~-----~-~  371 (533)
                      -.+    +....+.+++++...-+.+...|....-+.+.++...- .+...+  ..+.   ++..++.-+.+     . .
T Consensus       574 ~~p----k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~-~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~  648 (1133)
T KOG1943|consen  574 TEP----KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALR-KLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQG  648 (1133)
T ss_pred             hhH----HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhh-hhhhhhhhhHHHHhhhhhhhccHHHHHHhccchH
Confidence            333    34446788999988888888888877777766654211 111000  0111   11111211111     1 1


Q ss_pred             hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          372 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       372 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                      .-++...+..+..+..+.+......+.++  ....+.+.+.+ ++ .++..+.++++.+..
T Consensus       649 ~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~--~~~ll~~~l~~-~n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  649 TLMRQATLKFIEQLSLSKDRLFQDFVIEN--WQMLLAQNLTL-PN-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHHHHH--HHHHHHHhhcc-hH-HHHHHHHHHHHHHHH
Confidence            34455566777777776654444444444  44455555544 44 788999999888774

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.03  E-value=1.3e-05  Score=51.33  Aligned_cols=40  Identities=13%  Similarity=0.145  Sum_probs=37.2

Q ss_pred             hhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514          220 ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  259 (533)
Q Consensus       220 ~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~  259 (533)
                      ++.+..+++.|++|.|+++|++++++++..|+++|+|+++
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            5678889999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.98  E-value=0.0015  Score=70.32  Aligned_cols=295  Identities=17%  Similarity=0.123  Sum_probs=183.2

Q ss_pred             HHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC-C-cc
Q 009514           62 RLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP-C-YL  137 (533)
Q Consensus        62 ~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~-~~  137 (533)
                      .+..-+++  ....+.+|+..|..++...++- ..+     .+.+|-++.++.++..+||..|+..|..+...-. . +.
T Consensus       426 ~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de-~~L-----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  426 VLTSCIRALKTIQTKLAALELLQELSTYIDDE-VKL-----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHhhhcchH-HHH-----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            33344443  4567888998888876543332 112     4678889999999999999999999887653321 1 11


Q ss_pred             hhhhhHhhhHHHHHHhcCCC--CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHh
Q 009514          138 QDVGIKTKLINNLLELLDDP--GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM  215 (533)
Q Consensus       138 ~~~~~~~~~i~~L~~ll~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l  215 (533)
                      ...+.-+-++|.|-.++.|+  ..++..-+..|+.+|.---.+.    +.+--.....++...+ +.        .....
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl----e~~q~~~~~g~~n~~n-se--------t~~~~  566 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL----ELTQELRQAGMLNDPN-SE--------TAPEQ  566 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH----HHHHHHHhcccccCcc-cc--------ccccc
Confidence            11233455889898888863  3466666677777763221111    1110001111122221 10        00000


Q ss_pred             hccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHH
Q 009514          216 CSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALG  295 (533)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~  295 (533)
                       ..+ .. ....-.++-..++.++.++++.||.+-...|.-|+.-....+    .+.-+++.|+..|++.|+.+|.+-..
T Consensus       567 -~~~-~~-~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLNDkDw~LR~aFfd  639 (1431)
T KOG1240|consen  567 -NYN-TE-LQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLNDKDWRLRGAFFD  639 (1431)
T ss_pred             -ccc-hH-HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcCccHHHHHHHHh
Confidence             001 11 111122344556778888888999988888887775433222    12345788999999999999998888


Q ss_pred             HHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHH
Q 009514          296 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ  375 (533)
Q Consensus       296 aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~  375 (533)
                      .|..++.....   .-.+...+|.|.+-+.+..+.|...|+.+|.-|+... .-.|..+.+  .++-...+|.+++.-||
T Consensus       640 sI~gvsi~VG~---rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~-ll~K~~v~~--i~~~v~PlL~hPN~WIR  713 (1431)
T KOG1240|consen  640 SIVGVSIFVGW---RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG-LLRKPAVKD--ILQDVLPLLCHPNLWIR  713 (1431)
T ss_pred             hccceEEEEee---eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc-ccchHHHHH--HHHhhhhheeCchHHHH
Confidence            88766643222   1234567788888899999999999999999998633 212333332  35667788899999999


Q ss_pred             HHHHHHHHHhhcC
Q 009514          376 EQALALVRNLVDG  388 (533)
Q Consensus       376 ~~a~~~L~~l~~~  388 (533)
                      ..++..+......
T Consensus       714 ~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  714 RAVLGIIAAIARQ  726 (1431)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999998877654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.98  E-value=1.7e-05  Score=50.70  Aligned_cols=39  Identities=36%  Similarity=0.473  Sum_probs=36.2

Q ss_pred             chhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514          305 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  343 (533)
Q Consensus       305 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~  343 (533)
                      +++++.+++.|+++.|+++++++++.++.+|+|+|+|++
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            456778999999999999999999999999999999986

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.0061  Score=56.15  Aligned_cols=274  Identities=15%  Similarity=0.126  Sum_probs=164.5

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHH
Q 009514          103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLA  182 (533)
Q Consensus       103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~  182 (533)
                      -+..++.++.+.+|.||..|+.-+..+.... .+. -.--....++.+.+++.+... -..|+.++.|++.+. ..++.+
T Consensus         4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~~-~~~-~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~-~l~~~l   79 (353)
T KOG2973|consen    4 ELVELVELLHSLSPPVRKAAVEHLLGLTGRG-LQS-LSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKE-ELRKKL   79 (353)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHhhccccc-hhh-hccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhH-HHHHHH
Confidence            3567889999999999999998888776541 111 111234678889999987655 457888999998654 455665


Q ss_pred             HHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh------hchHHHHHHhcCCC-CH-HHHHHHHHHH
Q 009514          183 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS------LQVLKLVVDALAHD-SS-DVRSAACMCL  254 (533)
Q Consensus       183 ~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~------~~~l~~l~~~L~~~-~~-~v~~~a~~~L  254 (533)
                      .+. .+..++..+.+..  .......+..|.|++..+.........      .|.......+.+.+ +. .--...+-.+
T Consensus        80 l~~-~~k~l~~~~~~p~--~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf  156 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQ--SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF  156 (353)
T ss_pred             HHH-HHHHHHHHhcCcc--cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence            554 6677777776653  335677788899999876554433221      34445555555543 21 1123345567


Q ss_pred             HHHhhccccccchhhhhcCcHH--HHHHhhcCCCHHHH-HHHHHHHHHHhcCCchhHHHHHH--hCcHHHHH--------
Q 009514          255 RSVSRSIKNLSAGSFMNETIVI--PLVRLLDDTSTAVQ-VAALGAISNIVVDFTTRRSTFIR--LGGVKLLV--------  321 (533)
Q Consensus       255 ~~ls~~~~~~~~~~~~~~~~i~--~Lv~lL~~~~~~v~-~~a~~aL~nl~~~~~~~~~~~~~--~~~i~~L~--------  321 (533)
                      .|+++. +..|.- +.+....+  .+..+-. ++..+| .-.++.|.|.+.+..... .++.  .+.++.++        
T Consensus       157 ~nls~~-~~gR~l-~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee  232 (353)
T KOG2973|consen  157 ANLSQF-EAGRKL-LLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEE  232 (353)
T ss_pred             HHHhhh-hhhhhH-hcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCccc
Confidence            777765 322322 34444322  2333333 455554 455678888876543322 2322  12222222        


Q ss_pred             -------------Hhhc-----CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHH
Q 009514          322 -------------QLSK-----SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALV  382 (533)
Q Consensus       322 -------------~ll~-----~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L  382 (533)
                                   +++.     .+++.+|..-+.+|--||..  ...|+.+.+.|+++.+-.+=+ .+++++++.+-...
T Consensus       233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vv  310 (353)
T KOG2973|consen  233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVV  310 (353)
T ss_pred             cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence                         2232     23688999999999888753  347888888887776665554 45677777666555


Q ss_pred             HHhhcCC
Q 009514          383 RNLVDGR  389 (533)
Q Consensus       383 ~~l~~~~  389 (533)
                      .-+....
T Consensus       311 q~Lv~~e  317 (353)
T KOG2973|consen  311 QMLVRLE  317 (353)
T ss_pred             HHHHhcc
Confidence            5555443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.0046  Score=65.68  Aligned_cols=363  Identities=15%  Similarity=0.117  Sum_probs=195.0

Q ss_pred             HHHHHHHHHhhhcCCCcc---hhhhhHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHh
Q 009514          120 LLASLCLIVIRNASPCYL---QDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNH  194 (533)
Q Consensus       120 ~~a~~~L~~l~~~~~~~~---~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~  194 (533)
                      ..+..+|.|+...+++-.   -.+..--|.++.+...+.  .++.++.-|.+++..+..+.+. -..+..+|.+..|+.+
T Consensus      1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C-v~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC-VTDLATCNVLTTLLTL 1821 (2235)
T ss_pred             HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH-HHHHHhhhHHHHHHHH
Confidence            356888889888776310   011122366777777776  3567888899888877655544 4667788888999998


Q ss_pred             hhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhhcc-ccccchhhhhc
Q 009514          195 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSI-KNLSAGSFMNE  272 (533)
Q Consensus       195 L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~-~~~~~~~~~~~  272 (533)
                      |.+.   |..|+.++..|.+|++. ++..+...+.|++..+..++- +.++.+|.+++..+..+.... ...+-. +.--
T Consensus      1822 LHS~---PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~-ITL~ 1896 (2235)
T KOG1789|consen 1822 LHSQ---PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVT-ITLI 1896 (2235)
T ss_pred             HhcC---hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCcee-eehH
Confidence            8876   67899999999999975 466677788898888887764 567899999999999996541 111111 1111


Q ss_pred             CcHHH-HHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH--HHH--HhCcHHHHH-HhhcC--CCHHHH----HH------
Q 009514          273 TIVIP-LVRLLDDTSTAVQVAALGAISNIVVDFTTRRS--TFI--RLGGVKLLV-QLSKS--MDSTIR----LN------  334 (533)
Q Consensus       273 ~~i~~-Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~--~~~--~~~~i~~L~-~ll~~--~~~~~~----~~------  334 (533)
                      .++|. ++..+++. |   +++..++-.-. +.++...  ...  -++.|...+ ++.+.  .++.+.    +.      
T Consensus      1897 kFLP~~f~d~~RD~-P---EAaVH~fE~T~-EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~E 1971 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDS-P---EAAVHMFESTS-ENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSE 1971 (2235)
T ss_pred             HhchHHHHHHHhcC-H---HHHHHHHhccC-CCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhh
Confidence            22222 33333332 2   22333332111 1111100  000  011122111 11110  011000    00      


Q ss_pred             -----HHHH--HHHhhccCChH---hHHHHHHhhcHHHHHhhhCCCChh--HHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 009514          335 -----ALRA--LRNLIFLAEDK---CKEEIFMELTASLLASLICDPEPS--VQEQALALVRNLVDGRINSVEYIFAEDGI  402 (533)
Q Consensus       335 -----al~a--L~~l~~~~~~~---~~~~i~~~~~~~~l~~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~i~~~~~~  402 (533)
                           ++..  +..+..  +|.   -+.+.+-.+.++.+++++..++++  ...-.-.++..+....|...+++=.-|  
T Consensus      1972 a~~E~aVGG~~~R~Fi~--~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LG-- 2047 (2235)
T KOG1789|consen 1972 ADKECAVGGSINREFVV--GPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLG-- 2047 (2235)
T ss_pred             hccCcccchhhhHHHhh--CCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCcc--
Confidence                 0000  000100  010   011222234466677777644332  222223344555555665444443333  


Q ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCC
Q 009514          403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS  482 (533)
Q Consensus       403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~  482 (533)
                      .++.++.-+.. .+..+...|+++|..++.+. -+.+.+-.       -.....++..+...-. .---|+.+|-.+.. 
T Consensus      2048 ylPK~~~Am~~-~n~s~P~SaiRVlH~Lsen~-~C~~AMA~-------l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~- 2116 (2235)
T KOG1789|consen 2048 YLPKFCTAMCL-QNTSAPRSAIRVLHELSENQ-FCCDAMAQ-------LPCIDGIMKSMKKQPS-LMGLAAEALKRLMK- 2116 (2235)
T ss_pred             chHHHHHHHHh-cCCcCcHHHHHHHHHHhhcc-HHHHHHhc-------cccchhhHHHHHhcch-HHHHHHHHHHHHHH-
Confidence            56666665555 55666688999999998643 24444332       1222345555553322 11256666666663 


Q ss_pred             CCCCcHHHHHHHHHCCcHHHHHhhhcCC
Q 009514          483 SSPGSSGRLVKLHDAGIVSHVKNMVNDP  510 (533)
Q Consensus       483 ~~~~~~~~~~~l~~~g~~~~L~~ll~~~  510 (533)
                        ....+-.....+.|.+|.|.+||+..
T Consensus      2117 --r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2117 --RNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             --HhHHHHHHHHhccCcHHHHHHHhccc
Confidence              23344566778999999999999743

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.92  E-value=0.066  Score=59.67  Aligned_cols=109  Identities=20%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHH-HHhhcCChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRL-TSLLGGSLIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      +-+..++..|+.+...+|..|.++|+.+...+...  +....+-..+ .++.+++..||++|+.-+|+....+++.... 
T Consensus       816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v--L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q-  892 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSV--LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ-  892 (1692)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh--hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-
Confidence            56788889999899999999999999988654431  1111111122 2334457799999999999987777766432 


Q ss_pred             ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCC
Q 009514           96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC  135 (533)
Q Consensus        96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  135 (533)
                             ....+..-+.++...||..+.+.++.++...+.
T Consensus       893 -------yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd  925 (1692)
T KOG1020|consen  893 -------YYDQIIERILDTGVSVRKRVIKILRDICEETPD  925 (1692)
T ss_pred             -------HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence                   345566777788889999999999999887654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.91  E-value=3.2e-05  Score=59.37  Aligned_cols=87  Identities=24%  Similarity=0.253  Sum_probs=69.8

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHH
Q 009514          317 VKLLVQLS-KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEY  395 (533)
Q Consensus       317 i~~L~~ll-~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  395 (533)
                      |+.|++.+ +++++.+|..++++|+.+-.            ...++.+.++++++++.++..++++|+.+..  ++    
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--~~----   62 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD--PE----   62 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--HH----
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--HH----
Confidence            57888888 78899999999999996521            1348889999999999999999999998742  11    


Q ss_pred             HHhhcCchHHHHHHHhccCCchhHHHHHHHHHH
Q 009514          396 IFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG  428 (533)
Q Consensus       396 i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~  428 (533)
                             .++.|.+.+.++.+..++..|+.+|+
T Consensus        63 -------~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   63 -------AIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -------THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                   67888888888666778999988875

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.91  E-value=0.019  Score=58.10  Aligned_cols=347  Identities=15%  Similarity=0.080  Sum_probs=188.7

Q ss_pred             hHHHHhhhcCCCc---chhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhh-
Q 009514           19 MEFLLSLLNNESE---NVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVV-   92 (533)
Q Consensus        19 i~~L~~lL~~~~~---~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~-   92 (533)
                      +|.|+..|.+++.   .-.+....+|+.+|..+.--..+.- ..+..+-....+  +...-...+.++.++........ 
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~   79 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ   79 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence            3678888887665   5567889999999976664322222 233333333332  33455566677776643332221 


Q ss_pred             -hhhccccCcccHHHHHHHHhc-----C--ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC---------
Q 009514           93 -SQFVGPDTGRTLSCIIEIVKD-----R--FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---------  155 (533)
Q Consensus        93 -~~~~~~~~~~~i~~l~~ll~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~---------  155 (533)
                       .......+...++.++++.-.     .  +..+-..+...+..+.+..+...+     ...+..+.+++-         
T Consensus        80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q-----~~~~~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ-----QEILDELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHHccccccCCCC
Confidence             000000012256666664421     1  123334445555555554432222     223444444332         


Q ss_pred             -CCCc---hhh----hHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh
Q 009514          156 -DPGR---VGD----EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL  227 (533)
Q Consensus       156 -~~~~---~~~----~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~  227 (533)
                       +...   .+.    -...++..+-.+..--    .....+..++++..+. .++..+..+...++.+...-+..  . .
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~-~~~~~~~~~~~~la~LvNK~~~~--~-~  226 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSS-EDEFSRLAALQLLASLVNKWPDD--D-D  226 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCCCh--h-h
Confidence             1110   111    1223333333222110    0012456777765555 34667888888888877541110  0 1


Q ss_pred             hhchHHHHHHhc-CCCCHHH----HHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 009514          228 SLQVLKLVVDAL-AHDSSDV----RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV  302 (533)
Q Consensus       228 ~~~~l~~l~~~L-~~~~~~v----~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  302 (533)
                      -...+..+...+ ...+...    -....|+...+.....      -.....+..|++++.+  +++...++.++.-+..
T Consensus       227 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~------~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~  298 (415)
T PF12460_consen  227 LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH------PLATELLDKLLELLSS--PELGQQAAKAFGILLS  298 (415)
T ss_pred             HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC------chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhc
Confidence            112333343333 2223333    3334444444432201      1223567778888876  7888999999998887


Q ss_pred             CCchh-------------HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh--hcHHHHHhhh
Q 009514          303 DFTTR-------------RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME--LTASLLASLI  367 (533)
Q Consensus       303 ~~~~~-------------~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~--~~~~~l~~lL  367 (533)
                      +.+..             ++.++ ...+|.+++-.+..+...|.+-+.||.++..+.+.   ..+..+  ..+|.+++-|
T Consensus       299 d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~---~vl~~~l~~LlPLLlqsL  374 (415)
T PF12460_consen  299 DSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK---SVLLPELPTLLPLLLQSL  374 (415)
T ss_pred             CcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHHHh
Confidence            63332             33344 35788888888877777899999999999987663   222222  2578888989


Q ss_pred             CCCChhHHHHHHHHHHHhhcCCcc
Q 009514          368 CDPEPSVQEQALALVRNLVDGRIN  391 (533)
Q Consensus       368 ~~~~~~v~~~a~~~L~~l~~~~~~  391 (533)
                      +.+|.+++..++.+|..+....++
T Consensus       375 ~~~~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  375 SLPDADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCHH
Confidence            999999999999999999877643

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.0035  Score=64.29  Aligned_cols=307  Identities=16%  Similarity=0.160  Sum_probs=187.6

Q ss_pred             HHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcH
Q 009514          110 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGV  188 (533)
Q Consensus       110 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l  188 (533)
                      -+++++..+|-...++|+.+-.        .-+-...+|.+...|.. .+.+|..|..++..+-...+..     --++.
T Consensus       107 DLQHPNEyiRG~TLRFLckLkE--------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L-----~pDap  173 (948)
T KOG1058|consen  107 DLQHPNEYIRGSTLRFLCKLKE--------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL-----IPDAP  173 (948)
T ss_pred             hccCchHhhcchhhhhhhhcCc--------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh-----cCChH
Confidence            4568888999988888776433        22345678888888874 5678888887777664432211     01233


Q ss_pred             HHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc---CCCCHHHHHHHHHHHHHHhhcccccc
Q 009514          189 DKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL---AHDSSDVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       189 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L---~~~~~~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      +.+-+.|... .++..+.+|+..|....   ++.        .+..+....   .+-++.++......++..+...+.  
T Consensus       174 eLi~~fL~~e-~DpsCkRNAFi~L~~~D---~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~--  239 (948)
T KOG1058|consen  174 ELIESFLLTE-QDPSCKRNAFLMLFTTD---PER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA--  239 (948)
T ss_pred             HHHHHHHHhc-cCchhHHHHHHHHHhcC---HHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH--
Confidence            3344555554 46777777776665432   221        233333332   233567777777888877764332  


Q ss_pred             chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 009514          266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIF  344 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~  344 (533)
                          ....++..+..+|.++++.+..+|+.+|.+++.++...+      -+...+++++-. ++..++.-.+--|..+..
T Consensus       240 ----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk------~Aa~~~i~l~~kesdnnvklIvldrl~~l~~  309 (948)
T KOG1058|consen  240 ----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK------AAASTYIDLLVKESDNNVKLIVLDRLSELKA  309 (948)
T ss_pred             ----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH------HHHHHHHHHHHhccCcchhhhhHHHHHHHhh
Confidence                235678899999999999999999999999986543322      123455555433 344444444444444421


Q ss_pred             cCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc------CCchh
Q 009514          345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI------ASKAE  418 (533)
Q Consensus       345 ~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~------~~~~~  418 (533)
                           ..+.+++.. +--++++|+++|-+++.+++.....+.....  ++.       ++..|.+-+..      ..+.+
T Consensus       310 -----~~~~il~~l-~mDvLrvLss~dldvr~Ktldi~ldLvssrN--ved-------iv~~Lkke~~kT~~~e~d~~~~  374 (948)
T KOG1058|consen  310 -----LHEKILQGL-IMDVLRVLSSPDLDVRSKTLDIALDLVSSRN--VED-------IVQFLKKEVMKTHNEESDDNGK  374 (948)
T ss_pred             -----hhHHHHHHH-HHHHHHHcCcccccHHHHHHHHHHhhhhhcc--HHH-------HHHHHHHHHHhccccccccchH
Confidence                 223444433 4557789999999999999998888876542  222       33344433321      12234


Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          419 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       419 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      .+..-..+|...+...++..            +.+++.+++++.+.++..-......+....
T Consensus       375 yRqlLiktih~cav~Fp~~a------------atvV~~ll~fisD~N~~aas~vl~FvrE~i  424 (948)
T KOG1058|consen  375 YRQLLIKTIHACAVKFPEVA------------ATVVSLLLDFISDSNEAAASDVLMFVREAI  424 (948)
T ss_pred             HHHHHHHHHHHHhhcChHHH------------HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            56677778877777666443            355688899999888755555554444444

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.86  E-value=0.0021  Score=57.82  Aligned_cols=89  Identities=20%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc--CChhHHHHHHHHHHhhc
Q 009514          403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~--~~~~v~~~a~~~L~~l~  480 (533)
                      .+..+..-+.. .+.-.+..++++++++-..                  -.+|.|.+.|.+  .++.||..|+.+|+.++
T Consensus       188 aI~al~~~l~~-~SalfrhEvAfVfGQl~s~------------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa  248 (289)
T KOG0567|consen  188 AINALIDGLAD-DSALFRHEVAFVFGQLQSP------------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA  248 (289)
T ss_pred             HHHHHHHhccc-chHHHHHHHHHHHhhccch------------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence            34445555555 4677889999999987531                  234677777764  46789999999999998


Q ss_pred             CCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHH
Q 009514          481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF  525 (533)
Q Consensus       481 ~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~  525 (533)
                      .               ...++.|.+.+.|+.+-|++.+..||.-.
T Consensus       249 ~---------------e~~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  249 D---------------EDCVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             C---------------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            3               12467899999999999999988888755

>PF05536 Neurochondrin: Neurochondrin

Probab=97.85  E-value=0.0027  Score=65.80  Aligned_cols=238  Identities=15%  Similarity=0.077  Sum_probs=150.9

Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh---hHhhhhhchHHHHHHhcCC-------CCHHHHHHHHHHHHHH
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC---RSRCLSLQVLKLVVDALAH-------DSSDVRSAACMCLRSV  257 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~---~~~~~~~~~l~~l~~~L~~-------~~~~v~~~a~~~L~~l  257 (533)
                      +...+++|+...  ..-|-.++..+..+...++..   ++.+.+.=+.+.+-++|..       +....+.-|...|..+
T Consensus         7 l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    7 LEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            556677777664  345677787888887655432   3456677677888888876       3356778888999999


Q ss_pred             hhccccccchhhhhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHH
Q 009514          258 SRSIKNLSAGSFMNETIVIPLVRLLDDTST-AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL  336 (533)
Q Consensus       258 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al  336 (533)
                      +.. ++.... -.-.+-+|.|++.+.+.+. ++...|..+|..++ ..+..++.+++.|+++.|.+.+.+ .+.....++
T Consensus        85 ~~~-~~~a~~-~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   85 CRD-PELASS-PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             cCC-hhhhcC-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            885 443322 1223668999999976655 99999999999999 567888899999999999998887 455688888


Q ss_pred             HHHHHhhccCChHhHHH--HHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcch-HHHHHhh--cCchHHHHHHHh
Q 009514          337 RALRNLIFLAEDKCKEE--IFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS-VEYIFAE--DGIILDAVGRQL  411 (533)
Q Consensus       337 ~aL~~l~~~~~~~~~~~--i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~--~~~~~~~L~~~L  411 (533)
                      .++.+++...+.+.-..  -.-...++.+.+.........+-..+..|..+....+.. .......  ...+...+..+|
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            89988876443211100  000112344444444444455666677777776554211 0000000  001445555666


Q ss_pred             ccCCchhHHHHHHHHHHHhc
Q 009514          412 RIASKAEIEIQGMYVLGNVA  431 (533)
Q Consensus       412 ~~~~~~~v~~~a~~~L~~l~  431 (533)
                      ++...++-+..++.....+.
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLL  260 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHH
Confidence            66455666666655555444

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=0.0069  Score=58.48  Aligned_cols=220  Identities=12%  Similarity=0.122  Sum_probs=156.8

Q ss_pred             cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC----C----cchhhhhHhhhHHHHHHhcCC-CCch------hhhHH
Q 009514          101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP----C----YLQDVGIKTKLINNLLELLDD-PGRV------GDEAS  165 (533)
Q Consensus       101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~----~----~~~~~~~~~~~i~~L~~ll~~-~~~~------~~~a~  165 (533)
                      ..+++.++.++.+++.++-.+.+..|..+....-    .    ...+..++.++++.|++.+.. +..+      .....
T Consensus       124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L  203 (536)
T KOG2734|consen  124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL  203 (536)
T ss_pred             hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence            4689999999999999999999999999875431    1    235667888999999999862 2222      24556


Q ss_pred             HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-----
Q 009514          166 FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-----  240 (533)
Q Consensus       166 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-----  240 (533)
                      .++.|+..-.+.....+++.|.+..|++-+...........+|...++-+..++.+.+..+....++..+++-+.     
T Consensus       204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~  283 (536)
T KOG2734|consen  204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH  283 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence            777788888888778888888888877755544223345778888888777777777777777788888777664     


Q ss_pred             CC----CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc--hhHHHHHHh
Q 009514          241 HD----SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT--TRRSTFIRL  314 (533)
Q Consensus       241 ~~----~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~~~~  314 (533)
                      ++    ..+..+.--.||+.+-....+ +.. |....+++-..-+++. ....+..+..+|-....++.  ++...+.+.
T Consensus       284 dP~~~~E~EmmeNLFdcLCs~lm~~~n-r~~-Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~  360 (536)
T KOG2734|consen  284 DPATVDEEEMMENLFDCLCSLLMAPAN-RER-FLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI  360 (536)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcChhh-hhh-hhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            21    235667777788777666333 333 6666677654445554 55668889999988887665  667778888


Q ss_pred             CcHHHHHHh
Q 009514          315 GGVKLLVQL  323 (533)
Q Consensus       315 ~~i~~L~~l  323 (533)
                      .++..+..+
T Consensus       361 lGLrtiF~~  369 (536)
T KOG2734|consen  361 LGLRTIFPL  369 (536)
T ss_pred             HhHHHHHHH
Confidence            888877754

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.78  E-value=0.0012  Score=60.89  Aligned_cols=180  Identities=14%  Similarity=0.177  Sum_probs=112.9

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCC--chhHHHHHH--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhh
Q 009514          283 DDTSTAVQVAALGAISNIVVDF--TTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL  358 (533)
Q Consensus       283 ~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~  358 (533)
                      .+.+++.+..|+.-|..++.+.  ......+.+  ...+..+...+.+....+...|+.++..++...+.....  .-..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~--~~~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP--YADI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH--HHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH--HHHH
Confidence            5679999999999999998755  222222221  144556667777777788899999999988654432222  2334


Q ss_pred             cHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCch-HHHHHHHhccCCchhHHHHHHHHHHHhccCCh--
Q 009514          359 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII-LDAVGRQLRIASKAEIEIQGMYVLGNVATGKE--  435 (533)
Q Consensus       359 ~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~-~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~--  435 (533)
                      .++.|++.+.+++.-+++.|..+|..++...+- ...       + ...+.....+ .++.++..++..+..+....+  
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-~~~-------~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~  165 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSY-SPK-------ILLEILSQGLKS-KNPQVREECAEWLAIILEKWGSD  165 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---H-------HHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-HHH-------HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccch
Confidence            578899999999999999999999999876540 000       2 3444444444 889999999998888876433  


Q ss_pred             -hhHH--HHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          436 -SHKE--AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       436 -~~~~--~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                       ....  ..+        ..+++.+...+.+++++||..|-.++..+..
T Consensus       166 ~~~l~~~~~~--------~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  166 SSVLQKSAFL--------KQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             -GGG--HHHH--------HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchH--------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence             1111  112        3577899999999999999999999888863

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=0.011  Score=58.12  Aligned_cols=262  Identities=16%  Similarity=0.134  Sum_probs=141.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514          233 KLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTF  311 (533)
Q Consensus       233 ~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  311 (533)
                      ..+..-..+++..+|..|+.+|.+++...+.....  .....+..++.- ..+.+.+|+.++..+|..+...-..   .-
T Consensus       261 ~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~t--h~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~  335 (533)
T KOG2032|consen  261 LSLANKATDPSAKSRGMACRGLGNTASGAPDKVRT--HKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DD  335 (533)
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHH--hHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cc
Confidence            33333445778899999999999998764433332  223344455554 4456789999999999877642111   11


Q ss_pred             HHh---CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH--hhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514          312 IRL---GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLICDPEPSVQEQALALVRNLV  386 (533)
Q Consensus       312 ~~~---~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~  386 (533)
                      ++.   ++.-.+..+..+.++++|.+|...++.|....+...++...+  .+....++-.|.++++.+-..+=..++.+.
T Consensus       336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~  415 (533)
T KOG2032|consen  336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCY  415 (533)
T ss_pred             hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcC
Confidence            112   344456677888999999999988888875444445544443  123344555567888877554444443332


Q ss_pred             cCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHH---HHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc
Q 009514          387 DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM---YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS  463 (533)
Q Consensus       387 ~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~---~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~  463 (533)
                      .+-      ..++   ....+.+.+..  .. .+-.+.   |++ .+..-.++.. .           -+.....-++++
T Consensus       416 p~l------~rke---~~~~~q~~ld~--~~-~~~q~Fyn~~c~-~L~~i~~d~l-~-----------~~~t~~~~~f~s  470 (533)
T KOG2032|consen  416 PNL------VRKE---LYHLFQESLDT--DM-ARFQAFYNQWCI-QLNHIHPDIL-M-----------LLLTEDQHIFSS  470 (533)
T ss_pred             chh------HHHH---HHHHHhhhhHH--hH-HHHHHHHHHHHH-HHhhhCHHHH-H-----------HHHHhchhheec
Confidence            221      0000   11111111111  00 000000   000 0000011000 0           011222334455


Q ss_pred             CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       464 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      ..+.+|..+...-.++.   +.-+++.....--.-....|..+..++.++++..+..|++.++.
T Consensus       471 swe~vr~aavl~t~~~v---d~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  471 SWEQVREAAVLKTTRSV---DSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             chHHHHHHHHHHHHHHH---HHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            56677777766665555   22333333333333345778888899999999999999998764

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.007  Score=62.20  Aligned_cols=322  Identities=12%  Similarity=0.133  Sum_probs=180.0

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-C-CCchhhhHHHHHHhhhcCCHHHHH
Q 009514          103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D-PGRVGDEASFAFSSLIAEKEDMQK  180 (533)
Q Consensus       103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~-~~~~~~~a~~~L~~l~~~~~~~~~  180 (533)
                      ..|.+...+.+.++.||.+|.-++..+++.... .     -..+-..+-..|. + ++.-+.+|.-.|...   +++.  
T Consensus       135 l~p~IracleHrhsYVRrNAilaifsIyk~~~~-L-----~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~Er--  203 (948)
T KOG1058|consen  135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-L-----IPDAPELIESFLLTEQDPSCKRNAFLMLFTT---DPER--  203 (948)
T ss_pred             hHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-h-----cCChHHHHHHHHHhccCchhHHHHHHHHHhc---CHHH--
Confidence            456667788999999999999999998876321 1     1122223334443 3 334445555444432   2221  


Q ss_pred             HHHHcCcHHHHHHhhhc-CCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514          181 LAFEVNGVDKLYNHLQK-GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  259 (533)
Q Consensus       181 ~~~~~~~l~~L~~~L~~-~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~  259 (533)
                            ++.-+.....+ ++..+..+...+..+...|..++.-     +...+..+..+|++.++.|+..|+..|..++.
T Consensus       204 ------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~-----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~  272 (948)
T KOG1058|consen  204 ------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE-----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN  272 (948)
T ss_pred             ------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH-----hhHHHHHHHHHHhcCCchhhhhhcceEEEccC
Confidence                  11122221211 1123445666677777766544433     23467889999999999999999999988876


Q ss_pred             ccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514          260 SIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA  338 (533)
Q Consensus       260 ~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a  338 (533)
                      .....+       .....+++++. .+|-.++.-...-|..+...    -+.++ .|.+--+++++.+++-++|..++..
T Consensus       273 ~p~alk-------~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~----~~~il-~~l~mDvLrvLss~dldvr~Ktldi  340 (948)
T KOG1058|consen  273 DPTALK-------AAASTYIDLLVKESDNNVKLIVLDRLSELKAL----HEKIL-QGLIMDVLRVLSSPDLDVRSKTLDI  340 (948)
T ss_pred             CHHHHH-------HHHHHHHHHHHhccCcchhhhhHHHHHHHhhh----hHHHH-HHHHHHHHHHcCcccccHHHHHHHH
Confidence            633222       12334555553 34555555555555544421    12333 3666777888999999999999988


Q ss_pred             HHHhhccCChHhHHHHHHhhcHHHHHhhh--CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc
Q 009514          339 LRNLIFLAEDKCKEEIFMELTASLLASLI--CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK  416 (533)
Q Consensus       339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~  416 (533)
                      .-.|..+.+-   .+++.....+..-..=  .+.+.+.|..-+.++..++..-|+....       +++.+.+.+.+ .+
T Consensus       341 ~ldLvssrNv---ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aat-------vV~~ll~fisD-~N  409 (948)
T KOG1058|consen  341 ALDLVSSRNV---EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAAT-------VVSLLLDFISD-SN  409 (948)
T ss_pred             HHhhhhhccH---HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHH-------HHHHHHHHhcc-CC
Confidence            8777664331   1111111111110000  1234566777778888777665543222       56677777766 44


Q ss_pred             hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHhhcC
Q 009514          417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       417 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~-~~~~v~~~a~~~L~~l~~  481 (533)
                      +..-...+..+.......+..+..+++            .++..+.. ....+...|+|.++..+.
T Consensus       410 ~~aas~vl~FvrE~iek~p~Lr~~ii~------------~l~~~~~~irS~ki~rgalwi~GeYce  463 (948)
T KOG1058|consen  410 EAAASDVLMFVREAIEKFPNLRASIIE------------KLLETFPQIRSSKICRGALWILGEYCE  463 (948)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHH------------HHHHhhhhhcccccchhHHHHHHHHHh
Confidence            444444444444443334444444443            33333322 345677788888888885

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.039  Score=58.78  Aligned_cols=280  Identities=13%  Similarity=0.109  Sum_probs=156.6

Q ss_pred             CcHHHHHHhhh------cCCCCchhHHHHHHHHHHhhcc--chhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009514          186 NGVDKLYNHLQ------KGSLHPRRFEGILLALADMCSK--LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV  257 (533)
Q Consensus       186 ~~l~~L~~~L~------~~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~l  257 (533)
                      +.++.++++|.      .+..++..++.|++++++++..  .+..-+...+.-.++++...++++..-+|..|||.++.+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            34566677776      3334577889999999999842  111122344556788888888999999999999999999


Q ss_pred             hhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHH--hCcHHHHHHhhcCCCHHHHHH
Q 009514          258 SRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIR--LGGVKLLVQLSKSMDSTIRLN  334 (533)
Q Consensus       258 s~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~  334 (533)
                      +.-  +.... -.-...++.....|. +.+-.|+..|+-||..+..+.....+++..  -+.++.|..+.+.-+.+....
T Consensus       490 ~~~--df~d~-~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~  566 (1010)
T KOG1991|consen  490 SSI--DFKDP-NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN  566 (1010)
T ss_pred             Hhc--cCCCh-HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence            843  11111 122345556666666 778899999999999998766554443332  244555566665544343333


Q ss_pred             HHHHH-HHhhccCChHhHHHHHHhhcHHHHHhhhCC---C---ChhHHHHHHHHHHHhhcC---CcchHHHHHhh-cCch
Q 009514          335 ALRAL-RNLIFLAEDKCKEEIFMELTASLLASLICD---P---EPSVQEQALALVRNLVDG---RINSVEYIFAE-DGII  403 (533)
Q Consensus       335 al~aL-~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~---~---~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~-~~~~  403 (533)
                      .+..+ +.....-.| ....+. .......++++..   .   +.+=+..|.++|+.+..-   -.+. -.++.. .+.+
T Consensus       567 vme~iV~~fseElsP-fA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~-p~vl~~le~~~  643 (1010)
T KOG1991|consen  567 VMEKIVCKFSEELSP-FAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENH-PEVLKQLEPIV  643 (1010)
T ss_pred             HHHHHHHHHHHhhch-hHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHH
Confidence            33332 222221111 011111 1223445555542   1   223334555666554321   0111 112221 1224


Q ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          404 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       404 ~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      ++.+-..|.+ .-.++-+.++.+..+++.-.++ ....+        =++++.+.+.+++...+.-....-+|.|+..
T Consensus       644 l~vi~~iL~~-~i~dfyeE~~ei~~~~t~~~~~-Isp~m--------W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt  711 (1010)
T KOG1991|consen  644 LPVIGFILKN-DITDFYEELLEIVSSLTFLSKE-ISPIM--------WGLLELILEVFQDDGIDYFTDMMPALHNYVT  711 (1010)
T ss_pred             HHHHHHHHHH-hhHHHHHHHHHHHhhhhhhhcc-cCHHH--------HHHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence            5555555555 5567777777777776653321 12222        2455667777776666666677777777664

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.0048  Score=55.59  Aligned_cols=197  Identities=17%  Similarity=0.156  Sum_probs=117.6

Q ss_pred             chHHHHHHhcCCC--CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 009514          230 QVLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR  307 (533)
Q Consensus       230 ~~l~~l~~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~  307 (533)
                      ..+|.++..+.+.  .+.||..|..+|+++.            .....+.+-++.+++..++++.|..|+..+-......
T Consensus        67 ~Av~~l~~vl~desq~pmvRhEAaealga~~------------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIG------------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             hhhHHHHHHhcccccchHHHHHHHHHHHhhc------------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence            3566666666543  4566677777775543            1233445555556666666666666665553211100


Q ss_pred             H----HH--------HHHhCcHHHHHHhhcCCC-H-HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChh
Q 009514          308 R----ST--------FIRLGGVKLLVQLSKSMD-S-TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPS  373 (533)
Q Consensus       308 ~----~~--------~~~~~~i~~L~~ll~~~~-~-~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~  373 (533)
                      +    ..        -...+-+..+-..+.+.. + .-|..|...|.|+-.  +          ..+..+.+-+..++.-
T Consensus       135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E----------eaI~al~~~l~~~Sal  202 (289)
T KOG0567|consen  135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E----------EAINALIDGLADDSAL  202 (289)
T ss_pred             cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H----------HHHHHHHHhcccchHH
Confidence            0    00        011123444544443332 2 235667777777632  1          1245566666666777


Q ss_pred             HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhh
Q 009514          374 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENK  452 (533)
Q Consensus       374 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~  452 (533)
                      .|..+...++.|-...             .++.|.+.|... ..+.|+..|+.+|+.++.  +                .
T Consensus       203 frhEvAfVfGQl~s~~-------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e----------------~  251 (289)
T KOG0567|consen  203 FRHEVAFVFGQLQSPA-------------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E----------------D  251 (289)
T ss_pred             HHHHHHHHHhhccchh-------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H----------------H
Confidence            7777777776664321             466666666542 468999999999998873  2                2


Q ss_pred             hHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          453 AQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       453 ~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      .++.|.+++.++.+-+++.|..+|..+-+
T Consensus       252 ~~~vL~e~~~D~~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  252 CVEVLKEYLGDEERVVRESCEVALDMLEY  280 (289)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence            23577888999999999999999987765

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.67  E-value=0.0001  Score=50.65  Aligned_cols=55  Identities=24%  Similarity=0.167  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009514          287 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL  342 (533)
Q Consensus       287 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l  342 (533)
                      |.+|..|+++|++++...+...+. ....+++.|..+++++++.||.+|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999988766555444 4457899999999999999999999999875

...

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.47  E-value=0.0063  Score=64.00  Aligned_cols=167  Identities=13%  Similarity=0.166  Sum_probs=120.8

Q ss_pred             hcCCCHHHHHHHH-HHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 009514          324 SKSMDSTIRLNAL-RALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI  402 (533)
Q Consensus       324 l~~~~~~~~~~al-~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~  402 (533)
                      +.+.+...|..|+ ..+..+..+.+       + ....+.+++...+.|.+++.-.---|...+..+|+.  .++     
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d-------m-ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL-----   92 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED-------M-SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL-----   92 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC-------h-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH-----
Confidence            5555565566555 45566665443       1 112445556666788888888888888888887732  222     


Q ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCC
Q 009514          403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS  482 (533)
Q Consensus       403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~  482 (533)
                      +++.+.+-+++ +++.+|..|++.++.+-.      ..++        ..+++.+.+++.++++.||+.|+.|+.++=.-
T Consensus        93 avNti~kDl~d-~N~~iR~~AlR~ls~l~~------~el~--------~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l  157 (757)
T COG5096          93 AVNTIQKDLQD-PNEEIRGFALRTLSLLRV------KELL--------GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL  157 (757)
T ss_pred             HHHHHHhhccC-CCHHHHHHHHHHHHhcCh------HHHH--------HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence            56677777777 999999999999987642      2343        35668999999999999999999999988741


Q ss_pred             CCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          483 SSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       483 ~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                          .   ...+.+.|.+..+..++.|++|.|...|..+|..+-.
T Consensus       158 ----d---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         158 ----D---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             ----C---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence                1   2456678899999999999999999999888887643

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.46  E-value=0.027  Score=57.22  Aligned_cols=239  Identities=17%  Similarity=0.169  Sum_probs=150.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 009514          240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVVDFTTRRSTFIRL  314 (533)
Q Consensus       240 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~~~~~  314 (533)
                      ...++.+...|.+||+|+-...+..++. +.+.|+.+.++..|+..     +.++.-.....|.-++......+..+++.
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~-~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLSPSARQI-FVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE  120 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCCHHHHHH-HHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            3567899999999999998887777766 88999999999999754     78899899999888877666666566554


Q ss_pred             -CcHHHHHHhhcC-----------------CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHH----HHhhh-----
Q 009514          315 -GGVKLLVQLSKS-----------------MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL----LASLI-----  367 (533)
Q Consensus       315 -~~i~~L~~ll~~-----------------~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~----l~~lL-----  367 (533)
                       +++..+...+..                 .+......++..+-|++.+.+....  -.....++.    +.+++     
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~--~~~~~~~~~l~~il~~~l~~~~~  198 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP--EEFSPSIPHLVSILRRLLPPPPS  198 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc--hhhhHHHHHHHHHHHHHhccCCC
Confidence             667766654321                 0223455677777888654432111  011122333    33331     


Q ss_pred             CCCChhHHHHHHHHHHHhhcCCcch-------HHHHHhhcC--chHHHHHHHh----ccCCc---hhHHHHHHHHHHHhc
Q 009514          368 CDPEPSVQEQALALVRNLVDGRINS-------VEYIFAEDG--IILDAVGRQL----RIASK---AEIEIQGMYVLGNVA  431 (533)
Q Consensus       368 ~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~~~--~~~~~L~~~L----~~~~~---~~v~~~a~~~L~~l~  431 (533)
                      ..+.......++.+|.|+-..+.+.       ...+...+.  ..+..|+.+|    .....   .+.....+.+|.+++
T Consensus       199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~  278 (446)
T PF10165_consen  199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA  278 (446)
T ss_pred             CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence            1233567778888888874332111       000111111  1334444443    33221   245666788888888


Q ss_pred             cCChhhHHHHHHHhhHh---------hhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          432 TGKESHKEAVMDQLLLR---------AENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       432 ~~~~~~~~~~~~~~~~~---------~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      ..+...|+.+-..++|-         ....+-..|++++.++.+.+|..++..+..++.
T Consensus       279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            87666666655544331         123366789999999999999999999999984

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.46  E-value=0.0053  Score=51.57  Aligned_cols=132  Identities=13%  Similarity=0.205  Sum_probs=103.1

Q ss_pred             HhhhhhchHHHHHHhcCCCC------HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC--CHHHHHHHHH
Q 009514          224 SRCLSLQVLKLVVDALAHDS------SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT--STAVQVAALG  295 (533)
Q Consensus       224 ~~~~~~~~l~~l~~~L~~~~------~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~~  295 (533)
                      .+++..+|++.|++++.++.      .+....+..++..|-.+ +...+. ..+..++..++......  |+.+...|..
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence            45778899999999998765      35666677777777555 444555 67788899999988743  7899999999


Q ss_pred             HHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh
Q 009514          296 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME  357 (533)
Q Consensus       296 aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~  357 (533)
                      .|-+++..++.....+.+.=-++.|+..++.+++.++.+++..+..|....++..|+.+.+.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~  144 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAET  144 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            99999987766566666666789999999999999999999999999887766555555543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.45  E-value=0.16  Score=51.05  Aligned_cols=318  Identities=13%  Similarity=0.112  Sum_probs=158.4

Q ss_pred             CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhh-----HHHHHHhhhcCCHHHHHHHHHcCcH
Q 009514          114 RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDE-----ASFAFSSLIAEKEDMQKLAFEVNGV  188 (533)
Q Consensus       114 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~-----a~~~L~~l~~~~~~~~~~~~~~~~l  188 (533)
                      .++..|.+|++.|+.+-+..      .+    +.-.|++.+.++..++..     -..+...+...++.....     ..
T Consensus       202 ~~~isqYHalGlLyq~kr~d------km----a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q-----~r  266 (898)
T COG5240         202 GNPISQYHALGLLYQSKRTD------KM----AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQ-----LR  266 (898)
T ss_pred             CChHHHHHHHHHHHHHhccc------HH----HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHH-----HH
Confidence            34557999999988765532      22    344555666544333222     223333444444433221     12


Q ss_pred             HHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc--
Q 009514          189 DKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA--  266 (533)
Q Consensus       189 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~--  266 (533)
                      |.|-.+|.+..  ..+...+++++.+++..+  ....+. ...+..|-.+|++.....|..|.+.|..++...+..-.  
T Consensus       267 pfL~~wls~k~--emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc  341 (898)
T COG5240         267 PFLNSWLSDKF--EMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC  341 (898)
T ss_pred             HHHHHHhcCcc--hhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence            44445555432  446666777777776432  111121 24567777788899999999999999999865332100  


Q ss_pred             -hh---hh-h-cCc--HHHHHHhhcCCCH-------------------HHHHHHHHHHHHHhcCCchhHHHHHHhCcHHH
Q 009514          267 -GS---FM-N-ETI--VIPLVRLLDDTST-------------------AVQVAALGAISNIVVDFTTRRSTFIRLGGVKL  319 (533)
Q Consensus       267 -~~---~~-~-~~~--i~~Lv~lL~~~~~-------------------~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~  319 (533)
                       ..   ++ + ..-  .-++..+|+.+..                   ..+..+..++..|+..++..+..     .+.-
T Consensus       342 N~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s-----~l~F  416 (898)
T COG5240         342 NKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS-----YLDF  416 (898)
T ss_pred             ChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH-----HHHH
Confidence             00   00 0 000  1123333333322                   22333333333333333222211     1223


Q ss_pred             HHHhh-cCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHh
Q 009514          320 LVQLS-KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFA  398 (533)
Q Consensus       320 L~~ll-~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~  398 (533)
                      |...+ +.+.-+.+..++.++..+.... |+.|+..+     +.|..++.+.+..  +-++++|.-+..--|..     .
T Consensus       417 L~~~L~~eGg~eFK~~~Vdaisd~~~~~-p~skEraL-----e~LC~fIEDcey~--~I~vrIL~iLG~EgP~a-----~  483 (898)
T COG5240         417 LGSSLLQEGGLEFKKYMVDAISDAMEND-PDSKERAL-----EVLCTFIEDCEYH--QITVRILGILGREGPRA-----K  483 (898)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHhhC-chHHHHHH-----HHHHHHHhhcchh--HHHHHHHHHhcccCCCC-----C
Confidence            33222 2334556666666666665432 34444333     3344455444321  22233333332211110     0


Q ss_pred             hcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHh
Q 009514          399 EDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN  478 (533)
Q Consensus       399 ~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~  478 (533)
                      ..|..+..+...+-- .+.-|+.+|..+|..++...++.   +..       ..+...+.+.+.+.|.++|..|..++.+
T Consensus       484 ~P~~yvrhIyNR~iL-EN~ivRsaAv~aLskf~ln~~d~---~~~-------~sv~~~lkRclnD~DdeVRdrAsf~l~~  552 (898)
T COG5240         484 TPGKYVRHIYNRLIL-ENNIVRSAAVQALSKFALNISDV---VSP-------QSVENALKRCLNDQDDEVRDRASFLLRN  552 (898)
T ss_pred             CcchHHHHHHHHHHH-hhhHHHHHHHHHHHHhccCcccc---ccH-------HHHHHHHHHHhhcccHHHHHHHHHHHHh
Confidence            001133333332222 56789999999998888644321   111       2333577889999999999999999988


Q ss_pred             hc
Q 009514          479 LT  480 (533)
Q Consensus       479 l~  480 (533)
                      +-
T Consensus       553 ~~  554 (898)
T COG5240         553 MR  554 (898)
T ss_pred             hh
Confidence            76

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.40  E-value=0.0011  Score=51.30  Aligned_cols=93  Identities=19%  Similarity=0.204  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCc
Q 009514          420 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI  499 (533)
Q Consensus       420 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~  499 (533)
                      +..++..|..++.+-.......+        ..++|.+...+.++|+.||..|+.+|.+++...   ..+....  =..+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l--------~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~--f~~I   69 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL--------DEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPY--FNEI   69 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH--------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHH
Confidence            56778888887776655555555        467899999999999999999999999999521   1111111  2346


Q ss_pred             HHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          500 VSHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       500 ~~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                      ++.|.++..|+++.||..| +.|-++.
T Consensus        70 F~~L~kl~~D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   70 FDALCKLSADPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             HHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence            7899999999999999664 6666654

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.37  E-value=0.068  Score=54.32  Aligned_cols=267  Identities=16%  Similarity=0.128  Sum_probs=158.2

Q ss_pred             HHHHHHHhhccccccchhhhhcCcHHHHHHhh----------cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHH
Q 009514          251 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL----------DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLL  320 (533)
Q Consensus       251 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL----------~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L  320 (533)
                      +.+|+.++|.... ... +....++..|.++-          ..+++++..+|..+|+|+....+..++.+.+.|..+.+
T Consensus         2 L~~LRiLsRd~~~-~~~-l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRILSRDPTG-LDP-LFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHHHccCccc-chh-hccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            4567777777333 223 56666777777765          24688999999999999999998999999999999999


Q ss_pred             HHhhcCC-----CHHHHHHHHHHHHHhhccCChHhHHHHHHh-hcHHHHHhhhC----C-------------CChhHHHH
Q 009514          321 VQLSKSM-----DSTIRLNALRALRNLIFLAEDKCKEEIFME-LTASLLASLIC----D-------------PEPSVQEQ  377 (533)
Q Consensus       321 ~~ll~~~-----~~~~~~~al~aL~~l~~~~~~~~~~~i~~~-~~~~~l~~lL~----~-------------~~~~v~~~  377 (533)
                      +..++..     +.++.-...+.|-=++. ..++.+..+.+. ++++.+...|.    .             .+......
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa-~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E  158 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTA-LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE  158 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhc-CChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence            9998875     56667667777765554 344566666554 55555555441    1             13455667


Q ss_pred             HHHHHHHhhcCCcchHHHHHhhc-CchHHHHHHHh---c-cCCchhHHHHHHHHHHHhccCChhhHHHHHHHh-------
Q 009514          378 ALALVRNLVDGRINSVEYIFAED-GIILDAVGRQL---R-IASKAEIEIQGMYVLGNVATGKESHKEAVMDQL-------  445 (533)
Q Consensus       378 a~~~L~~l~~~~~~~~~~i~~~~-~~~~~~L~~~L---~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-------  445 (533)
                      ++.++-|+....+.......... ..++..+..++   . ..+......++..+|.|+--.+...   ++...       
T Consensus       159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~---l~~~~~~~~~~~  235 (446)
T PF10165_consen  159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDS---LLSPKFQQSSLF  235 (446)
T ss_pred             HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhh---hhcccCCccccc
Confidence            88888888866554332111110 01334444331   1 1133467788888888885322111   00000       


Q ss_pred             hHhhhhhhHHHHHHhhcc-----CC---hhHHHHHHHHHHhhcCCCCCCcHHHHHHHH----------------HCCcHH
Q 009514          446 LLRAENKAQSCIIKFLQS-----ND---SRLRTAAVWAVLNLTCSSSPGSSGRLVKLH----------------DAGIVS  501 (533)
Q Consensus       446 ~~~~~~~~~~~lv~~L~~-----~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~----------------~~g~~~  501 (533)
                      ....+...+..++++|..     .+   .+.-.....+|.+++..+    ....+++.                ......
T Consensus       236 ~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~----~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~  311 (446)
T PF10165_consen  236 PEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA----REVRKYLRARLLPPDKDRKKPPEKGDTLRS  311 (446)
T ss_pred             CCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc----HHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence            000012234455555432     11   134445555666666421    11122222                234557


Q ss_pred             HHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          502 HVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       502 ~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      .|+++++++.+.++..+..-|..+.+
T Consensus       312 rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  312 RLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHh
Confidence            89999998889999999988887754

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.34  E-value=0.0014  Score=50.62  Aligned_cols=92  Identities=23%  Similarity=0.222  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC
Q 009514          205 FEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD  284 (533)
Q Consensus       205 ~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~  284 (533)
                      |..++.+|++.+..-+.. -.-.-..++|+++..+.+++++||..||.+|.+++......--  ..-..+.+.|.+++.+
T Consensus         3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l--~~f~~IF~~L~kl~~D   79 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL--PYFNEIFDALCKLSAD   79 (97)
T ss_pred             hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcC
Confidence            456677777665432221 1111235899999999999999999999999999876322110  0124567778888899


Q ss_pred             CCHHHHHHHHHHHHHH
Q 009514          285 TSTAVQVAALGAISNI  300 (533)
Q Consensus       285 ~~~~v~~~a~~aL~nl  300 (533)
                      +++.|+..| ..|-++
T Consensus        80 ~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   80 PDENVRSAA-ELLDRL   94 (97)
T ss_pred             CchhHHHHH-HHHHHH
Confidence            999998777 444443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.34  E-value=0.021  Score=50.22  Aligned_cols=93  Identities=20%  Similarity=0.239  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHh
Q 009514          286 STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS  365 (533)
Q Consensus       286 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~  365 (533)
                      ++.+|..++-+++-++..++...     ...++.+...++++++.+|.+|+.+|.+|....--..+     ...+..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-----~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-----GQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-----hhhhHHHHH
Confidence            57899999999999997765433     35688999999999999999999999999764321111     122367778


Q ss_pred             hhCCCChhHHHHHHHHHHHhhcC
Q 009514          366 LICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       366 lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                      ++.|++++|+..|...+..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999866

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.27  E-value=0.27  Score=49.76  Aligned_cols=345  Identities=16%  Similarity=0.147  Sum_probs=181.1

Q ss_pred             HHHHHHhcCCCC----chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh
Q 009514          147 INNLLELLDDPG----RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC  222 (533)
Q Consensus       147 i~~L~~ll~~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~  222 (533)
                      +|.++..|.++.    .-......+|+.++...+-......  ..+.++.....+. .+......++.++..+.......
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~--~ll~kl~~~~~~~-~~~~~~~~il~tl~~~~~~~~~~   77 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI--RLLNKLSIVCQSE-SSSDYCHAILSTLQSLLEKKQED   77 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH--HHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhcccc
Confidence            366777776432    3346677888888765544322221  2233333333322 23455566677777665433222


Q ss_pred             h-----HhhhhhchHHHHHHhcCC-----C--CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-------
Q 009514          223 R-----SRCLSLQVLKLVVDALAH-----D--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-------  283 (533)
Q Consensus       223 ~-----~~~~~~~~l~~l~~~L~~-----~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-------  283 (533)
                      .     ....+..++|.+.+....     .  ++.+...+...+..+.+..+....     ...+..++.+..       
T Consensus        78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q-----~~~~~~~~~lf~~~~~~~~  152 (415)
T PF12460_consen   78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ-----QEILDELYSLFLSPKSFSP  152 (415)
T ss_pred             cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHHccccccCC
Confidence            2     111222367777776531     1  255666666666666555333222     233445555432       


Q ss_pred             ---C------CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCCh-HhHH
Q 009514          284 ---D------TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAED-KCKE  352 (533)
Q Consensus       284 ---~------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~~-~~~~  352 (533)
                         +      .......-...+++.+-.+..-  .  -....+..++.+..+ .++..|..++..++.++.--.. +.-+
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~--~--~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~  228 (415)
T PF12460_consen  153 FQPSSSTISEQQSRLVILFSAILCSLRKDVSL--P--DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD  228 (415)
T ss_pred             CCccccccccccccHHHHHHHHHHcCCcccCc--c--CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH
Confidence               1      1112223333444443322110  0  111356677766544 4577888888888887643211 1111


Q ss_pred             HHHHhhcHHHHHhhh-CCCChhHHHH----HHHHHHHhh-cCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHH
Q 009514          353 EIFMELTASLLASLI-CDPEPSVQEQ----ALALVRNLV-DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV  426 (533)
Q Consensus       353 ~i~~~~~~~~l~~lL-~~~~~~v~~~----a~~~L~~l~-~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~  426 (533)
                      .+     ++.+..-+ ...+...+..    ..|....+. .+++...        .+++.|..+|.+   +++...++..
T Consensus       229 ~~-----l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~--------~~~~~L~~lL~~---~~~g~~aA~~  292 (415)
T PF12460_consen  229 EF-----LDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT--------ELLDKLLELLSS---PELGQQAAKA  292 (415)
T ss_pred             HH-----HHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH--------HHHHHHHHHhCC---hhhHHHHHHH
Confidence            11     22222222 2233333333    334444443 3332211        145556566654   6666777777


Q ss_pred             HHHhccCChh-------------hHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514          427 LGNVATGKES-------------HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK  493 (533)
Q Consensus       427 L~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  493 (533)
                      ++-+....++             .++.++        ..++|.+++..+..+...|.....+|+.+..    ..+..+-.
T Consensus       293 f~il~~d~~~~l~~~~~a~vklLykQR~F--------~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~----~vP~~vl~  360 (415)
T PF12460_consen  293 FGILLSDSDDVLNKENHANVKLLYKQRFF--------TQVLPKLLEGFKEADDEIKSNYLTALSHLLK----NVPKSVLL  360 (415)
T ss_pred             HhhHhcCcHHhcCccccchhhhHHhHHHH--------HHHHHHHHHHHhhcChhhHHHHHHHHHHHHh----hCCHHHHH
Confidence            7666654221             234444        3577899999888887789999999999985    22222111


Q ss_pred             HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhccc
Q 009514          494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS  531 (533)
Q Consensus       494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~~  531 (533)
                      -.-..++|.|.+-|+-++.+++..+...|..+.+..+.
T Consensus       361 ~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  361 PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence            11123678888888888888999898988888766543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.22  E-value=0.044  Score=48.17  Aligned_cols=92  Identities=17%  Similarity=0.270  Sum_probs=72.4

Q ss_pred             chhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh
Q 009514          202 PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL  281 (533)
Q Consensus       202 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l  281 (533)
                      +.+|-+++.+++.++..-+..-     ...+|.+...|.++++.||..|..+|..|... +..+    ....++..++.+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik----~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIK----VKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Ccee----ehhhhhHHHHHH
Confidence            6688999999999986544322     24688999999999999999999999999765 2222    122334778888


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcC
Q 009514          282 LDDTSTAVQVAALGAISNIVVD  303 (533)
Q Consensus       282 L~~~~~~v~~~a~~aL~nl~~~  303 (533)
                      +.+++++++..|...+..+...
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            8999999999999999998864

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.22  E-value=0.00098  Score=42.40  Aligned_cols=38  Identities=34%  Similarity=0.446  Sum_probs=34.6

Q ss_pred             hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514          306 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  343 (533)
Q Consensus       306 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~  343 (533)
                      +.+..+.+.|+++.|+++++++++.++..++|+|.|++
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            35678889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.22  E-value=0.0076  Score=50.64  Aligned_cols=121  Identities=17%  Similarity=0.192  Sum_probs=97.4

Q ss_pred             hhhcCcHHHHHHhhcCCC------HHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC--CHHHHHHHHHHHH
Q 009514          269 FMNETIVIPLVRLLDDTS------TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALR  340 (533)
Q Consensus       269 ~~~~~~i~~Lv~lL~~~~------~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~al~aL~  340 (533)
                      |+..+|+..|+++++++.      .+....++.++..|... +.......+..-|..++.+....  +..+.+.|+..|-
T Consensus         7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE   85 (160)
T PF11841_consen    7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE   85 (160)
T ss_pred             HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence            778899999999998654      47788899999999864 33344566666778888877653  5788999999999


Q ss_pred             HhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514          341 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN  391 (533)
Q Consensus       341 ~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~  391 (533)
                      +++.+ ++.....+.++-.++.|+.+|..+++++|.+++..+..+....++
T Consensus        86 s~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   86 SIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99874 466677888888899999999999999999999888888765443

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.39  Score=50.26  Aligned_cols=54  Identities=15%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          415 SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       415 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      .+..++.+|..+|.++..+++..+..+.            ..+.+++.+.|.++|..|..++.++.
T Consensus       478 En~ivRaaAv~alaKfg~~~~~l~~sI~------------vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  478 ENAIVRAAAVSALAKFGAQDVVLLPSIL------------VLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhHHHHHHHHHHHhcCCCCccccHH------------HHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            5678999999999999977765554443            57888999999999999999999887

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.16  E-value=0.00092  Score=42.55  Aligned_cols=39  Identities=18%  Similarity=0.211  Sum_probs=35.1

Q ss_pred             hhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514          221 CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  259 (533)
Q Consensus       221 ~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~  259 (533)
                      +.+..+.+.|+++.|++++++++++++..++++|+|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            366778899999999999999999999999999999863

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.034  Score=57.25  Aligned_cols=155  Identities=15%  Similarity=0.171  Sum_probs=97.7

Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh-hCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc
Q 009514          322 QLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVEYIFAED  400 (533)
Q Consensus       322 ~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  400 (533)
                      +++.+.++-+|.....++.---.+.++        .+.+..|+.. .+|.+.+|+..|..+|+-+++.+|+.        
T Consensus       526 el~~dkdpilR~~Gm~t~alAy~GTgn--------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--------  589 (929)
T KOG2062|consen  526 ELLRDKDPILRYGGMYTLALAYVGTGN--------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--------  589 (929)
T ss_pred             HHhcCCchhhhhhhHHHHHHHHhccCc--------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--------
Confidence            555666677777666555422111211        1345666665 67899999999999999999988762        


Q ss_pred             CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          401 GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       401 ~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                         .+-.+++|..+-++.|+..++.+|+=.+.|.-. ... +            ..|-.+..++..-||..|+-++..+.
T Consensus       590 ---~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eA-i------------~lLepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  590 ---LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEA-I------------NLLEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             ---chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHH-H------------HHHhhhhcChHHHHHHHHHHHHHHHH
Confidence               334446666668899999999999977776531 221 1            23334455677779999998888777


Q ss_pred             CCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcH
Q 009514          481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV  514 (533)
Q Consensus       481 ~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v  514 (533)
                      .-..+..-.+.     .|+.+.+.+...+..++.
T Consensus       653 ~Q~t~~~~pkv-----~~frk~l~kvI~dKhEd~  681 (929)
T KOG2062|consen  653 IQQTEQLCPKV-----NGFRKQLEKVINDKHEDG  681 (929)
T ss_pred             HhcccccCchH-----HHHHHHHHHHhhhhhhHH
Confidence            42221111111     234466666666555553

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.64  Score=51.07  Aligned_cols=224  Identities=16%  Similarity=0.182  Sum_probs=130.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCchhHHHHHH--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHH
Q 009514          284 DTSTAVQVAALGAISNIVVDFTTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS  361 (533)
Q Consensus       284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~  361 (533)
                      +.+..+|..+...|..++.. +.......+  ..+.+.+..-+++.....+...+.+|..+....+.+. ...+.....+
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~-~~~i~k~I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEH-CDLIPKLIPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHH
Confidence            55899999999999999875 222212111  1334455555666677788888888888876554322 3334444455


Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHhhc--CCc----chHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCCh
Q 009514          362 LLASLICDPEPSVQEQALALVRNLVD--GRI----NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE  435 (533)
Q Consensus       362 ~l~~lL~~~~~~v~~~a~~~L~~l~~--~~~----~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~  435 (533)
                      .++.+ ++.+..-+..+..+|..++.  ...    +.....+++   ++..+..-+.. ..+.+....+.++..+.....
T Consensus       743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne---fl~~Isagl~g-d~~~~~as~Ivai~~il~e~~  817 (1176)
T KOG1248|consen  743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE---FLSIISAGLVG-DSTRVVASDIVAITHILQEFK  817 (1176)
T ss_pred             HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH---HHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHh
Confidence            66655 88899999999999988872  110    001122221   23333322222 222233332444444443221


Q ss_pred             hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHH
Q 009514          436 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK  515 (533)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~  515 (533)
                      ...+.-.-       .+++..+..+|.++.++++..|+.++..++.    ..++-...-....+++.+..++++....++
T Consensus       818 ~~ld~~~l-------~~li~~V~~~L~s~sreI~kaAI~fikvlv~----~~pe~~l~~~~~~LL~sll~ls~d~k~~~r  886 (1176)
T KOG1248|consen  818 NILDDETL-------EKLISMVCLYLASNSREIAKAAIGFIKVLVY----KFPEECLSPHLEELLPSLLALSHDHKIKVR  886 (1176)
T ss_pred             ccccHHHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----cCCHHHHhhhHHHHHHHHHHHHHhhhHHHH
Confidence            11111110       3455666677889999999999999999995    222222222233367788888876666777


Q ss_pred             HHHHHHHHHH
Q 009514          516 LRVKTALEQF  525 (533)
Q Consensus       516 ~~a~~aL~~~  525 (533)
                      .++..-|..+
T Consensus       887 ~Kvr~LlekL  896 (1176)
T KOG1248|consen  887 KKVRLLLEKL  896 (1176)
T ss_pred             HHHHHHHHHH
Confidence            7776666665

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.08  E-value=0.56  Score=49.91  Aligned_cols=164  Identities=17%  Similarity=0.177  Sum_probs=101.7

Q ss_pred             hcCCCcchhHHHHH-HHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCccc
Q 009514           26 LNNESENVSGLGAS-IISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT  103 (533)
Q Consensus        26 L~~~~~~v~~~a~~-~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~  103 (533)
                      +.+.++..+..|.+ +|+.+....+-..      ..+.+++.... +..++.-.-.=|-..++.+|+..  +      -.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l------La   93 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--L------LA   93 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H------HH
Confidence            45555555555544 6666654433111      22233333332 33444444333444455555432  1      24


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHH
Q 009514          104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLA  182 (533)
Q Consensus       104 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~  182 (533)
                      +..+.+-++++++.+|..|.+.+..+-.        .-+...+++++.+++.+ .+.+|..|+.++.++-.-+...   .
T Consensus        94 vNti~kDl~d~N~~iR~~AlR~ls~l~~--------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~  162 (757)
T COG5096          94 VNTIQKDLQDPNEEIRGFALRTLSLLRV--------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---Y  162 (757)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHhcCh--------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---h
Confidence            5667778889999999999998876433        23445689999999986 4789999999999997665443   3


Q ss_pred             HHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhh
Q 009514          183 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMC  216 (533)
Q Consensus       183 ~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~  216 (533)
                      .+.|.+..+..++.+.  +|.+..+|+.++..+.
T Consensus       163 ~~~g~~~~l~~l~~D~--dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         163 HELGLIDILKELVADS--DPIVIANALASLAEID  194 (757)
T ss_pred             hcccHHHHHHHHhhCC--CchHHHHHHHHHHHhc
Confidence            3455566666655554  4888888888888764

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.08  E-value=0.003  Score=48.87  Aligned_cols=68  Identities=13%  Similarity=0.163  Sum_probs=58.0

Q ss_pred             hhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh
Q 009514          161 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS  228 (533)
Q Consensus       161 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~  228 (533)
                      +.....++++++..++..+..+.+.||+|.+++...-...+|-++|.|++++.+|+.++++++..+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            45677899999999999999999999999999876555567899999999999999998888765543

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.04  E-value=0.13  Score=52.72  Aligned_cols=301  Identities=14%  Similarity=0.106  Sum_probs=145.4

Q ss_pred             HHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhh
Q 009514           62 RLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG  141 (533)
Q Consensus        62 ~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  141 (533)
                      .++...+++...+.-|..-+.....+-|+..        ...+..++.++.+++..||..|.+-|..+++.++.+.    
T Consensus        27 ~il~~~kg~~k~K~Laaq~I~kffk~FP~l~--------~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v----   94 (556)
T PF05918_consen   27 EILDGVKGSPKEKRLAAQFIPKFFKHFPDLQ--------EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV----   94 (556)
T ss_dssp             HHHHGGGS-HHHHHHHHHHHHHHHCC-GGGH--------HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H----
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHhhChhhH--------HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH----
Confidence            3455556778888889889998888888775        3578899999999999999999999999999765432    


Q ss_pred             hHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhc-CCCCchhHHHHHHHHHHhhcc-
Q 009514          142 IKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK-GSLHPRRFEGILLALADMCSK-  218 (533)
Q Consensus       142 ~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~~~~~~~a~~aL~~l~~~-  218 (533)
                        ..+...|+++|..+ +.-...+-.+|..+...++.        +.+..+...+.. .+.+..+|+.++..|..-... 
T Consensus        95 --~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l  164 (556)
T PF05918_consen   95 --SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPL  164 (556)
T ss_dssp             --HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS
T ss_pred             --hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhC
Confidence              36788999999843 33334455666666554443        224444444431 112456888888777532221 


Q ss_pred             chhhhH--hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh------cCCCHHHH
Q 009514          219 LECCRS--RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL------DDTSTAVQ  290 (533)
Q Consensus       219 ~~~~~~--~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL------~~~~~~v~  290 (533)
                      ..+.-.  .-.+.-++..+-+.|++-...=-.....+|..+..- ...... -.....++.+.+..      ...|++..
T Consensus       165 ~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~-~~~~t~-~g~qeLv~ii~eQa~Ld~~f~~sD~e~I  242 (556)
T PF05918_consen  165 KPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIY-GGKQTI-EGRQELVDIIEEQADLDQPFDPSDPESI  242 (556)
T ss_dssp             -TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG----GSSH-HHHHHHHHHHHHHHTTTS---SSSHHHH
T ss_pred             cHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccc-cccCCh-HHHHHHHHHHHHHhccCCCCCCcCHHHH
Confidence            111111  112233555666677653322122223444443220 000000 00111222233222      12355555


Q ss_pred             HHHHHHHHHHhcCCc------hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHH
Q 009514          291 VAALGAISNIVVDFT------TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLA  364 (533)
Q Consensus       291 ~~a~~aL~nl~~~~~------~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~  364 (533)
                      ..-..++..-.-.+.      .....+. ..++|.+-.+    .+..+..-+.++..++...........+. ..++.|.
T Consensus       243 drli~C~~~Alp~fs~~v~Sskfv~y~~-~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~L~  316 (556)
T PF05918_consen  243 DRLISCLRQALPFFSRGVSSSKFVNYMC-EKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQLLK  316 (556)
T ss_dssp             HHHHHHHHHHGGG-BTTB--HHHHHHHH-HHTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHhhHHhcCCCChHHHHHHHH-HHhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHHHH
Confidence            555554433211111      1111222 2344433333    44667778888888876554322333331 2234444


Q ss_pred             hhhCC--C----ChhHHHHHHHHHHHhhcCCcch
Q 009514          365 SLICD--P----EPSVQEQALALVRNLVDGRINS  392 (533)
Q Consensus       365 ~lL~~--~----~~~v~~~a~~~L~~l~~~~~~~  392 (533)
                      ..+-.  .    +....+..+.++.+|+...|+.
T Consensus       317 ~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~  350 (556)
T PF05918_consen  317 KYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNS  350 (556)
T ss_dssp             TTS----------HHHHHHHHHHHHHHHTT-THH
T ss_pred             HhCCCCCCCCcccchHhhHHHHHHHHHhhhCcch
Confidence            43321  1    2345667777778888776653

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.03  E-value=0.045  Score=50.82  Aligned_cols=234  Identities=9%  Similarity=0.057  Sum_probs=136.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHHHHHH-
Q 009514          237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTFIR-  313 (533)
Q Consensus       237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-  313 (533)
                      ++++.-++..|.-|..|+.++.... ..|.....+..+-..++.+++.  .+..+|+..+-++..++.. +.+.+.+-+ 
T Consensus       156 kl~Q~i~~lTrlfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~  233 (432)
T COG5231         156 KLSQLIDFLTRLFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKM  233 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence            3444455667888899999987663 3333312445566678888874  4689999999999988853 333322221 


Q ss_pred             hCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC---CChhHHHHHHH---------
Q 009514          314 LGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD---PEPSVQEQALA---------  380 (533)
Q Consensus       314 ~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~---~~~~v~~~a~~---------  380 (533)
                      ...+.-++++.+.. ...+-+-++..+.|++...+...-...+-.+.+..-++.|..   +|.+++...-.         
T Consensus       234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~  313 (432)
T COG5231         234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT  313 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence            24566666766643 345666677777787763321121222222323333333321   23322221111         


Q ss_pred             --------HHHHh----hcCCcc---------hHHHHHhhcCchHHHHHHHhccCCchh-HHHHHHHHHHHhccCChhhH
Q 009514          381 --------LVRNL----VDGRIN---------SVEYIFAEDGIILDAVGRQLRIASKAE-IEIQGMYVLGNVATGKESHK  438 (533)
Q Consensus       381 --------~L~~l----~~~~~~---------~~~~i~~~~~~~~~~L~~~L~~~~~~~-v~~~a~~~L~~l~~~~~~~~  438 (533)
                              -+..+    .+.+|.         .+..+.+..-.++..|.++++. ..+. +-.-||.-|..+....|+.+
T Consensus       314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~-n~~nt~i~vAc~Di~~~Vr~~PE~~  392 (432)
T COG5231         314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQS-NNPNTWICVACSDIFQLVRASPEIN  392 (432)
T ss_pred             hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhc-CCCCceEeeeHhhHHHHHHhCchHH
Confidence                    11111    111211         1112222111266777788887 4443 55667888888888777766


Q ss_pred             HHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          439 EAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      ..+..       .|+-..++++++++|++|+.+|..++..+.
T Consensus       393 ~vl~K-------yg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         393 AVLSK-------YGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHH-------hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            65554       788899999999999999999999987765

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.94  E-value=0.2  Score=48.26  Aligned_cols=188  Identities=21%  Similarity=0.216  Sum_probs=109.6

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHH---hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC-hHhHHH
Q 009514          278 LVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR---LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE-DKCKEE  353 (533)
Q Consensus       278 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~---~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~-~~~~~~  353 (533)
                      .+..+.+.....|+.++..+.++......  ..++.   .-.+..+.+.++.+..+-+.-|+.++.-++...+ ......
T Consensus        48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~--~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   48 AIDLLTEKSSSTREAALEALIRALSSRYL--PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence            34444566788999999999887753321  12222   2356667777777665556667676666654322 123445


Q ss_pred             HHHhhcHHHHHhhhCCCC--hhHHHHHHHHHHHh---hcCCcchHHHHHhhcCchHHHHH--HHhccCC---------ch
Q 009514          354 IFMELTASLLASLICDPE--PSVQEQALALVRNL---VDGRINSVEYIFAEDGIILDAVG--RQLRIAS---------KA  417 (533)
Q Consensus       354 i~~~~~~~~l~~lL~~~~--~~v~~~a~~~L~~l---~~~~~~~~~~i~~~~~~~~~~L~--~~L~~~~---------~~  417 (533)
                      +++. ..+.|.+.+.++.  .+++..++.+|+-+   +..+++.+...++    .++.+.  ....+++         ++
T Consensus       126 i~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~----~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  126 IFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME----SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH----HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            5554 4678888887654  45666666566544   3444444443333    333221  1222211         24


Q ss_pred             hHHHHHHHHHHHhccCChh-hHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          418 EIEIQGMYVLGNVATGKES-HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       418 ~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      .+...|+.+-+-+.+.-+. ......        ...+|.|..+|.+++.+||.+|..+|.-+-
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~--------~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLL--------EEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            5666666555545543332 233333        356799999999999999999998887554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.91  E-value=0.15  Score=47.42  Aligned_cols=233  Identities=18%  Similarity=0.217  Sum_probs=134.6

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhccCChHhHHHHHHh-hc
Q 009514          283 DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKEEIFME-LT  359 (533)
Q Consensus       283 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~-~~  359 (533)
                      +.-++-.+..|..++.++........-...+...-..++++++.  .+..++.+++..+.-++.  ++.+.+.+-.- ..
T Consensus       159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf--~~~~aqdi~K~~dl  236 (432)
T COG5231         159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF--SKECAQDIDKMDDL  236 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--CHHHHHHHHHHHHH
Confidence            33345578899999999987554433333444444566776664  345678888888877765  34455333221 12


Q ss_pred             HHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcch-HHHHHhhcCchHHHHHHHhcc-CCchhH---------------HH
Q 009514          360 ASLLASLIC-DPEPSVQEQALALVRNLVDGRINS-VEYIFAEDGIILDAVGRQLRI-ASKAEI---------------EI  421 (533)
Q Consensus       360 ~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~~~~~~L~~~L~~-~~~~~v---------------~~  421 (533)
                      +.-++.+.+ ....+|..-+++++.|+++..|.. +....-.+. +.+....++.. ..+.++               ++
T Consensus       237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~  315 (432)
T COG5231         237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK  315 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            344455554 345678888999999999854432 222222221 11111111110 011111               11


Q ss_pred             HHHH--HHHHhccC----Ch---------hhHHHHHHHhhHhhhhhhHHHHHHhhccCChh-HHHHHHHHHHhhcCCCCC
Q 009514          422 QGMY--VLGNVATG----KE---------SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR-LRTAAVWAVLNLTCSSSP  485 (533)
Q Consensus       422 ~a~~--~L~~l~~~----~~---------~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~-v~~~a~~~L~~l~~~~~~  485 (533)
                      -+.+  -+..+-+|    +|         ...+.+.+.     +..++..|..++++.+++ ...-||.=|..+..    
T Consensus       316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd-----ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr----  386 (432)
T COG5231         316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKD-----NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVR----  386 (432)
T ss_pred             hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhh-----hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHH----
Confidence            1111  01111111    11         123333332     356788999999987765 23345555555553    


Q ss_pred             CcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          486 GSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       486 ~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      ..++....+.+-|+-+.+.+|++.++++|+..|..|++.+..
T Consensus       387 ~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         387 ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            456777889999999999999999999999999999988753

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.90  E-value=0.0052  Score=47.56  Aligned_cols=65  Identities=23%  Similarity=0.345  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh--CCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514          331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI--CDPEPSVQEQALALVRNLVDGRINSVEYI  396 (533)
Q Consensus       331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  396 (533)
                      +|...++.++|+++. .+..++.+.+.++++.++...  ++.+|-++++|+++++|++.++++..+.+
T Consensus         2 ~K~~lvrlianl~~~-~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I   68 (102)
T PF09759_consen    2 FKRDLVRLIANLCYK-NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI   68 (102)
T ss_pred             cHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            366778899999974 577899999999999999875  46789999999999999999987654433

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.90  E-value=0.48  Score=50.40  Aligned_cols=245  Identities=13%  Similarity=0.088  Sum_probs=142.7

Q ss_pred             CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHH
Q 009514          158 GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD  237 (533)
Q Consensus       158 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~  237 (533)
                      +.+-..+.+.+...+........ +.. -.+...+..+.-. .++-++..|++++...++..  . -.-...+++..+.+
T Consensus       464 P~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~-~~~~~ki~a~~~~~~~~~~~--v-l~~~~p~ild~L~q  537 (1005)
T KOG2274|consen  464 PFLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMD-VPPPVKISAVRAFCGYCKVK--V-LLSLQPMILDGLLQ  537 (1005)
T ss_pred             HHHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccC-CCCchhHHHHHHHHhccCce--e-ccccchHHHHHHHH
Confidence            33334666666665543222111 000 1123334434333 34557788888887776321  1 01113357777888


Q ss_pred             hcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh--cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhC
Q 009514          238 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL--DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG  315 (533)
Q Consensus       238 ~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL--~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~  315 (533)
                      +....+.++--.-..+|+..+.-.+....  ..++.+.|-.+.+.  .++||-+...+-.++-.++.. ..+. .-...-
T Consensus       538 las~~s~evl~llmE~Ls~vv~~dpef~a--s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~-g~m~e~  613 (1005)
T KOG2274|consen  538 LASKSSDEVLVLLMEALSSVVKLDPEFAA--SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANY-GPMQER  613 (1005)
T ss_pred             HcccccHHHHHHHHHHHHHHhccChhhhh--hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhh-cchHHH
Confidence            87777888888888888888665343322  24566666666554  366777766666666555531 1111 122245


Q ss_pred             cHHHHHHhhcCCC----HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh-hCCCChhHHHHHHHHHHHhhcCCc
Q 009514          316 GVKLLVQLSKSMD----STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRI  390 (533)
Q Consensus       316 ~i~~L~~ll~~~~----~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-L~~~~~~v~~~a~~~L~~l~~~~~  390 (533)
                      .||.+++.+..++    .....-++..|..+.++.++...+.+... ..+.+.+. +.++|......+-.+|+.+....+
T Consensus       614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            7899999998765    55667788888888877766555555443 35555554 466778888899999999887755


Q ss_pred             chHHHHHhhcCc----hHHHHHHHhcc
Q 009514          391 NSVEYIFAEDGI----ILDAVGRQLRI  413 (533)
Q Consensus       391 ~~~~~i~~~~~~----~~~~L~~~L~~  413 (533)
                      +.+..--.++|.    +|+.+.++|..
T Consensus       693 eq~~t~~~e~g~~~~yImqV~sqLLdp  719 (1005)
T KOG2274|consen  693 EQLLTWHDEPGHNLWYIMQVLSQLLDP  719 (1005)
T ss_pred             HHHHhhccCCCccHHHHHHHHHHHcCC
Confidence            433332223332    55666665553

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.84  E-value=0.088  Score=55.04  Aligned_cols=242  Identities=17%  Similarity=0.195  Sum_probs=156.6

Q ss_pred             hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHH-HHHHHHHHHHHhhccCC
Q 009514          269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST-IRLNALRALRNLIFLAE  347 (533)
Q Consensus       269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~-~~~~al~aL~~l~~~~~  347 (533)
                      .+..|+...|+.+.....++.+.....+|..-. +++..+    ....++.+...++..... -...++.++.||+..+ 
T Consensus       500 ~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i-~f~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s-  573 (748)
T KOG4151|consen  500 KIKPGGYEALLRLGQQQFEEAKLKWYHALAGKI-DFPGER----SYEVVKPLDSALHNDEKGLENFEALEALTNLASIS-  573 (748)
T ss_pred             cccccHHHHHHHHHHHhchHHHHHHHHHHhhhc-CCCCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcc-
Confidence            578899999999998777888888888887211 122111    124566666666544322 2446889999987644 


Q ss_pred             hHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHH
Q 009514          348 DKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVL  427 (533)
Q Consensus       348 ~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L  427 (533)
                      ...|+++..+.+.+-+-.++.+.++..|..++..+.||..+.. .++..+-++..-++.....+.. .......+++.++
T Consensus       574 ~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~-~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~  651 (748)
T KOG4151|consen  574 ESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL-LYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGAL  651 (748)
T ss_pred             hhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH-HHHHHhhccccCchHHHHHHHh-hhhHHhhhccccc
Confidence            4567778888888888888889999999999999999987632 2333222221112222222333 4455666677776


Q ss_pred             HHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhh
Q 009514          428 GNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV  507 (533)
Q Consensus       428 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll  507 (533)
                      ..++.-.+.++..+.+      .......++..+.+.++.++.-....+.|+..    +..+....+.+...++.+..+-
T Consensus       652 a~I~sv~~n~c~~~~~------~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~----~~~ei~~~~~~~~~~~~l~~~~  721 (748)
T KOG4151|consen  652 AAITSVVENHCSRILE------LLEWLEILVRAIQDEDDEIQHRGLVIILNLFE----ALFEIAEKIFETEVMELLSGLQ  721 (748)
T ss_pred             cchhhcchhhhhhHHH------hhcchHHHHHhhcCchhhhhhhhhhhhhhHHH----HHHHHHHHhccchHHHHHHHHH
Confidence            6666655544443222      13344678889999999999999999999553    4556667777777777776665


Q ss_pred             cCCCCcHHHHHHHHHHHHhhh
Q 009514          508 NDPCLDVKLRVKTALEQFNSF  528 (533)
Q Consensus       508 ~~~~~~v~~~a~~aL~~~~~~  528 (533)
                      .-.-...++.+...|.-+.++
T Consensus       722 ~~~~a~~~~~~~~~l~~a~~~  742 (748)
T KOG4151|consen  722 KLNRAPKREDAAPCLSAAEEY  742 (748)
T ss_pred             HhhhhhhhhhhhhHHHHHHHh
Confidence            433344556666666555443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.75  E-value=1.3  Score=48.87  Aligned_cols=132  Identities=15%  Similarity=0.143  Sum_probs=101.7

Q ss_pred             HHHHHhhhC----CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCCh
Q 009514          360 ASLLASLIC----DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE  435 (533)
Q Consensus       360 ~~~l~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~  435 (533)
                      .|.++++.+    .++|++|..|.-+|..+.+-+.+    +...   -++.|...+..++++-|+.++.-+++.++...+
T Consensus       921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces---~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCES---HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHH---HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            466666663    46799999999999888754321    2222   468888888877999999999999999998665


Q ss_pred             hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHH
Q 009514          436 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK  515 (533)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~  515 (533)
                      ...+.            .-+.+...|++.++.||+.|...|+.|.-+         ..+.-.|.++.+...+.|+++.++
T Consensus       994 nlie~------------~T~~Ly~rL~D~~~~vRkta~lvlshLILn---------dmiKVKGql~eMA~cl~D~~~~Is 1052 (1251)
T KOG0414|consen  994 NLIEP------------WTEHLYRRLRDESPSVRKTALLVLSHLILN---------DMIKVKGQLSEMALCLEDPNAEIS 1052 (1251)
T ss_pred             cccch------------hhHHHHHHhcCccHHHHHHHHHHHHHHHHh---------hhhHhcccHHHHHHHhcCCcHHHH
Confidence            43332            236788999999999999999999999952         234457888899999999888888


Q ss_pred             HHHH
Q 009514          516 LRVK  519 (533)
Q Consensus       516 ~~a~  519 (533)
                      .-|.
T Consensus      1053 dlAk 1056 (1251)
T KOG0414|consen 1053 DLAK 1056 (1251)
T ss_pred             HHHH
Confidence            7776

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.60  E-value=0.53  Score=45.30  Aligned_cols=195  Identities=19%  Similarity=0.164  Sum_probs=111.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH--hhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC--Ccch
Q 009514          317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLICDPEPSVQEQALALVRNLVDG--RINS  392 (533)
Q Consensus       317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~  392 (533)
                      +...+..+.......|..++..+.++....-  ..+.+.+  .-.++.+.+.++.+..+-+..|+.++.-++-.  ....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~--~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRY--LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence            3344455555668889999999988765321  1222222  12467777888777666777777777666543  2234


Q ss_pred             HHHHHhhcCchHHHHHHHhccCC-chhHHHHHHHHHHHhcc---CChhhHHHHHHHhhHhhhhhhHH--HHHHhhcc---
Q 009514          393 VEYIFAEDGIILDAVGRQLRIAS-KAEIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQS--CIIKFLQS---  463 (533)
Q Consensus       393 ~~~i~~~~~~~~~~L~~~L~~~~-~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~~~~~~~--~lv~~L~~---  463 (533)
                      ...++..   +.+.|.+.+.+.. .+.++..++.+|+-++.   ...+.....++         .+.  ......+.   
T Consensus       123 ~~ei~~~---~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---------~le~if~~~~~~~~~~  190 (309)
T PF05004_consen  123 SEEIFEE---LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---------SLESIFLLSILKSDGN  190 (309)
T ss_pred             HHHHHHH---HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---------HHHHHHHHHhcCcCCC
Confidence            5566654   5677777777632 34566666666655433   33333332222         112  12222221   


Q ss_pred             -------CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          464 -------NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       464 -------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                             +++.+..+|+.+-+-|...   -......... ...++.|..+|++++.+||..|..+|.-+.+.+
T Consensus       191 ~~~~~~~~~~~l~~aAL~aW~lLlt~---~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  191 APVVAAEDDAALVAAALSAWALLLTT---LPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             cccccCCCccHHHHHHHHHHHHHHhc---CCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence                   1245666665554444421   1111222222 335899999999999999999999999886654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.44  Score=49.54  Aligned_cols=164  Identities=12%  Similarity=0.114  Sum_probs=103.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhccCChHhHHH
Q 009514          275 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEE  353 (533)
Q Consensus       275 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~al~aL~~l~~~~~~~~~~~  353 (533)
                      =+.+-+++.+.||-+|.....++..-=.+...       .++|..|++. ..+.+.+||++|+.+|+-++.. +|+    
T Consensus       521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~-dp~----  588 (929)
T KOG2062|consen  521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-DPE----  588 (929)
T ss_pred             HHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEec-Chh----
Confidence            34445577888999998888777532222222       3567777776 5567899999999999987764 332    


Q ss_pred             HHHhhcHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          354 IFMELTASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       354 i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                           ..+..+.+|. +-++.||-.++.+|+-.|.+.-...         .+.+|-.+..+ +..-|++.|+-+++.+..
T Consensus       589 -----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e---------Ai~lLepl~~D-~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  589 -----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE---------AINLLEPLTSD-PVDFVRQGALIALAMIMI  653 (929)
T ss_pred             -----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH---------HHHHHhhhhcC-hHHHHHHHHHHHHHHHHH
Confidence                 2456666664 6789999999999988887653211         44445443443 777899998888777665


Q ss_pred             CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh--hHHHHHH
Q 009514          433 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS--RLRTAAV  473 (533)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~--~v~~~a~  473 (533)
                      ...+....-+        .++-+.+.+.+.+.+.  -++..|+
T Consensus       654 Q~t~~~~pkv--------~~frk~l~kvI~dKhEd~~aK~GAi  688 (929)
T KOG2062|consen  654 QQTEQLCPKV--------NGFRKQLEKVINDKHEDGMAKFGAI  688 (929)
T ss_pred             hcccccCchH--------HHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            3322221111        3444566666665443  3444444

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.53  E-value=0.23  Score=50.98  Aligned_cols=134  Identities=20%  Similarity=0.218  Sum_probs=85.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514          232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF  311 (533)
Q Consensus       232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  311 (533)
                      ...++..-+ ++...+.-|+..|..+....+.+      ....+..++.|++++|..+|..|...|-.++.+.++...  
T Consensus        25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l------~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~--   95 (556)
T PF05918_consen   25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDL------QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS--   95 (556)
T ss_dssp             HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG------HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH--
T ss_pred             HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh--
Confidence            334444444 56788899999999988776654      345788999999999999999999999999987655443  


Q ss_pred             HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC---CCChhHHHHHHHHHHHhh
Q 009514          312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC---DPEPSVQEQALALVRNLV  386 (533)
Q Consensus       312 ~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~---~~~~~v~~~a~~~L~~l~  386 (533)
                         .+...|+++|.++++.-...+-.+|..+.... +        .+.+..+...+.   ..+..+++.++..|+.-.
T Consensus        96 ---kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl  161 (556)
T PF05918_consen   96 ---KVADVLVQLLQTDDPVELDAVKNSLMSLLKQD-P--------KGTLTGLFSQIESSKSGDEQVRERALKFLREKL  161 (556)
T ss_dssp             ---HHHHHHHHHTT---HHHHHHHHHHHHHHHHH--H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred             ---HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-c--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence               45678999999888766666666776665432 2        122333333332   467788999988886443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.51  E-value=0.51  Score=48.89  Aligned_cols=104  Identities=20%  Similarity=0.223  Sum_probs=71.5

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc-CChHhH
Q 009514          273 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL-AEDKCK  351 (533)
Q Consensus       273 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~-~~~~~~  351 (533)
                      +.+..+++-..+++..||..++..|..+........+.+. .+....+..-+.+..+.+|..|+.+|+.+=.. .++++ 
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~-  162 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC-  162 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc-
Confidence            4444455555678999999999999999864444433333 46667777777888899999999999998531 12111 


Q ss_pred             HHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHHH
Q 009514          352 EEIFMELTASLLASLIC-DPEPSVQEQALALVRN  384 (533)
Q Consensus       352 ~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~  384 (533)
                            -....+..+++ |++++|+..++..+..
T Consensus       163 ------~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  163 ------PVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             ------cHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence                  13445566664 8899999888755443

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.46  E-value=0.0057  Score=36.10  Aligned_cols=30  Identities=30%  Similarity=0.574  Sum_probs=26.2

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 009514          231 VLKLVVDALAHDSSDVRSAACMCLRSVSRS  260 (533)
Q Consensus       231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~  260 (533)
                      ++|.+++++++++++||.+|+.+|+.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            478999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.43  E-value=0.05  Score=56.78  Aligned_cols=232  Identities=15%  Similarity=0.105  Sum_probs=157.2

Q ss_pred             CcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCc--hhhhHHHHHHhhhcCCHH
Q 009514          100 TGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGR--VGDEASFAFSSLIAEKED  177 (533)
Q Consensus       100 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~~~~a~~~L~~l~~~~~~  177 (533)
                      ..++...++.+.....+.-+..+..+|.-  .. +...   -.....++++...+..+..  -.+++..+++|+++.++.
T Consensus       502 k~~~~~aLlrl~~~q~e~akl~~~~aL~~--~i-~f~~---~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s  575 (748)
T KOG4151|consen  502 KPGGYEALLRLGQQQFEEAKLKWYHALAG--KI-DFPG---ERSYEVVKPLDSALHNDEKGLENFEALEALTNLASISES  575 (748)
T ss_pred             cccHHHHHHHHHHHhchHHHHHHHHHHhh--hc-CCCC---CchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchh
Confidence            35788889998888788888888887772  11 1111   1123566666666653322  246889999999988887


Q ss_pred             HHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh-hchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009514          178 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS-LQVLKLVVDALAHDSSDVRSAACMCLRS  256 (533)
Q Consensus       178 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~~l~~l~~~L~~~~~~v~~~a~~~L~~  256 (533)
                      .++.+..+.+++.+-.++...  ++..+.+++..+.+|.....-+...+++ ...++....++.........+++.++..
T Consensus       576 ~r~~i~ke~~~~~ie~~~~ee--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~  653 (748)
T KOG4151|consen  576 DRQKILKEKALGKIEELMTEE--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAA  653 (748)
T ss_pred             hHHHHHHHhcchhhHHHhhcc--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccc
Confidence            776677777777766655443  4778889999999998776555566666 4577887778888888888888888876


Q ss_pred             HhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHH
Q 009514          257 VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL  336 (533)
Q Consensus       257 ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al  336 (533)
                      ++....+.+........+...++.++.+++.++|......+.|+........+.+++...++.+..+-+-.....++.+.
T Consensus       654 I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~  733 (748)
T KOG4151|consen  654 ITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAA  733 (748)
T ss_pred             hhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhh
Confidence            65544555542123456677888899999999999999999997655555556666666666666544433233333333


Q ss_pred             HHH
Q 009514          337 RAL  339 (533)
Q Consensus       337 ~aL  339 (533)
                      .+|
T Consensus       734 ~~l  736 (748)
T KOG4151|consen  734 PCL  736 (748)
T ss_pred             hHH
Confidence            333

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.29  Score=51.67  Aligned_cols=231  Identities=12%  Similarity=0.137  Sum_probs=143.6

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 009514          231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST  310 (533)
Q Consensus       231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~  310 (533)
                      .+...+..+.++.+.+|..+...|+.+.+.- ..+.. +...+++......|++.|+-+--.|...+..|+.-++     
T Consensus       728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~-~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----  800 (982)
T KOG4653|consen  728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATL-IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----  800 (982)
T ss_pred             HHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhh-hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----
Confidence            4556666777888889999999999998752 22323 5678899999999999999999999998888875443     


Q ss_pred             HHHhCcHHHHHH-hhcCCC---HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514          311 FIRLGGVKLLVQ-LSKSMD---STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  386 (533)
Q Consensus       311 ~~~~~~i~~L~~-ll~~~~---~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~  386 (533)
                         ..++|.+.+ +....+   .+.+...=.++.++....++-. ....+ -.+.......++++...|..++..++++|
T Consensus       801 ---e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~-~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lc  875 (982)
T KOG4653|consen  801 ---EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELV-FKYKA-VLINTFLSGVREPDHEFRASSLANLGQLC  875 (982)
T ss_pred             ---hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHH-HHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHH
Confidence               356677776 433321   2333333356666654333211 11111 22344555667888888999999999998


Q ss_pred             cCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-CC
Q 009514          387 DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-ND  465 (533)
Q Consensus       387 ~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~-~~  465 (533)
                      ....-.....+.+   +...+......+.++-++.+|...+..+-.|.....-.+...    ...+....+..+.+. ++
T Consensus       876 q~~a~~vsd~~~e---v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~----~l~Dl~~tl~~~vr~~~d  948 (982)
T KOG4653|consen  876 QLLAFQVSDFFHE---VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRL----LLIDLDETLLSYVRQHDD  948 (982)
T ss_pred             HHHhhhhhHHHHH---HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHH----HHHHHHHHHHHHHhcCch
Confidence            6543222333322   455666666666788899999999998887654222222210    012222333334443 45


Q ss_pred             hhHHHHHHHHHHhhc
Q 009514          466 SRLRTAAVWAVLNLT  480 (533)
Q Consensus       466 ~~v~~~a~~~L~~l~  480 (533)
                      ..++..|+.++-.+-
T Consensus       949 d~~klhaql~leei~  963 (982)
T KOG4653|consen  949 DGLKLHAQLCLEEIQ  963 (982)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            567777777765443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=2.3  Score=46.92  Aligned_cols=229  Identities=14%  Similarity=0.153  Sum_probs=132.6

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhhccccccchhhhh---cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 009514          238 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN---ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL  314 (533)
Q Consensus       238 ~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~---~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~  314 (533)
                      +.++.+..+|..+-+.|..++...+  ... +.+   ..+...|.+-+++.+.-.+...+.+|..+....+..-..++..
T Consensus       662 ~e~~~~~~vQkK~yrlL~~l~~~~s--~~~-~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k  738 (1176)
T KOG1248|consen  662 FENSSSTKVQKKAYRLLEELSSSPS--GEG-LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK  738 (1176)
T ss_pred             hhccccHHHHHHHHHHHHHHhcCCc--hhh-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3345688999999999999987621  111 111   1223334444556677788888888888876554222233333


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhhc--cC--ChHhH-HHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514          315 GGVKLLVQLSKSMDSTIRLNALRALRNLIF--LA--EDKCK-EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~--~~--~~~~~-~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~  389 (533)
                      .+.+.++.+ +..+...|+++..+|..++.  ..  ..+.+ ...+++. +..+...+-.+...+....+-+++.+....
T Consensus       739 ~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnef-l~~Isagl~gd~~~~~as~Ivai~~il~e~  816 (1176)
T KOG1248|consen  739 LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEF-LSIISAGLVGDSTRVVASDIVAITHILQEF  816 (1176)
T ss_pred             HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHH-HHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence            334444444 77888899999999988861  10  00111 2222222 222222222233333322233444443221


Q ss_pred             cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHH
Q 009514          390 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR  469 (533)
Q Consensus       390 ~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~  469 (533)
                      .+....-.-+.  +++.+...|.+ .++++...|+..+.-+....+...   +..    +...++|.+..++++....+|
T Consensus       817 ~~~ld~~~l~~--li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe~~---l~~----~~~~LL~sll~ls~d~k~~~r  886 (1176)
T KOG1248|consen  817 KNILDDETLEK--LISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPEEC---LSP----HLEELLPSLLALSHDHKIKVR  886 (1176)
T ss_pred             hccccHHHHHH--HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCHHH---Hhh----hHHHHHHHHHHHHHhhhHHHH
Confidence            11111111111  66777777777 899999999999988888766322   111    124578888888888888999


Q ss_pred             HHHHHHHHhhcC
Q 009514          470 TAAVWAVLNLTC  481 (533)
Q Consensus       470 ~~a~~~L~~l~~  481 (533)
                      ..+-..+-.|..
T Consensus       887 ~Kvr~LlekLir  898 (1176)
T KOG1248|consen  887 KKVRLLLEKLIR  898 (1176)
T ss_pred             HHHHHHHHHHHH
Confidence            999888888884

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=1.3  Score=43.53  Aligned_cols=221  Identities=15%  Similarity=0.171  Sum_probs=141.3

Q ss_pred             HHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc-----c----ccchhhhhcCcHH
Q 009514          206 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK-----N----LSAGSFMNETIVI  276 (533)
Q Consensus       206 ~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~-----~----~~~~~~~~~~~i~  276 (533)
                      ...+.-+..++.. |+.-..+++.++++.++++|.|.|.++-.+....+..++...-     +    +-.. +++.++++
T Consensus       102 hd~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLida-Lvdg~vla  179 (536)
T KOG2734|consen  102 HDIIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDA-LVDGQVLA  179 (536)
T ss_pred             HHHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHH-HHhccHHH
Confidence            3345555555543 5666778899999999999999999999999999999975411     1    1112 46778888


Q ss_pred             HHHHhhcCCCH------HHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhccCCh
Q 009514          277 PLVRLLDDTST------AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAED  348 (533)
Q Consensus       277 ~Lv~lL~~~~~------~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~al~aL~~l~~~~~~  348 (533)
                      .|++-++.-|.      .-...+...+-|++.-.+...+.+.+.|.+..|+.-+..  +-..-+..+...|.-+..+++ 
T Consensus       180 LLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~-  258 (536)
T KOG2734|consen  180 LLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD-  258 (536)
T ss_pred             HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc-
Confidence            88887753222      334556677778876556666677777877777654433  334557888888887766544 


Q ss_pred             HhHHHHHHhhcHHHHHhhhC-----CC----ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc-hHHHHHHHhccCCchh
Q 009514          349 KCKEEIFMELTASLLASLIC-----DP----EPSVQEQALALVRNLVDGRINSVEYIFAEDGI-ILDAVGRQLRIASKAE  418 (533)
Q Consensus       349 ~~~~~i~~~~~~~~l~~lL~-----~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~-~~~~L~~~L~~~~~~~  418 (533)
                      +.+...-...|++.+++-+.     ++    +.+..++....|..+.- .++....++...|. .+.++.+     .+..
T Consensus       259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr-----~Kk~  332 (536)
T KOG2734|consen  259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLR-----EKKV  332 (536)
T ss_pred             hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHH-----HHHH
Confidence            35555555667888887663     21    23444454444444332 34556677776653 4444433     2334


Q ss_pred             HHHHHHHHHHHhccCCh
Q 009514          419 IEIQGMYVLGNVATGKE  435 (533)
Q Consensus       419 v~~~a~~~L~~l~~~~~  435 (533)
                      .+..++.+|-....|.+
T Consensus       333 sr~SalkvLd~am~g~~  349 (536)
T KOG2734|consen  333 SRGSALKVLDHAMFGPE  349 (536)
T ss_pred             hhhhHHHHHHHHHhCCC
Confidence            56677888877777654

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.24  E-value=0.0069  Score=35.75  Aligned_cols=29  Identities=31%  Similarity=0.413  Sum_probs=25.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 009514          274 IVIPLVRLLDDTSTAVQVAALGAISNIVV  302 (533)
Q Consensus       274 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  302 (533)
                      ++|.++++++|++++||..|+.+|++++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            37889999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.23  E-value=0.5  Score=45.39  Aligned_cols=189  Identities=13%  Similarity=0.103  Sum_probs=119.0

Q ss_pred             CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhH
Q 009514          273 TIVIPLV-RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK  351 (533)
Q Consensus       273 ~~i~~Lv-~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~  351 (533)
                      +.+..|+ ..++++++.+|..|..+|+-.+.-+...    . ...++.+...++.+++.++..|+.++..+...-+...-
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----A-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            4555554 5778999999999999999887644322    2 13366677777777899999999999987643222111


Q ss_pred             H-------HHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH-HHHHhhcCchHHHHH-HHhcc--CCchhHH
Q 009514          352 E-------EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV-EYIFAEDGIILDAVG-RQLRI--ASKAEIE  420 (533)
Q Consensus       352 ~-------~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~~~~~~L~-~~L~~--~~~~~v~  420 (533)
                      .       ........+.+.+.+.+.+++++..++..+..|.....-.- ..       ++..|+ .....  ..++..+
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~-------vL~~Lll~yF~p~t~~~~~Lr  173 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPK-------VLSRLLLLYFNPSTEDNQRLR  173 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHH-------HHHHHHHHHcCcccCCcHHHH
Confidence            1       12223456778888888899999999999999875532111 11       333332 22222  1345677


Q ss_pred             HHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh------hH-HHHHHHHHHhhcC
Q 009514          421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS------RL-RTAAVWAVLNLTC  481 (533)
Q Consensus       421 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~------~v-~~~a~~~L~~l~~  481 (533)
                      ..-...+-.++..+..+. ..+.       ..++|.+-.+.+.++.      .+ -...+..+..++.
T Consensus       174 Q~L~~Ffp~y~~s~~~~Q-~~l~-------~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~  233 (298)
T PF12719_consen  174 QCLSVFFPVYASSSPENQ-ERLA-------EAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD  233 (298)
T ss_pred             HHHHHHHHHHHcCCHHHH-HHHH-------HHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence            777777788887766544 4444       5677887777764322      11 2345555555654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.17  E-value=0.019  Score=45.77  Aligned_cols=71  Identities=14%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      ++..|.++|..+.++.+..-||.-|+.++...+..+. +++      +.|+-..+++++.++|++||.+|..++..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~-ii~------~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRN-IIE------KLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHH-HHH------HHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHH-HHH------hcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            7888888896657888889999999999987776555 444      3788899999999999999999999998775

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.16  E-value=0.015  Score=46.23  Aligned_cols=73  Identities=23%  Similarity=0.387  Sum_probs=60.6

Q ss_pred             cCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514          272 ETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       272 ~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~  344 (533)
                      ...+..|+++|. +.|+.+...||.=|+.++...+..+..+-+.|+=..+++++.++|+++|..|+.++..+..
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            346888999994 5688899999999999999888888777778888889999999999999999999987753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.08  E-value=2.7  Score=45.48  Aligned_cols=447  Identities=13%  Similarity=0.125  Sum_probs=221.9

Q ss_pred             HHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---------ChHHHHHHHHHHHHHhcCC---hhhhhhhccccCcc-
Q 009514           36 LGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---------SLIQRDASLESIATIFKNN---PEVVSQFVGPDTGR-  102 (533)
Q Consensus        36 ~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---------~~~v~~~al~aL~~l~~~~---~~~~~~~~~~~~~~-  102 (533)
                      +|...+..+++.. .+.  .-.|.++-++++|.+         +++-++-|+..++.++.--   ......+     .. 
T Consensus       391 Aa~~~l~~~~~KR-~ke--~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-----E~f  462 (1010)
T KOG1991|consen  391 AALDFLTTLVSKR-GKE--TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-----EYF  462 (1010)
T ss_pred             HHHHHHHHHHHhc-chh--hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-----HHH
Confidence            3455555565322 111  223456666777762         3477888999999987210   0000000     01 


Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-C-CCchhhhHHHHHHhhhcCCHHHHH
Q 009514          103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D-PGRVGDEASFAFSSLIAEKEDMQK  180 (533)
Q Consensus       103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~-~~~~~~~a~~~L~~l~~~~~~~~~  180 (533)
                      .+.-++..++++.--.|..|+..+..++...   ..+...-..++..-.+.|. + .-+++.+|+.+|..+.++.+....
T Consensus       463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~d---f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e  539 (1010)
T KOG1991|consen  463 LVNHVFPEFQSPYGYLRARACWVLSQFSSID---FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE  539 (1010)
T ss_pred             HHHHhhHhhcCchhHHHHHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence            1223445678887788999999999888643   3344445567777777776 3 347899999999998887765433


Q ss_pred             HHHH--cCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh--hchHHHHHHhcCC------CCHHHHHHH
Q 009514          181 LAFE--VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDALAH------DSSDVRSAA  250 (533)
Q Consensus       181 ~~~~--~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~l~~~L~~------~~~~v~~~a  250 (533)
                      .+..  -+.++.|.++.+..  +-+.....+..+-  +...++......+  ......+.+.+..      .+.+-..+|
T Consensus       540 ~~~~hvp~~mq~lL~L~ne~--End~Lt~vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA  615 (1010)
T KOG1991|consen  540 KVSAHVPPIMQELLKLSNEV--ENDDLTNVMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAA  615 (1010)
T ss_pred             hHhhhhhHHHHHHHHHHHhc--chhHHHHHHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHH
Confidence            2221  12334455533322  1111111111111  1122222222111  2344555566552      233455667


Q ss_pred             HHHHHHHhh---ccccccch-hhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514          251 CMCLRSVSR---SIKNLSAG-SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS  326 (533)
Q Consensus       251 ~~~L~~ls~---~~~~~~~~-~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~  326 (533)
                      .++|+.++.   +.++.... +-.+.-+.|.+-.+|.+.-.++-+.++..+.++.....+....+  =|..+.+.+..+.
T Consensus       616 ~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~  693 (1010)
T KOG1991|consen  616 SGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQD  693 (1010)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhh
Confidence            777766642   11222111 01233345555556777778888888888877765433322222  2556667777777


Q ss_pred             CCHHHHHHHHHHHHHhhccCChHh-HHHHHHhhcHHHHHhhhCC--CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 009514          327 MDSTIRLNALRALRNLIFLAEDKC-KEEIFMELTASLLASLICD--PEPSVQEQALALVRNLVDGRINSVEYIFAEDGII  403 (533)
Q Consensus       327 ~~~~~~~~al~aL~~l~~~~~~~~-~~~i~~~~~~~~l~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~  403 (533)
                      ...+.-....-+|.|......+.. +....-......+-.++.+  ....-.+.|+.++..+..+..+.+++.+.-   .
T Consensus       694 ~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl---f  770 (1010)
T KOG1991|consen  694 DGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL---F  770 (1010)
T ss_pred             hhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH---H
Confidence            767777778888888765433322 1111222233444445544  233344556666665554433333332211   2


Q ss_pred             HHHHHHHhcc-CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHhhcC
Q 009514          404 LDAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       404 ~~~L~~~L~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-~~~v~~~a~~~L~~l~~  481 (533)
                      ++.....+.. ..+...+.-++.+..|...-++...-.++++.-.  -.++.+...+.+... ...-++-++.+|..+..
T Consensus       771 ~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~--~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~  848 (1010)
T KOG1991|consen  771 LELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGF--LNNFFTLWFQFINQFKKVHDKKLCVLGLLTLIS  848 (1010)
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCC--cccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            2222222222 2345566677776666555566555555553100  022334444443321 12233344444444442


Q ss_pred             C-CCCCcHHHHHHHHHCCcHHHHHhhhc
Q 009514          482 S-SSPGSSGRLVKLHDAGIVSHVKNMVN  508 (533)
Q Consensus       482 ~-~~~~~~~~~~~l~~~g~~~~L~~ll~  508 (533)
                      - ..+..   ..... .++.+.++.|+.
T Consensus       849 l~~~~~~---~~e~l-~~l~~~lv~L~~  872 (1010)
T KOG1991|consen  849 LGQDPQL---PSEVL-GQLGPALVELLL  872 (1010)
T ss_pred             ccccCCc---hHHHH-HHHHHHHHHHHH
Confidence            1 11111   12222 266778888775

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.90  E-value=0.55  Score=45.12  Aligned_cols=110  Identities=17%  Similarity=0.245  Sum_probs=80.5

Q ss_pred             chHHHHH-HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514          230 QVLKLVV-DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  308 (533)
Q Consensus       230 ~~l~~l~-~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  308 (533)
                      +.+..++ ..+++.++.+|..|.+||+-.+--...      .....++.+.+.++.++.+++..|+.++.-+...++...
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~------~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE------LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4444444 677899999999999999988765332      223456677887777799999999999998876543211


Q ss_pred             -HH-------HHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 009514          309 -ST-------FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL  345 (533)
Q Consensus       309 -~~-------~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~  345 (533)
                       ..       ......++.+.+.+.+.+++++..++..++.|...
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~  144 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS  144 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence             11       11234667778888888999999999999998754

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.90  E-value=1.8  Score=41.94  Aligned_cols=202  Identities=11%  Similarity=0.124  Sum_probs=136.1

Q ss_pred             HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh-----hHhhhhh--chHHHHHHhcCCCCHHHHHHHHHH
Q 009514          181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC-----RSRCLSL--QVLKLVVDALAHDSSDVRSAACMC  253 (533)
Q Consensus       181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~-----~~~~~~~--~~l~~l~~~L~~~~~~v~~~a~~~  253 (533)
                      .+...+.+..|+..|..-  +.+.|..+.....++.......     ...+...  .++..++..-+  ++++-..+-..
T Consensus        71 Ei~~~dll~~Li~~L~~L--~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~m  146 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKL--DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS---HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhC--CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHH
Confidence            455678888898888765  3667888888888776643222     2233332  45555655544  44555556666


Q ss_pred             HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhC---cHHHHHHhhcCCCHH
Q 009514          254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG---GVKLLVQLSKSMDST  330 (533)
Q Consensus       254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~  330 (533)
                      |+...+. +...+. +.....+..+.+....++-++...|..++.-+...+......++..+   ....+..++.+++-.
T Consensus       147 lRec~k~-e~l~~~-iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv  224 (335)
T PF08569_consen  147 LRECIKH-ESLAKI-ILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV  224 (335)
T ss_dssp             HHHHTTS-HHHHHH-HHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred             HHHHHhh-HHHHHH-HhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence            7777766 444444 56677888899999999999999999999988776655544555443   445667889999999


Q ss_pred             HHHHHHHHHHHhhccCChH--hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          331 IRLNALRALRNLIFLAEDK--CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       331 ~~~~al~aL~~l~~~~~~~--~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                      +|..++..|+.+.....+-  ....+-+...+..+..+|++++..+|..|..++--...+
T Consensus       225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            9999999999997643321  123344455688889999999999999999887665544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.90  E-value=0.82  Score=48.50  Aligned_cols=213  Identities=17%  Similarity=0.099  Sum_probs=131.9

Q ss_pred             chhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHH-
Q 009514          202 PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR-  280 (533)
Q Consensus       202 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~-  280 (533)
                      +.++-+++..|..+..+. .-...+...+++....+.+++.++-|-..|...+..|+.-         +.+.++|-|.+ 
T Consensus       741 vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev---------y~e~il~dL~e~  810 (982)
T KOG4653|consen  741 VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV---------YPEDILPDLSEE  810 (982)
T ss_pred             ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh---------cchhhHHHHHHH
Confidence            447889999999988643 2234566778999999999999999988888888777753         55677888877 


Q ss_pred             hhcC---CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh
Q 009514          281 LLDD---TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME  357 (533)
Q Consensus       281 lL~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~  357 (533)
                      ..+.   +-++.+...-.++.+++..-++....... -.+..+++...+++...|..++..+++++.-..-.....+.+ 
T Consensus       811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e-  888 (982)
T KOG4653|consen  811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE-  888 (982)
T ss_pred             HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH-
Confidence            3432   22455555557777776654443322222 456677777788888889999999999986432212222222 


Q ss_pred             hcHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhc-CchHHHHHHHhccCCchhHHHHHHHHH
Q 009514          358 LTASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAED-GIILDAVGRQLRIASKAEIEIQGMYVL  427 (533)
Q Consensus       358 ~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~-~~~~~~L~~~L~~~~~~~v~~~a~~~L  427 (533)
                       ...-++.+.. +++.-+|..|+..+..+..+.....-.+.... -.....+......++++.++.+++-++
T Consensus       889 -v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  889 -VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             -HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence             1223333333 67788999999999988876432221111111 002223333344445555665555544

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.90  E-value=0.087  Score=57.36  Aligned_cols=141  Identities=18%  Similarity=0.248  Sum_probs=108.8

Q ss_pred             hHHHHHHhcC----CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCc
Q 009514          231 VLKLVVDALA----HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFT  305 (533)
Q Consensus       231 ~l~~l~~~L~----~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~  305 (533)
                      ..|.+++..+    ..+|.++.+|.-+|+.+---....+      +.-+|.|+..|. ++++.+|..+.-+++-++..++
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc------es~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC------ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH------HHHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            5677777774    4679999999999988743212222      345788999997 8999999999999999998776


Q ss_pred             hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHh
Q 009514          306 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL  385 (533)
Q Consensus       306 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l  385 (533)
                      ...+     -+-+.|.+.++++++.+|.+|+.+|.+|...      ..+.-.|-+.-+..+|.|+++.++.-|=..+..+
T Consensus       994 nlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILn------dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen  994 NLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILN------DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred             cccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh------hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            5442     3456788899999999999999999999652      3444557788889999999999988877666666


Q ss_pred             hcC
Q 009514          386 VDG  388 (533)
Q Consensus       386 ~~~  388 (533)
                      +..
T Consensus      1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred             hhc
Confidence            644

>PRK14707 hypothetical protein; Provisional

Probab=95.88  E-value=5.3  Score=47.12  Aligned_cols=437  Identities=12%  Similarity=0.037  Sum_probs=212.7

Q ss_pred             cccchHHHHhhhc--CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChh
Q 009514           15 QEENMEFLLSLLN--NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPE   90 (533)
Q Consensus        15 ~~~~i~~L~~lL~--~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~   90 (533)
                      ++.+|..+++-++  .++++++..+...-..++....-+.. ++..++...+.-|..  +..+..++..+++.=.-+++.
T Consensus       203 ~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~-~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~  281 (2710)
T PRK14707        203 DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE-LKPQELGNALNALSKWADTPVCAAAASALAERLVDDPG  281 (2710)
T ss_pred             chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh-CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHH
Confidence            5677777777766  34454444444333456654433332 233344444444443  445777777676553334444


Q ss_pred             hhhhhccccCcccHHHHHH-HHhcCChhh-HHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-C-CCchhhhHHH
Q 009514           91 VVSQFVGPDTGRTLSCIIE-IVKDRFART-RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D-PGRVGDEASF  166 (533)
Q Consensus        91 ~~~~~~~~~~~~~i~~l~~-ll~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~-~~~~~~~a~~  166 (533)
                      ...++.    .-.+...+. +.|-++..+ +.+|......+.+.. . ... -.....+...+.-|+ - +..+...++.
T Consensus       282 l~~al~----~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~-~-l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~  354 (2710)
T PRK14707        282 LRKALD----PINVTQALNALSKWADLPVCAEAAIALAERLADDP-E-LCK-ALNARGLSTALNALSKWPDNPVCAAAVS  354 (2710)
T ss_pred             HHHhcC----HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH-h-hhh-ccchHHHHHHHHHhhcCCCchhHHHHHH
Confidence            444331    223333333 445555554 444444444455432 1 111 122233444444454 2 3456777777


Q ss_pred             HHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHH
Q 009514          167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV  246 (533)
Q Consensus       167 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v  246 (533)
                      .|+.=..++++..+ -.+..++...++-|..=+ +......+..+|..-..++.+.++.+-..|+-..|-.+-+=++..+
T Consensus       355 ~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~  432 (2710)
T PRK14707        355 ALAERLVADPELRK-DLEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPI  432 (2710)
T ss_pred             HHHHHhccCHhhhc-ccchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchh
Confidence            77755556666543 334556666666665543 3445666666776555567777776655555555444445566677


Q ss_pred             HHHHHHHHH-HHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514          247 RSAACMCLR-SVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS  324 (533)
Q Consensus       247 ~~~a~~~L~-~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll  324 (533)
                      ...++..|. .++.. ..+++. + +...+-..+..++ =+|..+...|+..|..-.......++.+--.++...|-.+.
T Consensus       433 C~~aa~~lA~~la~d-~~l~~~-~-~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLS  509 (2710)
T PRK14707        433 CGQAVSALAGRLAHD-TELCKA-L-DPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLS  509 (2710)
T ss_pred             HHHHHHHHHHHHhcc-HHHHhh-c-ChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhh
Confidence            777777765 44544 455544 2 2222333444443 36666666666666554433344444444445556666666


Q ss_pred             cCCCHHHH-HHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 009514          325 KSMDSTIR-LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII  403 (533)
Q Consensus       325 ~~~~~~~~-~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~  403 (533)
                      +-++.... ..+.|.-..+..  +....+.+-.......+-.+-+.++...-+.+...|.......+.... -++..  =
T Consensus       510 K~Pd~~~c~~A~~~lA~rl~~--~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~-~L~aq--~  584 (2710)
T PRK14707        510 KWPDTPICAEAASALAERVVD--ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPK-DLHRQ--G  584 (2710)
T ss_pred             cCCCcHHHHHHHHHHHHHhcc--chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHH-hhhhh--H
Confidence            66664433 334444444432  111111111112122222233456556666666666655443332222 22222  2


Q ss_pred             HHHHHHHhccCCchh-HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHh
Q 009514          404 LDAVGRQLRIASKAE-IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLN  478 (533)
Q Consensus       404 ~~~L~~~L~~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~~  478 (533)
                      +..+.+-|+..++.. -+..+.|+-..+.. .+..+..+-        ..-+..+++-|+ -++...+..++..|..
T Consensus       585 Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~~l~--------~q~lan~lNALSKWP~s~~C~~Aa~rLA~  652 (2710)
T PRK14707        585 VVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRKELD--------PVDVTNVLNALSKWPGTEVCAEVARLLAG  652 (2710)
T ss_pred             HHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhhhcc--------HHHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence            344555555545533 34444444444443 332223222        122233444443 3555666666666544

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=95.83  E-value=2  Score=46.04  Aligned_cols=274  Identities=12%  Similarity=0.081  Sum_probs=153.7

Q ss_pred             HhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHH
Q 009514          111 VKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVD  189 (533)
Q Consensus       111 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  189 (533)
                      ..+..+.++..|++.++..++....    .-...+++..|+++..+ .+++..-.-++|+...+-+++... ..+....|
T Consensus       500 ~~~~~~~~ki~a~~~~~~~~~~~vl----~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P  574 (1005)
T KOG2274|consen  500 TMDVPPPVKISAVRAFCGYCKVKVL----LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICP  574 (1005)
T ss_pred             ccCCCCchhHHHHHHHHhccCceec----cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhH
Confidence            3466677888888877776643321    12245778888888874 345555556777777777776532 33455567


Q ss_pred             HHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC----HHHHHHHHHHHHHHhhcccccc
Q 009514          190 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS----SDVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       190 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~----~~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      .++.++...+.+|.+...+-..+..++.. ..+... ...-.+|.++..|+.+.    ......++..|..+-+..++.-
T Consensus       575 ~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~-m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL  652 (1005)
T KOG2274|consen  575 LTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGP-MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL  652 (1005)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcc-hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence            77887766656776666665555555532 111111 12247999999998765    6788888888887877654432


Q ss_pred             chhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcH------HHHHHhhcCCCHH-HHHHHHH
Q 009514          266 AGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV------KLLVQLSKSMDST-IRLNALR  337 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i------~~L~~ll~~~~~~-~~~~al~  337 (533)
                      .. ..-.-..|++.+.. .++|.++...+..+|+.+.....+..-.-...++.      ..+-++|.....+ .-..+=.
T Consensus       653 ~~-~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~  731 (1005)
T KOG2274|consen  653 PN-LLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGP  731 (1005)
T ss_pred             cH-HHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhH
Confidence            22 23344567777755 56788999999999998886543322111122222      2333444432211 1111112


Q ss_pred             HHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514          338 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV  393 (533)
Q Consensus       338 aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  393 (533)
                      .+..+..+.+.+... -++......+.++-.-....+....+.++..|...+.+..
T Consensus       732 lV~tLit~a~~el~~-n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~  786 (1005)
T KOG2274|consen  732 LVLTLITHASSELGP-NLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQL  786 (1005)
T ss_pred             HHHHHHHHHHHHhch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHH
Confidence            222222222111110 0111112334445555666777777788888887765543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=95.79  E-value=0.26  Score=52.40  Aligned_cols=190  Identities=19%  Similarity=0.232  Sum_probs=124.4

Q ss_pred             hHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHH--------HHH----HcCcHHHHHHhhhcCCCCchhHHHHHHHHH
Q 009514          146 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK--------LAF----EVNGVDKLYNHLQKGSLHPRRFEGILLALA  213 (533)
Q Consensus       146 ~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~--------~~~----~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~  213 (533)
                      +...|+.+|++ +++-..++.++.-+..|.+...+        +.+    =+..+|.|++.+...  +...+..-+.+|.
T Consensus       816 ia~klld~Ls~-~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~--~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  816 IAEKLLDLLSG-PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA--PGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHHhcCC-ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC--CccchhHHHHHHH
Confidence            34455666654 33444566666666665554321        111    245678888877733  3567788888888


Q ss_pred             HhhccchhhhHhhhh--hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC---HH
Q 009514          214 DMCSKLECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS---TA  288 (533)
Q Consensus       214 ~l~~~~~~~~~~~~~--~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~  288 (533)
                      ++-.+-|.  ..+..  ...+|.+++.|+-++..+|..+..++.-+....+.+...  .-..++|.++.+=++.+   ..
T Consensus       893 hVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~--~~~Tlvp~lLsls~~~~n~~~~  968 (1030)
T KOG1967|consen  893 HVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE--HLSTLVPYLLSLSSDNDNNMMV  968 (1030)
T ss_pred             HHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH--HHhHHHHHHHhcCCCCCcchhH
Confidence            88765443  22222  258999999999999999999999998775543443332  33456777776666554   68


Q ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009514          289 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL  342 (533)
Q Consensus       289 v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l  342 (533)
                      ||..|..+|..+....+...-...+..++..|...+.++..-+|..|..+=.+.
T Consensus       969 VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  969 VREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence            999999999999873333222333456778888888887777888887765543

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=95.78  E-value=0.084  Score=54.47  Aligned_cols=191  Identities=20%  Similarity=0.191  Sum_probs=132.5

Q ss_pred             HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514          312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN  391 (533)
Q Consensus       312 ~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~  391 (533)
                      .+.+.+|.++++.+..+..+|..-+.-+-+...+-    .+.+++.-.++.+...+.+.++.++++.+..+..++..-. 
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L----t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~-  401 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL----TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS-  401 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc----CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc-
Confidence            45678999999999999888887666665554433    3466677788999999999999999999988888774321 


Q ss_pred             hHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHH
Q 009514          392 SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRT  470 (533)
Q Consensus       392 ~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~  470 (533)
                        ...++..  ++..+.+.-. +.+..++....-+|+.++.. .+..|+.++.           ..+.+-++++-...|.
T Consensus       402 --~~~Ln~E--llr~~ar~q~-d~~~~irtntticlgki~~~l~~~~R~~vL~-----------~aftralkdpf~paR~  465 (690)
T KOG1243|consen  402 --KRNLNGE--LLRYLARLQP-DEHGGIRTNTTICLGKIAPHLAASVRKRVLA-----------SAFTRALKDPFVPARK  465 (690)
T ss_pred             --hhhhcHH--HHHHHHhhCc-cccCcccccceeeecccccccchhhhccccc-----------hhhhhhhcCCCCCchh
Confidence              1122222  6667755433 46677888887888887754 2333444432           3444567778788899


Q ss_pred             HHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          471 AAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       471 ~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      ++.+++..-...-  .   . .. +...++|.+..+.-|+++.++..|..++..+..-.+
T Consensus       466 a~v~~l~at~~~~--~---~-~~-va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  466 AGVLALAATQEYF--D---Q-SE-VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE  518 (690)
T ss_pred             hhhHHHhhccccc--c---h-hh-hhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence            9998887655310  1   1 11 234578899999999999999999998887755433

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.76  E-value=4.9  Score=45.76  Aligned_cols=110  Identities=19%  Similarity=0.207  Sum_probs=72.6

Q ss_pred             cCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCC
Q 009514           57 AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC  135 (533)
Q Consensus        57 ~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  135 (533)
                      .+.+..|+..|.. ...+|.+|++||+.+...+|.+..      ....-..+-.-+.+....||.+|+..+.......++
T Consensus       815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~------~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e  888 (1692)
T KOG1020|consen  815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS------RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE  888 (1692)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc------CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence            4466777777875 568999999999999988877631      234455566677788889999999998876654432


Q ss_pred             cchhhhhHhhhHHHHH-HhcCCCCchhhhHHHHHHhhhcCCHHH
Q 009514          136 YLQDVGIKTKLINNLL-ELLDDPGRVGDEASFAFSSLIAEKEDM  178 (533)
Q Consensus       136 ~~~~~~~~~~~i~~L~-~ll~~~~~~~~~a~~~L~~l~~~~~~~  178 (533)
                      . ..     .....+. ++++.+..||..+...+..+....++.
T Consensus       889 ~-~~-----qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf  926 (1692)
T KOG1020|consen  889 L-IF-----QYYDQIIERILDTGVSVRKRVIKILRDICEETPDF  926 (1692)
T ss_pred             H-HH-----HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence            1 11     1112222 222234567777777777777666554

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.76  E-value=0.17  Score=43.34  Aligned_cols=139  Identities=18%  Similarity=0.225  Sum_probs=97.1

Q ss_pred             CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 009514          326 SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD  405 (533)
Q Consensus       326 ~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~  405 (533)
                      ...+++|..++-++..+..     ..+.-.....-+.+..++...+.+-...++.++..+....++....++...| +++
T Consensus        16 ~~~~~~r~~a~v~l~k~l~-----~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg-~~~   89 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLD-----AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEG-FLE   89 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTT-HHH
T ss_pred             CCCHhHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhh-HHH
Confidence            3556789988888888731     2222233333455556666666667888999999999998888888876666 778


Q ss_pred             HHHHHhc-cCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChh-HHHHHHHHHHhh
Q 009514          406 AVGRQLR-IASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSR-LRTAAVWAVLNL  479 (533)
Q Consensus       406 ~L~~~L~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~-v~~~a~~~L~~l  479 (533)
                      .+..... ...+..++..++.+|..-+ .++..|..+.+        +.++.|.+.++ +++.. +|..|+.+|..+
T Consensus        90 ~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~~--------~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen   90 SLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFISK--------NYVSWLKELYKNSKDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             HHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCHH--------HCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHHH--------HHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence            8887777 2266778888888886544 56667777764        56689999995 55566 888888877653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.72  E-value=0.1  Score=44.63  Aligned_cols=148  Identities=21%  Similarity=0.190  Sum_probs=94.5

Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccch
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG  267 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~  267 (533)
                      +..++..|.....++++|..+.-++..+-   +..+... ..-.-+.+-..+..++.+-...+..++..+-...+.....
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            44566666542235778888888888773   2222222 2223344444455544445566677777664444444444


Q ss_pred             hhhhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-CCCHH-HHHHHHHHHHH
Q 009514          268 SFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDST-IRLNALRALRN  341 (533)
Q Consensus       268 ~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~-~~~~al~aL~~  341 (533)
                      .+...|+++.++.++.  ..+..++..++.+|..-+ ....++..+. .++++.|-+..+ ++++. +|..|+-.|+.
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            3567899999999998  788999999999997666 4555665555 567899999985 45565 78777766654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=95.61  E-value=1.8  Score=42.89  Aligned_cols=175  Identities=15%  Similarity=0.157  Sum_probs=104.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHH
Q 009514          286 STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLA  364 (533)
Q Consensus       286 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~  364 (533)
                      ..+-+..|..-|..+.....-....-.-..++..+++.+.+ .++..+.-|++.|..++.+..  .+..-..+.++.-++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~--~~l~DstE~ai~K~L  377 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP--ARLFDSTEIAICKVL  377 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch--HhhhchHHHHHHHHH
Confidence            45566777775555544332211111112456667777777 677789999999999987543  121112234455555


Q ss_pred             hhhCCCChhHHHHHHHH-HHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHH
Q 009514          365 SLICDPEPSVQEQALAL-VRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMD  443 (533)
Q Consensus       365 ~lL~~~~~~v~~~a~~~-L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  443 (533)
                      +.-.+++.++...|... ++-++...|..          .+..+..++.+ .+...-..++..+..+..+-.  .+.+..
T Consensus       378 eaa~ds~~~v~~~Aeed~~~~las~~P~~----------~I~~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~--~EeL~~  444 (516)
T KOG2956|consen  378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQ----------CIVNISPLILT-ADEPRAVAVIKMLTKLFERLS--AEELLN  444 (516)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHhhCchh----------HHHHHhhHHhc-CcchHHHHHHHHHHHHHhhcC--HHHHHH
Confidence            55667777766666543 44444444421          23334444444 455555566666666665432  222221


Q ss_pred             HhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          444 QLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       444 ~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                       ++    .++.|.+++...+....||+.|++||-.+.
T Consensus       445 -ll----~diaP~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  445 -LL----PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             -hh----hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence             11    478899999999999999999999998777

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=95.57  E-value=0.59  Score=49.93  Aligned_cols=186  Identities=17%  Similarity=0.174  Sum_probs=120.1

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh-------------HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514          273 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR-------------RSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL  339 (533)
Q Consensus       273 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~-------------~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL  339 (533)
                      .+...++.+|++  +++-..++.++.-+..+.+..             ++.+. ..++|.+++..+......|.+=+.+|
T Consensus       815 ~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~L  891 (1030)
T KOG1967|consen  815 EIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEAL  891 (1030)
T ss_pred             hHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHH
Confidence            445567777765  455556666666555544332             22333 46889999888876777888888999


Q ss_pred             HHhhccCChHhHHHHHHh--hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-cCchHHHHHHHhccCCc
Q 009514          340 RNLIFLAEDKCKEEIFME--LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-DGIILDAVGRQLRIASK  416 (533)
Q Consensus       340 ~~l~~~~~~~~~~~i~~~--~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~~~~~~L~~~L~~~~~  416 (533)
                      .+...+.+   ++.+...  ...|.|++.|+-+|..+|-.+..++.-+..-.+.    ++.+ -+.+++.+.. |.++++
T Consensus       892 shVl~~vP---~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t----L~t~~~~Tlvp~lLs-ls~~~~  963 (1030)
T KOG1967|consen  892 SHVLTNVP---KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET----LQTEHLSTLVPYLLS-LSSDND  963 (1030)
T ss_pred             HHHHhcCC---HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc----cchHHHhHHHHHHHh-cCCCCC
Confidence            99877554   2344332  3468888888889999988888877766533221    1111 1225555544 333233


Q ss_pred             ---hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 009514          417 ---AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV  476 (533)
Q Consensus       417 ---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L  476 (533)
                         ..|+..|+..|..++..-|...-.-+.       ..++..++..|.++...||++|+.+=
T Consensus       964 n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-------~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  964 NNMMVVREDALQCLNALTRRLPTKSLLSFR-------PLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred             cchhHHHHHHHHHHHHHhccCCCccccccc-------HHHHHHhhhccCcHHHHHHHHHHHHh
Confidence               468999999999998744421111111       45678899999999999999998653

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.29  E-value=3.1  Score=40.41  Aligned_cols=204  Identities=12%  Similarity=0.079  Sum_probs=136.9

Q ss_pred             hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc---hhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHH
Q 009514          225 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA---GSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNI  300 (533)
Q Consensus       225 ~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~---~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl  300 (533)
                      .+...+.+..++..|..-+-+.|..++.+..++-+...+.+.   ........-+.|..+++ .+++++...+...|+..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec  150 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC  150 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence            455668899999999999999999999999998765333221   10111111222333333 34677788888888888


Q ss_pred             hcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhh---cHHHHHhhhCCCChhHHHH
Q 009514          301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL---TASLLASLICDPEPSVQEQ  377 (533)
Q Consensus       301 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~---~~~~l~~lL~~~~~~v~~~  377 (533)
                      +. ++...+.++....+..+.++.+.++-++-..|..++..+... .+..-...+...   .......+|.++++-.+.+
T Consensus       151 ~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq  228 (335)
T PF08569_consen  151 IK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ  228 (335)
T ss_dssp             TT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred             Hh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence            75 456666888888888899999999999999999999987653 222323333322   3456788999999999999


Q ss_pred             HHHHHHHhhcCCcchHHHHHhhc--CchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          378 ALALVRNLVDGRINSVEYIFAED--GIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       378 a~~~L~~l~~~~~~~~~~i~~~~--~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                      ++..|+.+..+.. ....+...-  ..-+..++.+|.+ ++..++-.|..+.--+.+
T Consensus       229 slkLL~ellldr~-n~~vm~~yi~~~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  229 SLKLLGELLLDRS-NFNVMTRYISSPENLKLMMNLLRD-KSKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHHSGG-GHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHchh-HHHHHHHHHCCHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHh
Confidence            9999999987643 233222221  1256777788887 888899999988866555

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.04  E-value=0.45  Score=47.96  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=73.4

Q ss_pred             cHHHHHhh-hCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhh
Q 009514          359 TASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH  437 (533)
Q Consensus       359 ~~~~l~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~  437 (533)
                      .+..++.. .++.+.+|+..|+.+|.-+|+.+++           .+.-.+++|..+-++.|+...+.+|+-.+.+.-+ 
T Consensus       552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-----------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-  619 (926)
T COG5116         552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-----------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-  619 (926)
T ss_pred             hHhhhheeecccCchHHHHHHHHheeeeEecCcc-----------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-
Confidence            45556665 6788999999999999999988765           3344446666667899999999999877776532 


Q ss_pred             HHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          438 KEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                       +..+            ..|-.+..+++.-||..|+-+++.+..
T Consensus       620 -~~a~------------diL~~L~~D~~dfVRQ~AmIa~~mIl~  650 (926)
T COG5116         620 -KVAT------------DILEALMYDTNDFVRQSAMIAVGMILM  650 (926)
T ss_pred             -HHHH------------HHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence             1122            345566678888899999999988875

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.99  E-value=0.34  Score=50.17  Aligned_cols=188  Identities=13%  Similarity=0.126  Sum_probs=122.8

Q ss_pred             HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc
Q 009514          184 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN  263 (533)
Q Consensus       184 ~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~  263 (533)
                      ..+.+|.|++++...+  ..+|..-+.-+-.   +-+...+++++..++|.+...+.+.++.+|+.+.+++..++.....
T Consensus       328 q~~i~p~l~kLF~~~D--r~iR~~LL~~i~~---~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  328 QVRIIPVLLKLFKSPD--RQIRLLLLQYIEK---YIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             ccchhhhHHHHhcCcc--hHHHHHHHHhHHH---HhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence            3466899999887653  4555544433333   3345556678888999999999999999999999999888644221


Q ss_pred             ccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514          264 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  343 (533)
Q Consensus       264 ~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~  343 (533)
                         . ......+..+-.+-.+++..++....-+|+.++.......   .+.-.+..+.+.++++-..-|.++++++....
T Consensus       403 ---~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  403 ---R-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             ---h-hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence               1 1223334444444446778888888888888875433221   22223455667777777777899888887654


Q ss_pred             ccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514          344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  387 (533)
Q Consensus       344 ~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~  387 (533)
                      ..-+    ..-+....++.+..+.-+++..++..+..++.....
T Consensus       476 ~~~~----~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  476 EYFD----QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             cccc----hhhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence            3222    112223356777777788888888888777765543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.96  E-value=2.6  Score=41.81  Aligned_cols=101  Identities=13%  Similarity=0.207  Sum_probs=77.4

Q ss_pred             hhh-cCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-C---CCHHHHHHHHHHHH
Q 009514          269 FMN-ETIVIPLVRLLDDT---STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-S---MDSTIRLNALRALR  340 (533)
Q Consensus       269 ~~~-~~~i~~Lv~lL~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~---~~~~~~~~al~aL~  340 (533)
                      +.+ ...+..|..++++.   .+.+-..|+..+..+..+.+.....+.+.|.++.+++.+. .   ++.++...--.+++
T Consensus       101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~  180 (379)
T PF06025_consen  101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS  180 (379)
T ss_pred             ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence            355 55566777788765   5789999999999999888888888999999999998777 3   34566666667777


Q ss_pred             HhhccCChHhHHHHHHhhcHHHHHhhhCCCC
Q 009514          341 NLIFLAEDKCKEEIFMELTASLLASLICDPE  371 (533)
Q Consensus       341 ~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~  371 (533)
                      .+|-+  ....+.+.+...++.+++++.+++
T Consensus       181 AicLN--~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  181 AICLN--NRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HHhcC--HHHHHHHHhcChHHHHHHHhCCHH
Confidence            77764  457788888888899988887654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.92  E-value=2.8  Score=37.93  Aligned_cols=141  Identities=12%  Similarity=0.130  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHh
Q 009514          291 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS  365 (533)
Q Consensus       291 ~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~  365 (533)
                      ..+...+.-++. .++-+..+.++..=--+..++..     +.+.+|..+++.++.+....+.+.-..+.....++..++
T Consensus        97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            344444444554 45566677776644444555543     357799999999999999888888888899999999999


Q ss_pred             hhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc------CchHHHHHHHhccCCchhHHHHHHHHHHHhccC
Q 009514          366 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAED------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATG  433 (533)
Q Consensus       366 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~------~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~  433 (533)
                      .++.++..-+.-|..++..+..++.. ..++....      +.++..++..+.+.+++....+++++..+++..
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD~G-L~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDDVG-LYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhcccc-HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999988876542 33332211      113344444444447777788888888888753

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=0.46  Score=47.91  Aligned_cols=127  Identities=15%  Similarity=0.098  Sum_probs=81.3

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhh
Q 009514          280 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL  358 (533)
Q Consensus       280 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~  358 (533)
                      +++.+.++-+|.....+++---.+..       ..|++..+++. ..+.++++|++|+.||+-.|....          .
T Consensus       523 ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~----------~  585 (926)
T COG5116         523 ELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR----------D  585 (926)
T ss_pred             HHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc----------c
Confidence            34445555555555554432111111       13566777776 566789999999999998776432          2


Q ss_pred             cHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccC
Q 009514          359 TASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG  433 (533)
Q Consensus       359 ~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~  433 (533)
                      .+...+++|. +.++.|+....-+|.-.|.+..+..         ..+.|-.++.+ +.+-|++.|+-+++.+...
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~---------a~diL~~L~~D-~~dfVRQ~AmIa~~mIl~Q  651 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV---------ATDILEALMYD-TNDFVRQSAMIAVGMILMQ  651 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH---------HHHHHHHHhhC-cHHHHHHHHHHHHHHHHhh
Confidence            3455666664 6688999888888887776643221         45555555555 7788999999888877754

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=94.78  E-value=3  Score=37.70  Aligned_cols=138  Identities=15%  Similarity=0.177  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-----CCCHHHHHHHHHHHHHHhcCC-chhHHHHHHhCcHHHHHH
Q 009514          249 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-----DTSTAVQVAALGAISNIVVDF-TTRRSTFIRLGGVKLLVQ  322 (533)
Q Consensus       249 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-----~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~~~~~i~~L~~  322 (533)
                      .+...+..++.+ +..+.. |.++.+.-.|..+|.     .+.+-+|..+++.|+.+.... .+....+.+.+++|..++
T Consensus        98 naL~LlQcvASH-pdTr~~-FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   98 NALALLQCVASH-PDTRRA-FLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHhcC-cchHHH-HHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            344444455555 666766 888887777777774     357789999999999998744 345567788999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhccCCh-H------hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          323 LSKSMDSTIRLNALRALRNLIFLAED-K------CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       323 ll~~~~~~~~~~al~aL~~l~~~~~~-~------~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                      .+..+++..+..|...+..+..+... .      .|...+....-..+..+.+.++..+...++++..+++.+
T Consensus       176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999987653321 1      111122222223344556778888888889888888866

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=94.70  E-value=7.9  Score=42.09  Aligned_cols=129  Identities=11%  Similarity=0.096  Sum_probs=86.3

Q ss_pred             hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhh
Q 009514          372 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAEN  451 (533)
Q Consensus       372 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~  451 (533)
                      +.++..+.-+|+++|..+......       .++.|++-|.-+....++-+..-+++.++..-.    .++        .
T Consensus       945 ~~vra~~vvTlakmcLah~~LaKr-------~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~--------d 1005 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAKR-------LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMT--------D 1005 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHH-------HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHH--------H
Confidence            467888888999998775432222       678888878765556677776666666664322    122        3


Q ss_pred             hhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCc-HHHHHhhhcCCCCcHHHHHHHHHHHHhhh
Q 009514          452 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI-VSHVKNMVNDPCLDVKLRVKTALEQFNSF  528 (533)
Q Consensus       452 ~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~-~~~L~~ll~~~~~~v~~~a~~aL~~~~~~  528 (533)
                      -.+|.+...|.++++-+|.++.-.|++|...   +-      +.=.|. +-.++--+-|.+++++.-|...++.+.+.
T Consensus      1006 ~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~---~~------vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1006 RYIPMIAASLCDPSVIVRRQTIILLARLLQF---GI------VKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             HhhHHHHHHhcCchHHHHHHHHHHHHHHHhh---hh------hhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence            5669999999999999999999999999952   11      111121 12233333456889998888888877654

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.58  E-value=3.4  Score=43.17  Aligned_cols=105  Identities=20%  Similarity=0.196  Sum_probs=64.3

Q ss_pred             hHhhhHHHHHHhcC-CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch
Q 009514          142 IKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE  220 (533)
Q Consensus       142 ~~~~~i~~L~~ll~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~  220 (533)
                      +-.+.+-.+++... .+..+|..++..|+.+.....+....+++ +...++..-+.+.  .|.+|-+|+.+|..+-.++.
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dr--ep~VRiqAv~aLsrlQ~d~~  158 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDR--EPNVRIQAVLALSRLQGDPK  158 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhcc--CchHHHHHHHHHHHHhcCCC
Confidence            33455666666555 34678999999998887533222222222 2334444445554  37789999999998864321


Q ss_pred             hhhHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHH
Q 009514          221 CCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCL  254 (533)
Q Consensus       221 ~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L  254 (533)
                      +     -+..++..+..+++ +++++||.++...|
T Consensus       159 d-----ee~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  159 D-----EECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             C-----CcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence            1     12245666666665 77999999887655

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.57  E-value=0.69  Score=39.98  Aligned_cols=116  Identities=16%  Similarity=0.263  Sum_probs=78.0

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHh--cCchHHHHHhhcC--ChHHHHHHHHHHHHHh---cCCh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFD--AGVLKRLTSLLGG--SLIQRDASLESIATIF---KNNP   89 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~--~g~i~~L~~lL~~--~~~v~~~al~aL~~l~---~~~~   89 (533)
                      .-+..+.++|+++++.-+..++..+...+..... +.+.+  .-|+..++++|++  +..+.+.++.++..+.   .+.|
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            3457788999999999999999999988854322 23323  3488899999986  4577888888888774   5556


Q ss_pred             hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCC
Q 009514           90 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC  135 (533)
Q Consensus        90 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~  135 (533)
                      +..+++....-...+..++.++++  ......+..+|..+....+.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            666665432223344445555554  55666777777777665543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.55  E-value=4.1  Score=40.26  Aligned_cols=238  Identities=18%  Similarity=0.174  Sum_probs=123.7

Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCC-CH-HHHHHHHHHHHHHhhcccccc
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD-SS-DVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~-~~-~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      +.-+++-|... .+..+|..++..|+.-+. ++..+..+..+|..+.+++.+.+. +. ..-..++.++.-+++......
T Consensus        23 v~ylld~l~~~-~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESS-SSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH  100 (361)
T ss_pred             HHHHHhhcccC-CCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence            44455556633 345677777777777765 578999999999999999999543 33 333444444445555422211


Q ss_pred             chhhhhcCcHHHHHHhhc-C-C---CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh---c------CCCHHH
Q 009514          266 AGSFMNETIVIPLVRLLD-D-T---STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS---K------SMDSTI  331 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~lL~-~-~---~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll---~------~~~~~~  331 (533)
                       . +.+.+....++.+++ + .   ..+....-...+.           ... .+....+....   .      .....-
T Consensus       101 -l-~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~ls-----------k~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp  166 (361)
T PF07814_consen  101 -L-LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLS-----------KVQ-QKSRSLCKELLSSGSSWKSPKPPELSP  166 (361)
T ss_pred             -h-hhchhHHHHHHHHhccccccccccchhhhhhhhhh-----------HHH-HHHHHHHHHHHhccccccccCCccccc
Confidence             1 234555666677776 1 1   0000000000010           000 01111111111   0      112223


Q ss_pred             HHHHHHHHHHhhc-------------cCChHhHHHHHHhhcHHHHHhhhCC----C------------ChhHHHHHHHHH
Q 009514          332 RLNALRALRNLIF-------------LAEDKCKEEIFMELTASLLASLICD----P------------EPSVQEQALALV  382 (533)
Q Consensus       332 ~~~al~aL~~l~~-------------~~~~~~~~~i~~~~~~~~l~~lL~~----~------------~~~v~~~a~~~L  382 (533)
                      +.-|+.++-.++.             ......|+++.+.|+++.++..+.+    .            +......++.+|
T Consensus       167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL  246 (361)
T PF07814_consen  167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL  246 (361)
T ss_pred             ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence            4455555555531             0112246778888899999988752    1            123445677888


Q ss_pred             HHhhcCCcchHHHHHhhcC-chHHHHHHHhccC--CchhHHHHHHHHHHHhccCChhhHHHH
Q 009514          383 RNLVDGRINSVEYIFAEDG-IILDAVGRQLRIA--SKAEIEIQGMYVLGNVATGKESHKEAV  441 (533)
Q Consensus       383 ~~l~~~~~~~~~~i~~~~~-~~~~~L~~~L~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~  441 (533)
                      -+.+..+.+...+.....+ .....+...+...  ...+....+++.+.|++..+++..+.+
T Consensus       247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~  308 (361)
T PF07814_consen  247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEF  308 (361)
T ss_pred             HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhh
Confidence            8877666555555555432 2222222222220  233456788999999998775544433

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PRK14707 hypothetical protein; Provisional

Probab=94.14  E-value=16  Score=43.44  Aligned_cols=312  Identities=17%  Similarity=0.138  Sum_probs=159.8

Q ss_pred             ccchHHHHhhhc--CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhh
Q 009514           16 EENMEFLLSLLN--NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEV   91 (533)
Q Consensus        16 ~~~i~~L~~lL~--~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~   91 (533)
                      ...+..|++-++  .++.+++..+..+...+|..+.-+..+ ...+|..++.-+..  +..-...+...|.....+.+..
T Consensus       162 ~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l  240 (2710)
T PRK14707        162 AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRL  240 (2710)
T ss_pred             cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHH
Confidence            345667777776  467788888888878888666555444 33344444444443  2234455556665543333444


Q ss_pred             hhhhccccCcccHHHHHH-HHhcCChhhHHHHHHHHH-HhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHH
Q 009514           92 VSQFVGPDTGRTLSCIIE-IVKDRFARTRLLASLCLI-VIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFA  167 (533)
Q Consensus        92 ~~~~~~~~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~  167 (533)
                      ..++    +.-.+...+. +.|=++..+=..|+..+. .+.... . ....+ ...-+-..+.-|+.  +..+...++..
T Consensus       241 ~~~~----~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~-l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~  313 (2710)
T PRK14707        241 RNEL----KPQELGNALNALSKWADTPVCAAAASALAERLVDDP-G-LRKAL-DPINVTQALNALSKWADLPVCAEAAIA  313 (2710)
T ss_pred             HHhC----ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-H-HHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHH
Confidence            3333    2334555544 445444433333333333 344321 1 12222 22223333344442  34566666655


Q ss_pred             HHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-CCCHHH
Q 009514          168 FSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDV  246 (533)
Q Consensus       168 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~~~~~v  246 (533)
                      |+.=..+++.+.+. ++..++...++-|..=......+. +..+|..=...+++.++.+- ..++..+++.++ =++..+
T Consensus       314 la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~-Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~  390 (2710)
T PRK14707        314 LAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAA-AVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPV  390 (2710)
T ss_pred             HHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHH-HHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchH
Confidence            55444456665432 233345555555554433344444 44444433335556655544 345555555554 345556


Q ss_pred             HHHHHHHHH-HHhhccccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514          247 RSAACMCLR-SVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS  324 (533)
Q Consensus       247 ~~~a~~~L~-~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll  324 (533)
                      ...++..|. .+... ..++..  .+...+...+.-| +=++..+...++.+|..-..+..+.++.+--.++...|-.+.
T Consensus       391 c~~aa~~LA~~l~~d-~~l~~~--~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalS  467 (2710)
T PRK14707        391 CAAAASALAEHVVDD-LELRKG--LDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALS  467 (2710)
T ss_pred             HHHHHHHHHHHhccC-hhhhhh--cchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhh
Confidence            666666664 45544 555555  4444555555544 457888888888888766555555554444344444444455


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 009514          325 KSMDSTIRLNALRALRN  341 (533)
Q Consensus       325 ~~~~~~~~~~al~aL~~  341 (533)
                      +=++..+...+...|..
T Consensus       468 KWPd~p~c~~aa~~La~  484 (2710)
T PRK14707        468 KWPDTPICGQTASALAA  484 (2710)
T ss_pred             cCCCChhHHHHHHHHHH
Confidence            55665655555555543

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.92  E-value=5.1  Score=36.88  Aligned_cols=186  Identities=16%  Similarity=0.190  Sum_probs=111.0

Q ss_pred             chhHHHHHHHHHHhhccchhhhHhhh-hhchHHHHHH-------hcCCC--CHHHHHHHHHH---HHHHhhccccccchh
Q 009514          202 PRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVD-------ALAHD--SSDVRSAACMC---LRSVSRSIKNLSAGS  268 (533)
Q Consensus       202 ~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~l~~-------~L~~~--~~~v~~~a~~~---L~~ls~~~~~~~~~~  268 (533)
                      ++.|+.|+..|+.--..-++..-.+. ..|.+..+++       .+..+  +...-...|.+   +..++.+ +..+.. 
T Consensus         9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~-   86 (262)
T PF04078_consen    9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP-   86 (262)
T ss_dssp             HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH-
T ss_pred             cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH-
Confidence            56678777666654333333333333 3355555444       22332  12222333333   4445665 667766 


Q ss_pred             hhhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC-CchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009514          269 FMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVVD-FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL  342 (533)
Q Consensus       269 ~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l  342 (533)
                      |.++.+.-.|..+|+..     .+.+|....+.++.++.. .++....+.+.+.+|..++.++.+++-.|..|...+..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            88888888888888633     357899999999999873 345667788899999999999998888899999999888


Q ss_pred             hccCCh-------HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514          343 IFLAED-------KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       343 ~~~~~~-------~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~  389 (533)
                      ..+...       ..|..-+....-..+..+..++++.+....+++...++++.
T Consensus       167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            653210       01111111111122333456777888888888888877664

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=93.90  E-value=5.1  Score=39.61  Aligned_cols=273  Identities=18%  Similarity=0.156  Sum_probs=136.8

Q ss_pred             chHHHHhhhc-CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHH-HHHhcCChhhhh
Q 009514           18 NMEFLLSLLN-NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESI-ATIFKNNPEVVS   93 (533)
Q Consensus        18 ~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL-~~l~~~~~~~~~   93 (533)
                      -+..++.=++ +...++|..++--|+.-|.+++.+..+...|..+.+...+.+  ++.....+.-++ ..++.+....  
T Consensus        22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~--   99 (361)
T PF07814_consen   22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM--   99 (361)
T ss_pred             HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch--
Confidence            4566777676 345788888888999888899999999999999999999965  332333333333 3334433222  


Q ss_pred             hhccccCcccHHHHHHHHhcC-ChhhHHHHH-HHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC------C--CC--chh
Q 009514           94 QFVGPDTGRTLSCIIEIVKDR-FARTRLLAS-LCLIVIRNASPCYLQDVGIKTKLINNLLELLD------D--PG--RVG  161 (533)
Q Consensus        94 ~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~------~--~~--~~~  161 (533)
                      .+.  .....+.-++++++-. ...+..... .--.++.+          .....+..+.+.+.      +  +.  .-+
T Consensus       100 ~l~--~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk----------~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~  167 (361)
T PF07814_consen  100 HLL--LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK----------VQQKSRSLCKELLSSGSSWKSPKPPELSPQ  167 (361)
T ss_pred             hhh--hchhHHHHHHHHhccccccccccchhhhhhhhhhH----------HHHHHHHHHHHHHhccccccccCCcccccc
Confidence            110  0122333335555510 000000000 00000000          01112221222221      0  11  112


Q ss_pred             hhHHHHHHhhh--------------cCCHHHHHHHHHcCcHHHHHHhhhc----CC-----CC-----chhHHHHHHHHH
Q 009514          162 DEASFAFSSLI--------------AEKEDMQKLAFEVNGVDKLYNHLQK----GS-----LH-----PRRFEGILLALA  213 (533)
Q Consensus       162 ~~a~~~L~~l~--------------~~~~~~~~~~~~~~~l~~L~~~L~~----~~-----~~-----~~~~~~a~~aL~  213 (533)
                      .-+..++..+.              ...+.+++...+.|++..+++.+.+    ..     ..     ....+.++++|-
T Consensus       168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE  247 (361)
T PF07814_consen  168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE  247 (361)
T ss_pred             cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence            33333333331              1112234445667889999988763    11     00     113455677777


Q ss_pred             HhhccchhhhHhhhhh--chHHHHH----HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh------
Q 009514          214 DMCSKLECCRSRCLSL--QVLKLVV----DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL------  281 (533)
Q Consensus       214 ~l~~~~~~~~~~~~~~--~~l~~l~----~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l------  281 (533)
                      +.+..++.++......  +.++.+.    .......+.....+++.+.|++.+.+..+.. +...++...+..+      
T Consensus       248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~-~~s~~l~~~~~~i~~~~~~  326 (361)
T PF07814_consen  248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEE-FASPKLGQQLGLIVTSFFC  326 (361)
T ss_pred             HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHh-hhhhHhccchHHHHHhhcc
Confidence            7766656555555433  2232222    2222334555788899999999887666555 4443332222111      


Q ss_pred             -hc-------CCCHHHHHHHHHHHHHHhcCCc
Q 009514          282 -LD-------DTSTAVQVAALGAISNIVVDFT  305 (533)
Q Consensus       282 -L~-------~~~~~v~~~a~~aL~nl~~~~~  305 (533)
                       ++       +..-+...-+.+++.|++..+.
T Consensus       327 ~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  327 VLSLPNYVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             cccccccccccccchHHHHHHHhHHHheeeCc
Confidence             11       1123667778888888876543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.75  E-value=0.65  Score=46.67  Aligned_cols=157  Identities=18%  Similarity=0.169  Sum_probs=113.1

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC----HHHHHHHHHHHHHHhcCCch
Q 009514          231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS----TAVQVAALGAISNIVVDFTT  306 (533)
Q Consensus       231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~----~~v~~~a~~aL~nl~~~~~~  306 (533)
                      ....+.+.+.++++.-+..+.+-|..++.... .-.. |+...++..|.++..+++    .++...++.++..+..... 
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~e-fi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEE-FIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHH-HHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            35567788888888888888888988887633 2333 688889999999998653    4777778888877664221 


Q ss_pred             hHHHHHHhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHH
Q 009514          307 RRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN  384 (533)
Q Consensus       307 ~~~~~~~~~~i~~L~~ll~~--~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~  384 (533)
                      ..........+.....+.+-  .+..+-..|+..|-++..++ +..++.+.++-.++.+++.+...+..++..|+..+..
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s-~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGS-DTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC-hHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            11122223344444444432  34557778888888888754 4578888889999999999999999999999999988


Q ss_pred             hhcCCcc
Q 009514          385 LVDGRIN  391 (533)
Q Consensus       385 l~~~~~~  391 (533)
                      +....++
T Consensus       240 l~~~a~~  246 (713)
T KOG2999|consen  240 LFRKAPD  246 (713)
T ss_pred             HHhhCCh
Confidence            8866554

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.72  E-value=2.5  Score=38.83  Aligned_cols=147  Identities=12%  Similarity=0.156  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh
Q 009514          292 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-----STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL  366 (533)
Q Consensus       292 ~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l  366 (533)
                      .|...+.-++. .++.+..+++++..--|..+++..+     +.+|..+++.++.+....+++.-..++....++.-++.
T Consensus        69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~  147 (262)
T PF04078_consen   69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI  147 (262)
T ss_dssp             HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred             HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence            34444445565 5566778888887666667766432     56899999999999987777777788888889999999


Q ss_pred             hCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc------CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHH
Q 009514          367 ICDPEPSVQEQALALVRNLVDGRINSVEYIFAED------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEA  440 (533)
Q Consensus       367 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~------~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  440 (533)
                      ++.++.--+.-|..++..+..++. ..+++....      ..++..++..+...+++..-++.+++-..++.. +..++.
T Consensus       148 me~GselSKtvAtfIlqKIL~dd~-GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~a  225 (262)
T PF04078_consen  148 MEFGSELSKTVATFILQKILLDDV-GLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREA  225 (262)
T ss_dssp             HHHS-HHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHcchh-HHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHH
Confidence            998888888888888887776532 122221110      014444444444446777778888888777754 333443


Q ss_pred             H
Q 009514          441 V  441 (533)
Q Consensus       441 ~  441 (533)
                      +
T Consensus       226 L  226 (262)
T PF04078_consen  226 L  226 (262)
T ss_dssp             H
T ss_pred             H
Confidence            3

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.71  E-value=2.4  Score=45.58  Aligned_cols=194  Identities=16%  Similarity=0.183  Sum_probs=104.6

Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC----CCHHHHHHHHHHHHHHhhcccc
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH----DSSDVRSAACMCLRSVSRSIKN  263 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~----~~~~v~~~a~~~L~~ls~~~~~  263 (533)
                      +..+.+++.+...+.   ..+...|..+.......     ....+..+.++++.    .++.++..|.-+++.+.+..-.
T Consensus       397 v~~i~~~I~~~~~~~---~ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  397 VKFIKDLIKSKKLTD---DEAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHTT-S-H---HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCH---HHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            455666666643222   23444444443321010     12345556666654    3567888888888887543111


Q ss_pred             c---------cchhhhhcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC---
Q 009514          264 L---------SAGSFMNETIVIPLVRLLD----DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM---  327 (533)
Q Consensus       264 ~---------~~~~~~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~---  327 (533)
                      .         +.. .....+++.+...+.    ..+.+-+..++.||+|+-.  +         ..++.+..++...   
T Consensus       469 ~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~  536 (618)
T PF01347_consen  469 NSDSAEFCDPCSR-CIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEV  536 (618)
T ss_dssp             T-----------S-S--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S
T ss_pred             cccccccccccch-hhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhcccc
Confidence            1         111 234456677776664    5677889999999999963  1         3577777777765   


Q ss_pred             CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 009514          328 DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD  405 (533)
Q Consensus       328 ~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~  405 (533)
                      +..+|..|+++|..+....+.         ...+.++++..  ..+.++|..|..+|...   +|..         ..+.
T Consensus       537 ~~~~R~~Ai~Alr~~~~~~~~---------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~---------~~l~  595 (618)
T PF01347_consen  537 PHFIRVAAIQALRRLAKHCPE---------KVREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP---------SVLQ  595 (618)
T ss_dssp             -HHHHHHHHHTTTTGGGT-HH---------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H---------HHHH
T ss_pred             chHHHHHHHHHHHHHhhcCcH---------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH---------HHHH
Confidence            578999999999988553321         22345555554  34677888887555442   2210         0455


Q ss_pred             HHHHHhccCCchhHHHH
Q 009514          406 AVGRQLRIASKAEIEIQ  422 (533)
Q Consensus       406 ~L~~~L~~~~~~~v~~~  422 (533)
                      .+...+...++.+|...
T Consensus       596 ~i~~~l~~E~~~QV~sf  612 (618)
T PF01347_consen  596 RIAQSLWNEPSNQVASF  612 (618)
T ss_dssp             HHHHHHTT-S-HHHHHH
T ss_pred             HHHHHHhhCchHHHHHH
Confidence            55566665455555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.70  E-value=0.66  Score=42.74  Aligned_cols=97  Identities=24%  Similarity=0.277  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514          246 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS  324 (533)
Q Consensus       246 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll  324 (533)
                      ....|...|.-++--++..+.. +.+...++.++.+|+ ..++.++.++..+|..+..+.+.+...+-+.+|+..++.++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~l-F~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKL-FHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHH-HhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            3445667777666655555555 778899999999995 56899999999999998888888888888899999999999


Q ss_pred             cCC--CHHHHHHHHHHHHHhh
Q 009514          325 KSM--DSTIRLNALRALRNLI  343 (533)
Q Consensus       325 ~~~--~~~~~~~al~aL~~l~  343 (533)
                      ++.  +.++|...+..|.-..
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHH
Confidence            875  4677777777776443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=93.50  E-value=4.9  Score=39.97  Aligned_cols=173  Identities=19%  Similarity=0.205  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHH-hcCChhhhhhhccccCcccHHHHHHHHhc-CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHH
Q 009514           72 IQRDASLESIATI-FKNNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN  149 (533)
Q Consensus        72 ~v~~~al~aL~~l-~~~~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~  149 (533)
                      +-+..|+.-|-.| |++.-.+|.+..    +..+..+++.+.+ .+...+..|.+.|..++...+.+..+  -.+-++..
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f----~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D--stE~ai~K  375 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHF----AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD--STEIAICK  375 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHH----HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc--hHHHHHHH
Confidence            4566676656555 444444554332    4567778888876 78889999999999999876532221  12334555


Q ss_pred             HHHhcCCC-CchhhhHH-HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh
Q 009514          150 LLELLDDP-GRVGDEAS-FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL  227 (533)
Q Consensus       150 L~~ll~~~-~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~  227 (533)
                      +++.-.+. +.+...|. .++..++...+..        .+..+..++...  +...-..++..+..+...-+.-.-.-.
T Consensus       376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~~EeL~~l  445 (516)
T KOG2956|consen  376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA--DEPRAVAVIKMLTKLFERLSAEELLNL  445 (516)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC--cchHHHHHHHHHHHHHhhcCHHHHHHh
Confidence            55544443 34444444 4445555555542        233445545443  244556666667776643211111112


Q ss_pred             hhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 009514          228 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS  260 (533)
Q Consensus       228 ~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~  260 (533)
                      -..+.|.+++.-++.+..||..++.||..+...
T Consensus       446 l~diaP~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  446 LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            246889999999999999999999999887543

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.36  E-value=8.5  Score=39.14  Aligned_cols=160  Identities=14%  Similarity=0.168  Sum_probs=108.1

Q ss_pred             HHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCH----HHHHHHHHHHHHHhhcccccc
Q 009514          190 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS----DVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       190 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~----~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      .+.+.+.+++  ...+..++..+..++.+ ...-..+....++..|.+++.++..    .+......++..+-.. ....
T Consensus        87 ~i~e~l~~~~--~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh-gvvs  162 (713)
T KOG2999|consen   87 RIMEILTEGN--NISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH-GVVS  162 (713)
T ss_pred             HHHHHHhCCC--cHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh-ceee
Confidence            4566666664  33444578888888764 4666778888999999999987654    4444444444444222 1122


Q ss_pred             chhhhhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514          266 AGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  343 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~  343 (533)
                      +. .....++.....+.+  ..+..+-..|+..|-++..+.......+.+.--+..|++.++..+..+...|+..+..+.
T Consensus       163 W~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  163 WE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             ee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            22 223334444444443  346678889999998888877767778888889999999999999999999998888888


Q ss_pred             ccCChHhHHHH
Q 009514          344 FLAEDKCKEEI  354 (533)
Q Consensus       344 ~~~~~~~~~~i  354 (533)
                      ...+++-|..+
T Consensus       242 ~~a~~~~R~~~  252 (713)
T KOG2999|consen  242 RKAPDDKRFEM  252 (713)
T ss_pred             hhCChHHHHHH
Confidence            77666544433

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.27  E-value=0.96  Score=41.72  Aligned_cols=98  Identities=16%  Similarity=0.092  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhh
Q 009514          119 RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQ  196 (533)
Q Consensus       119 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~  196 (533)
                      ...|...|.-++-.++. .+..+.+...+..++++++  .++.++..+..+|..+.-+++.+.+.+-+.+|+..++.+++
T Consensus       108 i~~aL~vLQGl~LLHp~-Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPP-SRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHcCch-HHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            44566777777666653 4666778899999999996  35678888888888888899999898888999999999999


Q ss_pred             cCCCCchhHHHHHHHHHHhhc
Q 009514          197 KGSLHPRRFEGILLALADMCS  217 (533)
Q Consensus       197 ~~~~~~~~~~~a~~aL~~l~~  217 (533)
                      +.+.+.+++..++..|.-...
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHc
Confidence            887667777777776665443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=93.25  E-value=13  Score=39.37  Aligned_cols=280  Identities=13%  Similarity=0.108  Sum_probs=150.1

Q ss_pred             CcHHHHHHhhhcCC------CCchhHHHHHHHHHHhhc--cchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009514          186 NGVDKLYNHLQKGS------LHPRRFEGILLALADMCS--KLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV  257 (533)
Q Consensus       186 ~~l~~L~~~L~~~~------~~~~~~~~a~~aL~~l~~--~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~l  257 (533)
                      |.++-+.+.|.+..      .++...+.|++.++++..  .....-..+.+.=++++++..++++..-++..||..+..+
T Consensus       408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~  487 (970)
T COG5656         408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI  487 (970)
T ss_pred             hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence            55677777774431      124456888888888765  2222233455556788888899999999999999999988


Q ss_pred             hhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh--CcHHHHHHhhcCCCHHHHHHH
Q 009514          258 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL--GGVKLLVQLSKSMDSTIRLNA  335 (533)
Q Consensus       258 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a  335 (533)
                      +...+..    -......+.....+++.+-.|+..|+-|+.-+..+. .....+.++  +.++.|+.+.+.-+.+.....
T Consensus       488 eeDfkd~----~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~v  562 (970)
T COG5656         488 EEDFKDN----GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV  562 (970)
T ss_pred             HHhcccc----hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence            6543221    123344556667778888899999999998887654 222222221  334444454444333333333


Q ss_pred             HHHH-HHhhccCCh---HhHHHHHHhhcHHHHHhhhCCC------ChhHHHHHHHHHHHhhcC--CcchHHHHHhhcCc-
Q 009514          336 LRAL-RNLIFLAED---KCKEEIFMELTASLLASLICDP------EPSVQEQALALVRNLVDG--RINSVEYIFAEDGI-  402 (533)
Q Consensus       336 l~aL-~~l~~~~~~---~~~~~i~~~~~~~~l~~lL~~~------~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~~~~-  402 (533)
                      ...+ ......-+|   +....+.+. .+.....++..+      ..+=+..|.+.|+.+...  +-++.-.++++.-. 
T Consensus       563 Me~fVe~fseELspfa~eLa~~Lv~q-Flkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~s  641 (970)
T COG5656         563 MESFVEYFSEELSPFAPELAGSLVRQ-FLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVS  641 (970)
T ss_pred             HHHHHHHhHHhhchhHHHHHHHHHHH-HHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            3222 222211111   111111111 122223333322      135566777777766422  00111112221100 


Q ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh-hHHHHHHHHHHhhcC
Q 009514          403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS-RLRTAAVWAVLNLTC  481 (533)
Q Consensus       403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~-~v~~~a~~~L~~l~~  481 (533)
                      ..+.+.-.|.+ .....-.+|+-.+-+.+-... ....++        -|+...+.+++.++.. ..-+++.-++.|+..
T Consensus       642 lypvi~Filkn-~i~dfy~Ea~dildg~tf~sk-eI~pim--------wgi~Ell~~~l~~~~t~~y~ee~~~al~nfit  711 (970)
T COG5656         642 LYPVISFILKN-EISDFYQEALDILDGYTFMSK-EIEPIM--------WGIFELLLNLLIDEITAVYSEEVADALDNFIT  711 (970)
T ss_pred             HHHHHHHHHhh-hHHHHHHHHHHHHhhhhHHHH-Hhhhhh--------hHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence            22222222333 555677778888776654322 122332        2566666677776663 667788888888875

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=93.23  E-value=15  Score=40.12  Aligned_cols=181  Identities=14%  Similarity=0.156  Sum_probs=105.4

Q ss_pred             cccchHHHHhhhcCCC-----cchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc----C-C----hHHHHHHHHH
Q 009514           15 QEENMEFLLSLLNNES-----ENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG----G-S----LIQRDASLES   80 (533)
Q Consensus        15 ~~~~i~~L~~lL~~~~-----~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~----~-~----~~v~~~al~a   80 (533)
                      +.||+..|++++.+-.     ...-....++|..+|+.+.+|..+.+.|+++.|++.|.    . .    ..+-+.-+..
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            6789999999999633     34555688899999999999999999999999999885    1 2    3455555555


Q ss_pred             HHHHhcCChh-hhhhh---cccc-----CcccHHHHHHHHhcC----ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhH
Q 009514           81 IATIFKNNPE-VVSQF---VGPD-----TGRTLSCIIEIVKDR----FARTRLLASLCLIVIRNASPCYLQDVGIKTKLI  147 (533)
Q Consensus        81 L~~l~~~~~~-~~~~~---~~~~-----~~~~i~~l~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i  147 (533)
                      +..+..+... .....   ....     ...-+..+++.+.++    ++.+....++.|-.+...+..  .+..+-..+-
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e--~m~~Lv~~F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEE--KMDALVEHFK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHH--HHHHHHHHHH
Confidence            5544322111 11100   0010     122356666666543    466777778888888776532  2222222222


Q ss_pred             HHHHHhcC-CCC--chhhhHHHHHHhhhc----CC--HHHHHHHHHcCcHHHHHHhhhcC
Q 009514          148 NNLLELLD-DPG--RVGDEASFAFSSLIA----EK--EDMQKLAFEVNGVDKLYNHLQKG  198 (533)
Q Consensus       148 ~~L~~ll~-~~~--~~~~~a~~~L~~l~~----~~--~~~~~~~~~~~~l~~L~~~L~~~  198 (533)
                      |.+ ++=. +..  .-...-..++..++.    +.  ..++..+++.|.+...+++|...
T Consensus       273 p~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~  331 (802)
T PF13764_consen  273 PYL-DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH  331 (802)
T ss_pred             Hhc-ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Confidence            222 2111 111  000111333333332    22  35677788999999999988775

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.13  E-value=1.9  Score=37.76  Aligned_cols=143  Identities=18%  Similarity=0.255  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHhhccCChHhHH----HHH------Hhhc-HHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhh
Q 009514          331 IRLNALRALRNLIFLAEDKCKE----EIF------MELT-ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE  399 (533)
Q Consensus       331 ~~~~al~aL~~l~~~~~~~~~~----~i~------~~~~-~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~  399 (533)
                      +|..|+.+|..++...++..--    .++      .... ...+.-++.|+++++|..|+.++..+.++......+.-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            5677777777776542221000    000      0112 2334445679999999999999999998853322222111


Q ss_pred             cC--------------c---hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHH--HHHHHhhHhhhhhhHHHHHHh
Q 009514          400 DG--------------I---ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE--AVMDQLLLRAENKAQSCIIKF  460 (533)
Q Consensus       400 ~~--------------~---~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~lv~~  460 (533)
                      .+              +   +-..|...|+...+..+..+.+.++..+....+.++-  .++        ..++..+..+
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll--------~~~v~~v~~~  153 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL--------TEVVTQVRPL  153 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH--------HHHHHHHHHH
Confidence            11              0   2344555566656677888888999888887764332  122        3455666667


Q ss_pred             hccCChhHHHHHHHHHHhhcC
Q 009514          461 LQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       461 L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      +.+.|.+++..+..++..+..
T Consensus       154 l~~~d~~v~v~~l~~~~~l~s  174 (182)
T PF13251_consen  154 LRHRDPNVRVAALSCLGALLS  174 (182)
T ss_pred             HhcCCCcHHHHHHHHHHHHHc
Confidence            788999999999999988874

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=93.08  E-value=2.8  Score=45.59  Aligned_cols=176  Identities=15%  Similarity=0.129  Sum_probs=117.1

Q ss_pred             CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHh-cCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHH
Q 009514          201 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLV  279 (533)
Q Consensus       201 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~-L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv  279 (533)
                      .|.-|..|+..+.....+.. ........+.+-.+++. +.+.|-.+...++.+|..++.........  ...+..+.++
T Consensus       266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~--~~~~v~p~ll  342 (815)
T KOG1820|consen  266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK--YAKNVFPSLL  342 (815)
T ss_pred             chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH--HHHhhcchHH
Confidence            46677778877777665432 11111223444444444 45778899999999999988653333222  4457788899


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhc
Q 009514          280 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT  359 (533)
Q Consensus       280 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~  359 (533)
                      .-+.+....++..+..++-.....+..       ....+.+...+++.++..+......+.......++.+-..---...
T Consensus       343 d~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l  415 (815)
T KOG1820|consen  343 DRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTL  415 (815)
T ss_pred             HHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHH
Confidence            988888888888888777655532211       2356777888999999999988877777665443211111112235


Q ss_pred             HHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514          360 ASLLASLICDPEPSVQEQALALVRNLV  386 (533)
Q Consensus       360 ~~~l~~lL~~~~~~v~~~a~~~L~~l~  386 (533)
                      .+.++....|.+.+||..+..++..+.
T Consensus       416 ~p~~~~~~~D~~~~VR~Aa~e~~~~v~  442 (815)
T KOG1820|consen  416 VPHLIKHINDTDKDVRKAALEAVAAVM  442 (815)
T ss_pred             hHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence            788888889999999999998887665

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=92.98  E-value=0.53  Score=35.99  Aligned_cols=72  Identities=19%  Similarity=0.130  Sum_probs=56.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514          317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN  391 (533)
Q Consensus       317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~  391 (533)
                      ....+..++++.+.+|..++..|.++....+   .........+..+...|+++|+-|--+|+..|..++...|+
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            4556677788889999999999999987554   11222345577788899999999999999999999987664

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.90  E-value=2  Score=38.05  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=82.1

Q ss_pred             CCChhHHHHHHHHHHHhhcCCcchHHHHHhhc--------------CchHHHHHHHhcc-----CCchhHHHHHHHHHHH
Q 009514          369 DPEPSVQEQALALVRNLVDGRINSVEYIFAED--------------GIILDAVGRQLRI-----ASKAEIEIQGMYVLGN  429 (533)
Q Consensus       369 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--------------~~~~~~L~~~L~~-----~~~~~v~~~a~~~L~~  429 (533)
                      +++...-..++.+|+|++..+. ....+++..              +..+..|+..+..     .....-....+.++.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            4444555667778888887543 233333322              1255556655543     2334556778899999


Q ss_pred             hccCChhhHHHHHHHhhHhhhhhh--HHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHH--CCcHHHHHh
Q 009514          430 VATGKESHKEAVMDQLLLRAENKA--QSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHD--AGIVSHVKN  505 (533)
Q Consensus       430 l~~~~~~~~~~~~~~~~~~~~~~~--~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~--~g~~~~L~~  505 (533)
                      ++.- +..|+.+++.     ..+.  +..|..++.+.+..=|..++++|-|+++    ....|...+.+  .+++|.|+-
T Consensus        85 lS~~-~~gR~~~l~~-----~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF----d~~~H~~LL~~~~~~iLp~LLl  154 (192)
T PF04063_consen   85 LSQL-PEGRQFFLDP-----QRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF----DTDSHEWLLSDDEVDILPYLLL  154 (192)
T ss_pred             hcCC-HHHHHHHhCc-----hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc----cHhHHHHhcCchhhhhHHHHHh
Confidence            9964 5578877762     2333  6778888888877778899999999998    33344444443  467777776


Q ss_pred             hhc
Q 009514          506 MVN  508 (533)
Q Consensus       506 ll~  508 (533)
                      -+-
T Consensus       155 PLa  157 (192)
T PF04063_consen  155 PLA  157 (192)
T ss_pred             hcc
Confidence            664

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.78  E-value=5.2  Score=41.76  Aligned_cols=132  Identities=14%  Similarity=0.211  Sum_probs=97.6

Q ss_pred             CCHHHHHHHHHHHHHH-hhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHH
Q 009514          242 DSSDVRSAACMCLRSV-SRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKL  319 (533)
Q Consensus       242 ~~~~v~~~a~~~L~~l-s~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~  319 (533)
                      .++.++.+|.-+|..+ +.+ .+.      -...+|.|+..+. +|+|.+|..|+-.++-++..+....    + ..-..
T Consensus       908 sd~~lq~aA~l~L~klMClS-~~f------c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~----d-e~t~y  975 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLS-FEF------CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA----D-EHTHY  975 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHh-HHH------HHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhh----H-HHHHH
Confidence            6889999998888766 433 222      2356888999886 8999999999999988876554322    1 23456


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514          320 LVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN  391 (533)
Q Consensus       320 L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~  391 (533)
                      |.+-+.+.+..+|+.++.++..+.....      +--.|-.+.+..+|.++|..+...|=..+..++..+..
T Consensus       976 LyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098         976 LYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred             HHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence            6777888899999999999999865322      12235567888999999999998888888888766543

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.66  E-value=0.69  Score=43.21  Aligned_cols=140  Identities=19%  Similarity=0.209  Sum_probs=94.2

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 009514          231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST  310 (533)
Q Consensus       231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~  310 (533)
                      .+...+..|.+.+|.....+...++.|+.-++.....  .-..++..+++-+++....|-..|+.++.-+......   .
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~--~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~---~  163 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNP--MLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---S  163 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---H
Confidence            4666677888889988888888888887654432222  2234566677777888889999999999888754433   2


Q ss_pred             HHHhCcHHHH-HHhhcC---CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHh
Q 009514          311 FIRLGGVKLL-VQLSKS---MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL  385 (533)
Q Consensus       311 ~~~~~~i~~L-~~ll~~---~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l  385 (533)
                      +.+  .+..+ ..+++.   ++.-+++.|-.+|..++.+..|        ...++.|...+.+.++.++..++....+.
T Consensus       164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--------QKLLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence            222  23333 344443   3456899999999999987765        22355666677788888887776444433

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.56  E-value=0.94  Score=32.78  Aligned_cols=66  Identities=14%  Similarity=0.233  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCC
Q 009514          420 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG  498 (533)
Q Consensus       420 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g  498 (533)
                      .+.++|+++++++...  --.+++      +.++++.++++.. ++...+|-.|.++|+-++.     +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss~~--G~~lL~------~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-----T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPL--GIQLLD------ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-----TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChH--HHHHHh------hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-----CHHHHHHHHHcC
Confidence            4679999999987432  333444      3789999999987 4567999999999999984     556666666655

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.16  E-value=5.7  Score=41.57  Aligned_cols=196  Identities=11%  Similarity=0.076  Sum_probs=109.8

Q ss_pred             HHhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhccC-ChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC-
Q 009514          312 IRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLA-EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG-  388 (533)
Q Consensus       312 ~~~~~i~~L~~-ll~~~~~~~~~~al~aL~~l~~~~-~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~-  388 (533)
                      ++.|.+.-++. .++.+...+....-..|+.+.... -...-++++-...-+.+.+-|+-++..||.+|+..+.++.-- 
T Consensus       126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            45566666653 344333233322223344332211 000112333334457788888999999999999999988733 


Q ss_pred             Ccc----hHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-c
Q 009514          389 RIN----SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-S  463 (533)
Q Consensus       389 ~~~----~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~  463 (533)
                      +|+    ..+.+++..   ...+.++|.+ +-+.|+..|.--++.+.+..    ..++..   ..-.+++..+..-+. +
T Consensus       206 dpd~~~e~mD~i~~kQ---f~~l~~LL~d-~~p~VRS~a~~gv~k~~s~f----We~iP~---~i~~~ll~kI~d~~a~d  274 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQKQ---FEELYSLLED-PYPMVRSTAILGVCKITSKF----WEMIPP---TILIDLLKKITDELAFD  274 (1005)
T ss_pred             CCCccHHHHHHHHHHH---HHHHHHHhcC-CCchHHHHHHHHHHHHHHHH----HHHcCH---HHHHHHHHHHHHHhhhc
Confidence            222    123333332   4567777877 88999988776666555322    222210   000122233333332 3


Q ss_pred             CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHH
Q 009514          464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF  525 (533)
Q Consensus       464 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~  525 (533)
                      +..+||......|..+..+  +.+..    +.+. ++|.|-..+.|.++.||..+..-|-.|
T Consensus       275 t~s~VR~svf~gl~~~l~n--p~sh~----~le~-~Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  275 TSSDVRCSVFKGLPMILDN--PLSHP----LLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             cchheehhHhcCcHHHHcC--ccchh----HHHH-HHHhcchhhhccchhHHHHHHHHHHHH
Confidence            4568999999999999863  22221    2222 367777788888888888777766655

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=92.10  E-value=11  Score=35.63  Aligned_cols=204  Identities=14%  Similarity=0.170  Sum_probs=129.9

Q ss_pred             HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhH----hhh-hhchHHHHHHhcCCCCHHHHHHHHHHH
Q 009514          180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS----RCL-SLQVLKLVVDALAHDSSDVRSAACMCL  254 (533)
Q Consensus       180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~----~~~-~~~~l~~l~~~L~~~~~~v~~~a~~~L  254 (533)
                      ..+.+.|.++.+++.+....  .+.+..+.....++-...-..|.    .+. ....+..+++.-.. .+++-..+-..+
T Consensus        73 qef~~~~~l~~lI~~l~~l~--fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~ml  149 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLE--FESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNML  149 (342)
T ss_pred             HHHHhCCchHHHHHhhhccc--chhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHH
Confidence            45667788888998887753  55566666666666543222222    121 22455555555111 344444444444


Q ss_pred             HHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc----HHHHHHhhcCCCHH
Q 009514          255 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG----VKLLVQLSKSMDST  330 (533)
Q Consensus       255 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~----i~~L~~ll~~~~~~  330 (533)
                      +...+. +.+.+- +...........+++.+.-++..-|..+...+..........++..+.    .+..-.++++.+--
T Consensus       150 rEcirh-e~Laki-iL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv  227 (342)
T KOG1566|consen  150 RECIRH-EFLAKI-ILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYV  227 (342)
T ss_pred             HHHHhh-HHHHHH-HHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence            444443 344433 566677777888888888888888888888877655443334444332    33355678889988


Q ss_pred             HHHHHHHHHHHhhccCChH--hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          331 IRLNALRALRNLIFLAEDK--CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       331 ~~~~al~aL~~l~~~~~~~--~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                      ++..++.+++.+..+.++.  ..+.+.+...+..+..+|+++...+|-.|.....-...+
T Consensus       228 tkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn  287 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN  287 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence            9999999999987655432  334455556678888999999999999998766655543

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=91.91  E-value=11  Score=35.31  Aligned_cols=213  Identities=13%  Similarity=0.082  Sum_probs=121.0

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC---CCCchhhhHHHHHHhhhcC---CHHHHH
Q 009514          107 IIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---DPGRVGDEASFAFSSLIAE---KEDMQK  180 (533)
Q Consensus       107 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~a~~~L~~l~~~---~~~~~~  180 (533)
                      +-.-+.++++.+|..|..+|..+...-+.    ......-+..|++++.   ++...-..+...+..+...   ..+...
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~----~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~   79 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPP----DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAV   79 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCH----hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHH
Confidence            33457788999999999999988775432    1233445666666664   2322222334444444422   111111


Q ss_pred             HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh--hchHHHHHHhcCC-CCHHHHHHHHHHHHHH
Q 009514          181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDALAH-DSSDVRSAACMCLRSV  257 (533)
Q Consensus       181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~l~~~L~~-~~~~v~~~a~~~L~~l  257 (533)
                           ..+..+.+...-+......|..+...+..+..+.   +..+..  .+.+..+++.++. .||+-...+.+.+..+
T Consensus        80 -----~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i  151 (262)
T PF14500_consen   80 -----KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVI  151 (262)
T ss_pred             -----HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence                 1112222211111223456778888888776432   222332  3577888888875 4898888888888877


Q ss_pred             hhccccccchhhhhcCcHHHHHHhhc-------CC---CH--HHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc
Q 009514          258 SRSIKNLSAGSFMNETIVIPLVRLLD-------DT---ST--AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK  325 (533)
Q Consensus       258 s~~~~~~~~~~~~~~~~i~~Lv~lL~-------~~---~~--~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~  325 (533)
                      ....+        -....+.+.+.+.       .+   |+  -.++.-..+|.+.....+.     ...-.+|.|++-+.
T Consensus       152 ~~~~~--------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~  218 (262)
T PF14500_consen  152 LQEFD--------ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLD  218 (262)
T ss_pred             HHhcc--------cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHc
Confidence            65522        1345555666552       11   22  2233333444433322222     22356889999999


Q ss_pred             CCCHHHHHHHHHHHHHhhc
Q 009514          326 SMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       326 ~~~~~~~~~al~aL~~l~~  344 (533)
                      ++.+.+|..++.+|...+.
T Consensus       219 s~~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  219 STSPSVKLDSLQTLKACIE  237 (262)
T ss_pred             CCCcHHHHHHHHHHHHHHH
Confidence            9999999999999988764

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.88  E-value=1.7  Score=33.16  Aligned_cols=71  Identities=25%  Similarity=0.318  Sum_probs=53.4

Q ss_pred             HHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCCh
Q 009514          360 ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE  435 (533)
Q Consensus       360 ~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~  435 (533)
                      ++..+..+.|+.+.+|..++..|+.+.......+..+  ..  ++..+...|.+ +++-|.-+|+..+..++...+
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~--~~--il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p   75 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDI--PK--ILDLFLSQLKD-EDSYVYLNAIKGLAALADRHP   75 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhH--HH--HHHHHHHHcCC-CCchHHHHHHHHHHHHHHHCh
Confidence            4455667788999999999999999997754111111  11  67777788888 899999999999999986554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=91.88  E-value=8.7  Score=41.36  Aligned_cols=345  Identities=15%  Similarity=0.092  Sum_probs=157.5

Q ss_pred             hhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHH----
Q 009514           33 VSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCII----  108 (533)
Q Consensus        33 v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~----  108 (533)
                      ..-.+.+.|+.++-....-..+++.||+..|+.+=..+... .-.-.||.++.+..... +++.-. .-..|..++    
T Consensus       369 l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~~~-~g~s~cly~~~~~q~~m-ervc~~-p~~v~~~vv~~~~  445 (1516)
T KOG1832|consen  369 LLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETF-YGLSSCLYTIGSLQGIM-ERVCAL-PLVVIHQVVKLAI  445 (1516)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchhhh-hhHHHHHHHHhhhhhHH-HHHhhc-cHHHHHHHHHHHH
Confidence            34456677777665666667788899888777665433211 11123444444332222 222110 012333333    


Q ss_pred             HHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-------C-----Cchhh--------hHHHHH
Q 009514          109 EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-------P-----GRVGD--------EASFAF  168 (533)
Q Consensus       109 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-------~-----~~~~~--------~a~~~L  168 (533)
                      .++.-....-+.+++.++.-.....  ...+.+-.+..+..|+.++++       +     ++.+.        ..+.+|
T Consensus       446 ~l~~cs~~~~~~~~~~ff~~~f~fr--ail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~al  523 (1516)
T KOG1832|consen  446 ELLDCSQDQARKNSALFFAAAFVFR--AILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFAL  523 (1516)
T ss_pred             HHHhcchhhccchHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHH
Confidence            3554333333444443333211110  123444456778888887751       1     11111        122222


Q ss_pred             Hhhh-----cCCHHHHHHHHHcCcHHHHHHhhhcCCCCch----hHHHHHHHHHHhhccchhh-------hHhhhhhchH
Q 009514          169 SSLI-----AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPR----RFEGILLALADMCSKLECC-------RSRCLSLQVL  232 (533)
Q Consensus       169 ~~l~-----~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~----~~~~a~~aL~~l~~~~~~~-------~~~~~~~~~l  232 (533)
                      ..-.     -..+..++.-...++.+..+.-+.....+..    ..+..++-+-.+-...+..       ...+.+.+++
T Consensus       524 R~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v  603 (1516)
T KOG1832|consen  524 RQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGV  603 (1516)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHH
Confidence            2111     1111112222223344444433333322222    2233344333333222211       1235566788


Q ss_pred             HHHHHhcCCC-C-------HHHHHHHHHHHHHHhhccccccchhhh--------hcCcHHHHHHhhc----CCCHHHHHH
Q 009514          233 KLVVDALAHD-S-------SDVRSAACMCLRSVSRSIKNLSAGSFM--------NETIVIPLVRLLD----DTSTAVQVA  292 (533)
Q Consensus       233 ~~l~~~L~~~-~-------~~v~~~a~~~L~~ls~~~~~~~~~~~~--------~~~~i~~Lv~lL~----~~~~~v~~~  292 (533)
                      ..++++..-+ +       .+....|...|+.+..- +..+.. +.        ...++..+++.-.    ..|++++..
T Consensus       604 ~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~-La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~  681 (1516)
T KOG1832|consen  604 VTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKA-LAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQP  681 (1516)
T ss_pred             HHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHH-HHHHHhhcccccCceEEEeecccccccccCHHHHHH
Confidence            8888877521 2       24455566666554332 222222 11        1123333433322    238999999


Q ss_pred             HHHHHHHHhcCCchhHHHHHHh-C---cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC
Q 009514          293 ALGAISNIVVDFTTRRSTFIRL-G---GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC  368 (533)
Q Consensus       293 a~~aL~nl~~~~~~~~~~~~~~-~---~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~  368 (533)
                      |+.+|.|+...++.++...+.. |   +-+.. .+=..+.....++.+.-..           ..+....|+..|++||+
T Consensus       682 AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~-~l~~~~ks~~le~~l~~mw-----------~~Vr~ndGIkiLl~Ll~  749 (1516)
T KOG1832|consen  682 ALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI-FLGAGTKSAKLEQVLRQMW-----------EAVRGNDGIKILLKLLQ  749 (1516)
T ss_pred             HHhhhheeecCCCCcchhhhhhccccCCCccc-cccCCCchHHHHHHHHHHH-----------HHHhcCccHHHHHHHHh
Confidence            9999999998776655443321 0   00000 0000111122222222222           23334457899999987


Q ss_pred             CCC-----hhHHHHHHHHHHHhhcCCcchHHHHHh
Q 009514          369 DPE-----PSVQEQALALVRNLVDGRINSVEYIFA  398 (533)
Q Consensus       369 ~~~-----~~v~~~a~~~L~~l~~~~~~~~~~i~~  398 (533)
                      -..     ..++.-|+.+|.-|+..+  .+.+++.
T Consensus       750 ~k~P~t~aD~IRalAc~~L~GLaR~~--tVrQIlt  782 (1516)
T KOG1832|consen  750 YKNPPTTADCIRALACRVLLGLARDD--TVRQILT  782 (1516)
T ss_pred             ccCCCCcHHHHHHHHHHHHhccccCc--HHHHHHH
Confidence            433     468888999998888764  3444443

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.78  E-value=5.5  Score=40.78  Aligned_cols=101  Identities=16%  Similarity=0.172  Sum_probs=70.5

Q ss_pred             cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh-Hh
Q 009514          272 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED-KC  350 (533)
Q Consensus       272 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~-~~  350 (533)
                      .|++..++..+.+++..|+..++..|+-+.....+..+.+. .|.+..|.+-+.+..+.+|..|+.+|+.+-....+ ++
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen  168 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN  168 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence            35566677777889999999999999999876655444333 57778888777778889999999999987543221 11


Q ss_pred             HHHHHHhhcHHHHHhhh-CCCChhHHHHHHH
Q 009514          351 KEEIFMELTASLLASLI-CDPEPSVQEQALA  380 (533)
Q Consensus       351 ~~~i~~~~~~~~l~~lL-~~~~~~v~~~a~~  380 (533)
                      +       ....++.++ .+++.+|+..|+.
T Consensus       169 ~-------~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         169 R-------IVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             H-------HHHHHHHHHhcCcHHHHHHHHHH
Confidence            1       122344444 3778888887753

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.74  E-value=8.9  Score=40.78  Aligned_cols=159  Identities=21%  Similarity=0.253  Sum_probs=92.9

Q ss_pred             hHHHHHHhcCCC----CHHHHHHHHHHHHHHhhc-cccccch-hhhhcCcHHHHHHhhc----CCCHHHHHHHHHHHHHH
Q 009514          231 VLKLVVDALAHD----SSDVRSAACMCLRSVSRS-IKNLSAG-SFMNETIVIPLVRLLD----DTSTAVQVAALGAISNI  300 (533)
Q Consensus       231 ~l~~l~~~L~~~----~~~v~~~a~~~L~~ls~~-~~~~~~~-~~~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~nl  300 (533)
                      .+..+.++++++    ++.++..+.-+++++.+. +.+.... ......+++.+.+.|.    ..+.+-+...+.+|+|+
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            466677777643    456788888888877652 1111100 0122456677766663    35666788899999998


Q ss_pred             hcCCchhHHHHHHhCcHHHHHHhhc---CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHH
Q 009514          301 VVDFTTRRSTFIRLGGVKLLVQLSK---SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQ  375 (533)
Q Consensus       301 ~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~  375 (533)
                      ...           ..++.+..++.   ..+..+|..|+++|..++...+..         ..+.++++..  ..++++|
T Consensus       474 g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~---------v~~~l~~i~~n~~e~~EvR  533 (574)
T smart00638      474 GHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK---------VQEVLLPIYLNRAEPPEVR  533 (574)
T ss_pred             CCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH---------HHHHHHHHHcCCCCChHHH
Confidence            742           22344444444   235679999999999887543322         2344555554  4567888


Q ss_pred             HHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHH
Q 009514          376 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI  421 (533)
Q Consensus       376 ~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~  421 (533)
                      ..|+.+|...   +|...         .+..+...+...++.+|..
T Consensus       534 iaA~~~lm~t---~P~~~---------~l~~ia~~l~~E~~~QV~s  567 (574)
T smart00638      534 MAAVLVLMET---KPSVA---------LLQRIAELLNKEPNLQVAS  567 (574)
T ss_pred             HHHHHHHHhc---CCCHH---------HHHHHHHHHhhcCcHHHHH
Confidence            8887655433   22110         4555656666545555543

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=91.74  E-value=1.7  Score=46.76  Aligned_cols=170  Identities=19%  Similarity=0.175  Sum_probs=99.5

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCCch
Q 009514          231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD----TSTAVQVAALGAISNIVVDFTT  306 (533)
Q Consensus       231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~----~~~~v~~~a~~aL~nl~~~~~~  306 (533)
                      .+..+.+++......-. .+...|..+.......      ....+..+..+++.    .++.++..|.-+++.++.....
T Consensus       396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~P------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRP------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCC------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            56667777765432222 2445555554432111      23456667777754    4677888888888888753211


Q ss_pred             hH---------HHHHHhCcHHHHHHhhc----CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCC---
Q 009514          307 RR---------STFIRLGGVKLLVQLSK----SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP---  370 (533)
Q Consensus       307 ~~---------~~~~~~~~i~~L~~ll~----~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~---  370 (533)
                      ..         ...+....++.+...+.    ..+..-+..++.||+|+-..            ..++.+..++.+.   
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~------------~~i~~l~~~i~~~~~~  536 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP------------ESIPVLLPYIEGKEEV  536 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G------------GGHHHHHTTSTTSS-S
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc------------hhhHHHHhHhhhcccc
Confidence            10         11122345555554444    45667788999999999432            2478888888766   


Q ss_pred             ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-CCchhHHHHHHHHHHH
Q 009514          371 EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGN  429 (533)
Q Consensus       371 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~-~~~~~v~~~a~~~L~~  429 (533)
                      +..+|..|+++|+.+....++.          +.+.+.+++.+ ..++++|..|..+|..
T Consensus       537 ~~~~R~~Ai~Alr~~~~~~~~~----------v~~~l~~I~~n~~e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  537 PHFIRVAAIQALRRLAKHCPEK----------VREILLPIFMNTTEDPEVRIAAYLILMR  586 (618)
T ss_dssp             -HHHHHHHHHTTTTGGGT-HHH----------HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhcCcHH----------HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence            6889999999999987776543          34455555544 2467899999888765

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=91.74  E-value=4.5  Score=35.37  Aligned_cols=142  Identities=18%  Similarity=0.217  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhhccc-ccc---chhh------hhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 009514          246 VRSAACMCLRSVSRSIK-NLS---AGSF------MNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL  314 (533)
Q Consensus       246 v~~~a~~~L~~ls~~~~-~~~---~~~~------~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~  314 (533)
                      +|..|..+|..+++..+ ..-   +..+      ...+.-+.|+. ++.|+++++|..|+.++..+..+...+-...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            67788888888876522 110   0001      12334455655 5579999999999999999987754432111110


Q ss_pred             -------------------CcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhH--HHHHHhhcHHHHHhhhCCCCh
Q 009514          315 -------------------GGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCK--EEIFMELTASLLASLICDPEP  372 (533)
Q Consensus       315 -------------------~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~--~~i~~~~~~~~l~~lL~~~~~  372 (533)
                                         ..-..|+..+..+ +..+....+.++..++... |..|  ..++.. .+..+..++.+.|.
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t-PY~rL~~~ll~~-~v~~v~~~l~~~d~  159 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT-PYHRLPPGLLTE-VVTQVRPLLRHRDP  159 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC-ChhhcCHhHHHH-HHHHHHHHHhcCCC
Confidence                               1223344445443 5667778888888887644 4333  222222 34566667778899


Q ss_pred             hHHHHHHHHHHHhhcCC
Q 009514          373 SVQEQALALVRNLVDGR  389 (533)
Q Consensus       373 ~v~~~a~~~L~~l~~~~  389 (533)
                      +++..++.++..+....
T Consensus       160 ~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  160 NVRVAALSCLGALLSVQ  176 (182)
T ss_pred             cHHHHHHHHHHHHHcCC
Confidence            99999888888776553

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=91.54  E-value=15  Score=36.30  Aligned_cols=149  Identities=18%  Similarity=0.108  Sum_probs=82.2

Q ss_pred             hHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHH-HhhhcCCCCchhHHHHHHHHHHhhcc
Q 009514          142 IKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-NHLQKGSLHPRRFEGILLALADMCSK  218 (533)
Q Consensus       142 ~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-~~L~~~~~~~~~~~~a~~aL~~l~~~  218 (533)
                      .+.+-.+.+-+-++  |...-+..|...+..+++..+..-..++ .+.+..++ ++-.++..++..++.|+..++.++..
T Consensus       207 fEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k  285 (370)
T PF08506_consen  207 FEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASK  285 (370)
T ss_dssp             HHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBS
T ss_pred             HccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhh
Confidence            33444555555454  2344567777888888754332211111 11122222 12224445688899999999999876


Q ss_pred             chhhh------------HhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514          219 LECCR------------SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  286 (533)
Q Consensus       219 ~~~~~------------~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  286 (533)
                      ....+            ..+....++|-|. -=.+..|-++..|++.+..+....+.   .  .-.+++|.++..|.+++
T Consensus       286 ~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~--~l~~~~~~l~~~L~~~~  359 (370)
T PF08506_consen  286 GSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---E--QLLQIFPLLVNHLQSSS  359 (370)
T ss_dssp             S--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---H--HHHHHHHHHHHHTTSS-
T ss_pred             hccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---H--HHHHHHHHHHHHhCCCC
Confidence            53221            1122223334333 11145678899999999888654221   2  33468999999999999


Q ss_pred             HHHHHHHHHHH
Q 009514          287 TAVQVAALGAI  297 (533)
Q Consensus       287 ~~v~~~a~~aL  297 (533)
                      .-|...|+.++
T Consensus       360 ~vv~tyAA~~i  370 (370)
T PF08506_consen  360 YVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cchhhhhhhhC
Confidence            99999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=91.49  E-value=9.8  Score=41.53  Aligned_cols=188  Identities=12%  Similarity=0.094  Sum_probs=120.4

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514          231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRS  309 (533)
Q Consensus       231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~  309 (533)
                      +.+.+..-+.+.+|.-|..|+.-+.....+.. .... -...+.+..+++.. .+.+..+...++.+|..++........
T Consensus       254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            44555566678899999888887776654422 1111 12234444455543 477889999999999888875554432


Q ss_pred             HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514          310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~  389 (533)
                      ... .+..+.+..-+......++...+.++...+....        -....+.+..++.+.++.+++.+...+.......
T Consensus       332 ~~~-~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~  402 (815)
T KOG1820|consen  332 KYA-KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL  402 (815)
T ss_pred             HHH-HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence            222 4678889988888888888887777766654221        1123567788899999999999887776665443


Q ss_pred             cc-hHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          390 IN-SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       390 ~~-~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                      +. ....-.-  +.+.+.++....+ .+..|+..+..+++-+..
T Consensus       403 ~~~~~~~~t~--~~l~p~~~~~~~D-~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  403 GPKTVEKETV--KTLVPHLIKHIND-TDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CCcCcchhhH--HHHhHHHhhhccC-CcHHHHHHHHHHHHHHHH
Confidence            21 1100000  1155666665555 788999998888776553

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.38  E-value=17  Score=36.53  Aligned_cols=138  Identities=14%  Similarity=0.094  Sum_probs=82.0

Q ss_pred             CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc-CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHH---
Q 009514          201 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI---  276 (533)
Q Consensus       201 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~---  276 (533)
                      +...|..|++.|++.+...++-...... ..+..++.-| ++.+.+|+..+..+|..+.....+..    .....++   
T Consensus       271 ~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~----l~~~~l~ial  345 (533)
T KOG2032|consen  271 SAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD----LESYLLNIAL  345 (533)
T ss_pred             hhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc----hhhhchhHHH
Confidence            3467889999999998764433222222 2444444444 55578999999999988875532211    2233333   


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCC-chhHHHHHH--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514          277 PLVRLLDDTSTAVQVAALGAISNIVVDF-TTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       277 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~  344 (533)
                      .+-.+..+.+++++.++...++.|+.-. ...+..+.+  .+...+++-.+.++++.+ ..|++.....+.
T Consensus       346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~  415 (533)
T KOG2032|consen  346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY  415 (533)
T ss_pred             HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence            3555677899999999998888776522 233333332  223334444456666653 345555555543

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.27  E-value=9.9  Score=33.57  Aligned_cols=119  Identities=21%  Similarity=0.284  Sum_probs=76.6

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhccC--ChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514          316 GVKLLVQLSKSMDSTIRLNALRALRNLIFLA--EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV  393 (533)
Q Consensus       316 ~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~--~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  393 (533)
                      -++.++++..+++..+|..|+..+.-.....  .|        ...+|.++.|..|+++.++..|...+..+....++.+
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v   80 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--------KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV   80 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence            3566777888899999999999998776432  22        1257889999999999999999999999998876655


Q ss_pred             HHHHhhcC-chHHHHHHHhccCCchhH---HHHHHHHHHHhccCChhhHHHHHH
Q 009514          394 EYIFAEDG-IILDAVGRQLRIASKAEI---EIQGMYVLGNVATGKESHKEAVMD  443 (533)
Q Consensus       394 ~~i~~~~~-~~~~~L~~~L~~~~~~~v---~~~a~~~L~~l~~~~~~~~~~~~~  443 (533)
                      ..-+.+|- ...+.- +.+..+.....   ....+..+..+..++...|..++.
T Consensus        81 ~~~~~~gi~~af~~~-~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~  133 (187)
T PF12830_consen   81 ESRYSEGIRLAFDYQ-RRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK  133 (187)
T ss_pred             HHHHHHHHHHHHHHH-HHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH
Confidence            54444431 011111 22222111111   445555555666555566766663

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.76  E-value=39  Score=40.01  Aligned_cols=107  Identities=20%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHH
Q 009514          278 LVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFM  356 (533)
Q Consensus       278 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~  356 (533)
                      ++..+..+++..+..+..+++.++...+..  .++ ++..+.+..-+++ .++..|..-.-+++.+-.+.+.-...+...
T Consensus       881 ~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~  957 (2067)
T KOG1822|consen  881 IVNSLINPNPKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN  957 (2067)
T ss_pred             HhhhhccCChHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence            445556789999999999999998754432  111 2344555544444 455666666677777654332211112121


Q ss_pred             hhcHHHHHhhhCCCC-hhHHHHHHHHHHHhhcC
Q 009514          357 ELTASLLASLICDPE-PSVQEQALALVRNLVDG  388 (533)
Q Consensus       357 ~~~~~~l~~lL~~~~-~~v~~~a~~~L~~l~~~  388 (533)
                       .++..++.+-.|+. +.||++++.++.-+.+.
T Consensus       958 -t~v~illal~~Ds~~p~VqtwSL~al~~i~~s  989 (2067)
T KOG1822|consen  958 -TSVSILLALATDSTSPVVQTWSLHALALILDS  989 (2067)
T ss_pred             -cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC
Confidence             13566777776655 48999998888777655

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.68  E-value=4.3  Score=38.11  Aligned_cols=133  Identities=11%  Similarity=0.182  Sum_probs=84.7

Q ss_pred             HHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHH
Q 009514          360 ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE  439 (533)
Q Consensus       360 ~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  439 (533)
                      +...++.|.+.++......+..++.++.-+++.....+.+   ++-.+++-+.+ +...|-..|+.+++.+...-....+
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~---vii~vvkslKN-lRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE---VIIAVVKSLKN-LRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677888899999999999999987776655555443   33444455555 6778889999999988864433444


Q ss_pred             HHHHHhhHhhhhhhHHHHHHhhcc---CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHH
Q 009514          440 AVMDQLLLRAENKAQSCIIKFLQS---NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKL  516 (533)
Q Consensus       440 ~~~~~~~~~~~~~~~~~lv~~L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~  516 (533)
                      ..++           ..+..+|..   ++.-+|+.|-.+|..+..+   .++..        +++.|+..+...++.++.
T Consensus       166 ~~ld-----------~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~---vtp~~--------~L~~L~~~~~~~n~r~r~  223 (334)
T KOG2933|consen  166 QELD-----------DLVTQLLHKASQDNRFVREDAEKALVAMVNH---VTPQK--------LLRKLIPILQHSNPRVRA  223 (334)
T ss_pred             HHHH-----------HHHHHHHhhhcccchHHHHHHHHHHHHHHhc---cChHH--------HHHHHHHHHhhhchhhhh
Confidence            3322           334445543   3455899999999988853   33222        234455555555555554


Q ss_pred             HH
Q 009514          517 RV  518 (533)
Q Consensus       517 ~a  518 (533)
                      .+
T Consensus       224 ~a  225 (334)
T KOG2933|consen  224 KA  225 (334)
T ss_pred             hh
Confidence            43

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=90.67  E-value=25  Score=37.18  Aligned_cols=234  Identities=18%  Similarity=0.153  Sum_probs=132.7

Q ss_pred             hhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhh
Q 009514          116 ARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL  195 (533)
Q Consensus       116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L  195 (533)
                      +.-+..=.+.|..+...-+    ..+..+.++|.|+..+.+..-+ -...-.+..++...+   +..+....+|.|...+
T Consensus       287 n~qKs~Flk~Ls~~ip~fp----~rv~~~kiLP~L~~el~n~~~v-p~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~  358 (700)
T KOG2137|consen  287 NSQKSSFLKGLSKLIPTFP----ARVLFQKILPTLVAELVNTKMV-PIVLPLVLLIAEGLS---QNEFGPKMLPALKPIY  358 (700)
T ss_pred             cHHHHHHHHHHHHhhccCC----HHHHHHhhhhHHHHHhcccccc-ccccchhhhhhhccc---hhhhhhhhhHHHHHHh
Confidence            3333333444554444332    3356678888888877532111 111111111221111   1122334467777766


Q ss_pred             hcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcH
Q 009514          196 QKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV  275 (533)
Q Consensus       196 ~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i  275 (533)
                      ... .+.   +.-+..+-++-.-.+.....-+...++|.|...+++.+..+|..+...+..++...+.   . ++...++
T Consensus       359 ~~~-~~~---~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~-~vk~~il  430 (700)
T KOG2137|consen  359 SAS-DPK---QALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---P-FVKQAIL  430 (700)
T ss_pred             ccC-Ccc---cchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---H-HHHHHHH
Confidence            542 222   2222233322110112223345567899999999999999999999999999876442   1 4666778


Q ss_pred             HHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHH
Q 009514          276 IPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI  354 (533)
Q Consensus       276 ~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i  354 (533)
                      |.|-.+. .+++..++..++-|+..++..    .....-...+.++.+-.+..++.+....+.+..++.....  ....+
T Consensus       431 P~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~--~g~ev  504 (700)
T KOG2137|consen  431 PRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY--SGVEV  504 (700)
T ss_pred             HHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc--cceee
Confidence            8887764 477899999999999998831    1111112345555566667888888888887777754221  11345


Q ss_pred             HHhhcHHHHHhhhCCCC
Q 009514          355 FMELTASLLASLICDPE  371 (533)
Q Consensus       355 ~~~~~~~~l~~lL~~~~  371 (533)
                      ..+..++.++.+...+.
T Consensus       505 ~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  505 MAENVLPLLIPLSVAPS  521 (700)
T ss_pred             ehhhhhhhhhhhhhccc
Confidence            55666777776665443

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=90.44  E-value=4.3  Score=35.00  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=76.4

Q ss_pred             cHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc---CCh
Q 009514          359 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT---GKE  435 (533)
Q Consensus       359 ~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~---~~~  435 (533)
                      ...++..+|.+++++-+..++..+.-.+..++  .+.+.++++..+..+.+.|+....+.+++.++.++..+..   +.+
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            35678889999999999888888888876642  2344466666888899999885567788888888877764   444


Q ss_pred             hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          436 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      .....+....    -..+++.+++++++  ......+..+|..+..
T Consensus       104 ~l~Rei~tp~----l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  104 TLTREIATPN----LPKFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             chHHHHhhcc----HHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence            3222222211    13455666666654  4566677777776664

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=90.36  E-value=6.9  Score=41.59  Aligned_cols=163  Identities=17%  Similarity=0.210  Sum_probs=92.9

Q ss_pred             cHHHHHHhhcCC----CHHHHHHHHHHHHHhhccC---ChHhHHHHHHhhcHHHHHhhh----CCCChhHHHHHHHHHHH
Q 009514          316 GVKLLVQLSKSM----DSTIRLNALRALRNLIFLA---EDKCKEEIFMELTASLLASLI----CDPEPSVQEQALALVRN  384 (533)
Q Consensus       316 ~i~~L~~ll~~~----~~~~~~~al~aL~~l~~~~---~~~~~~~i~~~~~~~~l~~lL----~~~~~~v~~~a~~~L~~  384 (533)
                      .+..+..+++++    ++.++..++-+++++....   .+.+...+.+ ..++.+.+.|    +..+.+.+...+.+|+|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE-ELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            456666777653    4668888888888876421   1111111111 1234444433    34556666777888888


Q ss_pred             hhcCCcchHHHHHhhcCchHHHHHHHhcc--CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514          385 LVDGRINSVEYIFAEDGIILDAVGRQLRI--ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  462 (533)
Q Consensus       385 l~~~~~~~~~~i~~~~~~~~~~L~~~L~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~  462 (533)
                      +....             .+..+...+..  ..+..++..|+++|..++...+....               +.+..++.
T Consensus       473 ~g~~~-------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~---------------~~l~~i~~  524 (574)
T smart00638      473 AGHPS-------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ---------------EVLLPIYL  524 (574)
T ss_pred             cCChh-------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH---------------HHHHHHHc
Confidence            76542             34455555542  13567999999999988754442221               34555555


Q ss_pred             c--CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhh-cCCCCcHHHHHHHH
Q 009514          463 S--NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-NDPCLDVKLRVKTA  521 (533)
Q Consensus       463 ~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~~~~~~v~~~a~~a  521 (533)
                      +  .++++|.+|...|...-.     +.         ..+..+...+ .+++..|...+...
T Consensus       525 n~~e~~EvRiaA~~~lm~t~P-----~~---------~~l~~ia~~l~~E~~~QV~sfv~S~  572 (574)
T smart00638      525 NRAEPPEVRMAAVLVLMETKP-----SV---------ALLQRIAELLNKEPNLQVASFVYSH  572 (574)
T ss_pred             CCCCChHHHHHHHHHHHhcCC-----CH---------HHHHHHHHHHhhcCcHHHHHHhHHh
Confidence            4  467899999988876542     11         1234555555 34555565554443

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=90.28  E-value=1.6  Score=38.60  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=72.7

Q ss_pred             CCCHHHHHHHHHHHHHHhhccccccchh---------------hhhcCcHHHHHHhhcC------CCHHHHHHHHHHHHH
Q 009514          241 HDSSDVRSAACMCLRSVSRSIKNLSAGS---------------FMNETIVIPLVRLLDD------TSTAVQVAALGAISN  299 (533)
Q Consensus       241 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~---------------~~~~~~i~~Lv~lL~~------~~~~v~~~a~~aL~n  299 (533)
                      +++...-..++..|.|+++..+. +..-               ......+..|+.++..      ...+-....+..+.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            44445556677888888776322 2110               0123456777776643      234556788899999


Q ss_pred             HhcCCchhHHHHHHh--Cc--HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH
Q 009514          300 IVVDFTTRRSTFIRL--GG--VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM  356 (533)
Q Consensus       300 l~~~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~  356 (533)
                      ++. .+..++.+.+.  +.  +..|+.++.+.+..-|..++.++.|+|...+  ....++.
T Consensus        85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~--~H~~LL~  142 (192)
T PF04063_consen   85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTD--SHEWLLS  142 (192)
T ss_pred             hcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHh--HHHHhcC
Confidence            996 56777777753  33  7788888888876667789999999997543  4455544

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=90.21  E-value=3.8  Score=36.08  Aligned_cols=80  Identities=16%  Similarity=0.088  Sum_probs=57.0

Q ss_pred             HHHHHHcCcHHHHHHhhhcCC-------CCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHH
Q 009514          179 QKLAFEVNGVDKLYNHLQKGS-------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAAC  251 (533)
Q Consensus       179 ~~~~~~~~~l~~L~~~L~~~~-------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~  251 (533)
                      -+.+++.||+..|+++|..-.       .+......++.++..+..........+...+.+..+...|.+++..+|..++
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l  179 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL  179 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence            355678899988888776431       1234667789999998865433333344568999999999999999999999


Q ss_pred             HHHHHHh
Q 009514          252 MCLRSVS  258 (533)
Q Consensus       252 ~~L~~ls  258 (533)
                      ..|..++
T Consensus       180 eiL~~lc  186 (187)
T PF06371_consen  180 EILAALC  186 (187)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=90.18  E-value=15  Score=33.80  Aligned_cols=202  Identities=13%  Similarity=0.109  Sum_probs=115.5

Q ss_pred             HHHHH-hcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514          233 KLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF  311 (533)
Q Consensus       233 ~~l~~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  311 (533)
                      +.++. .-+..++.++.....+|..++.+.. .     ...-++..|..+...++.+.+..+...+..+....+...   
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~-----~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKN-V-----CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCc-c-----chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            34444 4456789999999999999987731 1     123456677777788888887778888877775433221   


Q ss_pred             HHhCcHHHHHHh-----h---cCC--CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh-CCCChhHHHHHHH
Q 009514          312 IRLGGVKLLVQL-----S---KSM--DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALA  380 (533)
Q Consensus       312 ~~~~~i~~L~~l-----l---~~~--~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL-~~~~~~v~~~a~~  380 (533)
                         +.+..++..     .   .+.  ..+.......++..+|...+ +     ...-.++.+..++ .+.++.++..++.
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p-~-----~g~~ll~~ls~~L~~~~~~~~~alale  144 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRP-D-----HGVDLLPLLSGCLNQSCDEVAQALALE  144 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhCh-h-----hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence               223333322     1   111  12223333345566655332 2     1112356667777 7888899999999


Q ss_pred             HHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHH-HHHHHhhHhhhhhhHHHHHH
Q 009514          381 LVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE-AVMDQLLLRAENKAQSCIIK  459 (533)
Q Consensus       381 ~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~lv~  459 (533)
                      +|+.++..+   +-.+..    .+..+.+.|.....+.+....+..+..+..+.-+..+ ..+.       .+++..+-+
T Consensus       145 ~l~~Lc~~~---vvd~~s----~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~-------~~~l~~lW~  210 (234)
T PF12530_consen  145 ALAPLCEAE---VVDFYS----AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELK-------RQILQLLWE  210 (234)
T ss_pred             HHHHHHHHh---hccHHH----HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHH-------HHHHHHHHh
Confidence            999999542   222222    5566777776545677776555555544443322111 1111       455566666


Q ss_pred             hhccCCh
Q 009514          460 FLQSNDS  466 (533)
Q Consensus       460 ~L~~~~~  466 (533)
                      +..+.+.
T Consensus       211 ~~~~~~~  217 (234)
T PF12530_consen  211 YTSSSDV  217 (234)
T ss_pred             hcccccc
Confidence            6665553

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=90.09  E-value=15  Score=33.75  Aligned_cols=195  Identities=13%  Similarity=0.052  Sum_probs=110.5

Q ss_pred             HHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcH
Q 009514          110 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGV  188 (533)
Q Consensus       110 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l  188 (533)
                      +.+..+++.+....++|..++.++.      ....-++..|..+.+.+ ...+.-+.+.+..+-..++...      +.+
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~------~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L   76 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN------VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFL   76 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc------cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHH
Confidence            5567788999999999999888651      11223455555555533 3334456667777765554321      223


Q ss_pred             HHHHHh--h------hcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc-CCCCHHHHHHHHHHHHHHhh
Q 009514          189 DKLYNH--L------QKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSR  259 (533)
Q Consensus       189 ~~L~~~--L------~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls~  259 (533)
                      ..++..  +      .+.+...+..-....++..+|...++     .....++.+..+| ++.++.++..+..+|..++.
T Consensus        77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~  151 (234)
T PF12530_consen   77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE  151 (234)
T ss_pred             HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            333332  1      11112233334445577777766554     2334788999999 78888999999999999885


Q ss_pred             ccccccchhhhh-cCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCch-hHHHHHHhCcHHHHHHhhcCCC
Q 009514          260 SIKNLSAGSFMN-ETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT-RRSTFIRLGGVKLLVQLSKSMD  328 (533)
Q Consensus       260 ~~~~~~~~~~~~-~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~-~~~~~~~~~~i~~L~~ll~~~~  328 (533)
                      . +      +++ ......+.+-++ +..+.+...-+.-+..+....-+ .........++..+.++....+
T Consensus       152 ~-~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  152 A-E------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             H-h------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            4 1      111 223334444443 44666766655555544432222 1223344566677777766654

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=89.98  E-value=34  Score=37.54  Aligned_cols=239  Identities=10%  Similarity=0.123  Sum_probs=134.9

Q ss_pred             hhhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc----CCC----HHHHHHH
Q 009514          269 FMNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK----SMD----STIRLNA  335 (533)
Q Consensus       269 ~~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~~~~~a  335 (533)
                      +.+.|++..++.++.+     .+.+.....+..|...+. ...+++.+++.|+++.|++.+.    .+.    ..+-+.-
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            3456888888888863     345666666777766664 5678889999999999998764    333    4566666


Q ss_pred             HHHHHHhhccCChHhHH---HHH--------HhhcHHHHHhhhCC----CChhHHHHHHHHHHHhhcCCcchHHHHHhhc
Q 009514          336 LRALRNLIFLAEDKCKE---EIF--------MELTASLLASLICD----PEPSVQEQALALVRNLVDGRINSVEYIFAED  400 (533)
Q Consensus       336 l~aL~~l~~~~~~~~~~---~i~--------~~~~~~~l~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  400 (533)
                      +..+..+..........   ...        ....+..+++.+.+    .++.+....+++|-+++.++++..+.+++. 
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-  270 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-  270 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence            66666654422211000   000        11124555555554    368899999999999999987755554442 


Q ss_pred             CchHHHHHHHhc-----c--CCchhHHHHHHHHH-HHhccCC--hhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh----
Q 009514          401 GIILDAVGRQLR-----I--ASKAEIEIQGMYVL-GNVATGK--ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS----  466 (533)
Q Consensus       401 ~~~~~~L~~~L~-----~--~~~~~v~~~a~~~L-~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~----  466 (533)
                            +...+.     .  .++..+...++.-+ .++-...  ...++.+++       .|++...+++|...-+    
T Consensus       271 ------F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-------~GIv~~a~~YL~~~~P~~~~  337 (802)
T PF13764_consen  271 ------FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-------SGIVQDAIDYLLKHFPSLKN  337 (802)
T ss_pred             ------HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-------hhHHHHHHHHHHHhCccccc
Confidence                  222221     1  12223333333322 2222211  235566665       7899888888764222    


Q ss_pred             ----h--------HHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcC-CCCcHHHHHHHHHHHHhh
Q 009514          467 ----R--------LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND-PCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       467 ----~--------v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~-~~~~v~~~a~~aL~~~~~  527 (533)
                          +        ....+...|.-++.    +-. ..+.+...+.++.+-+|-.- ++..+-..|-..|..+.+
T Consensus       338 ~~s~eWk~~l~~psLp~iL~lL~GLa~----gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  338 TDSPEWKEFLSRPSLPYILRLLRGLAR----GHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             CCCHHHHHHhcCCcHHHHHHHHHHHHh----cCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence                1        12345666666764    212 22334556677777666543 345555555555555443

>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B

Probab=89.87  E-value=48  Score=39.17  Aligned_cols=340  Identities=15%  Similarity=0.156  Sum_probs=160.0

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHH---HHH
Q 009514          105 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDM---QKL  181 (533)
Q Consensus       105 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~---~~~  181 (533)
                      ..+++++.--+..+|......|-.+..+.        -...++..|.+++.+++.+......+|++|--+.+..   +..
T Consensus       195 ~kl~~~l~~ap~~lq~eiI~~LPeIl~ds--------~h~~v~~~L~~ll~~~~~L~~~iLd~Ls~L~Ls~~~l~~vr~~  266 (1426)
T PF14631_consen  195 DKLFEVLSIAPVELQKEIISSLPEILDDS--------QHDEVVEELLELLQENPELTVPILDALSNLNLSPELLEEVREK  266 (1426)
T ss_dssp             HHHHHHHHHS-TTTHHHHHHTHHHHS-GG--------GHHHHHHHHHHHHHH-STTHHHHHHHHHHS---HHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhcch--------hHHHHHHHHHHHHhcCCchhhhHHHHHhcCCCCHHHHHHHHHH
Confidence            33444554444455555555555555432        1235777888888877777777888999886554432   222


Q ss_pred             HHH------cCcHHHHHHhhhcCCCCchhHHHHHHHHHH-hh-----------ccchhhhHhh----------hhhchHH
Q 009514          182 AFE------VNGVDKLYNHLQKGSLHPRRFEGILLALAD-MC-----------SKLECCRSRC----------LSLQVLK  233 (533)
Q Consensus       182 ~~~------~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~-l~-----------~~~~~~~~~~----------~~~~~l~  233 (533)
                      +.+      .+.+|.++++|.......+. ...+.-|.. |-           ......+..-          ...+...
T Consensus       267 vl~~L~s~~~e~LP~lirFLL~s~t~~da-~evI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~  345 (1426)
T PF14631_consen  267 VLEKLSSVDLEDLPVLIRFLLQSITPSDA-VEVISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDCEK  345 (1426)
T ss_dssp             HHHSTTSS-TTHHHHHHHHHHHS-SSTTH-HHHHHHHHHHHH-------------------------------HHHHHHH
T ss_pred             HHHHHhcCChhhhHHHHHHHHHhCCcccH-HHHHHHHHHHccccccccchhhcccccccccCcccccccccccccccHHH
Confidence            322      24489999977654222221 111111111 10           0000000000          0011233


Q ss_pred             HHHHhcCCC---CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514          234 LVVDALAHD---SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRS  309 (533)
Q Consensus       234 ~l~~~L~~~---~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~  309 (533)
                      .+++.++.+   +..+..++.+.+.++...         .+...+..++-++ .+.+..-+..+-..+.+-... +....
T Consensus       346 lil~~lks~lr~~k~l~eawiK~I~~~~~~---------~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~-g~it~  415 (1426)
T PF14631_consen  346 LILDVLKSGLRFSKDLSEAWIKAIESLEDA---------SDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKS-GHITE  415 (1426)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHGGGS---------TT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTT-T-S-H
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHhcCCCc---------cccchHHHHHHHHHHcCCccchHHHHHHHHHHHHh-CcccH
Confidence            455555532   556777777777766432         1234444544433 334444556666666665532 12221


Q ss_pred             HHH----------HhCcHHHHHH----hhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHH
Q 009514          310 TFI----------RLGGVKLLVQ----LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ  375 (533)
Q Consensus       310 ~~~----------~~~~i~~L~~----ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~  375 (533)
                      .++          -.+..+.++.    ++.++++.++..+......+....+..+++.++     ..|+.++.+++..-.
T Consensus       416 ~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv-----~~Lvthi~sg~~~ev  490 (1426)
T PF14631_consen  416 QLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVV-----GALVTHIGSGNSQEV  490 (1426)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHH-----HHHHHHHHH--HHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHH-----HHHHHHHcCCcHHHH
Confidence            111          1244555554    467788999999888888877655544555544     455666655555555


Q ss_pred             HHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHH
Q 009514          376 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQS  455 (533)
Q Consensus       376 ~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  455 (533)
                      ..|+.+|..++..+++..   ..... .+.-+...+.+-..++++. ...+|+.++.+.......+-        .++.-
T Consensus       491 ~~aL~vL~~L~~~~~~~l---~~fa~-~l~giLD~l~~Ls~~qiR~-lf~il~~La~~~~~~~s~i~--------del~i  557 (1426)
T PF14631_consen  491 DAALDVLCELAEKNPSEL---QPFAT-FLKGILDYLDNLSLQQIRK-LFDILCTLAFSDSSSSSSIQ--------DELHI  557 (1426)
T ss_dssp             HHHHHHHHHHHHH-HHHH---HHTHH-HHHGGGGGGGG--HHHHHH-HHHHHHHHHHHHSS---HHH--------HHHHH
T ss_pred             HHHHHHHHHHHhccHHHH---HHHHH-HHHHHHHHHhcCCHHHHHH-HHHHHHHHhcCCcccchhhH--------HHHHH
Confidence            788999999987654422   22110 1222222333322334443 35556655542211111121        23333


Q ss_pred             HHHHhhccCChhHHHH----HHHHHHhhcC
Q 009514          456 CIIKFLQSNDSRLRTA----AVWAVLNLTC  481 (533)
Q Consensus       456 ~lv~~L~~~~~~v~~~----a~~~L~~l~~  481 (533)
                      .+-+.|.+++...+..    |+..+..++.
T Consensus       558 vIRKQLss~~~~~K~~GIIGav~~i~~la~  587 (1426)
T PF14631_consen  558 VIRKQLSSSNPKYKRIGIIGAVMMIKHLAA  587 (1426)
T ss_dssp             HHHHHHT-SSHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHhhcCCcHHHHHHhHHHHHHHHHHHHH
Confidence            5556777777765543    4444444443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=89.78  E-value=34  Score=37.23  Aligned_cols=152  Identities=18%  Similarity=0.188  Sum_probs=83.2

Q ss_pred             HHHHHHhCcHHHHHHhhcCC--------CHHHHHHHHHHHHHhhccCChHhHHHHHHhh--------cHHHHHhhhC---
Q 009514          308 RSTFIRLGGVKLLVQLSKSM--------DSTIRLNALRALRNLIFLAEDKCKEEIFMEL--------TASLLASLIC---  368 (533)
Q Consensus       308 ~~~~~~~~~i~~L~~ll~~~--------~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~--------~~~~l~~lL~---  368 (533)
                      .+.+...+++..++++..-+        ..++...|+.+|+-++.  -|+.+..+.+..        |+..++..-.   
T Consensus       594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~--iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~  671 (1516)
T KOG1832|consen  594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS--IPDIQKALAHATLSNNRAYDGIAIILDAANGSN  671 (1516)
T ss_pred             HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe--cchHHHHHHHHHhhcccccCceEEEeecccccc
Confidence            34566778888888876532        34567778877776543  355666655532        2222332221   


Q ss_pred             C-CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHH---HHHHHHhccCChhhHHHHHHH
Q 009514          369 D-PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG---MYVLGNVATGKESHKEAVMDQ  444 (533)
Q Consensus       369 ~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a---~~~L~~l~~~~~~~~~~~~~~  444 (533)
                      + -|++++..|+.++.|+.+..|......+.          +..+++.++.+...+   ...|.+..   ......+-  
T Consensus       672 ~i~Dpei~~~AL~vIincVc~pp~~r~s~i~----------~v~S~~g~~r~~l~~~~ks~~le~~l---~~mw~~Vr--  736 (1516)
T KOG1832|consen  672 SIVDPEIIQPALNVIINCVCPPPTTRPSTIV----------AVGSQSGDRRIFLGAGTKSAKLEQVL---RQMWEAVR--  736 (1516)
T ss_pred             cccCHHHHHHHHhhhheeecCCCCcchhhhh----------hccccCCCccccccCCCchHHHHHHH---HHHHHHHh--
Confidence            1 27899999999999999887643222211          111111111111000   00111110   00111222  


Q ss_pred             hhHhhhhhhHHHHHHhhccCC-----hhHHHHHHHHHHhhcC
Q 009514          445 LLLRAENKAQSCIIKFLQSND-----SRLRTAAVWAVLNLTC  481 (533)
Q Consensus       445 ~~~~~~~~~~~~lv~~L~~~~-----~~v~~~a~~~L~~l~~  481 (533)
                           ..+++..|+++|+..+     ..+|.-||.+|..|+.
T Consensus       737 -----~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR  773 (1516)
T KOG1832|consen  737 -----GNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR  773 (1516)
T ss_pred             -----cCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc
Confidence                 2456688999988532     3599999999999995

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=89.77  E-value=6.8  Score=32.61  Aligned_cols=95  Identities=7%  Similarity=0.111  Sum_probs=63.0

Q ss_pred             CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhH
Q 009514          368 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL  447 (533)
Q Consensus       368 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  447 (533)
                      .++|+......+..+..=    +....       .++..+.+.|.+ +++.++..|+.+|-.+...+......-+.    
T Consensus        15 ~~~dw~~ileicD~In~~----~~~~k-------~a~rai~krl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~eva----   78 (139)
T cd03567          15 REEDWEAIQAFCEQINKE----PEGPQ-------LAVRLLAHKIQS-PQEKEALQALTVLEACMKNCGERFHSEVG----   78 (139)
T ss_pred             CCCCHHHHHHHHHHHHcC----CccHH-------HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHH----
Confidence            355666666666555321    11111       166778888887 88999999999998888754333433333    


Q ss_pred             hhhhhhHHHHHHhhcc------CChhHHHHHHHHHHhhc
Q 009514          448 RAENKAQSCIIKFLQS------NDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       448 ~~~~~~~~~lv~~L~~------~~~~v~~~a~~~L~~l~  480 (533)
                        ..+++..+++++..      .+..|+......+..-+
T Consensus        79 --s~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (139)
T cd03567          79 --KFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT  115 (139)
T ss_pred             --hHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence              26788889998853      46789999888886655

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=89.48  E-value=1.7  Score=45.47  Aligned_cols=137  Identities=14%  Similarity=0.093  Sum_probs=97.7

Q ss_pred             CcccccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc--CChHHHHHHHHHHHHHhcC
Q 009514           10 KYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG--GSLIQRDASLESIATIFKN   87 (533)
Q Consensus        10 ~~~l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~v~~~al~aL~~l~~~   87 (533)
                      +++-+.+..+|.|..-+++.+..+|+.+..++...++.-+  ...++.-.+|.|-.+..  .+..++..++.|++.+.+.
T Consensus       382 ~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~  459 (700)
T KOG2137|consen  382 PPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR  459 (700)
T ss_pred             ChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence            4556667889999999999999999999999999986544  34556667777777643  2568999999999998832


Q ss_pred             ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC
Q 009514           88 NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP  157 (533)
Q Consensus        88 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~  157 (533)
                       -+.. .+     .+.+..+.+..+..++.+...-.+....+.......  ..+....++|.++.+...+
T Consensus       460 -lD~~-~v-----~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g--~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  460 -LDKA-AV-----LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG--VEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             -HHHH-Hh-----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc--eeeehhhhhhhhhhhhhcc
Confidence             2221 11     345677777888888988777776666665543221  2356678999998887654

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=89.32  E-value=1.5  Score=31.80  Aligned_cols=58  Identities=21%  Similarity=0.342  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc-CCCCcHHHHHHHHHHHHhhhccc
Q 009514          469 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-DPCLDVKLRVKTALEQFNSFDDS  531 (533)
Q Consensus       469 ~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-~~~~~v~~~a~~aL~~~~~~~~~  531 (533)
                      .+.|.|++++++.     ++.....+.+.++++.++++.+ ++...+|--+..+|.-+++..++
T Consensus         4 lKaaLWaighIgs-----s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G   62 (73)
T PF14668_consen    4 LKAALWAIGHIGS-----SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG   62 (73)
T ss_pred             HHHHHHHHHhHhc-----ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH
Confidence            4789999999994     4456677778899999999984 67889999999999988776543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=89.09  E-value=1.6  Score=38.57  Aligned_cols=82  Identities=17%  Similarity=0.223  Sum_probs=60.5

Q ss_pred             chhhhHhhhhhchHHHHHHhcCC---------CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHH
Q 009514          219 LECCRSRCLSLQVLKLVVDALAH---------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV  289 (533)
Q Consensus       219 ~~~~~~~~~~~~~l~~l~~~L~~---------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v  289 (533)
                      +..+.+.+++.||+..|+++|..         .+......+..||..+..+....... +...+++..|+..|.+++..+
T Consensus        96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v-~~~~~~v~~i~~~L~s~~~~~  174 (187)
T PF06371_consen   96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAV-LSHPDSVNLIALSLDSPNIKT  174 (187)
T ss_dssp             -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHH-HCSSSHHHHHHHT--TTSHHH
T ss_pred             CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHH-HcCcHHHHHHHHHHCCCCHHH
Confidence            34667788889999999998852         34578888999999887653322222 456788999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 009514          290 QVAALGAISNIV  301 (533)
Q Consensus       290 ~~~a~~aL~nl~  301 (533)
                      +..++..|..++
T Consensus       175 r~~~leiL~~lc  186 (187)
T PF06371_consen  175 RKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=88.81  E-value=28  Score=35.08  Aligned_cols=235  Identities=14%  Similarity=0.101  Sum_probs=132.1

Q ss_pred             hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCC
Q 009514          269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAE  347 (533)
Q Consensus       269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~  347 (533)
                      ..+..++..|+.+++++|++-|......|.++-..+...+..+. ......+.+++... ........++.++.+..+-.
T Consensus       129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~  207 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERHNGIAELLEILGSIINGFA  207 (409)
T ss_dssp             TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred             HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence            56778899999999999999999999999998776666665544 45667777777654 34456677888888876533


Q ss_pred             hHhHHHHHHhhcHHHHHhhhCCCChhH-HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHH
Q 009514          348 DKCKEEIFMELTASLLASLICDPEPSV-QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV  426 (533)
Q Consensus       348 ~~~~~~i~~~~~~~~l~~lL~~~~~~v-~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~  426 (533)
                      ...++... ......++.|.+.+.... ..+-..++......++.....       ++..+.+..-. .++.=..--+.-
T Consensus       208 ~plk~eh~-~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-------~i~~llk~WP~-t~s~Kev~FL~e  278 (409)
T PF01603_consen  208 VPLKEEHK-QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-------VIKGLLKHWPK-TNSQKEVLFLNE  278 (409)
T ss_dssp             SS--HHHH-HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-------HHHHHHHHS-S-S-HHHHHHHHHH
T ss_pred             CCCcHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-------HHHHHHHhCCC-CCchhHHHHHHH
Confidence            11222211 122455666666554322 334444444444444443222       22233232211 222222223334


Q ss_pred             HHHhccC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCC---cHHH
Q 009514          427 LGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG---IVSH  502 (533)
Q Consensus       427 L~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g---~~~~  502 (533)
                      +..+... .+.....+.        ..+...+...++|++..|-+.|.....|=          +...+....   ++|.
T Consensus       279 l~~il~~~~~~~f~~i~--------~~lf~~la~ci~S~h~qVAErAl~~w~n~----------~~~~li~~~~~~i~p~  340 (409)
T PF01603_consen  279 LEEILEVLPPEEFQKIM--------VPLFKRLAKCISSPHFQVAERALYFWNNE----------YFLSLISQNSRVILPI  340 (409)
T ss_dssp             HHHHHTT--HHHHHHHH--------HHHHHHHHHHHTSSSHHHHHHHHGGGGSH----------HHHHHHHCTHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHCCH----------HHHHHHHhChHHHHHH
Confidence            4444442 223333443        35668888999999999998887544321          222222222   3444


Q ss_pred             HHhhh----cC-CCCcHHHHHHHHHHHHhhhccc
Q 009514          503 VKNMV----ND-PCLDVKLRVKTALEQFNSFDDS  531 (533)
Q Consensus       503 L~~ll----~~-~~~~v~~~a~~aL~~~~~~~~~  531 (533)
                      +..-+    +. =+..++..|..++.-+.+...+
T Consensus       341 i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~  374 (409)
T PF01603_consen  341 IFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPK  374 (409)
T ss_dssp             HHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHH
Confidence            44443    22 2778999999999888776543

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.80  E-value=2.8  Score=43.59  Aligned_cols=129  Identities=13%  Similarity=0.166  Sum_probs=91.9

Q ss_pred             CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhh
Q 009514          370 PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA  449 (533)
Q Consensus       370 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~  449 (533)
                      +|+.+|..|--.|..+.+-+.   +...+    -++.+...+..+++|.++.++.-.++.++.......+.         
T Consensus       908 sd~~lq~aA~l~L~klMClS~---~fc~e----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de---------  971 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSF---EFCSE----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE---------  971 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhH---HHHHH----HHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH---------
Confidence            678888888777777655422   12222    36788888887799999999999998888643322222         


Q ss_pred             hhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          450 ENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       450 ~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                         .-.-|.+-|.+.+..||..|..++..+.-.   |      .+--.|-++.+..+|+|++.+..+-|..-+..++
T Consensus       972 ---~t~yLyrrL~De~~~V~rtclmti~fLila---g------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098         972 ---HTHYLYRRLGDEDADVRRTCLMTIHFLILA---G------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred             ---HHHHHHHHhcchhhHHHHHHHHHHHHHHHc---c------ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence               124677788899999999999999999852   2      2233577788889999888887777766665554

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=87.79  E-value=36  Score=35.06  Aligned_cols=95  Identities=14%  Similarity=0.193  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-----CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhH
Q 009514          373 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL  447 (533)
Q Consensus       373 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  447 (533)
                      +....+-.+++||+......         ..+..|..+|.+     ..+..+..+|.+.+..+..+....+..-+.-   
T Consensus       230 ~l~~~~w~~m~nL~~S~~g~---------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~---  297 (464)
T PF11864_consen  230 SLCKPSWRTMRNLLKSHLGH---------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF---  297 (464)
T ss_pred             ccchhHHHHHHHHHcCccHH---------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc---
Confidence            55666777888888654210         145666666621     1344566788899888887663222222110   


Q ss_pred             hhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          448 RAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       448 ~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                       ...-+++.+...++.++..+-.+....+.++.
T Consensus       298 -~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  298 -SPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             -cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence             01226677888888766655555555555555

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=87.28  E-value=31  Score=33.70  Aligned_cols=160  Identities=18%  Similarity=0.154  Sum_probs=108.3

Q ss_pred             HHHHHhhhCCCChhHHHHHHHHHHHhhc-CCcchHHHHHhhcCchHHHHHHHhccC----Cc--------hhHHHHHHH-
Q 009514          360 ASLLASLICDPEPSVQEQALALVRNLVD-GRINSVEYIFAEDGIILDAVGRQLRIA----SK--------AEIEIQGMY-  425 (533)
Q Consensus       360 ~~~l~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~~~~~~~~L~~~L~~~----~~--------~~v~~~a~~-  425 (533)
                      +..+.+.|.+....+...++.+|..+.. +.......+++.-+.-.+.+.+++...    .+        +.+|...+. 
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6777888888888888899999999987 555566666665443345555555321    01        277777666 


Q ss_pred             HHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHh
Q 009514          426 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN  505 (533)
Q Consensus       426 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~  505 (533)
                      .|..+..+++..+..++++      .+.+..+.+.|..+++++-.....++..-...+..-.+.....+.....+..|..
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~------~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~  211 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQ------KKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS  211 (330)
T ss_pred             HHHHHccCCHHHHHHHHHc------CchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence            4555556777778788874      6778888888988778888888888876554333334444555666678899999


Q ss_pred             hhcCCCC----cHHHHHHHHHHHH
Q 009514          506 MVNDPCL----DVKLRVKTALEQF  525 (533)
Q Consensus       506 ll~~~~~----~v~~~a~~aL~~~  525 (533)
                      +-....+    .+.+.|-.-|..+
T Consensus       212 Ly~~~~~~~~~~~~~~vh~fL~~l  235 (330)
T PF11707_consen  212 LYSRDGEDEKSSVADLVHEFLLAL  235 (330)
T ss_pred             HhcccCCcccchHHHHHHHHHHHH
Confidence            8776566    5666555555444

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=86.96  E-value=16  Score=34.45  Aligned_cols=159  Identities=19%  Similarity=0.155  Sum_probs=88.4

Q ss_pred             hHHHHHHhcC-CCCchhhhHHHHHHhhhcCCHHHHHHHHHcC-c-HHHHHHhhhcCC--CCchhHHHHHHHHHHhhccch
Q 009514          146 LINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVN-G-VDKLYNHLQKGS--LHPRRFEGILLALADMCSKLE  220 (533)
Q Consensus       146 ~i~~L~~ll~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~-l~~L~~~L~~~~--~~~~~~~~a~~aL~~l~~~~~  220 (533)
                      ....+.+++. .+.+-+.-+...+.-++. ++.........+ + ...+..++....  .++..+.-+++++.|+..+ +
T Consensus        64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~  141 (268)
T PF08324_consen   64 WLILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-P  141 (268)
T ss_dssp             HHHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-C
T ss_pred             HHHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-C
Confidence            3445555554 344455666666654443 333222222222 1 344444443332  3466788899999998765 4


Q ss_pred             hhhHhhhhh-c--hHHHHHHhcCCC---CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh-c-CCCHHHHHH
Q 009514          221 CCRSRCLSL-Q--VLKLVVDALAHD---SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-D-DTSTAVQVA  292 (533)
Q Consensus       221 ~~~~~~~~~-~--~l~~l~~~L~~~---~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~-~~~~~v~~~  292 (533)
                      ..+..+... +  ++..+.......   +..+|.+++.++.|++......+...-.....+..+++.+ . ..|+|+...
T Consensus       142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred             ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            555555543 2  233333333333   7899999999999997542221100001223456666633 3 369999999


Q ss_pred             HHHHHHHHhcCCch
Q 009514          293 ALGAISNIVVDFTT  306 (533)
Q Consensus       293 a~~aL~nl~~~~~~  306 (533)
                      ++-|++++......
T Consensus       222 ~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  222 LLVALGTLLSSSDS  235 (268)
T ss_dssp             HHHHHHHHHCCSHH
T ss_pred             HHHHHHHHhccChh
Confidence            99999999965433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=85.43  E-value=39  Score=33.11  Aligned_cols=198  Identities=19%  Similarity=0.142  Sum_probs=98.8

Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccch
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG  267 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~  267 (533)
                      +..+..++..+ .++......+.++..-...-    ..-....++..+.+-+++..+.+|..+..+++...+...+....
T Consensus        24 ~~~l~~~~~KE-~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~   98 (339)
T PF12074_consen   24 VQGLSPLLSKE-SNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL   98 (339)
T ss_pred             HHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence            34455555554 24444455555554332211    12234457888888999988889999999999887611111111


Q ss_pred             hhhhcCcHHHHHHhhc----CCCHHHH---HHHHHHHHHHhcC-CchhHH-HHH----HhCcHHH-HH--HhhcC-CCHH
Q 009514          268 SFMNETIVIPLVRLLD----DTSTAVQ---VAALGAISNIVVD-FTTRRS-TFI----RLGGVKL-LV--QLSKS-MDST  330 (533)
Q Consensus       268 ~~~~~~~i~~Lv~lL~----~~~~~v~---~~a~~aL~nl~~~-~~~~~~-~~~----~~~~i~~-L~--~ll~~-~~~~  330 (533)
                       -.-..++|.|++.++    ++-+..+   ..++.++..+... ...... ...    -.+-=+. +.  ++... .+++
T Consensus        99 -~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~  177 (339)
T PF12074_consen   99 -KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEE  177 (339)
T ss_pred             -HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHh
Confidence             133467888888884    3322211   1222222211110 000000 000    0000000 00  11111 2233


Q ss_pred             HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCC--ChhHHHHHHHHHHHhhcCCcch
Q 009514          331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP--EPSVQEQALALVRNLVDGRINS  392 (533)
Q Consensus       331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~  392 (533)
                      -..-.++++..+..+......... .....+.++.++.++  .+++|..|..++..+...++..
T Consensus       178 d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~  240 (339)
T PF12074_consen  178 DLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL  240 (339)
T ss_pred             HHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence            344455556555443322222222 223345677777777  8999999999999999887753

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=85.26  E-value=65  Score=35.57  Aligned_cols=124  Identities=17%  Similarity=0.238  Sum_probs=80.3

Q ss_pred             HHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC
Q 009514          164 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS  243 (533)
Q Consensus       164 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~  243 (533)
                      +.-.|++|.-.++...+     ..+|.|++-|..+. ...+|-+.+-+++.+|..-     .+...-.+|.+...|.+++
T Consensus       951 ~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~-~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L~Dp~ 1019 (1529)
T KOG0413|consen  951 GVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNT-AHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASLCDPS 1019 (1529)
T ss_pred             HHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhh-HHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHhcCch
Confidence            33455566544444332     35788888887663 4456777777777777421     2333457999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 009514          244 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVD  303 (533)
Q Consensus       244 ~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~  303 (533)
                      +-||.++.-.|.+|-.. +..++.   ..=++..+..++ +.+++++.-|-..++.+...
T Consensus      1020 ~iVRrqt~ilL~rLLq~-~~vKw~---G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1020 VIVRRQTIILLARLLQF-GIVKWN---GELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred             HHHHHHHHHHHHHHHhh-hhhhcc---hhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence            99999999999888543 222221   111233333333 67889999999888887753

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=85.20  E-value=61  Score=35.22  Aligned_cols=195  Identities=15%  Similarity=0.127  Sum_probs=109.3

Q ss_pred             HHHHHhhccccccchhhhhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcH-HHHHHhhcCCCH-
Q 009514          253 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV-KLLVQLSKSMDS-  329 (533)
Q Consensus       253 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i-~~L~~ll~~~~~-  329 (533)
                      +|+++....+..++. +.+.+++..+...++. ++.+++..+.+.++|++...............- ..+-.++...+. 
T Consensus       494 ~l~~~t~~~~~~C~~-~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKE-FLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHH-HHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            788888877777877 8999999999999973 678899999999999996442221111111111 122233333333 


Q ss_pred             HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHH-HH
Q 009514          330 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA-VG  408 (533)
Q Consensus       330 ~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~-L~  408 (533)
                      +.-..+...|..+...+++ .    .+.               .-+..+...+.......+..........  .+.. +.
T Consensus       573 ersY~~~siLa~ll~~~~~-~----~~~---------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~--~f~~~~~  630 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEK-T----TEC---------------VFRNSVNELLVEAISRWLTSEIRVINDR--SFFPRIL  630 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCc-C----ccc---------------cchHHHHHHHHHHhhccCccceeehhhh--hcchhHH
Confidence            5566777788877664331 0    000               0111111222222111110000111111  2223 55


Q ss_pred             HHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHH
Q 009514          409 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVL  477 (533)
Q Consensus       409 ~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~  477 (533)
                      +++..+..+..+.-|+|++.++....++....+.+       .++++.+.+.-. +...+++..+...+.
T Consensus       631 ~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  631 RILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRE-------SNGFELIENIRVLSEVVDVKEEAVLVIE  693 (699)
T ss_pred             HHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHh-------ccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence            66776677889999999999999887775555554       566665555432 223455555554443

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=84.77  E-value=9.8  Score=31.92  Aligned_cols=71  Identities=10%  Similarity=0.135  Sum_probs=56.5

Q ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHhhc
Q 009514          403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~-~~~~v~~~a~~~L~~l~  480 (533)
                      ++..+.+.|.+ +++.++..|+..|-.+...+......-+.      ..+++..|+.++.. .+..|+......|...+
T Consensus        38 a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~eva------sk~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~  109 (144)
T cd03568          38 CLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEVA------SRDFTQELKKLINDRVHPTVKEKLREVVKQWA  109 (144)
T ss_pred             HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHh------hHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            67788888887 89999999999999888765544443333      27888999999987 67899999998888766

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=84.34  E-value=7.7  Score=32.55  Aligned_cols=95  Identities=17%  Similarity=0.183  Sum_probs=71.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHH
Q 009514          284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL  363 (533)
Q Consensus       284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l  363 (533)
                      .+|+..-...|..+..=  .. ..      ..++..|.+-+.+.++.++..|+..|-.+..+.+...+..+.....++.|
T Consensus        15 ~~dw~~il~icD~I~~~--~~-~~------k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL   85 (144)
T cd03568          15 SENWGLILDVCDKVKSD--EN-GA------KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQEL   85 (144)
T ss_pred             CcCHHHHHHHHHHHhcC--Cc-cH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence            45666666666666421  11 11      24567777777889999999999999999888887788888888888999


Q ss_pred             HhhhCC-CChhHHHHHHHHHHHhhc
Q 009514          364 ASLICD-PEPSVQEQALALVRNLVD  387 (533)
Q Consensus       364 ~~lL~~-~~~~v~~~a~~~L~~l~~  387 (533)
                      .+++.. .+..|+..++.++...+.
T Consensus        86 ~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          86 KKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHhcccCCHHHHHHHHHHHHHHHH
Confidence            999987 788999999988877653

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=84.11  E-value=47  Score=32.97  Aligned_cols=158  Identities=17%  Similarity=0.166  Sum_probs=90.9

Q ss_pred             HHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC------C
Q 009514          297 ISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC------D  369 (533)
Q Consensus       297 L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~------~  369 (533)
                      +-|++.  .+....+.+.+-.+-+-+-+...+ ..-|.+|...+..++...     ..-........+..++.      +
T Consensus       194 ~Pnl~~--~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~-----~~~v~~i~~~~i~~~l~~y~~~~~  266 (370)
T PF08506_consen  194 FPNLCL--REEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKF-----EKQVTSILMQYIQQLLQQYASNPS  266 (370)
T ss_dssp             HHHHS----HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             cCccCC--CHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHhhCCc
Confidence            335542  344456777777777776666544 345778888888886532     12222222233344443      4


Q ss_pred             CChhHHHHHHHHHHHhhcCCcc------------hHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhh
Q 009514          370 PEPSVQEQALALVRNLVDGRIN------------SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH  437 (533)
Q Consensus       370 ~~~~v~~~a~~~L~~l~~~~~~------------~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~  437 (533)
                      .++.-+..|+.++..++.....            .+..++...  +++-|.  -..+..|-++..|++.+..+-..-+  
T Consensus       267 ~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~--v~peL~--~~~~~~piLka~aik~~~~Fr~~l~--  340 (370)
T PF08506_consen  267 NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQH--VLPELQ--PDVNSHPILKADAIKFLYTFRNQLP--  340 (370)
T ss_dssp             T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHH--TCHHHH---SS-S-HHHHHHHHHHHHHHGGGS---
T ss_pred             ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHH--hHHHhc--ccCCCCcchHHHHHHHHHHHHhhCC--
Confidence            5778888899999999855311            122333322  233332  0112456788899998887765432  


Q ss_pred             HHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 009514          438 KEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV  476 (533)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L  476 (533)
                      .+.+         .+++|.++..|++++.-|+..|+.+|
T Consensus       341 ~~~l---------~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  341 KEQL---------LQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHH---------HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHH---------HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            2222         36789999999999999999998775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=83.76  E-value=71  Score=34.77  Aligned_cols=181  Identities=17%  Similarity=0.174  Sum_probs=103.5

Q ss_pred             HHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCCh-h
Q 009514          296 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP-S  373 (533)
Q Consensus       296 aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~-~  373 (533)
                      +|.+.....+...+.+++.|++..+...++. .+.+++..++..+.|++............+.-....+..++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            4557777777777889999999999998885 4577899999999999864321111111221111233334433333 5


Q ss_pred             HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhh
Q 009514          374 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKA  453 (533)
Q Consensus       374 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~  453 (533)
                      .--.+++.|..+....++.....                  ..+++.+--..++..+...   ....+..       .-+
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~------------------~r~~~~~~l~e~i~~~~~~---~~~~~~~-------~~f  625 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECV------------------FRNSVNELLVEAISRWLTS---EIRVIND-------RSF  625 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCcccc------------------chHHHHHHHHHHhhccCcc---ceeehhh-------hhc
Confidence            66667777777665533211100                  1122222222333333321   1222222       112


Q ss_pred             HHHHHHhhc-cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc
Q 009514          454 QSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN  508 (533)
Q Consensus       454 ~~~lv~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~  508 (533)
                      .|.+-.++. +..+....-|.|++.++..    ..++..+...+.|.++.+.++-.
T Consensus       626 ~~~~~~il~~s~~~g~~lWal~ti~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  677 (699)
T KOG3665|consen  626 FPRILRILRLSKSDGSQLWALWTIKNVLE----QNKEYCKLVRESNGFELIENIRV  677 (699)
T ss_pred             chhHHHHhcccCCCchHHHHHHHHHHHHH----cChhhhhhhHhccchhhhhhcch
Confidence            232444454 4456788999999999995    33446677888998888887753

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=83.50  E-value=21  Score=31.97  Aligned_cols=140  Identities=11%  Similarity=0.133  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHh
Q 009514          291 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS  365 (533)
Q Consensus       291 ~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~  365 (533)
                      ..|...|.-++. .++.+..+.++..---+..++..     +.+.+|..++..++.+..+.+++....+.....+|..++
T Consensus       118 cnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         118 CNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            444555555554 44555555554422222344332     336689999999999999988888888888899999999


Q ss_pred             hhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcC------chHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          366 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG------IILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       366 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~------~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                      +++.++.--+.-++.++..+..++. ..+++.+.-.      .++.-++..+-+.+......+++++-..++.
T Consensus       197 Ime~gSElSktvaifI~qkil~dDv-GLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDV-GLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD  268 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence            9999888888888888887776543 3344332110      0223333333333555555666666555553

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=83.06  E-value=14  Score=30.56  Aligned_cols=71  Identities=10%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc---CChhHHHHHHHHHHhh
Q 009514          403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS---NDSRLRTAAVWAVLNL  479 (533)
Q Consensus       403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~---~~~~v~~~a~~~L~~l  479 (533)
                      ++..|.+.|.+ +++.++..|+.+|-.+...+.......+.      ...++..++.++..   .+..|+..+...+...
T Consensus        38 a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i~------s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W  110 (133)
T cd03561          38 AARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQVA------DKEFLLELVKIAKNSPKYDPKVREKALELILAW  110 (133)
T ss_pred             HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHHh------hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence            67788888888 89999999999999888766544444443      25777788888875   4678999998888776


Q ss_pred             c
Q 009514          480 T  480 (533)
Q Consensus       480 ~  480 (533)
                      +
T Consensus       111 ~  111 (133)
T cd03561         111 S  111 (133)
T ss_pred             H
Confidence            6

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=82.06  E-value=63  Score=32.96  Aligned_cols=216  Identities=18%  Similarity=0.142  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHhcCChhhhhhhccccCcccHH-HHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHH
Q 009514           72 IQRDASLESIATIFKNNPEVVSQFVGPDTGRTLS-CIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL  150 (533)
Q Consensus        72 ~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~-~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L  150 (533)
                      +.|..|..+|+.++..-+...       -..... .++..+++...--|..|+..+...+........... -....+.|
T Consensus       102 r~Ri~aA~ALG~l~~~~~~~~-------~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~-~~~l~~~L  173 (441)
T PF12054_consen  102 RARIAAAKALGLLLSYWPESS-------LQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPP-PQALSPRL  173 (441)
T ss_pred             HHHHHHHHHHHHHHHhcccch-------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCcc-HHHHHHHH
Confidence            678899999999875532221       123344 377889999999999999999998876543221111 23567778


Q ss_pred             HHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHH-----HHHHhhhcCC---CCchhHHHHHHHHHHh----hc
Q 009514          151 LELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVD-----KLYNHLQKGS---LHPRRFEGILLALADM----CS  217 (533)
Q Consensus       151 ~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~-----~L~~~L~~~~---~~~~~~~~a~~aL~~l----~~  217 (533)
                      ...|.++ ...-.+....+..+-.+...+-..+.+.|.++     .|-.......   .+.-..+.|-......    ..
T Consensus       174 ~~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~  253 (441)
T PF12054_consen  174 LEILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKK  253 (441)
T ss_pred             HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHH
Confidence            8888733 22233444555666555555555555666521     1111111110   0011112222221111    10


Q ss_pred             ---cchhh--hHhhhh-hchHHHHHHhcC----CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCC
Q 009514          218 ---KLECC--RSRCLS-LQVLKLVVDALA----HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTS  286 (533)
Q Consensus       218 ---~~~~~--~~~~~~-~~~l~~l~~~L~----~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~  286 (533)
                         .....  .+.+-+ ..-+..-++..+    .-+..|+...+.++..+..-++.       -..+|.+|+.-++ +++
T Consensus       254 ~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~K-------LnPiIrpLMdSIK~Een  326 (441)
T PF12054_consen  254 SLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKK-------LNPIIRPLMDSIKREEN  326 (441)
T ss_pred             hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-------ccHHHHHHHHHhhcccc
Confidence               00000  011111 011222222222    23456777777777777543221       2367888888887 578


Q ss_pred             HHHHHHHHHHHHHHhc
Q 009514          287 TAVQVAALGAISNIVV  302 (533)
Q Consensus       287 ~~v~~~a~~aL~nl~~  302 (533)
                      ..+|..++.+|..|..
T Consensus       327 ~~LQ~rsA~slA~Li~  342 (441)
T PF12054_consen  327 ELLQQRSAESLARLIQ  342 (441)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988774

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.00  E-value=75  Score=33.80  Aligned_cols=150  Identities=17%  Similarity=0.215  Sum_probs=96.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh----HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514          318 KLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC----KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV  393 (533)
Q Consensus       318 ~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~----~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  393 (533)
                      |.|.+-++..|..+|.+|+..+-++.--.+|+.    .+.+++. -...+-.+|+++-+.|+..|..-+.....--.+.+
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i  255 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI  255 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            344555777899999999999998864444433    3334433 35678889999999999888766655442200000


Q ss_pred             -HHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHH
Q 009514          394 -EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA  472 (533)
Q Consensus       394 -~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a  472 (533)
                       ..++.+   ++..+..-+..+...+|+.+....|..++...  ....+++        -++|.+-..|.+....||.++
T Consensus       256 P~~i~~~---ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le--------~~Lpal~~~l~D~se~VRvA~  322 (1005)
T KOG1949|consen  256 PPTILID---LLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLE--------QLLPALRYSLHDNSEKVRVAF  322 (1005)
T ss_pred             CHHHHHH---HHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHH--------HHHHhcchhhhccchhHHHHH
Confidence             001100   22333333344455688888877777777543  2445664        455788888889999999999


Q ss_pred             HHHHHhhcC
Q 009514          473 VWAVLNLTC  481 (533)
Q Consensus       473 ~~~L~~l~~  481 (533)
                      ...|..+-.
T Consensus       323 vd~ll~ik~  331 (1005)
T KOG1949|consen  323 VDMLLKIKA  331 (1005)
T ss_pred             HHHHHHHHh
Confidence            999887763

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=81.88  E-value=10  Score=31.53  Aligned_cols=94  Identities=16%  Similarity=0.099  Sum_probs=69.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHH
Q 009514          284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL  363 (533)
Q Consensus       284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l  363 (533)
                      ++|+..-...|..+..   .+...      ..++..+.+-+++.++.+...|+..|-.+..+.+...+..+.....+..+
T Consensus        16 ~~dw~~ileicD~In~---~~~~~------k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el   86 (139)
T cd03567          16 EEDWEAIQAFCEQINK---EPEGP------QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL   86 (139)
T ss_pred             CCCHHHHHHHHHHHHc---CCccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence            5566666666666632   11111      24567778888899999999999999988887777778888877778889


Q ss_pred             HhhhCC------CChhHHHHHHHHHHHhh
Q 009514          364 ASLICD------PEPSVQEQALALVRNLV  386 (533)
Q Consensus       364 ~~lL~~------~~~~v~~~a~~~L~~l~  386 (533)
                      ++++..      .+..|+..++.++..-.
T Consensus        87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (139)
T cd03567          87 IKLVSPKYLGSRTSEKVKTKIIELLYSWT  115 (139)
T ss_pred             HHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            998853      56889988887776654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=81.41  E-value=5.5  Score=36.09  Aligned_cols=87  Identities=22%  Similarity=0.257  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHHhhcCCcchHHHHHhhcC-----chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhH
Q 009514          373 SVQEQALALVRNLVDGRINSVEYIFAEDG-----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL  447 (533)
Q Consensus       373 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~-----~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  447 (533)
                      .-|..|+.+|.+++-.+. +++-++..+.     .++..|.++|....++..++-|+-.|.+++.+++.....+-.    
T Consensus       139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~----  213 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAM----  213 (257)
T ss_pred             CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHH----
Confidence            457788899998885432 2333333221     166778888887677888999999999999988765544443    


Q ss_pred             hhhhhhHHHHHHhhccCCh
Q 009514          448 RAENKAQSCIIKFLQSNDS  466 (533)
Q Consensus       448 ~~~~~~~~~lv~~L~~~~~  466 (533)
                        ..+.+..|+.++.+.+.
T Consensus       214 --q~~~i~~Li~FiE~a~~  230 (257)
T PF12031_consen  214 --QKPCISHLIAFIEDAEQ  230 (257)
T ss_pred             --hhchHHHHHHHHHHHHH
Confidence              26778888988876544

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=81.25  E-value=11  Score=31.52  Aligned_cols=72  Identities=18%  Similarity=0.179  Sum_probs=59.7

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHHHhh
Q 009514          315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLV  386 (533)
Q Consensus       315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~  386 (533)
                      .++..|.+-++++++.++..|+..|-.+..+.+......+.+...++.+.+++. ..++.|+..++.++..-+
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~  113 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA  113 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence            467778887888999999999999998888777767778888888888999886 567889999998887665

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.99  E-value=88  Score=33.94  Aligned_cols=164  Identities=15%  Similarity=0.183  Sum_probs=87.6

Q ss_pred             HHHHHhhcHHHHHhhhCCCChhHH-HHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCC--chhHHHHHHHHHH
Q 009514          352 EEIFMELTASLLASLICDPEPSVQ-EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS--KAEIEIQGMYVLG  428 (533)
Q Consensus       352 ~~i~~~~~~~~l~~lL~~~~~~v~-~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~--~~~v~~~a~~~L~  428 (533)
                      +++.+...++.+-+-|+.+|.+.| ..|+..++.|+..-+..+-.++...   ++.+..-....|  ++.-+..+.+...
T Consensus       355 eElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~---v~~~l~~y~~nPS~nWk~kd~aiyL~t  431 (960)
T KOG1992|consen  355 EELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE---VQRLLDQYSKNPSGNWKKKDRAIYLVT  431 (960)
T ss_pred             HHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH---HHHHHHHhccCCCccccccchhhhhhH
Confidence            455566667777788887776654 5677888888876544443444332   222222222223  4455666777777


Q ss_pred             HhccCChhhHHHHHH--HhhHhhhhhhHHHHHHhhcc----CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHH
Q 009514          429 NVATGKESHKEAVMD--QLLLRAENKAQSCIIKFLQS----NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSH  502 (533)
Q Consensus       429 ~l~~~~~~~~~~~~~--~~~~~~~~~~~~~lv~~L~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~  502 (533)
                      .++......+..+..  .+.+..+. +...+..-|.+    ..+-++..+..-+..+-   +.-.+++.     ...+|.
T Consensus       432 alaik~~t~~~Gvtstn~lvdv~~F-f~~~ilp~L~s~~vn~~pilka~aIKy~~~FR---~ql~~~~l-----m~~~p~  502 (960)
T KOG1992|consen  432 ALAIKGQTAKHGVTSTNELVDVVDF-FANQILPDLLSPNVNEFPILKADAIKYIYTFR---NQLGKEHL-----MALLPR  502 (960)
T ss_pred             HHHhhcchhhcceeeccccccHHHH-HHHHhhHHhccCccccccchhhcccceeeeec---ccCChHHH-----HHHHHH
Confidence            776532211111110  00000001 11222223333    34556666655544333   11223332     335899


Q ss_pred             HHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          503 VKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       503 L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      +.+.++.++.-|-..|+.++.++.-
T Consensus       503 li~~L~a~s~vvhsYAA~aiEkil~  527 (960)
T KOG1992|consen  503 LIRFLEAESRVVHSYAAIAIEKLLT  527 (960)
T ss_pred             HHHhccCcchHHHHHHHHHHHhccc
Confidence            9999998888888999999998753

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=80.75  E-value=26  Score=36.13  Aligned_cols=105  Identities=15%  Similarity=0.130  Sum_probs=73.1

Q ss_pred             hhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 009514          228 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR  307 (533)
Q Consensus       228 ~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~  307 (533)
                      -.|.+.+++..+.+++..||...+..|..++......-.  ..-.+.++.|.+-+-+..+.|+.+|+.+|+.+-....+ 
T Consensus        89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n-  165 (885)
T COG5218          89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN-  165 (885)
T ss_pred             HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC-
Confidence            347888899999999999999999999998876443222  23456677777777788999999999999887632211 


Q ss_pred             HHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHH
Q 009514          308 RSTFIRLGGVKLLVQLSK-SMDSTIRLNALRAL  339 (533)
Q Consensus       308 ~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL  339 (533)
                      -+    ......|..+++ +++.++|..|+.-+
T Consensus       166 ee----n~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         166 EE----NRIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             hH----HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            11    122345555554 46677888775444

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.27  E-value=1.1e+02  Score=34.44  Aligned_cols=287  Identities=13%  Similarity=0.084  Sum_probs=144.2

Q ss_pred             cchHHHHh-hhcCCCcchhHHHHHHHHHhhc-CchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhh
Q 009514           17 ENMEFLLS-LLNNESENVSGLGASIISHSCK-TSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVS   93 (533)
Q Consensus        17 ~~i~~L~~-lL~~~~~~v~~~a~~~l~~~~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~   93 (533)
                      ++++.|-+ +|++++++.|......+.++-. .++|-...-+.--+|.++--+.+ +..+|.+-++.|-.-...    ..
T Consensus       466 eAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtv----vn  541 (2799)
T KOG1788|consen  466 EAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTV----VN  541 (2799)
T ss_pred             HHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhh----hc
Confidence            45566655 3567889998888888887543 45555555556667777776776 557777777666442110    01


Q ss_pred             hhccccCcccHHHHHHHHhcCCh-hhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC----CchhhhHHHHH
Q 009514           94 QFVGPDTGRTLSCIIEIVKDRFA-RTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP----GRVGDEASFAF  168 (533)
Q Consensus        94 ~~~~~~~~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~~~~a~~~L  168 (533)
                      .+.    ..-+-.+.-+++.+-. .....-+.....+..... ..++.+.+-|.+..|-..++..    .+-+....   
T Consensus       542 cvP----eqELlSLCvLLqqpIssalkhtIlsffvKLIsfDq-qyKkvlREVGvLevLqddlkqhkll~gpdqysgv---  613 (2799)
T KOG1788|consen  542 CVP----EQELLSLCVLLQQPISSALKHTILSFFVKLISFDQ-QYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGV---  613 (2799)
T ss_pred             cCc----HHHHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHH-HHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhH---
Confidence            110    1123344555554322 222223333333333221 2456666778888887766521    01111100   


Q ss_pred             HhhhcC---CHHHHHHHHHcCcH---HHHHHhhhcCCCCchhHH------HHHHHHHHhhccchhhhHhhhhhchHHHHH
Q 009514          169 SSLIAE---KEDMQKLAFEVNGV---DKLYNHLQKGSLHPRRFE------GILLALADMCSKLECCRSRCLSLQVLKLVV  236 (533)
Q Consensus       169 ~~l~~~---~~~~~~~~~~~~~l---~~L~~~L~~~~~~~~~~~------~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~  236 (533)
                      ......   ++..++..-....+   |++.+   +++....+.+      ..-.+|..+..+++++.+.+.++.++..++
T Consensus       614 sehydrnpss~sf~~~ld~~daiisspklme---SgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklil  690 (2799)
T KOG1788|consen  614 SEHYDRNPSSPSFKQHLDSQDAIISSPKLME---SGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLIL  690 (2799)
T ss_pred             HHHhhcCCCCchhhhccccccceeecchhhc---ccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEE
Confidence            011111   11111111000111   11111   1100000111      112345556667778888888888888888


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC--------C----HHHHHHHHHHHHHHhcCC
Q 009514          237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT--------S----TAVQVAALGAISNIVVDF  304 (533)
Q Consensus       237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--------~----~~v~~~a~~aL~nl~~~~  304 (533)
                      .++-  +.+-|....+.+..+-...+.     -+....+-.+|..|+++        +    -.......+++..+....
T Consensus       691 pfli--ndehRSslLrivscLitvdpk-----qvhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvn  763 (2799)
T KOG1788|consen  691 PFLI--NDEHRSSLLRIVSCLITVDPK-----QVHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVN  763 (2799)
T ss_pred             Eeee--chHHHHHHHHHHHHHhccCcc-----cccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccC
Confidence            7773  333344444444444322111     13345566788888763        1    234455567777777555


Q ss_pred             chhHHHHHHhCcHHHHHHhhc
Q 009514          305 TTRRSTFIRLGGVKLLVQLSK  325 (533)
Q Consensus       305 ~~~~~~~~~~~~i~~L~~ll~  325 (533)
                      ...+..+.++++...|...++
T Consensus       764 gsaqrvFgeatGFslLlttLh  784 (2799)
T KOG1788|consen  764 GSAQRVFGEATGFSLLLTTLH  784 (2799)
T ss_pred             chheeehhccccHHHHHHHHH
Confidence            556667778888887776654

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=80.24  E-value=27  Score=33.16  Aligned_cols=114  Identities=16%  Similarity=0.162  Sum_probs=65.2

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHH----HHHhhc--------CCCHHHHHHHHHHHH
Q 009514          231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP----LVRLLD--------DTSTAVQVAALGAIS  298 (533)
Q Consensus       231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~----Lv~lL~--------~~~~~v~~~a~~aL~  298 (533)
                      ++|.++.++++.++.+|..++.+|..+-...+......+...|..+.    |...+.        ++...+...+..++.
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            68999999999999999999999999976543322111334454433    333443        345667777777777


Q ss_pred             HHhcC-----Cch---hHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514          299 NIVVD-----FTT---RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       299 nl~~~-----~~~---~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~  344 (533)
                      .++.-     ...   ....++..|++..+......+++.++...+..+..+..
T Consensus       200 ~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~  253 (282)
T PF10521_consen  200 SLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID  253 (282)
T ss_pred             HHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence            77431     111   11223333333332222222346666666666655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	533
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-28
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-14
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-27
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-20
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-10
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	8e-24
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-23
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-23
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-21
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-10
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-23
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-22
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-23
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-22
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-16
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-16
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-10
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-21
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-18
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-15
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-19
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-16
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-13
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-12
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-20
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-16
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-16
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-14
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-13
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-19
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-15
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-15
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-12
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-04
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-19
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-16
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-13
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-16
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-14
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-13
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-11
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-13
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-10
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-10
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-08
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-07
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	7e-07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-09
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-09
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	9e-04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-06
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	4e-04
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	6e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	8e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-04
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	9e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-04
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	5e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-04
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	9e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-04
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	5e-04

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  117 bits (295), Expect = 1e-28
 Identities = 70/443 (15%), Positives = 163/443 (36%), Gaps = 26/443 (5%)

Query: 100 TGRTLSCIIEIVKDRFARTRLLASLCL--IVIRNASPCYLQDVGIKTKLINNLLELLD-- 155
            G   S +IE++  +    +L A+     ++ +  +P  + +V     ++   +E L   
Sbjct: 18  GGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPP-IDEVISTPGVVARFVEFLKRK 76

Query: 156 DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM 215
           +   +  E+++  +++ +      ++  +   V      L   S      E  + AL ++
Sbjct: 77  ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS--SEFEDVQEQAVWALGNI 134

Query: 216 CSKLECCRSRCLSLQVLKLVVDALAHDSS-DVRSAACMCLRSVSRSIKNLSAGSFMNETI 274
                 CR   L   +L  ++   +  +   +   A   L ++ R  K+           
Sbjct: 135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG-KSPPPEFAKVSPC 193

Query: 275 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 334
           +  L  LL  + T V   A  A+S +      +    I  G  + LV+L    D  +   
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP 253

Query: 335 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 394
           ALRA+ N++   +D   + I        L  L+  P+ S++++A   + N+  G    ++
Sbjct: 254 ALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ 312

Query: 395 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 454
            +   +  I  A+   L+ A       +  + + N  +G  +      +Q+    E    
Sbjct: 313 TVIDAN--IFPALISILQTAE-FRTRKEAAWAITNATSGGSA------EQIKYLVELGCI 363

Query: 455 SCIIKFLQSNDSRLRTAAVWAVLNLTCSS-------SPGSSGRLVKLHDAGIVSHVKNMV 507
             +   L   DS++   A+  + N+             G +     + +A  +  ++ + 
Sbjct: 364 KPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQ 423

Query: 508 NDPCLDVKLRVKTALEQFNSFDD 530
           +    ++  +    +E +   +D
Sbjct: 424 SHENQEIYQKAFDLIEHYFGTED 446

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 74.9 bits (184), Expect = 1e-14
 Identities = 54/344 (15%), Positives = 106/344 (30%), Gaps = 50/344 (14%)

Query: 44  SCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT 103
           +   SL+ +++  AG +     LL                      +V  Q V       
Sbjct: 93  ASGNSLQTRIVIQAGAVPIFIELLS-----------------SEFEDVQEQAV-----WA 130

Query: 104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVG-- 161
           L  I                              +D  +   ++  LL+L     R+   
Sbjct: 131 LGNIA-----------------------GDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167

Query: 162 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC 221
             A +A S+L   K    + A     ++ L   L               AL+ +      
Sbjct: 168 RNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS--DTDVLADACWALSYLSDGPND 225

Query: 222 CRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL 281
                +   V + +V+ L H+   V S A   + ++       +    +N + +  L+ L
Sbjct: 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ-VILNCSALQSLLHL 284

Query: 282 LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 341
           L     +++  A   ISNI      +  T I       L+ + ++ +   R  A  A+ N
Sbjct: 285 LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344

Query: 342 LIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 385
                  +  + +        L  L+   +  + + AL  + N+
Sbjct: 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 346 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV-DGRINSVEYIFAEDGIIL 404
           A+    E     +  S +  +I    P  Q  A    R L+       ++ + +  G++ 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67

Query: 405 DAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN 464
             V   L+      ++ +  +VL N+A+G       V+    +          I+ L S 
Sbjct: 68  RFV-EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPI-------FIELLSSE 119

Query: 465 DSRLRTAAVWAVLNLTCSSS 484
              ++  AVWA+ N+   S+
Sbjct: 120 FEDVQEQAVWALGNIAGDST 139

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 51/340 (15%), Positives = 89/340 (26%), Gaps = 103/340 (30%)

Query: 22  LLSLLNNESENVSGLGASIISHSCKTSLEQK-LLFDAGVLKRLTSLLGGSLIQRDASLES 80
           L  LL     +V       +S+      ++   + DAGV +RL  LL             
Sbjct: 197 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM------------ 244

Query: 81  IATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDV 140
                 N+ +VVS          L  +  IV     +T+++                   
Sbjct: 245 -----HNDYKVVSP--------ALRAVGNIVTGDDIQTQVI------------------- 272

Query: 141 GIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS 199
            +    + +LL LL  P   +  EA +  S++ A      +   + N    L + LQ   
Sbjct: 273 -LNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 331

Query: 200 LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 259
                                                          R  A   + + + 
Sbjct: 332 FR--------------------------------------------TRKEAAWAITNATS 347

Query: 260 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST--------- 310
                     +    + PL  LL    + +   AL  + NI+                  
Sbjct: 348 GGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYC 407

Query: 311 --FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 348
                  G+  +  L    +  I   A   + +  F  ED
Sbjct: 408 ALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH-YFGTED 446

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  114 bits (287), Expect = 2e-27
 Identities = 68/429 (15%), Positives = 154/429 (35%), Gaps = 26/429 (6%)

Query: 113 DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL--DDPGRVGDEASFAFSS 170
           D   +         I+ R   P    DV I+  ++  L+E +  + P  +  EA++A ++
Sbjct: 100 DMQEQLSATVKFRQILSREHRPP--IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTN 157

Query: 171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ 230
           + +      K+  + + V      L  GS+  +  E  + AL ++       R   L   
Sbjct: 158 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK--EQAIWALGNVAGDSTDYRDYVLQCN 215

Query: 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ 290
            ++ ++     +   +   A   L ++ R  K       +    +  L +L+    T   
Sbjct: 216 AMEPILGLFNSNKPSLIRTATWTLSNLCRG-KKPQPDWSVVSQALPTLAKLIYSMDTETL 274

Query: 291 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 350
           V A  AIS +           I +   K LV+L     + ++  ALRA+ N++    D  
Sbjct: 275 VDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT-GNDLQ 333

Query: 351 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQ 410
            + +        L  L+  P+ +++++A   + N+  G    ++ +   + I        
Sbjct: 334 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP-----L 388

Query: 411 LRIASKAEIEIQ--GMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 468
           +++   AE + +    + + N ++G         D +           +   L+  D+R+
Sbjct: 389 VKLLEVAEYKTKKEACWAISNASSGGLQRP----DIIRYLVSQGCIKPLCDLLEIADNRI 444

Query: 469 RTAAVWAVLNLTCSSSPGSSGR-------LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTA 521
               + A+ N+          R          +  AG +  + N   +    +  +    
Sbjct: 445 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 504

Query: 522 LEQFNSFDD 530
           +E +   ++
Sbjct: 505 IETYFGEEE 513

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 92.8 bits (230), Expect = 4e-20
 Identities = 47/287 (16%), Positives = 117/287 (40%), Gaps = 16/287 (5%)

Query: 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTA 288
           Q L  +   L  D    + +A +  R +            +   +V  LV  + ++    
Sbjct: 87  QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146

Query: 289 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 348
           +Q+ A  A++NI    + +    +    V L +QL  +    ++  A+ AL N+   + D
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206

Query: 349 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVG 408
             ++ +        +  L    +PS+   A   + NL  G+    ++      +   A  
Sbjct: 207 -YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-- 263

Query: 409 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 468
            +L  +   E  +   + +  ++ G +   +AV+D  + +        +++ L    + +
Sbjct: 264 -KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR-------LVELLSHESTLV 315

Query: 469 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK 515
           +T A+ AV N+  + +   +  ++   +AG++  ++ +++ P  ++K
Sbjct: 316 QTPALRAVGNI-VTGNDLQTQVVI---NAGVLPALRLLLSSPKENIK 358

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 46/356 (12%), Positives = 106/356 (29%), Gaps = 62/356 (17%)

Query: 14  LQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQK-LLFDAGVLKRLTSLLGGSLI 72
           LQ   ME +L L N+   ++       +S+ C+    Q      +  L  L  L+     
Sbjct: 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI----- 266

Query: 73  QRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNA 132
                       +  + E +                             A   +  + + 
Sbjct: 267 ------------YSMDTETLVD---------------------------ACWAISYLSDG 287

Query: 133 SPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKL 191
               +Q   I  ++   L+ELL      V   A  A  +++   +   ++      +  L
Sbjct: 288 PQEAIQ-AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPAL 346

Query: 192 YNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAAC 251
              L     + ++       ++++ +         +   ++  +V  L       +  AC
Sbjct: 347 RLLLSSPKENIKKE--ACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404

Query: 252 MCLRSVSRSIKNLSA--GSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS 309
             + + S             +++  + PL  LL+     +    L A+ NI+      + 
Sbjct: 405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE 464

Query: 310 T-----------FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI 354
                         + GG++ +    ++ +  I   A + +       ED   E +
Sbjct: 465 ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETM 520

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 33/209 (15%), Positives = 73/209 (34%), Gaps = 15/209 (7%)

Query: 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME-LTASLLASLICDPEPS 373
             +  + Q   S D   +L+A    R ++        + +    +   L+  +  +    
Sbjct: 87  QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146

Query: 374 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG 433
           +Q +A   + N+  G     + +   D +      + L   S  E++ Q ++ LGNVA  
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAV--PLFIQLLYTGSV-EVKEQAIWALGNVAGD 203

Query: 434 KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 493
              +++ V+    +         I+    SN   L   A W + NL     P     +V 
Sbjct: 204 STDYRDYVLQCNAMEP-------ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV- 255

Query: 494 LHDAGIVSHVKNMVNDPCLDVKLRVKTAL 522
              +  +  +  ++     +  +    A+
Sbjct: 256 ---SQALPTLAKLIYSMDTETLVDACWAI 281

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  100 bits (251), Expect = 8e-24
 Identities = 52/260 (20%), Positives = 98/260 (37%), Gaps = 4/260 (1%)

Query: 167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRC 226
                  E E M+     ++          + +   +  EG L  LAD+C  ++     C
Sbjct: 19  HMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFC 78

Query: 227 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DT 285
               +  LV   L   ++ +R  A   + + S+++  +     +    +  L+RLLD D 
Sbjct: 79  QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAI-QEQVLGLGALRKLLRLLDRDA 137

Query: 286 STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL 345
              V+V AL AIS +V +       F+RL G  +L++  +     +++ +   L+NL+  
Sbjct: 138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197

Query: 346 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD 405
             +       M +    L +L+        E  L  + +LV      V     E  + L+
Sbjct: 198 HPEHKGTLCSMGMV-QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR-ECREPELGLE 255

Query: 406 AVGRQLRIASKAEIEIQGMY 425
            + R      +   E Q   
Sbjct: 256 ELLRHRCQLLQQHEEYQEEL 275

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 29/211 (13%), Positives = 67/211 (31%), Gaps = 20/211 (9%)

Query: 318 KLLVQLSKSMDSTIRLNALRALRNL---IFLAEDKCKEEIFMELTASLLASLICDPEPSV 374
               +  ++ D   R  AL  L +L   +  A D C+    +     L+   +      +
Sbjct: 43  PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQ----LSGMHLLVGRYLEAGAAGL 98

Query: 375 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 434
           + +A  L+           E +       L  + R L   +   + ++ ++ +  +   +
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGA--LRKLLRLLDRDACDTVRVKALFAISCLVREQ 156

Query: 435 ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKL 494
           E+     +            S +++ +Q    +L+  + + + NL              L
Sbjct: 157 EAGLLQFLRL-------DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE----HKGTL 205

Query: 495 HDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 525
              G+V  +  +V          V  AL   
Sbjct: 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 5/143 (3%)

Query: 119 RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL--DDPGRVGDEASFAFSSLIAEKE 176
           R  A+  +          +Q+  +    +  LL LL  D    V  +A FA S L+ E+E
Sbjct: 99  RWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 177 DMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVV 236
                   ++G   L   +Q+     +        L ++       +    S+ +++ +V
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVK--SAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215

Query: 237 DALAHDSSDVRSAACMCLRSVSR 259
             +  + S         L S+  
Sbjct: 216 ALVRTEHSPFHEHVLGALCSLVT 238

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  102 bits (256), Expect = 2e-23
 Identities = 70/430 (16%), Positives = 152/430 (35%), Gaps = 68/430 (15%)

Query: 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL--DDPGRV 160
           ++  I++ +      ++L A+     + +       D  I+  LI   +  L   D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117

Query: 161 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE 220
             E+++A +++ +   +  K   +   +    + L   S H    E  + AL ++     
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGS 175

Query: 221 CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI---- 276
             R   +    +  ++  LA       +     LR+++ ++ NL         +      
Sbjct: 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGY--LRNLTWTLSNLCRNKNPAPPLDAVEQI 233

Query: 277 --PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 334
              LVRLL      V   +  AIS +      R    ++ G V  LV+L  + +  I   
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293

Query: 335 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 394
           ALRA+ N I    D+  +++      ++  SL+ +P+ ++Q++A                
Sbjct: 294 ALRAIGN-IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA---------------- 336

Query: 395 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 454
                                         + + N+  G++   + V++  L+       
Sbjct: 337 -----------------------------TWTMSNITAGRQDQIQQVVNHGLVPF----- 362

Query: 455 SCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV 514
             ++  L   D + +  A WA+ N T   +      LV     GI+  + N+++     +
Sbjct: 363 --LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV---HCGIIEPLMNLLSAKDTKI 417

Query: 515 KLRVKTALEQ 524
              +  A+  
Sbjct: 418 IQVILDAISN 427

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  100 bits (251), Expect = 6e-23
 Identities = 61/372 (16%), Positives = 133/372 (35%), Gaps = 10/372 (2%)

Query: 112 KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSS 170
           K   +  +  ++  L  I + +    + V +    I   + LL  P   + ++A +A  +
Sbjct: 111 KTDCSPIQFESAWALTNIASGTSEQTKAV-VDGGAIPAFISLLASPHAHISEQAVWALGN 169

Query: 171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRR---FEGILLALADMCSKLECCRSRCL 227
           +  +    + L  +   +D L   L    L          +   L+++C           
Sbjct: 170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDA 229

Query: 228 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST 287
             Q+L  +V  L H+  +V + +C  +  ++           + + +V  LV+LL  T  
Sbjct: 230 VEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE-MVVKKGVVPQLVKLLGATEL 288

Query: 288 AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE 347
            +   AL AI NIV     +    I  G + +   L  +  + I+  A   + N+    +
Sbjct: 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 348

Query: 348 DKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAV 407
           D+ ++ +   L   L+  ++   +   Q++A   + N   G            GII + +
Sbjct: 349 DQIQQVVNHGLVPFLV-GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII-EPL 406

Query: 408 GRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR 467
              L      +I    +  + N+    E   E     +++  E      I    +  +  
Sbjct: 407 MNLLSAKD-TKIIQVILDAISNIFQAAEKLGETEKLSIMIE-ECGGLDKIEALQRHENES 464

Query: 468 LRTAAVWAVLNL 479
           +  A++  +   
Sbjct: 465 VYKASLNLIEKY 476

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 96.6 bits (240), Expect = 2e-21
 Identities = 58/362 (16%), Positives = 126/362 (34%), Gaps = 29/362 (8%)

Query: 173 AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSR----CLS 228
           A  +           V+ +   +   +      E  L A       L   +       + 
Sbjct: 44  AMADIGSNQGTVNWSVEDIVKGINSNN-----LESQLQATQAARKLLSREKQPPIDNIIR 98

Query: 229 LQVLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST 287
             ++   V  L   D S ++  +   L +++ S  +    + ++   +   + LL     
Sbjct: 99  AGLIPKFVSFLGKTDCSPIQFESAWALTNIA-SGTSEQTKAVVDGGAIPAFISLLASPHA 157

Query: 288 AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR--ALRNLIFL 345
            +   A+ A+ NI  D +  R   I+ G +  L+ L    D +             L  L
Sbjct: 158 HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217

Query: 346 AEDK--CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 403
             +K        +E     L  L+   +P V   +   +  L DG    +E +  + G++
Sbjct: 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV-VKKGVV 276

Query: 404 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 463
              V  +L  A++  I    +  +GN+ TG +   + V+D   L             L +
Sbjct: 277 PQLV--KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA-------VFPSLLTN 327

Query: 464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 523
             + ++  A W + N+T     G   ++ ++ + G+V  +  +++      +     A+ 
Sbjct: 328 PKTNIQKEATWTMSNITA----GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 383

Query: 524 QF 525
            +
Sbjct: 384 NY 385

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 60.0 bits (145), Expect = 8e-10
 Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 48/271 (17%)

Query: 293 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE 352
            LG   +         +       V+ +V+   S +   +L A +A R L+   +    +
Sbjct: 35  DLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID 94

Query: 353 EIFME-LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL 411
            I    L    ++ L       +Q ++   + N+  G     + +   DG  + A    L
Sbjct: 95  NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV--DGGAIPAFISLL 152

Query: 412 RIASKAEIEIQGMYVLGNVATGKESHKEAVMD--------QLLLRAENKAQSC------- 456
             +  A I  Q ++ LGN+A    + ++ V+          LL   +    +C       
Sbjct: 153 A-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211

Query: 457 -------------------------IIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRL 491
                                    +++ L  ND  +   + WA+  LT   +     R+
Sbjct: 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE----RI 267

Query: 492 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 522
             +   G+V  +  ++    L +      A+
Sbjct: 268 EMVVKKGVVPQLVKLLGATELPIVTPALRAI 298

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 97.7 bits (244), Expect = 3e-23
 Identities = 53/250 (21%), Positives = 99/250 (39%), Gaps = 12/250 (4%)

Query: 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ 290
            L  +   L  D    + +A      +  S  N    + ++   +  LV+LL   +  + 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQIL-SDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 291 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 350
             AL A+SNI      +    I  G +  LVQL  S +  I   AL AL N+     ++ 
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQ 130

Query: 351 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQ 410
            + +        L  L+  P   + ++AL  + N+  G    ++ +  + G +   V  Q
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALV--Q 187

Query: 411 LRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRT 470
           L  +   +I  + ++ L N+A+G    K+AV        E  A   + +     + +++ 
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAV-------KEAGALEKLEQLQSHENEKIQK 240

Query: 471 AAVWAVLNLT 480
            A  A+  L 
Sbjct: 241 EAQEALEKLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 94.3 bits (235), Expect = 6e-22
 Identities = 49/251 (19%), Positives = 105/251 (41%), Gaps = 19/251 (7%)

Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 336
            + + L+      Q++A    S I+ D   +    I  G +  LVQL  S +  I   AL
Sbjct: 16  QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75

Query: 337 RALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
            AL N+     ++  + +        L  L+  P   + ++AL  + N+  G    ++ +
Sbjct: 76  WALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134

Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 454
                +   A+   +++ S    +I    ++ L N+A+G     +AV+D   L A     
Sbjct: 135 IDAGAL--PAL---VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA----- 184

Query: 455 SCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV 514
             +++ L S + ++   A+WA+ N+    +         + +AG +  ++ + +     +
Sbjct: 185 --LVQLLSSPNEQILQEALWALSNIASGGNEQK----QAVKEAGALEKLEQLQSHENEKI 238

Query: 515 KLRVKTALEQF 525
           +   + ALE+ 
Sbjct: 239 QKEAQEALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 43/289 (14%), Positives = 87/289 (30%), Gaps = 64/289 (22%)

Query: 22  LLSLLNNESENVSGLGASIISHSCKTSLEQK-LLFDAGVLKRLTSLLG-GSLIQRDASLE 79
           +   LN++            S       EQ   + DAG L  L  LL   +      +L 
Sbjct: 17  MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76

Query: 80  SIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQD 139
           +++ I     E +                                    + +A       
Sbjct: 77  ALSNIASGGNEQIQ----------------------------------AVIDA------- 95

Query: 140 VGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG 198
                  +  L++LL  P  ++  EA +A S++ +   +  +   +   +  L   L   
Sbjct: 96  -----GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150

Query: 199 SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS 258
           +    +    L AL+++ S         +    L  +V  L+  +  +   A   L    
Sbjct: 151 NEQILQ--EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS--- 205

Query: 259 RSIKNLSAGSFMNETIVI------PLVRLLDDTSTAVQVAALGAISNIV 301
               N+++G    +  V        L +L    +  +Q  A  A+  + 
Sbjct: 206 ----NIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  102 bits (256), Expect = 4e-23
 Identities = 71/529 (13%), Positives = 166/529 (31%), Gaps = 49/529 (9%)

Query: 22  LLSLLNNESENVSGLGASIISH-SCKTSLEQKLLFDAGVLKRLTSLLGGS---LIQRDAS 77
           L  LLN+E + V    A ++   S K +    ++    ++  +   +  +      R  S
Sbjct: 155 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTS 214

Query: 78  --LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 135
             L +++   +    +            +  ++ ++          A   L  +      
Sbjct: 215 GTLHNLSHHREGLLAIFKSGG-------IPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267

Query: 136 YLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNH 194
               V      +  ++ LL+    +     +     L    ++ + +     G   L N 
Sbjct: 268 AKMAV-RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326

Query: 195 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL 254
           ++  +     +      +  + S     +   +    ++ +   L   S  +       L
Sbjct: 327 MRTYTYEKLLWT--TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384

Query: 255 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 314
           R++S +           E ++  LV+LL      V   A G +SN+  +    +    ++
Sbjct: 385 RNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440

Query: 315 GGVKLLVQL--SKSMDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDP 370
           GG++ LV+          I   A+ ALR+L    +D    +  + +     ++  L+  P
Sbjct: 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP 500

Query: 371 EP-SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 429
               + +  + L+RNL     N       E G I   V  QL + +  + + +       
Sbjct: 501 SHWPLIKATVGLIRNLALCPANHAP--LREQGAIPRLV--QLLVRAHQDTQRRTSMGGTQ 556

Query: 430 VATGKESHKEAVMDQ-------LLLRAENKAQ-------SCIIKFLQSNDSRLRTAAVWA 475
               +    E +++        L     N+            ++ L S    ++  A   
Sbjct: 557 QQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 616

Query: 476 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ 524
           +  L              +   G  + +  +++     V       L +
Sbjct: 617 LCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 660

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 99.0 bits (246), Expect = 5e-22
 Identities = 47/362 (12%), Positives = 109/362 (30%), Gaps = 24/362 (6%)

Query: 163 EASFAFSSLIAEKEDMQKLA-FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC 221
           E S      +    + Q  A      + +L   L              + +  +  K   
Sbjct: 126 EPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNK--AAVMVHQLSKKEAS 183

Query: 222 CRSRCLSLQVLKLVVDALAHDSS-DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR 280
             +   S Q++  +V  + + +  +        L ++S   + L A        +  LV 
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA--IFKSGGIPALVN 241

Query: 281 LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 340
           +L     +V   A+  + N+++     +      GG++ +V L    +          L+
Sbjct: 242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301

Query: 341 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAED 400
            L +  ++     +      +L+  +       +      +++ L     N       E 
Sbjct: 302 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA--IVEA 359

Query: 401 GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 460
           G +  A+G  L       +    ++ L N++                         +++ 
Sbjct: 360 GGM-QALGLHLT-DPSQRLVQNCLWTLRNLSDAATKQ----------EGMEGLLGTLVQL 407

Query: 461 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKT 520
           L S+D  + T A   + NLTC     +    + +   G +  +   V        +    
Sbjct: 408 LGSDDINVVTCAAGILSNLTC----NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 463

Query: 521 AL 522
             
Sbjct: 464 IC 465

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 81.2 bits (200), Expect = 3e-16
 Identities = 41/295 (13%), Positives = 93/295 (31%), Gaps = 19/295 (6%)

Query: 231 VLKLVVDALAHDSSDVRSAA--CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 288
           +        +   ++V+  A     L+    ++ N    + +    +  L +LL+D    
Sbjct: 106 MQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQV 165

Query: 289 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAE 347
           V   A   +  +     +R +       V  +V+ +  + D          L NL     
Sbjct: 166 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS--HH 223

Query: 348 DKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAV 407
            +    IF       L +++  P  SV   A+  + NL+  +  +   +    G+    +
Sbjct: 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGL--QKM 281

Query: 408 GRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR 467
              L   +  +        L  +A G +  K  ++     +A       ++  +++    
Sbjct: 282 VALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA-------LVNIMRTYTYE 333

Query: 468 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 522
                   VL +    S         + +AG +  +   + DP   +       L
Sbjct: 334 KLLWTTSRVLKVLSVCSSNKP----AIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 80.1 bits (197), Expect = 6e-16
 Identities = 55/389 (14%), Positives = 108/389 (27%), Gaps = 46/389 (11%)

Query: 22  LLSLLNNESENVSGLGASIISHSCKTSLEQKLLF-DAGVLKRLTSLLG-GSLIQRDASLE 79
           L++++   +        S +          K    +AG ++ L   L   S       L 
Sbjct: 323 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 382

Query: 80  SIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQD 139
           ++  +     +             L  +++++          A+  L  +   +      
Sbjct: 383 TLRNLSDAATKQEGMEGL------LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 436

Query: 140 VGIKTKLINNLLELL---DDPGRVGDEASFAFSSLIA---EKEDMQKLAFEVNGVDKLYN 193
           V  +   I  L+  +    D   + + A  A   L +   + E  Q       G+  +  
Sbjct: 437 V-CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK 495

Query: 194 HLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRS----- 248
            L   S  P       + L    +      +       +  +V  L     D +      
Sbjct: 496 LLHPPSHWPLIKA--TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553

Query: 249 -----------------AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQV 291
                            A    L  ++R I N           +   V+LL      +Q 
Sbjct: 554 GTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV--IRGLNTIPLFVQLLYSPIENIQR 611

Query: 292 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK 351
            A G +  +  D           G    L +L  S +  +   A   L     ++EDK  
Sbjct: 612 VAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR---MSEDK-P 666

Query: 352 EEIFMELTASLLASLICDPEPSVQEQALA 380
           ++    L+  L +SL      +  E    
Sbjct: 667 QDYKKRLSVELTSSLFRTEPMTWNETGDL 695

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 62.4 bits (151), Expect = 2e-10
 Identities = 53/344 (15%), Positives = 100/344 (29%), Gaps = 31/344 (9%)

Query: 19  MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-GSLIQRDAS 77
           M+ L   L + S+ +       + +        K     G+L  L  LLG   +     +
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCA 419

Query: 78  LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLAS-LCLIVIRNASPCY 136
              ++ +  NN +             L   +    DR   T      L  +  R+     
Sbjct: 420 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEM 479

Query: 137 LQDVGIKTKLINNLLELLDDPGRVGD-EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL 195
            Q+       +  +++LL  P      +A+      +A          E   + +L   L
Sbjct: 480 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 539

Query: 196 QKGSLHPRRF--------------------EGILLALADMCSKLECCRSRCLSLQVLKLV 235
            +     +R                     E    AL  +   +   R     L  + L 
Sbjct: 540 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHN-RIVIRGLNTIPLF 598

Query: 236 VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALG 295
           V  L     +++  A   L  +++  +   A     E    PL  LL   +  V   A  
Sbjct: 599 VQLLYSPIENIQRVAAGVLCELAQDKEAAEA--IEAEGATAPLTELLHSRNEGVATYAAA 656

Query: 296 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL 339
            +  +  D   +   + +   V+L   L ++   T        L
Sbjct: 657 VLFRMSED---KPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  100 bits (250), Expect = 2e-22
 Identities = 69/532 (12%), Positives = 166/532 (31%), Gaps = 49/532 (9%)

Query: 22  LLSLLNNESENVSGLGASIISH-SCKTSLEQKLLFDAGVLKRLTSLLGGS---LIQRDAS 77
           L  LLN+E + V    A ++   S K +    ++    ++  +   +  +      R  +
Sbjct: 19  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 78

Query: 78  --LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 135
             L +++   +    +            +  +++++          A   L  +      
Sbjct: 79  GTLHNLSHHREGLLAIFK-------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 131

Query: 136 YLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNH 194
               V      +  ++ LL+    +     +     L    ++ + +     G   L N 
Sbjct: 132 AKMAV-RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190

Query: 195 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL 254
           ++  +            L  +       +   +    ++ +   L   S  +       L
Sbjct: 191 MRTYTYEKLL-WTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248

Query: 255 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 314
           R++S +           E ++  LV+LL      V   A G +SN+  +    +    ++
Sbjct: 249 RNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 304

Query: 315 GGVKLLVQL--SKSMDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDP 370
           GG++ LV+          I   A+ ALR+L    ++    +  + +     ++  L+  P
Sbjct: 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 364

Query: 371 EP-SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 429
               + +  + L+RNL     N       E G I   V  QL + +  + + +       
Sbjct: 365 SHWPLIKATVGLIRNLALCPANHAP--LREQGAIPRLV--QLLVRAHQDTQRRTSMGGTQ 420

Query: 430 VATGKESHKEAVMDQ-------LLLRAENKAQ-------SCIIKFLQSNDSRLRTAAVWA 475
               +    E +++        L     N+            ++ L S    ++  A   
Sbjct: 421 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 480

Query: 476 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527
           +  L              +   G  + +  +++     V       L + + 
Sbjct: 481 LCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 96.2 bits (239), Expect = 4e-21
 Identities = 46/298 (15%), Positives = 102/298 (34%), Gaps = 23/298 (7%)

Query: 227 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP-LVRLLDDT 285
           L+ + +  +   L  +   V + A + +  +S+   +  A   M    ++  +VR + +T
Sbjct: 11  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA--IMRSPQMVSAIVRTMQNT 68

Query: 286 S-TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344
           +         G + N+        +   + GG+  LV++  S   ++   A+  L NL+ 
Sbjct: 69  NDVETARCTAGTLHNLSHHREGLLA-IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL- 126

Query: 345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIIL 404
           L ++  K  + +      + +L+              ++ L  G   S   I A  G   
Sbjct: 127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP-- 184

Query: 405 DAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN 464
            A+   +R  +  ++      VL  ++    +    V        E      +   L   
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV--------EAGGMQALGLHLTDP 236

Query: 465 DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 522
             RL    +W + NL       S     +    G++  +  ++    ++V       L
Sbjct: 237 SQRLVQNCLWTLRNL-------SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 86.5 bits (214), Expect = 5e-18
 Identities = 52/366 (14%), Positives = 106/366 (28%), Gaps = 33/366 (9%)

Query: 19  MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-GSLIQRDAS 77
           M+ L   L + S+ +       + +    +   K     G+L  L  LLG   +     +
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINVVTCA 283

Query: 78  LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRF-ARTRLLASLCLIVIRNASPCY 136
              ++ +  NN +             L   +    DR       + +L  +  R+     
Sbjct: 284 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 343

Query: 137 LQDVGIKTKLINNLLELLDDPGRVGD-EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL 195
            Q+       +  +++LL  P      +A+      +A          E   + +L   L
Sbjct: 344 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 403

Query: 196 QKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR 255
            +                          ++  +                ++       L 
Sbjct: 404 VRAH----------------------QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 441

Query: 256 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 315
            ++R + N           +   V+LL      +Q  A G +  +  D           G
Sbjct: 442 ILARDVHNRIV--IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEG 498

Query: 316 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 375
               L +L  S +  +   A   L  +        K+ + +ELT+SL  +   +P    +
Sbjct: 499 ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRT---EPMAWNE 555

Query: 376 EQALAL 381
              L L
Sbjct: 556 TADLGL 561

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 65/401 (16%), Positives = 132/401 (32%), Gaps = 45/401 (11%)

Query: 20  EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLF-DAGVLKRLTSLLGGS---LIQRD 75
           + +++LLN  +     +    +      + E KL+   +G  + L +++       +   
Sbjct: 143 QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 202

Query: 76  AS-LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP 134
            S +  + ++  +N   + +  G      +  +   + D   R        L  + +A+ 
Sbjct: 203 TSRVLKVLSVCSSNKPAIVEAGG------MQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 256

Query: 135 CYLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYN 193
                 G    L+  L++LL      V   A+   S+L       + +  +V G++ L  
Sbjct: 257 KQEGMEG----LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 312

Query: 194 HLQKGSLHPRRFEGILLALADMCSK---LECCRSRCLSLQVLKLVVDALAHDSSD-VRSA 249
            + +        E  + AL  + S+    E  ++       L +VV  L   S   +  A
Sbjct: 313 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372

Query: 250 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR-- 307
               +R+++    N +      +  +  LV+LL       Q       +        R  
Sbjct: 373 TVGLIRNLALCPANHAP--LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 430

Query: 308 -------------------RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 348
                              R     L  + L VQL  S    I+  A   L  L    + 
Sbjct: 431 EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA--QDK 488

Query: 349 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389
           +  E I  E   + L  L+      V   A A++  + + +
Sbjct: 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 92.5 bits (230), Expect = 5e-20
 Identities = 46/298 (15%), Positives = 102/298 (34%), Gaps = 23/298 (7%)

Query: 227 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP-LVRLLDDT 285
           L+ + +  +   L  +   V + A + +  +S+   +  A   M    ++  +VR + +T
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA--IMRSPQMVSAIVRTMQNT 71

Query: 286 S-TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344
           +         G + N+        +   + GG+  LV++  S   ++   A+  L NL+ 
Sbjct: 72  NDVETARCTAGTLHNLSHHREGLLA-IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL- 129

Query: 345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIIL 404
           L ++  K  + +      + +L+              ++ L  G   S   I A  G   
Sbjct: 130 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP-- 187

Query: 405 DAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN 464
            A+   +R  +  ++      VL  ++    +    V        E      +   L   
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV--------EAGGMQALGLHLTDP 239

Query: 465 DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 522
             RL    +W + NL       S     +    G++  +  ++    ++V       L
Sbjct: 240 SQRLVQNCLWTLRNL-------SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 92.2 bits (229), Expect = 5e-20
 Identities = 40/275 (14%), Positives = 95/275 (34%), Gaps = 17/275 (6%)

Query: 211 ALADMCSKLECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLSAGSF 269
            +  +  K     +   S Q++  +V  + + +  +        L ++S   + L A   
Sbjct: 40  MVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA--I 97

Query: 270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS 329
                +  LV++L     +V   A+  + N+++     +      GG++ +V L    + 
Sbjct: 98  FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 157

Query: 330 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389
                    L+ L +  ++     +      +L+  +       +      +++ L    
Sbjct: 158 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 217

Query: 390 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA 449
            N       E G +  A+G  L   S+  +    ++ L N++                  
Sbjct: 218 SNKPA--IVEAGGM-QALGLHLTDPSQ-RLVQNCLWTLRNLSDAATKQ----------EG 263

Query: 450 ENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS 484
                  +++ L S+D  + T A   + NLTC++ 
Sbjct: 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 90.6 bits (225), Expect = 2e-19
 Identities = 70/529 (13%), Positives = 165/529 (31%), Gaps = 49/529 (9%)

Query: 22  LLSLLNNESENVSGLGASIISH-SCKTSLEQKLLFDAGVLKRLTSLLGGS---LIQRDAS 77
           L  LLN+E + V    A ++   S K +    ++    ++  +   +  +      R  +
Sbjct: 22  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81

Query: 78  --LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 135
             L +++   +    +            +  +++++          A   L  +      
Sbjct: 82  GTLHNLSHHREGLLAIFKSGG-------IPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 136 YLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNH 194
               V      +  ++ LL+    +     +     L    ++ + +     G   L N 
Sbjct: 135 AKMAV-RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193

Query: 195 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL 254
           ++  +            L  +       +   +    ++ +   L   S  +       L
Sbjct: 194 MRTYTYEKLL-WTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251

Query: 255 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 314
           R++S +           E ++  LV+LL      V   A G +SN+  +    +    ++
Sbjct: 252 RNLSDAATKQEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307

Query: 315 GGVKLLVQL--SKSMDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDP 370
           GG++ LV+          I   A+ ALR+L    ++    +  + +     ++  L+  P
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367

Query: 371 EPSVQEQA-LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 429
                 +A + L+RNL     N       E G I   V  QL + +  + + +       
Sbjct: 368 SHWPLIKATVGLIRNLALCPANHAP--LREQGAIPRLV--QLLVRAHQDTQRRTSMGGTQ 423

Query: 430 VATGKESHKEAVMD-------QLLLRAENKAQ-------SCIIKFLQSNDSRLRTAAVWA 475
               +    E +++        L     N+            ++ L S    ++  A   
Sbjct: 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 483

Query: 476 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ 524
           +  L              +   G  + +  +++     V       L +
Sbjct: 484 LCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 81.0 bits (200), Expect = 2e-16
 Identities = 63/477 (13%), Positives = 145/477 (30%), Gaps = 71/477 (14%)

Query: 22  LLSLLNNESENVSGLGASIISH-SCKTSLEQKLLFDAGVLKRLTSLL--GGSLIQRDAS- 77
           L+ +L +  ++V     + + +        +  +  AG L+++ +LL           + 
Sbjct: 106 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 165

Query: 78  -LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC- 135
            L+ +A   + +  ++    G         ++ I++       L       V++  S C 
Sbjct: 166 CLQILAYGNQESKLIILASGG------PQALVNIMRTYTYEKLLWT--TSRVLKVLSVCS 217

Query: 136 YLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNH 194
             +   ++   +  L   L DP  R+     +   +L       + +      +  L   
Sbjct: 218 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLGTLVQL 274

Query: 195 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL--AHDSSDVRSAACM 252
           L                L+++       +     +  ++ +V  +  A D  D+   A  
Sbjct: 275 LGSDD--INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332

Query: 253 CLRSVSRSIKNLSAGSFMNETI---------VIPLVRLLDDTSTAVQVAALGAISNIVVD 303
            LR       +L++     E           +  +V+LL   S    + A   +   +  
Sbjct: 333 ALR-------HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385

Query: 304 FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 363
                +     G +  LVQL        +           F+   + +E   +E     L
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE--IVEGCTGAL 443

Query: 364 ASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG 423
             L  D    +  + L  +   V               ++   +    R+A+        
Sbjct: 444 HILARDVHNRIVIRGLNTIPLFVQ--------------LLYSPIENIQRVAAGV------ 483

Query: 424 MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
              L  +A  KE+ +              A + + + L S +  + T A   +  ++
Sbjct: 484 ---LCELAQDKEAAEAIE--------AEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 44/338 (13%), Positives = 94/338 (27%), Gaps = 30/338 (8%)

Query: 8   APKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLL 67
           + K   ++   M+ L   L + S+ +       + +    +   K     G+L  L  LL
Sbjct: 218 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA--TKQEGMEGLLGTLVQLL 275

Query: 68  G-GSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRF-ARTRLLASLC 125
           G   +     +   ++ +  NN +             L   +    DR       + +L 
Sbjct: 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335

Query: 126 LIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFE 184
            +  R+      Q+       +  +++LL  P      +A+      +A          E
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395

Query: 185 VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS 244
              + +L   L +                          ++  +                
Sbjct: 396 QGAIPRLVQLLVRAH----------------------QDTQRRTSMGGTQQQFVEGVRME 433

Query: 245 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 304
           ++       L  ++R + N           +   V+LL      +Q  A G +  +  D 
Sbjct: 434 EIVEGCTGALHILARDVHNRIV--IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD- 490

Query: 305 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 342
                     G    L +L  S +  +   A   L  +
Sbjct: 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 66.7 bits (163), Expect = 8e-12
 Identities = 25/227 (11%), Positives = 68/227 (29%), Gaps = 18/227 (7%)

Query: 296 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF 355
           A+ N++     +    +    +  L +L    D  +   A   +  L      +      
Sbjct: 1   AVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 356 MELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS 415
            ++ ++++ ++    +          + NL   R   +     + G I  A+ + L    
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA--IFKSGGI-PALVKMLGSPV 114

Query: 416 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWA 475
              +    +  L N+   +E  K AV               ++  L   + +        
Sbjct: 115 D-SVLFYAITTLHNLLLHQEGAKMAV-------RLAGGLQKMVALLNKTNVKFLAITTDC 166

Query: 476 VLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 522
           +  L   +        + +  +G    + N++     +  L   + +
Sbjct: 167 LQILAYGNQESK----LIILASGGPQALVNIMRTYTYEKLLWTTSRV 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 86.9 bits (216), Expect = 8e-20
 Identities = 40/207 (19%), Positives = 80/207 (38%), Gaps = 17/207 (8%)

Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 336
            +V+ L+        +AL  +S I      +    I  G +  LVQL  S +  I   AL
Sbjct: 16  QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75

Query: 337 RALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
            AL N+     ++  + +        L  L+  P   + ++AL  + N+  G    ++ +
Sbjct: 76  WALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134

Query: 397 FAEDGI-ILDAVGRQLRIASKAEIEIQ--GMYVLGNVATGKESHKEAVMDQLLLRAENKA 453
                +  L      +++ S    +I    ++ L N+A+G    K+AV +   L      
Sbjct: 135 IDAGALPAL------VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK---- 184

Query: 454 QSCIIKFLQSNDSRLRTAAVWAVLNLT 480
              + +     + +++  A  A+  L 
Sbjct: 185 ---LEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 14/178 (7%)

Query: 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI------PLVRLLDD 284
            L  +V  L         +A   L         +++G       VI       LV+LL  
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLS-------QIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 285 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344
            +  +   AL A+SNI      +    I  G +  LVQL  S +  I   AL AL N+  
Sbjct: 66  PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125

Query: 345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 402
              +   + +        L  L+  P   + ++AL  + N+  G     + +     +
Sbjct: 126 GGNE-QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 76.5 bits (189), Expect = 4e-16
 Identities = 38/161 (23%), Positives = 61/161 (37%), Gaps = 14/161 (8%)

Query: 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI------PLVRLLDD 284
            L  +V  L+  +  +   A   L        N+++G       VI       LV+LL  
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALS-------NIASGGNEQIQAVIDAGALPALVQLLSS 107

Query: 285 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344
            +  +   AL A+SNI      +    I  G +  LVQL  S +  I   AL AL N+  
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167

Query: 345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 385
              ++ K+ +        L  L       +Q++A   +  L
Sbjct: 168 GGNEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 39/211 (18%), Positives = 90/211 (42%), Gaps = 15/211 (7%)

Query: 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSV 374
             +  +VQ   S D     +ALR L  +     ++  + +        L  L+  P   +
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQI 70

Query: 375 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 434
            ++AL  + N+  G    ++ +     +   A+ + L  +   +I  + ++ L N+A+G 
Sbjct: 71  LQEALWALSNIASGGNEQIQAVIDAGAL--PALVQLLS-SPNEQILQEALWALSNIASGG 127

Query: 435 ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKL 494
               +AV+D   L A       +++ L S + ++   A+WA+ N+      G + +   +
Sbjct: 128 NEQIQAVIDAGALPA-------LVQLLSSPNEQILQEALWALSNIAS----GGNEQKQAV 176

Query: 495 HDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 525
            +AG +  ++ + +     ++   + ALE+ 
Sbjct: 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 38/203 (18%), Positives = 73/203 (35%), Gaps = 16/203 (7%)

Query: 147 INNLLELLDDPGR-VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF 205
           +  +++ L+ P +     A    S + +   +  +   +   +  L   L   +      
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL-- 71

Query: 206 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 265
           +  L AL+++ S         +    L  +V  L+  +  +   A   L        N++
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS-------NIA 124

Query: 266 AGSFMNETIVI------PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKL 319
           +G       VI       LV+LL   +  +   AL A+SNI      ++      G ++ 
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK 184

Query: 320 LVQLSKSMDSTIRLNALRALRNL 342
           L QL    +  I+  A  AL  L
Sbjct: 185 LEQLQSHENEKIQKEAQEALEKL 207

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 89.6 bits (222), Expect = 3e-19
 Identities = 60/349 (17%), Positives = 124/349 (35%), Gaps = 32/349 (9%)

Query: 194 HLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQV-LKLVVDALAHDSSDVRSAACM 252
           H Q      RR   +L  L  + +  E C     + +  +    + +          A  
Sbjct: 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVC 170

Query: 253 CLRSVSRSIKNLSAGSFMNETIVIPLVRLL-----------DDTSTAVQVAALGAISNIV 301
            L  +S   ++  A        +  +  LL           D  S  ++  A  A++N+ 
Sbjct: 171 VLMKLSFDEEHRHA--MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228

Query: 302 VDFTTRRSTFIRL-GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360
                 ++T   + G ++ LV   KS    ++      LRNL + A+   K+ +    + 
Sbjct: 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288

Query: 361 SLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI 419
             L     + +  S  +  L+ + NL      +   I A DG +   VG     +    +
Sbjct: 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348

Query: 420 EIQG-----MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW 474
            I       +  + ++    E H++ + +   L+        +++ L+S+   + + A  
Sbjct: 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQT-------LLQHLKSHSLTIVSNACG 401

Query: 475 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 523
            + NL+  +          L D G VS +KN+++     + +    AL 
Sbjct: 402 TLWNLSARNPKDQ----EALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 78.1 bits (192), Expect = 1e-15
 Identities = 45/259 (17%), Positives = 85/259 (32%), Gaps = 31/259 (11%)

Query: 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI-------PLVRLLDDTSTAVQVAA 293
           H S  +R  A M L        NL+ G   N+  +         LV  L   S  +Q   
Sbjct: 211 HYSITLRRYAGMALT-------NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 263

Query: 294 LGAISNIVVDFTTR-RSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDK-- 349
              + N+        + T   +G VK L++   +    +   + L AL NL     +   
Sbjct: 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323

Query: 350 --CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEY--IFAEDGIILD 405
             C  +  +      L         ++ E    ++RN+      + ++  I  E+  +  
Sbjct: 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 383

Query: 406 AVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND 465
            +  Q   +    I       L N++      +EA+        +  A S +   + S  
Sbjct: 384 LL--QHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-------WDMGAVSMLKNLIHSKH 434

Query: 466 SRLRTAAVWAVLNLTCSSS 484
             +   +  A+ NL  +  
Sbjct: 435 KMIAMGSAAALRNLMANRP 453

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 76.9 bits (189), Expect = 3e-15
 Identities = 58/406 (14%), Positives = 121/406 (29%), Gaps = 33/406 (8%)

Query: 18  NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDAS 77
            +E + SLL+    +     +  +     +      +  +G L  L  LL G+       
Sbjct: 30  KVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLL 89

Query: 78  LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLI-VIRNASPCY 136
             S     + + E  ++         L  II    D     R +  L L+  IR      
Sbjct: 90  GNS-----RGSKEARARAS-----AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETC 139

Query: 137 LQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQ 196
            +        ++     +  P       +      ++  E+ +    E+ G+  +   LQ
Sbjct: 140 WEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQ 199

Query: 197 KGSLHPRRFE------------GILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS 244
                                   L  L      +    + C     ++ +V  L  +S 
Sbjct: 200 VDCEMYGLTNDHYSITLRRYAGMALTNLT--FGDVANKATLCSMKGCMRALVAQLKSESE 257

Query: 245 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST-AVQVAALGAISNIVVD 303
           D++      LR++S      S  +      V  L+    +    +   + L A+ N+   
Sbjct: 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317

Query: 304 FTTRRSTFIRLGG-----VKLLVQLSKSMDSTIRLNALRALRNLIFLA--EDKCKEEIFM 356
            T  ++    + G     V  L   S++    I  +    LRN+  L    +  ++ +  
Sbjct: 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 377

Query: 357 ELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 402
                 L   +     ++   A   + NL        E ++    +
Sbjct: 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 423

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 43/220 (19%), Positives = 73/220 (33%), Gaps = 20/220 (9%)

Query: 147 INNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAF-EVNGVDKLYNHLQKGSLHPRR 204
           +  L+  L      +    +    +L    +   K    EV  V  L     +       
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304

Query: 205 FE--GILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS----DVRSAACMCLRSVS 258
                 L  L+  C+  E     C     L  +V  L + S      +  +    LR+VS
Sbjct: 305 KSVLSALWNLSAHCT--ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362

Query: 259 RSIKNLSAGSFMNETIVI------PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFI 312
               +L A +  +  I+        L++ L   S  +   A G + N+       +    
Sbjct: 363 ----SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW 418

Query: 313 RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE 352
            +G V +L  L  S    I + +  ALRNL+     K K+
Sbjct: 419 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 458

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 42/267 (15%), Positives = 75/267 (28%), Gaps = 43/267 (16%)

Query: 272 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD--- 328
            T V  +  LL    T  +      +  +     +  S   + G + LL+QL    D   
Sbjct: 28  GTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMR-QSGCLPLLIQLLHGNDKDS 86

Query: 329 ---------STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQAL 379
                       R  A  AL N+I    D                    D     + + L
Sbjct: 87  VLLGNSRGSKEARARASAALHNIIHSQPD--------------------DKRGRREIRVL 126

Query: 380 ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE 439
            L+  +        E+  A +  + D     +  A         + VL  ++   E H+ 
Sbjct: 127 HLLEQIRAYCETCWEWQEAHEPGM-DQDKNPMP-APVEHQICPAVCVLMKLSF-DEEHRH 183

Query: 440 AVMD----QLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH 495
           A+ +    Q +                     LR  A  A+ NLT         +     
Sbjct: 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA---NKATLCS 240

Query: 496 DAGIVSHVKNMVNDPCLDVKLRVKTAL 522
             G +  +   +     D++  + + L
Sbjct: 241 MKGCMRALVAQLKSESEDLQQVIASVL 267

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 54/333 (16%), Positives = 117/333 (35%), Gaps = 36/333 (10%)

Query: 209 LLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 268
           + A  + C + +      +         + +          A   L  +S   ++  A  
Sbjct: 16  IRAYCETCWEWQEAHEPGMDQ-----DKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA-- 68

Query: 269 FMNETIVIPLVRLL-----------DDTSTAVQVAALGAISNIVVDFTTRRSTFIRL-GG 316
                 +  +  LL           D  S  ++  A  A++N+       ++T   + G 
Sbjct: 69  MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128

Query: 317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE-PSVQ 375
           ++ LV   KS    ++      LRNL + A+   K+ +    +   L     + +  S  
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 376 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG-----MYVLGNV 430
           +  L+ + NL      +   I A DG +   VG     +    + I       +  + ++
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 431 ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGR 490
               E H++ + +   L+        +++ L+S+   + + A   + NL+      +   
Sbjct: 249 IATNEDHRQILRENNCLQ-------TLLQHLKSHSLTIVSNACGTLWNLSA----RNPKD 297

Query: 491 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 523
              L D G VS +KN+++     + +    AL 
Sbjct: 298 QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 78.0 bits (192), Expect = 7e-16
 Identities = 45/259 (17%), Positives = 85/259 (32%), Gaps = 31/259 (11%)

Query: 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI-------PLVRLLDDTSTAVQVAA 293
           H S  +R  A M L        NL+ G   N+  +         LV  L   S  +Q   
Sbjct: 95  HYSITLRRYAGMALT-------NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 147

Query: 294 LGAISNIVVDFTTR-RSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDK-- 349
              + N+        + T   +G VK L++   +    +   + L AL NL     +   
Sbjct: 148 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207

Query: 350 --CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEY--IFAEDGIILD 405
             C  +  +      L         ++ E    ++RN+      + ++  I  E+  +  
Sbjct: 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 267

Query: 406 AVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND 465
            +  Q   +    I       L N++      +EA+        +  A S +   + S  
Sbjct: 268 LL--QHLKSHSLTIVSNACGTLWNLSARNPKDQEAL-------WDMGAVSMLKNLIHSKH 318

Query: 466 SRLRTAAVWAVLNLTCSSS 484
             +   +  A+ NL  +  
Sbjct: 319 KMIAMGSAAALRNLMANRP 337

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 69.9 bits (171), Expect = 4e-13
 Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 16/228 (7%)

Query: 147 INNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAF-EVNGVDKLYNHLQKGSLHPRR 204
           +  L+  L      +    +    +L    +   K    EV  V  L     +       
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 205 FE--GILLALADMCS--KLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS 260
                 L  L+  C+  K + C        ++  +      ++  +  +    LR+VS  
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS-- 246

Query: 261 IKNLSAGSFMNETIVI------PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 314
             +L A +  +  I+        L++ L   S  +   A G + N+       +     +
Sbjct: 247 --SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 304

Query: 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL 362
           G V +L  L  S    I + +  ALRNL+     K K+   M   +SL
Sbjct: 305 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSL 352

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 81.8 bits (201), Expect = 2e-16
 Identities = 66/520 (12%), Positives = 158/520 (30%), Gaps = 34/520 (6%)

Query: 13  FLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGV--LKRLTSLLGGS 70
             +E  ++ +L++   + E    +    +  +     + K L + GV  LKRL       
Sbjct: 286 VAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHS-KND 344

Query: 71  LIQRDA--SLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIV 128
            I+  A   L  + +    +  +     G       +C   ++K    +     +   + 
Sbjct: 345 GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA 404

Query: 129 IRNASPCYLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLIAEKEDMQKLAFEVNG 187
                    + +      I+ L++L               F +L    E  + L   +  
Sbjct: 405 YLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIEL 464

Query: 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVR 247
                 H+ +                D    +    +   +  +   +      +S + +
Sbjct: 465 AKFAKQHIPEE------------HELDDVDFINKRITVLANEGITTALCALAKTESHNSQ 512

Query: 248 SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV--DFT 305
                 L +V    +    G  + E  V  L+R+  + +   +  A  A++ I +  +  
Sbjct: 513 ELIARVLNAVCGLKEL--RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE 570

Query: 306 TRRSTFIRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLA 364
              S    L  ++ L+  L +   +     +L AL NL  + E   ++ I  E   S + 
Sbjct: 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES-VRQRIIKEQGVSKIE 629

Query: 365 SLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM 424
             + +    +   A   + NLV        +    D +   A    L      E      
Sbjct: 630 YYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLA---LLCEDEDEETATACA 686

Query: 425 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS 484
             L  + +      E ++              +   + +    ++   +  +LN+  ++ 
Sbjct: 687 GALAIITSVSVKCCEKILA------IASWLDILHTLIANPSPAVQHRGIVIILNM-INAG 739

Query: 485 PGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ 524
              + +L +     ++S +  + +D     +      L  
Sbjct: 740 EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 74.9 bits (183), Expect = 3e-14
 Identities = 70/402 (17%), Positives = 142/402 (35%), Gaps = 18/402 (4%)

Query: 5   SKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASII---SHSCKTSLEQKLLFDAGVLK 61
           + + P  D    +  E     L    ++      +       +     ++KL+ D   + 
Sbjct: 365 AAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIH 424

Query: 62  RLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLL 121
            L  L  G      + L  + T F N           +    L  +IE+ K         
Sbjct: 425 ALMDLARGG---NQSCLYGVVTTFVNLC------NAYEKQEMLPEMIELAKFAKQHIPEE 475

Query: 122 ASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKL 181
             L  +   N     L + GI T L         +     +  +   +++   KE   K+
Sbjct: 476 HELDDVDFINKRITVLANEGITTALCALAK---TESHNSQELIARVLNAVCGLKELRGKV 532

Query: 182 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH 241
             +  GV  L     +G+   +R     LA   +    E   S   SL V++ +++ L  
Sbjct: 533 V-QEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ 591

Query: 242 DSSDV-RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI 300
           D + +    + M L +++ S+        + E  V  +   L +    +  AA   + N+
Sbjct: 592 DCTALENFESLMALTNLA-SMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650

Query: 301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360
           V+     +        VK L  L +  D         AL  +  ++   C++ + +    
Sbjct: 651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWL 710

Query: 361 SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 402
            +L +LI +P P+VQ + + ++ N+++      + +F  D +
Sbjct: 711 DILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIM 752

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 70.6 bits (172), Expect = 6e-13
 Identities = 47/305 (15%), Positives = 104/305 (34%), Gaps = 16/305 (5%)

Query: 52  KLLFDAGVLKRLTSLL-GGSLIQRDAS---LESIATIFKNNPEVVSQFVGPDTGRTLSCI 107
            +L + G+   L +L    S   ++     L ++  + +   +VV +            +
Sbjct: 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVK-------AL 541

Query: 108 IEIVKDRFARTRLLASLCLIVI-RNASPCYLQDVGIKTKLINNLLELL--DDPGRVGDEA 164
           + +  +   + +  A+  L  I    +P           +I  LL LL  D       E+
Sbjct: 542 LRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFES 601

Query: 165 SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS 224
             A ++L +  E +++   +  GV K+  +L +  L+  R       L ++    +  + 
Sbjct: 602 LMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTR--AAAQCLCNLVMSEDVIKM 659

Query: 225 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD 284
              +   +K +      +  +  +A    L  ++              + +  L  L+ +
Sbjct: 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719

Query: 285 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344
            S AVQ   +  I N++               ++LL  L +  D T       A + L  
Sbjct: 720 PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779

Query: 345 LAEDK 349
               +
Sbjct: 780 AERYR 784

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 71.9 bits (175), Expect = 2e-13
 Identities = 51/356 (14%), Positives = 111/356 (31%), Gaps = 30/356 (8%)

Query: 10  KYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG 69
           K      + +  L+ LL    +       +    +  +    K+      L  LT  +  
Sbjct: 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEV-- 183

Query: 70  SLIQRDASLESIATIFKNNPEVVSQFVGPDTG--RTLSCIIEIVKDRFARTRLLASLCLI 127
            +I             K         +    G  R +S      + +      L    + 
Sbjct: 184 -IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF 242

Query: 128 VIRNASPCYLQD-------VGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180
           +++        D       V +   L   +   +    R  + A    ++         +
Sbjct: 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYE 302

Query: 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS----KLECCRSRCLSLQVLKLVV 236
           L F+   V    + L++    P   E    A+ ++C+         RS     + L  + 
Sbjct: 303 LLFQPEVVRIYISLLKESK-TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361

Query: 237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT--------STA 288
           D L ++   V  AA   LR+++   +N      + +  +  LV+ L           S  
Sbjct: 362 DLLTNEHERVVKAASGALRNLAVDARNKEL---IGKHAIPNLVKNLPGGQQNSSWNFSED 418

Query: 289 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN--ALRALRNL 342
             ++ L  I+ ++ +            G++ LV ++KS + + +    A   L+ +
Sbjct: 419 TVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 69.2 bits (168), Expect = 1e-12
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 1/133 (0%)

Query: 254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR 313
           L S+    K         +  +  ++ +L     AV+  A   + ++       ++   +
Sbjct: 29  LASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRK 88

Query: 314 LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEP 372
           L G+ +LV L       + L A  AL+N+ F  +   K  I        L  L+    + 
Sbjct: 89  LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM 148

Query: 373 SVQEQALALVRNL 385
            + E     + NL
Sbjct: 149 DLTEVITGTLWNL 161

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 64.2 bits (155), Expect = 6e-11
 Identities = 49/324 (15%), Positives = 102/324 (31%), Gaps = 25/324 (7%)

Query: 211 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFM 270
            L  +C + +  ++    L+ + ++V  L H   +V   AC  L+++S      +  +  
Sbjct: 71  YLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK 130

Query: 271 NETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS 329
           N   V  LVRLL       +     G + N+    + +    I    +  L        S
Sbjct: 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME--IVDHALHALTDEVIIPHS 188

Query: 330 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQE--QALALVRNLVD 387
                     +      E        +  TA  L ++  +   + ++  +   LV  L+ 
Sbjct: 189 GWEREPNEDCKPRHIEWES------VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF 242

Query: 388 GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI--------QGMYVLGNVATGKESHKE 439
                +    ++  ++ + V     ++ +   EI            V  N  T      E
Sbjct: 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYE 302

Query: 440 AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI 499
            +    ++R        I    +S    +  A+  A+ NL              L     
Sbjct: 303 LLFQPEVVRI------YISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA 356

Query: 500 VSHVKNMVNDPCLDVKLRVKTALE 523
           +S + +++ +    V      AL 
Sbjct: 357 LSAIADLLTNEHERVVKAASGALR 380

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 60/396 (15%), Positives = 123/396 (31%), Gaps = 52/396 (13%)

Query: 5   SKMAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQK-LLFDAGVLKRL 63
            K  P     ++  +  ++++L    + V    A+ + H C  + + K  +     +  L
Sbjct: 36  RKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVL 95

Query: 64  TSLL--GGSLIQRDAS--LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTR 119
             LL      +   A   L++I+  F  + +        D    L  ++   +D      
Sbjct: 96  VGLLDHPKKEVHLGACGALKNIS--FGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEV 153

Query: 120 LLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQ 179
           +        + N S      + I    ++ L + +  P   G E            E   
Sbjct: 154 ITG-----TLWNLSSHDSIKMEIVDHALHALTDEVIIP-HSGWEREPNEDCKPRHIEWES 207

Query: 180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL 239
            L      +  + +   +     R  +G++ AL                + +++  +   
Sbjct: 208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDAL----------------IFIVQAEIGQK 251

Query: 240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 299
             DS  V +  C+        ++NLS             V      +   Q AA    +N
Sbjct: 252 DSDSKLVENCVCL--------LRNLSYQ-----------VHREIPQAERYQEAAPNVANN 292

Query: 300 IVVDFTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDK---CKEEIF 355
                        +   V++ + L  +S    I   +  A++NL           +  + 
Sbjct: 293 TGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR 352

Query: 356 MELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 391
            E   S +A L+ +    V + A   +RNL     N
Sbjct: 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARN 388

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 69.9 bits (170), Expect = 7e-13
 Identities = 36/217 (16%), Positives = 69/217 (31%), Gaps = 19/217 (8%)

Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 336
             V+ L       Q      I +      + +    +LGG+  LV L +S +  ++  A 
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 337 RALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS---- 392
            ALRNL+F +     E          ++ L       +Q+Q   L+ NL           
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 393 -------VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQL 445
                   + +        D      R     E+       L N+++     +       
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ------- 178

Query: 446 LLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS 482
            +R  +     ++ ++Q+  +  R     +V N  C 
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDK-SVENCMCV 214

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 62.5 bits (151), Expect = 1e-10
 Identities = 53/338 (15%), Positives = 100/338 (29%), Gaps = 31/338 (9%)

Query: 211 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS-RSIKNLSAGSF 269
            +   C + E  + +   L  +  +VD L   + +V+ AA   LR++  RS  N      
Sbjct: 25  YIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE--T 82

Query: 270 MNETIVIPLVRLLDDTSTA-VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL----- 323
             +  +   V LL  T  A +Q    G + N+      +    +    + +L        
Sbjct: 83  RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE--LIADALPVLADRVIIPF 140

Query: 324 -----------SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP 372
                       + +D  +  NA   LRNL      +     +  L  SL+A +      
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYV--QNCV 198

Query: 373 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI-----QGMYVL 427
           +        V N +    N    + AE       +    R A   +        +   ++
Sbjct: 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMM 258

Query: 428 GNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL-RTAAVWAVLNLT-CSSSP 485
            N        +E           + A    +  +  +       A   A+ NLT      
Sbjct: 259 NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318

Query: 486 GSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 523
            S    +       +  +  ++     DV     + L 
Sbjct: 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 61.8 bits (149), Expect = 2e-10
 Identities = 52/424 (12%), Positives = 127/424 (29%), Gaps = 44/424 (10%)

Query: 18  NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQK-LLFDAGVLKRLTSLLG-GSLIQRD 75
            +   +  L+++ E    +GA  I H+C      K  ++  G + +L  LL   +   + 
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 76  ASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 135
           A+  ++  +   +    ++            +  + +   A  +   +  L    N S  
Sbjct: 63  AAAGALRNLVFRSTT--NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLL---WNLSST 117

Query: 136 YLQDVGIKTKLINNLLELLDDPGRVGDE-----------------ASFAFSSLIAEKEDM 178
                 +    +  L + +  P     +                 A+    +L +     
Sbjct: 118 DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR 177

Query: 179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA 238
           Q +      +D L  ++Q      R  +  +     +   L       +  +  +L  +A
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237

Query: 239 LAHDSSDVRSAACMCLRSVSRSIKNLSA-----------GSFMNETIVIPLVRLLDDTST 287
               +    +           +                 G   +   +   + L+  +  
Sbjct: 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297

Query: 288 -AVQVAALGAISNIVVD-----FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 341
            A   A  GA+ N+            +   ++  G+  + +L +S +S +  +    L N
Sbjct: 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSN 357

Query: 342 LIFLAEDKCK--EEIFMELTASLL-ASLICDPEPSVQEQALALVRNLVDGRINSVEYIFA 398
           +            ++F E+T  L   +        +   A   VRNL+  +    +  F+
Sbjct: 358 MSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS 417

Query: 399 EDGI 402
              +
Sbjct: 418 SSML 421

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 10/140 (7%)

Query: 210 LALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF 269
           L  +         +   L  + L  +   L   +SDV  +    L ++SR          
Sbjct: 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV--- 367

Query: 270 MNETIVIPLVRLLDDT------STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 323
           M   +   + RLL         S  +  +A   + N++         +     +  ++ L
Sbjct: 368 MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL 427

Query: 324 SKSMDS-TIRLNALRALRNL 342
            +S  S      A   L ++
Sbjct: 428 CRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 32/175 (18%), Positives = 67/175 (38%), Gaps = 10/175 (5%)

Query: 317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQE 376
           +   VQ   S D   +      +++  F  ++  K++++       L  L+  P  +VQ+
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 377 QALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES 436
            A   +RNLV     +      ++GI        LR    AEI+ Q   +L N+++  E 
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIR--EAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 437 HK-------EAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS 484
            +         + D++++              +  D  +   A   + NL+ + +
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA 175

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 50.6 bits (120), Expect = 9e-07
 Identities = 46/365 (12%), Positives = 109/365 (29%), Gaps = 40/365 (10%)

Query: 150 LLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF-EG 207
            ++ L     +     ++       + E  ++  +++ G+ KL + L+  + + ++   G
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66

Query: 208 IL--LALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 265
            L  L      +KLE  R       + + V       +++++      L ++S + +   
Sbjct: 67  ALRNLVFRSTTNKLETRRQNG----IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 266 AGSFMNETIVIPLVRLL----------------DDTSTAVQVAALGAISNIVVDFTTRRS 309
               +    +  L   +                +     V   A G + N+      R++
Sbjct: 123 E---LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 310 TFIRLGGVKLLVQL------SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 363
                G +  L+        +   D     N +  L NL +  + +           +  
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239

Query: 364 ASLI-----CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE 418
           A        C    S +         L +   N     +      +      +  + K  
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299

Query: 419 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN 478
                   L N+   K      +   + L+   K    I + LQS +S +  +    + N
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKE--KGLPQIARLLQSGNSDVVRSGASLLSN 357

Query: 479 LTCSS 483
           ++   
Sbjct: 358 MSRHP 362

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 27/187 (14%), Positives = 61/187 (32%), Gaps = 12/187 (6%)

Query: 209 LLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 268
              L +  +  +       S  +   +             A    L++++ S   +S+G 
Sbjct: 263 DCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322

Query: 269 ----FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL- 323
                + E  +  + RLL   ++ V  +    +SN+       R   +       + +L 
Sbjct: 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV--MGNQVFPEVTRLL 380

Query: 324 -----SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA 378
                + S    I  +A   +RNL+       K+     +  +++        P   E A
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440

Query: 379 LALVRNL 385
             L+ ++
Sbjct: 441 RLLLSDM 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 90/587 (15%), Positives = 176/587 (29%), Gaps = 194/587 (33%)

Query: 9   PKYDFLQEENM----EFLLSLLNNESENVS-----GLGASIISHSCKTSLEQKLLFDAGV 59
            KY+  + +      + LL L    ++NV      G G        KT +   +     V
Sbjct: 127 AKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSG--------KTWVALDVCLSYKV 176

Query: 60  LKRLT------SLLGGSLIQRDASLESIATIF-KNNPEVVSQFVGPDTGRTLSCIIEIVK 112
             ++       +L   +    +  LE +  +  + +P   S+    D    +   I  ++
Sbjct: 177 QCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSR---SDHSSNIKLRIHSIQ 231

Query: 113 DRFARTRLLASL----CLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAF 168
                 RLL S     CL+V+ N     +Q+     K  N                +F  
Sbjct: 232 AEL--RRLLKSKPYENCLLVLLN-----VQN----AKAWN----------------AFNL 264

Query: 169 SS--LI--AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM-CSKL--EC 221
           S   L+    K+    L+        L +H     L P   + +LL   D     L  E 
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISL-DHHSMT-LTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 222 CRSRCLSLQVLKLVVDALAHDSSD----VRSAACMCL-RSVSRSIKNLSAGSF------- 269
                 + + L ++      D        +   C  L   +  S+  L    +       
Sbjct: 323 LT---TNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 270 --MNETIVIP---LVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 323
                +  IP   L  +  D   + V          +VV+   + S         L+ + 
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVM---------VVVNKLHKYS---------LVEKQ 420

Query: 324 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS--LICDPEPSVQEQALAL 381
            K  +STI + ++          E K K E    L  S++    +    +         L
Sbjct: 421 PK--ESTISIPSI--------YLELKVKLENEYALHRSIVDHYNIPKTFDSD------DL 464

Query: 382 VRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAV 441
           +   +D       Y ++        +G  L+     E                   +  +
Sbjct: 465 IPPYLDQ------YFYSH-------IGHHLKNIEHPE-------------------RMTL 492

Query: 442 MDQLLLRAENKAQSCIIKFLQSNDSRLR-TAAVW----AVLNLT----------CSSSPG 486
              + L           +FL+    ++R  +  W    ++LN            C + P 
Sbjct: 493 FRMVFLD---------FRFLE---QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 487 SSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS--FDDS 531
               +  + D  +    +N++     D+   ++ AL   +   F+++
Sbjct: 541 YERLVNAILDF-LPKIEENLICSKYTDL---LRIALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 46/327 (14%), Positives = 96/327 (29%), Gaps = 85/327 (25%)

Query: 13  FLQEENMEFLLSLLNNESEN------------VSGLGASIISHSCKTSLEQKLLFDAGVL 60
              +E    LL  L+   ++            +S +  SI          + +  D    
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD---- 353

Query: 61  KRLTSLLGGSLIQRDASL-----ESIATIFKNN---PEVVSQFVGPDTGRTLSCIIEIVK 112
            +LT+++  SL   + +      + ++ +F  +   P ++   +  D     S ++ +V 
Sbjct: 354 -KLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDV--IKSDVMVVVN 409

Query: 113 DRFARTRLLASLCLIVIRNASP-CYLQDVGIKTKL-INNLLEL----LDDPGRVGDEASF 166
                   L    L+  +       +  + ++ K+ + N   L    +D         +F
Sbjct: 410 K-------LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD---HYNIPKTF 459

Query: 167 AFSSLIAEKEDM---QKLAFEVNGVDKLYNHLQKGSLHPR--RFEGILLALADMCSKLE- 220
               LI    D      +            HL+      R   F  + L    +  K+  
Sbjct: 460 DSDDLIPPYLDQYFYSHIGH----------HLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 221 -----CCRSRCLS-LQVLKL----------VVDALAHDSSD-VRSAACMCLRSVSRSIKN 263
                      L+ LQ LK             + L +   D +       + S    +  
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 264 LSAGSFMNETIVIPLVRLLDDTSTAVQ 290
           +   + M E   I      ++    VQ
Sbjct: 570 I---ALMAEDEAI-----FEEAHKQVQ 588

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 61.2 bits (148), Expect = 4e-10
 Identities = 57/423 (13%), Positives = 135/423 (31%), Gaps = 47/423 (11%)

Query: 104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG-RVGD 162
           +     +  D     RLLA    + I       L    ++  ++  L +  +D   RV  
Sbjct: 205 IPMFSNLASDEQDSVRLLAVEACVNIAQ----LLPQEDLEALVMPTLRQAAEDKSWRVRY 260

Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL-EC 221
             +  F+ L             V     L                    + + C  L   
Sbjct: 261 MVADKFTELQKAVGPEITKTDLVPAFQNLMKDC-----EAEVRAAASHKVKEFCENLSAD 315

Query: 222 CRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL 281
           CR   +  Q+L  + + ++  +  V+SA    +  +S  +          E ++   +  
Sbjct: 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK----DNTIEHLLPLFLAQ 371

Query: 282 LDDTSTAVQVAALGAISNIVVDF-TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 340
           L D    V++  +  +  +       + S  +    +  +V+L++     +RL  +  + 
Sbjct: 372 LKDECPEVRLNIISNLDCVNEVIGIRQLSQSL----LPAIVELAEDAKWRVRLAIIEYMP 427

Query: 341 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAED 400
            L      +   E F E   SL  + + D   +++E A + ++ LV       E+  A  
Sbjct: 428 LLA----GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV--EKFGKEWAHAT- 480

Query: 401 GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 460
             I+  V             +  ++ +  ++  +   ++     +L          +++ 
Sbjct: 481 --IIPKVLAMSG-DPNYLHRMTTLFCINVLS--EVCGQDITTKHML--------PTVLRM 527

Query: 461 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKT 520
                + +R     ++  +                 + +   ++ +  D  +DVK   + 
Sbjct: 528 AGDPVANVRFNVAKSLQKIGPILDN-------STLQSEVKPILEKLTQDQDVDVKYFAQE 580

Query: 521 ALE 523
           AL 
Sbjct: 581 ALT 583

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 58.5 bits (141), Expect = 3e-09
 Identities = 47/363 (12%), Positives = 116/363 (31%), Gaps = 31/363 (8%)

Query: 19  MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-GSLIQRDAS 77
           M  L     ++S  V  + A   +   K    +  +    ++    +L+       R A+
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAA 301

Query: 78  LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYL 137
              +    +N      + V     + L CI E+V D     +   +  ++ +       L
Sbjct: 302 SHKVKEFCENLSADCRENVIMS--QILPCIKELVSDANQHVKSALASVIMGL----SPIL 355

Query: 138 QDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK 197
                   L+   L  L D     +      + +       + +         L   + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKD-----ECPEVRLNIISNLDCVNEVIGIR-QLSQSLLPAIVE 409

Query: 198 G--SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR 255
                  R    I+  +  +  +L          ++  L +  L      +R AA   L+
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDHVYAIREAATSNLK 466

Query: 256 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 315
            +           + + TI+  ++ +  D +   ++  L  I+ +        +T   L 
Sbjct: 467 KLVEKFGK----EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHML- 521

Query: 316 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 375
               +++++    + +R N  ++L+ +  + ++   +         +L  L  D +  V+
Sbjct: 522 --PTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVK----PILEKLTQDQDVDVK 575

Query: 376 EQA 378
             A
Sbjct: 576 YFA 578

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 57.7 bits (139), Expect = 6e-09
 Identities = 59/381 (15%), Positives = 130/381 (34%), Gaps = 35/381 (9%)

Query: 12  DFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSL 71
           D ++ E +    +L ++E ++V  L      +  +      LL    +   +   L  + 
Sbjct: 198 DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ------LLPQEDLEALVMPTLRQAA 251

Query: 72  IQRDASLESIATIFKNNPEVVSQFVGPDTGRT--LSCIIEIVKDRFARTRLLASLCLIVI 129
              D S      +     E+     GP+  +T  +     ++KD  A  R  AS  +   
Sbjct: 252 --EDKSWRVRYMVADKFTELQKAV-GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 308

Query: 130 RNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSL--IAEKEDMQKLAFEVN 186
                   ++  I ++++  + EL+ D    V    +     L  I  K++  +    + 
Sbjct: 309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL- 367

Query: 187 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV 246
                   L+      R    I+  L  +   +     R LS  +L  +V+        V
Sbjct: 368 ----FLAQLKDECPEVR--LNIISNLDCVNEVIG---IRQLSQSLLPAIVELAEDAKWRV 418

Query: 247 RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT 306
           R A    +  ++  +       F +E +    +  L D   A++ AA   +  +V  F  
Sbjct: 419 RLAIIEYMPLLAGQL----GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF-- 472

Query: 307 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL 366
               +     +  ++ +S   +   R+  L  +  L     + C ++I  +     +  +
Sbjct: 473 -GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS----EVCGQDITTKHMLPTVLRM 527

Query: 367 ICDPEPSVQEQALALVRNLVD 387
             DP  +V+      ++ +  
Sbjct: 528 AGDPVANVRFNVAKSLQKIGP 548

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 44/376 (11%), Positives = 105/376 (27%), Gaps = 35/376 (9%)

Query: 104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDE 163
           L  +  +        R  A   L  I +          ++   +  +  L          
Sbjct: 89  LPPLESLATVEETVVRDKAVESLRAISHE----HSPSDLEAHFVPLVKRLAGGDWFTSRT 144

Query: 164 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 223
           ++    S+   +      A        L +        P         L +    LE   
Sbjct: 145 SACGLFSVCYPRVSSAVKAELRQYFRNLCSDD-----TPMVRRAAASKLGEFAKVLE--- 196

Query: 224 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD 283
              +  +++ +  +  + +   VR  A     ++++ +        +   ++  L +  +
Sbjct: 197 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAE 252

Query: 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343
           D S  V+       + +            +   V     L K  ++ +R  A   ++   
Sbjct: 253 DKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309

Query: 344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 403
                 C+E + M      +  L+ D    V+    +++  L          I  +D  I
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP--------ILGKDNTI 361

Query: 404 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 463
              +   L        E++   +       +      +   LL          I++  + 
Sbjct: 362 EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL--------PAIVELAED 413

Query: 464 NDSRLRTAAVWAVLNL 479
              R+R A +  +  L
Sbjct: 414 AKWRVRLAIIEYMPLL 429

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 60.2 bits (145), Expect = 1e-09
 Identities = 71/484 (14%), Positives = 152/484 (31%), Gaps = 78/484 (16%)

Query: 56  DAGVLKRLTSLLGGSL-----IQRDA--SLESIATIFKNNPEVVSQFVGPDTGRTLSCII 108
           D   L+++  LL  S      IQR     LE         P+  +          L  ++
Sbjct: 8   DEQGLQQILQLLKESQSPDTTIQRTVQQKLEQ----LNQYPDFNNY---------LIFVL 54

Query: 109 EIVKDRFARTRLLASLCLIVIRNASPCYLQ--DVGIKTKLINNLLELLDDPGRVGDEASF 166
             +K     TR L+ L L   +N    + Q    G+   + +  L  + D   +      
Sbjct: 55  TKLKSEDEPTRSLSGLIL---KNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVG 111

Query: 167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS----KLECC 222
              + IA K ++Q      + + KL + L     +    EG   AL  +C      L+  
Sbjct: 112 ILITTIASKGELQNWP---DLLPKLCSLLDSEDYNTC--EGAFGALQKICEDSAEILDSD 166

Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL 282
                   ++   +    H S  +RS A  C+     S           ++ +  L  L 
Sbjct: 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALA 224

Query: 283 DDTSTAVQVAALGAISNIV-VDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 341
            D    V+     A+  ++ V           +  V+ ++Q ++  D  + L A      
Sbjct: 225 GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNI--VEYMLQRTQDQDENVALEACEFWLT 282

Query: 342 LIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG 401
           L        ++ I  ++    L  LI      ++   + ++    D    S       D 
Sbjct: 283 L-------AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335

Query: 402 IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL 461
            +       L + +                     +++ ++  +L          + + L
Sbjct: 336 NLRKCSAAALDVLA-------------------NVYRDELLPHIL--------PLLKELL 368

Query: 462 QSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTA 521
             ++  ++ + +  +  +      G    L +     ++ H+   ++D    V+      
Sbjct: 369 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-----LIPHLIQCLSDKKALVRSITCWT 423

Query: 522 LEQF 525
           L ++
Sbjct: 424 LSRY 427

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 50.9 bits (121), Expect = 7e-07
 Identities = 46/378 (12%), Positives = 119/378 (31%), Gaps = 25/378 (6%)

Query: 22  LLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQ-RDASLES 80
            L    + S  +     + ++    +  +  +L     ++ L +L G    + R     +
Sbjct: 179 FLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238

Query: 81  IATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDV 140
           +  + +   +     + P     +  +++  +D+     L A    + +     C    V
Sbjct: 239 LVMLLEVRMD----RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 294

Query: 141 GIKTKLINNLLELL---------------DDPGRVGDEASFAFSSLIAEKEDMQKLAFEV 185
               KLI  L+  +                  G     + +      A   D+    +  
Sbjct: 295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD 354

Query: 186 NGVDKLYNHLQK--GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS 243
             +  +   L++          E  +L L  +           L  +++  ++  L+   
Sbjct: 355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLSDKK 413

Query: 244 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVD 303
           + VRS  C  L   +  + +    +++   ++  L++ + D++  VQ AA  A + +  +
Sbjct: 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKP-LMTELLKRILDSNKRVQEAACSAFATLEEE 472

Query: 304 FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 363
             T    ++    +  LV           L    A+  L         +  ++++    L
Sbjct: 473 ACTELVPYLA-YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 531

Query: 364 ASLICDPEPSVQEQALAL 381
                  +   ++    L
Sbjct: 532 IQKWNMLKDEDKDLFPLL 549

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 56.5 bits (136), Expect = 4e-09
 Identities = 36/230 (15%), Positives = 78/230 (33%), Gaps = 23/230 (10%)

Query: 267 GSFMNETIVIP-LVRLL--DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 323
           GS  +  + +   V +L  D    +   AA   I +     +  R    +L G+  L+QL
Sbjct: 1   GSNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQL 60

Query: 324 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEPSVQEQALALV 382
            K  +  ++     ALRNL+F  ++  K E+        L  ++    +   ++Q   L+
Sbjct: 61  LKVQNEDVQRAVCGALRNLVF-EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLL 119

Query: 383 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY-----------VLGNVA 431
            NL          I      + + +        + +                   L N++
Sbjct: 120 WNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMS 179

Query: 432 TGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481
           +     ++A      +R  +     ++ +++   +  +     A  N  C
Sbjct: 180 SAGADGRKA------MRRCDGLIDSLVHYVRGTIADYQPDDK-ATENCVC 222

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 38/227 (16%)

Query: 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVR 247
           +++  + L+   + P R       +   C +    R R   L+ +  ++  L   + DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 248 SAACMCLRSVSRSIKNLSAGSFMNETIVI------PLVRLLDDT-STAVQVAALGAISNI 300
            A C  LR       NL      N+  V        L+++L  T     +    G + N+
Sbjct: 70  RAVCGALR-------NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122

Query: 301 VVDFTTRRSTFIRLGGVKLLVQL----------------SKSMDSTIRLNALRALRNLIF 344
             +   +    +    +  L +                 +  +D  I  N    LRN+  
Sbjct: 123 SSNDKLKNL--MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180

Query: 345 LAEDKCKEEIFMELTASLLASLI------CDPEPSVQEQALALVRNL 385
              D  K     +     L   +        P+    E  + ++ NL
Sbjct: 181 AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 56.2 bits (135), Expect = 6e-09
 Identities = 32/242 (13%), Positives = 80/242 (33%), Gaps = 35/242 (14%)

Query: 238 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAI 297
           ++  +  D+R A      +    ++ +   +  +E+++  L+ LLDD    V   A+  I
Sbjct: 2   SMEEEEFDIREAL-----ANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISII 56

Query: 298 SNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME 357
             I           ++    KL   L KS    +     +A   +     +  K  I   
Sbjct: 57  MVIAKTREDLYEPMLK----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI--- 109

Query: 358 LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA 417
               +L +     +   +      +  +       +  I  +   +L +  R+ ++ +  
Sbjct: 110 ---PVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTA-- 164

Query: 418 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 477
                 +  +  +      +    + +++              L   D  +R +AV A++
Sbjct: 165 ------LNFIEAMGENSFKYVNPFLPRIINL------------LHDGDEIVRASAVEALV 206

Query: 478 NL 479
           +L
Sbjct: 207 HL 208

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 40.1 bits (93), Expect = 9e-04
 Identities = 37/262 (14%), Positives = 80/262 (30%), Gaps = 43/262 (16%)

Query: 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTA 288
            VLK +++ L  D   V   A   +  ++++ ++L       E ++  L  LL    +  
Sbjct: 32  SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY------EPMLKKLFSLLKKSEAIP 85

Query: 289 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 348
           +      A   +      +    +    + +L    +  D   ++N   AL  +      
Sbjct: 86  LTQEIAKAFGQM-----AKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM 140

Query: 349 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII--LDA 406
                  M        S++       +  AL  +  +  G  +          II  L  
Sbjct: 141 ------LMASIVRDFMSMLSSKNREDKLTALNFIEAM--GENSFKYVNPFLPRIINLLHD 192

Query: 407 VGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS 466
               +R ++        +  L ++AT  +  ++ V+ +L             + L    S
Sbjct: 193 GDEIVRASA--------VEALVHLATLNDKLRKVVIKRL-------------EELNDTSS 231

Query: 467 RLRTAAVWAVLNLTCSSSPGSS 488
            +       +  L       SS
Sbjct: 232 LVNKTVKEGISRLLLLEGHSSS 253

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 49/348 (14%), Positives = 108/348 (31%), Gaps = 26/348 (7%)

Query: 146 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG--SLHPR 203
           ++ NLL LL       ++  +  S        +       + ++ +   +++   + + R
Sbjct: 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWR 384

Query: 204 RFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 263
             E  ++A   +    +  +      Q L  +++ +   S  V+     C+  ++ S+  
Sbjct: 385 NREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE 444

Query: 264 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 323
                     +V   +  L D    V       I N+V        + I      L+  L
Sbjct: 445 SIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGL 503

Query: 324 SKSMDST-----IRLNALRALRNLIFLAEDKCKE--EIFMELTASLLASLICDPEPSVQE 376
             + +        R +A  AL  ++  A D   E            L   +   E  +  
Sbjct: 504 IGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTL 563

Query: 377 QALALVRNLVDGRINSVEYIFAEDG--------IILDAVGRQLRIASKAEIEIQGMYVLG 428
           +    ++ L    +  +  +  +          +++    R L     A IE    Y + 
Sbjct: 564 EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623

Query: 429 NVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
            +A       E  ++             ++K L   DS +   AV  +
Sbjct: 624 ALAASLGKGFEKYLETFS--------PYLLKALNQVDSPVSITAVGFI 663

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 9/163 (5%)

Query: 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 289
           Q+    + AL      + +AA   + ++              E + I +     +    V
Sbjct: 95  QIKTNALTALVSIEPRIANAAAQLIAAI---ADIELPHGAWPELMKIMVDNTGAEQPENV 151

Query: 290 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST-----IRLNALRALRNLIF 344
           + A+L A+  +      +    +      +L+ + +   ST     +RL AL AL + + 
Sbjct: 152 KRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210

Query: 345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 387
             ++  + E        ++       +  VQ  A   +  ++ 
Sbjct: 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 53/422 (12%), Positives = 136/422 (32%), Gaps = 35/422 (8%)

Query: 117 RTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAE-K 175
             ++ ++L L+   + +     ++   +++  N +     P       + A+ SL A  K
Sbjct: 309 DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVK 368

Query: 176 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLV 235
                +    +  + L   ++   +    + G+L+ +A++ +  E               
Sbjct: 369 I---MIRSNESFTEILLTMIKSQKMTHCLY-GLLVIMANLSTLPEEXXXXXXXXXXXXXX 424

Query: 236 VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALG 295
                  +  V +        +  + K +     +   ++  L R + + S   +   + 
Sbjct: 425 XXXXXPAADKVGAEKAAKEDILLFNEKYI-----LRTELISFLKREMHNLSPNCKQQVVR 479

Query: 296 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST---IRLNALRALRNLIF-----LAE 347
            I NI            + G VK++++   +       IR+   RAL  ++      L  
Sbjct: 480 IIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIF 538

Query: 348 DKCKEEIFMELTASLLASLICDPEPSVQE----------QALALVRNLVDGRINSVEYIF 397
            K      +     LL       +  +            +AL  + NL     +  E + 
Sbjct: 539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC 598

Query: 398 AEDGIILDAVGR--QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQS 455
                          L +     ++   + ++ N+ +   +      +    ++      
Sbjct: 599 KHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI 658

Query: 456 CIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK 515
            ++K LQ +D   + A      N+  ++ P  +  L+      ++ +   +  D   D++
Sbjct: 659 -LVKLLQLSDVESQRAVAAIFANIA-TTIPLIAKELLT--KKELIENAIQVFADQIDDIE 714

Query: 516 LR 517
           LR
Sbjct: 715 LR 716

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 20/196 (10%)

Query: 250 ACMCLRSVS----RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT 305
           A + L +++       + +       +     +  L+ D +  +Q + L  ISN++    
Sbjct: 579 ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL 638

Query: 306 TRRSTFIRLGG------VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE----EIF 355
           T  + F  L          +LV+L +  D   +        N+        KE    +  
Sbjct: 639 TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKEL 698

Query: 356 MELTASLLASLICDPEPSVQEQALALVRNLV----DGRINSVEYIFAEDGIILDAVGRQL 411
           +E    + A  I D E  ++++ L L   L     D   N V  +  E+  + DA+   L
Sbjct: 699 IENAIQVFADQIDDIE--LRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSL 756

Query: 412 RIASKAEIEIQGMYVL 427
           +           + V+
Sbjct: 757 KRGDSGPEFSAAIPVI 772

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 42/166 (25%)

Query: 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ 290
            ++ ++ AL  +   VR +A + L            G   +E  V PL++ L D    V+
Sbjct: 82  AVEPLIKALKDEDGWVRQSAAVAL------------GQIGDERAVEPLIKALKDEDWFVR 129

Query: 291 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 350
           +AA  A+  I       R+       V+ L++  K  D  +R +A  AL           
Sbjct: 130 IAAAFALGEI----GDERA-------VEPLIKALKDEDGWVRQSAADAL----------- 167

Query: 351 KEEIFMELTASLLASLICDPEPSVQEQAL-ALVRNLVDGRINSVEY 395
             EI  E   + +  L        ++ A+  L          S  +
Sbjct: 168 -GEIGGERVRAAMEKLAETGTGFARKVAVNYL------ETHKSFNH 206

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 36/155 (23%)

Query: 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 289
           + ++ ++ AL  + + VR AA   L            G   +E  V PL++ L D    V
Sbjct: 50  RAVEPLIKALKDEDAWVRRAAADAL------------GQIGDERAVEPLIKALKDEDGWV 97

Query: 290 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 349
           + +A  A+  I                V+ L++  K  D  +R+ A  AL          
Sbjct: 98  RQSAAVALGQI-------GDE----RAVEPLIKALKDEDWFVRIAAAFALG--------- 137

Query: 350 CKEEIFMELTASLLASLICDPEPSVQEQAL-ALVR 383
              EI  E     L   + D +  V++ A  AL  
Sbjct: 138 ---EIGDERAVEPLIKALKDEDGWVRQSAADALGE 169

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 40/219 (18%), Positives = 74/219 (33%), Gaps = 61/219 (27%)

Query: 147 INNLLELLDDP------------GRVGDEASFAFSSLIA----EKEDMQKLAFEVNG--- 187
           +   ++ L D             G++GDE   A   LI     E   +++ A +  G   
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGDER--AVEPLIKALKDEDAWVRRAAADALGQIG 78

Query: 188 ----VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS 243
               V+ L   L+      R+     +AL  +  +           + ++ ++ AL  + 
Sbjct: 79  DERAVEPLIKALKDEDGWVRQS--AAVALGQIGDE-----------RAVEPLIKALKDED 125

Query: 244 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVD 303
             VR AA   L            G   +E  V PL++ L D    V+ +A  A+  I  +
Sbjct: 126 WFVRIAAAFAL------------GEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGE 173

Query: 304 FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 342
                           + +L+++     R  A+  L   
Sbjct: 174 -----------RVRAAMEKLAETGTGFARKVAVNYLETH 201

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 49/291 (16%), Positives = 88/291 (30%), Gaps = 87/291 (29%)

Query: 240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 299
           A        AA               A    +   V   ++ L D S  V+ AA  A+  
Sbjct: 1   AWSHPQFEKAA---------------APLRADPEKVEMYIKNLQDDSYYVRRAAAYALGK 45

Query: 300 IVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT 359
           I  +             V+ L++  K  D+ +R  A  AL  +     D        E  
Sbjct: 46  IGDE-----------RAVEPLIKALKDEDAWVRRAAADALGQI----GD--------ERA 82

Query: 360 ASLLASLICDPEPSVQEQAL-ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE 418
              L   + D +  V++ A  AL      G+I     +        + + + L+      
Sbjct: 83  VEPLIKALKDEDGWVRQSAAVAL------GQIGDERAV--------EPLIKALK-DEDWF 127

Query: 419 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN 478
           + I   + LG +       + AV               +IK L+  D  +R +A  A   
Sbjct: 128 VRIAAAFALGEIGD-----ERAV-------------EPLIKALKDEDGWVRQSAADA--- 166

Query: 479 LTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529
                       L ++    + + ++ +        +      LE   SF+
Sbjct: 167 ------------LGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 42/165 (25%)

Query: 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 289
           + ++ ++ AL  +   VR +A + L            G   +E  V PL++ L D    V
Sbjct: 76  RAVEPLIKALKDEDGWVRQSAAVAL------------GQIGDERAVEPLIKALKDEDWFV 123

Query: 290 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 349
           ++AA  A+  I       R+       V+ L++  K  D  +R +A  AL          
Sbjct: 124 RIAAAFALGEI----GDERA-------VEPLIKALKDEDGWVRQSAADAL---------- 162

Query: 350 CKEEIFMELTASLLASLICDPEPSVQEQAL-ALVRNLVDGRINSV 393
              EI  E   + +  L        ++ A+  L          S+
Sbjct: 163 --GEIGGERVRAAMEKLAETGTGFARKVAVNYL------ETHKSL 199

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 36/155 (23%)

Query: 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 289
           + ++ ++ AL  + + VR AA   L            G   +E  V PL++ L D    V
Sbjct: 45  RAVEPLIKALKDEDAWVRRAAADAL------------GQIGDERAVEPLIKALKDEDGWV 92

Query: 290 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 349
           + +A  A+  I       R+       V+ L++  K  D  +R+ A  AL          
Sbjct: 93  RQSAAVALGQI----GDERA-------VEPLIKALKDEDWFVRIAAAFALG--------- 132

Query: 350 CKEEIFMELTASLLASLICDPEPSVQEQAL-ALVR 383
              EI  E     L   + D +  V++ A  AL  
Sbjct: 133 ---EIGDERAVEPLIKALKDEDGWVRQSAADALGE 164

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 41/216 (18%), Positives = 73/216 (33%), Gaps = 61/216 (28%)

Query: 150 LLELLDDP------------GRVGDEASFAFSSLIA----EKEDMQKLAFEVNG------ 187
            ++ L D             G++GDE   A   LI     E   +++ A +  G      
Sbjct: 19  YIKNLQDDSYYVRRAAAYALGKIGDER--AVEPLIKALKDEDAWVRRAAADALGQIGDER 76

Query: 188 -VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV 246
            V+ L   L+      R+     +AL  +  +           + ++ ++ AL  +   V
Sbjct: 77  AVEPLIKALKDEDGWVRQS--AAVALGQIGDE-----------RAVEPLIKALKDEDWFV 123

Query: 247 RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT 306
           R AA   L            G   +E  V PL++ L D    V+ +A  A+  I      
Sbjct: 124 RIAAAFAL------------GEIGDERAVEPLIKALKDEDGWVRQSAADALGEI----GG 167

Query: 307 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 342
            R           + +L+++     R  A+  L   
Sbjct: 168 ERV-------RAAMEKLAETGTGFARKVAVNYLETH 196

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 38/236 (16%), Positives = 83/236 (35%), Gaps = 19/236 (8%)

Query: 210 LALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF 269
           LA+  M     C R   ++  + + +   L  +   VR  A +C+  +      ++A   
Sbjct: 105 LAVRTMG----CIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD----INAQMV 156

Query: 270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS 329
            ++  +  L  L+ D++  V   A+ A+S I           +    +  L+        
Sbjct: 157 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTE 216

Query: 330 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389
             ++  L  L N     +D+  + I  E     L+        +V   A+ ++   ++  
Sbjct: 217 WGQIFILDCLSNYNP-KDDREAQSI-CERVTPRLSH----ANSAVVLSAVKVLMKFLELL 270

Query: 390 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQL 445
               +Y      ++L  +   L      E E+Q    L N+    +   E +  ++
Sbjct: 271 PKDSDYY----NMLLKKLAPPLVTLLSGEPEVQ-YVALRNINLIVQKRPEILKQEI 321

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 33/254 (12%), Positives = 74/254 (29%), Gaps = 62/254 (24%)

Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 336
            L RLLDD ++  ++++   +                   V+L ++     +   R    
Sbjct: 27  ELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSDKNYIRRDIGA 75

Query: 337 RALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
             L  +      K  ++    +   L    + D    V+  A           I S    
Sbjct: 76  FILGQI------KICKKCEDNVFNILNNMALNDKSACVRATA-----------IESTAQR 118

Query: 397 FAEDGIILDAVGRQLRIASK---AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKA 453
             ++ I    +  Q +I +      +     + +  +      + +A +  L        
Sbjct: 119 CKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI------NDKATIPLL-------- 164

Query: 454 QSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLD 513
               I  L+  +  +R  A +A+              + K  ++ I      M+ D   +
Sbjct: 165 ----INLLKDPNGDVRNWAAFAI-------------NINKYDNSDIRDCFVEMLQDKNEE 207

Query: 514 VKLRVKTALEQFNS 527
           V++     L     
Sbjct: 208 VRIEAIIGLSYRKD 221

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 26/135 (19%)

Query: 208 ILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG 267
            + + A  C      ++   S ++++         S++VR A    +             
Sbjct: 111 AIESTAQRCK-----KNPIYSPKIVEQSQITAFDKSTNVRRATAFAI------------S 153

Query: 268 SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM 327
              ++  +  L+ LL D +  V+  A  AI+    D +               V++ +  
Sbjct: 154 VINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK 204

Query: 328 DSTIRLNALRALRNL 342
           +  +R+ A+  L   
Sbjct: 205 NEEVRIEAIIGLSYR 219

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 59/389 (15%), Positives = 134/389 (34%), Gaps = 39/389 (10%)

Query: 139 DVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG 198
           D   + ++ N +L+ L         AS   + +   +  + +       + +L  ++   
Sbjct: 84  DANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWP---ELIPQLVANVTNP 140

Query: 199 SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SSDVRSAACMCLRS 256
           +      E  L A+  +C  ++  + +  S ++L  ++  +  +  S++V+ AA   L +
Sbjct: 141 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200

Query: 257 VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 316
                K           I+  +        T V+VAAL  +  I+  +     T++    
Sbjct: 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPAL 260

Query: 317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQE 376
             + ++  KS    + L  +    N+       C EE+ + + AS  A     PE + + 
Sbjct: 261 FAITIEAMKSDIDEVALQGIEFWSNV-------CDEEMDLAIEASEAAEQGRPPEHTSKF 313

Query: 377 QALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES 436
            A   ++ LV               I+   + +Q       +           +      
Sbjct: 314 YAKGALQYLVP--------------ILTQTLTKQDENDDDDDWNPC-KAAGVCLMLLATC 358

Query: 437 HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHD 496
            ++ ++  +L          I + +++ D R R AAV A          G     +K   
Sbjct: 359 CEDDIVPHVL--------PFIKEHIKNPDWRYRDAAVMAF----GCILEGPEPSQLKPLV 406

Query: 497 AGIVSHVKNMVNDPCLDVKLRVKTALEQF 525
              +  +  ++ DP + V+      + + 
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRI 435

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 23/105 (21%)

Query: 236 VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALG 295
           +++L+++   +R AA   +            G+F +E  V PL++LL+D S  V+  A  
Sbjct: 48  LESLSNEDWRIRGAAAWII------------GNFQDERAVEPLIKLLEDDSGFVRSGAAR 95

Query: 296 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 340
           ++  I  +                + +L+++     R  A+  L 
Sbjct: 96  SLEQIGGE-----------RVRAAMEKLAETGTGFARKVAVNYLE 129

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 21/182 (11%), Positives = 63/182 (34%), Gaps = 11/182 (6%)

Query: 206 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-SDVRSAACMCLRSVSRSIKNL 264
           +  L  L  + +      +      ++  +   +  DS   + + A  CL  +++ +   
Sbjct: 33  KESLEVLEKLLTDHPKLENGEYG-ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR 91

Query: 265 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS 324
            +        V  L+    +    V  A   AI  I    +            + +V+  
Sbjct: 92  FSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQ-------QESIVESL 142

Query: 325 KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN 384
            + + +++      +   +   +     +  ++L  + L   + +P+P+V++ +   +  
Sbjct: 143 SNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGT 202

Query: 385 LV 386
           L+
Sbjct: 203 LI 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	533
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.94
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.9
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.86
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.85
3grl_A	651	General vesicular transport factor P115; vesicle t	99.83
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.81
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.81
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.8
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.78
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.77
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.76
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.75
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.75
3grl_A	651	General vesicular transport factor P115; vesicle t	99.74
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.73
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.7
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.7
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.69
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.64
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.64
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.54
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.53
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.53
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.53
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.52
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.52
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.32
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.99
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.95
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.87
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.85
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.83
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.82
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.81
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.8
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.79
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.71
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.71
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.67
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.66
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.64
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.6
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.56
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.56
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.5
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.47
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.47
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.43
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.41
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.41
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.35
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.3
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.28
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.23
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.09
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.02
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.96
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.93
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.93
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.86
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.57
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.48
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.39
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.37
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.25
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.24
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.18
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.17
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.16
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.05
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.92
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.9
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.9
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.84
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.63
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.4
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.26
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	95.23
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.0
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.47
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.47
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.2
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.93
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.48
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.05
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	92.79
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	91.81
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	91.72
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	91.62
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.18
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	89.34
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	89.25
3s4w_B	1323	Protein FACD2, fanconi anemia group D2 protein hom	87.27
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	85.99
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	84.47
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	83.11

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.4e-43  Score=368.60  Aligned_cols=487  Identities=12%  Similarity=0.121  Sum_probs=404.7

Q ss_pred             ccccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhc-CchHHHHHhhc-C-ChHHHHHHHHHHHHHhcCC
Q 009514           12 DFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLG-G-SLIQRDASLESIATIFKNN   88 (533)
Q Consensus        12 ~l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~-g~i~~L~~lL~-~-~~~v~~~al~aL~~l~~~~   88 (533)
                      ..+..|+++.|+.+|+++++.+++.|+.+|.+++...+++..+... |++++|+++|. + ++.++..++.+|.+++.+.
T Consensus        12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~   91 (529)
T 1jdh_A           12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred             hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence            3456799999999999999999999999999999888888777754 89999999996 4 6789999999999998764


Q ss_pred             hhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHH
Q 009514           89 PEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFA  167 (533)
Q Consensus        89 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~  167 (533)
                       +....+..   .++++.++.+++++++.+|..|+.+|.+++...+. .+..+.+.|++|.|++++++ +..++..++.+
T Consensus        92 -~~~~~i~~---~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~  166 (529)
T 1jdh_A           92 -EGLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDC  166 (529)
T ss_dssp             -HHHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred             -hhHHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence             45555543   58999999999999999999999999999987643 35566789999999999985 45677888899


Q ss_pred             HHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHH
Q 009514          168 FSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVR  247 (533)
Q Consensus       168 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~  247 (533)
                      |.+++.++++.+..+.+.|+++.|+++|.+.+ +...++.+..+|.+++. .+..+..+.+.|+++.++++++++++.++
T Consensus       167 L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~  244 (529)
T 1jdh_A          167 LQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLV  244 (529)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHH
T ss_pred             HHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHH
Confidence            99999988888888999999999999998773 56677889999999986 45778889999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-
Q 009514          248 SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-  326 (533)
Q Consensus       248 ~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-  326 (533)
                      ..++++|.+++...+..    ....+++|.|++++.+++++++..|+++|+|++......+..+.+.|+++.|++++.+ 
T Consensus       245 ~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~  320 (529)
T 1jdh_A          245 QNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA  320 (529)
T ss_dssp             HHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc
Confidence            99999999999874322    1345889999999999999999999999999998777788899999999999999975 


Q ss_pred             -CCHHHHHHHHHHHHHhhccCCh--HhHHHHHHhhcHHHHHhhhCCCC-hhHHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 009514          327 -MDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDGI  402 (533)
Q Consensus       327 -~~~~~~~~al~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~  402 (533)
                       .++.++..++++|+|++.+.+.  ..+..+.+.++++.++++|.+++ +.++..++|+|+|++.+.. ....+.+.+  
T Consensus       321 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~--  397 (529)
T 1jdh_A          321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQG--  397 (529)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTT--
T ss_pred             CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcC--
Confidence             3478999999999999875432  25778889999999999999876 6999999999999998654 346666666  


Q ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHH----------------------hccCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 009514          403 ILDAVGRQLRIASKAEIEIQGMYVLGN----------------------VATGKESHKEAVMDQLLLRAENKAQSCIIKF  460 (533)
Q Consensus       403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~----------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~  460 (533)
                      +++.|..+|.+ ++++++..++|+++|                      ++. .++.+..+.+       .++++.++.+
T Consensus       398 ~i~~L~~ll~~-~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~-------~~~v~~l~~l  468 (529)
T 1jdh_A          398 AIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRG-------LNTIPLFVQL  468 (529)
T ss_dssp             HHHHHHHHHHH-HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHH-------TTCHHHHHHG
T ss_pred             CHHHHHHHHHH-HhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhc-------cCCccHHHHH
Confidence            78999888886 667777777776666                      432 2333344443       7899999999


Q ss_pred             hccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          461 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       461 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                      +.+++++++..|+++|.+++.     .++....+.+.|+++.|.+++++++++++++|.++|.+|+
T Consensus       469 l~~~~~~v~~~a~~~l~~l~~-----~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~  529 (529)
T 1jdh_A          469 LYSPIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTT-----SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HcCCchHHHHHHHHHHHHHhc-----CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999984     3567788999999999999999999999999999999884

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=363.02  Aligned_cols=492  Identities=13%  Similarity=0.118  Sum_probs=413.3

Q ss_pred             cccccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhc-CchHHHHHhhcC--ChHHHHHHHHHHHHHhcC
Q 009514           11 YDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLGG--SLIQRDASLESIATIFKN   87 (533)
Q Consensus        11 ~~l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~-g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~   87 (533)
                      +..+..|+++.|+.+|+++++.+++.|+.+|.+++....++..+... |+++.|+++|.+  +..++..|+.+|.+++.+
T Consensus         8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~   87 (644)
T 2z6h_A            8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH   87 (644)
T ss_dssp             ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred             hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence            34567899999999999999999999999999999988888777754 899999999974  678999999999999876


Q ss_pred             ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHH
Q 009514           88 NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASF  166 (533)
Q Consensus        88 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~  166 (533)
                      .. ....+..   .+.++.++.+++++++.+|..|+.+|.+++...+. .+..+.+.|++|.|++++++ +..++..++.
T Consensus        88 ~~-~~~~i~~---~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~  162 (644)
T 2z6h_A           88 RE-GLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTD  162 (644)
T ss_dssp             HH-HHHHHHT---TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred             hh-hHHHHHH---cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch-hHHHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence            44 5455543   58999999999999999999999999999987543 45556788999999999985 4456777788


Q ss_pred             HHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHH
Q 009514          167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV  246 (533)
Q Consensus       167 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v  246 (533)
                      +|.+++..+++.+..+.+.|+++.|+++|.+.+ ....++.++.+|.+++. .+..+..+++.|+++.+++++++++..+
T Consensus       163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~  240 (644)
T 2z6h_A          163 CLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRL  240 (644)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHH
T ss_pred             HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHH
Confidence            999999888888888999999999999998763 46678899999999986 4678889999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514          247 RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS  326 (533)
Q Consensus       247 ~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~  326 (533)
                      +..++++|.++++..+..    ....++++.|++++++++++++..|+++|+|++......+..+.+.|+++.|++++.+
T Consensus       241 ~~~a~~~L~nL~~~~~~~----~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~  316 (644)
T 2z6h_A          241 VQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR  316 (644)
T ss_dssp             HHHHHHHHHHHGGGCTTC----CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhh----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999864321    2335889999999999999999999999999998777788899999999999999986


Q ss_pred             C--CHHHHHHHHHHHHHhhccCCh--HhHHHHHHhhcHHHHHhhhCCCC-hhHHHHHHHHHHHhhcCCcchHHHHHhhcC
Q 009514          327 M--DSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDG  401 (533)
Q Consensus       327 ~--~~~~~~~al~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~  401 (533)
                      .  .+.++..++++|+|++...+.  ..+..+.+.++++.|+++|.+++ +.++..++|+|+|++.+... ...+++.+ 
T Consensus       317 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~-  394 (644)
T 2z6h_A          317 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQG-  394 (644)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTT-
T ss_pred             cCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcC-
Confidence            3  379999999999999864332  24556888899999999999875 79999999999999987543 46677766 


Q ss_pred             chHHHHHHHhccC---------------------CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 009514          402 IILDAVGRQLRIA---------------------SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF  460 (533)
Q Consensus       402 ~~~~~L~~~L~~~---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~  460 (533)
                       +++.|..+|.+.                     .+.+++..++.+|.+++.. +..+..+.+       .++++.|+.+
T Consensus       395 -~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~-------~~~i~~Lv~l  465 (644)
T 2z6h_A          395 -AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRG-------LNTIPLFVQL  465 (644)
T ss_dssp             -HHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS-HHHHHHHHH-------TTCHHHHHHH
T ss_pred             -CHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC-HHHHHHHHh-------CCcHHHHHHH
Confidence             788888887651                     1345667778888888754 344555544       7899999999


Q ss_pred             hccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          461 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       461 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      |.+++.+++..|+++|.+++.     .++....+.+.|+++.|.++++++++++++.|.+||.++.+..
T Consensus       466 L~~~~~~v~~~a~~aL~~l~~-----~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~  529 (644)
T 2z6h_A          466 LYSPIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK  529 (644)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred             HcCCCHHHHHHHHHHHHHHHc-----CHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence            999999999999999999984     3567788999999999999999999999999999999997643

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=3.8e-42  Score=362.86  Aligned_cols=485  Identities=13%  Similarity=0.117  Sum_probs=387.6

Q ss_pred             HHhhhcCCCcchhHHHHHHHHHhhcCchh--HHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccc
Q 009514           22 LLSLLNNESENVSGLGASIISHSCKTSLE--QKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP   98 (533)
Q Consensus        22 L~~lL~~~~~~v~~~a~~~l~~~~~~~~~--~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~   98 (533)
                      +-..+...+.+-.-.|+.++..+...+..  ...+..+|++++++.++.+ +..+++.|++++++++.+ ++.+..+.+ 
T Consensus       252 ~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~-  329 (810)
T 3now_A          252 IKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCE-  329 (810)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHH-
T ss_pred             HHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHH-
Confidence            33444556666667788888887665544  3344588999999999998 668899999999998765 666554443 


Q ss_pred             cCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhH----hhhHHHHHHhcCC---CCchhhhHHHHHHhh
Q 009514           99 DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK----TKLINNLLELLDD---PGRVGDEASFAFSSL  171 (533)
Q Consensus        99 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----~~~i~~L~~ll~~---~~~~~~~a~~~L~~l  171 (533)
                         .+++.+..++++++..+|..|+.+|+++..............    ...++.++++|.+   +.+++..|+++|.++
T Consensus       330 ---~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayL  406 (810)
T 3now_A          330 ---QGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL  406 (810)
T ss_dssp             ---HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHH
T ss_pred             ---cCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence               345899999999999999999999999975321101111222    3457778888873   467899999999999


Q ss_pred             hcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch-----------------------------hh
Q 009514          172 IAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE-----------------------------CC  222 (533)
Q Consensus       172 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-----------------------------~~  222 (533)
                      +.+.+.......+.|++|.|+++|.+.  ++.++..++++|++++...+                             ..
T Consensus       407 S~~~~vk~~lv~d~g~Ip~LV~LL~s~--d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v  484 (810)
T 3now_A          407 TLDAECKEKLIEDKASIHALMDLARGG--NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFI  484 (810)
T ss_dssp             TTSHHHHHHHHHCHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHH
T ss_pred             hCCcHHHHHHHHccchHHHHHHHhCCC--ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHH
Confidence            876655544555689999999999865  47789999999999997432                             12


Q ss_pred             h---HhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009514          223 R---SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN  299 (533)
Q Consensus       223 ~---~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n  299 (533)
                      +   +.+++.|++|.|+++++++++.+|..|+|+|.|++.. +..+.. +.+.|++|+|+.+|+++++..+..|+|+|+|
T Consensus       485 ~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~-Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~n  562 (810)
T 3now_A          485 NKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGK-VVQEGGVKALLRMALEGTEKGKRHATQALAR  562 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHH-HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHH-HHHCCCHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            2   5677899999999999999999999999999999976 444544 8899999999999999999999999999999


Q ss_pred             HhcCCchhHHH--HHHhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHH
Q 009514          300 IVVDFTTRRST--FIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQE  376 (533)
Q Consensus       300 l~~~~~~~~~~--~~~~~~i~~L~~ll~~~~-~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~  376 (533)
                      ++....+....  ....|++++|++++.++. ...+..|+++|.||+.+ +++.++.+++.|+++.|+.++.++++.+++
T Consensus       563 L~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~-~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~  641 (810)
T 3now_A          563 IGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM-NESVRQRIIKEQGVSKIEYYLMEDHLYLTR  641 (810)
T ss_dssp             HHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSCCTTHHH
T ss_pred             HhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHH
Confidence            98643332100  012468999999998653 44567899999999875 357888999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHH
Q 009514          377 QALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSC  456 (533)
Q Consensus       377 ~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (533)
                      .|+++|+|++.+.+ ....+....| .++.|+.++.+ ++.+++..|+|+|+|++.+++...+.+++      ..+++|.
T Consensus       642 ~A~~~L~NLa~~~~-~~~~~v~~~g-~l~~Lv~LL~s-~d~~vq~~Aa~ALanLt~~s~~~~~~ii~------~~g~I~~  712 (810)
T 3now_A          642 AAAQCLCNLVMSED-VIKMFEGNND-RVKFLALLCED-EDEETATACAGALAIITSVSVKCCEKILA------IASWLDI  712 (810)
T ss_dssp             HHHHHHHHHTTSHH-HHHHHHSSSS-HHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHCHHHHHHHHT------STTHHHH
T ss_pred             HHHHHHHHHhCChH-HHHHHHhccC-cHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHH------HcCCHHH
Confidence            99999999998654 4445553223 78999998888 88999999999999999877777888875      2689999


Q ss_pred             HHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC---CCcHHHHHHHHHHHHhhhc
Q 009514          457 IIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP---CLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       457 lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~---~~~v~~~a~~aL~~~~~~~  529 (533)
                      |+.+|.+++.++++.|+|+|.|++.    ++.++...+.+.|++++|.++++++   +..+.+.|..||.++.+++
T Consensus       713 Lv~LL~s~d~~vq~~A~~aL~NL~~----~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          713 LHTLIANPSPAVQHRGIVIILNMIN----AGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHT----TCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHh----CCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999996    4567899999999999999999654   5678889999999998765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.6e-42  Score=364.16  Aligned_cols=446  Identities=14%  Similarity=0.141  Sum_probs=373.4

Q ss_pred             cccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCCh-hhh
Q 009514           15 QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNP-EVV   92 (533)
Q Consensus        15 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~-~~~   92 (533)
                      .+|+++.|+.+++++++.+|+.|+.++.++|.....|..+.+.|+ |+|..++.+ ++.+|..|+.+|+++..... +..
T Consensus       288 ~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~  366 (810)
T 3now_A          288 REGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAA  366 (810)
T ss_dssp             TTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTS
T ss_pred             ccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCcc
Confidence            789999999999999999999999999999999888999999876 999999986 66899999999999974321 111


Q ss_pred             -hhhccccCcccHHHHHHHHhcC--ChhhHHHHHHHHHHhhhcCCCcchhhhh-HhhhHHHHHHhcC-CCCchhhhHHHH
Q 009514           93 -SQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIRNASPCYLQDVGI-KTKLINNLLELLD-DPGRVGDEASFA  167 (533)
Q Consensus        93 -~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~ll~-~~~~~~~~a~~~  167 (533)
                       ..+..-.....++.+.+++.++  +++++..|+++|.+++...+.  +..++ +.|++|.|+++++ ++..++..++++
T Consensus       367 ~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v--k~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~  444 (810)
T 3now_A          367 IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC--KEKLIEDKASIHALMDLARGGNQSCLYGVVTT  444 (810)
T ss_dssp             CCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH--HHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             ccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH--HHHHHHccchHHHHHHHhCCCChHHHHHHHHH
Confidence             1111000012355677888887  899999999999999986532  34444 5799999999998 457889999999


Q ss_pred             HHhhhcCCH-----------------------------HHH---HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHh
Q 009514          168 FSSLIAEKE-----------------------------DMQ---KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM  215 (533)
Q Consensus       168 L~~l~~~~~-----------------------------~~~---~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l  215 (533)
                      |.|++.+.+                             ..+   +.+++.|++|.|+++|.++  ++.+++.|+|+|+++
T Consensus       445 L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~--s~~vqe~Aa~aL~NL  522 (810)
T 3now_A          445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE--SHNSQELIARVLNAV  522 (810)
T ss_dssp             HHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC--CHHHHHHHHHHHHHH
T ss_pred             HHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence            999997541                             233   5678999999999988875  488999999999999


Q ss_pred             hccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhh---hhcCcHHHHHHhhcCC-CHHHHH
Q 009514          216 CSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF---MNETIVIPLVRLLDDT-STAVQV  291 (533)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~---~~~~~i~~Lv~lL~~~-~~~v~~  291 (533)
                      +.+ +++|..+++.|++|+|+.+|.++++..+..|+++|.+++.+... ... +   ...+++|+|+.+|.++ +...+.
T Consensus       523 A~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p-~~~-~~~~~~~~aIppLv~LL~~~~~~l~~~  599 (810)
T 3now_A          523 CGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP-EVS-FSGQRSLDVIRPLLNLLQQDCTALENF  599 (810)
T ss_dssp             HTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHH-TTTHHHHHTHHHHHHTTSTTSCHHHHH
T ss_pred             cCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh-hhh-hcchhhhcHHHHHHHHhCCCCcHHHHH
Confidence            975 56999999999999999999999999999999999999876322 111 1   1246899999999865 555667


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH-hhcHHHHHhhhCCC
Q 009514          292 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM-ELTASLLASLICDP  370 (533)
Q Consensus       292 ~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~-~~~~~~l~~lL~~~  370 (533)
                      .|+++|.||+..++..++.+++.|+++.|+.++.++++.++..|+++++|++.  +++.+..+.+ .+.++.|+.++.++
T Consensus       600 eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~  677 (810)
T 3now_A          600 ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDE  677 (810)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCS
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCC
Confidence            99999999998877888899999999999999999999999999999999987  3456666665 67899999999999


Q ss_pred             ChhHHHHHHHHHHHhhcCCcchHHHHHh-hcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhh
Q 009514          371 EPSVQEQALALVRNLVDGRINSVEYIFA-EDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA  449 (533)
Q Consensus       371 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~  449 (533)
                      +.++|..|+|+|+|++.+++..++.++. .+  .++.|+.+|.+ ++.+++..|+|++.|++.++.++...+.+      
T Consensus       678 d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g--~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~~s~e~~~~l~e------  748 (810)
T 3now_A          678 DEETATACAGALAIITSVSVKCCEKILAIAS--WLDILHTLIAN-PSPAVQHRGIVIILNMINAGEEIAKKLFE------  748 (810)
T ss_dssp             SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTT--HHHHHHHHHTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHT------
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHCC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHH------
Confidence            9999999999999999977778888888 55  78999999988 89999999999999999877777777775      


Q ss_pred             hhhhHHHHHHhhccC---ChhHHHHHHHHHHhhc
Q 009514          450 ENKAQSCIIKFLQSN---DSRLRTAAVWAVLNLT  480 (533)
Q Consensus       450 ~~~~~~~lv~~L~~~---~~~v~~~a~~~L~~l~  480 (533)
                       .|+++.|..+++.+   +.++.+.|..+|.++.
T Consensus       749 -~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll  781 (810)
T 3now_A          749 -TDIMELLSGLGQLPDDTRAKAREVATQCLAAAE  781 (810)
T ss_dssp             -STHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence             89999999999765   6789999999998887

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.3e-40  Score=344.38  Aligned_cols=412  Identities=16%  Similarity=0.188  Sum_probs=359.9

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHHH
Q 009514          102 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ  179 (533)
Q Consensus       102 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~  179 (533)
                      ..++.+++.++++++..|..|+..++.+.....+...+.+++.|++|.|+++|+.  ++.++.+|+++|++++.++++.+
T Consensus        57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            3589999999999999999999999988765555557889999999999999973  45789999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC-----HHHHHHHHHHH
Q 009514          180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-----SDVRSAACMCL  254 (533)
Q Consensus       180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~-----~~v~~~a~~~L  254 (533)
                      +.+++.|++|.|+++|.++  ++.+++.|+++|++++.+++..|..+.+.|+++.++.++...+     ..++..+++++
T Consensus       137 ~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L  214 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL  214 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence            9999999999999999775  4889999999999999988899999999999999999998654     35678899999


Q ss_pred             HHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHH
Q 009514          255 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN  334 (533)
Q Consensus       255 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~  334 (533)
                      .++++........ ....+++|.|++++.+++++++..|+|+|++++.+.....+.+.+.|+++.|+.++.+++..++..
T Consensus       215 ~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  293 (510)
T 3ul1_B          215 SNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP  293 (510)
T ss_dssp             HHHHCCCSSCCCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred             HHHhhcccchhHH-HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence            9999874333322 345688999999999999999999999999999887777778889999999999999999999999


Q ss_pred             HHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC
Q 009514          335 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA  414 (533)
Q Consensus       335 al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~  414 (533)
                      ++++|+|++.+ ++..+..+++.++++.|+.+|.+++.+++..++|+|+|++.++++....+++.+  +++.|..++.+ 
T Consensus       294 al~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g--~i~~Lv~lL~~-  369 (510)
T 3ul1_B          294 ALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG--LVPFLVGVLSK-  369 (510)
T ss_dssp             HHHHHHHHTTS-CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHHHS-
T ss_pred             HHHHHHHhhcC-CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHcC-
Confidence            99999999874 456788899999999999999999999999999999999999888888888887  88999999988 


Q ss_pred             CchhHHHHHHHHHHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCC--CCCCcHHHH
Q 009514          415 SKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS--SSPGSSGRL  491 (533)
Q Consensus       415 ~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~  491 (533)
                      ++..++..|+|+|.|++. ++.+++..+++       .|+++.|+.+|+++|++++..++++|.++...  ..+......
T Consensus       370 ~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-------~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~  442 (510)
T 3ul1_B          370 ADFKTQKEAAWAITNYTSGGTVEQIVYLVH-------CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS  442 (510)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccCCHHHHHHHHH-------CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHH
Confidence            889999999999999997 44555666665       89999999999999999999999999998741  112334445


Q ss_pred             HHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          492 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       492 ~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      ..+.+.|+++.|..|..+++.++.++|...|.+++.
T Consensus       443 ~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          443 IMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  478 (510)
T ss_dssp             HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            678899999999999998999999999999988764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=2.1e-40  Score=358.73  Aligned_cols=489  Identities=13%  Similarity=0.121  Sum_probs=411.3

Q ss_pred             cccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhc-CchHHHHHhhc-C-ChHHHHHHHHHHHHHhcCChhh
Q 009514           15 QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLG-G-SLIQRDASLESIATIFKNNPEV   91 (533)
Q Consensus        15 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~-g~i~~L~~lL~-~-~~~v~~~al~aL~~l~~~~~~~   91 (533)
                      ..|+++.|+.+|+++++.+|+.|+.+|.+++....++..+.+. |+++.|+++|. + +..+|..|+.+|.+++... +.
T Consensus       148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~  226 (780)
T 2z6g_A          148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EG  226 (780)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HH
T ss_pred             HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hh
Confidence            3789999999999999999999999999999888777777754 89999999997 4 6789999999999998764 44


Q ss_pred             hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHh
Q 009514           92 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSS  170 (533)
Q Consensus        92 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~  170 (533)
                      ...+..   .++++.++.+++++++.+|..|+.+|.+++...+. .+..+...|++|.|++++.+ +..++..++.+|.+
T Consensus       227 ~~~i~~---~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~  302 (780)
T 2z6g_A          227 LLAIFK---SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI  302 (780)
T ss_dssp             HHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred             HHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            445543   57899999999999999999999999999987543 34556678999999999985 45678888899999


Q ss_pred             hhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHH
Q 009514          171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAA  250 (533)
Q Consensus       171 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a  250 (533)
                      ++..+++.+..+.+.|+++.|+++|.+.+ +...++.+..+|.+++. .+..+..+++.|+++.|+.++.+.+..++..+
T Consensus       303 La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a  380 (780)
T 2z6g_A          303 LAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC  380 (780)
T ss_dssp             HHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHH
T ss_pred             HhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHH
Confidence            99888888888889999999999988763 45667788999999986 45678889999999999999999999999999


Q ss_pred             HHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-C-C
Q 009514          251 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-M-D  328 (533)
Q Consensus       251 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~-~  328 (533)
                      +++|.+++......    ....++++.|+++|++++++++..|+++|++++......+..+.+.|+++.|++++.+ + .
T Consensus       381 ~~~L~~L~~~~~~~----~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~  456 (780)
T 2z6g_A          381 LWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR  456 (780)
T ss_dssp             HHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccchhh----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCH
Confidence            99999999764321    2346789999999999999999999999999998877788889999999999999975 3 3


Q ss_pred             HHHHHHHHHHHHHhhccCCh--HhHHHHHHhhcHHHHHhhhCCCCh-hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 009514          329 STIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPEP-SVQEQALALVRNLVDGRINSVEYIFAEDGIILD  405 (533)
Q Consensus       329 ~~~~~~al~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~  405 (533)
                      +.++..|+++|+|++.....  ..+..+...++++.|+++|.+++. .++..++|+|+|++.+.. ....+.+.+  +++
T Consensus       457 ~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~~g--~i~  533 (780)
T 2z6g_A          457 EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQG--AIP  533 (780)
T ss_dssp             HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHHHTT--HHH
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHHHCC--CHH
Confidence            48999999999999864332  235678889999999999998775 999999999999997643 345566666  778


Q ss_pred             HHHHHhccC---------------------CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC
Q 009514          406 AVGRQLRIA---------------------SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN  464 (533)
Q Consensus       406 ~L~~~L~~~---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~  464 (533)
                      .|+.+|.+.                     ..++++..++.+|.+++. ++..+..+.+       .++++.|+.+|.++
T Consensus       534 ~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~-------~~~i~~Lv~lL~~~  605 (780)
T 2z6g_A          534 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-DIHNRIVIRG-------LNTIPLFVQLLYSP  605 (780)
T ss_dssp             HHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-SHHHHHHHHH-------TCCHHHHHHGGGCS
T ss_pred             HHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-ChhhHHHHHH-------CCcHHHHHHHHcCC
Confidence            888877641                     124577788888888885 4445555554       79999999999999


Q ss_pred             ChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          465 DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       465 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      ++.++..|+.+|.+++.     ..+....+.+.|+++.|.++++++++++++.|.+||.++.+..+
T Consensus       606 ~~~v~~~a~~aL~~L~~-----~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          606 IENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             CHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHHHhc-----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            99999999999999984     35677889999999999999999999999999999999987543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=8.6e-40  Score=340.23  Aligned_cols=413  Identities=16%  Similarity=0.189  Sum_probs=360.4

Q ss_pred             cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHH
Q 009514          101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDM  178 (533)
Q Consensus       101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~  178 (533)
                      ...++.++..+.++++..+..|+..++.+.........+.+++.|++|.|+++|+  +++.++.+|+++|++++.++++.
T Consensus        75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~  154 (529)
T 3tpo_A           75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ  154 (529)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            3468999999999999999999999998866554445678899999999999997  34678999999999999999998


Q ss_pred             HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC-----HHHHHHHHHH
Q 009514          179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-----SDVRSAACMC  253 (533)
Q Consensus       179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~-----~~v~~~a~~~  253 (533)
                      .+.+++.|++|.|+.+|.++  ++.+++.|+++|++++.+++..+..+.+.|+++.++.+|...+     ..++..++++
T Consensus       155 ~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~  232 (529)
T 3tpo_A          155 TKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT  232 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence            88999999999999988776  4889999999999999988999999999999999999998654     3567889999


Q ss_pred             HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514          254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL  333 (533)
Q Consensus       254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  333 (533)
                      +.++++........ ....+++|.|+.++.+++++++..|+|+|++++.+.....+.+.+.|+++.|+.++.+++..++.
T Consensus       233 L~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  311 (529)
T 3tpo_A          233 LSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT  311 (529)
T ss_dssp             HHHHHCCCTTCCCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred             HHHHHhcccchhhH-HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence            99999874433332 34578899999999999999999999999999988877888888999999999999999999999


Q ss_pred             HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514          334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI  413 (533)
Q Consensus       334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~  413 (533)
                      .++++|+|++.+ ++..+..+++.++++.|+.+|.++++.++..|+|+|+|++.+++.....+++.+  +++.|+.+|.+
T Consensus       312 ~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g--~i~~Lv~lL~~  388 (529)
T 3tpo_A          312 PALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG--LVPFLVGVLSK  388 (529)
T ss_dssp             HHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--HHHHHHHHHHS
T ss_pred             HHHHHHHHHHcc-chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC--cHHHHHHHhcC
Confidence            999999999874 456788899999999999999999999999999999999999888888888877  88999999988


Q ss_pred             CCchhHHHHHHHHHHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCC--CCCCcHHH
Q 009514          414 ASKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS--SSPGSSGR  490 (533)
Q Consensus       414 ~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~  490 (533)
                       ++.+++..|+|+|+|++. ++.++...+++       .|+++.|+.+|+++|++++..++++|.++...  ..+.....
T Consensus       389 -~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~-------~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~  460 (529)
T 3tpo_A          389 -ADFKTQKAAAWAITNYTSGGTVEQIVYLVH-------CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL  460 (529)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHH
Confidence             889999999999999987 45555666665       89999999999999999999999999998731  11233444


Q ss_pred             HHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          491 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       491 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      ...+.+.|+++.|..|..+++.++.++|...|.+++.
T Consensus       461 ~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          461 SIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             HHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            5667899999999999999999999999999988754

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=5.6e-38  Score=327.56  Aligned_cols=413  Identities=16%  Similarity=0.182  Sum_probs=360.4

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC--CchhhhHHHHHHhhhcCCHHHH
Q 009514          102 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP--GRVGDEASFAFSSLIAEKEDMQ  179 (533)
Q Consensus       102 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~a~~~L~~l~~~~~~~~  179 (533)
                      ..++.++..++++++.+|..|+..|.++.........+.++..|++|.|+++|.++  +.++..|+++|.+++.++++.+
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            46899999999999999999999999997665433466788899999999999853  6789999999999999989888


Q ss_pred             HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc-CCCCHHHHHHHHHHHHHHh
Q 009514          180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVS  258 (533)
Q Consensus       180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls  258 (533)
                      ..+++.|+++.|+.+|.++  ++.+++.|+++|++++.+++..+..+.+.|+++.|++++ ++.++.++..++++|.+++
T Consensus       154 ~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            8899999999999988875  488999999999999988888889999999999999999 6789999999999999999


Q ss_pred             hccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514          259 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA  338 (533)
Q Consensus       259 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a  338 (533)
                      ...+... . ....++++.|++++.+++++++..|+++|++++.......+.+++.|+++.|+.++.++++.++..|+++
T Consensus       232 ~~~~~~~-~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~  309 (528)
T 4b8j_A          232 RGKPQPS-F-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRT  309 (528)
T ss_dssp             CSSSCCC-H-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             cCCCCCc-H-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHH
Confidence            8743333 2 3568999999999999999999999999999998777777788899999999999999999999999999


Q ss_pred             HHHhhccCChHhHHHHHHhhcHHHHHhhhCCC-ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCch
Q 009514          339 LRNLIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA  417 (533)
Q Consensus       339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~  417 (533)
                      |+|++.+ .+...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++.++++.+..++..+  +++.|..+|.+ .++
T Consensus       310 L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~--~i~~L~~lL~~-~~~  385 (528)
T 4b8j_A          310 VGNIVTG-DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG--IIGPLVNLLQT-AEF  385 (528)
T ss_dssp             HHHHTTS-CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--CHHHHHHHHHH-SCH
T ss_pred             HHHHHcC-CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC--CHHHHHHHHhc-CCH
Confidence            9999874 356777888899999999999998 999999999999999988777777888777  78999999988 789


Q ss_pred             hHHHHHHHHHHHhccC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCC-------CcHH
Q 009514          418 EIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSSG  489 (533)
Q Consensus       418 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~  489 (533)
                      .++..++|+|+|++.+ ++.....+++       .++++.|+.+|.++++.++..++++|.++......       +...
T Consensus       386 ~v~~~a~~aL~nl~~~~~~~~~~~l~~-------~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~  458 (528)
T 4b8j_A          386 DIKKEAAWAISNATSGGSHDQIKYLVS-------EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNV  458 (528)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHH-------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccH
Confidence            9999999999999985 5666666665       78999999999999999999999999999841100       1123


Q ss_pred             HHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          490 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       490 ~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      ....+.+.|+++.|..+..+++++++++|...|.++....
T Consensus       459 ~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          459 FSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE  498 (528)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            5678899999999999999999999999999999987653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.2e-37  Score=323.11  Aligned_cols=414  Identities=15%  Similarity=0.184  Sum_probs=358.8

Q ss_pred             cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHH
Q 009514          101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDM  178 (533)
Q Consensus       101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~  178 (533)
                      ...++.++..++++++.+|..|+..|.++.........+.++..|++|.|+++|.+  ++.++..|+++|.+++.++++.
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            45799999999999999999999999998765422334567788999999999985  4678999999999999998888


Q ss_pred             HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009514          179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS  258 (533)
Q Consensus       179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls  258 (533)
                      +..+++.|+++.|+++|.++  ++.+++.|+++|++++..++..+..+...|+++.|++++.+.++.++..++++|.+++
T Consensus       166 ~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~  243 (530)
T 1wa5_B          166 TKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC  243 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence            88888999999999999875  4889999999999999887888888899999999999999999999999999999999


Q ss_pred             hccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514          259 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA  338 (533)
Q Consensus       259 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a  338 (533)
                      ......... ....++++.|+.++.+++++++..++++|++++...+.....+++.|+++.|+.++.++++.++..++++
T Consensus       244 ~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~  322 (530)
T 1wa5_B          244 RGKKPQPDW-SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA  322 (530)
T ss_dssp             CCSSSCCCH-HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             CCCCCCCcH-HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence            874222223 4668999999999999999999999999999998777777788889999999999999999999999999


Q ss_pred             HHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchh
Q 009514          339 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE  418 (533)
Q Consensus       339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~  418 (533)
                      |++++.+. +...+.+++.++++.++.+|.++++.++..|+|+|++++.++++.+..++..+  +++.|..+|.+ +++.
T Consensus       323 L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~--~l~~L~~lL~~-~~~~  398 (530)
T 1wa5_B          323 VGNIVTGN-DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN--LIPPLVKLLEV-AEYK  398 (530)
T ss_dssp             HHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--CHHHHHHHHHH-SCHH
T ss_pred             HHHHHcCC-HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHhc-CCHH
Confidence            99998743 45677788889999999999999999999999999999988777777778766  78999999987 8899


Q ss_pred             HHHHHHHHHHHhccC-Ch--hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCC-------CcH
Q 009514          419 IEIQGMYVLGNVATG-KE--SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSS  488 (533)
Q Consensus       419 v~~~a~~~L~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~-------~~~  488 (533)
                      ++..++|+|+|++.+ .+  ...+.+++       .++++.|+.++.++++.++..|+++|.++......       ...
T Consensus       399 v~~~a~~aL~~l~~~~~~~~~~~~~l~~-------~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~  471 (530)
T 1wa5_B          399 TKKEACWAISNASSGGLQRPDIIRYLVS-------QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNIN  471 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTTCTHHHHHHHH-------TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence            999999999999874 33  45666665       78999999999999999999999999999852100       112


Q ss_pred             HHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhh
Q 009514          489 GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  528 (533)
Q Consensus       489 ~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~  528 (533)
                      .....+.+.|+++.|..++.+++++++++|.++|.++...
T Consensus       472 ~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          472 ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             HHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            3456788999999999999999999999999999998754

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=7.3e-38  Score=327.02  Aligned_cols=450  Identities=14%  Similarity=0.066  Sum_probs=361.7

Q ss_pred             HHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhc-CChhhHHHHHHHHHHhhh
Q 009514           54 LFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRN  131 (533)
Q Consensus        54 i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~  131 (533)
                      ....|++|+|+.+|.+ ++.+|+.|+.+|.+++.+++.. ..+..  ..+.++.+++++++ +++.++..|+.+|.+++.
T Consensus        13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~--~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~   89 (529)
T 1jdh_A           13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMR--SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH   89 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHh--CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            4568899999999986 7799999999999999765533 33322  24789999998875 489999999999999987


Q ss_pred             cCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHH
Q 009514          132 ASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILL  210 (533)
Q Consensus       132 ~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~  210 (533)
                      ..  ..+..+...|++|.|++++++ ++.++..++++|.+++.+++..++.+.+.|++|.|+++|.++  +++++..++.
T Consensus        90 ~~--~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~  165 (529)
T 1jdh_A           90 HR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTD  165 (529)
T ss_dssp             SH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHH
T ss_pred             Cc--hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHH
Confidence            53  246667888999999999985 567899999999999988766777788899999999999875  4778889999


Q ss_pred             HHHHhhccchhhhHhhhhhchHHHHHHhcCCC-CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHH
Q 009514          211 ALADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV  289 (533)
Q Consensus       211 aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v  289 (533)
                      +|.+++..+++.+..+.+.|+++.++++++++ +...+..++.+|.+++.+ +..+.. +.+.|+++.|+.++.++++++
T Consensus       166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~-~~~~g~~~~L~~ll~~~~~~~  243 (529)
T 1jdh_A          166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA-IVEAGGMQALGLHLTDPSQRL  243 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHH-HHHTTHHHHHHTTTTSSCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHH-HHHCCCHHHHHHHHhCCChHH
Confidence            99999987788889999999999999999865 456777889999999976 344444 788999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC
Q 009514          290 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD  369 (533)
Q Consensus       290 ~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~  369 (533)
                      +..++|+|.|++...+...   ...|+++.|+++++++++.++..++++|++++.+ +++.+..+.+.++++.+++++.+
T Consensus       244 ~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~L~~ll~~  319 (529)
T 1jdh_A          244 VQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLR  319 (529)
T ss_dssp             HHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-CHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHHc
Confidence            9999999999997653321   2247899999999999999999999999999874 46788899999999999999975


Q ss_pred             --CChhHHHHHHHHHHHhhcCCcch---HHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHH
Q 009514          370 --PEPSVQEQALALVRNLVDGRINS---VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ  444 (533)
Q Consensus       370 --~~~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  444 (533)
                        ++++++..++++|+|++.++++.   ...+...+  .++.|.++|.+..++.++..++|+|+|++.+.+ ....+++ 
T Consensus       320 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~--~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~-  395 (529)
T 1jdh_A          320 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY--GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE-  395 (529)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT--CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHH-
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcC--ChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHH-
Confidence              44899999999999999876542   34666666  689999999884446999999999999998655 4556665 


Q ss_pred             hhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCC------------------cHHHHHHHHHCCcHHHHHhh
Q 009514          445 LLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPG------------------SSGRLVKLHDAGIVSHVKNM  506 (533)
Q Consensus       445 ~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~------------------~~~~~~~l~~~g~~~~L~~l  506 (533)
                            .+++|.|+++|+++++++|..|+|+++|.... .++                  ..+....+.+.|+++.|+++
T Consensus       396 ------~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~-~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~l  468 (529)
T 1jdh_A          396 ------QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV-EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL  468 (529)
T ss_dssp             ------TTHHHHHHHHHHHHHHHHC-----------CB-TTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred             ------cCCHHHHHHHHHHHhHHHHHHHhcccCchhhh-ccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHH
Confidence                  79999999999998889999888888872111 111                  23444678999999999999


Q ss_pred             hcCCCCcHHHHHHHHHHHHhh
Q 009514          507 VNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       507 l~~~~~~v~~~a~~aL~~~~~  527 (533)
                      +.++++++++.+.++|.++..
T Consensus       469 l~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          469 LYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTT
T ss_pred             HcCCchHHHHHHHHHHHHHhc
Confidence            999999999999999999863

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.4e-37  Score=321.81  Aligned_cols=408  Identities=15%  Similarity=0.147  Sum_probs=345.7

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchh--HHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLE--QKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVV   92 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~--~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~   92 (533)
                      ..++.|+..++|+++..|..|+..+.++.+...+  ...+++.|++|+|+++|++  ++.+|..|+.+|++++..+++..
T Consensus        57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            3589999999999999999999999987654443  5679999999999999975  46899999999999999998887


Q ss_pred             hhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC------chhhhHHH
Q 009514           93 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG------RVGDEASF  166 (533)
Q Consensus        93 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~~~~a~~  166 (533)
                      ..+.+   .|++|.++.++++++..+|..|+++|.+++..++. .++.+...|+++.|+.++..+.      .+...+++
T Consensus       137 ~~vv~---~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~  212 (510)
T 3ul1_B          137 KAVVD---GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW  212 (510)
T ss_dssp             HHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred             HHHHH---CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence            77754   68999999999999999999999999999987653 5677889999999999998431      24567889


Q ss_pred             HHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHH
Q 009514          167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV  246 (533)
Q Consensus       167 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v  246 (533)
                      ++.+++.+...........+++|.|+++|.+.  +++++..++++|.+++...++....+.+.|+++.|+++|.++++.+
T Consensus       213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v  290 (510)
T 3ul1_B          213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI  290 (510)
T ss_dssp             HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred             HHHHHhhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhh
Confidence            99999876543333334457789999988765  4789999999999999877777777889999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514          247 RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS  326 (533)
Q Consensus       247 ~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~  326 (533)
                      +..++++|++++...+..... +.+.|+++.|+.+|++++++++..|+|+|+|++.+....+..+.+.|+++.|+.++.+
T Consensus       291 ~~~al~aL~nl~~~~~~~~~~-i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~  369 (510)
T 3ul1_B          291 VTPALRAIGNIVTGTDEQTQK-VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK  369 (510)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHH-HHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             hhHHHHHHHHhhcCCHHHHHH-HhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC
Confidence            999999999998765554444 7889999999999999999999999999999999888888899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC-----CcchHHHHHhhcC
Q 009514          327 MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG-----RINSVEYIFAEDG  401 (533)
Q Consensus       327 ~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~~~  401 (533)
                      .+..+|..|+|+|+|++.+.+++....+.+.|+++.|+++|+++|++++..++++|.|+...     ..+....++++.|
T Consensus       370 ~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~g  449 (510)
T 3ul1_B          370 ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECG  449 (510)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcC
Confidence            99999999999999999887777888899999999999999999999999999999999742     2223334454443


Q ss_pred             chHHHHHHHhccCCchhHHHHHHHHHHHhccC
Q 009514          402 IILDAVGRQLRIASKAEIEIQGMYVLGNVATG  433 (533)
Q Consensus       402 ~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~  433 (533)
                       .++.+.. |+++++.+|.+.|..+|-.+...
T Consensus       450 -gl~~ie~-Lq~~~n~~i~~~A~~iie~yf~~  479 (510)
T 3ul1_B          450 -GLDKIEA-LQRHENESVYKASLNLIEKYFSV  479 (510)
T ss_dssp             -HHHHHHH-GGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             -cHHHHHH-HHcCCCHHHHHHHHHHHHHHCCC
Confidence             5677755 45558999999999999887653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=4.1e-37  Score=332.98  Aligned_cols=477  Identities=14%  Similarity=0.080  Sum_probs=380.1

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      ++++.++..|.++++.++..++..+...     ++..+ ..|++|.|+.+|.+ +..+|+.|+.+|++++.+.+.. ..+
T Consensus       115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~-~~i  187 (780)
T 2z6g_A          115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAI  187 (780)
T ss_dssp             -----------CCSCHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHH-HHH
T ss_pred             ccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhH-HHH
Confidence            3689999999999999999888888754     23334 48999999999986 6799999999999999765433 333


Q ss_pred             ccccCcccHHHHHHHHhcC-ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhc
Q 009514           96 VGPDTGRTLSCIIEIVKDR-FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIA  173 (533)
Q Consensus        96 ~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~  173 (533)
                      ..  ..+.++.++..+++. ++.+|..|+.+|.+++....  .+..+...|++|.|+++|++ ++.++..|+++|.+++.
T Consensus       188 ~~--~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~--~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~  263 (780)
T 2z6g_A          188 MR--SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE--GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL  263 (780)
T ss_dssp             TT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             Hh--ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            32  246899999988754 89999999999999887532  35667788999999999985 46789999999999998


Q ss_pred             CCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCH-HHHHHHHH
Q 009514          174 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS-DVRSAACM  252 (533)
Q Consensus       174 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~-~v~~~a~~  252 (533)
                      +.+..++.+.+.|+++.|+++|.+.  ++.++..++.+|..++..+++.+..+.+.|+++.|++++++.++ ..+..++.
T Consensus       264 ~~~~~~~~v~~~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~  341 (780)
T 2z6g_A          264 HQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR  341 (780)
T ss_dssp             HSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CChhhHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            8777777788899999999999875  47788899999999998778888889999999999999997754 56678899


Q ss_pred             HHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHH
Q 009514          253 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR  332 (533)
Q Consensus       253 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~  332 (533)
                      +|.+++.+ +..+.. +.+.|+++.|+.++.+++++++..|+++|.+++......   ....++++.|+++++++++.++
T Consensus       342 aL~~Ls~~-~~~~~~-i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr  416 (780)
T 2z6g_A          342 VLKVLSVC-SSNKPA-IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVV  416 (780)
T ss_dssp             HHHHHHTS-TTHHHH-HHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHhhcC-hHHHHH-HHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHH
Confidence            99999976 333444 788999999999999999999999999999999755331   1224789999999999999999


Q ss_pred             HHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC-CC-hhHHHHHHHHHHHhhcCCcch---HHHHHhhcCchHHHH
Q 009514          333 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PE-PSVQEQALALVRNLVDGRINS---VEYIFAEDGIILDAV  407 (533)
Q Consensus       333 ~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~-~~-~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~~~~~~L  407 (533)
                      ..|+++|.+++.+ +++.+..+.+.++++.|+++|.+ ++ .+++..++++|+|++..+++.   ...+...+  .++.|
T Consensus       417 ~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~--~l~~L  493 (780)
T 2z6g_A          417 TCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY--GLPVV  493 (780)
T ss_dssp             HHHHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC--CHHHH
Confidence            9999999999874 45678889999999999999975 33 489999999999998765542   23555556  68999


Q ss_pred             HHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChh--------------------
Q 009514          408 GRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR--------------------  467 (533)
Q Consensus       408 ~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~--------------------  467 (533)
                      .++|.+...+.++..++|+|+|++.+.+ .+..+.+       .++++.|+++|.+++.+                    
T Consensus       494 ~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~  565 (780)
T 2z6g_A          494 VKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE-------QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM  565 (780)
T ss_dssp             HHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHHH-------TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCH
T ss_pred             HHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHHH-------CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccCh
Confidence            9999884445999999999999998654 4455554       79999999999875544                    


Q ss_pred             --HHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          468 --LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       468 --v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                        ++..++.+|.+++.     .......+.+.|+++.|++++.++++.++..|..+|.++..
T Consensus       566 ~~v~~~a~~aL~~La~-----~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~  622 (780)
T 2z6g_A          566 EEIVEACTGALHILAR-----DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  622 (780)
T ss_dssp             HHHHHHHHHHHHHHTT-----SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc-----ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence              45566666666763     34455678899999999999999999999999999999863

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.4e-36  Score=310.62  Aligned_cols=411  Identities=16%  Similarity=0.181  Sum_probs=350.5

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHh-hhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHHH
Q 009514          103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT-KLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ  179 (533)
Q Consensus       103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~  179 (533)
                      .++.+++.++++++.+|..|+.+|..+............+.. |++|.|++++++  ++.++..++++|.+++.++++..
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            388899999999999999999999997642211123445566 999999999984  45789999999999999888777


Q ss_pred             HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 009514          180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVS  258 (533)
Q Consensus       180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~-~~~~v~~~a~~~L~~ls  258 (533)
                      +.+.+.|+++.|+++|.++  ++.+++.|+++|++++.+++..+..+.+.|+++.+++++++ .++.++..++++|++++
T Consensus       101 ~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~  178 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC  178 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            7788899999999988875  48899999999999999888888888999999999999995 78999999999999999


Q ss_pred             hcc-ccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHH
Q 009514          259 RSI-KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR  337 (533)
Q Consensus       259 ~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~  337 (533)
                      ... +.....  ...+++|.|++++.+++++++..++|+|++++....+....+.+.|+++.|+.++.++++.++..+++
T Consensus       179 ~~~~~~~~~~--~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  256 (450)
T 2jdq_A          179 RGKSPPPEFA--KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR  256 (450)
T ss_dssp             CCSSSCCCGG--GTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CCCCCCCCHH--HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence            764 232222  33789999999999999999999999999999877677778888999999999999999999999999


Q ss_pred             HHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCch
Q 009514          338 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA  417 (533)
Q Consensus       338 aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~  417 (533)
                      +|++++.+. +...+.+.+.++++.+++++.++++.++..++++|++++.++++....+++.+  +++.+...|.+ +++
T Consensus       257 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~~l~~-~~~  332 (450)
T 2jdq_A          257 AVGNIVTGD-DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN--IFPALISILQT-AEF  332 (450)
T ss_dssp             HHHHHTTSC-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHHHH-SCH
T ss_pred             HHHHHhhCC-hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHhc-CCH
Confidence            999998753 45666778889999999999999999999999999999988777777777766  88999999987 789


Q ss_pred             hHHHHHHHHHHHhccC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCC-------CcHH
Q 009514          418 EIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSSG  489 (533)
Q Consensus       418 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~  489 (533)
                      .++..++|+|+|++.+ ++...+.+++       .+++|.|+.+++++++.++..|+++|.+++.....       ....
T Consensus       333 ~v~~~a~~~L~~l~~~~~~~~~~~l~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~  405 (450)
T 2jdq_A          333 RTRKEAAWAITNATSGGSAEQIKYLVE-------LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINP  405 (450)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHH-------HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHH-------CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhH
Confidence            9999999999999975 5556666665       78999999999999999999999999999952100       0112


Q ss_pred             HHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhh
Q 009514          490 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  528 (533)
Q Consensus       490 ~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~  528 (533)
                      ....+.+.|+++.|..++++++.++++.|..+|.++...
T Consensus       406 ~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  444 (450)
T 2jdq_A          406 YCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT  444 (450)
T ss_dssp             HHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            456788899999999999988899999999999998753

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.6e-37  Score=326.01  Aligned_cols=446  Identities=14%  Similarity=0.076  Sum_probs=365.8

Q ss_pred             HHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcC-ChhhHHHHHHHHHHhhh
Q 009514           54 LFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDR-FARTRLLASLCLIVIRN  131 (533)
Q Consensus        54 i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~  131 (533)
                      ....|+++.|+++|.+ ++.+|+.|+.+|++++.+.+.. ..+..  ..+.++.+++.+++. ++.+|..|+.+|.+++.
T Consensus        10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~-~~i~~--~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~   86 (644)
T 2z6h_A           10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMR--SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH   86 (644)
T ss_dssp             --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHH-HHHTT--CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred             hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhH-HHHHh--ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence            4678999999999986 7799999999999999877543 33322  247899999999865 89999999999999887


Q ss_pred             cCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHH
Q 009514          132 ASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILL  210 (533)
Q Consensus       132 ~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~  210 (533)
                      ...  .+..+...|++|.|++++++ ++.++..|+++|.+++.+.+..+..+.+.|+++.|+++|.+.+  ++.+..++.
T Consensus        87 ~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~~~~~a~~  162 (644)
T 2z6h_A           87 HRE--GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTD  162 (644)
T ss_dssp             SHH--HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--HHHHHHHHH
T ss_pred             Chh--hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC--HHHHHHHHH
Confidence            642  45667788999999999985 4678999999999999877666777888999999999998763  677788888


Q ss_pred             HHHHhhccchhhhHhhhhhchHHHHHHhcCCCC-HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHH
Q 009514          211 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV  289 (533)
Q Consensus       211 aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~-~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v  289 (533)
                      +|.+++..+++.+..+.+.|+++.|++++++.+ ..++..++.+|++++.+ +..+.. +.+.|+++.|+.++.+++.++
T Consensus       163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~-l~~~g~l~~L~~ll~~~~~~~  240 (644)
T 2z6h_A          163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA-IVEAGGMQALGLHLTDPSQRL  240 (644)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHH-HHHTTHHHHHHTTTTCSCHHH
T ss_pred             HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHH-HHHCCCHHHHHHHHhcCCHHH
Confidence            999999877788889999999999999998764 67889999999999976 444444 788999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC
Q 009514          290 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD  369 (533)
Q Consensus       290 ~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~  369 (533)
                      +..++++|.|++......   ....++++.|+++++++++.++..++++|.+++.+ +++.+..+.+.++++.|++++.+
T Consensus       241 ~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-~~~~~~~v~~~g~v~~Lv~lL~~  316 (644)
T 2z6h_A          241 VQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLR  316 (644)
T ss_dssp             HHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999754331   12247899999999999999999999999999874 45788899999999999999976


Q ss_pred             C--ChhHHHHHHHHHHHhhcCCcc--hHH-HHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHH
Q 009514          370 P--EPSVQEQALALVRNLVDGRIN--SVE-YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ  444 (533)
Q Consensus       370 ~--~~~v~~~a~~~L~~l~~~~~~--~~~-~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  444 (533)
                      .  .++++..++++|+|++..+++  ..+ .+...+  .++.|.++|.+..++.++..++|+|+|++.+.+ .++.+++ 
T Consensus       317 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~-  392 (644)
T 2z6h_A          317 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY--GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE-  392 (644)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT--HHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHH-
T ss_pred             cCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHcc--ChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHH-
Confidence            3  379999999999999976543  222 355555  689999999884457999999999999998655 4566665 


Q ss_pred             hhHhhhhhhHHHHHHhhccCChhHHH----------------------HHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHH
Q 009514          445 LLLRAENKAQSCIIKFLQSNDSRLRT----------------------AAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSH  502 (533)
Q Consensus       445 ~~~~~~~~~~~~lv~~L~~~~~~v~~----------------------~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~  502 (533)
                            .+++|.|+++|.+++.++|.                      .++.+|.+++.     .......+.+.|+++.
T Consensus       393 ------~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-----~~~~~~~l~~~~~i~~  461 (644)
T 2z6h_A          393 ------QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-----DVHNRIVIRGLNTIPL  461 (644)
T ss_dssp             ------TTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT-----SHHHHHHHHHTTCHHH
T ss_pred             ------cCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-----CHHHHHHHHhCCcHHH
Confidence                  89999999999876555544                      45555555553     2244567889999999


Q ss_pred             HHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          503 VKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       503 L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      |++++.++++++++.|.++|.++..
T Consensus       462 Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          462 FVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999865

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.8e-36  Score=315.27  Aligned_cols=407  Identities=16%  Similarity=0.152  Sum_probs=344.6

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchh--HHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLE--QKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVV   92 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~--~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~   92 (533)
                      ..++.++..+.|+++..|..|+..+.++-....+  ...+++.|++|.|+++|..  ++.+|..|+.+|++++..+++..
T Consensus        76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            4689999999999999999999999886433333  5678999999999999974  57899999999999999888876


Q ss_pred             hhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC------chhhhHHH
Q 009514           93 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG------RVGDEASF  166 (533)
Q Consensus        93 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~~~~a~~  166 (533)
                      ..+..   .|++|.++.+++++++.++..|+++|.+++..++. .++.+...|+++.|+.++..+.      .+...+++
T Consensus       156 ~~vv~---~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~-~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~  231 (529)
T 3tpo_A          156 KAVVD---GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW  231 (529)
T ss_dssp             HHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred             HHHHH---CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence            66654   68999999999999999999999999999987653 5677889999999999998431      24567889


Q ss_pred             HHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHH
Q 009514          167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV  246 (533)
Q Consensus       167 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v  246 (533)
                      ++.+++.+...........+++|.|+++|.+.  +++++..++++|.+++.+.++....+.+.|++|.|+++|.++++.+
T Consensus       232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v  309 (529)
T 3tpo_A          232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI  309 (529)
T ss_dssp             HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred             HHHHHHhcccchhhHHHHhhHHHHHHHHhcCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhH
Confidence            99999876544333344467899999988765  4789999999999999887777778889999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514          247 RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS  326 (533)
Q Consensus       247 ~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~  326 (533)
                      +..++++|++++...+..... +.+.|+++.|+.+|.+++++++..|+|+|+|++.+.......+++.|+++.|+.++.+
T Consensus       310 ~~~a~~aL~nl~~~~~~~~~~-i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~  388 (529)
T 3tpo_A          310 VTPALRAIGNIVTGTDEQTQK-VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK  388 (529)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHH-HHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHccchHHHHH-HhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence            999999999998764544444 7889999999999999999999999999999999888888899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC-----CcchHHHHHhhcC
Q 009514          327 MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG-----RINSVEYIFAEDG  401 (533)
Q Consensus       327 ~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~~~  401 (533)
                      ++..++..|+|+|+|++.+.+++....+.+.|+++.|+++|.++|++++..++++|.|+...     ..+.....+.+.|
T Consensus       389 ~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~g  468 (529)
T 3tpo_A          389 ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECG  468 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCC
Confidence            99999999999999999877777888899999999999999999999999999999998742     2223334444433


Q ss_pred             chHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          402 IILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       402 ~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                       .++.+.. |+++.+.+|.+.|..+|-.+..
T Consensus       469 -gl~~ie~-Lq~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          469 -GLDKIEA-LQRHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             -CHHHHTG-GGGCSSHHHHHHHHHHHHHHC-
T ss_pred             -cHHHHHH-HHcCCCHHHHHHHHHHHHHHCC
Confidence             4677655 4555899999999999987764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=5.4e-35  Score=304.98  Aligned_cols=407  Identities=14%  Similarity=0.117  Sum_probs=344.6

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCc--hhHHHHHhcCchHHHHHhhcC-C-hHHHHHHHHHHHHHhcCChhh
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTS--LEQKLLFDAGVLKRLTSLLGG-S-LIQRDASLESIATIFKNNPEV   91 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~--~~~~~i~~~g~i~~L~~lL~~-~-~~v~~~al~aL~~l~~~~~~~   91 (533)
                      ...++.|+.+|.++++.++..|+..|.++....  .....+.+.|++|.|+++|.+ + +.+|..|+.+|++++..+++.
T Consensus        73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~  152 (528)
T 4b8j_A           73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN  152 (528)
T ss_dssp             --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            356899999999999999999999999985443  457788999999999999986 4 799999999999999988877


Q ss_pred             hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-C-CCchhhhHHHHHH
Q 009514           92 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D-PGRVGDEASFAFS  169 (533)
Q Consensus        92 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~-~~~~~~~a~~~L~  169 (533)
                      ...+..   .++++.++.+++++++.+|..|+.+|.+++...+. .++.+...|++|.|++++. + +..++..++++|.
T Consensus       153 ~~~~~~---~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~  228 (528)
T 4b8j_A          153 TKVVID---HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS  228 (528)
T ss_dssp             HHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHh---CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            666543   58999999999999999999999999999976542 4566778899999999995 3 4678899999999


Q ss_pred             hhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHH
Q 009514          170 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSA  249 (533)
Q Consensus       170 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~  249 (533)
                      +++.+.+.. ......++++.|+++|.+.  ++.++..++++|++++...+.....+.+.|+++.++++|.++++.++..
T Consensus       229 ~L~~~~~~~-~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~  305 (528)
T 4b8j_A          229 NFCRGKPQP-SFEQTRPALPALARLIHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIP  305 (528)
T ss_dssp             HHHCSSSCC-CHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred             HHHcCCCCC-cHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHH
Confidence            999765322 2334578899999988765  4889999999999999877666677888999999999999999999999


Q ss_pred             HHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC
Q 009514          250 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD  328 (533)
Q Consensus       250 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~  328 (533)
                      |+++|++++...+..... +.+.|+++.|+.+|.++ ++.++..|+|+|+|++.+.......+++.|+++.|+.++.+.+
T Consensus       306 a~~~L~nl~~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~  384 (528)
T 4b8j_A          306 ALRTVGNIVTGDDAQTQC-IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE  384 (528)
T ss_dssp             HHHHHHHHTTSCHHHHHH-HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCHHHHHH-HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence            999999999864444444 67899999999999988 9999999999999999877777778889999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc-----------hHHHHH
Q 009514          329 STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN-----------SVEYIF  397 (533)
Q Consensus       329 ~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~-----------~~~~i~  397 (533)
                      +.++..|+|+|+|++...+++....+.+.++++.|+.+|.+++++++..++++|.+++...+.           ....+.
T Consensus       385 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~  464 (528)
T 4b8j_A          385 FDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMID  464 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHH
Confidence            999999999999999876677888889999999999999999999999999999999864322           223333


Q ss_pred             hhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccC
Q 009514          398 AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG  433 (533)
Q Consensus       398 ~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~  433 (533)
                      +.+  .++.+..+..+ ++++++..|.+++.++...
T Consensus       465 ~~~--~~~~l~~L~~~-~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          465 EAE--GLEKIENLQSH-DNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             HTT--HHHHHHHGGGC-SSHHHHHHHHHHHHHHCC-
T ss_pred             HCC--cHHHHHHHHcC-CCHHHHHHHHHHHHHHCCC
Confidence            344  56777665555 8899999999999998864

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=9.7e-35  Score=303.04  Aligned_cols=410  Identities=13%  Similarity=0.123  Sum_probs=344.5

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcC--chhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhh
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKT--SLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEV   91 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~--~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~   91 (533)
                      .+.++.|+..|+++++.++..|+..|.++...  ......+.+.|++|.|+++|.+  ++.+|..|+.+|++++..+++.
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            46799999999999999999999999998654  3445678899999999999986  5789999999999999887776


Q ss_pred             hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHh
Q 009514           92 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSS  170 (533)
Q Consensus        92 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~  170 (533)
                      ...+..   .++++.++.+++++++.+|..|+++|.+++...+. .++.+...|++|.|++++.+ +..++..++++|.+
T Consensus       166 ~~~~~~---~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~  241 (530)
T 1wa5_B          166 TKVVVD---ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD-YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN  241 (530)
T ss_dssp             HHHHHH---TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHH---CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc-chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            555543   57899999999999999999999999999986542 45667788999999999985 45788999999999


Q ss_pred             hhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHH
Q 009514          171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAA  250 (533)
Q Consensus       171 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a  250 (533)
                      ++.+...........++++.|+++|.+.  ++.++..++++|++++...+.....+.+.|+++.++++|.++++.++..|
T Consensus       242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a  319 (530)
T 1wa5_B          242 LCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA  319 (530)
T ss_dssp             HHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHH
Confidence            9966411122344578999999988765  47899999999999998776777778888999999999999999999999


Q ss_pred             HHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHH
Q 009514          251 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST  330 (533)
Q Consensus       251 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  330 (533)
                      +++|++++...+..... +.+.|+++.|+.+|.++++.++..|+|+|+|++.........+++.|+++.|+.++.++++.
T Consensus       320 ~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  398 (530)
T 1wa5_B          320 LRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK  398 (530)
T ss_dssp             HHHHHHHTTSCHHHHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHcCCHHHHHH-HHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence            99999998764444434 67789999999999999999999999999999987777777888899999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCh--HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc-----------hHHHHH
Q 009514          331 IRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN-----------SVEYIF  397 (533)
Q Consensus       331 ~~~~al~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~-----------~~~~i~  397 (533)
                      ++..++|+|++++.+.++  +....+.+.++++.|+.++.+++++++..++++|.+++...+.           ....+.
T Consensus       399 v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~  478 (530)
T 1wa5_B          399 TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIE  478 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHH
Confidence            999999999999986555  6777888999999999999999999999999999999864322           122333


Q ss_pred             hhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCCh
Q 009514          398 AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE  435 (533)
Q Consensus       398 ~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~  435 (533)
                      +.+  .++.|..++.+ +++.+++.+.++|.++....+
T Consensus       479 ~~g--~~~~L~~L~~~-~~~~v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          479 KAG--GMEKIFNCQQN-ENDKIYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             HTT--HHHHHHGGGGC-SCHHHHHHHHHHHHHHSSSCC
T ss_pred             HcC--cHHHHHHHHcC-CCHHHHHHHHHHHHHHCCccc
Confidence            444  57778776555 889999999999999886543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.3e-34  Score=295.94  Aligned_cols=378  Identities=16%  Similarity=0.137  Sum_probs=306.9

Q ss_pred             cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcC-CHHH
Q 009514          101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAE-KEDM  178 (533)
Q Consensus       101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~-~~~~  178 (533)
                      ...++.++.+++++++.+|..|+.+|.+++..++ ..+..++..|+||.|+++|+. +..++..|+++|.+++.+ +++.
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~-~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND-KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence            5689999999999999999999999999997553 356678889999999999984 578999999999999985 6888


Q ss_pred             HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC------------------
Q 009514          179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA------------------  240 (533)
Q Consensus       179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~------------------  240 (533)
                      +..+.+.|++|.|+++|.+. .+..+++.++.+|++|+.+ ++++..+++ +++|.|++++.                  
T Consensus       126 k~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence            89999999999999999875 2467899999999999974 577777775 67999999871                  


Q ss_pred             CCCHHHHHHHHHHHHHHhhccccccchhhhh-cCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCch-------
Q 009514          241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMN-ETIVIPLVRLLDD------TSTAVQVAALGAISNIVVDFTT-------  306 (533)
Q Consensus       241 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~-~~~i~~Lv~lL~~------~~~~v~~~a~~aL~nl~~~~~~-------  306 (533)
                      ..++.++..|+++|+||+...++.+.. +.+ .|+++.|+.++++      .+.+.++.|+++|.||+.....       
T Consensus       203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~-i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~  281 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVSSERSEARRK-LRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER  281 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCHHHHHH-HHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred             cccHHHHHHHHHHHHHHhcCCHHHHHH-HHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence            235799999999999999875555655 665 4667899999863      5678999999999999964210       


Q ss_pred             ------------------hHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCCh---HhHHHHHHhhcHHHHH
Q 009514          307 ------------------RRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAED---KCKEEIFMELTASLLA  364 (533)
Q Consensus       307 ------------------~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~---~~~~~i~~~~~~~~l~  364 (533)
                                        ..+.+.+.++++.|+.+++ +.++.++++|+++|.||+.+..+   ..+..+.++++++.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence                              0112223456788899985 56799999999999999875432   2344556688999999


Q ss_pred             hhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCC-------chhHHHHHHHHHHHhccCChhh
Q 009514          365 SLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS-------KAEIEIQGMYVLGNVATGKESH  437 (533)
Q Consensus       365 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~-------~~~v~~~a~~~L~~l~~~~~~~  437 (533)
                      +||.+++.++++.++++|+||+.+..  ...++..+  .++.|+.+|.+..       +.++...++++|+|++.+++..
T Consensus       362 ~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g--~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~  437 (584)
T 3l6x_A          362 DLLTNEHERVVKAASGALRNLAVDAR--NKELIGKH--AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA  437 (584)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHH--HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhC--CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH
Confidence            99999999999999999999998754  33455655  7899999998732       3578999999999999998888


Q ss_pred             HHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCc
Q 009514          438 KEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI  499 (533)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~  499 (533)
                      ++.+++       .|.+|.|+.+++++  ...+++.|+|+|++++.     ..+....+.+.|.
T Consensus       438 ~~~I~~-------~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~-----~~elr~~~kk~G~  489 (584)
T 3l6x_A          438 AKKLRE-------TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG-----YKELRKPLEKEGW  489 (584)
T ss_dssp             HHHHHH-------TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT-----SHHHHHHHHTTTC
T ss_pred             HHHHHH-------CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc-----CHHHHHHHHHcCC
Confidence            888886       89999999999986  77899999999999984     3444555555553

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=4.6e-34  Score=291.96  Aligned_cols=370  Identities=12%  Similarity=0.120  Sum_probs=305.3

Q ss_pred             CCcccccccchHHHHhhhcCCCcchhHHHHHHHHHhhc-CchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhc
Q 009514            9 PKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCK-TSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFK   86 (533)
Q Consensus         9 ~~~~l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~   86 (533)
                      |++--+..+.++.|+.+|.++++.+|+.|+..|.++|. ++++|..+++.|++|+|+++|.+ +..+|+.|+.+|.+|+.
T Consensus        40 ~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~  119 (584)
T 3l6x_A           40 PPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF  119 (584)
T ss_dssp             CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred             CCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            34455667899999999999999999999999999995 67789999999999999999997 78999999999999998


Q ss_pred             C-ChhhhhhhccccCcccHHHHHHHHhc-CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC---------
Q 009514           87 N-NPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---------  155 (533)
Q Consensus        87 ~-~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~---------  155 (533)
                      . +++.+..+..   .|+|+.++.++++ .+..++..|+.+|++++...  ..+..++ .+++|.|++++.         
T Consensus       120 ~~~~~nk~~I~~---~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~k~~I~-~~alp~Lv~LL~~p~sg~~~~  193 (584)
T 3l6x_A          120 GRDQDNKIAIKN---CDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SIKMEIV-DHALHALTDEVIIPHSGWERE  193 (584)
T ss_dssp             SSCHHHHHHHHH---TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GGHHHHH-HHTHHHHHHHTHHHHHCCC--
T ss_pred             cCCHHHHHHHHH---cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhhHHHH-hccHHHHHHHHhccccccccc
Confidence            5 6777777754   6899999999997 67889999999999999843  3455555 568999999871         


Q ss_pred             ----------CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCc-HHHHHHhhhcC----CCCchhHHHHHHHHHHhhccch
Q 009514          156 ----------DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNG-VDKLYNHLQKG----SLHPRRFEGILLALADMCSKLE  220 (533)
Q Consensus       156 ----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~~L~~~----~~~~~~~~~a~~aL~~l~~~~~  220 (533)
                                ++..++..|+++|.+++.++++.++.+++++| ++.|+.+|.+.    ..+...++.|+++|.+|+...+
T Consensus       194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~  273 (584)
T 3l6x_A          194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH  273 (584)
T ss_dssp             --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHH
T ss_pred             ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccc
Confidence                      12467889999999999999888888888766 57999988742    2345688999999999986421


Q ss_pred             hh-------------------------hHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhhccc----cccchhhh
Q 009514          221 CC-------------------------RSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIK----NLSAGSFM  270 (533)
Q Consensus       221 ~~-------------------------~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~~----~~~~~~~~  270 (533)
                      ..                         ...+...++++.++.+|+ +.++.+++.|+++|.||+.+..    ..+.. +.
T Consensus       274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~-v~  352 (584)
T 3l6x_A          274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA-LR  352 (584)
T ss_dssp             HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH-HT
T ss_pred             ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHH-HH
Confidence            00                         112234467888999996 5689999999999999986521    11222 45


Q ss_pred             hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC--------CHHHHHHHHHHHHHh
Q 009514          271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--------DSTIRLNALRALRNL  342 (533)
Q Consensus       271 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~~~~~~~al~aL~~l  342 (533)
                      +.+++|.|+++|.+++.+++..|+|+|+||+.+.. .+. .+..|+++.|+++|.++        +++++..++++|+|+
T Consensus       353 ~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL  430 (584)
T 3l6x_A          353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDAR-NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV  430 (584)
T ss_dssp             SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS-CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh-HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999997653 443 45789999999999876        467899999999999


Q ss_pred             hccCChHhHHHHHHhhcHHHHHhhhCCC--ChhHHHHHHHHHHHhhcC
Q 009514          343 IFLAEDKCKEEIFMELTASLLASLICDP--EPSVQEQALALVRNLVDG  388 (533)
Q Consensus       343 ~~~~~~~~~~~i~~~~~~~~l~~lL~~~--~~~v~~~a~~~L~~l~~~  388 (533)
                      +.. +++.++.+.+.++++.|+.++.+.  .+.+++.|.++|.++...
T Consensus       431 ~a~-~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          431 IAE-NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             HTT-CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             hcC-CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            864 577899999999999999999876  899999999999999875

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3.4e-35  Score=294.15  Aligned_cols=361  Identities=16%  Similarity=0.145  Sum_probs=283.0

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--C-----------CchhhhHHHHHH
Q 009514          103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--P-----------GRVGDEASFAFS  169 (533)
Q Consensus       103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~-----------~~~~~~a~~~L~  169 (533)
                      .++.++..+.+.++..   ..+.|..+....+  ....+++.|++|.|+++|..  .           +.++.+|+|+|+
T Consensus        33 ~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~--~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~  107 (458)
T 3nmz_A           33 MVYSLLSMLGTHDKDD---MSRTLLAMSSSQD--SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH  107 (458)
T ss_dssp             ------------CCHH---HHHHHHHHHSSTT--HHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHH---HHHHHHHHHcCCc--HHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence            4555666666655552   4445555555332  33557899999999999983  2           368999999999


Q ss_pred             hhhcCCHHHHHHHHHcCcH----------HHHHHhhhcCCCCch-----hHH-------HHHHHHHHhhccchhhhHhhh
Q 009514          170 SLIAEKEDMQKLAFEVNGV----------DKLYNHLQKGSLHPR-----RFE-------GILLALADMCSKLECCRSRCL  227 (533)
Q Consensus       170 ~l~~~~~~~~~~~~~~~~l----------~~L~~~L~~~~~~~~-----~~~-------~a~~aL~~l~~~~~~~~~~~~  227 (533)
                      |++.+.++..+...+.+.+          +.+++++.......+     +++       +|+|+|++++.+ +++|+.+.
T Consensus       108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~  186 (458)
T 3nmz_A          108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMN  186 (458)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence            9998887766666666665          556666655420011     333       899999999764 88999999


Q ss_pred             hhchHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhhccccccchhhh-hcCcHHHHHHhhcCCCHHHHHHHHH
Q 009514          228 SLQVLKLVVDALAH-----------DSSDVRSAACMCLRSVSRSIKNLSAGSFM-NETIVIPLVRLLDDTSTAVQVAALG  295 (533)
Q Consensus       228 ~~~~l~~l~~~L~~-----------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~a~~  295 (533)
                      +.|++++|+.+|..           .++.++..|+++|.|++...+..+.. +. ..|.+|+|+++|++++++++..|+|
T Consensus       187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~-i~~~~GaIp~LV~LL~s~~~~v~~~A~~  265 (458)
T 3nmz_A          187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT-LCSMKGCMRALVAQLKSESEDLQQVIAS  265 (458)
T ss_dssp             HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHH-HHHcCCcHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999941           34679999999999999874433433 43 3566999999999999999999999


Q ss_pred             HHHHHhcC-CchhHHHHHHhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhccCChHhHHHHH-HhhcHHHHHhhhCCCCh
Q 009514          296 AISNIVVD-FTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIF-MELTASLLASLICDPEP  372 (533)
Q Consensus       296 aL~nl~~~-~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~-~~~~~~~l~~lL~~~~~  372 (533)
                      +|+||+.. ...++..+.+.|+++.|+++ +.+.++.+++.++.+|.||+.+. ++.+..+. ..|+++.|+++|.+++.
T Consensus       266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~-~~nk~~I~~~~Gal~~Lv~LL~~~~~  344 (458)
T 3nmz_A          266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-TENKADICAVDGALAFLVGTLTYRSQ  344 (458)
T ss_dssp             HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred             HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHhcCcHHHHHHHhcCCCC
Confidence            99999974 45678899999999999997 45678899999999999998733 35677777 78999999999987654


Q ss_pred             ----hHHHHHHHHHHHhhc---CCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHh
Q 009514          373 ----SVQEQALALVRNLVD---GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQL  445 (533)
Q Consensus       373 ----~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  445 (533)
                          ++++.++|+|+|++.   ++++..+.+.+.|  .++.|+.+|.+ ++.++++.|+|+|.|++.++++.+..+++  
T Consensus       345 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G--~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~--  419 (458)
T 3nmz_A          345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWD--  419 (458)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSCHHHHHHHHH--
T ss_pred             cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc--cHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHH--
Confidence                499999999999997   6777777778777  78999999987 88899999999999999888888888876  


Q ss_pred             hHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          446 LLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       446 ~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                           .|++|.|+++|++++..+++.|+|+|.||+.
T Consensus       420 -----~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          420 -----MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             -----HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             -----CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence                 8999999999999999999999999999996

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=290.73  Aligned_cols=366  Identities=17%  Similarity=0.153  Sum_probs=288.6

Q ss_pred             hHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCC----------CchhHHHHHHHHHHh
Q 009514          146 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL----------HPRRFEGILLALADM  215 (533)
Q Consensus       146 ~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~----------~~~~~~~a~~aL~~l  215 (533)
                      .++.|+..+...+.-  +..+.|..+..+.+ .+..+++.|++|.|+++|.....          +++++..|.|+|.++
T Consensus        33 ~~~~l~~~~~~~~~~--~~~~~ll~~~~~~~-~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni  109 (458)
T 3nmz_A           33 MVYSLLSMLGTHDKD--DMSRTLLAMSSSQD-SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI  109 (458)
T ss_dssp             ------------CCH--HHHHHHHHHHSSTT-HHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHH--HHHHHHHHHHcCCc-HHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence            456666666532211  36666777765544 44667899999999999986431          268999999999999


Q ss_pred             hccchhhhHhhhhhchH----------HHHHHhcCCCC--HH-----HHH-------HHHHHHHHHhhccccccchhhhh
Q 009514          216 CSKLECCRSRCLSLQVL----------KLVVDALAHDS--SD-----VRS-------AACMCLRSVSRSIKNLSAGSFMN  271 (533)
Q Consensus       216 ~~~~~~~~~~~~~~~~l----------~~l~~~L~~~~--~~-----v~~-------~a~~~L~~ls~~~~~~~~~~~~~  271 (533)
                      +...++......+.+++          +.+++++.+..  .+     ++.       +|+++|.|++.+ +..|.. +.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~-i~~  187 (458)
T 3nmz_A          110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHA-MNE  187 (458)
T ss_dssp             HHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHH-HHH
T ss_pred             HccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHH-HHH
Confidence            99877766666666666          66677776542  22     555       899999999887 555655 889


Q ss_pred             cCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcCCchhHHHHHH-hCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514          272 ETIVIPLVRLLDD-----------TSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNALRAL  339 (533)
Q Consensus       272 ~~~i~~Lv~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~al~aL  339 (533)
                      .|++++|+.+|..           .++.++..|+|+|.|++.+....+..+.. .|.++.|++++.+++++++..|+|+|
T Consensus       188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL  267 (458)
T 3nmz_A          188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL  267 (458)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9999999999941           35789999999999999877666666654 45599999999999999999999999


Q ss_pred             HHhhccCChHhHHHHHHhhcHHHHHhhh-CCCChhHHHHHHHHHHHhhcCCcchHHHHH-hhcCchHHHHHHHhccCCch
Q 009514          340 RNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALALVRNLVDGRINSVEYIF-AEDGIILDAVGRQLRIASKA  417 (533)
Q Consensus       340 ~~l~~~~~~~~~~~i~~~~~~~~l~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~~~~~~L~~~L~~~~~~  417 (533)
                      .||+.+.++++|..+.+.|+++.|+++| .+.+..+++.++++|.|++..+++....+. ..|  .++.|+++|.+..+.
T Consensus       268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G--al~~Lv~LL~~~~~~  345 (458)
T 3nmz_A          268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG--ALAFLVGTLTYRSQT  345 (458)
T ss_dssp             HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT--HHHHHHHHTTCCCSS
T ss_pred             HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC--cHHHHHHHhcCCCCc
Confidence            9998765667899999999999999974 667899999999999999984444445555 445  789999999873322


Q ss_pred             ---hHHHHHHHHHHHhcc---CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHH
Q 009514          418 ---EIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRL  491 (533)
Q Consensus       418 ---~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  491 (533)
                         ++++.++|+|.|++.   ++++.++.+++       .|++|.|+.+|++++..++++|+|+|.|++.    ++.+..
T Consensus       346 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-------~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~----~~~~~~  414 (458)
T 3nmz_A          346 NTLAIIESGGGILRNVSSLIATNEDHRQILRE-------NNCLQTLLQHLKSHSLTIVSNACGTLWNLSA----RNPKDQ  414 (458)
T ss_dssp             STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-------TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS----SCHHHH
T ss_pred             chHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-------cccHHHHHHHHcCCChHHHHHHHHHHHHHHc----CCHHHH
Confidence               599999999999996   67778888776       8999999999999999999999999999995    467888


Q ss_pred             HHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          492 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       492 ~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      ..+.+.|++++|+++++++++.+++.|.+||.++....
T Consensus       415 ~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          415 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999998653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=6e-34  Score=291.10  Aligned_cols=406  Identities=16%  Similarity=0.178  Sum_probs=337.5

Q ss_pred             chHHHHHhhcC-ChHHHHHHHHHHHHHhc--CChhhhhhhccccCcccHHHHHHHHhcC-ChhhHHHHHHHHHHhhhcCC
Q 009514           59 VLKRLTSLLGG-SLIQRDASLESIATIFK--NNPEVVSQFVGPDTGRTLSCIIEIVKDR-FARTRLLASLCLIVIRNASP  134 (533)
Q Consensus        59 ~i~~L~~lL~~-~~~v~~~al~aL~~l~~--~~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~  134 (533)
                      .++.+++.+.+ ++.+|..|+.+|..+..  .++.... +..  ..+.++.++.+++++ ++.+|..|+.+|.+++...+
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~-~~~--~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~   97 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDE-VIS--TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS   97 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHH-HHT--STTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHH-HHH--cCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence            37889998876 67899999999999753  3443322 221  127899999999988 89999999999999998653


Q ss_pred             CcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHH
Q 009514          135 CYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALA  213 (533)
Q Consensus       135 ~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~  213 (533)
                      . ....++..|++|.|++++++ ++.++..|+++|.+++.+.+..+..+.+.|+++.|++++.+. .++.++..++++|+
T Consensus        98 ~-~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L~  175 (450)
T 2jdq_A           98 L-QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWALS  175 (450)
T ss_dssp             H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHHH
T ss_pred             H-HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence            3 23446678999999999985 567899999999999999988888888999999999988754 35789999999999


Q ss_pred             Hhhccc-hhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHH
Q 009514          214 DMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVA  292 (533)
Q Consensus       214 ~l~~~~-~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~  292 (533)
                      +++... +.....+. .+++|.++++++++++.++..++++|.+++...+..... +...|+++.|+.++.+++++++..
T Consensus       176 ~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~~  253 (450)
T 2jdq_A          176 NLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQA-VIDAGVCRRLVELLMHNDYKVVSP  253 (450)
T ss_dssp             HHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHH-HHHTTTHHHHHHHTTCSCHHHHHH
T ss_pred             HHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHH-HHHcCcHHHHHHHHCCCchhHHHH
Confidence            999754 33333333 789999999999999999999999999999764333333 567899999999999999999999


Q ss_pred             HHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCCh
Q 009514          293 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP  372 (533)
Q Consensus       293 a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~  372 (533)
                      |+++|++++.+.+...+.+.+.|+++.|+.++.++++.+|..|+++|++++.+ .+...+.+++.++++.+++++.++++
T Consensus       254 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~l~~~~~  332 (450)
T 2jdq_A          254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG-NRAQIQTVIDANIFPALISILQTAEF  332 (450)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence            99999999988777777788889999999999999999999999999999874 35566778888999999999999999


Q ss_pred             hHHHHHHHHHHHhhcC-CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhH----------HHH
Q 009514          373 SVQEQALALVRNLVDG-RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK----------EAV  441 (533)
Q Consensus       373 ~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~----------~~~  441 (533)
                      +++..++++|.+++.+ +++....+++.+  +++.|..++.+ ++++++..++++|.+++...+...          ...
T Consensus       333 ~v~~~a~~~L~~l~~~~~~~~~~~l~~~~--~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~  409 (450)
T 2jdq_A          333 RTRKEAAWAITNATSGGSAEQIKYLVELG--CIKPLCDLLTV-MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCAL  409 (450)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHT--CHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHCC--CHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHH
Confidence            9999999999999975 556677777766  78999999987 789999999999999987433211          122


Q ss_pred             HHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          442 MDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       442 ~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      +.      +.|+++.+..++.+++..+++.|..+|.++-.
T Consensus       410 l~------~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          410 IE------EAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HH------HHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred             HH------HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            22      37888999999999999999999999999874

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=4e-34  Score=291.31  Aligned_cols=362  Identities=13%  Similarity=0.133  Sum_probs=298.4

Q ss_pred             cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHH
Q 009514          103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKL  181 (533)
Q Consensus       103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~  181 (533)
                      .++.++.+++++++.+|..|+.+|.+++..++. .+..+...|++|.|+++|++ ++.++..|+++|.+++.++++.+..
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            689999999999999999999999999876543 45578899999999999984 5678999999999999988999899


Q ss_pred             HHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc--------CC--------CCHH
Q 009514          182 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL--------AH--------DSSD  245 (533)
Q Consensus       182 ~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L--------~~--------~~~~  245 (533)
                      +++.|++|.|+++|... .++++++.++++|++++.+ ++.+..+++ |++|.|+++|        .+        .++.
T Consensus        82 i~~~G~i~~Lv~lL~~~-~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHcCCHHHHHHHHhhC-CCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            99999999999999733 3578999999999999987 678888888 9999999999        32        2456


Q ss_pred             HHHHHHHHHHHHhhccccccchhhhhc-CcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC--------------
Q 009514          246 VRSAACMCLRSVSRSIKNLSAGSFMNE-TIVIPLVRLLDD------TSTAVQVAALGAISNIVVDF--------------  304 (533)
Q Consensus       246 v~~~a~~~L~~ls~~~~~~~~~~~~~~-~~i~~Lv~lL~~------~~~~v~~~a~~aL~nl~~~~--------------  304 (533)
                      ++..|+++|+|++.. +..+.. +.+. |++++|+.+|++      .+.++++.|+++|.|++...              
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~-i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~  236 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQT-MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN  236 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHH-HTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHccC-HHHHHH-HHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence            777999999999987 444544 6776 999999999975      46678899999999987310              


Q ss_pred             ------------------------------------chhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCC
Q 009514          305 ------------------------------------TTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE  347 (533)
Q Consensus       305 ------------------------------------~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~  347 (533)
                                                          +...+.+.+.|+++.|+.++.+ +++.+++.|+|+|.|++.+..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~  316 (457)
T 1xm9_A          237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG  316 (457)
T ss_dssp             C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred             cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcC
Confidence                                                0111234456788999998875 468999999999999997654


Q ss_pred             hH---h-HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCC-----chh
Q 009514          348 DK---C-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS-----KAE  418 (533)
Q Consensus       348 ~~---~-~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~-----~~~  418 (533)
                      +.   . +..+.+.++++.|+++|.+++.+++..|+|+|+|++.+.  ....++..+  .++.|+++|.+..     +++
T Consensus       317 ~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~--~i~~Lv~lL~~~~~~~~~~~~  392 (457)
T 1xm9_A          317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQ--VFPEVTRLLTSHTGNTSNSED  392 (457)
T ss_dssp             SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHH--THHHHHHTTTSCCSCSTTHHH
T ss_pred             cchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHh--hhHHHHHhccCCCCCCCCcHH
Confidence            32   2 233446899999999999999999999999999999753  456666666  6899999998731     246


Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHhhcC
Q 009514          419 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       419 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-~~~v~~~a~~~L~~l~~  481 (533)
                      +...++++|.|+..+++.....+.+       .|+++.|+++++++ +.++++.|+|+|.++..
T Consensus       393 v~~~~l~~l~ni~~~~~~~~~~i~~-------~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          393 ILSSACYTVRNLMASQPQLAKQYFS-------SSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHCC-------HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHH-------cCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence            8889999999999887776666654       89999999999999 89999999999999985

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=4.2e-33  Score=283.81  Aligned_cols=363  Identities=14%  Similarity=0.133  Sum_probs=299.3

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCch-hHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSL-EQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ   94 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~-~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~   94 (533)
                      ..+|.|+.+|+++++.+|+.|+.+|.++|..++ .+..+.+.|++|+|+++|.+ ++.++..|+.+|.+++.++++.+..
T Consensus         2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            468999999999999999999999999996554 47789999999999999997 6789999999999999988888777


Q ss_pred             hccccCcccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--------CC--------
Q 009514           95 FVGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--------DP--------  157 (533)
Q Consensus        95 ~~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--------~~--------  157 (533)
                      +..   .|+++.++++++ ++++.++..|+++|++++...  ..+..+++ |++|.|++++.        ++        
T Consensus        82 i~~---~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~  155 (457)
T 1xm9_A           82 TRR---QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVV  155 (457)
T ss_dssp             HHH---TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS--STHHHHHH-HHHHHHHHHTTHHHHTCC---------CC
T ss_pred             HHH---cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH--HhHHHHHh-ccHHHHHHHHhccccccccCccchhcccc
Confidence            754   689999999999 889999999999999999873  35666777 99999999992        11        


Q ss_pred             -CchhhhHHHHHHhhhcCCHHHHHHHHHc-CcHHHHHHhhhcC----CCCchhHHHHHHHHHHhhccc------------
Q 009514          158 -GRVGDEASFAFSSLIAEKEDMQKLAFEV-NGVDKLYNHLQKG----SLHPRRFEGILLALADMCSKL------------  219 (533)
Q Consensus       158 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~~L~~~----~~~~~~~~~a~~aL~~l~~~~------------  219 (533)
                       ..+...|+++|.+++.+ ++.+..+.+. |+++.|+.+|.+.    ..+....+.++++|.+++...            
T Consensus       156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~  234 (457)
T 1xm9_A          156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE  234 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence             22445899999999987 7777888887 9999999998751    123567889999998886210            


Q ss_pred             --------------------------------------hhhhHhhhhhchHHHHHHhcCC-CCHHHHHHHHHHHHHHhhc
Q 009514          220 --------------------------------------ECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVSRS  260 (533)
Q Consensus       220 --------------------------------------~~~~~~~~~~~~l~~l~~~L~~-~~~~v~~~a~~~L~~ls~~  260 (533)
                                                            +.....+...|+++.++.+|.+ +++.+++.|+++|.|++..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~  314 (457)
T 1xm9_A          235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS  314 (457)
T ss_dssp             HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence                                                  0112235567889999999975 4789999999999999875


Q ss_pred             ccccc----chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC------HH
Q 009514          261 IKNLS----AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD------ST  330 (533)
Q Consensus       261 ~~~~~----~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~  330 (533)
                      .....    +..+.+.|++|.|+++|.+++.+++..|+|+|.|++.+ ...+ ..+..|+++.|++++.+.+      ++
T Consensus       315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~-~~i~~~~i~~Lv~lL~~~~~~~~~~~~  392 (457)
T 1xm9_A          315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLH-RVMGNQVFPEVTRLLTSHTGNTSNSED  392 (457)
T ss_dssp             SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGH-HHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred             cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHH-HHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence            33211    12134689999999999999999999999999999974 4444 4556789999999999764      36


Q ss_pred             HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCC-ChhHHHHHHHHHHHhhcCC
Q 009514          331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~-~~~v~~~a~~~L~~l~~~~  389 (533)
                      +...++++|.|+..+. ++....+.+.|+++.|++++.++ +.+++..|.++|.++....
T Consensus       393 v~~~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          393 ILSSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence            8889999999998754 56788888999999999999999 9999999999999998653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=2.3e-29  Score=244.93  Aligned_cols=266  Identities=18%  Similarity=0.168  Sum_probs=230.2

Q ss_pred             hhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhhccccccchhhh-
Q 009514          203 RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-----------DSSDVRSAACMCLRSVSRSIKNLSAGSFM-  270 (533)
Q Consensus       203 ~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~-----------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~-  270 (533)
                      .....|+++|++++.+ +++|+.+++.|+++.|+.+|..           .++.++..|+++|.+++...+..+.. +. 
T Consensus        47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~-i~~  124 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT-LCS  124 (354)
T ss_dssp             GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH-HHH
Confidence            4567899999999976 7899999999999999999942           24689999999999999874434443 43 


Q ss_pred             hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchhHHHHHHhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhccCCh
Q 009514          271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVD-FTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAED  348 (533)
Q Consensus       271 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~al~aL~~l~~~~~~  348 (533)
                      ..|.+|.|+++|++++++++..|+|+|+||+.. ...++..+.+.|+++.|+++ +++.++.+++.++++|.||+.+. +
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~  203 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-T  203 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-H
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC-h
Confidence            345699999999999999999999999999975 45678899999999999997 56778899999999999998633 4


Q ss_pred             HhHHHHH-HhhcHHHHHhhhCCCCh----hHHHHHHHHHHHhhc---CCcchHHHHHhhcCchHHHHHHHhccCCchhHH
Q 009514          349 KCKEEIF-MELTASLLASLICDPEP----SVQEQALALVRNLVD---GRINSVEYIFAEDGIILDAVGRQLRIASKAEIE  420 (533)
Q Consensus       349 ~~~~~i~-~~~~~~~l~~lL~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~  420 (533)
                      +.|..+. ..|+++.|+++|.+++.    ++++.++++|+|++.   ++++....+.+.+  .++.|+.+|.+ ++.+++
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g--~i~~Lv~lL~~-~~~~v~  280 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKS-HSLTIV  280 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT--HHHHHHHHTTC-SCHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC--CHHHHHHHHcC-CChHHH
Confidence            5677777 78999999999987654    599999999999997   6677777777777  78999999987 888999


Q ss_pred             HHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       421 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      +.|+|+|.|++.++++.++.+++       .|++|.|+++|++++..+++.|+|+|.+|+.
T Consensus       281 ~~A~~aL~nLa~~~~~~~~~i~~-------~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          281 SNACGTLWNLSARNPKDQEALWD-------MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  334 (354)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHH-------TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            99999999999888888888876       8999999999999999999999999999996

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=2.8e-29  Score=244.28  Aligned_cols=272  Identities=19%  Similarity=0.187  Sum_probs=232.0

Q ss_pred             HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 009514          244 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-----------TSTAVQVAALGAISNIVVDFTTRRSTFI  312 (533)
Q Consensus       244 ~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~~~  312 (533)
                      ...+..|+++|.+++.. +..|.. +.+.|++++|+.+|..           .+++++..|+|+|.|++.+....+..+.
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~-i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHA-MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHH-HHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHH-HHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35566899999999988 455655 8899999999999942           2478999999999999987766776665


Q ss_pred             Hh-CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh-hCCCChhHHHHHHHHHHHhhcCCc
Q 009514          313 RL-GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRI  390 (533)
Q Consensus       313 ~~-~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-L~~~~~~v~~~a~~~L~~l~~~~~  390 (533)
                      .. |.+|.|++++.+++++++..|+|+|.||+...++++|..+.+.|+++.|+++ +++++.++++.++++|.|++..++
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            44 5599999999999999999999999999876556789999999999999997 467889999999999999998655


Q ss_pred             chHHHHH-hhcCchHHHHHHHhccCCch---hHHHHHHHHHHHhcc---CChhhHHHHHHHhhHhhhhhhHHHHHHhhcc
Q 009514          391 NSVEYIF-AEDGIILDAVGRQLRIASKA---EIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQSCIIKFLQS  463 (533)
Q Consensus       391 ~~~~~i~-~~~~~~~~~L~~~L~~~~~~---~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~  463 (533)
                      +....+. ..|  .++.|+++|.+..+.   ++++.++++|.|++.   ++++.++.+.+       .|++|.|+++|++
T Consensus       204 ~nk~~i~~~~G--ai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-------~g~i~~Lv~lL~~  274 (354)
T 3nmw_A          204 ENKADICAVDG--ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-------NNCLQTLLQHLKS  274 (354)
T ss_dssp             HHHHHHHHSTT--HHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-------TTHHHHHHHHTTC
T ss_pred             hhhHHHHHhcC--cHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-------cCCHHHHHHHHcC
Confidence            4445555 445  789999999873322   599999999999996   67777877775       8999999999999


Q ss_pred             CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       464 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      ++..++++|+|+|.|++.    ++.+....+.+.|++++|+++++++++.+++.|.+||.++....+
T Consensus       275 ~~~~v~~~A~~aL~nLa~----~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          275 HSLTIVSNACGTLWNLSA----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             SCHHHHHHHHHHHHHHTS----SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             CChHHHHHHHHHHHHHhC----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            999999999999999995    467788999999999999999999999999999999999987643

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=8.3e-26  Score=211.77  Aligned_cols=243  Identities=24%  Similarity=0.335  Sum_probs=222.5

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHH
Q 009514          273 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE  352 (533)
Q Consensus       273 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~  352 (533)
                      +.++.|+++|++++++++..|+++|.+++...+..+..+.+.|+++.|+++++++++.++..++++|.+++.. +++.+.
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHH
Confidence            5789999999999999999999999999988777888999999999999999999999999999999999874 467889


Q ss_pred             HHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          353 EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       353 ~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                      .+.+.++++.+++++++++++++..++++|.+++...++....+.+.+  .++.+.+++.+ +++.++..++++|+|++.
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG--GVEVLVKLLTS-TDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999987777777788777  78999999987 889999999999999998


Q ss_pred             CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCC
Q 009514          433 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL  512 (533)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~  512 (533)
                      +++...+.+++       .|+++.|+.++.++++.++..|+++|.+++.    +.++....+.+.|+++.|+++++++++
T Consensus       158 ~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~~l~~~~~i~~L~~ll~~~~~  226 (252)
T 4hxt_A          158 GPDEAIKAIVD-------AGGVEVLVKLLTSTDSEVQKEAARALANIAS----GPTSAIKAIVDAGGVEVLQKLLTSTDS  226 (252)
T ss_dssp             SCHHHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT----SBHHHHHHHHHTTHHHHHHHGGGCSCH
T ss_pred             CCHHHHHHHHH-------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc----CCHHHHHHHHHCCCHHHHHHHHCCCcH
Confidence            87776677765       7999999999999999999999999999995    567788899999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhhcc
Q 009514          513 DVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       513 ~v~~~a~~aL~~~~~~~~  530 (533)
                      ++++.|.++|.++....+
T Consensus       227 ~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          227 EVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHHHHHHHHHTCB
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999987654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.1e-26  Score=238.23  Aligned_cols=470  Identities=13%  Similarity=0.119  Sum_probs=327.9

Q ss_pred             ccccchHHHHhhhcCC-CcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChhhh
Q 009514           14 LQEENMEFLLSLLNNE-SENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVV   92 (533)
Q Consensus        14 ~~~~~i~~L~~lL~~~-~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~   92 (533)
                      ..+|..+.+.+.+++. +..+.......|...|.+...|.++ ..++++.|.+++++ ..+|..|+-+|..+........
T Consensus       252 l~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~-~~ir~lAavvL~KL~~~~~~~~  329 (778)
T 3opb_A          252 LTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV-EDVQIYSALVLVKTWSFTKLTC  329 (778)
T ss_dssp             STTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS-GGGHHHHHHHHHHHTGGGTCTT
T ss_pred             ccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCCCc
Confidence            3678889999888654 4556677788888999888888888 45677999999876 5788899989988865432210


Q ss_pred             hhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhh-HhhhHHHHHHhcCC--CCchhhhHHHHHH
Q 009514           93 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGI-KTKLINNLLELLDD--PGRVGDEASFAFS  169 (533)
Q Consensus        93 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~ll~~--~~~~~~~a~~~L~  169 (533)
                      ..     .....+.+.+.+.+++...+..|+..|..++....  .++.++ ..++++.|+++++.  +..+...++.++.
T Consensus       330 ~s-----i~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~--VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~  402 (778)
T 3opb_A          330 IN-----LKQLSEIFINAISRRIVPKVEMSVEALAYLSLKAS--VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA  402 (778)
T ss_dssp             CC-----HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH--HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHH
T ss_pred             Cc-----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH--HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            00     01233445566777777779999999999987643  344444 46779999999983  5678899999999


Q ss_pred             hhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHH
Q 009514          170 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSA  249 (533)
Q Consensus       170 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~  249 (533)
                      |+..+.+....   +...+..|-++.+...  |+...... .+..-....+..++.+.+.|++|.|+.+++++++.+|..
T Consensus       403 NLt~~~~~~~~---e~~~l~~Lk~~A~~~~--p~~~~~d~-~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~  476 (778)
T 3opb_A          403 NLSTLPEEXXX---XXXXXXXXXXXXXXXX--PAADKVGA-EKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQ  476 (778)
T ss_dssp             HTTCCCCCCCC---CCC--------------------CCT-HHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHH
T ss_pred             HhcCCCcccch---hhhhhhhhhhhccccC--cccCcccc-cccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHH
Confidence            99876543211   0123344444333211  11000000 011111111224677889999999999999999999999


Q ss_pred             HHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHH---HHHHHHHHHHHHhcCCchhHHHHHH----hCcHHHHHH
Q 009514          250 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA---VQVAALGAISNIVVDFTTRRSTFIR----LGGVKLLVQ  322 (533)
Q Consensus       250 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~---v~~~a~~aL~nl~~~~~~~~~~~~~----~~~i~~L~~  322 (533)
                      ++++|.+++.. +..+.. +.+.|++++|++++.+....   .+..|+++|.++.....+..  ++.    .|++++|+.
T Consensus       477 A~~aL~nLS~d-~~~R~~-lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~  552 (778)
T 3opb_A          477 VVRIIYNITRS-KNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFE  552 (778)
T ss_dssp             HHHHHHHHHTS-GGGHHH-HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHH
T ss_pred             HHHHHHHHcCC-HHHHHH-HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHH
Confidence            99999999987 444555 78999999999999876443   89999999999985433221  111    389999999


Q ss_pred             hhcC-CCH-------------HHHHHHHHHHHHhhccCCh---HhHHHHHHh-hcHHHHHhhhCCCChhHHHHHHHHHHH
Q 009514          323 LSKS-MDS-------------TIRLNALRALRNLIFLAED---KCKEEIFME-LTASLLASLICDPEPSVQEQALALVRN  384 (533)
Q Consensus       323 ll~~-~~~-------------~~~~~al~aL~~l~~~~~~---~~~~~i~~~-~~~~~l~~lL~~~~~~v~~~a~~~L~~  384 (533)
                      ++.. +..             --+..|+.||.||+...++   +.+..++++ ++++.|..+|.+++..+|..|++++.|
T Consensus       553 LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~N  632 (778)
T 3opb_A          553 LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISN  632 (778)
T ss_dssp             TSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             HcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            9983 211             1267899999999986543   457888885 999999999999999999999999999


Q ss_pred             hhcCCcchH-HHHHhhcCc----hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH
Q 009514          385 LVDGRINSV-EYIFAEDGI----ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK  459 (533)
Q Consensus       385 l~~~~~~~~-~~i~~~~~~----~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~  459 (533)
                      ++.+. +.+ ..+++.+..    -++.|+.++.+ .+.+++.+|+|+|.|++.+++...+.+++.      .++++.++.
T Consensus       633 L~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~~ia~~ll~~------~~gi~~Ll~  704 (778)
T 3opb_A          633 MMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIPLIAKELLTK------KELIENAIQ  704 (778)
T ss_dssp             HHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCHHHHHHHTTC------HHHHHHHHH
T ss_pred             HhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHc------cccHHHHHH
Confidence            99743 332 234432211    37788888876 899999999999999987777677777762      578899999


Q ss_pred             hhcc--CChhHHHHHHHHHHhhcC-CCCCCcHHHHHHHH-HCCcHHHHHhhhcCC
Q 009514          460 FLQS--NDSRLRTAAVWAVLNLTC-SSSPGSSGRLVKLH-DAGIVSHVKNMVNDP  510 (533)
Q Consensus       460 ~L~~--~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~l~-~~g~~~~L~~ll~~~  510 (533)
                      ++++  ++.+++..++.++.|++. ....+..+....+. .......|.++++++
T Consensus       705 lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~  759 (778)
T 3opb_A          705 VFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG  759 (778)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence            9998  899999999999999994 11122222333444 444567788888654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=6.9e-26  Score=212.32  Aligned_cols=241  Identities=24%  Similarity=0.307  Sum_probs=219.4

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514          230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS  309 (533)
Q Consensus       230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~  309 (533)
                      |.+|.++++|+++++.++..|+++|.+++...+..+.. +.+.|+++.|+++|++++++++..|+++|+|++.+.+..+.
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH-HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            57899999999999999999999999998875544444 78899999999999999999999999999999987788888


Q ss_pred             HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514          310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~  389 (533)
                      .+.+.|+++.++.+++++++.++..++++|.+++.. .++.+..+.+.++++.+++++.+++++++..++++|.+++...
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999863 4678889999999999999999999999999999999999987


Q ss_pred             cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHH
Q 009514          390 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR  469 (533)
Q Consensus       390 ~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~  469 (533)
                      +.....+.+.+  .++.|..++.+ +++.++..++++|++++.+++..++.+.+       .|+++.++++++++++.++
T Consensus       160 ~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-------~~~i~~L~~ll~~~~~~v~  229 (252)
T 4hxt_A          160 DEAIKAIVDAG--GVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAIKAIVD-------AGGVEVLQKLLTSTDSEVQ  229 (252)
T ss_dssp             HHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHHHHHHH-------TTHHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHHHHCc--CHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-------CCCHHHHHHHHCCCcHHHH
Confidence            77667777766  88999999987 88999999999999999877777777775       8999999999999999999


Q ss_pred             HHHHHHHHhhcCC
Q 009514          470 TAAVWAVLNLTCS  482 (533)
Q Consensus       470 ~~a~~~L~~l~~~  482 (533)
                      ..|+|+|.+++..
T Consensus       230 ~~a~~~L~~l~~~  242 (252)
T 4hxt_A          230 KEAQRALENIKSG  242 (252)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999999964

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=2.3e-25  Score=208.86  Aligned_cols=242  Identities=21%  Similarity=0.328  Sum_probs=217.2

Q ss_pred             hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh
Q 009514          271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC  350 (533)
Q Consensus       271 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~  350 (533)
                      .....+.++.+|++++++++..|+++|.++.....+.+..+.+.|+++.|+++++++++.++..++++|.+++.+ +++.
T Consensus        10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~   88 (252)
T 4db8_A           10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQ   88 (252)
T ss_dssp             TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHH
T ss_pred             ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHH
Confidence            345688999999999999999999999887765666777899999999999999999999999999999999874 4678


Q ss_pred             HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHh
Q 009514          351 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNV  430 (533)
Q Consensus       351 ~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l  430 (533)
                      +..+.+.|+++.++++|+++++.++..++++|.+++.+.+.....+...+  .++.|.++|.+ +++.++..++++|+|+
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~-~~~~v~~~a~~~L~~l  165 (252)
T 4db8_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALSNI  165 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCC--CHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999988765557777777  78999999987 7899999999999999


Q ss_pred             ccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC
Q 009514          431 ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP  510 (533)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~  510 (533)
                      +.+++...+.+++       .++++.|+.+|+++++.++..|+++|.+++.    +.++....+.+.|+++.|++++.++
T Consensus       166 ~~~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~g~i~~L~~ll~~~  234 (252)
T 4db8_A          166 ASGGNEQIQAVID-------AGALPALVQLLSSPNEQILQEALWALSNIAS----GGNEQKQAVKEAGALEKLEQLQSHE  234 (252)
T ss_dssp             TTSCHHHHHHHHH-------TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT----SCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred             HcCChHHHHHHHH-------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc----CCHHHHHHHHHCCcHHHHHHHhCCC
Confidence            9887777777665       7999999999999999999999999999995    4567788899999999999999999


Q ss_pred             CCcHHHHHHHHHHHHhh
Q 009514          511 CLDVKLRVKTALEQFNS  527 (533)
Q Consensus       511 ~~~v~~~a~~aL~~~~~  527 (533)
                      ++++++.|.++|.++..
T Consensus       235 ~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          235 NEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             SSHHHHTHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999999864

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=2.3e-25  Score=208.89  Aligned_cols=239  Identities=21%  Similarity=0.250  Sum_probs=213.0

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514          230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS  309 (533)
Q Consensus       230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~  309 (533)
                      ..++.+.+.|++++++++..|+++|+++....+..+.. +.+.|+++.|+++|++++++++..|+++|+|++.+.+..+.
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~-~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHH-HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            46889999999999999999999997764432333434 78899999999999999999999999999999987888888


Q ss_pred             HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhH-HHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK-EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~-~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                      .+.+.|+++.|+.+++++++.++..++++|+|++.+.  ..+ ..+.+.++++.+++++.++++.++..++++|.+++.+
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC--chHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999998743  345 7888999999999999999999999999999999988


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhH
Q 009514          389 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL  468 (533)
Q Consensus       389 ~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v  468 (533)
                      .++....+.+.+  +++.|..+|.+ +++.++..++++|+|++.+++..++.+++       .|+++.++.+++++++.+
T Consensus       169 ~~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~g~i~~L~~ll~~~~~~v  238 (252)
T 4db8_A          169 GNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKE-------AGALEKLEQLQSHENEKI  238 (252)
T ss_dssp             CHHHHHHHHHTT--CHHHHHHGGGC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHH-------TTHHHHHHTTTTCSSSHH
T ss_pred             ChHHHHHHHHCC--CHHHHHHHHCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHH-------CCcHHHHHHHhCCCCHHH
Confidence            777777777777  78999999987 78999999999999999888777777775       799999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 009514          469 RTAAVWAVLNLTC  481 (533)
Q Consensus       469 ~~~a~~~L~~l~~  481 (533)
                      +..|+|+|.+++.
T Consensus       239 ~~~A~~~L~~l~~  251 (252)
T 4db8_A          239 QKEAQEALEKLQS  251 (252)
T ss_dssp             HHTHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999983

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.1e-24  Score=220.55  Aligned_cols=434  Identities=11%  Similarity=0.062  Sum_probs=317.2

Q ss_pred             HHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcC-ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHh
Q 009514           75 DASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDR-FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL  153 (533)
Q Consensus        75 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l  153 (533)
                      ..++.++..+.--.|+.+..+..  ..+..+.+.+.+++. +..+..+..++|...+....  ++ ..+..++++.|.++
T Consensus       230 ~~~~~~l~~lfPi~p~~~s~lfl--~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~--cR-~~I~~~~~~~L~~~  304 (778)
T 3opb_A          230 SIIVKTLSELYPSLTTLCSEIFL--TKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDET--MR-TYITENYLQLLERS  304 (778)
T ss_dssp             HHHHHHHHHHTTTTHHHHHHHHS--TTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHH--HH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHc--cccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcH--HH-HHHHHhHHHHHHHH
Confidence            45556666666666777666543  355677777777554 44566666666666665432  33 35577899999999


Q ss_pred             cCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh-chH
Q 009514          154 LDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL-QVL  232 (533)
Q Consensus       154 l~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~-~~l  232 (533)
                      ++. ..++..|+-+|.++..........+  ....+.+.++|.++.  ...++.|++.|+.++.+ ++.|..+.+. +.+
T Consensus       305 l~~-~~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~~~~--~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L  378 (778)
T 3opb_A          305 LNV-EDVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAISRRI--VPKVEMSVEALAYLSLK-ASVKIMIRSNESFT  378 (778)
T ss_dssp             TTS-GGGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTTTCC--HHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHH
T ss_pred             hcc-HHHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHhcCC--ccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHH
Confidence            975 4788888889988764332100001  123466777776653  33489999999999875 5677777754 669


Q ss_pred             HHHHHhcCC-CCHHHHHHHHHHHHHHhhccccc-------------------------------------cchhhhhcCc
Q 009514          233 KLVVDALAH-DSSDVRSAACMCLRSVSRSIKNL-------------------------------------SAGSFMNETI  274 (533)
Q Consensus       233 ~~l~~~L~~-~~~~v~~~a~~~L~~ls~~~~~~-------------------------------------~~~~~~~~~~  274 (533)
                      +.|+++++. ++..+.+.++.+|.|++...++.                                     +...+.+.|+
T Consensus       379 ~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGv  458 (778)
T 3opb_A          379 EILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTEL  458 (778)
T ss_dssp             HHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcC
Confidence            999999995 78889999999999998753321                                     1122578899


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHH---HHHHHHHHHHHhhccCChHhH
Q 009514          275 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST---IRLNALRALRNLIFLAEDKCK  351 (533)
Q Consensus       275 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---~~~~al~aL~~l~~~~~~~~~  351 (533)
                      +|.|+.+++++++.++..|+++|.|++. ...++..+++.|+++.|++++.+....   .|..|+++|.+++...+|...
T Consensus       459 Ip~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~  537 (778)
T 3opb_A          459 ISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI  537 (778)
T ss_dssp             HHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999999999999999995 478888999999999999999887544   899999999999876665431


Q ss_pred             HHHHH-hhcHHHHHhhhCC-CCh-------------hHHHHHHHHHHHhhcCCc----chHHHHHhh-cCchHHHHHHHh
Q 009514          352 EEIFM-ELTASLLASLICD-PEP-------------SVQEQALALVRNLVDGRI----NSVEYIFAE-DGIILDAVGRQL  411 (533)
Q Consensus       352 ~~i~~-~~~~~~l~~lL~~-~~~-------------~v~~~a~~~L~~l~~~~~----~~~~~i~~~-~~~~~~~L~~~L  411 (533)
                      ..-.. .++++.|+++|.. ++.             --+..|+.+|.|++....    +....++.+ +  .++.+..+|
T Consensus       538 f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g--a~~~L~~LL  615 (778)
T 3opb_A          538 FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV--YWSTIENLM  615 (778)
T ss_dssp             SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH--HHHHHHHGG
T ss_pred             cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC--HHHHHHHHH
Confidence            00001 3789999999983 221             126689999999998763    234667775 5  789999988


Q ss_pred             ccCCchhHHHHHHHHHHHhccCChhhH-HHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHH
Q 009514          412 RIASKAEIEIQGMYVLGNVATGKESHK-EAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGR  490 (533)
Q Consensus       412 ~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  490 (533)
                      .+ .++.++.+|+++++|++...+ .+ +.+++.--+ ...+-++.|+.+++++|.++|.+|+|+|.+++.    +.+..
T Consensus       616 ~s-~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~-~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts----~~~~i  688 (778)
T 3opb_A          616 LD-ENVPLQRSTLELISNMMSHPL-TIAAKFFNLENP-QSLRNFNILVKLLQLSDVESQRAVAAIFANIAT----TIPLI  688 (778)
T ss_dssp             GC-SSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSH-HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH----HCHHH
T ss_pred             hC-CCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCc-hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC----CChHH
Confidence            87 788999999999999997433 32 223210000 001236899999999999999999999999973    34445


Q ss_pred             HHHHHHC-CcHHHHHhhhcC--CCCcHHHHHHHHHHHHhhhc
Q 009514          491 LVKLHDA-GIVSHVKNMVND--PCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       491 ~~~l~~~-g~~~~L~~ll~~--~~~~v~~~a~~aL~~~~~~~  529 (533)
                      .+.+.+. ++++.++.++++  ++++++.|+..++.++.+++
T Consensus       689 a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          689 AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence            6777776 799999999988  79999999999999999854

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.92  E-value=2.6e-22  Score=211.90  Aligned_cols=461  Identities=13%  Similarity=0.080  Sum_probs=322.5

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ   94 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~   94 (533)
                      ...++.|..+++++++.+|+.|+.+|.+++......  -.....+|.+..+..+ +..+|..+...++.++...+...  
T Consensus        86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~--  161 (588)
T 1b3u_A           86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--  161 (588)
T ss_dssp             GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH--
Confidence            345677777777888888999988888887543221  1223345566666655 56788888888888765433221  


Q ss_pred             hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhc
Q 009514           95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIA  173 (533)
Q Consensus        95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~  173 (533)
                           ....++.+..+++++++.||..|+.++..++...+.    .......+|.+..++++ +..++..|..+|..++.
T Consensus       162 -----~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~  232 (588)
T 1b3u_A          162 -----KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ  232 (588)
T ss_dssp             -----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence                 123566677888999999999999999999875432    23346789999999985 46789999999988875


Q ss_pred             CCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHH
Q 009514          174 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC  253 (533)
Q Consensus       174 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~  253 (533)
                      ..+..   ......+|.+.+++.+.  ++.+|..++.+|+.++....   ........++.+.++++++++.+|..++++
T Consensus       233 ~~~~~---~~~~~~~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  304 (588)
T 1b3u_A          233 LLPQE---DLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHK  304 (588)
T ss_dssp             HSCHH---HHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             hCCHH---HHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            43221   11223567777766554  48899999999999875311   112344678999999999999999999999


Q ss_pred             HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514          254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL  333 (533)
Q Consensus       254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  333 (533)
                      |..++...+...........++|.+..+++++++.+|..++++|+.++...+.   .......++.+..+++++++.+|.
T Consensus       305 l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~  381 (588)
T 1b3u_A          305 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRL  381 (588)
T ss_dssp             HHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHH
T ss_pred             HHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHH
Confidence            99998653321100012356788899999999999999999999988753222   112235778888999999999999


Q ss_pred             HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514          334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI  413 (533)
Q Consensus       334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~  413 (533)
                      .++.++..+....+++    ......++.+.+++.++++.++..++.++..++..-...   .+..  .+++.+.+.+.+
T Consensus       382 ~a~~~l~~l~~~~~~~----~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~--~l~~~l~~~l~d  452 (588)
T 1b3u_A          382 NIISNLDCVNEVIGIR----QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDE--KLNSLCMAWLVD  452 (588)
T ss_dssp             HHHTTCHHHHHHSCHH----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCH--HHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHhcCHH----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHH--HHHHHHHHHhcC
Confidence            9999999887654432    122345777888889999999999999998887431110   0111  166777777776


Q ss_pred             CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514          414 ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK  493 (533)
Q Consensus       414 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  493 (533)
                       +++.|+..++.+++.++.....  +...        ..++|.+..+++++++.+|..+++++..++..     ...  .
T Consensus       453 -~~~~Vr~~a~~~l~~l~~~~~~--~~~~--------~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~-----~~~--~  514 (588)
T 1b3u_A          453 -HVYAIREAATSNLKKLVEKFGK--EWAH--------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV-----CGQ--D  514 (588)
T ss_dssp             -SSHHHHHHHHHHHHHHHHHHCH--HHHH--------HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH-----HHH--H
T ss_pred             -CcHHHHHHHHHHHHHHHHHhCc--hhHH--------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-----cCH--H
Confidence             7788999999999888753211  1122        35667888888888888888888888888731     001  1


Q ss_pred             HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      .....+++.|.++++|++++||..+.++|+.+.+
T Consensus       515 ~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          515 ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence            1223467788888888788888888888887765

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=2.9e-22  Score=182.13  Aligned_cols=201  Identities=20%  Similarity=0.258  Sum_probs=181.7

Q ss_pred             hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChH
Q 009514          270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK  349 (533)
Q Consensus       270 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~  349 (533)
                      ...++.+.|+.+|++++++++..|+++|++++......+..+.+.|+++.|+++++++++.++..|+++|+|++.+ ++.
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~   87 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNE   87 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcH
Confidence            4578899999999999999999999999999987888888999999999999999999999999999999999864 456


Q ss_pred             hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHH
Q 009514          350 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN  429 (533)
Q Consensus       350 ~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~  429 (533)
                      .+..+.+.++++.++++|+++++.++..++++|.|++.++++....+++.+  .++.|.++|.+ ++++++..++++|.|
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~aL~~  164 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALSN  164 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcC--cHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999988877777888777  89999999988 789999999999999


Q ss_pred             hccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          430 VATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       430 l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      ++..++..+..+.+       .|+++.|++++.++++.++..|+++|.+++.
T Consensus       165 l~~~~~~~~~~~~~-------~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          165 IASGGNEQKQAVKE-------AGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHTSCHHHHHHHHH-------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHcCCcHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            99987777777765       7999999999999999999999999999983

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=1.7e-22  Score=183.66  Aligned_cols=200  Identities=19%  Similarity=0.195  Sum_probs=180.0

Q ss_pred             HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc
Q 009514          184 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN  263 (533)
Q Consensus       184 ~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~  263 (533)
                      ..+..+.|+.+|.++  ++.++..|+++|++++..++..+..+.+.|+++.++++|+++++.++..|+++|++++...+.
T Consensus        10 ~~~~~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A           10 HGSELPQMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ---CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             ccchhHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence            346788999988765  488999999999999987888888999999999999999999999999999999999976455


Q ss_pred             ccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514          264 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  343 (533)
Q Consensus       264 ~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~  343 (533)
                      .+.. +.+.|+++.|+.+|+++++.++..|+++|+|++.+.+..++.+.+.|+++.|++++.++++.++..++++|.|++
T Consensus        88 ~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           88 QIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHH-HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            5555 788999999999999999999999999999999877777788899999999999999999999999999999998


Q ss_pred             ccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514          344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  387 (533)
Q Consensus       344 ~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~  387 (533)
                      .. ++..+..+.+.++++.|++++.++++++++.|+++|.+++.
T Consensus       167 ~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          167 SG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            74 46688889999999999999999999999999999999874

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.90  E-value=1.5e-21  Score=206.18  Aligned_cols=459  Identities=13%  Similarity=0.135  Sum_probs=334.8

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      ..+|.+..+.++++..+|..|+.++..++..-...   .....++.+..++.+ ++.||..|+.+|+.++...+...  .
T Consensus       126 ~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~  200 (588)
T 1b3u_A          126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN--V  200 (588)
T ss_dssp             THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH--H
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh--H
Confidence            34566777777888889999999999887543321   233466777777765 78999999999999986543211  1


Q ss_pred             ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcC
Q 009514           96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAE  174 (533)
Q Consensus        96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~  174 (533)
                          ....++.+..+++++++.+|..|+.+|..++...+.    ......++|.+.++++++ ..+|..++.++..++..
T Consensus       201 ----~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~  272 (588)
T 1b3u_A          201 ----KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA  272 (588)
T ss_dssp             ----HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH
T ss_pred             ----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence                134677788899999999999999999998875432    233456888898988864 56899999999888743


Q ss_pred             CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch-hhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHH
Q 009514          175 KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE-CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC  253 (533)
Q Consensus       175 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~  253 (533)
                      ...   .......++.+.+++.++  ++.+|..++.+|+.++.... ..+.......++|.+.++++++++.+|..++++
T Consensus       273 ~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~  347 (588)
T 1b3u_A          273 VGP---EITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV  347 (588)
T ss_dssp             HCH---HHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTT
T ss_pred             hCc---ccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            111   112335678888888764  48899999999999876422 111112234678899999999999999999999


Q ss_pred             HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514          254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL  333 (533)
Q Consensus       254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  333 (533)
                      |..++...+.   . .....++|.+..++++++++++..++.+++.+.......   ......+|.+..++++++..+|.
T Consensus       348 l~~l~~~~~~---~-~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~  420 (588)
T 1b3u_A          348 IMGLSPILGK---D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRL  420 (588)
T ss_dssp             GGGGHHHHCH---H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHH
T ss_pred             HHHHHHHhhH---h-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHH
Confidence            9998765322   1 223457888999999999999999999999887643321   12245778888999999999999


Q ss_pred             HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514          334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI  413 (533)
Q Consensus       334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~  413 (533)
                      .++.++..++...+++    ......++.+.+++.++++.+++.++.++..++.....  ...+ ..  +++.+...+.+
T Consensus       421 ~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~-~~--llp~l~~~~~~  491 (588)
T 1b3u_A          421 AIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAH-AT--IIPKVLAMSGD  491 (588)
T ss_dssp             HHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHH-HH--THHHHHHTTTC
T ss_pred             HHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHH-HH--HHHHHHHHhhC
Confidence            9999999987543321    11223568888899999999999999999998754221  1111 11  67777766555


Q ss_pred             CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514          414 ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK  493 (533)
Q Consensus       414 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  493 (533)
                       ++..++..++++++.++....  .+.+.        ..++|.+...++++++++|..+++++..+...  -+. +    
T Consensus       492 -~~~~~R~~a~~~l~~l~~~~~--~~~~~--------~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~--~~~-~----  553 (588)
T 1b3u_A          492 -PNYLHRMTTLFCINVLSEVCG--QDITT--------KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI--LDN-S----  553 (588)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHHH--HHHHH--------HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG--SCH-H----
T ss_pred             -CCHHHHHHHHHHHHHHHHhcC--HHHHH--------HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH--hch-h----
Confidence             788999999999999875321  11222        46789999999999999999999999999852  121 1    


Q ss_pred             HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      +....++|.|.++++|++++||..|..||..+.+
T Consensus       554 ~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence            1223467888888899999999999999998753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.90  E-value=6.8e-22  Score=217.72  Aligned_cols=483  Identities=14%  Similarity=0.126  Sum_probs=317.3

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ   94 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~   94 (533)
                      ...++.++.+++++++.+|..|+.++..+.........-.-.+.++.+..++.+ ++.+|..++.+|..++...++....
T Consensus       173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~  252 (852)
T 4fdd_A          173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP  252 (852)
T ss_dssp             HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            356788999999999999999999999877543221111112466777777765 6799999999999999877765332


Q ss_pred             hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhc-----------CC-------
Q 009514           95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL-----------DD-------  156 (533)
Q Consensus        95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll-----------~~-------  156 (533)
                      ..    ...++.++..+++.+..+|..|+.++..++........-.-.....+|.+++.+           .+       
T Consensus       253 ~l----~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~  328 (852)
T 4fdd_A          253 HM----HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG  328 (852)
T ss_dssp             GH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred             HH----HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence            21    346677778889999999999999999988643211000112346788888887           22       


Q ss_pred             -----CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhch
Q 009514          157 -----PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQV  231 (533)
Q Consensus       157 -----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~  231 (533)
                           ...++..+..+|..++...++   .+. ...++.+.+.+.+.  ++..|+.+++++++++......-. -.-.++
T Consensus       329 dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~~l~~~l~~~--~~~~R~aa~~alg~i~~~~~~~~~-~~l~~~  401 (852)
T 4fdd_A          329 DDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILPLLKELLFHH--EWVVKESGILVLGAIAEGCMQGMI-PYLPEL  401 (852)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHHTCS--SHHHHHHHHHHHHHTTTTTHHHHG-GGHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcchHHHH-HHHHHH
Confidence                 113466777788777642211   111 12356666666554  589999999999999875433211 123468


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514          232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF  311 (533)
Q Consensus       232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  311 (533)
                      ++.++..++++++.||..+++++++++...+..... ..-.++++.|+..+.++++.++..|+++|.+++..........
T Consensus       402 l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~  480 (852)
T 4fdd_A          402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD-TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY  480 (852)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT-TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH
Confidence            999999999999999999999999998753221111 2345778889999999999999999999999986432211111


Q ss_pred             HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh---------------------------------------------ccC
Q 009514          312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLI---------------------------------------------FLA  346 (533)
Q Consensus       312 ~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~---------------------------------------------~~~  346 (533)
                      . .+.++.|...++..+......++.+++.++                                             ...
T Consensus       481 l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~  559 (852)
T 4fdd_A          481 L-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATAL  559 (852)
T ss_dssp             H-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            1 244555555555444333333334444332                                             111


Q ss_pred             ChHhHHHHHHhhcHHHHHhhh-----------------CCCChhHHHHHHHHHHHhhcCCcchHHHHH-hhcCchHHHHH
Q 009514          347 EDKCKEEIFMELTASLLASLI-----------------CDPEPSVQEQALALVRNLVDGRINSVEYIF-AEDGIILDAVG  408 (533)
Q Consensus       347 ~~~~~~~i~~~~~~~~l~~lL-----------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~~~~~~L~  408 (533)
                      +......+  ...++.+++++                 ..++.+++..+++++..++..-.......+ ...  +++.+.
T Consensus       560 g~~~~~~~--~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~--~~~~l~  635 (852)
T 4fdd_A          560 QSGFLPYC--EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSN--ILTLMY  635 (852)
T ss_dssp             GGGGHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCC--HHHHHH
T ss_pred             hHhHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCc--HHHHHH
Confidence            11010000  00112222222                 123567888888888888765444444444 233  788888


Q ss_pred             HHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcH
Q 009514          409 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSS  488 (533)
Q Consensus       409 ~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  488 (533)
                      ..+.+ +++.++..+.++++.++..........+        ..++|.+.+.+..+++.+|..|+|+++.++..-  + .
T Consensus       636 ~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~l--------~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~--~-~  703 (852)
T 4fdd_A          636 QCMQD-KMPEVRQSSFALLGDLTKACFQHVKPCI--------ADFMPILGTNLNPEFISVCNNATWAIGEISIQM--G-I  703 (852)
T ss_dssp             HHTTC-SSHHHHHHHHHHHHHHHHHCGGGTGGGH--------HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHH--G-G
T ss_pred             HHhCC-CChhHHHHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh--h-H
Confidence            88877 7789999999999999875554455555        357789999998888999999999999998411  1 0


Q ss_pred             HHHHHHHHCCcHHHHHhhhcCCC--CcHHHHHHHHHHHHhhhc
Q 009514          489 GRLVKLHDAGIVSHVKNMVNDPC--LDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       489 ~~~~~l~~~g~~~~L~~ll~~~~--~~v~~~a~~aL~~~~~~~  529 (533)
                       ...... ..+++.|.+++++++  ..+++.+..+++++....
T Consensus       704 -~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~  744 (852)
T 4fdd_A          704 -EMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC  744 (852)
T ss_dssp             -GGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHC
T ss_pred             -hHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhC
Confidence             111111 356899999998653  368999999999997653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=3.8e-21  Score=181.97  Aligned_cols=227  Identities=21%  Similarity=0.217  Sum_probs=182.5

Q ss_pred             hhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHH-hcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh
Q 009514          203 RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL  281 (533)
Q Consensus       203 ~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l  281 (533)
                      +.+..|+..|..++.+. ++...+.+.|++|.++. +|+++++.+|..|+++|++++.+.+..+.. +.+.|++|+|+.+
T Consensus        55 e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~-vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           55 QEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQ-VLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH-HHHCCCHHHHHHH
Confidence            45778888999888643 56677889999999999 999999999999999999999875555555 7889999999999


Q ss_pred             hcC-CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcH
Q 009514          282 LDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA  360 (533)
Q Consensus       282 L~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~  360 (533)
                      |++ +++.++..|+|+|+|++.++++..+.+.+.|+++.|+.++++++..++..|+|+|.+++.+ +++.++.+++.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            984 5899999999999999988888888899999999999999999999999999999999986 56789999999999


Q ss_pred             HHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc---hHHHHHHHhccCC-chhHHHHHHHHHHHhcc
Q 009514          361 SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI---ILDAVGRQLRIAS-KAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       361 ~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~---~~~~L~~~L~~~~-~~~v~~~a~~~L~~l~~  432 (533)
                      +.|+.+|.+++.++++.++++|.+++.+.+.....+-.....   .++.-.+.+++.. ..++.+.+..++.++..
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999998854333322211101   2222223333212 34555666666665553

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.88  E-value=3.6e-21  Score=212.00  Aligned_cols=485  Identities=12%  Similarity=0.066  Sum_probs=314.6

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHH-------hcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcC
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLF-------DAGVLKRLTSLLGG-SLIQRDASLESIATIFKN   87 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~-------~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~   87 (533)
                      ++.++.|+.+++++++.+++.+..+|..++.....  .+.       -...++.+++.+.+ +..+|..|+.++..+...
T Consensus       127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~--~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~  204 (852)
T 4fdd_A          127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE--ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS  204 (852)
T ss_dssp             TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT--HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH--HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence            56889999999999999999999999998854322  111       12356666666665 679999999999987755


Q ss_pred             ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHH
Q 009514           88 NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASF  166 (533)
Q Consensus        88 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~  166 (533)
                      .+......    ....++.++.++.++++.+|..|+.+|..++...+..... . -.++++.+++++++ ++.++..|++
T Consensus       205 ~~~~~~~~----~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~-~-l~~l~~~l~~~~~~~~~~vr~~a~e  278 (852)
T 4fdd_A          205 RTQALMLH----IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP-H-MHNIVEYMLQRTQDQDENVALEACE  278 (852)
T ss_dssp             TCHHHHTS----HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG-G-HHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             ccHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH-H-HHHHHHHHHHHccCCcHHHHHHHHH
Confidence            43321111    1356778888899999999999999999999865432111 1 23688888888885 4578999999


Q ss_pred             HHHhhhcCCHHHHHHH--HHcCcHHHHHHhhh----------cC---C-------CCchhHHHHHHHHHHhhccchhhhH
Q 009514          167 AFSSLIAEKEDMQKLA--FEVNGVDKLYNHLQ----------KG---S-------LHPRRFEGILLALADMCSKLECCRS  224 (533)
Q Consensus       167 ~L~~l~~~~~~~~~~~--~~~~~l~~L~~~L~----------~~---~-------~~~~~~~~a~~aL~~l~~~~~~~~~  224 (533)
                      .+..++.... ..+.+  .-...+|.+++.+.          ..   +       .++.+|..+..+|..++...+   .
T Consensus       279 ~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~---~  354 (852)
T 4fdd_A          279 FWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR---D  354 (852)
T ss_dssp             HHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG---G
T ss_pred             HHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc---H
Confidence            9998876432 11111  00123566666551          11   0       234578899999998885332   2


Q ss_pred             hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 009514          225 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF  304 (533)
Q Consensus       225 ~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~  304 (533)
                      .+ -..+++.+.++++++++.+|..|+++|++++...+..-..  .-.++++.++.+++++++.++..|+|++++++...
T Consensus       355 ~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~--~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  431 (852)
T 4fdd_A          355 EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP--YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV  431 (852)
T ss_dssp             GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG--GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred             HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            22 2357888889999999999999999999998764321111  33567899999999999999999999999988532


Q ss_pred             chhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHH
Q 009514          305 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN  384 (533)
Q Consensus       305 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~  384 (533)
                      ........-.+.++.++..+.++++.+|.+|+++|.+++...++.....+  ...++.+..+++..+.+....++.++..
T Consensus       432 ~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~~~~~~~~ai~~  509 (852)
T 4fdd_A          432 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGT  509 (852)
T ss_dssp             HHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            21100111236788888989888999999999999999864433211111  1223444444443333333223333333


Q ss_pred             hhc----------------------------CCcchHHHHHh-------hcC--------chHHHHHHHhcc--------
Q 009514          385 LVD----------------------------GRINSVEYIFA-------EDG--------IILDAVGRQLRI--------  413 (533)
Q Consensus       385 l~~----------------------------~~~~~~~~i~~-------~~~--------~~~~~L~~~L~~--------  413 (533)
                      ++.                            .+++. ..+++       .-|        .+++.+...+..        
T Consensus       510 l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~  588 (852)
T 4fdd_A          510 LADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN  588 (852)
T ss_dssp             HHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            221                            11110 00100       000        122222222221        


Q ss_pred             --------CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCC
Q 009514          414 --------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP  485 (533)
Q Consensus       414 --------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~  485 (533)
                              .++.+++..++++++.++.+........+.      +.++++.+...+.++++.+|..+.++++.++..   
T Consensus       589 ~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~------~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~---  659 (852)
T 4fdd_A          589 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA------RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA---  659 (852)
T ss_dssp             HHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHH------TCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---
T ss_pred             hcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhc------CCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHH---
Confidence                    124567888888988888644444444442      257889999999999999999999999999841   


Q ss_pred             CcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          486 GSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       486 ~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      ...+...++. . +++.+.+.+++.++.++..|.++++.+....
T Consensus       660 ~~~~~~~~l~-~-~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~  701 (852)
T 4fdd_A          660 CFQHVKPCIA-D-FMPILGTNLNPEFISVCNNATWAIGEISIQM  701 (852)
T ss_dssp             CGGGTGGGHH-H-HHHHHHHTCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHH-H-HHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence            1111112222 1 6788888887777889999999999986554

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=1.3e-20  Score=170.47  Aligned_cols=199  Identities=21%  Similarity=0.185  Sum_probs=169.9

Q ss_pred             hHHHHHHhcCCCCH--HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514          231 VLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  308 (533)
Q Consensus       231 ~l~~l~~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  308 (533)
                      .+|.++++|+++++  .++..|+++|.+++...+..+.. +.+.|++|+|+++|++++++++..|+|+|.|++.+.++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~-I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKR-VNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH-HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            58999999999888  89999999999999764555555 7889999999999999999999999999999998778899


Q ss_pred             HHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC----------------CCC
Q 009514          309 STFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC----------------DPE  371 (533)
Q Consensus       309 ~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~----------------~~~  371 (533)
                      ..+.+.|+|+.|++++. +++..+++++..+|.||+..  +..|..+.+. +++.|+.++.                ..+
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence            99999999999999998 57899999999999999763  4578888764 6999998763                136


Q ss_pred             hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC-----CchhHHHHHHHHHHHhccCC
Q 009514          372 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-----SKAEIEIQGMYVLGNVATGK  434 (533)
Q Consensus       372 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~-----~~~~v~~~a~~~L~~l~~~~  434 (533)
                      .+++++|.++|+|++..+++....+.+++| +++.|+.++++.     .+.+.++.|+.+|.|++..-
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~G-li~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~  231 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDG-LIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL  231 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTT-HHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCC-cHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence            799999999999999987777777777766 778888887652     35688999999999998753

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.86  E-value=7.7e-20  Score=173.02  Aligned_cols=228  Identities=14%  Similarity=0.107  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh
Q 009514          245 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL  323 (533)
Q Consensus       245 ~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l  323 (533)
                      +-+..|...|.+++...++ ... +...|++|+|+. +|++++++++..|+|+|+|++.+++..+..+++.|+++.|+.+
T Consensus        55 e~k~~Al~~L~~lv~~~dn-a~~-~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           55 QEREGALELLADLCENMDN-AAD-FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHH-HHH-HHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhh-HHH-HHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            5677788888888876443 223 678899999999 9999999999999999999999888889999999999999999


Q ss_pred             hcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 009514          324 SKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI  402 (533)
Q Consensus       324 l~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~  402 (533)
                      +.+ ++..++..|+|+|+|++.+. +...+.+.+.++++.|+++|++++.+++..|+|+|++++.++++.+..+.+.|  
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~-~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g--  209 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQ-EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG--  209 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT--
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC--
Confidence            985 57899999999999999754 45677788899999999999999999999999999999988888888999888  


Q ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhc
Q 009514          403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLT  480 (533)
Q Consensus       403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~  480 (533)
                      +++.|+.+|.+ +++.+++.++++|+|++.+.+......-..  ...-...+..-++.+++.  +.+..+.|...+.++-
T Consensus       210 ~i~~Lv~LL~~-~d~~v~~~al~aL~~l~~~~~~~~~~~~~~--~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          210 MVQQLVALVRT-EHSPFHEHVLGALCSLVTDFPQGVRECREP--ELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHHHHHTS-CCSTHHHHHHHHHHHHHTTCHHHHHHHHCG--GGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHcC-CChhHHHHHHHHHHHHHhCChhHHHHHhcc--HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence            89999999988 899999999999999998755332221100  000011222223445533  3456666766666655

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.85  E-value=1.7e-20  Score=169.70  Aligned_cols=195  Identities=14%  Similarity=0.124  Sum_probs=167.3

Q ss_pred             hHHHHHHhcCC-CC--chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh
Q 009514          146 LINNLLELLDD-PG--RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC  222 (533)
Q Consensus       146 ~i~~L~~ll~~-~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~  222 (533)
                      .+|.|+++|.. ++  .++..+++.+.+++..++..++.+++.|++|.|+++|.++  ++.+++.|+++|.+++..++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ--NEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHH
Confidence            57999999984 44  6788999999999998888888999999999999999875  4889999999999999877889


Q ss_pred             hHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc----------------CC
Q 009514          223 RSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------------DT  285 (533)
Q Consensus       223 ~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------------~~  285 (533)
                      +..+.+.|++|.|+++|. +++..+++.|+.+|++|+... ..+.. +.+ +++|+|++++.                ..
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~-i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNL-MIT-EALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHH-HHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHH-HHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence            999999999999999998 579999999999999999773 33444 554 57999998762                13


Q ss_pred             CHHHHHHHHHHHHHHhcCCchhHHHHHHh-CcHHHHHHhhcC------CCHHHHHHHHHHHHHhhcc
Q 009514          286 STAVQVAALGAISNIVVDFTTRRSTFIRL-GGVKLLVQLSKS------MDSTIRLNALRALRNLIFL  345 (533)
Q Consensus       286 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~al~aL~~l~~~  345 (533)
                      ++++++.|+++|+|++...++.++.+.+. |+|+.|+.+++.      .+...+++++.+|.||++.
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            77999999999999998777888888876 668999999875      2567899999999999874

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.83  E-value=6.6e-17  Score=163.27  Aligned_cols=450  Identities=11%  Similarity=0.118  Sum_probs=325.2

Q ss_pred             ccchHHHHhhhcC-CCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHHHHhcCChhh
Q 009514           16 EENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNPEV   91 (533)
Q Consensus        16 ~~~i~~L~~lL~~-~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~~l~~~~~~~   91 (533)
                      +..|+.|..=+.+ .-..-|+.|+..|..+++  +++.. +..++++.|+..|+.   +.+.-..+++.|.++...+++-
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk--~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~   96 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSK--KYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE   96 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT--TTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHH--HhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence            4577888877764 346668889999998875  34443 446688999999975   4467778999998765433321


Q ss_pred             -----------------hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhH-hhhHHHHHHh
Q 009514           92 -----------------VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-TKLINNLLEL  153 (533)
Q Consensus        92 -----------------~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~i~~L~~l  153 (533)
                                       ...|.  ...+.++.++.++++++..+|.+++++|..++...+.+.++.+.. .++++.|+.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~d~f~--~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A           97 EVEENSTRQSEDLGSQFTEIFI--KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             -----------CHHHHHHHHHH--HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             cccccccccchHHHHHHHHHHH--cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence                             11221  235679999999999999999999999999999887656776774 4999999999


Q ss_pred             cCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCC--CchhHHHHHHHHHHhhccchhhhHhhhhhc
Q 009514          154 LDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL--HPRRFEGILLALADMCSKLECCRSRCLSLQ  230 (533)
Q Consensus       154 l~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~  230 (533)
                      |+++ ..+|.++...|..++.++++.|+.+.-+|++++|++++.....  -..+.+.|+..+.+|..++..++..+.+.|
T Consensus       175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence            9965 6789999999999999999999999889999999999886531  124678899999999999999999999999


Q ss_pred             hHHHHHHhcCCCCH------HH---HHHHHHHHHHHhhcccc-----ccchhhhhcCcHHHHHHhhcCC--CHHHHHHHH
Q 009514          231 VLKLVVDALAHDSS------DV---RSAACMCLRSVSRSIKN-----LSAGSFMNETIVIPLVRLLDDT--STAVQVAAL  294 (533)
Q Consensus       231 ~l~~l~~~L~~~~~------~v---~~~a~~~L~~ls~~~~~-----~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~  294 (533)
                      ++|.|..+++.+..      ..   ...+..+++-+......     ..+..+.+.|+++.|++++..+  ...++..|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            99999999974422      11   22244555555433111     1122267899999999998755  788999999


Q ss_pred             HHHHHHhcCCchhHHHHHHhC---------cHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhc-----
Q 009514          295 GAISNIVVDFTTRRSTFIRLG---------GVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELT-----  359 (533)
Q Consensus       295 ~aL~nl~~~~~~~~~~~~~~~---------~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~-----  359 (533)
                      .+++.+..+++..++.+.+..         .+..|+.++.+. ...+|.+++.++.....+. ++.+..+.....     
T Consensus       335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~~  413 (651)
T 3grl_A          335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTID  413 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCCC
T ss_pred             HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCcccc
Confidence            999999999988888777543         334455556553 4788999999999988743 445555554410     


Q ss_pred             -------H-HHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-----cC----chHHHHHHHhccCCchhHHHH
Q 009514          360 -------A-SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-----DG----IILDAVGRQLRIASKAEIEIQ  422 (533)
Q Consensus       360 -------~-~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-----~~----~~~~~L~~~L~~~~~~~v~~~  422 (533)
                             . ..+..-+.+.|+.-..-|+.+|.++..+++...+.+++-     .|    ..++.+...|....++.++..
T Consensus       414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vg  493 (651)
T 3grl_A          414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVG  493 (651)
T ss_dssp             CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHH
T ss_pred             cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHH
Confidence                   1 123444555666555567778888888877555555441     11    267777777776567788888


Q ss_pred             HHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc--CC--hhHHHHHHHHHH
Q 009514          423 GMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--ND--SRLRTAAVWAVL  477 (533)
Q Consensus       423 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~--~~--~~v~~~a~~~L~  477 (533)
                      -+..|+.+..+++.....++.      +...++.|+..+.+  ++  .-++--|+..|+
T Consensus       494 yL~LL~~WL~e~p~AV~dFL~------~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLG  546 (651)
T 3grl_A          494 LLMLLCTWLSNCPIAVTHFLH------NSANVPFLTGQIAENLGEEEQLVQGLCALLLG  546 (651)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH------STTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCChHHHHHHHc------CCchHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence            888999898888887777776      35567999988753  22  234544444443

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.81  E-value=2.9e-18  Score=180.18  Aligned_cols=448  Identities=16%  Similarity=0.175  Sum_probs=261.4

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      .+.+.++.++.+++..+++.+...+..+++.....   . .-.+..+.+.|.+ ++.+|..|+.+|+++.  .++...  
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~---~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~--  120 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM---A-IMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITE--  120 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH---H-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHH--
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH---H-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHH--
Confidence            45566777777777777777777776665421111   1 2234556666665 6788888988888875  344432  


Q ss_pred             ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcC
Q 009514           96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAE  174 (533)
Q Consensus        96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~  174 (533)
                            ..++.+.++++++++.||..|+.++.+++...++    .....+++|.+.++|+|+ +.++..|..+|..+..+
T Consensus       121 ------~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~----~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          121 ------YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ----MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             ------HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC----CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred             ------HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh----hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence                  3467788899999999999999999999986653    233458999999999864 57899999999999876


Q ss_pred             CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHH
Q 009514          175 KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL  254 (533)
Q Consensus       175 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L  254 (533)
                      ++.........+.++.|++.+.+.+  +-.+...+.+++.++..++..     ....++.+..++++.++.|+..|++++
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~--~~~q~~il~~l~~l~~~~~~~-----~~~~l~~l~~~l~~~~~~V~~ea~~~i  263 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECT--EWGQIFILDCLSNYNPKDDRE-----AQSICERVTPRLSHANSAVVLSAVKVL  263 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHTSCCCSHHH-----HHHHHHHHTTCSCSSTTHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCC--chHHHHHHHHHHHhCCCChHH-----HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            5421000001123566777666553  556777888888877543322     235688888899999999999999999


Q ss_pred             HHHhhcc---ccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH------------------HH-
Q 009514          255 RSVSRSI---KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST------------------FI-  312 (533)
Q Consensus       255 ~~ls~~~---~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~------------------~~-  312 (533)
                      ..+....   +....  .....+.++|+.++. +++++|..|+.+|..+....+.....                  .+ 
T Consensus       264 ~~l~~~~~~~~~~~~--~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~  340 (591)
T 2vgl_B          264 MKFLELLPKDSDYYN--MLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLD  340 (591)
T ss_dssp             HHSCCSCCBTTBSHH--HHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHH
T ss_pred             HHHhhccCCCHHHHH--HHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHH
Confidence            9986421   11111  122456678887764 88999999999999987633221100                  00 


Q ss_pred             ------Hh----CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHH
Q 009514          313 ------RL----GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV  382 (533)
Q Consensus       313 ------~~----~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L  382 (533)
                            ..    .+++.|..++.+.+.++|..+++++++++...++      .....++.+++++.+....+...++..+
T Consensus       341 ~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~------~~~~~v~~Ll~ll~~~~~~v~~e~i~~l  414 (591)
T 2vgl_B          341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ------SAERCVSTLLDLIQTKVNYVVQEAIVVI  414 (591)
T ss_dssp             HHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh------HHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence                  00    1222233333333444444444444444332110      0112344444444444444444444444


Q ss_pred             HHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514          383 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  462 (533)
Q Consensus       383 ~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~  462 (533)
                      .++....++..     +  .++..|...+.+...++++..++|+||.++...++ .            ...+..+++.+.
T Consensus       415 ~~ii~~~p~~~-----~--~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-~------------~~~l~~l~~~~~  474 (591)
T 2vgl_B          415 RDIFRKYPNKY-----E--SIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-A------------DELLESFLEGFH  474 (591)
T ss_dssp             HHHHHHSCSSC-----C--TTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-H------------HHHHHHHSTTCS
T ss_pred             HHHHHHCcchH-----H--HHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-H------------HHHHHHHHHhhc
Confidence            44433322210     0  13455555555444566666666666666543321 1            122334444444


Q ss_pred             cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhh-cC-CCCcHHHHHHHHHHHHhh
Q 009514          463 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-ND-PCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       463 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~~-~~~~v~~~a~~aL~~~~~  527 (533)
                      +.+..+|..++.++..+.... +..       . ...+..+.+.. .+ .+++||.||...+.-+..
T Consensus       475 ~~~~~vr~~~l~a~~Kl~~~~-p~~-------~-~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~  532 (591)
T 2vgl_B          475 DESTQVQLTLLTAIVKLFLKK-PSE-------T-QELVQQVLSLATQDSDNPDLRDRGYIYWRLLST  532 (591)
T ss_dssp             SSCHHHHHHHHHHHHHHHTTC-CST-------T-HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred             cCCHHHHHHHHHHHHHHHhcC-chH-------H-HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence            455666666666666666411 110       0 01333344443 33 577899998887766543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.81  E-value=3.2e-17  Score=172.30  Aligned_cols=410  Identities=12%  Similarity=0.098  Sum_probs=288.1

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV   96 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~   96 (533)
                      .++.+.+-|+++++.++..|..+++++. .++.-     ...++.+.+++.+ ++.||..|+.++.++...+|+...   
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---
Confidence            4577778889999999999999999987 33321     2245678888876 789999999999999887766432   


Q ss_pred             cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCC
Q 009514           97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK  175 (533)
Q Consensus        97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~  175 (533)
                         ..+.++.+..++.++++.|+.+|+.+|..++...+... ......+.++.|++.+.+ +++.+.....++.++...+
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~-~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~  233 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN-LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD  233 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC-SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc-chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC
Confidence               13467888899999999999999999999988765321 112234567777777764 5567778888888887655


Q ss_pred             HHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc---chhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHH
Q 009514          176 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK---LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACM  252 (533)
Q Consensus       176 ~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~---~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~  252 (533)
                      +....     ..++.+..++.+.  ++.++..|++++..+...   +++.... .-..+.+.++.++. +++.+|..++.
T Consensus       234 ~~~~~-----~~l~~l~~~l~~~--~~~V~~ea~~~i~~l~~~~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~  304 (591)
T 2vgl_B          234 DREAQ-----SICERVTPRLSHA--NSAVVLSAVKVLMKFLELLPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALR  304 (591)
T ss_dssp             HHHHH-----HHHHHHTTCSCSS--TTHHHHHHHHHHHHSCCSCCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHH
T ss_pred             hHHHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHH
Confidence            44322     3466777767654  478899999999998632   2222222 12345677776654 78899999999


Q ss_pred             HHHHHhhccccccc------------------hh------hhhc----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 009514          253 CLRSVSRSIKNLSA------------------GS------FMNE----TIVIPLVRLLDDTSTAVQVAALGAISNIVVDF  304 (533)
Q Consensus       253 ~L~~ls~~~~~~~~------------------~~------~~~~----~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~  304 (533)
                      +|..+....+..-.                  .+      +...    .+++.|..++.+.+.+++..++++|++++..+
T Consensus       305 ~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~  384 (591)
T 2vgl_B          305 NINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV  384 (591)
T ss_dssp             HHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence            99988753222100                  00      1122    23455666677889999999999999999766


Q ss_pred             chhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHH
Q 009514          305 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVR  383 (533)
Q Consensus       305 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~  383 (533)
                      +...     ...++.|+.++......++..++.++.++....+ +.     ...+++.+.+.+. ..+++++..++|+|+
T Consensus       385 ~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p-~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilG  453 (591)
T 2vgl_B          385 EQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP-NK-----YESIIATLCENLDSLDEPDARAAMIWIVG  453 (591)
T ss_dssp             HHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC-SS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHH
T ss_pred             hhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc-ch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4322     3579999999999999999999999999876433 22     2456788888886 467889999999999


Q ss_pred             HhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh-c
Q 009514          384 NLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL-Q  462 (533)
Q Consensus       384 ~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L-~  462 (533)
                      ..+...++. .       .+++.+.+.+.. .++.|+..++.++..+....++..            ...+..+.+.. .
T Consensus       454 ey~~~~~~~-~-------~~l~~l~~~~~~-~~~~vr~~~l~a~~Kl~~~~p~~~------------~~~i~~ll~~~~~  512 (591)
T 2vgl_B          454 EYAERIDNA-D-------ELLESFLEGFHD-ESTQVQLTLLTAIVKLFLKKPSET------------QELVQQVLSLATQ  512 (591)
T ss_dssp             TTCTTCTTH-H-------HHHHHHSTTCSS-SCHHHHHHHHHHHHHHHTTCCSTT------------HHHHHHHHHHHHT
T ss_pred             cccccccCH-H-------HHHHHHHHhhcc-CCHHHHHHHHHHHHHHHhcCchHH------------HHHHHHHHHHhhh
Confidence            998665431 1       145555444443 567899999999999987654321            13445566654 3


Q ss_pred             -cCChhHHHHHHHHHHhhcC
Q 009514          463 -SNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       463 -~~~~~v~~~a~~~L~~l~~  481 (533)
                       +.|.++|..|...+.-+..
T Consensus       513 d~~d~evrdRA~~y~~ll~~  532 (591)
T 2vgl_B          513 DSDNPDLRDRGYIYWRLLST  532 (591)
T ss_dssp             TCCCHHHHHHHHHHHTTTTT
T ss_pred             cCCChHHHHHHHHHHHHHCc
Confidence             3678999999988776653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.80  E-value=5.6e-17  Score=179.01  Aligned_cols=478  Identities=14%  Similarity=0.137  Sum_probs=311.6

Q ss_pred             cchHHHHhhhcCC--CcchhHHHHHHHHHhhcCch-h-HHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhh
Q 009514           17 ENMEFLLSLLNNE--SENVSGLGASIISHSCKTSL-E-QKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEV   91 (533)
Q Consensus        17 ~~i~~L~~lL~~~--~~~v~~~a~~~l~~~~~~~~-~-~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~   91 (533)
                      ..++.++..+.++  ++.++..|+.++..+...-. + .........++.+...+.+ ++.+|..++.+|..++...++.
T Consensus       179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~  258 (861)
T 2bpt_A          179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF  258 (861)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777788876  78899999999988653211 1 0000112245566666665 6799999999999998655432


Q ss_pred             hhhhccccCc-ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCC----------------cchhhhhHhhhHHHHHHhc
Q 009514           92 VSQFVGPDTG-RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC----------------YLQDVGIKTKLINNLLELL  154 (533)
Q Consensus        92 ~~~~~~~~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------------~~~~~~~~~~~i~~L~~ll  154 (533)
                      .....    . ..++.+...+++.+..++..|..++..++.....                +... ..-..++|.++..+
T Consensus       259 ~~~~l----~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~~ll~~l  333 (861)
T 2bpt_A          259 MKPYM----EQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL-SSIKDVVPNLLNLL  333 (861)
T ss_dssp             CHHHH----HHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH-HHHHHHHHHHHHHT
T ss_pred             HHHHH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH-HHHHHHHHHHHHHH
Confidence            21110    2 3455566677888999999999999888764210                0011 11256888898888


Q ss_pred             CCC--------CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch-hhhHh
Q 009514          155 DDP--------GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE-CCRSR  225 (533)
Q Consensus       155 ~~~--------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-~~~~~  225 (533)
                      .+.        ..++..+..+|..++.....   .+. ...++.+.+.+.+.  ++..|+.++++++.++.... ..-..
T Consensus       334 ~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~  407 (861)
T 2bpt_A          334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNITAD--NWRNREAAVMAFGSIMDGPDKVQRTY  407 (861)
T ss_dssp             TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred             HhcccccccccCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHcCCCHHHHHH
Confidence            631        24667778888877642211   000 01234455555443  58899999999999986432 11111


Q ss_pred             hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccc-cchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 009514          226 CLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL-SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF  304 (533)
Q Consensus       226 ~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~  304 (533)
                      .. ..+++.+++.++++++.+|..+++++++++...+.. ... -.-..+++.++..+.++ ++++..|++++.+++...
T Consensus       408 ~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~  484 (861)
T 2bpt_A          408 YV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ-QHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQL  484 (861)
T ss_dssp             HH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT-TTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH-HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhc
Confidence            11 257899999999999999999999999998653221 001 12346678888888775 999999999999988642


Q ss_pred             c-----hhHHHHHHhCcHHHHHHhhcCCC--HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC--------
Q 009514          305 T-----TRRSTFIRLGGVKLLVQLSKSMD--STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD--------  369 (533)
Q Consensus       305 ~-----~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~--------  369 (533)
                      .     ..... + ...++.++..+.+.+  +.+|..++++++.++...+......+ . ..++.+++.+.+        
T Consensus       485 ~~~~~~~l~~~-~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~-~l~~~l~~~l~~~~~~~~~i  560 (861)
T 2bpt_A          485 AEATPSPIYNF-Y-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-A-SISTFVMDKLGQTMSVDENQ  560 (861)
T ss_dssp             SSSSSCGGGGG-H-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-H-HHHHHHHHHHHHHTTSCGGG
T ss_pred             ccccchhhHHH-H-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-H-HHHHHHHHHHHHHHhhhccc
Confidence            2     11111 1 245778888887543  78999999999999876654332222 1 134444444431        


Q ss_pred             -------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCch-hHHHHHHHHHHHhccCChhhHHHH
Q 009514          370 -------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA-EIEIQGMYVLGNVATGKESHKEAV  441 (533)
Q Consensus       370 -------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~  441 (533)
                             ....++..++.+|.+++...+.......   ..+++.+...+.+ .++ .+++.++.+++.++..........
T Consensus       561 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~l~~~l~~~l~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~  636 (861)
T 2bpt_A          561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA---DMLMGLFFRLLEK-KDSAFIEDDVFYAISALAASLGKGFEKY  636 (861)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH---HHHHHHHHHHHHS-TTGGGTHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHcc-CCCCcHHHHHHHHHHHHHHHHhhhHHHH
Confidence                   2356788899999988865443211111   1267777777776 445 899999999999886433333344


Q ss_pred             HHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCC--CcHHHHHH
Q 009514          442 MDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPC--LDVKLRVK  519 (533)
Q Consensus       442 ~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~--~~v~~~a~  519 (533)
                      +        ..++|.+...++++++.+|..+++++..++..-  +  +...... ..+++.+.+.+++++  ++++..+.
T Consensus       637 l--------~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~--~--~~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~  703 (861)
T 2bpt_A          637 L--------ETFSPYLLKALNQVDSPVSITAVGFIADISNSL--E--EDFRRYS-DAMMNVLAQMISNPNARRELKPAVL  703 (861)
T ss_dssp             H--------HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT--G--GGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred             H--------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--c--hhccchH-HHHHHHHHHHhCCccccHhhhHHHH
Confidence            4        357889999998888899999999999988521  1  1111211 345677888887654  88999999


Q ss_pred             HHHHHHhhhc
Q 009514          520 TALEQFNSFD  529 (533)
Q Consensus       520 ~aL~~~~~~~  529 (533)
                      .+++.+....
T Consensus       704 ~~l~~l~~~~  713 (861)
T 2bpt_A          704 SVFGDIASNI  713 (861)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887643

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.78  E-value=8e-17  Score=177.76  Aligned_cols=479  Identities=11%  Similarity=0.073  Sum_probs=309.3

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcC---chHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhh
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAG---VLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVV   92 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g---~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~   92 (533)
                      .-+.|+..|.++++.++..++.+|+.++...-     ....   .++.|++.+.+  ++.+|+.++.++..++...+...
T Consensus        96 ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~-----p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~  170 (861)
T 2bpt_A           96 IKTNALTALVSIEPRIANAAAQLIAAIADIEL-----PHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQS  170 (861)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG-----GGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTS
T ss_pred             HHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC-----cccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhh
Confidence            34678888999999999999999998874321     1112   34566666664  56899999999999986532210


Q ss_pred             hhhccccCcccHHHHHHHHhcC--ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHH
Q 009514           93 SQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFS  169 (533)
Q Consensus        93 ~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~  169 (533)
                      + +........++.+...+.++  ++.+|..|++++..+...-.............++.|.+.+.+ +..++..++.++.
T Consensus       171 ~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~  249 (861)
T 2bpt_A          171 Q-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLC  249 (861)
T ss_dssp             S-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             h-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            0 01111123455666777776  789999999999987542211111111123467777777764 4678888999998


Q ss_pred             hhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhh--------------Hhhh--hhchHH
Q 009514          170 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR--------------SRCL--SLQVLK  233 (533)
Q Consensus       170 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~--------------~~~~--~~~~l~  233 (533)
                      .++...+..-...+....++.+...+.+.  ++.++..++..+..++.......              ..+.  -..++|
T Consensus       250 ~l~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~  327 (861)
T 2bpt_A          250 KIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVP  327 (861)
T ss_dssp             HHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHH
Confidence            88754322111111113445555555543  47889999999988875321100              0011  135788


Q ss_pred             HHHHhcCC-------CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-
Q 009514          234 LVVDALAH-------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT-  305 (533)
Q Consensus       234 ~l~~~L~~-------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-  305 (533)
                      .++..+.+       .++.+|..+..+|..++...+.   .  .-..+++.+.+.+.++++.++..|+++++.++.... 
T Consensus       328 ~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~  402 (861)
T 2bpt_A          328 NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---H--ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK  402 (861)
T ss_dssp             HHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---G--GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred             HHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---h--HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH
Confidence            88888874       3468999999999999876331   1  223566777778888999999999999999997653 


Q ss_pred             hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh-HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHH
Q 009514          306 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC-KEEIFMELTASLLASLICDPEPSVQEQALALVRN  384 (533)
Q Consensus       306 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~-~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~  384 (533)
                      ......+ ...++.++..+.++++.+|..++|++++++....+.. .... -...++.+++.+.++ +.++..+++++.+
T Consensus       403 ~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~  479 (861)
T 2bpt_A          403 VQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH-PKVATNCSWTIIN  479 (861)
T ss_dssp             HHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            2222223 2578889999999999999999999999876432110 0011 123467777788775 9999999999999


Q ss_pred             hhcCCc----chHHHHHhhcCchHHHHHHHhcc-CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH
Q 009514          385 LVDGRI----NSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK  459 (533)
Q Consensus       385 l~~~~~----~~~~~i~~~~~~~~~~L~~~L~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~  459 (533)
                      ++....    ......+.   .+++.+.+.+.+ +.++.++..++.+++.++..........+.        .++|.+++
T Consensus       480 l~~~~~~~~~~~l~~~~~---~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~--------~l~~~l~~  548 (861)
T 2bpt_A          480 LVEQLAEATPSPIYNFYP---ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA--------SISTFVMD  548 (861)
T ss_dssp             HHHHHSSSSSCGGGGGHH---HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH--------HHHHHHHH
T ss_pred             HHHhcccccchhhHHHHH---HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH--------HHHHHHHH
Confidence            886421    11111111   166777777764 234789999999999998754433444443        45566666


Q ss_pred             hhcc---------------CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCC-cHHHHHHHHHH
Q 009514          460 FLQS---------------NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL-DVKLRVKTALE  523 (533)
Q Consensus       460 ~L~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~-~v~~~a~~aL~  523 (533)
                      .+.+               ....++..++.+|.+++..-..    ...... ..+++.+.+.+++.+. .+++.+..++.
T Consensus       549 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~~~~l~  623 (861)
T 2bpt_A          549 KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS----SVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAIS  623 (861)
T ss_dssp             HHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG----GTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHH
T ss_pred             HHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHH-HHHHHHHHHHHccCCCCcHHHHHHHHHH
Confidence            6652               1346888999999998852111    111111 1356778888877666 88999988888


Q ss_pred             HHhhh
Q 009514          524 QFNSF  528 (533)
Q Consensus       524 ~~~~~  528 (533)
                      .+...
T Consensus       624 ~l~~~  628 (861)
T 2bpt_A          624 ALAAS  628 (861)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.77  E-value=2.6e-16  Score=174.04  Aligned_cols=479  Identities=12%  Similarity=0.089  Sum_probs=309.3

Q ss_pred             cchHHHHhhhcCC--CcchhHHHHHHHHHhhcCch-h-HHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhh
Q 009514           17 ENMEFLLSLLNNE--SENVSGLGASIISHSCKTSL-E-QKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEV   91 (533)
Q Consensus        17 ~~i~~L~~lL~~~--~~~v~~~a~~~l~~~~~~~~-~-~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~   91 (533)
                      ..++.+...++++  +..++..|+.++..+...-. + .........++.+...+.+ +..+|..++.+|..++...+..
T Consensus       172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            4567788888876  57899999999998764311 1 0011112256666666665 6789999999999998766543


Q ss_pred             hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC-----------------Ccchhh--hhHhhhHHHHHH
Q 009514           92 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP-----------------CYLQDV--GIKTKLINNLLE  152 (533)
Q Consensus        92 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-----------------~~~~~~--~~~~~~i~~L~~  152 (533)
                      .....   ....++.++..+++.+..++..|..++..++....                 ......  ..-...+|.+++
T Consensus       252 ~~~~~---~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~  328 (876)
T 1qgr_A          252 METYM---GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ  328 (876)
T ss_dssp             CHHHH---TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHH---HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH
Confidence            22111   11567777778888899999999999888875310                 000000  012457888888


Q ss_pred             hcCC--------CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch-hhh
Q 009514          153 LLDD--------PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE-CCR  223 (533)
Q Consensus       153 ll~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-~~~  223 (533)
                      .+.+        +..++..+..++..++....+   .+. ...++.+...+.+.  ++.+|+.++++++.++.... ...
T Consensus       329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~  402 (876)
T 1qgr_A          329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQL  402 (876)
T ss_dssp             HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred             HhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCC--ChHHHHHHHHHHHHHHcCCCHHHH
Confidence            8851        234677778888877643211   011 12345555555543  58999999999999986432 211


Q ss_pred             HhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc-chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 009514          224 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS-AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV  302 (533)
Q Consensus       224 ~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~-~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  302 (533)
                      .. .-.+.+|.++..++++++.||..|+++|.+++...+... .. -.-..+++.|+..+.++ +.++..++++|.+++.
T Consensus       403 ~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          403 KP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND-VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST-TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH-HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence            11 124589999999999999999999999999987633210 01 12346778888888775 9999999999999985


Q ss_pred             CCc---------------hhHHHHHHhCcHHHHHHhhcCC---CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHH
Q 009514          303 DFT---------------TRRSTFIRLGGVKLLVQLSKSM---DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLA  364 (533)
Q Consensus       303 ~~~---------------~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~  364 (533)
                      ...               .... .+ ...++.|...+...   +..+|..++.+++.++...+.+... .+. ..++.++
T Consensus       480 ~~~~~~~~~~~~~~~~~~~l~~-~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~-~l~~~l~  555 (876)
T 1qgr_A          480 AAYEAADVADDQEEPATYCLSS-SF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYP-AVQ-KTTLVIM  555 (876)
T ss_dssp             HHHHTTSCTTSCCCCCCCSSTT-TH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHH-HHH-HHHHHHH
T ss_pred             HhhhccccccccccccchhhhH-hH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHH-HHH-HHHHHHH
Confidence            321               0111 11 25677888877654   3578888999999988755443322 221 2234444


Q ss_pred             hhhC-----------CCC----hhHHHHHHHHHHHhhcCCc-chHHHHHhhcCchHHHHHHHhccCC-chhHHHHHHHHH
Q 009514          365 SLIC-----------DPE----PSVQEQALALVRNLVDGRI-NSVEYIFAEDGIILDAVGRQLRIAS-KAEIEIQGMYVL  427 (533)
Q Consensus       365 ~lL~-----------~~~----~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~~~~~~L~~~L~~~~-~~~v~~~a~~~L  427 (533)
                      ..+.           +.+    ++++..+++++..++.... +...   .....+++.+...+.+.. .+.++..++.++
T Consensus       556 ~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l  632 (876)
T 1qgr_A          556 ERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL---QISDVVMASLLRMFQSTAGSGGVQEDALMAV  632 (876)
T ss_dssp             HHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH---TTHHHHHHHHHHHC-----CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh---HHHHHHHHHHHHHHHhccCCCCccHHHHHHH
Confidence            3332           222    4577888999999987654 2222   211226777777777632 147899999999


Q ss_pred             HHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhh
Q 009514          428 GNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM  506 (533)
Q Consensus       428 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l  506 (533)
                      ++++..........+        ..++|.+...+.+. ++.+|..|++++..++...  +  +...... ..+++.|.+.
T Consensus       633 ~~l~~~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~--~--~~~~~~~-~~i~~~l~~~  699 (876)
T 1qgr_A          633 STLVEVLGGEFLKYM--------EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL--Q--SNIIPFC-DEVMQLLLEN  699 (876)
T ss_dssp             HHHHHHHGGGGGGGH--------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH--G--GGGHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHH--------HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH--H--HhhhhhH-HHHHHHHHHH
Confidence            998864322233333        34678899999887 7899999999999998421  1  1122221 3467888888


Q ss_pred             hcC--CCCcHHHHHHHHHHHHhh
Q 009514          507 VND--PCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       507 l~~--~~~~v~~~a~~aL~~~~~  527 (533)
                      +++  .+.+++..+.++++.+..
T Consensus       700 l~~~~~~~~~~~~~~~~l~~i~~  722 (876)
T 1qgr_A          700 LGNENVHRSVKPQILSVFGDIAL  722 (876)
T ss_dssp             HTCTTSCGGGHHHHHHHHHHHHH
T ss_pred             hCCccccHHhhHHHHHHHHHHHH
Confidence            876  356899999999999865

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.76  E-value=1.9e-16  Score=175.14  Aligned_cols=486  Identities=15%  Similarity=0.135  Sum_probs=305.6

Q ss_pred             ccchHHHHhhhc-------CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcC
Q 009514           16 EENMEFLLSLLN-------NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKN   87 (533)
Q Consensus        16 ~~~i~~L~~lL~-------~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~   87 (533)
                      ...++.++..|.       +++..++..|+.++..++.....  .+. ...++.+...+.+ ++.+|+.|+.+++.++..
T Consensus       320 ~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~  396 (876)
T 1qgr_A          320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG  396 (876)
T ss_dssp             HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred             HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence            345677888885       34578899999999888743221  111 1344555556655 789999999999999875


Q ss_pred             Ch-hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHH
Q 009514           88 NP-EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASF  166 (533)
Q Consensus        88 ~~-~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~  166 (533)
                      .+ +......    ...++.++..++++++.+|..|+.++.+++...+........-..+++.+++.+.+++.++..+++
T Consensus       397 ~~~~~~~~~~----~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~  472 (876)
T 1qgr_A          397 PEPSQLKPLV----IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCW  472 (876)
T ss_dssp             SCHHHHHHHH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            43 3211111    346788889999999999999999999998764321101122357889999999877778899999


Q ss_pred             HHHhhhcCCHH---------------HHHHHHHcCcHHHHHHhhhcCC-CCchhHHHHHHHHHHhhccchhhhHhhhhhc
Q 009514          167 AFSSLIAEKED---------------MQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLSLQ  230 (533)
Q Consensus       167 ~L~~l~~~~~~---------------~~~~~~~~~~l~~L~~~L~~~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~  230 (533)
                      ++.+++....+               ....  -...++.|.+.+.... .+..++..++.+++.++......... .-..
T Consensus       473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~~  549 (876)
T 1qgr_A          473 AFSSLAEAAYEAADVADDQEEPATYCLSSS--FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYP-AVQK  549 (876)
T ss_dssp             HHHHHHHHHHHTTSCTTSCCCCCCCSSTTT--HHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHH-HHHH
T ss_pred             HHHHHHHHhhhccccccccccccchhhhHh--HHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHH-HHHH
Confidence            99988743210               0000  0134677777666542 13467788888888887643221111 1124


Q ss_pred             hHHHHHHhcCC-----------CC----HHHHHHHHHHHHHHhhccc-cccchhhhhcCcHHHHHHhhcCCC--HHHHHH
Q 009514          231 VLKLVVDALAH-----------DS----SDVRSAACMCLRSVSRSIK-NLSAGSFMNETIVIPLVRLLDDTS--TAVQVA  292 (533)
Q Consensus       231 ~l~~l~~~L~~-----------~~----~~v~~~a~~~L~~ls~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~--~~v~~~  292 (533)
                      .++.+++.+..           .+    +.++..++.++..+....+ ..-.  -.-..+++.++.++++..  +.++..
T Consensus       550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~v~~~  627 (876)
T 1qgr_A          550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL--QISDVVMASLLRMFQSTAGSGGVQED  627 (876)
T ss_dssp             HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH--TTHHHHHHHHHHHC-----CCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh--HHHHHHHHHHHHHHHhccCCCCccHH
Confidence            55555555431           22    4578888999999876543 1111  123457788888887654  478999


Q ss_pred             HHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC--
Q 009514          293 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD--  369 (533)
Q Consensus       293 a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~--  369 (533)
                      ++.++++++...+......+. ..++.+...+.+. ++.+|..++++++.++...++..+..  -...++.+++.+.+  
T Consensus       628 a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~~  704 (876)
T 1qgr_A          628 ALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF--CDEVMQLLLENLGNEN  704 (876)
T ss_dssp             HHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH--HHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHhCCcc
Confidence            999999988643222112222 3667888888776 78999999999999986443323222  13456777888876  


Q ss_pred             CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCC---c-------hhHHHHHHHHHHHhccCCh----
Q 009514          370 PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS---K-------AEIEIQGMYVLGNVATGKE----  435 (533)
Q Consensus       370 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~---~-------~~v~~~a~~~L~~l~~~~~----  435 (533)
                      .+.+++..+++++++++..........+.   .+++.+.+.+....   +       ..++..++.++..+..+..    
T Consensus       705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~---~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~  781 (876)
T 1qgr_A          705 VHRSVKPQILSVFGDIALAIGGEFKKYLE---VVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQE  781 (876)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHGGGGGGGHH---HHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred             ccHHhhHHHHHHHHHHHHHhchhHHHHHH---HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence            46789999999999987532222111111   15666666555421   1       2677777776665543210    


Q ss_pred             ------hhHHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHh-h
Q 009514          436 ------SHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN-M  506 (533)
Q Consensus       436 ------~~~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~-l  506 (533)
                            ......+        ..+++.+.....++  +..+|..|+.+|+.++..  .+.. ....+.....++.|++ .
T Consensus       782 ~~~~~~~~~~~~~--------~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~--~~~~-~~~~~~~~~~i~~ll~~~  850 (876)
T 1qgr_A          782 NVHPDVMLVQPRV--------EFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTA--FGKD-VLKLVEARPMIHELLTEG  850 (876)
T ss_dssp             SCCGGGGGSGGGH--------HHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHH--HCTH-HHHHHHTSHHHHHHHHHH
T ss_pred             cccchHHHHHHHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--hCcH-HHHHHHhcHHHHHHHHHH
Confidence                  1111122        23334454555666  678999999999999852  1110 2223334456778888 8


Q ss_pred             hcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          507 VNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       507 l~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      ++++++++|..|.+|++.+.+...
T Consensus       851 l~~~~~~~r~~a~~a~~~~~~~~~  874 (876)
T 1qgr_A          851 RRSKTNKAKTLARWATKELRKLKN  874 (876)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             hhcCCHhHHHHHHHHHHHHHHhhc
Confidence            888899999999999999987654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.75  E-value=2.1e-15  Score=172.53  Aligned_cols=481  Identities=13%  Similarity=0.110  Sum_probs=321.9

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhh--h
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV--S   93 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~--~   93 (533)
                      ..++.|+..|.++++.+|..|+.+|..++..-...   .....++.+...+.+ +..+|..|..+|+.++...+...  .
T Consensus        48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~  124 (1230)
T 1u6g_C           48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS  124 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccccc
Confidence            56788999999999999999999999988543221   112345566666654 66889999999999875433210  0


Q ss_pred             hhccccCcccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhh
Q 009514           94 QFVGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSL  171 (533)
Q Consensus        94 ~~~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l  171 (533)
                      .+........++.++..++ ++++.+|..|..++..++...+.....  .....++.++..+.+ +..+|..|..++..+
T Consensus       125 ~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l  202 (1230)
T 1u6g_C          125 ALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHL  202 (1230)
T ss_dssp             CTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            0000001346788888888 588999999999999988654322211  235688888888875 457899999999999


Q ss_pred             hcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh--hhchHHHHHHhcCCCCHHHHHH
Q 009514          172 IAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL--SLQVLKLVVDALAHDSSDVRSA  249 (533)
Q Consensus       172 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~--~~~~l~~l~~~L~~~~~~v~~~  249 (533)
                      +...+..   . -...++.+++.|.+.. ++..+..++.+++.++...+.   .+.  -..++|.+++.+++.++.+|..
T Consensus       203 ~~~~~~~---~-~~~~l~~l~~~L~~~~-~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~vR~~  274 (1230)
T 1u6g_C          203 VMSCGNI---V-FVDLIEHLLSELSKND-SMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDELREY  274 (1230)
T ss_dssp             TTTC--------CTTHHHHHHHHHHHTC-SSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTTTHHH
T ss_pred             HHhcCHH---H-HHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            8655431   1 1234788888787653 345677788888888753221   222  1368999999999999999999


Q ss_pred             HHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC-------------------------------------CCHHHHHH
Q 009514          250 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-------------------------------------TSTAVQVA  292 (533)
Q Consensus       250 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-------------------------------------~~~~v~~~  292 (533)
                      +..++..++...+..-..  .-..+++.++..+..                                     ..+++|..
T Consensus       275 a~~~l~~l~~~~~~~~~~--~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~  352 (1230)
T 1u6g_C          275 CIQAFESFVRRCPKEVYP--HVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA  352 (1230)
T ss_dssp             HHHHHHHHHHCTTCCCHH--HHHHHHHHHTTCCCCC------------------------------------CTTHHHHH
T ss_pred             HHHHHHHHHHHChHHHHH--hHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHH
Confidence            999999998754322111  223445555555431                                     12457899


Q ss_pred             HHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh---------------HhHHHH--H
Q 009514          293 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED---------------KCKEEI--F  355 (533)
Q Consensus       293 a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~---------------~~~~~i--~  355 (533)
                      |+.++..++...+.....++ ...++.++..+.+.++.+|..++.++..++.....               .+...+  .
T Consensus       353 A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (1230)
T 1u6g_C          353 AAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQ  431 (1230)
T ss_dssp             HHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHH
T ss_pred             HHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHH
Confidence            99999999875443233333 46778888888888899999999998887642211               011111  1


Q ss_pred             HhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc--hhHHHHHHHHHHHhccC
Q 009514          356 MELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK--AEIEIQGMYVLGNVATG  433 (533)
Q Consensus       356 ~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~--~~v~~~a~~~L~~l~~~  433 (533)
                      -...++.+.+.+.++++.++..++.+|+.++...++.....+   ..+++.+...|.+ +.  ..++..++..+..+...
T Consensus       432 l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l---~~ll~~l~~~L~d-~~~~~~v~~~a~~~l~~~~~~  507 (1230)
T 1u6g_C          432 VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI---PVLVPGIIFSLND-KSSSSNLKIDALSCLYVILCN  507 (1230)
T ss_dssp             TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH---HHHHHHHHHHTTC-SSSCHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH---HHHHHHHHHHHcC-CCCcchHHHHHHHHHHHHHHh
Confidence            122456677779999999999999999988865443221111   1267777787876 33  48899999998888642


Q ss_pred             -ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCC-------CcHHHHHHHHHCCcHHHHHh
Q 009514          434 -KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSSGRLVKLHDAGIVSHVKN  505 (533)
Q Consensus       434 -~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~l~~~g~~~~L~~  505 (533)
                       .++.....+        ..++|.++..+.+++..++..|++++..++..-..       .......     .+++.+..
T Consensus       508 ~~~~~~~~~l--------~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~-----~ll~~ll~  574 (1230)
T 1u6g_C          508 HSPQVFHPHV--------QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK-----DLFTCTIK  574 (1230)
T ss_dssp             SCGGGGHHHH--------TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH-----HHHHHHHH
T ss_pred             CCHHHHHhHH--------HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHH-----HHHHHHHH
Confidence             222233344        46789999999999999999999999888731000       1112222     24677888


Q ss_pred             hh--cCCCCcHHHHHHHHHHHHhhhcc
Q 009514          506 MV--NDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       506 ll--~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      .+  .++++++|..|..+++.+...+.
T Consensus       575 ~l~~~d~~~~vr~~a~~~lg~L~~~~g  601 (1230)
T 1u6g_C          575 RLKAADIDQEVKERAISCMGQIICNLG  601 (1230)
T ss_dssp             HHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence            77  56777899999999999987653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.75  E-value=1e-15  Score=161.31  Aligned_cols=440  Identities=14%  Similarity=0.139  Sum_probs=300.9

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV   96 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~   96 (533)
                      +++.|.+-|+++++.++..|+.+++++.. ++    +. ...++.+.++|.+ ++.||.+|+.++.++...+|+...   
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~---  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME---  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG---
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH---
Confidence            56778888889999999999999999983 22    22 3467788888876 789999999999999987776543   


Q ss_pred             cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC----------------CCch
Q 009514           97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD----------------PGRV  160 (533)
Q Consensus        97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----------------~~~~  160 (533)
                           +.++.+..++.+.++.|+.+|+.+|..++..++. .  .......+|.++++|.+                +++.
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~-~--~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~  250 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD-M--LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL  250 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH-H--HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH-H--HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence                 3566677788999999999999999998864321 0  11223567878776642                3556


Q ss_pred             hhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcC----CCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHH
Q 009514          161 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG----SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVV  236 (533)
Q Consensus       161 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~----~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~  236 (533)
                      +.....+|..+...++...+     ...+.|.+++...    +....+...+++++..+... +..+     ..+++.+.
T Consensus       251 q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~  319 (618)
T 1w63_A          251 QVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILG  319 (618)
T ss_dssp             HHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHH
Confidence            77888899998887765432     2344455544321    11235667788888877532 2221     24678888


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc
Q 009514          237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG  316 (533)
Q Consensus       237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~  316 (533)
                      .++.++++.+|..|..+|..++...+.     .. ....+.++..+.+++..++..|+.+|..++... + .+     .+
T Consensus       320 ~~L~~~d~~vr~~aL~~L~~i~~~~p~-----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~-n-v~-----~i  386 (618)
T 1w63_A          320 RFLLNNDKNIRYVALTSLLKTVQTDHN-----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN-N-IR-----GM  386 (618)
T ss_dssp             HHHTCSSTTTHHHHHHHHHHHHHHHHH-----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS-S-TH-----HH
T ss_pred             HHHhCCCCchHHHHHHHHHHHHhhCHH-----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc-c-HH-----HH
Confidence            999999999999999999999865332     12 346678899999999999999999999998632 2 22     24


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514          317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI  396 (533)
Q Consensus       317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  396 (533)
                      ++.+..++.+.+.++|..++.+++.++..-++. ..     -.++.+++++++....+...++..+..+....|+.... 
T Consensus       387 v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~-~~-----~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~-  459 (618)
T 1w63_A          387 MKELLYFLDSCEPEFKADCASGIFLAAEKYAPS-KR-----WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY-  459 (618)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC-HH-----HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH-
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc-HH-----HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH-
Confidence            577888888889999999999999998743322 11     22577788887766667666777777777655554333 


Q ss_pred             HhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCChh----hHH--HHHHHhhHhhhhhhHHHHHHhhc--cCChh
Q 009514          397 FAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKES----HKE--AVMDQLLLRAENKAQSCIIKFLQ--SNDSR  467 (533)
Q Consensus       397 ~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~----~~~--~~~~~~~~~~~~~~~~~lv~~L~--~~~~~  467 (533)
                            ++..+...+.++ ....+...++|+||.++..-..    ..+  .+.       ...+++.+..+++  ..++.
T Consensus       460 ------~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~~~  526 (618)
T 1w63_A          460 ------TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVT-------EDEVLDILESVLISNMSTSV  526 (618)
T ss_dssp             ------HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCC-------HHHHHHHHHHHHHSTTCCHH
T ss_pred             ------HHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCC-------HHHHHHHHHHHHhccCCCHH
Confidence                  344555656542 2344455799999988631000    000  000       0233455666665  46789


Q ss_pred             HHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          468 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       468 v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      +|..+.+++..+.... +...+..        ...|.....+.+.+||.||...+.-+..
T Consensus       527 vr~~~lta~~Kl~~~~-~~~~~~l--------~~~L~~~~~~~d~evrdRA~~y~~ll~~  577 (618)
T 1w63_A          527 TRGYALTAIMKLSTRF-TCTVNRI--------KKVVSIYGSSIDVELQQRAVEYNALFKK  577 (618)
T ss_dssp             HHHHHHHHHHHHHTTC-SSCHHHH--------HHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhC-cchHHHH--------HHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence            9999999999998632 2222221        2234445677888999999998877654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.74  E-value=1.7e-15  Score=153.06  Aligned_cols=373  Identities=14%  Similarity=0.129  Sum_probs=271.0

Q ss_pred             cccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC---CCchhhhHHHHHHhhhcCCH
Q 009514          101 GRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD---PGRVGDEASFAFSSLIAEKE  176 (533)
Q Consensus       101 ~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~a~~~L~~l~~~~~  176 (533)
                      ..+|+.+..-+. +.-.+-|..|+..|..+++..+     ..+..+++|.|+..|++   +.++-..+.++|.++...++
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~-----~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR-----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT-----THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH-----HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            356777877555 4566889999999999987532     24567899999999973   33455567788877654332


Q ss_pred             H-----------------HHHH-HHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchh-hhHhhhhh-chHHHHH
Q 009514          177 D-----------------MQKL-AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC-CRSRCLSL-QVLKLVV  236 (533)
Q Consensus       177 ~-----------------~~~~-~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~-~~~~~~~~-~~l~~l~  236 (533)
                      +                 .... +.+.+.++.|+.+|...  +..+|.+++..|..++...+. .++.+... ++++.|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~--df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF--DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc--cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            2                 1112 23457799999988765  478999999999999987665 77777754 8999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCCchhHHHHH
Q 009514          237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRSTFI  312 (533)
Q Consensus       237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~~  312 (533)
                      .+|++....+|-.+...|.+++++.++.++. +.-+|+.+.|+.+++.+    ...+..-|+..+.||...+..++..+.
T Consensus       173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQkl-VAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr  251 (651)
T 3grl_A          173 DLLADSREVIRNDGVLLLQALTRSNGAIQKI-VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK  251 (651)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhcCCHHHHHH-HHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999999999999987776655 56679999999999754    448899999999999998888999999


Q ss_pred             HhCcHHHHHHhhcCCCH------HHHHH---HHHHHHHhhccCC-----hHhHHHHHHhhcHHHHHhhhCCC--ChhHHH
Q 009514          313 RLGGVKLLVQLSKSMDS------TIRLN---ALRALRNLIFLAE-----DKCKEEIFMELTASLLASLICDP--EPSVQE  376 (533)
Q Consensus       313 ~~~~i~~L~~ll~~~~~------~~~~~---al~aL~~l~~~~~-----~~~~~~i~~~~~~~~l~~lL~~~--~~~v~~  376 (533)
                      +.|.++.|..+++.+++      ....+   ++.++.-++....     +.++..+.+.|+++.+++++..+  ...++.
T Consensus       252 Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~  331 (651)
T 3grl_A          252 EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT  331 (651)
T ss_dssp             HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH
T ss_pred             HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH
Confidence            99999999999875432      12233   4455555554322     24677889999999999999765  678999


Q ss_pred             HHHHHHHHhhcCCcchHHHHHhhc-------CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhh
Q 009514          377 QALALVRNLVDGRINSVEYIFAED-------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA  449 (533)
Q Consensus       377 ~a~~~L~~l~~~~~~~~~~i~~~~-------~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~  449 (533)
                      .|+.+++.+..+++...+.+-...       ..++..|..++.+.....+|.++++++..+..+++.....+..+++|..
T Consensus       332 ~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~  411 (651)
T 3grl_A          332 ETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPST  411 (651)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcc
Confidence            999999999999886666655432       1255666666666456789999999999999988765555665443321


Q ss_pred             hhh------hHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          450 ENK------AQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       450 ~~~------~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      -.+      .-..+...+.+.|+-----|+.++..+..
T Consensus       412 ~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~  449 (651)
T 3grl_A          412 IDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQ  449 (651)
T ss_dssp             CCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHc
Confidence            110      00123344445555222236666777764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.73  E-value=4.3e-15  Score=156.61  Aligned_cols=442  Identities=12%  Similarity=0.084  Sum_probs=289.4

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV   96 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~   96 (533)
                      +....+.++.+++...+..+-..+..+++......    .-.+..+.+-|.+ ++.+|..|+.+|+++.  .++..    
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~----~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~----  140 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH----LLMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMC----  140 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHH----
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHH----
Confidence            34445556666666666655556666654332211    1134566666665 6789999999999987  34443    


Q ss_pred             cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCC
Q 009514           97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEK  175 (533)
Q Consensus        97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~  175 (533)
                          ...++.+.+++++.++.||..|+.++.+++...+.     .+ .++++.+.+++.|. +.++..|..+|..+...+
T Consensus       141 ----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-----~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          141 ----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-----LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             ----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-----GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-----HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence                23577888999999999999999999999987653     11 36788888888864 578899999999998776


Q ss_pred             HHHHHHHHHcCcHHHHHHhhhcC-------------CCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc---
Q 009514          176 EDMQKLAFEVNGVDKLYNHLQKG-------------SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL---  239 (533)
Q Consensus       176 ~~~~~~~~~~~~l~~L~~~L~~~-------------~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L---  239 (533)
                      ++.....  ...+|.++++|.+-             ..++-.+...+.+|+.++..++....     ...+.+..++   
T Consensus       211 ~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~  283 (618)
T 1w63_A          211 PDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNT  283 (618)
T ss_dssp             HHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTS
T ss_pred             hHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcc
Confidence            6532222  25678888877641             12455677888999998876554322     2334444443   


Q ss_pred             ---CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc
Q 009514          240 ---AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG  316 (533)
Q Consensus       240 ---~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~  316 (533)
                         ++.+..+...+++++..+... +    . +. ..+++.|..++.+++++++..|+.+|..++...+    ..+ ...
T Consensus       284 ~~~~~~~~aV~~ea~~~i~~l~~~-~----~-l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p----~~~-~~~  351 (618)
T 1w63_A          284 ETSKNVGNAILYETVLTIMDIKSE-S----G-LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH----NAV-QRH  351 (618)
T ss_dssp             CCSSTHHHHHHHHHHHHHHHSCCC-H----H-HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH----HHH-GGG
T ss_pred             ccccchHHHHHHHHHHHHHhcCCC-H----H-HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH----HHH-HHH
Confidence               234568999999999887432 1    1 12 2467889999999999999999999999985322    233 245


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514          317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI  396 (533)
Q Consensus       317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  396 (533)
                      .+.++..+.+++..+|..++.+|..++...+  . +.     .++.+.+.+.+.+.+++..++.+++.++...+....+ 
T Consensus       352 ~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~-  422 (618)
T 1w63_A          352 RSTIVDCLKDLDVSIKRRAMELSFALVNGNN--I-RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW-  422 (618)
T ss_dssp             HHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--T-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH-
T ss_pred             HHHHHHHccCCChhHHHHHHHHHHHHccccc--H-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH-
Confidence            6788889999999999999999999986433  1 11     2456677777889999999999999999764333333 


Q ss_pred             HhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc--CChhHHHHHHH
Q 009514          397 FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVW  474 (533)
Q Consensus       397 ~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~--~~~~v~~~a~~  474 (533)
                            +++.+.++|.. ....++..+...+..+....++.+..            +++.++.++.+  .+..+...++|
T Consensus       423 ------~v~~ll~lL~~-~~~~v~~~~~~~l~~ii~~~p~l~~~------------~v~~L~~~l~~~~~~~~~~~~~~w  483 (618)
T 1w63_A          423 ------HIDTIMRVLTT-AGSYVRDDAVPNLIQLITNSVEMHAY------------TVQRLYKAILGDYSQQPLVQVAAW  483 (618)
T ss_dssp             ------HHHHHHHHHHH-TGGGSCSSHHHHHHHHHHHSCSTHHH------------HHHHHHHHHHHCCSCSHHHHHHHH
T ss_pred             ------HHHHHHHHHHh-ccchhHHHHHHHHHHHHhcChhHHHH------------HHHHHHHHHhcccccHHHHHHHHH
Confidence                  45566666666 44555555666666665544443333            33567777764  23445557999


Q ss_pred             HHHhhcCCCCCC-cHH-HHHHHHHCCcHHHHHhhhc--CCCCcHHHHHHHHHHHHh
Q 009514          475 AVLNLTCSSSPG-SSG-RLVKLHDAGIVSHVKNMVN--DPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       475 ~L~~l~~~~~~~-~~~-~~~~l~~~g~~~~L~~ll~--~~~~~v~~~a~~aL~~~~  526 (533)
                      +|+.++..-..+ ..+ .........+++.|..+++  ..++.+|..+.+|+.++.
T Consensus       484 ilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~  539 (618)
T 1w63_A          484 CIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLS  539 (618)
T ss_dssp             HHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            999998310000 000 0000000113445555554  346678888888886664

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.70  E-value=2.4e-15  Score=172.08  Aligned_cols=484  Identities=12%  Similarity=0.091  Sum_probs=312.2

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhH------HHHHhcCchHHHHHhhc-C-ChHHHHHHHHHHHHHhcCC
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQ------KLLFDAGVLKRLTSLLG-G-SLIQRDASLESIATIFKNN   88 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~------~~i~~~g~i~~L~~lL~-~-~~~v~~~al~aL~~l~~~~   88 (533)
                      ..++.|+..|.++++.+|..|+.+|..++..-...      ..-.-...+|.|...+. + ++.++..|+.+++.++...
T Consensus        86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence            46688888888899999999999999877432211      11122346788888887 3 5789999999999998643


Q ss_pred             hhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHH
Q 009514           89 PEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASF  166 (533)
Q Consensus        89 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~  166 (533)
                      +..   + .......++.++..+.++++.+|..|+.++..++...+..    . ....+|.+++.+.+  +..++..++.
T Consensus       166 ~~~---l-~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~----~-~~~~l~~l~~~L~~~~~~~~r~~a~~  236 (1230)
T 1u6g_C          166 GGL---L-VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----V-FVDLIEHLLSELSKNDSMSTTRTYIQ  236 (1230)
T ss_dssp             CSS---C-TTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HhH---H-HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH----H-HHHHHHHHHHHhccCCchhHHHHHHH
Confidence            321   1 1111345666677788899999999999999998764321    2 23578888887763  2467788888


Q ss_pred             HHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchh-hhHhhhhhchHHHHHHhcC-----
Q 009514          167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC-CRSRCLSLQVLKLVVDALA-----  240 (533)
Q Consensus       167 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~-~~~~~~~~~~l~~l~~~L~-----  240 (533)
                      ++..++...+..-. -.-...++.+++.+.+.  ++.+|+.++.++..++...+. .+..  -..++|.+++.+.     
T Consensus       237 ~l~~l~~~~~~~~~-~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~--l~~li~~ll~~l~~d~~~  311 (1230)
T 1u6g_C          237 CIAAISRQAGHRIG-EYLEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRCPKEVYPH--VSTIINICLKYLTYDPNY  311 (1230)
T ss_dssp             HHHHHHHHSSGGGT-TSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCTTCCCHHH--HHHHHHHHTTCCCCC---
T ss_pred             HHHHHHHHhHHHHH-HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHChHHHHHh--HHHHHHHHHHHhCCCCCC
Confidence            88888753321000 00124568888877654  477899999999888764221 1111  1234444444442     


Q ss_pred             --------------------------------CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHH
Q 009514          241 --------------------------------HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA  288 (533)
Q Consensus       241 --------------------------------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~  288 (533)
                                                      +..+.+|..|+.++..++...+..-..  .-..++|.++..+.+.+++
T Consensus       312 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~  389 (1230)
T 1u6g_C          312 NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE--FYKTVSPALISRFKEREEN  389 (1230)
T ss_dssp             ---------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH--HHTTTHHHHHSTTSCSSSH
T ss_pred             CCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH--HHHHHHHHHHHHcCCCchH
Confidence                                            123578999999999998653321111  3356788888888888999


Q ss_pred             HHHHHHHHHHHHhcCCch----------------hHHHH--HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh
Q 009514          289 VQVAALGAISNIVVDFTT----------------RRSTF--IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC  350 (533)
Q Consensus       289 v~~~a~~aL~nl~~~~~~----------------~~~~~--~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~  350 (533)
                      ++..+..++..+......                ....+  .-...++.+.+.++++++.+|..++.+++.++.......
T Consensus       390 Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l  469 (1230)
T 1u6g_C          390 VKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGAL  469 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTT
T ss_pred             HHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhh
Confidence            999999998877642110                00111  112355666777899999999999999999876532211


Q ss_pred             HHHHHHhhcHHHHHhhhCCCCh--hHHHHHHHHHHHhhcCC-cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHH
Q 009514          351 KEEIFMELTASLLASLICDPEP--SVQEQALALVRNLVDGR-INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVL  427 (533)
Q Consensus       351 ~~~i~~~~~~~~l~~lL~~~~~--~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L  427 (533)
                      .. . -...++.+.+.|.++++  .++..++..+..+.... ++.....+.   .+++.+...+.+ ++..++..++.++
T Consensus       470 ~~-~-l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~---~llp~L~~~l~d-~~~~v~~~al~~l  543 (1230)
T 1u6g_C          470 TQ-H-IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQ---ALVPPVVACVGD-PFYKITSEALLVT  543 (1230)
T ss_dssp             GG-G-HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHT---TTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             HH-H-HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHH---HHHHHHHHHHcc-cchHHHHHHHHHH
Confidence            11 1 12346778888887764  89999999999887543 222222222   277888887776 6778888888888


Q ss_pred             HHhcc--CC-----hhhHHHHHHHhhHhhhhhhHHHHHHhh--ccCChhHHHHHHHHHHhhcCCCCCCc----HHHHHHH
Q 009514          428 GNVAT--GK-----ESHKEAVMDQLLLRAENKAQSCIIKFL--QSNDSRLRTAAVWAVLNLTCSSSPGS----SGRLVKL  494 (533)
Q Consensus       428 ~~l~~--~~-----~~~~~~~~~~~~~~~~~~~~~~lv~~L--~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~l  494 (533)
                      ..++.  +.     ......++        ..++|.++..+  .+.+..+|..|+.+++.++....+..    +.-...+
T Consensus       544 ~~l~~~~~~~~~~~~~~~~~~~--------~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L  615 (1230)
T 1u6g_C          544 QQLVKVIRPLDQPSSFDATPYI--------KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF  615 (1230)
T ss_dssp             HHHHHHHCCSSSCCCCCCHHHH--------HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHH
T ss_pred             HHHHHHhcCcccccccchHHHH--------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHH
Confidence            87773  11     11122333        35678888888  56778999999999999885211100    0001111


Q ss_pred             H-------------------------------HCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          495 H-------------------------------DAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       495 ~-------------------------------~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      .                               -..+++.|...+.+++..++..+..+|..+.....
T Consensus       616 ~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~  682 (1230)
T 1u6g_C          616 LERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS  682 (1230)
T ss_dssp             HHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence            0                               02245666667777788899999999998876653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.70  E-value=2.9e-15  Score=152.89  Aligned_cols=387  Identities=14%  Similarity=0.118  Sum_probs=254.8

Q ss_pred             HHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcC--ChhhHHHHHHHHHHhhhcCCCc----
Q 009514           63 LTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIRNASPCY----  136 (533)
Q Consensus        63 L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~----  136 (533)
                      |...+..+..+|..|-..|..+...+.           .+.+..++..+.+.  ++.+|..|+..|.++.......    
T Consensus         7 L~~~~s~d~~~r~~Ae~~L~~~~~~~~-----------~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~   75 (462)
T 1ibr_B            7 LEKTVSPDRLELEAAQKFLERAAVENL-----------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ   75 (462)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhhCh-----------HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHH
Confidence            333344466788888888887553210           23455566666654  6789999999999987542100    


Q ss_pred             ------chhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHH
Q 009514          137 ------LQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGIL  209 (533)
Q Consensus       137 ------~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~  209 (533)
                            ....-....+-..|++.+.+ ++.+ ..++.+++.++........   -.+.++.|++.+.+++.++..++.++
T Consensus        76 ~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al  151 (462)
T 1ibr_B           76 YQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTL  151 (462)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHH
Confidence                  01112234455667777774 5667 8889999988753211000   12467888888876511478899999


Q ss_pred             HHHHHhhccc-hhhhHhhhhhchHHHHHHhcCCC--CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514          210 LALADMCSKL-ECCRSRCLSLQVLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  286 (533)
Q Consensus       210 ~aL~~l~~~~-~~~~~~~~~~~~l~~l~~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  286 (533)
                      .+|+.++... +..-. -.-..+++.+.+++++.  ++.||..|++++.++....+..........-+++.+...+.+++
T Consensus       152 ~~l~~l~~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  230 (462)
T 1ibr_B          152 EAIGYICQDIDPEQLQ-DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  230 (462)
T ss_dssp             HHHHHHHHHSCGGGTG-GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhCCchhhH-hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC
Confidence            9999998632 11111 11135788999999988  79999999999998753211100000111124667777788899


Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh----------------
Q 009514          287 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC----------------  350 (533)
Q Consensus       287 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~----------------  350 (533)
                      ++++..++++|..++...+......+..+.++.++..+++.++.+|..+++++..++... ...                
T Consensus       231 ~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~  309 (462)
T 1ibr_B          231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-MDLAIEASEAAEQGRPPEH  309 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH-HHHHHHHCCTTCSSSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH-HHHHHhcccccccCCCccc
Confidence            999999999999998755432212221266777778888889999999999998887531 000                


Q ss_pred             -HHHHHH---hhcHHHHHhhhCC-------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhH
Q 009514          351 -KEEIFM---ELTASLLASLICD-------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI  419 (533)
Q Consensus       351 -~~~i~~---~~~~~~l~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v  419 (533)
                       ...+.+   ...++.+++.+.+       +++.++..+..+|..++...++   .++.   .+++.+...+.+ +++.+
T Consensus       310 ~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~---~~~~~l~~~l~~-~~~~~  382 (462)
T 1ibr_B          310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVP---HVLPFIKEHIKN-PDWRY  382 (462)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHH---HHHHHHHHHTTC-SSHHH
T ss_pred             hhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHH---HHHHHHHHHhcC-CChHH
Confidence             000111   2235666666642       3568999999999998865432   2222   156777777776 88999


Q ss_pred             HHHHHHHHHHhccCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          420 EIQGMYVLGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       420 ~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      +..+++++++++.+.. +.....+        ..++|.++..|+++++.||..|+|+|++++.
T Consensus       383 r~aal~~l~~l~~~~~~~~~~~~l--------~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          383 RDAAVMAFGCILEGPEPSQLKPLV--------IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHHHTSSSSCTTTTCTTT--------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999998653 2122222        4678999999999999999999999999994

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.69  E-value=6.2e-15  Score=139.92  Aligned_cols=257  Identities=15%  Similarity=0.104  Sum_probs=198.2

Q ss_pred             HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc
Q 009514          184 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN  263 (533)
Q Consensus       184 ~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~  263 (533)
                      ..+.++.|++.|.++  ++.+|..|+++|+.+..           .+.++.++++++++++.+|..|+++|..+......
T Consensus        21 ~~~~i~~L~~~L~~~--~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           21 KKLNDDELFRLLDDH--NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HTSCHHHHHHHTTCS--SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHhhHHHHHHHHHcC--CHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            456789999988765  47899999999998752           24688999999999999999999999887532110


Q ss_pred             ccchhhhhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009514          264 LSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL  342 (533)
Q Consensus       264 ~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l  342 (533)
                             ....++.|.. +++++++.++..++++|+++....+...     ...++.|..+++++++.+|..++++|+++
T Consensus        88 -------~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~  155 (280)
T 1oyz_A           88 -------EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVI  155 (280)
T ss_dssp             -------HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             -------chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence                   1123344443 4578999999999999999874332222     24578899999999999999999999987


Q ss_pred             hccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHH
Q 009514          343 IFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQ  422 (533)
Q Consensus       343 ~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~  422 (533)
                      ..            ...++.|.+++.++++.++..++++|..+....+.           +++.|...+.+ +++.++..
T Consensus       156 ~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~-----------~~~~L~~~l~d-~~~~vR~~  211 (280)
T 1oyz_A          156 ND------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD-----------IRDCFVEMLQD-KNEEVRIE  211 (280)
T ss_dssp             ---------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH-----------HHHHHHHHTTC-SCHHHHHH
T ss_pred             CC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH-----------HHHHHHHHhcC-CCHHHHHH
Confidence            43            13688999999999999999999999998543332           66778788877 88999999


Q ss_pred             HHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHH
Q 009514          423 GMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSH  502 (533)
Q Consensus       423 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~  502 (533)
                      ++++|+++.  +                ...++.|+..+++++  +|..|+++|..+..               ..+++.
T Consensus       212 A~~aL~~~~--~----------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------~~~~~~  256 (280)
T 1oyz_A          212 AIIGLSYRK--D----------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---------------KTLLPV  256 (280)
T ss_dssp             HHHHHHHTT--C----------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------GGGHHH
T ss_pred             HHHHHHHhC--C----------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------hhhhHH
Confidence            999999875  2                234577888888755  89999999999873               146889


Q ss_pred             HHhhhcC-CCCcHHHHHHHHHHH
Q 009514          503 VKNMVND-PCLDVKLRVKTALEQ  524 (533)
Q Consensus       503 L~~ll~~-~~~~v~~~a~~aL~~  524 (533)
                      |.+++++ +++++...+..+|.+
T Consensus       257 L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          257 LDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             HHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHHHhcCCCcHHHHHHHHHhhc
Confidence            9999854 566777777777754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.64  E-value=3e-14  Score=145.37  Aligned_cols=394  Identities=13%  Similarity=0.084  Sum_probs=259.2

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC---CCchhhhHHHHHHhhhcCCHHHH-
Q 009514          104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD---PGRVGDEASFAFSSLIAEKEDMQ-  179 (533)
Q Consensus       104 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~a~~~L~~l~~~~~~~~-  179 (533)
                      +..++..+.+++..+|..|...|..+...+         ..+..+.|..++.+   +..+|..|+..|.++........ 
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            345566666889999999998888754410         23566777777763   34678888888888864431000 


Q ss_pred             ----HHH------HHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCC--CHHHH
Q 009514          180 ----KLA------FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SSDVR  247 (533)
Q Consensus       180 ----~~~------~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~--~~~v~  247 (533)
                          ...      .....-..++..|.+.+  +.+ ..+..+++.++..+... .  .-.+.+|.+++.++++  ++.+|
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~--~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l~~~~~~~~~r  147 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTET--YRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANVTNPNSTEHMK  147 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCC--SSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHHHCTTCCHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCC--chh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHhccCCCCHHHH
Confidence                000      00111234666676653  456 77788888887643110 0  1146899999999988  99999


Q ss_pred             HHHHHHHHHHhhcc-ccccchhhhhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCchhHH-HHHHhCcHHHHHHh
Q 009514          248 SAACMCLRSVSRSI-KNLSAGSFMNETIVIPLVRLLDDT--STAVQVAALGAISNIVVDFTTRRS-TFIRLGGVKLLVQL  323 (533)
Q Consensus       248 ~~a~~~L~~ls~~~-~~~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~-~~~~~~~i~~L~~l  323 (533)
                      ..++.+|..++... +.....  ....+++.++..+.++  ++++|..|+++++++......... .....-.++.+...
T Consensus       148 ~~al~~l~~l~~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  225 (462)
T 1ibr_B          148 ESTLEAIGYICQDIDPEQLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA  225 (462)
T ss_dssp             HHHHHHHHHHHHHSCGGGTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchhhHh--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence            99999999998653 111111  2235778888889877  799999999999998743221110 11111246666677


Q ss_pred             hcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc------------
Q 009514          324 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN------------  391 (533)
Q Consensus       324 l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~------------  391 (533)
                      +.++++.+|..++++|..++...+...+.. +....++.++..+.+.+++++..+++.+..++.....            
T Consensus       226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  304 (462)
T 1ibr_B          226 TQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG  304 (462)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence            788899999999999999876432211111 1113466677777889999999999999888753100            


Q ss_pred             -----hHHHHHh-hcCchHHHHHHHhcc------CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH
Q 009514          392 -----SVEYIFA-EDGIILDAVGRQLRI------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK  459 (533)
Q Consensus       392 -----~~~~i~~-~~~~~~~~L~~~L~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~  459 (533)
                           ....+++ ....+++.+.+.+..      +.++.++..++.+|..++....+   .++        ..++|.+..
T Consensus       305 ~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~--------~~~~~~l~~  373 (462)
T 1ibr_B          305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV--------PHVLPFIKE  373 (462)
T ss_dssp             SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH--------HHHHHHHHH
T ss_pred             CCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH--------HHHHHHHHH
Confidence                 0000110 001156666666643      13457899999999988864332   233        356688999


Q ss_pred             hhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          460 FLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       460 ~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      .++++++.+|.+|+.+++.++....   .+..... -..+++.|.+.++|+++.||..|.++|+++.+...
T Consensus       374 ~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          374 HIKNPDWRYRDAAVMAFGCILEGPE---PSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HhcCCChHHHHHHHHHHHHHhcCCc---HHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999995211   0111111 14678999999999999999999999999987543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.64  E-value=4.1e-14  Score=134.25  Aligned_cols=256  Identities=16%  Similarity=0.120  Sum_probs=195.2

Q ss_pred             cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHH
Q 009514          101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQ  179 (533)
Q Consensus       101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~  179 (533)
                      ...++.++..++++++.+|..|+.+|.++..            .+.++.|++++.+ ++.++..++++|..+........
T Consensus        22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~   89 (280)
T 1oyz_A           22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED   89 (280)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred             HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence            4578999999999999999999999987642            3578999999985 46789999999998864332211


Q ss_pred             HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514          180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR  259 (533)
Q Consensus       180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~  259 (533)
                      .      .++.|.+.+.+. .++.+|..++++|+.+...++..     ....++.++.+++++++.+|..++++|+++..
T Consensus        90 ~------l~~~L~~~~~~d-~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           90 N------VFNILNNMALND-KSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             H------HHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             H------HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            1      223343322233 35889999999999987433211     23468999999999999999999999976532


Q ss_pred             ccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514          260 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL  339 (533)
Q Consensus       260 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL  339 (533)
                                  .+.++.|+.++.++++.++..|+++|+++....         ...++.|..+++++++.+|..++++|
T Consensus       158 ------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 ------------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGL  216 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                        357899999999999999999999999985322         24578899999999999999999999


Q ss_pred             HHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhH
Q 009514          340 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI  419 (533)
Q Consensus       340 ~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v  419 (533)
                      +++..            ...++.++.++.+++  ++..++++|..+...  .           +++.|.+.+.+++++++
T Consensus       217 ~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~--~-----------~~~~L~~~l~~~~~~~~  269 (280)
T 1oyz_A          217 SYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGDK--T-----------LLPVLDTMLYKFDDNEI  269 (280)
T ss_dssp             HHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--G-----------GHHHHHHHHTTSSCCHH
T ss_pred             HHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--h-----------hhHHHHHHHhcCCCcHH
Confidence            99852            235788888888755  889999999988542  1           67888888877677777


Q ss_pred             HHHHHHHHH
Q 009514          420 EIQGMYVLG  428 (533)
Q Consensus       420 ~~~a~~~L~  428 (533)
                      ...+...|.
T Consensus       270 ~~~~~~~l~  278 (280)
T 1oyz_A          270 ITSAIDKLK  278 (280)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            777776654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.54  E-value=3e-13  Score=122.46  Aligned_cols=190  Identities=21%  Similarity=0.195  Sum_probs=157.3

Q ss_pred             hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh
Q 009514          271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC  350 (533)
Q Consensus       271 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~  350 (533)
                      ..+.++.|+.+|+++++.++..|+.+|+.+..           .+.++.|++++.++++.+|..++++|+.+..      
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            46778999999999999999999999998753           2678999999999999999999999999843      


Q ss_pred             HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHh
Q 009514          351 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNV  430 (533)
Q Consensus       351 ~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l  430 (533)
                            ...++.+.+++.++++.++..++++|..+...  +           .++.|.+.+.+ +++.|+..++++|+++
T Consensus        80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~--~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~~  139 (211)
T 3ltm_A           80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE--R-----------AVEPLIKALKD-EDWFVRIAAAFALGEI  139 (211)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--H-----------HHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence                  13578899999999999999999999988542  1           67788888876 8999999999999988


Q ss_pred             ccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC
Q 009514          431 ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP  510 (533)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~  510 (533)
                      ..                  ...++.|..+++++++.+|..|+++|..+..               ..+++.|.++++++
T Consensus       140 ~~------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~d~  186 (211)
T 3ltm_A          140 GD------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAETG  186 (211)
T ss_dssp             CC------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHC
T ss_pred             CC------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCC
Confidence            42                  2345788899999999999999999999973               12567899999989


Q ss_pred             CCcHHHHHHHHHHHHhhhcc
Q 009514          511 CLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       511 ~~~v~~~a~~aL~~~~~~~~  530 (533)
                      ++.|+..|..+|.++.....
T Consensus       187 ~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          187 TGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             CHHHHHHHHHHHHC------
T ss_pred             CHHHHHHHHHHHHhcCCCCC
Confidence            99999999999998866543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.53  E-value=1.3e-12  Score=117.30  Aligned_cols=186  Identities=21%  Similarity=0.213  Sum_probs=157.4

Q ss_pred             hhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 009514          228 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR  307 (533)
Q Consensus       228 ~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~  307 (533)
                      ..+..+.++++|+++++.+|..|+.+|..+..            .+.++.|+++|.++++.++..|+++|+.+..     
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----   74 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----   74 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence            34678999999999999999999999976532            3568899999999999999999999998752     


Q ss_pred             HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514          308 RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  387 (533)
Q Consensus       308 ~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~  387 (533)
                            .+.++.|+.++.++++.+|..++++|+++..   +         ..++.+.+++.++++.++..++++|.++..
T Consensus        75 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~  136 (201)
T 3ltj_A           75 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---E---------RAVEPLIKALKDEDWFVRIAAAFALGEIGD  136 (201)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence                  2568899999999999999999999999843   1         357889999999999999999999999853


Q ss_pred             CCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChh
Q 009514          388 GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR  467 (533)
Q Consensus       388 ~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~  467 (533)
                      .  .           .++.|...+.+ +++.|+..++++|+.+.  .                ...++.|..+++++++.
T Consensus       137 ~--~-----------~~~~L~~~l~d-~~~~vr~~A~~aL~~~~--~----------------~~~~~~L~~~l~d~~~~  184 (201)
T 3ltj_A          137 E--R-----------AVEPLIKALKD-EDGWVRQSAADALGEIG--G----------------ERVRAAMEKLAETGTGF  184 (201)
T ss_dssp             G--G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHHC--S----------------HHHHHHHHHHHHHCCHH
T ss_pred             H--H-----------HHHHHHHHHcC-CCHHHHHHHHHHHHHhC--c----------------hhHHHHHHHHHhCCCHH
Confidence            2  1           67788888877 88999999999999883  2                23347788888999999


Q ss_pred             HHHHHHHHHHhhc
Q 009514          468 LRTAAVWAVLNLT  480 (533)
Q Consensus       468 v~~~a~~~L~~l~  480 (533)
                      +|..|..+|.++.
T Consensus       185 vr~~A~~aL~~l~  197 (201)
T 3ltj_A          185 ARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999886

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.53  E-value=3.3e-13  Score=121.17  Aligned_cols=189  Identities=20%  Similarity=0.171  Sum_probs=158.5

Q ss_pred             hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChH
Q 009514          270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK  349 (533)
Q Consensus       270 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~  349 (533)
                      ...+..+.++++|+++++.++..|+++|+.+..           .+.++.|++++.++++.+|..++++|+.+...    
T Consensus        11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~----   75 (201)
T 3ltj_A           11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE----   75 (201)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred             cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----
Confidence            456778899999999999999999999998753           25689999999999999999999999988431    


Q ss_pred             hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHH
Q 009514          350 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN  429 (533)
Q Consensus       350 ~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~  429 (533)
                              ..++.+.+++.++++.++..++++|.++...  +           .++.|.+.+.+ +++.|+..++++|++
T Consensus        76 --------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~  133 (201)
T 3ltj_A           76 --------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE--R-----------AVEPLIKALKD-EDWFVRIAAAFALGE  133 (201)
T ss_dssp             --------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--H-----------HHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence                    3578899999999999999999999998532  1           57778788876 889999999999998


Q ss_pred             hccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcC
Q 009514          430 VATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND  509 (533)
Q Consensus       430 l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~  509 (533)
                      +..                  ...++.|..+++++++.+|..|+++|..+..               ..+++.|.+++++
T Consensus       134 ~~~------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------------~~~~~~L~~~l~d  180 (201)
T 3ltj_A          134 IGD------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAET  180 (201)
T ss_dssp             HTC------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHH
T ss_pred             hCC------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhC
Confidence            752                  2345788999999999999999999999963               1257889999998


Q ss_pred             CCCcHHHHHHHHHHHHhhh
Q 009514          510 PCLDVKLRVKTALEQFNSF  528 (533)
Q Consensus       510 ~~~~v~~~a~~aL~~~~~~  528 (533)
                      +++.|+..|..+|.++...
T Consensus       181 ~~~~vr~~A~~aL~~l~~~  199 (201)
T 3ltj_A          181 GTGFARKVAVNYLETHKSL  199 (201)
T ss_dssp             CCHHHHHHHHHHHHHCC--
T ss_pred             CCHHHHHHHHHHHHHHHhh
Confidence            9999999999999987643

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.53  E-value=1.7e-12  Score=117.50  Aligned_cols=186  Identities=22%  Similarity=0.214  Sum_probs=156.0

Q ss_pred             hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514          229 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  308 (533)
Q Consensus       229 ~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  308 (533)
                      .+.++.+++.|+++++.+|..|+.+|..+..            .+.++.|++++.++++.++..|+++|+++..      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            4579999999999999999999999977532            3678899999999999999999999998762      


Q ss_pred             HHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          309 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       309 ~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                           .+.++.|+.+++++++.+|..++++|+.+..            ...++.|.+++.++++.++..++++|.++...
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~  142 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE  142 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH
Confidence                 2568899999999999999999999999843            13578899999999999999999999998532


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhH
Q 009514          389 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL  468 (533)
Q Consensus       389 ~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v  468 (533)
                        +           .++.|...+.+ +++.|+..++++|+.+..                  ...++.|..+++++++.+
T Consensus       143 --~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~------------------~~~~~~L~~~l~d~~~~v  190 (211)
T 3ltm_A          143 --R-----------AVEPLIKALKD-EDGWVRQSAADALGEIGG------------------ERVRAAMEKLAETGTGFA  190 (211)
T ss_dssp             --G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHHCS------------------HHHHHHHHHHHHHCCHHH
T ss_pred             --H-----------HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc------------------hhHHHHHHHHHhCCCHHH
Confidence              1           67788888876 889999999999998842                  133477888899999999


Q ss_pred             HHHHHHHHHhhcC
Q 009514          469 RTAAVWAVLNLTC  481 (533)
Q Consensus       469 ~~~a~~~L~~l~~  481 (533)
                      |..|..+|.++..
T Consensus       191 r~~A~~aL~~~~~  203 (211)
T 3ltm_A          191 RKVAVNYLETHKS  203 (211)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999999986

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.52  E-value=7.2e-12  Score=131.61  Aligned_cols=442  Identities=11%  Similarity=0.086  Sum_probs=285.6

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhh--cC-ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLL--GG-SLIQRDASLESIATIFKNNPEVVSQ   94 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL--~~-~~~v~~~al~aL~~l~~~~~~~~~~   94 (533)
                      +++.+.+=|+++++.++-.|..+++++.. ++    +. ....+.+.+.|  .+ ++-||.+|+.|+.++...+|+... 
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~-  184 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS-RE----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP-  184 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HH----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HH----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-
Confidence            45666677778899999999999999863 33    22 34678888888  54 789999999999999987776532 


Q ss_pred             hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHH----HhcCC--------------
Q 009514           95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLL----ELLDD--------------  156 (533)
Q Consensus        95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~----~ll~~--------------  156 (533)
                           ..+.++.+..++.+.++.|+.+|+.++..++..++..      ....+|.++    +++..              
T Consensus       185 -----~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~------~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~  253 (621)
T 2vgl_A          185 -----MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE------FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVP  253 (621)
T ss_dssp             -----CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH------HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred             -----chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence                 1367888999999999999999999999998765321      113444444    33321              


Q ss_pred             CCchhhhHHHHHHhhhcC-CHHHHHHHHHcCcHHHHHHhhhcCCC---------CchhHHHHHHHHHHhhccchhhhHhh
Q 009514          157 PGRVGDEASFAFSSLIAE-KEDMQKLAFEVNGVDKLYNHLQKGSL---------HPRRFEGILLALADMCSKLECCRSRC  226 (533)
Q Consensus       157 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~L~~~~~---------~~~~~~~a~~aL~~l~~~~~~~~~~~  226 (533)
                      +++.+......+..+... +++..+.+.+  .++.+++.+.+...         ...+...++.++..+.. +++...  
T Consensus       254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~--  328 (621)
T 2vgl_A          254 APWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV--  328 (621)
T ss_dssp             SHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH--
T ss_pred             CchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH--
Confidence            245677777888887753 4554443322  23344432222110         11455566777777653 222221  


Q ss_pred             hhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCc
Q 009514          227 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFT  305 (533)
Q Consensus       227 ~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~  305 (533)
                         ..++.+..++.+.++++|..+...|..++...+..  . +. ....+.++..|+ ++|..++..++..|..++.  +
T Consensus       329 ---~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~  399 (621)
T 2vgl_A          329 ---RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--E-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD--R  399 (621)
T ss_dssp             ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--H-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--H
T ss_pred             ---HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--H-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--h
Confidence               45778889999999999999999999997653211  1 12 356777888888 9999999999999999984  2


Q ss_pred             hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHh
Q 009514          306 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL  385 (533)
Q Consensus       306 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l  385 (533)
                      .+.+     .++..|..++...+.+++..++.+++.++..-++..      .-.++.+++++......+...+...+..+
T Consensus       400 ~Nv~-----~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~ev~~~l~~i  468 (621)
T 2vgl_A          400 SNAQ-----QIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY------TWYVDTILNLIRIAGDYVSEEVWYRVIQI  468 (621)
T ss_dssp             HHHH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSHHHHHHHHH
T ss_pred             hhHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence            3322     456678888888899999999999998874322211      12356777777655445556666667777


Q ss_pred             hcCCcchHHHHHhhcCchHHHHHHHhccCC-chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC
Q 009514          386 VDGRINSVEYIFAEDGIILDAVGRQLRIAS-KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN  464 (533)
Q Consensus       386 ~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~  464 (533)
                      ....++...+       .+..+...+.... ...+...++|++|..+..-++. ..+.    |   ...+..+..-+...
T Consensus       469 i~~~~~~~~~-------~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~-~~~~----p---~~~l~~l~~~~~~~  533 (621)
T 2vgl_A          469 VINRDDVQGY-------AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGD-PRSS----P---LIQFNLLHSKFHLC  533 (621)
T ss_dssp             HGGGCSCHHH-------HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS-TTSC----H---HHHHHHHHHHHTTS
T ss_pred             HhCChhHHHH-------HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhccc-CCCC----H---HHHHHHHHHHhccC
Confidence            6555543333       2344455565522 2356677889999876311100 0000    0   12334555555677


Q ss_pred             ChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc--CCCCcHHHHHHHHHHHHh
Q 009514          465 DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN--DPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       465 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~--~~~~~v~~~a~~aL~~~~  526 (533)
                      +..+|..+..++..+... .+...+.        +...|.....  +.+.|||.||...+.-+.
T Consensus       534 ~~~v~~~~Lta~~Kl~~~-~p~~~~~--------i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~  588 (621)
T 2vgl_A          534 SVPTRALLLSTYIKFVNL-FPEVKAT--------IQDVLRSDSQLKNADVELQQRAVEYLRLST  588 (621)
T ss_dssp             CHHHHHHHHHHHHHHHHH-CGGGHHH--------HHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH-ChHHHHH--------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence            889999999999988741 1111111        1223333334  789999999988876664

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.52  E-value=1.5e-11  Score=129.15  Aligned_cols=436  Identities=14%  Similarity=0.123  Sum_probs=283.5

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV   96 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~   96 (533)
                      +....+.++.+++...+..+-..+..+++.......    -.+..+.+-|.+ ++-+|..|+.+++++.  .++..+   
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~----L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~---  145 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIR----LINNAIKNDLASRNPTFMGLALHCIANVG--SREMAE---  145 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH---
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHH----HHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH---
Confidence            456677788888888888888888887755432211    123455555655 7789999999999985  355543   


Q ss_pred             cccCcccHHHHHHHH--hcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhc
Q 009514           97 GPDTGRTLSCIIEIV--KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIA  173 (533)
Q Consensus        97 ~~~~~~~i~~l~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~  173 (533)
                           ..++.+.+++  .+.++.||..|+.|+..++...++.    +...++++.+.++|+| ++.++..|..++..++.
T Consensus       146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~----~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL----VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG----CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh----cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence                 3466788888  8999999999999999999976532    2124789999999986 45788888899998887


Q ss_pred             CCHHHHHHHHHcCcHHHHHHhhh----cCCC-----------CchhHHHHHHHHHHhhcc-chhhhHhhhhhchHHHHHH
Q 009514          174 EKEDMQKLAFEVNGVDKLYNHLQ----KGSL-----------HPRRFEGILLALADMCSK-LECCRSRCLSLQVLKLVVD  237 (533)
Q Consensus       174 ~~~~~~~~~~~~~~l~~L~~~L~----~~~~-----------~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~~l~~l~~  237 (533)
                      .++..-     ...+|.+++.|.    .+..           ++-.+...+..+..++.. +++.+..+.+  .++.++.
T Consensus       217 ~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~  289 (621)
T 2vgl_A          217 KNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILN  289 (621)
T ss_dssp             HCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHH
T ss_pred             hChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHH
Confidence            765421     123455554333    2211           244677778888887753 3343333322  3444443


Q ss_pred             hcC---------CCCH--HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 009514          238 ALA---------HDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT  306 (533)
Q Consensus       238 ~L~---------~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~  306 (533)
                      .+.         +.+.  .|...+++++..+... +.      ....++..|..++.+++++++..++.+|..++...+.
T Consensus       290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~------~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~  362 (621)
T 2vgl_A          290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PN------LLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS  362 (621)
T ss_dssp             HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HH------HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT
T ss_pred             hhccCcccccccccchHHHHHHHHHHHHHhcCCc-HH------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc
Confidence            321         2233  7888899998887522 11      1235677899999999999999999999999875432


Q ss_pred             hHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHh
Q 009514          307 RRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL  385 (533)
Q Consensus       307 ~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l  385 (533)
                       . ..+ ......++..++ +++..+|..++..|..++..   .+-+.     .+..+.+.+.+.+.+.+..++..++.+
T Consensus       363 -~-~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~l  431 (621)
T 2vgl_A          363 -H-EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAIL  431 (621)
T ss_dssp             -H-HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             -H-HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             1 223 245677778788 89999999999999999742   22222     244566667778999999999999888


Q ss_pred             hcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCC
Q 009514          386 VDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND  465 (533)
Q Consensus       386 ~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~  465 (533)
                      +...+....+       +++.|.+++.. ....+...+...+.++....++.+...            +..+.+.+.++.
T Consensus       432 a~k~~~~~~~-------~v~~Ll~ll~~-~~~~v~~ev~~~l~~ii~~~~~~~~~~------------~~~l~~~l~~~~  491 (621)
T 2vgl_A          432 AEKYAVDYTW-------YVDTILNLIRI-AGDYVSEEVWYRVIQIVINRDDVQGYA------------AKTVFEALQAPA  491 (621)
T ss_dssp             HHHHCSSTHH-------HHHHHHHHHHH-HGGGSCSHHHHHHHHHHGGGCSCHHHH------------HHHHHHHHTSSS
T ss_pred             HHhcCCcHHH-------HHHHHHHHHHh-hcccchHHHHHHHHHHHhCChhHHHHH------------HHHHHHHHcCcc
Confidence            7542222222       55666666665 333355555555555554444444333            346677787664


Q ss_pred             --hhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHC------CcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          466 --SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA------GIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       466 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~------g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                        ..+...++|.|+.++.           .+.+.      ..+..+.+-..+.++.+|-.+.+|+.++..
T Consensus       492 ~~~~li~~~~wilGEy~~-----------~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~  550 (621)
T 2vgl_A          492 CHENLVKVGGYILGEFGN-----------LIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVN  550 (621)
T ss_dssp             CCHHHHHHHHHHHHHHTH-----------HHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcchHH-----------HhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence              3566788899999973           11111      012334433345567788888787777643

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.32  E-value=7.9e-09  Score=109.93  Aligned_cols=218  Identities=16%  Similarity=0.138  Sum_probs=151.0

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHH-hhcC-ChHHHHHHHHHHHHHhcC-Chhhh
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTS-LLGG-SLIQRDASLESIATIFKN-NPEVV   92 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~-lL~~-~~~v~~~al~aL~~l~~~-~~~~~   92 (533)
                      +..+.+++..|+|+++..|..|+.+|.+++..+..+..+.++|++.+++. +|.. +..||+.|+.+|++|+.+ .++++
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            34677888999999999999999999999998888999999999987654 5664 779999999999999854 45665


Q ss_pred             hhhccccCcccHHHHHHHHhcCCh---------------------hhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHH
Q 009514           93 SQFVGPDTGRTLSCIIEIVKDRFA---------------------RTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLL  151 (533)
Q Consensus        93 ~~~~~~~~~~~i~~l~~ll~~~~~---------------------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~  151 (533)
                      ..+.+   .++++.+..+++....                     .+...+..+|++++..+.. ..+.+...+.+|.|+
T Consensus       113 ~~l~~---~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~-~~~~v~~~~~l~~l~  188 (684)
T 4gmo_A          113 VHLYR---LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDE-IHEAVATKQTILRLL  188 (684)
T ss_dssp             HHHHH---TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHTCHHHHHHH
T ss_pred             HHHHH---cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHhcccHHHHH
Confidence            55543   4677877776542110                     1233466788888876542 445566789999999


Q ss_pred             HhcC--C--CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcH---HHHHHhhhcCCCCchhHHHHHHHHHHhhcc-----c
Q 009514          152 ELLD--D--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGV---DKLYNHLQKGSLHPRRFEGILLALADMCSK-----L  219 (533)
Q Consensus       152 ~ll~--~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l---~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-----~  219 (533)
                      .+|.  +  +.+++..++.+|..++.++....+.+.+.+..   ..+.. +....  ...+..++..|.++...     .
T Consensus       189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~-~~~~~--~~~~~la~giL~Ni~~~~~~~d~  265 (684)
T 4gmo_A          189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLK-LATGT--DPRAVMACGVLHNVFTSLQWMDH  265 (684)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHH-HHHSS--CTTHHHHHHHHHHHHHHHTCBTT
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHH-HhcCC--cHHHHHHHHHHHhHhhhhhhhhc
Confidence            9885  2  24688899999999999999887777776643   23333 33332  23456667777776421     1


Q ss_pred             hhhhHhhhhhchHHHHHHhcC
Q 009514          220 ECCRSRCLSLQVLKLVVDALA  240 (533)
Q Consensus       220 ~~~~~~~~~~~~l~~l~~~L~  240 (533)
                      ............++.+...+.
T Consensus       266 s~~~~~~~~~~li~~l~~~l~  286 (684)
T 4gmo_A          266 SPGKDGACDAILIPTLTRALE  286 (684)
T ss_dssp             BCCGGGCSGGGTHHHHHHHHT
T ss_pred             chhhHHHHHHHHHHhhhhhHh
Confidence            111222333445666666554

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.99  E-value=2.4e-09  Score=113.88  Aligned_cols=196  Identities=15%  Similarity=0.132  Sum_probs=148.5

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHH-HhhcCCCHHHHHHHHHHHHHhhccCChHhHH
Q 009514          274 IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV-QLSKSMDSTIRLNALRALRNLIFLAEDKCKE  352 (533)
Q Consensus       274 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~  352 (533)
                      -+.++++.|++++++.|..|+++|+|++. .+..++.+...|++..++ .++.+++.++|.+|.++|.||+...+++...
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            35567788999999999999999999996 556677788889888765 5788899999999999999999877888889


Q ss_pred             HHHHhhcHHHHHhhhCCCC---------------------hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh
Q 009514          353 EIFMELTASLLASLICDPE---------------------PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL  411 (533)
Q Consensus       353 ~i~~~~~~~~l~~lL~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L  411 (533)
                      .++..++++.|..+++...                     +++..+++.+|.+++.++.+....+...+  .++.++..|
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~--~l~~l~~~L  191 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQ--TILRLLFRL  191 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCH--HHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcc--cHHHHHHHH
Confidence            9999999999988874210                     24556788999999988777777777766  566666665


Q ss_pred             cc-C-CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhh---HHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          412 RI-A-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKA---QSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       412 ~~-~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      .+ + ...+++..++.+|.+++..+....+.+.+       .+.   +..+..+ ...+...+..+++.|.|+.
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-------~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-------DQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-------CCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-------cchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence            43 2 23579999999999999988776666654       332   2233332 3344445777888888864

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.95  E-value=1.6e-07  Score=100.02  Aligned_cols=272  Identities=13%  Similarity=0.091  Sum_probs=186.7

Q ss_pred             CcHHHHHHhhhcC-CCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC--------HHHHHHHHHHHHH
Q 009514          186 NGVDKLYNHLQKG-SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS--------SDVRSAACMCLRS  256 (533)
Q Consensus       186 ~~l~~L~~~L~~~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~--------~~v~~~a~~~L~~  256 (533)
                      +++..|-++|... +.++.++..|+.+|+-+..+..   +     ..+..|.+.+.+.+        +.+|..|+..|+.
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc---H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            3566777777632 2347789999999998765432   1     24677777776554        6788888888877


Q ss_pred             HhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh-cCCCHHHHHHH
Q 009514          257 VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS-KSMDSTIRLNA  335 (533)
Q Consensus       257 ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a  335 (533)
                      .....        .+..+++.|..++.+++..++..|+.+|+.+-.+..+.       .++..|++.+ ...+..+++.+
T Consensus       464 a~~GS--------~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~a  528 (963)
T 4ady_A          464 AAMGS--------ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGL  528 (963)
T ss_dssp             HSTTC--------CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHH
T ss_pred             HhcCC--------CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHH
Confidence            64331        12356778899998888888889999998775444331       2344555543 45678899999


Q ss_pred             HHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC
Q 009514          336 LRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA  414 (533)
Q Consensus       336 l~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~  414 (533)
                      ..+|+-+..+..          ...+.+++.|. +.++.++..++.+++.-..+..+. .        .++.|...+.++
T Consensus       529 algLGll~~g~~----------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-~--------aIq~LL~~~~~d  589 (963)
T 4ady_A          529 AVGLALINYGRQ----------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-S--------AVKRLLHVAVSD  589 (963)
T ss_dssp             HHHHHHHTTTCG----------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-H--------HHHHHHHHHHHC
T ss_pred             HHHHHhhhCCCh----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-H--------HHHHHHHHhccC
Confidence            999998866443          23556666654 678888888887776555443211 0        455444555555


Q ss_pred             CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH-hhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514          415 SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK-FLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK  493 (533)
Q Consensus       415 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  493 (533)
                      .++.|+..|..+|+.+..+.++.                ++.++. ++++.++.+|..|+++|+.+..  +.+.      
T Consensus       590 ~~d~VRraAViaLGlI~~g~~e~----------------v~rlv~~L~~~~d~~VR~gAalALGli~a--Gn~~------  645 (963)
T 4ady_A          590 SNDDVRRAAVIALGFVLLRDYTT----------------VPRIVQLLSKSHNAHVRCGTAFALGIACA--GKGL------  645 (963)
T ss_dssp             SCHHHHHHHHHHHHHHTSSSCSS----------------HHHHTTTGGGCSCHHHHHHHHHHHHHHTS--SSCC------
T ss_pred             CcHHHHHHHHHHHHhhccCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHHHHhcc--CCCc------
Confidence            77889999999999988776532                244455 4467889999999999999885  1121      


Q ss_pred             HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                         ..++..|.++++|++.+|+..|..||+.+.
T Consensus       646 ---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          646 ---QSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             ---HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence               124678888899999999999999999874

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.87  E-value=1.1e-07  Score=87.47  Aligned_cols=185  Identities=13%  Similarity=0.170  Sum_probs=140.2

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514          233 KLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTF  311 (533)
Q Consensus       233 ~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~  311 (533)
                      +.+.+.+++.+|..|..|+..|..+....+.....  .-..+++.|..++. +++..++..|+.+++.++..........
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            34778889999999999999999997653322111  11356788888894 9999999999999999996443322222


Q ss_pred             HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC-c
Q 009514          312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR-I  390 (533)
Q Consensus       312 ~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~-~  390 (533)
                      . ...++.++..+.++++.+|..+..+|.+++...+.        ...++.+...+++.++.++..++..|..+.... +
T Consensus        96 ~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           96 A-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            2 35789999999999999999999999999764431        124677888899999999999999999976543 3


Q ss_pred             ch-HHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          391 NS-VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       391 ~~-~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                      +. ....+.   .+++.+...|.+ ++++|+..|..+++.++.
T Consensus       167 ~~~~~~~l~---~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          167 TALNKKLLK---LLTTSLVKTLNE-PDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GGCCHHHHH---HHHHHHHHHHTS-SCHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHH---HHHHHHHHHhcC-CChHHHHHHHHHHHHHHH
Confidence            21 122222   178888888887 889999999999988774

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.85  E-value=5.3e-08  Score=89.69  Aligned_cols=185  Identities=11%  Similarity=0.166  Sum_probs=137.8

Q ss_pred             HHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhhccccccchh
Q 009514          190 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGS  268 (533)
Q Consensus       190 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~  268 (533)
                      .+.+.+.+.  ++..|..++..|..+....+..... .-..+++.+...+. +.+..|+..|+.++..++......-.  
T Consensus        19 ~l~~~l~s~--~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~--   93 (242)
T 2qk2_A           19 DFYDKLEEK--KWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS--   93 (242)
T ss_dssp             THHHHHTCS--SHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH--
T ss_pred             HHHhhhccC--CHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH--
Confidence            356656544  5899999999999887642221111 11356888888994 99999999999999999865332111  


Q ss_pred             hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh
Q 009514          269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED  348 (533)
Q Consensus       269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~  348 (533)
                      -....++|.|+..+.++++.++..|..+|.++....+.       ...++.+...+++.++.+|..++..|..+....++
T Consensus        94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            13456889999999999999999999999999864321       23577888889999999999999999997654433


Q ss_pred             Hh-HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514          349 KC-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  387 (533)
Q Consensus       349 ~~-~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~  387 (533)
                      +. -...+. ..++.+..++.++++++|..|..++..++.
T Consensus       167 ~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          167 TALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            21 112222 458899999999999999999999988874

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.83  E-value=4.1e-06  Score=89.33  Aligned_cols=310  Identities=12%  Similarity=0.071  Sum_probs=197.2

Q ss_pred             hHHHHHHhcC----CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCC------CchhHHHHHHHHHHh
Q 009514          146 LINNLLELLD----DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL------HPRRFEGILLALADM  215 (533)
Q Consensus       146 ~i~~L~~ll~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~------~~~~~~~a~~aL~~l  215 (533)
                      ++..|-+.|.    +++.++.-|+..|..+..+...        ..+..|...|.+.+.      ++.++..|+..|+-.
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            3445555553    1223455555556555444321        124556666655420      245778888888865


Q ss_pred             hccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHH
Q 009514          216 CSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAAL  294 (533)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~  294 (533)
                      .....       +..+++.|.+.+.+.+..++..|+.+|+.+-...        .....+..|++.+ .+.+..++..++
T Consensus       465 ~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGT--------gn~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          465 AMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGT--------GKPEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             STTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC--------CCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             hcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc--------CCHHHHHHHHHHHhccCcHHHHHHHH
Confidence            43221       1134677788888777777778888877653221        1224456677755 466889999999


Q ss_pred             HHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh-hCCCCh
Q 009514          295 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEP  372 (533)
Q Consensus       295 ~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-L~~~~~  372 (533)
                      .+|+.+..+.++         .++.+++.+. +.++.+|..++.+++--..+.++.        ..++.|++. .++.+.
T Consensus       530 lgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~--------~aIq~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN--------SAVKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH--------HHHHHHHHHHHHCSCH
T ss_pred             HHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHhccCCcH
Confidence            999988765543         4556665554 578889999988887554444321        234444443 357788


Q ss_pred             hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhh
Q 009514          373 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENK  452 (533)
Q Consensus       373 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~  452 (533)
                      .+|..|+.+|+.+..++++.           .+.+..+|.++.++.||..++++|+.+..|++.  .            .
T Consensus       593 ~VRraAViaLGlI~~g~~e~-----------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~------------~  647 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYTT-----------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q------------S  647 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCSS-----------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H------------H
T ss_pred             HHHHHHHHHHHhhccCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H------------H
Confidence            99999999999988776642           334445555558899999999999999987762  2            2


Q ss_pred             hHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC--CCcHHHHHHHHHHHH
Q 009514          453 AQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQF  525 (533)
Q Consensus       453 ~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~aL~~~  525 (533)
                      ++..|..++++++..||..|+.+|+.+..-.......+...+     +..|.+...+.  ++..+.-|.-|.+-+
T Consensus       648 aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~-----l~~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          648 AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI-----NKNFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH-----HHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            335777888999999999999999999862111111133333     45566666543  445666666666544

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.82  E-value=2.9e-07  Score=80.16  Aligned_cols=186  Identities=18%  Similarity=0.200  Sum_probs=146.3

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHH
Q 009514          315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE  394 (533)
Q Consensus       315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  394 (533)
                      +.+..|..++++.|+.++.+++.+|..+....+...+...++. .++.+++++.+.|.++--.|+.+|..+..+.|-.-+
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            4678889999999999999999999999887655566666665 489999999999999999999999999988765444


Q ss_pred             HHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHH
Q 009514          395 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW  474 (533)
Q Consensus       395 ~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~  474 (533)
                      .+..    +...+...+.+ +++-.+.+++-.++.+-.-+.  ..            .++..+..++.|.|..++..+..
T Consensus       112 ~y~K----l~~aL~dlik~-~~~il~~eaae~Lgklkv~~~--~~------------~V~~~l~sLl~Skd~~vK~agl~  172 (265)
T 3b2a_A          112 TFLK----AAKTLVSLLES-PDDMMRIETIDVLSKLQPLED--SK------------LVRTYINELVVSPDLYTKVAGFC  172 (265)
T ss_dssp             HHHH----HHHHHHHHTTS-CCHHHHHHHHHHHHHCCBSCC--CH------------HHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHhcC-CCchHHHHHHHHhCcCCcccc--hH------------HHHHHHHHHHhCCChhHHHHHHH
Confidence            4444    67788888885 889999999999998843332  22            23357778889999999999999


Q ss_pred             HHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514          475 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       475 ~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~  527 (533)
                      ++.+++...  +.++..     ..++.-+-.++++.++.++++|..+|..+..
T Consensus       173 ~L~eia~~S--~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils  218 (265)
T 3b2a_A          173 LFLNMLNSS--ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALS  218 (265)
T ss_dssp             HHHHHGGGC--SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhccc--CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            999999632  211111     2355667788888899999999999988864

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.81  E-value=2.8e-06  Score=70.87  Aligned_cols=216  Identities=15%  Similarity=0.169  Sum_probs=164.5

Q ss_pred             hhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCch
Q 009514          228 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT  306 (533)
Q Consensus       228 ~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~  306 (533)
                      +..++..++++|++.-|.|+..|...+..+++.-+..      -+..+..|+-+++ ++.-..-.+.+.+++.++...++
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el------~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL------YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH------HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            4468999999999999999999999999998764432      2345556777765 66677778888999999865543


Q ss_pred             hHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514          307 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  386 (533)
Q Consensus       307 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~  386 (533)
                          ++ .+.+|.+..-..-.++.+|.+...+|..+... .|..-..+     ..-+..++.++|..-+..++..+..+.
T Consensus       104 ----~v-~~vVp~lfanyrigd~kikIn~~yaLeeIara-nP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alG  172 (253)
T 2db0_A          104 ----LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMG  172 (253)
T ss_dssp             ----HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred             ----HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHh-ChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence                22 36778888777778999999999999999874 34433333     345667888999888888888888887


Q ss_pred             cCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh
Q 009514          387 DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS  466 (533)
Q Consensus       387 ~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~  466 (533)
                      .+.   ..++..    .++.|..+|.+ .+.-|+.++.-+|.+++.-++..|..+.             .-++-+.++..
T Consensus       173 en~---~~yv~P----fLprL~aLL~D-~deiVRaSaVEtL~~lA~~npklRkii~-------------~kl~e~~D~S~  231 (253)
T 2db0_A          173 ENS---FKYVNP----FLPRIINLLHD-GDEIVRASAVEALVHLATLNDKLRKVVI-------------KRLEELNDTSS  231 (253)
T ss_dssp             TTT---HHHHGG----GHHHHHGGGGC-SSHHHHHHHHHHHHHHHTSCHHHHHHHH-------------HHHHHCCCSCH
T ss_pred             ccC---ccccCc----chHHHHHHHcC-cchhhhHHHHHHHHHHHHcCHHHHHHHH-------------HHHHHhcCcHH
Confidence            764   334443    67888777777 8888999999999999998887555443             23455678888


Q ss_pred             hHHHHHHHHHHhhcC
Q 009514          467 RLRTAAVWAVLNLTC  481 (533)
Q Consensus       467 ~v~~~a~~~L~~l~~  481 (533)
                      .+++....+|+.++.
T Consensus       232 lv~~~V~egL~rl~l  246 (253)
T 2db0_A          232 LVNKTVKEGISRLLL  246 (253)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            899999999998885

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.80  E-value=5.6e-05  Score=83.92  Aligned_cols=474  Identities=11%  Similarity=0.027  Sum_probs=250.7

Q ss_pred             HHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCch---HHHHHhhcC-ChHHHHHHHHHHHHHhcCCh------
Q 009514           20 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL---KRLTSLLGG-SLIQRDASLESIATIFKNNP------   89 (533)
Q Consensus        20 ~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i---~~L~~lL~~-~~~v~~~al~aL~~l~~~~~------   89 (533)
                      ..|+..+.+++..++..++.+|+.++...     .. ..|.   +.|++.+.+ +...+..++.+|..+++...      
T Consensus        88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d-----~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~  161 (960)
T 1wa5_C           88 KEIVPLMISLPNNLQVQIGEAISSIADSD-----FP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSD  161 (960)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHH-----ST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhh-----Cc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence            56677776667888888999998887421     11 3454   555555554 55778899999999986431      


Q ss_pred             hhhhhhccccCcccHHHHHHH-------HhcCCh---------hhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHh
Q 009514           90 EVVSQFVGPDTGRTLSCIIEI-------VKDRFA---------RTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL  153 (533)
Q Consensus        90 ~~~~~~~~~~~~~~i~~l~~l-------l~~~~~---------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l  153 (533)
                      +....+... -....+.++.+       +++...         .+...++++++.+....-..... ..-...++.+.++
T Consensus       162 ~~~~~l~~~-l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~-~~~~~~~~~~~~~  239 (960)
T 1wa5_C          162 ELFLEIKLV-LDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE-DNIQVGMGIFHKY  239 (960)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH-HTHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH-HHHHHHHHHHHHH
Confidence            111111000 01223333332       333222         12233556665544322111110 0113455666666


Q ss_pred             cCCC----------C------chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhc---CCCCchhHHHHHHHHHH
Q 009514          154 LDDP----------G------RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK---GSLHPRRFEGILLALAD  214 (533)
Q Consensus       154 l~~~----------~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~---~~~~~~~~~~a~~aL~~  214 (533)
                      +...          .      .++..++.++..+....+..-.... ...++...+.+.+   ...+..++..++..+..
T Consensus       240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~  318 (960)
T 1wa5_C          240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTA  318 (960)
T ss_dssp             HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred             HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence            6421          0      1345667777777654443211111 1223444454532   12345677888888888


Q ss_pred             hhccchhhhHhhhhhchHHHHH-----HhcC-----------------------CCCHHHHHHHHHHHHHHhhccccccc
Q 009514          215 MCSKLECCRSRCLSLQVLKLVV-----DALA-----------------------HDSSDVRSAACMCLRSVSRSIKNLSA  266 (533)
Q Consensus       215 l~~~~~~~~~~~~~~~~l~~l~-----~~L~-----------------------~~~~~v~~~a~~~L~~ls~~~~~~~~  266 (533)
                      ++.. +..+..+...+.++.++     ..+.                       +.....|.+|..+|..++...+.   
T Consensus       319 ~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---  394 (960)
T 1wa5_C          319 VTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---  394 (960)
T ss_dssp             HHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---
T ss_pred             HhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---
Confidence            7643 23232222123333333     3331                       11235788899999988876321   


Q ss_pred             hhhhhcCcHHHHHHhhc------CCCHHHHHHHHHHHHHHhcCCc--h----------hHHHHHHhCcHHHHHHhhcCC-
Q 009514          267 GSFMNETIVIPLVRLLD------DTSTAVQVAALGAISNIVVDFT--T----------RRSTFIRLGGVKLLVQLSKSM-  327 (533)
Q Consensus       267 ~~~~~~~~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~--~----------~~~~~~~~~~i~~L~~ll~~~-  327 (533)
                      .  .-..+++.+.+.+.      ++++..++.|..+++.++.+..  .          ....++.    ..++..+.++ 
T Consensus       395 ~--v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~  468 (960)
T 1wa5_C          395 L--VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNN  468 (960)
T ss_dssp             H--HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSS
T ss_pred             h--HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCC
Confidence            1  11223344444454      5688999999999999985321  0          1111111    1223334555 


Q ss_pred             --CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCc-------c-hHHHHH
Q 009514          328 --DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI-------N-SVEYIF  397 (533)
Q Consensus       328 --~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~-------~-~~~~i~  397 (533)
                        ++.+|..++|+++.++..-.++    . -...++.+++.|.+++..|+..|+++|.+++....       . ....+.
T Consensus       469 ~~~p~vr~~a~~~lg~~~~~~~~~----~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~  543 (960)
T 1wa5_C          469 IPHIILRVDAIKYIYTFRNQLTKA----Q-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS  543 (960)
T ss_dssp             CSCHHHHHHHHHHHHHTGGGSCHH----H-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT
T ss_pred             CCCceehHHHHHHHHHHHhhCCHH----H-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhh
Confidence              8899999999999998754322    1 22346778888888899999999999999986421       1 011122


Q ss_pred             hhcCchHHHHHHHhccCC----chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh----cc-CChhH
Q 009514          398 AEDGIILDAVGRQLRIAS----KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL----QS-NDSRL  468 (533)
Q Consensus       398 ~~~~~~~~~L~~~L~~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L----~~-~~~~v  468 (533)
                      ..-..+++.|..++....    +....+.++.+|+.++....+....++.        .+++.+...+    ++ .+...
T Consensus       544 p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--------~l~~~L~~~l~~~~~~~~~~~~  615 (960)
T 1wa5_C          544 NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--------QLLAQFIEIVTIMAKNPSNPRF  615 (960)
T ss_dssp             TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--------HHHHHHHHHHHHHTTSCCCHHH
T ss_pred             hhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHHHHHHHHhCCCCcHH
Confidence            211226666666666521    1113345555555544311111112221        2334444444    33 35567


Q ss_pred             HHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          469 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       469 ~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      +..+..+|+.++..   ..++....+ +..++|.+...++....+..+.+...+..+.+..
T Consensus       616 ~~~~~e~l~~l~~~---~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          616 THYTFESIGAILNY---TQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             HHHHHHHHHHHHHT---SCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc---CCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence            77788888887752   122222332 3446788888887666677777777777776553

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.79  E-value=1.6e-06  Score=72.20  Aligned_cols=216  Identities=19%  Similarity=0.165  Sum_probs=159.0

Q ss_pred             hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCCh
Q 009514          270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAED  348 (533)
Q Consensus       270 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~  348 (533)
                      ++..++..++.+|.++-+-|+..|...+.+++...++....+     +..|+.+++ +..-..-+....+++.++.-. |
T Consensus        29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-P  102 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-P  102 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-H
T ss_pred             hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC-H
Confidence            566788899999999999999999999999998877765433     455666654 555666666777888886533 2


Q ss_pred             HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHH
Q 009514          349 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG  428 (533)
Q Consensus       349 ~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~  428 (533)
                          .+++ +.++.+..=..-.+++++.+...+|..++..+|.....++.       -+..++++ ++..-+..++..++
T Consensus       103 ----e~v~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~r-------di~smlts-kd~~Dkl~aLnFi~  169 (253)
T 2db0_A          103 ----ELVK-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR-------DFMSMLSS-KNREDKLTALNFIE  169 (253)
T ss_dssp             ----HHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH-------HHHHHTSC-SSHHHHHHHHHHHH
T ss_pred             ----HHHH-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHH-------HHHHHhcC-CChHHHHHHHHHHH
Confidence                2222 23566666667779999999999999999888865554443       34456665 88888888888888


Q ss_pred             HhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc
Q 009514          429 NVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN  508 (533)
Q Consensus       429 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~  508 (533)
                      .+....   ...+         .-++|.|..+|.+.|.-||..|+.+|.+++..    . +..+.+     +..-++-++
T Consensus       170 alGen~---~~yv---------~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~----n-pklRki-----i~~kl~e~~  227 (253)
T 2db0_A          170 AMGENS---FKYV---------NPFLPRIINLLHDGDEIVRASAVEALVHLATL----N-DKLRKV-----VIKRLEELN  227 (253)
T ss_dssp             TCCTTT---HHHH---------GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS----C-HHHHHH-----HHHHHHHCC
T ss_pred             HHhccC---cccc---------CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc----C-HHHHHH-----HHHHHHHhc
Confidence            877543   2322         35779999999999999999999999999951    2 223332     223334457


Q ss_pred             CCCCcHHHHHHHHHHHHh
Q 009514          509 DPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       509 ~~~~~v~~~a~~aL~~~~  526 (533)
                      |++..|++.+.++|.++.
T Consensus       228 D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          228 DTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             CSCHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHH
Confidence            889999999999999874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.71  E-value=1.3e-06  Score=83.77  Aligned_cols=251  Identities=12%  Similarity=0.079  Sum_probs=158.8

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514          230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS  309 (533)
Q Consensus       230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~  309 (533)
                      .+...+++++.+++..+|.-..-.+.+++...+.   . +   =++..|.+=+.++++-++..|..+++++...  +..+
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~-i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~  138 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---V-I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ  138 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---G-G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---H-H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH
Confidence            4567788899999999999888888888765211   1 1   2456788888899999999999999999853  2221


Q ss_pred             HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514          310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~  389 (533)
                           ...+.+.+.+.+.++.+|.+|+.+..++... .|+    +++ +.++.+.+++.+.++-|+..|+.+|..+...+
T Consensus       139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence                 3456677888999999999999999999763 343    222 46888899999999999999999999998764


Q ss_pred             cchHHHHHhhcCchHHHHHHHhccC--CchhHHHHHHHHHHHhccCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh
Q 009514          390 INSVEYIFAEDGIILDAVGRQLRIA--SKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS  466 (533)
Q Consensus       390 ~~~~~~i~~~~~~~~~~L~~~L~~~--~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~  466 (533)
                      ..           .+..++..+...  .++-.+...+..+..+..++ +...            ..+++.+...|++.++
T Consensus       208 ~~-----------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~------------~~~~~~l~~~L~~~~~  264 (355)
T 3tjz_B          208 RL-----------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD------------SPLFDFIESCLRNKHE  264 (355)
T ss_dssp             HH-----------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------------------CCCCCSSH
T ss_pred             hH-----------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH------------HHHHHHHHHHHcCCCh
Confidence            32           223333333321  13444455555555555443 2222            2345677888899999


Q ss_pred             hHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcccC
Q 009514          467 RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSL  532 (533)
Q Consensus       467 ~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~~~  532 (533)
                      .|..+|+.+|..+...   ..  .  .+  ..++..|..++.++++.+|..|...|..+...-+++
T Consensus       265 aVvyEa~k~I~~l~~~---~~--~--~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~  321 (355)
T 3tjz_B          265 MVVYEAASAIVNLPGC---SA--K--EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA  321 (355)
T ss_dssp             HHHHHHHHHHTC--------------------CCCTHHHHHHSSSSSSHHHHHHCC----------
T ss_pred             HHHHHHHHHHHhccCC---CH--H--HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH
Confidence            9999999999988731   11  1  11  234567888888888898887776666665544443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.71  E-value=5.2e-06  Score=92.50  Aligned_cols=472  Identities=13%  Similarity=0.095  Sum_probs=248.3

Q ss_pred             ccchHHHHhhhc-CCCcchhHHHHHHHHHhhcC-----chhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCCh
Q 009514           16 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNP   89 (533)
Q Consensus        16 ~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~-----~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~   89 (533)
                      +++++.+..+|. +.+..+|..|+.+|.+....     ++....-.+...++.+...-.++..+|.+...+++.++...-
T Consensus        38 p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~  117 (971)
T 2x1g_F           38 PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHML  117 (971)
T ss_dssp             THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcc
Confidence            567788888886 45678899999999986532     222333334444555554433366889999999999875421


Q ss_pred             hhhhhhccccCcccHHHHHHHHhcC------ChhhHHHHHHHHHHhhhc----CCCcchh---hhhH---hhhHHHHHHh
Q 009514           90 EVVSQFVGPDTGRTLSCIIEIVKDR------FARTRLLASLCLIVIRNA----SPCYLQD---VGIK---TKLINNLLEL  153 (533)
Q Consensus        90 ~~~~~~~~~~~~~~i~~l~~ll~~~------~~~v~~~a~~~L~~l~~~----~~~~~~~---~~~~---~~~i~~L~~l  153 (533)
                      ..+        .+.++.++..++++      ++..+..+..+|..+...    .....+.   ..+.   ..+++.+.++
T Consensus       118 p~W--------p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~  189 (971)
T 2x1g_F          118 GEW--------PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERY  189 (971)
T ss_dssp             CC--------------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             ccc--------cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122        45678888888775      556777888888876642    1100010   0111   1233333344


Q ss_pred             cC--CCC-------chhhhHHHHHHhhhc--CCHHHHHHHHHcCcHHHHHHhhh--------------cCCCCchhHHHH
Q 009514          154 LD--DPG-------RVGDEASFAFSSLIA--EKEDMQKLAFEVNGVDKLYNHLQ--------------KGSLHPRRFEGI  208 (533)
Q Consensus       154 l~--~~~-------~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~~L~--------------~~~~~~~~~~~a  208 (533)
                      +.  +.+       .+...+..++.....  .-+..    .....++.+.. |.              +...+++.++.|
T Consensus       190 l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a  264 (971)
T 2x1g_F          190 LKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESC  264 (971)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHH
T ss_pred             HhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHH
Confidence            43  122       355566666654332  11110    11223444544 31              001236788999


Q ss_pred             HHHHHHhhccchh-hhHhhhhhchHHHHHH-------hcCCCC---HHHHHHHHHHHHHHhhccccccc---------hh
Q 009514          209 LLALADMCSKLEC-CRSRCLSLQVLKLVVD-------ALAHDS---SDVRSAACMCLRSVSRSIKNLSA---------GS  268 (533)
Q Consensus       209 ~~aL~~l~~~~~~-~~~~~~~~~~l~~l~~-------~L~~~~---~~v~~~a~~~L~~ls~~~~~~~~---------~~  268 (533)
                      +.++..+....+. .+...+ ...+|.++.       .+.+++   .......++.+..++......-.         ..
T Consensus       265 ~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  343 (971)
T 2x1g_F          265 LKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELS  343 (971)
T ss_dssp             HHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence            9999988864221 011111 122333332       224444   36777778887777643111100         00


Q ss_pred             hhhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCC---------chhH---HHHHHhCcHHHHHHhhcCCC---
Q 009514          269 FMNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDF---------TTRR---STFIRLGGVKLLVQLSKSMD---  328 (533)
Q Consensus       269 ~~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~---------~~~~---~~~~~~~~i~~L~~ll~~~~---  328 (533)
                      -.-..+++.|+.+..+     .+.++...+++....++...         ....   ...+ ...++.++..+..++   
T Consensus       344 ~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~~~~p~~~~  422 (971)
T 2x1g_F          344 ILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLY-AHLTRILVRKSEQPDEKS  422 (971)
T ss_dssp             HHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH-HHHHHHHHHHTSCCCTTT
T ss_pred             HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH-HHHHHHHHHHhcCCCccc
Confidence            0011344555555433     47788999998887776411         1111   1111 245555555443221   


Q ss_pred             ------------HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC-----CChhHHHHHHHHHHHhhcCCcc
Q 009514          329 ------------STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-----PEPSVQEQALALVRNLVDGRIN  391 (533)
Q Consensus       329 ------------~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~  391 (533)
                                  ...|..+..+|..++...+...-..+     ++.+...+.+     .++..++.++.+++.++.+..+
T Consensus       423 ~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~  497 (971)
T 2x1g_F          423 LAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGG  497 (971)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC---
T ss_pred             ccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcCh
Confidence                        13566666677666543321111111     2233333332     6888999999999999877543


Q ss_pred             hHHHHHhhcCchHHHHHHHhcc-CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHH
Q 009514          392 SVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRT  470 (533)
Q Consensus       392 ~~~~i~~~~~~~~~~L~~~L~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~  470 (533)
                      .....+.   .+++.+.. +.. ++++.|+..++|+++.++.--..+. ..+        ..+++.++..| +  +.++.
T Consensus       498 ~~~~~l~---~l~~~l~~-l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l--------~~vl~~l~~~l-~--~~v~~  561 (971)
T 2x1g_F          498 EEKRQIP---RLMRVLAE-IPYEKLNVKLLGTALETMGSYCNWLMENP-AYI--------PPAINLLVRGL-N--SSMSA  561 (971)
T ss_dssp             ---CHHH---HHHHHHHH-SCTTTSCHHHHHHHHHHHHHTHHHHC-----CH--------HHHHHHHHHHH-H--SSCHH
T ss_pred             hhhHHHH---HHHHHHHh-cCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH--------HHHHHHHHHHh-C--hHHHH
Confidence            2211111   13443322 231 2478899999999999885211111 222        34567777777 3  78999


Q ss_pred             HHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC--CCcHHHHHHHHHHHHhhh
Q 009514          471 AAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQFNSF  528 (533)
Q Consensus       471 ~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~aL~~~~~~  528 (533)
                      .|++++.+++.    .......... ..++..|.+++..+  +.+.+..+.+++..+...
T Consensus       562 ~A~~al~~l~~----~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          562 QATLGLKELCR----DCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHHHHHHH----HCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH----HHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            99999999994    1222222221 23456666777653  346777888888888654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.67  E-value=2.2e-06  Score=74.74  Aligned_cols=224  Identities=13%  Similarity=0.171  Sum_probs=159.0

Q ss_pred             cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhH
Q 009514          272 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK  351 (533)
Q Consensus       272 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~  351 (533)
                      .+.+..|..+|.+.|+.++..+..+|..+....+.......-...++.++.+++++|+.+...|+++|+.+..+.+....
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            34677899999999999999999999999875433333333357899999999999999999999999999886643221


Q ss_pred             HHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhc
Q 009514          352 EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA  431 (533)
Q Consensus       352 ~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~  431 (533)
                       ...  .....+..++.+++.-+++.+...+..+--..+.  .       .+++.+.+++. |.+.+++..|+.++.+++
T Consensus       112 -~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~--~-------~V~~~l~sLl~-Skd~~vK~agl~~L~eia  178 (265)
T 3b2a_A          112 -TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS--K-------LVRTYINELVV-SPDLYTKVAGFCLFLNML  178 (265)
T ss_dssp             -HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--H-------HHHHHHHHHHT-CSSHHHHHHHHHHHHHHG
T ss_pred             -HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--H-------HHHHHHHHHHh-CCChhHHHHHHHHHHHhh
Confidence             111  1246778888899999999999999988433221  1       16778888884 499999999999999999


Q ss_pred             cCCh--hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhh-c
Q 009514          432 TGKE--SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-N  508 (533)
Q Consensus       432 ~~~~--~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~  508 (533)
                      ..+.  ...            .+++.-+-.+|++.|+.+++-|..++-.+....-.+  +-...+.  ++....-.+. .
T Consensus       179 ~~S~D~~i~------------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~--~~~~~~~--~~~~~v~~l~~~  242 (265)
T 3b2a_A          179 NSSADSGHL------------TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE--NVKIELL--KISRIVDGLVYR  242 (265)
T ss_dssp             GGCSSCCCG------------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS--CCHHHHH--HHHHHHHHGGGC
T ss_pred             cccCCHHHH------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH--hHHHHHH--HHHHHHHHHHHh
Confidence            8443  222            344556788999999999999999999998532111  1111111  1122222333 3


Q ss_pred             CCCCcHHHHHHHHHHH
Q 009514          509 DPCLDVKLRVKTALEQ  524 (533)
Q Consensus       509 ~~~~~v~~~a~~aL~~  524 (533)
                      .+.|.++.+|...-..
T Consensus       243 ~~~~~~~~ka~~v~~~  258 (265)
T 3b2a_A          243 EGAPIIRLKAKKVSDL  258 (265)
T ss_dssp             SSCHHHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHHH
Confidence            5577788887654433

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.66  E-value=6.2e-07  Score=82.51  Aligned_cols=194  Identities=10%  Similarity=0.034  Sum_probs=138.6

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHH-Hhhccccccchhhhh-cCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCc-hhHH-
Q 009514          235 VVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMN-ETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFT-TRRS-  309 (533)
Q Consensus       235 l~~~L~~~~~~v~~~a~~~L~~-ls~~~~~~~~~~~~~-~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~-~~~~-  309 (533)
                      +.+.+++.+|.-|..|...|.. +....+..... -.+ ..++..|.+.+ ++.+..++..|+.+|+.++.+.. .... 
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~-~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKST-SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCT-TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccC-cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            4566789999999999999999 87543332210 011 24577788888 79999999999999999986443 2211 


Q ss_pred             HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514          310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~  389 (533)
                      ... .-.++.++..+++..+.++..+..++..++...++... .-.-...++.+...++++++.+++.++.+|..++...
T Consensus       100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~-~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS-SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCT-TCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccccc-CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            122 24689999999999999999999999888775532100 0000124677888899999999999999999998665


Q ss_pred             cchHHHHHhhc-CchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          390 INSVEYIFAED-GIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       390 ~~~~~~i~~~~-~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                      +.....+...- ..+++.+.+.+.+ ++++|+..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVND-TQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence            42112222222 2388999999987 899999999999988763

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.64  E-value=6.7e-09  Score=85.68  Aligned_cols=120  Identities=14%  Similarity=0.159  Sum_probs=91.0

Q ss_pred             hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhh
Q 009514          358 LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH  437 (533)
Q Consensus       358 ~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~  437 (533)
                      ...+.+..+|+++++.++..++++|.++...              .++.|.+.|.+ +++.|+..++++|+++..  +  
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~~--~--   72 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE--------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD--E--   72 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSST--------------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS--H--
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcCC--H--
Confidence            3567888999999999999999888766432              24677788886 899999999999998752  1  


Q ss_pred             HHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHH
Q 009514          438 KEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLR  517 (533)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~  517 (533)
                                    ..++.|+..|+++++.||..|+++|.++..               ..+++.|.++++++++.|+..
T Consensus        73 --------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~~~~vr~~  123 (131)
T 1te4_A           73 --------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETGTGFARKV  123 (131)
T ss_dssp             --------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSCCTHHHHH
T ss_pred             --------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCCCHHHHHH
Confidence                          234788888999999999999999999873               124788999999999999999


Q ss_pred             HHHHHHHH
Q 009514          518 VKTALEQF  525 (533)
Q Consensus       518 a~~aL~~~  525 (533)
                      |.+||.+|
T Consensus       124 A~~aL~~i  131 (131)
T 1te4_A          124 AVNYLETH  131 (131)
T ss_dssp             HHHHGGGC
T ss_pred             HHHHHHhC
Confidence            99998764

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.60  E-value=7.8e-07  Score=81.85  Aligned_cols=191  Identities=12%  Similarity=0.116  Sum_probs=134.5

Q ss_pred             HHhhhcCCCCchhHHHHHHHHHH-hhccchhhhHhhhh-hchHHHHHHhc-CCCCHHHHHHHHHHHHHHhhccc-cccc-
Q 009514          192 YNHLQKGSLHPRRFEGILLALAD-MCSKLECCRSRCLS-LQVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIK-NLSA-  266 (533)
Q Consensus       192 ~~~L~~~~~~~~~~~~a~~aL~~-l~~~~~~~~~~~~~-~~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls~~~~-~~~~-  266 (533)
                      .+.+.+.  +|.-|..++..|.. +....+.......+ ...+..+.+.+ ++.+..++..|+.+|..++.... ..-. 
T Consensus        22 ~~~l~s~--~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           22 QERITSS--KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHTCS--SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHhhcC--CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            3445444  58889999999999 86432222100111 24677888888 79999999999999999996543 1111 


Q ss_pred             hhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 009514          267 GSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA  346 (533)
Q Consensus       267 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~  346 (533)
                      .  +...++|.++..+.+..+.|+.++..++-.++....+......-...++.|...+++.++.+|..++.+|..++...
T Consensus       100 ~--y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 D--YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             H--HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             H--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            1  23457899999999999999999999998887643211100000136778888899999999999999999988654


Q ss_pred             Ch--HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514          347 ED--KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  386 (533)
Q Consensus       347 ~~--~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~  386 (533)
                      ..  ..-...+....++.+.+++.+++.++|..|..++..++
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            31  11111221346889999999999999999999998876

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.56  E-value=0.00013  Score=81.07  Aligned_cols=477  Identities=10%  Similarity=0.056  Sum_probs=242.5

Q ss_pred             ccchHHHHhhhcCC------CcchhHHHHHHHHHhhcCc-----h-hH----HHHHhcCchHHHHHhh----cC--Ch--
Q 009514           16 EENMEFLLSLLNNE------SENVSGLGASIISHSCKTS-----L-EQ----KLLFDAGVLKRLTSLL----GG--SL--   71 (533)
Q Consensus        16 ~~~i~~L~~lL~~~------~~~v~~~a~~~l~~~~~~~-----~-~~----~~i~~~g~i~~L~~lL----~~--~~--   71 (533)
                      ++.++.|+.+++++      ++...+.+..++..++++-     . .|    ..+.  ..++.++.++    ..  +.  
T Consensus       121 p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~--~~~~~vl~ll~~~l~~~~~~~~  198 (971)
T 2x1g_F          121 PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIA--KRVQLVIHTVERYLKLQMNRVW  198 (971)
T ss_dssp             -----HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH--TTHHHHHHHHHHHHHHHTTSCC
T ss_pred             cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccCCCC
Confidence            45778888888865      5668888999999887421     1 11    1121  1244444444    21  22  


Q ss_pred             -----HHHHHHHHHHHHHhc--CChhhhhhhccccCcccHHHHHHHHh----------------cCChhhHHHHHHHHHH
Q 009514           72 -----IQRDASLESIATIFK--NNPEVVSQFVGPDTGRTLSCIIEIVK----------------DRFARTRLLASLCLIV  128 (533)
Q Consensus        72 -----~v~~~al~aL~~l~~--~~~~~~~~~~~~~~~~~i~~l~~ll~----------------~~~~~v~~~a~~~L~~  128 (533)
                           .++..++.|+.....  ..|..   .    ....++.++. +.                ++++..+..|+.|+..
T Consensus       199 ~~~~~~~~~~al~~l~~~~~~~~ip~~---~----~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~  270 (971)
T 2x1g_F          199 DAEAYSNMNRAVKCVGTWIKNIGYTIE---G----CVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVN  270 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSCCCGG---G----HHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred             CccchhHHHHHHHHHHHHHhhCCcCcc---c----cccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHH
Confidence                 688889999876543  22211   1    1234555555 41                1456889999999999


Q ss_pred             hhhcCCCcchhhhhHhhhHHHHHHhc-------C-CC---CchhhhHHHHHHhhhcCCHHHHH-H---------HHHcCc
Q 009514          129 IRNASPCYLQDVGIKTKLINNLLELL-------D-DP---GRVGDEASFAFSSLIAEKEDMQK-L---------AFEVNG  187 (533)
Q Consensus       129 l~~~~~~~~~~~~~~~~~i~~L~~ll-------~-~~---~~~~~~a~~~L~~l~~~~~~~~~-~---------~~~~~~  187 (533)
                      +....+.+.....+ ...+|.++.+.       . ++   .+.....+..+..++......-. .         -.-...
T Consensus       271 i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  349 (971)
T 2x1g_F          271 IIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRI  349 (971)
T ss_dssp             HHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHH
Confidence            88743211111111 23445554432       2 22   24445556666666543322110 0         000122


Q ss_pred             HHHHHHhhhcC---CCCchhHHHHHHHHHHhhccc---------hhhhHhhhh--hchHHHHHHhcCCC--------C--
Q 009514          188 VDKLYNHLQKG---SLHPRRFEGILLALADMCSKL---------ECCRSRCLS--LQVLKLVVDALAHD--------S--  243 (533)
Q Consensus       188 l~~L~~~L~~~---~~~~~~~~~a~~aL~~l~~~~---------~~~~~~~~~--~~~l~~l~~~L~~~--------~--  243 (533)
                      ++.++.+....   ..++.+...++.....++...         +.....+..  ...++.++.-+.-+        +  
T Consensus       350 l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~  429 (971)
T 2x1g_F          350 VQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSD  429 (971)
T ss_dssp             HHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHH
T ss_pred             HHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHh
Confidence            34444433220   124667888888877765310         111111111  13455555555321        1  


Q ss_pred             -----HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 009514          244 -----SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDFTTRRSTFIR  313 (533)
Q Consensus       244 -----~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~  313 (533)
                           ...|..+..+|..++...+.   .  .-..+++.+-+.+.+     +++..++.++.+++.++.+......    
T Consensus       430 e~~~f~~~R~~~~~~l~~~~~~~~~---~--~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~----  500 (971)
T 2x1g_F          430 DLECFRCYRQDISDTFMYCYDVLND---Y--ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK----  500 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTT---H--HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH---H--HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh----
Confidence                 14667777788777654221   1  111222333333332     6788999999999999876543221    


Q ss_pred             hCcHHHHHHhh---c--CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          314 LGGVKLLVQLS---K--SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       314 ~~~i~~L~~ll---~--~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                       ..++.++.++   .  ++++.+|..++|+++.++...... . ..+ ...++.+++.+ +  +.++..|++++.+++..
T Consensus       501 -~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~-~~l-~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~  573 (971)
T 2x1g_F          501 -RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-P-AYI-PPAINLLVRGL-N--SSMSAQATLGLKELCRD  573 (971)
T ss_dssp             -CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CH-HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-H-HHH-HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH
Confidence             2233333322   3  347899999999999987643311 1 111 12355666666 3  78999999999999965


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhccC--
Q 009514          389 RINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSN--  464 (533)
Q Consensus       389 ~~~~~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~--  464 (533)
                      ...   .+...-+.+++.+...+... .+.+.+..+..+++.++... ++.....++.++    ..++..+...++..  
T Consensus       574 ~~~---~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll----~~l~~~l~~~~~~~~~  646 (971)
T 2x1g_F          574 CQL---QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV----SPCFEELQAICQADSK  646 (971)
T ss_dssp             CHH---HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH----HHHHHHHHHHHTC---
T ss_pred             HHH---hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----HHHHHHHHHHHhcCCC
Confidence            433   23332222667776767652 24577888888888776532 233444443211    12223333333333  


Q ss_pred             ChhHHHHHHHHHHhhcC---CCCCC----c-----HHHHHHHHHCCcHHHHHhhhcC--CCCcHHHHHHHHHHHHhh
Q 009514          465 DSRLRTAAVWAVLNLTC---SSSPG----S-----SGRLVKLHDAGIVSHVKNMVND--PCLDVKLRVKTALEQFNS  527 (533)
Q Consensus       465 ~~~v~~~a~~~L~~l~~---~~~~~----~-----~~~~~~l~~~g~~~~L~~ll~~--~~~~v~~~a~~aL~~~~~  527 (533)
                      +.+.+.....++..++.   .-...    .     .+.... ....+.+.+..+++.  .+.++.+++..+++++..
T Consensus       647 ~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          647 TPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            33334444444433331   00000    0     011111 123467777777643  255888999999988654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.56  E-value=0.00013  Score=80.96  Aligned_cols=437  Identities=9%  Similarity=0.017  Sum_probs=221.9

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCch-------hHHHH--HhcCchHHHHHh-------hcCC----hHHH-
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSL-------EQKLL--FDAGVLKRLTSL-------LGGS----LIQR-   74 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~-------~~~~i--~~~g~i~~L~~l-------L~~~----~~v~-   74 (533)
                      ++.++.|+.+++++++..++.+..++..+++...       .+..+  .-....++++++       +..+    ..++ 
T Consensus       122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  201 (960)
T 1wa5_C          122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNI  201 (960)
T ss_dssp             TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHH
T ss_pred             hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            6788999999999999999999999999986432       11111  112234444443       3321    1122 


Q ss_pred             -----HHHHHHHHHHh-cCChhhhhhhccccCcccHHHHHHHHhcC------C---------hhhHHHHHHHHHHhhhcC
Q 009514           75 -----DASLESIATIF-KNNPEVVSQFVGPDTGRTLSCIIEIVKDR------F---------ARTRLLASLCLIVIRNAS  133 (533)
Q Consensus        75 -----~~al~aL~~l~-~~~~~~~~~~~~~~~~~~i~~l~~ll~~~------~---------~~v~~~a~~~L~~l~~~~  133 (533)
                           ..+++++..+. .+.++....-    -...++.+...+...      +         ..++..+..++..+....
T Consensus       202 ~~~~~~~~~k~~~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~  277 (960)
T 1wa5_C          202 LFDVLLVLIKLYYDFNCQDIPEFFEDN----IQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRY  277 (960)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCHHHHHT----HHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhccchHHHHHH----HHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence                 23455555543 2223221110    011223333444221      1         245677788888777643


Q ss_pred             CCcchhhhhHhhhHHHHHHhcC------CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHH-----Hhhhc-----
Q 009514          134 PCYLQDVGIKTKLINNLLELLD------DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-----NHLQK-----  197 (533)
Q Consensus       134 ~~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-----~~L~~-----  197 (533)
                      +....  -.-...++..++++.      .++.+...+...+..++... .....+.....++.++     ..+.-     
T Consensus       278 ~~~f~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~-~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~  354 (960)
T 1wa5_C          278 EDVFG--PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP-KYFEIFNNESAMNNITEQIILPNVTLREEDV  354 (960)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH-HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGT
T ss_pred             HHHHH--HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH-hHHHHHcCchHHHHHHHHHhHHhcCCCHHHH
Confidence            32111  112345555566553      12345566777776665432 1111110001223233     22210     


Q ss_pred             ----------------CCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC------CCCHHHHHHHHHHHH
Q 009514          198 ----------------GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA------HDSSDVRSAACMCLR  255 (533)
Q Consensus       198 ----------------~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~------~~~~~v~~~a~~~L~  255 (533)
                                      .+.....|..|...|..++..-+   +.+ -..+++.+.+.+.      +.+|..|.+|..+++
T Consensus       355 e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~alg  430 (960)
T 1wa5_C          355 ELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFT  430 (960)
T ss_dssp             TTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhH-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence                            00112356677777777764322   111 1123444444454      568899999999999


Q ss_pred             HHhhccccccchhhh----hcCcHHH----HHHhhcCC---CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514          256 SVSRSIKNLSAGSFM----NETIVIP----LVRLLDDT---STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS  324 (533)
Q Consensus       256 ~ls~~~~~~~~~~~~----~~~~i~~----Lv~lL~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll  324 (533)
                      .++......... ..    ...+.+.    ++..+.++   ++-+|..|+|+++.++....+   ... ...++.+++.+
T Consensus       431 aia~~~~~~~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~---~~l-~~~l~~l~~~L  505 (960)
T 1wa5_C          431 ALAINGNITNAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK---AQL-IELMPILATFL  505 (960)
T ss_dssp             HHHBSSCCBTTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH---HHH-HHHHHHHHHHT
T ss_pred             HHHHHhccccCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH---HHH-HHHHHHHHHHh
Confidence            997531100000 00    0022232    33344666   899999999999999865421   222 35678888888


Q ss_pred             cCCCHHHHHHHHHHHHHhhccCC------hH-hHHHHHH--hhcHHHHHhhhCCCC---h--hHHHHHHHHHHHhhcCCc
Q 009514          325 KSMDSTIRLNALRALRNLIFLAE------DK-CKEEIFM--ELTASLLASLICDPE---P--SVQEQALALVRNLVDGRI  390 (533)
Q Consensus       325 ~~~~~~~~~~al~aL~~l~~~~~------~~-~~~~i~~--~~~~~~l~~lL~~~~---~--~v~~~a~~~L~~l~~~~~  390 (533)
                      .+++..++.+|++||.+++...+      ++ .+..+..  ...++.+..++....   .  ...+.++.++..++....
T Consensus       506 ~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~  585 (960)
T 1wa5_C          506 QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE  585 (960)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred             CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH
Confidence            88889999999999999886321      11 1111111  223555666665531   1  123455555555543211


Q ss_pred             chHHHHHhhcCchHHHHHHHh----ccCCchhHHHHHHHHHHHhccC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCC
Q 009514          391 NSVEYIFAEDGIILDAVGRQL----RIASKAEIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSND  465 (533)
Q Consensus       391 ~~~~~i~~~~~~~~~~L~~~L----~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~  465 (533)
                      +.+.   .....+++.+...+    .+..++.....++.+|+.++.. .++....+.        ..++|.+...|....
T Consensus       586 ~~~~---p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--------~~~~p~~~~iL~~~~  654 (960)
T 1wa5_C          586 DSIQ---PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--------DSMMPTFLTVFSEDI  654 (960)
T ss_dssp             TTTG---GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--------HHHHHHHHHHHHTTC
T ss_pred             Hhhh---hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--------HHHHHHHHHHHHhhh
Confidence            1111   10001333333333    3323456666677777777764 333333333        456678888887654


Q ss_pred             hhHHHHHHHHHHhh
Q 009514          466 SRLRTAAVWAVLNL  479 (533)
Q Consensus       466 ~~v~~~a~~~L~~l  479 (533)
                      .+....+...+..+
T Consensus       655 ~~~~~~~~~i~~~l  668 (960)
T 1wa5_C          655 QEFIPYVFQIIAFV  668 (960)
T ss_dssp             TTTHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHH
Confidence            45555555544444

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.50  E-value=1.6e-06  Score=83.13  Aligned_cols=274  Identities=15%  Similarity=0.106  Sum_probs=148.7

Q ss_pred             HHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchh
Q 009514          189 DKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS  268 (533)
Q Consensus       189 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~  268 (533)
                      ...++++.+.  +...+.-.-..+..++...++.   +   =++..+.+=++++++-+|-.|.++++++...  .     
T Consensus        71 ~~v~kl~~s~--d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~-----  135 (355)
T 3tjz_B           71 FAMTKLFQSN--DPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--T-----  135 (355)
T ss_dssp             HHHHGGGGCC--CHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--T-----
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--H-----
Confidence            3455666554  3556665555666655432221   1   3467778888899999999999999988543  1     


Q ss_pred             hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh
Q 009514          269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED  348 (533)
Q Consensus       269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~  348 (533)
                       .-..+.+.+-+.+.+.++-|+..|+-+...+....++    ++ .++++.+-+++.+.++-+..+|+.+|..+.... .
T Consensus       136 -m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe----~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~  208 (355)
T 3tjz_B          136 -MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD----VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-R  208 (355)
T ss_dssp             -THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH----HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-H
T ss_pred             -HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-h
Confidence             1234566778888999999999999999999866554    33 378999999999999999999999999987532 1


Q ss_pred             HhHHHHHHhhcHHHHHhhhCCC---ChhHHHHHHHHHHHhhcCC-cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHH
Q 009514          349 KCKEEIFMELTASLLASLICDP---EPSVQEQALALVRNLVDGR-INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM  424 (533)
Q Consensus       349 ~~~~~i~~~~~~~~l~~lL~~~---~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~  424 (533)
                         .      .+..++.-+...   ++-.+...++.++.+...+ +...       ..+++.+...|++ .++.|.-+|+
T Consensus       209 ---~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~-------~~~~~~l~~~L~~-~~~aVvyEa~  271 (355)
T 3tjz_B          209 ---L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD-------SPLFDFIESCLRN-KHEMVVYEAA  271 (355)
T ss_dssp             ---H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------------CCCCC-SSHHHHHHHH
T ss_pred             ---H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH-------HHHHHHHHHHHcC-CChHHHHHHH
Confidence               1      122223322221   3444444444444444433 2111       1156677777776 7889999999


Q ss_pred             HHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHH
Q 009514          425 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVK  504 (533)
Q Consensus       425 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~  504 (533)
                      .++..+......    ..        ..+++.+..+|.++++++|..|...|..+...    .+   ..+.  ..-.-+.
T Consensus       272 k~I~~l~~~~~~----~~--------~~a~~~L~~fLss~d~niryvaLr~L~~l~~~----~P---~~v~--~~n~~ie  330 (355)
T 3tjz_B          272 SAIVNLPGCSAK----EL--------APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK----HP---SAVT--ACNLDLE  330 (355)
T ss_dssp             HHHTC-----------------------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------
T ss_pred             HHHHhccCCCHH----HH--------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----Cc---HHHH--HHHHHHH
Confidence            999887642211    22        23446778889999999999999999988852    11   1121  2345778


Q ss_pred             hhhcCCCCcHHHHHHHHH
Q 009514          505 NMVNDPCLDVKLRVKTAL  522 (533)
Q Consensus       505 ~ll~~~~~~v~~~a~~aL  522 (533)
                      ++++|++..+.-.|.+.|
T Consensus       331 ~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          331 NLVTDANRSIATLAITTL  348 (355)
T ss_dssp             ------------------
T ss_pred             HHccCCcHhHHHHHHHHh
Confidence            888888888766655544

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.47  E-value=4.6e-08  Score=80.59  Aligned_cols=121  Identities=12%  Similarity=0.089  Sum_probs=91.1

Q ss_pred             hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514          314 LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV  393 (533)
Q Consensus       314 ~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  393 (533)
                      ...++.+..+++++++.+|..|+++|+++..  .           .++.|+++|+++++.++..++++|.++...  .  
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~--~--   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQDE--R--   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS--T-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCSH--H--
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCCH--H--
Confidence            4567888999999999999999999987632  1           257888999999999999999999988631  1  


Q ss_pred             HHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHH
Q 009514          394 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV  473 (533)
Q Consensus       394 ~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~  473 (533)
                               .++.|...|.+ +++.|+..++++|+++..                  ...++.|+.+++++++.+|..|+
T Consensus        74 ---------a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~------------------~~a~~~L~~~l~d~~~~vr~~A~  125 (131)
T 1te4_A           74 ---------AVEPLIKLLED-DSGFVRSGAARSLEQIGG------------------ERVRAAMEKLAETGTGFARKVAV  125 (131)
T ss_dssp             ---------HHHHHHHHHHH-CCTHHHHHHHHHHHHHCS------------------HHHHHHHHHHTTSCCTHHHHHHH
T ss_pred             ---------HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc------------------HHHHHHHHHHHhCCCHHHHHHHH
Confidence                     56777777776 899999999999998752                  23447888999999999999999


Q ss_pred             HHHHhh
Q 009514          474 WAVLNL  479 (533)
Q Consensus       474 ~~L~~l  479 (533)
                      ++|.++
T Consensus       126 ~aL~~i  131 (131)
T 1te4_A          126 NYLETH  131 (131)
T ss_dssp             HHGGGC
T ss_pred             HHHHhC
Confidence            998764

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.47  E-value=6.9e-05  Score=73.47  Aligned_cols=343  Identities=13%  Similarity=0.125  Sum_probs=190.5

Q ss_pred             cccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCC--cchhhhhHh-hhHHHHHH-hcCCCCc-hhhhHHHHHHhhhcC
Q 009514          101 GRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPC--YLQDVGIKT-KLINNLLE-LLDDPGR-VGDEASFAFSSLIAE  174 (533)
Q Consensus       101 ~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~-~~i~~L~~-ll~~~~~-~~~~a~~~L~~l~~~  174 (533)
                      +..+..++.+++ ..+.++.......+..+....+.  .....+... .....+.. ++..++. ....+..+++.++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            456677888777 45667777777777777776541  011111111 11111222 2322222 344555555555422


Q ss_pred             C---HHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhc--hHHHHHHhcC----C----
Q 009514          175 K---EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ--VLKLVVDALA----H----  241 (533)
Q Consensus       175 ~---~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~--~l~~l~~~L~----~----  241 (533)
                      .   ++.....+..   +.++..|.+.+ +...+..++.+|..+... +..|..+.+.+  .+|.+++++.    +    
T Consensus       156 ~~~~~~~l~~l~~~---~~~~~~L~~~~-~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~  230 (480)
T 1ho8_A          156 GLHNVKLVEKLLKN---NNLINILQNIE-QMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLAT  230 (480)
T ss_dssp             TTCCHHHHHHHHHC---HHHHHHHHCTT-CHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred             CCccHhHHHHHhhh---HHHHHHhcccc-CCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence            2   1111111110   13555555431 233455688888888764 57888887653  4676655433    1    


Q ss_pred             -------C--CHHHHHHHHHHHHHHhhccccccchhhhhcCcH--HHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchh--
Q 009514          242 -------D--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV--IPLVRLLD-DTSTAVQVAALGAISNIVVDFTTR--  307 (533)
Q Consensus       242 -------~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i--~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~--  307 (533)
                             +  ..++++.++-|++-++++.+ .... +...++.  +.|+.+++ +..+++-.-++.+|.|+.......  
T Consensus       231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~-l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~  308 (480)
T 1ho8_A          231 RIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANE-LVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHK  308 (480)
T ss_dssp             --------CCHHHHHHHHHHHHHHHTTSHH-HHHH-HHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred             ccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHH-HHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhh
Confidence                   1  34678999999999999843 3333 4444433  56777776 567899999999999999754211  


Q ss_pred             ---HHHHHHhCcHHHHHHhhcC---CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHH
Q 009514          308 ---RSTFIRLGGVKLLVQLSKS---MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALAL  381 (533)
Q Consensus       308 ---~~~~~~~~~i~~L~~ll~~---~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~  381 (533)
                         .+.++..++++ ++..+..   .|+++... +..|.....       +.          ++-+.    ..-+.....
T Consensus       309 ~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~ed-l~~L~e~L~-------~~----------~~~lt----sfDeY~~El  365 (480)
T 1ho8_A          309 KVIKQLLLLGNALP-TVQSLSERKYSDEELRQD-ISNLKEILE-------NE----------YQELT----SFDEYVAEL  365 (480)
T ss_dssp             HHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHH-HHHHHHHHH-------HH----------HHTCC----HHHHHHHHH
T ss_pred             hHHHHHHHHccchH-HHHHHhhCCCCcHHHHHH-HHHHHHHHH-------HH----------HHhcc----cHHHHHHHH
Confidence               22333345544 4444443   34554332 112211111       00          00000    011112222


Q ss_pred             HHHhhcCCcchHH-HHHhhc--------CchHHHHHHHhcc---------CCchhHHHHHHHHHHHhccCChhhHHHHHH
Q 009514          382 VRNLVDGRINSVE-YIFAED--------GIILDAVGRQLRI---------ASKAEIEIQGMYVLGNVATGKESHKEAVMD  443 (533)
Q Consensus       382 L~~l~~~~~~~~~-~i~~~~--------~~~~~~L~~~L~~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  443 (533)
                      .+.....+|-+.. .++.++        ..++..|.++|.+         +.++.+..-||+-|+.++...|..+. +++
T Consensus       366 ~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~-i~~  444 (480)
T 1ho8_A          366 DSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID-VLD  444 (480)
T ss_dssp             HHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH-HHH
T ss_pred             hcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhH-HHH
Confidence            2222233332221 333332        2377888888874         34788899999999999987775444 555


Q ss_pred             HhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          444 QLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       444 ~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      +      .|+-..+++++.++|++||.+|..|+..+.
T Consensus       445 ~------lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          445 K------TGGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             H------HSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             H------cCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            3      788899999999999999999999988765

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.43  E-value=0.00022  Score=79.35  Aligned_cols=468  Identities=13%  Similarity=0.099  Sum_probs=240.2

Q ss_pred             ccchHHHHhhhc-CCCcchhHHHHHHHHHhhcC-----c-hhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcC-
Q 009514           16 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----S-LEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKN-   87 (533)
Q Consensus        16 ~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~-----~-~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~-   87 (533)
                      +++++.+..+|. +.+..+|..|+.+|.+....     + +.+..+ +...++.+...-.++..+|.+...+++.++.. 
T Consensus        56 p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i-r~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~  134 (963)
T 2x19_B           56 PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESL-KAQLFTQITRFASGSKIVLTRLCVALASLALSM  134 (963)
T ss_dssp             TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH-HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            467777888886 34667888888888875532     1 223333 33344444442223567888888888888643 


Q ss_pred             ChhhhhhhccccCcccHHHHHHHHhc-----CChhhHHHHHHHHHHhhhcC-CCc--------chhhhh--HhhhHHHHH
Q 009514           88 NPEVVSQFVGPDTGRTLSCIIEIVKD-----RFARTRLLASLCLIVIRNAS-PCY--------LQDVGI--KTKLINNLL  151 (533)
Q Consensus        88 ~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~~l~~~~-~~~--------~~~~~~--~~~~i~~L~  151 (533)
                      .|+.+        .+.++.++..+++     +++..+..+..+|..+.... ..+        .++.+.  -..+++.+.
T Consensus       135 ~p~~W--------p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~  206 (963)
T 2x19_B          135 MPDAW--------PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLE  206 (963)
T ss_dssp             TTTTS--------TTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHH
T ss_pred             Ccccc--------chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23333        4578888888876     35556778888888776421 000        010010  123444455


Q ss_pred             HhcCCCC---chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh-hHhhh
Q 009514          152 ELLDDPG---RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC-RSRCL  227 (533)
Q Consensus       152 ~ll~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~-~~~~~  227 (533)
                      +++.+..   .+...+..++.....-....   ......++.+.+.+.    +++.++.++.++..+....+.. ....+
T Consensus       207 ~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~---~~~~~ll~~l~~~l~----~~~~~~~a~~~l~~i~~~~~~~~~~~~~  279 (963)
T 2x19_B          207 QLLQQPSSPSCVRQKVLKCFSSWVQLEVPL---QDCEALIQAAFAALQ----DSELFDSSVEAIVNAISQPDAQRYVNTL  279 (963)
T ss_dssp             HHHSCTTCCHHHHHHHHHHHHHHHTSSCCG---GGTHHHHHHHHHHTT----STTTHHHHHHHHHHHHTCTTGGGCHHHH
T ss_pred             HHHhCCCCchHHHHHHHHHHHHHHcCCCCc---ccchHHHHHHHHHhC----CchHHHHHHHHHHHHHcccccccCHHHH
Confidence            5554321   24445555553322100000   000122455555553    3668899999999987642111 11111


Q ss_pred             ----h--hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc----hhhhhcCcHHHHHHhhcC-----CCHHHHHH
Q 009514          228 ----S--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA----GSFMNETIVIPLVRLLDD-----TSTAVQVA  292 (533)
Q Consensus       228 ----~--~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~----~~~~~~~~i~~Lv~lL~~-----~~~~v~~~  292 (533)
                          .  .+..+.+.+.+..++.......+.++..++......-.    ..-.-..+++.++.+..+     .+.++...
T Consensus       280 ~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~  359 (963)
T 2x19_B          280 LKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSL  359 (963)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGG
T ss_pred             HHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhh
Confidence                0  01122222233345556666667777776543111000    000001344455555554     35556666


Q ss_pred             HHHHHHHHhcCC--------chhHH---HHHHhCcHHHHHHhhcCCCH---------------HHHHHHHHHHHHhhccC
Q 009514          293 ALGAISNIVVDF--------TTRRS---TFIRLGGVKLLVQLSKSMDS---------------TIRLNALRALRNLIFLA  346 (533)
Q Consensus       293 a~~aL~nl~~~~--------~~~~~---~~~~~~~i~~L~~ll~~~~~---------------~~~~~al~aL~~l~~~~  346 (533)
                      +......++...        .....   ..+ ...++.++..+..+++               ..|..+..+|..++...
T Consensus       360 ~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~  438 (963)
T 2x19_B          360 TLTFWYTLQDDILSFEAEKQAVYQQVYRPVY-FQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEML  438 (963)
T ss_dssp             GHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            666655555411        01111   111 1234444444433221               12444444554443221


Q ss_pred             ChHhHHHHHHhhcHHHHHhhh----CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC--CchhHH
Q 009514          347 EDKCKEEIFMELTASLLASLI----CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA--SKAEIE  420 (533)
Q Consensus       347 ~~~~~~~i~~~~~~~~l~~lL----~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~--~~~~v~  420 (533)
                      +.    .++. ...+.+...+    .+.++..++.++++++.++.+..+...      . .++.+...+..-  +++.++
T Consensus       439 ~~----~~l~-~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~------~-~l~~l~~~l~~l~~~~~~vr  506 (963)
T 2x19_B          439 GA----ELLS-NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYS------D-VVPGLIGLIPRISISNVQLA  506 (963)
T ss_dssp             TH----HHHH-HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCC------S-HHHHHHHHGGGSCCCSHHHH
T ss_pred             cH----HHHH-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhh------H-HHHHHHHHHHhCCCCcHHHH
Confidence            11    1111 1233444444    567899999999999999977543111      1 233333333211  467899


Q ss_pred             HHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcH
Q 009514          421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIV  500 (533)
Q Consensus       421 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~  500 (533)
                      ..++|+++.++.--..+. ..+        ..+++.++..|++  +.|+..|++++.+++...    ........ ..++
T Consensus       507 ~~~~~~l~~~~~~l~~~~-~~l--------~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~----~~~l~p~~-~~il  570 (963)
T 2x19_B          507 DTVMFTIGALSEWLADHP-VMI--------NSVLPLVLHALGN--PELSVSSVSTLKKICREC----KYDLPPYA-ANIV  570 (963)
T ss_dssp             HHHHHHHHHTHHHHHHCH-HHH--------TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT----GGGCTTTH-HHHH
T ss_pred             HHHHHHHHHHHHHHHhCH-HHH--------HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH----HHHHHhhH-HHHH
Confidence            999999999875211111 233        4677888888865  789999999999999411    11100000 1234


Q ss_pred             HHHHhhhcCC--CCcHHHHHHHHHHHHhhh
Q 009514          501 SHVKNMVNDP--CLDVKLRVKTALEQFNSF  528 (533)
Q Consensus       501 ~~L~~ll~~~--~~~v~~~a~~aL~~~~~~  528 (533)
                      ..|.+++..+  +.+.+..+.+|++.+...
T Consensus       571 ~~l~~~l~~~~~~~~~~~~~~eai~~i~~~  600 (963)
T 2x19_B          571 AVSQDVLMKQIHKTSQCMWLMQALGFLLSA  600 (963)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence            4555555542  346777788888887654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.41  E-value=0.00041  Score=77.72  Aligned_cols=432  Identities=11%  Similarity=0.046  Sum_probs=222.1

Q ss_pred             ccchHHHHhhhc-CCCcchhHHHHHHHHHhhcC-----chhHHHHHhcCchHHHHHhhcC------ChHHHHHHHHHHHH
Q 009514           16 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIAT   83 (533)
Q Consensus        16 ~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~-----~~~~~~i~~~g~i~~L~~lL~~------~~~v~~~al~aL~~   83 (533)
                      ++.+..+..+|. +.+..+|..|+.+|-+....     +.....-.+...++.+...-.+      +..+|.+...+++.
T Consensus        47 p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~  126 (1049)
T 3m1i_C           47 PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQ  126 (1049)
T ss_dssp             TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHH
Confidence            345555666664 34566777777777765432     1222222222233333332211      24567777777777


Q ss_pred             HhcC-ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC----Cc---ch-----hhhhH--hhhHH
Q 009514           84 IFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP----CY---LQ-----DVGIK--TKLIN  148 (533)
Q Consensus        84 l~~~-~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~---~~-----~~~~~--~~~i~  148 (533)
                      ++.. -|+.+        .+.++.++..++ .++..+..+..+|..+...-.    ..   .+     +.+..  ..+++
T Consensus       127 Ia~~~~p~~W--------p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~  197 (1049)
T 3m1i_C          127 ILKQEWPQNW--------PEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFK  197 (1049)
T ss_dssp             HHHHHTTTTC--------TTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCcccc--------hHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            7643 23332        457888888886 455556667777776653211    00   00     11111  12233


Q ss_pred             HHHHhcCC--CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccc--hh---
Q 009514          149 NLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL--EC---  221 (533)
Q Consensus       149 ~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~--~~---  221 (533)
                      .+.+++.+  +..++..+..++......-+.  ..+.+...++.+.+.+..   ++.++..++.+|..+....  +.   
T Consensus       198 ~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~~  272 (1049)
T 3m1i_C          198 LCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDL  272 (1049)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchhh
Confidence            33444442  235667777777665443221  123344555666633332   3678899999998887642  11   


Q ss_pred             hhHhhhh--hchHHHHHH-h-------------cCCCCHHHHHHHHHHHHHHhhccccc------cchhhhhcCcHHHHH
Q 009514          222 CRSRCLS--LQVLKLVVD-A-------------LAHDSSDVRSAACMCLRSVSRSIKNL------SAGSFMNETIVIPLV  279 (533)
Q Consensus       222 ~~~~~~~--~~~l~~l~~-~-------------L~~~~~~v~~~a~~~L~~ls~~~~~~------~~~~~~~~~~i~~Lv  279 (533)
                      ....+..  .+.+..+.. +             -.+.+.++....++.+..+.......      ...  .-..+++.++
T Consensus       273 ~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~l~~~l~~ll  350 (1049)
T 3m1i_C          273 IKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE--LLLNAHQYLI  350 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHH--HHHHHHHHHH
Confidence            1111110  122222211 1             12234555556666665554321100      000  0123455566


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhc----CC--chhHHHHHHhCcHHHHHHhhcCC-------------------CH---HH
Q 009514          280 RLLDDTSTAVQVAALGAISNIVV----DF--TTRRSTFIRLGGVKLLVQLSKSM-------------------DS---TI  331 (533)
Q Consensus       280 ~lL~~~~~~v~~~a~~aL~nl~~----~~--~~~~~~~~~~~~i~~L~~ll~~~-------------------~~---~~  331 (533)
                      .....++.++...|......++.    ..  ......++ ...++.++..+..+                   +.   ..
T Consensus       351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~  429 (1049)
T 3m1i_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL  429 (1049)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence            66667788998888877777764    11  11111222 23445555444221                   11   22


Q ss_pred             HHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcCCcchHH-HHHhhcCchHHHHH
Q 009514          332 RLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVE-YIFAEDGIILDAVG  408 (533)
Q Consensus       332 ~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~i~~~~~~~~~~L~  408 (533)
                      +..+..+|..++.-. +   ..++ ....+.+.+.+.  +.++..++.++++++.++........ .++.   .+++.+.
T Consensus       430 ~~~~~~~L~~l~~~~-~---~~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~---~v~~~l~  501 (1049)
T 3m1i_C          430 YKSEREVLVYLTHLN-V---IDTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV---TVIKDLL  501 (1049)
T ss_dssp             HHHHHHHHHHHHHHC-H---HHHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH---HHHHHHH
T ss_pred             HHHHHHHHHHHHccC-H---HHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH---HHHHHHH
Confidence            444555555554311 1   1111 122344444554  46889999999999999865432211 1111   1455554


Q ss_pred             HHhcc----CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          409 RQLRI----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       409 ~~L~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      .+...    ++.+-++..++|+++.++.-...+ ...+        ..+++.++..+.++++.|+..|++++.+++.
T Consensus       502 ~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l--------~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~  569 (1049)
T 3m1i_C          502 DLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFL--------RTVILKLFEFMHETHEGVQDMACDTFIKIVQ  569 (1049)
T ss_dssp             HHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHH--------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            43221    133455667999999877421111 1222        3566788888888899999999999999995

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.41  E-value=0.00026  Score=78.71  Aligned_cols=452  Identities=9%  Similarity=0.016  Sum_probs=234.5

Q ss_pred             hcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhhhccccCccc
Q 009514           26 LNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT  103 (533)
Q Consensus        26 L~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~  103 (533)
                      ..+++...+..|-..|..+-..+         ++.+.+..+|.+  +..+|..|+..|.+....+   +..+.. .....
T Consensus        34 ~~~~~~~~r~~A~~~L~~~~~~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~---w~~l~~-~~~~~  100 (963)
T 2x19_B           34 YYDPNIENKNLAQKWLMQAQVSP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRY---WSDIPT-DQYES  100 (963)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHC---GGGSCG-GGHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhcCH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhC---HHhCCH-HHHHH
Confidence            44567777888887877765433         455667777764  5689999999998865322   111110 01112


Q ss_pred             HH-HHHHHHhc---CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC------CCchhhhHHHHHHhhhc
Q 009514          104 LS-CIIEIVKD---RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD------PGRVGDEASFAFSSLIA  173 (533)
Q Consensus       104 i~-~l~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~a~~~L~~l~~  173 (533)
                      +. .++..+.+   .++.+|...+.++..++...-   .  ..+.+.++.|++.++.      +......+..+|..+.+
T Consensus       101 ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~---p--~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~e  175 (963)
T 2x19_B          101 LKAQLFTQITRFASGSKIVLTRLCVALASLALSMM---P--DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPE  175 (963)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHT---T--TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC---c--cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHH
Confidence            22 24444433   357889888999998877531   1  1145788999998874      22244556666666653


Q ss_pred             CC-----HHHHHHHHH---cCcHHH----HHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC
Q 009514          174 EK-----EDMQKLAFE---VNGVDK----LYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH  241 (533)
Q Consensus       174 ~~-----~~~~~~~~~---~~~l~~----L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~  241 (533)
                      +.     ...++....   ...++.    +..++.+...+..++..++.++.....-...   .......++.+.+++. 
T Consensus       176 e~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~---~~~~~~ll~~l~~~l~-  251 (963)
T 2x19_B          176 EFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVP---LQDCEALIQAAFAALQ-  251 (963)
T ss_dssp             HHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCC---GGGTHHHHHHHHHHTT-
T ss_pred             HHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC---cccchHHHHHHHHHhC-
Confidence            10     101111111   112333    3444444322223666677776544321110   1122456788888774 


Q ss_pred             CCHHHHHHHHHHHHHHhhccccc-cchhhhhcCcHHHHHH-------hhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 009514          242 DSSDVRSAACMCLRSVSRSIKNL-SAGSFMNETIVIPLVR-------LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR  313 (533)
Q Consensus       242 ~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~~i~~Lv~-------lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~  313 (533)
                       +++++..|+.++..+....... ... .. ...++.++.       .+...|.+.....+..+..+......   .+.+
T Consensus       252 -~~~~~~~a~~~l~~i~~~~~~~~~~~-~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~---~l~~  325 (963)
T 2x19_B          252 -DSELFDSSVEAIVNAISQPDAQRYVN-TL-LKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSR---ALLD  325 (963)
T ss_dssp             -STTTHHHHHHHHHHHHTCTTGGGCHH-HH-HHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred             -CchHHHHHHHHHHHHHcccccccCHH-HH-HHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHH---HHHc
Confidence             6789999999999986532111 111 10 112222222       22344556656666666665532111   1110


Q ss_pred             --------hCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhccC---C----hHhHH---HHHHhhcHHHHHhhhCCC
Q 009514          314 --------LGGVKLLVQLSKS-----MDSTIRLNALRALRNLIFLA---E----DKCKE---EIFMELTASLLASLICDP  370 (533)
Q Consensus       314 --------~~~i~~L~~ll~~-----~~~~~~~~al~aL~~l~~~~---~----~~~~~---~i~~~~~~~~l~~lL~~~  370 (533)
                              ...++.++.....     .++.+...++.....++...   +    +..+.   ..+.. .++.++.-+.-+
T Consensus       326 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~ll~~~~~p  404 (963)
T 2x19_B          326 QVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQ-LVDVLLHKAQFP  404 (963)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH-HHHHHHHHHSCC
T ss_pred             CccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHcCC
Confidence                    1344555555553     34555666666666654411   0    11111   11111 133444433322


Q ss_pred             Ch---------------hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc---cCCchhHHHHHHHHHHHhcc
Q 009514          371 EP---------------SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR---IASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       371 ~~---------------~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~---~~~~~~v~~~a~~~L~~l~~  432 (533)
                      +.               +.+..+..+|..++...++   .++.   .+++.+...+.   .+.++..++.++++++.++.
T Consensus       405 ~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~---~~l~---~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~  478 (963)
T 2x19_B          405 SDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA---ELLS---NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAE  478 (963)
T ss_dssp             CHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH---HHHH---HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTT
T ss_pred             CcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH---HHHH---HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHh
Confidence            11               1123333444444321110   1111   13444444552   23677889999999999998


Q ss_pred             CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCC
Q 009514          433 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL  512 (533)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~  512 (533)
                      +........+.        .+++.+.. +.++++.+|..++|+++.++..    ...+...+  ..+++.|.+.+.+  +
T Consensus       479 ~~~~~~~~~l~--------~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~----l~~~~~~l--~~vl~~l~~~l~~--~  541 (963)
T 2x19_B          479 TIDVNYSDVVP--------GLIGLIPR-ISISNVQLADTVMFTIGALSEW----LADHPVMI--NSVLPLVLHALGN--P  541 (963)
T ss_dssp             SCCSSCCSHHH--------HHHHHGGG-SCCCSHHHHHHHHHHHHHTHHH----HHHCHHHH--TTTHHHHHHHTTC--G
T ss_pred             hcCchhhHHHH--------HHHHHHHh-CCCCcHHHHHHHHHHHHHHHHH----HHhCHHHH--HHHHHHHHHHhCC--c
Confidence            65421111221        22232222 2345788999999999999831    11122222  4678888888864  8


Q ss_pred             cHHHHHHHHHHHHhhhc
Q 009514          513 DVKLRVKTALEQFNSFD  529 (533)
Q Consensus       513 ~v~~~a~~aL~~~~~~~  529 (533)
                      .|+..|..||.++.+..
T Consensus       542 ~V~~~A~~al~~l~~~~  558 (963)
T 2x19_B          542 ELSVSSVSTLKKICREC  558 (963)
T ss_dssp             GGHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            99999999999997643

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.35  E-value=0.00014  Score=71.39  Aligned_cols=320  Identities=16%  Similarity=0.155  Sum_probs=189.8

Q ss_pred             cccchHHHHhhhc-CCCcchhHHHHHHHHHhhcCch---hHHHHHhcCchH--HHHH-hhcCC-hHHHHHHHHHHHHHhc
Q 009514           15 QEENMEFLLSLLN-NESENVSGLGASIISHSCKTSL---EQKLLFDAGVLK--RLTS-LLGGS-LIQRDASLESIATIFK   86 (533)
Q Consensus        15 ~~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~~~---~~~~i~~~g~i~--~L~~-lL~~~-~~v~~~al~aL~~l~~   86 (533)
                      ++.++..++++|+ ...+++.++....+..+...+.   .+..++....-+  .+.. .+..+ +-....+...++.++.
T Consensus        75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~  154 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  154 (480)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            3567788999999 4568888888888888776554   343343332111  1222 22233 3455666666666653


Q ss_pred             CChhhhhhhccccCcccHH--HHHHHHhcC-ChhhHHHHHHHHHHhhhcCCCcchhhhhHh--hhHHHHHHhcC---C--
Q 009514           87 NNPEVVSQFVGPDTGRTLS--CIIEIVKDR-FARTRLLASLCLIVIRNASPCYLQDVGIKT--KLINNLLELLD---D--  156 (533)
Q Consensus        87 ~~~~~~~~~~~~~~~~~i~--~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~i~~L~~ll~---~--  156 (533)
                      ..+.....+     ...+.  .++..++.. +.+.+..+++||..+.....  .+..+...  ..+|.+++++.   +  
T Consensus       155 ~~~~~~~~l-----~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~--~R~~f~~~~~~~~~~l~~il~~~~~~~  227 (480)
T 1ho8_A          155 NGLHNVKLV-----EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE--YRDVIWLHEKKFMPTLFKILQRATDSQ  227 (480)
T ss_dssp             TTTCCHHHH-----HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH--HHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred             cCCccHhHH-----HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh--HHHHHHHcccchhHHHHHHHHHhhccc
Confidence            222110000     11122  344555553 45667789999998887542  23333322  34777765443   1  


Q ss_pred             ---------C----CchhhhHHHHHHhhhcCCHHHHHHHHHcCcH--HHHHHhhhcCCCCchhHHHHHHHHHHhhccch-
Q 009514          157 ---------P----GRVGDEASFAFSSLIAEKEDMQKLAFEVNGV--DKLYNHLQKGSLHPRRFEGILLALADMCSKLE-  220 (533)
Q Consensus       157 ---------~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l--~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-  220 (533)
                               .    -.++.+++.++.-++...+ ..+.+...+..  +.|++.++... -+++..-++.+|.|+....+ 
T Consensus       228 ~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~-KEKvvRv~la~l~Nll~~~~~  305 (480)
T 1ho8_A          228 LATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVK  305 (480)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSST
T ss_pred             cccccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcccch
Confidence                     1    1346888888888876654 33444444432  56777677663 35666777888999887542 


Q ss_pred             ---hhhH-hhhhhchHHHHHHhcCC---CCHHHHHHHHHHHHHHhhccc---------------cccch-----------
Q 009514          221 ---CCRS-RCLSLQVLKLVVDALAH---DSSDVRSAACMCLRSVSRSIK---------------NLSAG-----------  267 (533)
Q Consensus       221 ---~~~~-~~~~~~~l~~l~~~L~~---~~~~v~~~a~~~L~~ls~~~~---------------~~~~~-----------  267 (533)
                         .... .++..+++ .+++.|+.   .|+++...--...-.|.....               .++++           
T Consensus       306 ~~~~~~~~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~E  384 (480)
T 1ho8_A          306 QHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSD  384 (480)
T ss_dssp             THHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHH
T ss_pred             hhhhHHHHHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHH
Confidence               1112 22233444 45555542   345444332222222211100               01111           


Q ss_pred             ---hhhh--cCcHHHHHHhhcC----------CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHH
Q 009514          268 ---SFMN--ETIVIPLVRLLDD----------TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR  332 (533)
Q Consensus       268 ---~~~~--~~~i~~Lv~lL~~----------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~  332 (533)
                         +|-+  ...+..|+++|++          .|+.+..-||.=|+.++..++..+..+-+.|+=..+++++.++|+++|
T Consensus       385 Na~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr  464 (480)
T 1ho8_A          385 NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK  464 (480)
T ss_dssp             HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred             HHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence               1222  2357889999973          378899999999999999988888777778888888999999999999


Q ss_pred             HHHHHHHHHhhc
Q 009514          333 LNALRALRNLIF  344 (533)
Q Consensus       333 ~~al~aL~~l~~  344 (533)
                      .+|+.|+..+..
T Consensus       465 ~~AL~avQklm~  476 (480)
T 1ho8_A          465 YEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.30  E-value=0.0012  Score=73.99  Aligned_cols=455  Identities=11%  Similarity=0.085  Sum_probs=237.2

Q ss_pred             CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHH
Q 009514           28 NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLS  105 (533)
Q Consensus        28 ~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~  105 (533)
                      +++...|..|-..|..+-..+         ++...+..+|.+  +..+|..|+..|.+....+   +..+.. .....|.
T Consensus        27 ~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~---W~~l~~-~~~~~ir   93 (1049)
T 3m1i_C           27 QGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRK---WKLLPN-DHRIGIR   93 (1049)
T ss_dssp             HCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHT---GGGSCH-HHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhh---CccCCH-HHHHHHH
Confidence            455556667777776664332         456677777753  6689999998988865321   111100 0011122


Q ss_pred             -HHHHHHhc----C-----ChhhHHHHHHHHHHhhhcC-CCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcC
Q 009514          106 -CIIEIVKD----R-----FARTRLLASLCLIVIRNAS-PCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAE  174 (533)
Q Consensus       106 -~l~~ll~~----~-----~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~  174 (533)
                       .++..+.+    +     ++.+|...+.++..++... +.      .+.+.++.|++.++.++..+..+..+|..+.++
T Consensus        94 ~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~------~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~ee  167 (1049)
T 3m1i_C           94 NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ------NWPEFIPELIGSSSSSVNVCENNMIVLKLLSEE  167 (1049)
T ss_dssp             HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc------cchHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence             23443332    1     3667888888888887653 21      245788999998874433445555566655422


Q ss_pred             CH---------HH----HHHHHHc--CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHH-h
Q 009514          175 KE---------DM----QKLAFEV--NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-A  238 (533)
Q Consensus       175 ~~---------~~----~~~~~~~--~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~-~  238 (533)
                      ..         .-    +..+.+.  ..++.+.+++.+. .++.++..++.++.+....-+  ...+.+...++.+.+ +
T Consensus       168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~  244 (1049)
T 3m1i_C          168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-SSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKF  244 (1049)
T ss_dssp             HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHH
T ss_pred             HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHh
Confidence            11         00    0111111  1123344555544 346678888888877654222  122445567776663 3


Q ss_pred             cCCCCHHHHHHHHHHHHHHhhcc-ccc--c-chhhhh--cCcHHHHHH-hh-------------cCCCHHHHHHHHHHHH
Q 009514          239 LAHDSSDVRSAACMCLRSVSRSI-KNL--S-AGSFMN--ETIVIPLVR-LL-------------DDTSTAVQVAALGAIS  298 (533)
Q Consensus       239 L~~~~~~v~~~a~~~L~~ls~~~-~~~--~-~~~~~~--~~~i~~Lv~-lL-------------~~~~~~v~~~a~~aL~  298 (533)
                      +  .++.++..|+.||..+.... +..  + ..++..  .+++..+.. ++             .+.+.+.....+..+.
T Consensus       245 l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~  322 (1049)
T 3m1i_C          245 M--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLT  322 (1049)
T ss_dssp             H--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHH
T ss_pred             C--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHH
Confidence            3  37899999999999886441 111  0 000100  112222211 11             1234454445555554


Q ss_pred             HHhcC-------CchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc----CC-hHhHHHHHHhhcHHHHHhh
Q 009514          299 NIVVD-------FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL----AE-DKCKEEIFMELTASLLASL  366 (533)
Q Consensus       299 nl~~~-------~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~----~~-~~~~~~i~~~~~~~~l~~l  366 (533)
                      .+...       .+..... + ...++.++.....++..+...++.....++..    .. ...-..++.. .++.++..
T Consensus       323 ~~~~~~~~~~~~~~~~~~~-l-~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~-Lv~~ll~~  399 (1049)
T 3m1i_C          323 TYLARNRALLESDESLREL-L-LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ-LRLVIIEN  399 (1049)
T ss_dssp             HHHHHHHHHHHSCGGGHHH-H-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHH-HHHHHHHT
T ss_pred             HHHHHHHHHHcCChhhHHH-H-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH-HHHHHHHh
Confidence            33321       1111111 1 23566666666777888888888777777651    11 0111112222 12344443


Q ss_pred             hCCC-------------------Ch---hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-CCchhHHHHH
Q 009514          367 ICDP-------------------EP---SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQG  423 (533)
Q Consensus       367 L~~~-------------------~~---~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~-~~~~~v~~~a  423 (533)
                      +.-+                   +.   ..+..+..+|..++.-.+.   .++.   .+++.+.+.+.+ ..++..++.+
T Consensus       400 m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~---~v~~~l~~~l~~~~~~W~~~eaa  473 (1049)
T 3m1i_C          400 MVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEE---IMISKLARQIDGSEWSWHNINTL  473 (1049)
T ss_dssp             CCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHH---HHHHHHHHHHTSSSCCHHHHHHH
T ss_pred             cCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHH---HHHHHHHHHhCCCCCCHHHHHHH
Confidence            3211                   00   1233344455555422211   1111   134445455543 2567889999


Q ss_pred             HHHHHHhccCChhhH-HHHHHHhhHhhhhhhHHHHHHhhc-----cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHC
Q 009514          424 MYVLGNVATGKESHK-EAVMDQLLLRAENKAQSCIIKFLQ-----SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA  497 (533)
Q Consensus       424 ~~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~lv~~L~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~  497 (533)
                      +++++.++.+..... ..++        ..+++.+..+..     ++++.++..++|+++.++..    ...+...+  .
T Consensus       474 l~algsia~~~~~~~e~~~l--------~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~----~~~~~~~l--~  539 (1049)
T 3m1i_C          474 SWAIGSISGTMSEDTEKRFV--------VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRF----LKAHWNFL--R  539 (1049)
T ss_dssp             HHHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHH----HHHCHHHH--H
T ss_pred             HHHHHHHhcccCchhhHHHH--------HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH----HHhHHHHH--H
Confidence            999999986543221 1222        234455555432     13445666799999988831    01111222  1


Q ss_pred             CcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          498 GIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       498 g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      .+++.|.+.+.++++.|+..|..||.++.+..
T Consensus       540 ~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~  571 (1049)
T 3m1i_C          540 TVILKLFEFMHETHEGVQDMACDTFIKIVQKC  571 (1049)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            35677777788888999999999999997753

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.28  E-value=0.0029  Score=69.90  Aligned_cols=467  Identities=10%  Similarity=0.061  Sum_probs=239.1

Q ss_pred             ccchHHHHhhhc-CCCcchhHHHHHHHHHhhcC-----chhHHHHHhcCchHHHHHhhcC------ChHHHHHHHHHHHH
Q 009514           16 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIAT   83 (533)
Q Consensus        16 ~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~-----~~~~~~i~~~g~i~~L~~lL~~------~~~v~~~al~aL~~   83 (533)
                      +++++.+..+|. +.++.+|..|+.+|.+....     +.....-.+...++.+.+.-.+      +.-++.+...+++.
T Consensus        47 p~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~  126 (1023)
T 4hat_C           47 PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQ  126 (1023)
T ss_dssp             TTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHH
Confidence            455666666665 45678888888888775542     2233333344444555443322      23455566677777


Q ss_pred             HhcC-ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhc----CCCc---chhhhh----H---hhhHH
Q 009514           84 IFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNA----SPCY---LQDVGI----K---TKLIN  148 (533)
Q Consensus        84 l~~~-~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~---~~~~~~----~---~~~i~  148 (533)
                      ++.. .|+.+        .+.++.++.+++++ +.........|..+...    ....   .+...+    .   ..+++
T Consensus       127 I~~~~~p~~W--------p~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~  197 (1023)
T 4hat_C          127 ILKQEWPQNW--------PEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFK  197 (1023)
T ss_dssp             HHHHHTTTTC--------TTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhChhhc--------hHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence            6543 23333        45678888877643 34455566666655432    1000   011111    1   12333


Q ss_pred             HHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHH-HhhhcCCCCchhHHHHHHHHHHhhccc---h--
Q 009514          149 NLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-NHLQKGSLHPRRFEGILLALADMCSKL---E--  220 (533)
Q Consensus       149 ~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-~~L~~~~~~~~~~~~a~~aL~~l~~~~---~--  220 (533)
                      .+.+++.  ..+.+...+..++......-+-  ..+.+.+.++.+. .+|.+    +..+..|+.+|..+.+..   +  
T Consensus       198 ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i--~~i~~~~ll~~l~~~~L~~----~~~r~~A~ecL~eIv~~~~~~~~~  271 (1023)
T 4hat_C          198 LCFQVLEQGASSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMTS----PDTRAITLKCLTEVSNLKIPQDND  271 (1023)
T ss_dssp             HHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHHS----HHHHHHHHHHHHHHHTSCCCSSCH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH--HHhcchhHHHHHHHHHcCC----HHHHHHHHHHHHHHHccccCCchH
Confidence            3334443  2345556677777766543221  2345667788888 76642    568999999999988632   1  


Q ss_pred             hhhHhhhh--hchHHHH--------------HHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhc----CcH----H
Q 009514          221 CCRSRCLS--LQVLKLV--------------VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNE----TIV----I  276 (533)
Q Consensus       221 ~~~~~~~~--~~~l~~l--------------~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~----~~i----~  276 (533)
                      .....+..  .+.++.+              ..--.+.+.+....-+..+..+.......    +...    +.+    .
T Consensus       272 ~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~l----i~~~~~~~~~l~~~l~  347 (1023)
T 4hat_C          272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRAL----LESDESLRELLLNAHQ  347 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGG----GTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH----HhCCcchhHHHHHHHH
Confidence            12111111  0112211              11112334666666777777775542211    1111    112    2


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcC---CchhH---HHHHHhCcHHHHHHhhcCCC--------------------H-
Q 009514          277 PLVRLLDDTSTAVQVAALGAISNIVVD---FTTRR---STFIRLGGVKLLVQLSKSMD--------------------S-  329 (533)
Q Consensus       277 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~---~~~~~---~~~~~~~~i~~L~~ll~~~~--------------------~-  329 (533)
                      .|+.+-..++.++-..+...=..++.+   .+..+   ..+. ...++.+++-+..+.                    + 
T Consensus       348 ~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~-~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~  426 (1023)
T 4hat_C          348 YLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDT  426 (1023)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHH-HHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGG
T ss_pred             HHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHH
Confidence            334443567888877666543333321   00011   1111 134555555444332                    0 


Q ss_pred             -----HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC--CChhHHHHHHHHHHHhhcCCcch-HHHHHhhcC
Q 009514          330 -----TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD--PEPSVQEQALALVRNLVDGRINS-VEYIFAEDG  401 (533)
Q Consensus       330 -----~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~  401 (533)
                           ..| ..+..+.++..   +    .++. ...+.+.+.+.+  .++..++.++++++.++.+..+. ....+..  
T Consensus       427 ~~~f~~~R-d~L~~l~~l~~---~----~~~~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~--  495 (1023)
T 4hat_C          427 IQLYKSER-EVLVYLTHLNV---I----DTEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT--  495 (1023)
T ss_dssp             HHHHHHHH-HHHHHHHHHCH---H----HHHH-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--
T ss_pred             HHHHHHHH-HHHHHHhccCH---H----HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHH--
Confidence                 112 22222222211   1    1111 112333334443  68999999999999999775432 2222221  


Q ss_pred             chHHHHHHHhcc----CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 009514          402 IILDAVGRQLRI----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL  477 (533)
Q Consensus       402 ~~~~~L~~~L~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~  477 (533)
                       +++.|..++.+    +++..++..++|+++.++.--..+ ...+        ..++..+.+.+.++++.++..||+++.
T Consensus       496 -vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L--------~~vl~~L~~~l~~~~~~v~~~A~~al~  565 (1023)
T 4hat_C          496 -VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFL--------RTVILKLFEFMHETHEGVQDMACDTFI  565 (1023)
T ss_dssp             -HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHH--------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             -HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHH--------HHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence             56667666643    133456678889999877421111 1122        245566777777788899999999999


Q ss_pred             hhcCCCCCCcHHHHHHHHH------CCcHH----HHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          478 NLTCSSSPGSSGRLVKLHD------AGIVS----HVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       478 ~l~~~~~~~~~~~~~~l~~------~g~~~----~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      +++..    .   ...+..      ...++    .+.+....-.+.-...+..|++.+.+..+
T Consensus       566 ~l~~~----c---~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          566 KIVQK----C---KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHHHH----H---THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHH----H---HHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            99951    1   112211      11233    33333333345555678888888876543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.23  E-value=0.0011  Score=71.63  Aligned_cols=292  Identities=9%  Similarity=0.058  Sum_probs=196.2

Q ss_pred             HHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC
Q 009514          205 FEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD  284 (533)
Q Consensus       205 ~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~  284 (533)
                      +..+...+..+...+..  ......+.+..+.+.+.+....  +.|+.++..++...+.......+--+.++.++..+.+
T Consensus        31 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d  106 (986)
T 2iw3_A           31 RHEIASEVASFLNGNII--EHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN  106 (986)
T ss_dssp             HHHHHHHHHHHHTSSCS--SSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcccc--ccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcC
Confidence            45566666666543211  1223347888888888877555  8999999999865322111001223567888888888


Q ss_pred             CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHH--hhcHH
Q 009514          285 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTAS  361 (533)
Q Consensus       285 ~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~--~~~~~  361 (533)
                      .+..|+.+|..++..+....++..-    ...+|.|+..+.+. ....+..|+.++..++... +   +.+..  ...+|
T Consensus       107 k~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~---~~~~~~~~~~~p  178 (986)
T 2iw3_A          107 KDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-K---DQVALRMPELIP  178 (986)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-H---HHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-H---HHHHHhccchhc
Confidence            8899999988888777765444321    35688998888755 5778999999999998644 3   22222  23578


Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHhhcCC-cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHH
Q 009514          362 LLASLICDPEPSVQEQALALVRNLVDGR-INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEA  440 (533)
Q Consensus       362 ~l~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  440 (533)
                      .+...+-|..++|...|..++..+|..- ...++       ..++.|++.+.+ |  +-...+...|+.-+--.+ ....
T Consensus       179 ~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-------~~~~~~~~~~~~-p--~~~~~~~~~l~~~tfv~~-v~~~  247 (986)
T 2iw3_A          179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-------RFIPSLIQCIAD-P--TEVPETVHLLGATTFVAE-VTPA  247 (986)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-------GGHHHHHHHHHC-T--THHHHHHHHHTTCCCCSC-CCHH
T ss_pred             chHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-------hhHHHHHHHhcC-h--hhhHHHHHHhhcCeeEee-ecch
Confidence            8888899999999999999999888431 11111       167888888876 4  335556777765443222 1122


Q ss_pred             HHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc-CCCCcHHHHHH
Q 009514          441 VMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-DPCLDVKLRVK  519 (533)
Q Consensus       441 ~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-~~~~~v~~~a~  519 (533)
                      .+        +=.+|.|.+-|+.....++..++..+.|++.-.  ..+.-...+. -..+|.|.+..+ -++|++|+.+.
T Consensus       248 ~l--------~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv--~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~  316 (986)
T 2iw3_A          248 TL--------SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV--EDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTL  316 (986)
T ss_dssp             HH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC--CCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred             hH--------HHHHHHHHhhhccCcchhheeeEEEEcchhhhc--CCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHH
Confidence            22        345689999999999999999999999999633  3344444443 335677777654 46899999999


Q ss_pred             HHHHHHhhhcc
Q 009514          520 TALEQFNSFDD  530 (533)
Q Consensus       520 ~aL~~~~~~~~  530 (533)
                      .|+..+.+.++
T Consensus       317 ~a~~~l~~~~~  327 (986)
T 2iw3_A          317 RALKTLRRVGN  327 (986)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhhc
Confidence            99999876643

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=98.09  E-value=0.0012  Score=72.72  Aligned_cols=438  Identities=11%  Similarity=0.100  Sum_probs=229.9

Q ss_pred             ccchHHHHhhhcCC---CcchhHHHHHHHHHhhc--Cch----hHHHHHhcCchHHHHHhh--cCChHHHHHHHHHHHHH
Q 009514           16 EENMEFLLSLLNNE---SENVSGLGASIISHSCK--TSL----EQKLLFDAGVLKRLTSLL--GGSLIQRDASLESIATI   84 (533)
Q Consensus        16 ~~~i~~L~~lL~~~---~~~v~~~a~~~l~~~~~--~~~----~~~~i~~~g~i~~L~~lL--~~~~~v~~~al~aL~~l   84 (533)
                      +++......+|.++   ++.+|..|+.+|.+...  .++    .+. -.+...++.+.+.-  .++.-+|.+...++..+
T Consensus        39 p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~-~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l  117 (980)
T 3ibv_A           39 STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQ-MIRDSVWSYIKELSFLDEPAYISNAVQHLLTLL  117 (980)
T ss_dssp             TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH-HHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence            56788888888764   57888889998887543  122    233 33333444444411  12446888888888888


Q ss_pred             hcC-ChhhhhhhccccCcccHHHHHHHHhcCCh-hhHHHHHHHHHHhhhcCCC----c-----c-----hhhhhHh---h
Q 009514           85 FKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFA-RTRLLASLCLIVIRNASPC----Y-----L-----QDVGIKT---K  145 (533)
Q Consensus        85 ~~~-~~~~~~~~~~~~~~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~----~-----~-----~~~~~~~---~  145 (533)
                      ... .|..+        .+.++.++.+++++++ .......+.|..+...-..    +     .     ++.+...   .
T Consensus       118 ~~~~~p~~W--------p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~  189 (980)
T 3ibv_A          118 FLQLYPSNW--------NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSD  189 (980)
T ss_dssp             HHHHTTTTC--------TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHhCcccC--------chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHH
Confidence            643 34443        4578888888776444 2333344444432222100    0     0     1111111   1


Q ss_pred             hHHHHHHhcC-----CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch
Q 009514          146 LINNLLELLD-----DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE  220 (533)
Q Consensus       146 ~i~~L~~ll~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~  220 (533)
                      +++....+|.     .++.+...+..++......-+.  ..+.+.+.++.+.++|..    +..+..|+.+|..+.....
T Consensus       190 i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~----~~~r~~A~ecL~ei~~k~~  263 (980)
T 3ibv_A          190 IVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI----EELRCAACETMTEIVNKKM  263 (980)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS----HHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC----hHHHHHHHHHHHHHHHcCC
Confidence            1333333442     2345566777777766654222  233445566777776643    6789999999998876532


Q ss_pred             --hhhHhhhhhchHHHHHHhcC--CCCHHHHHHHHHHHHHHhhccccc---c---------chhhhhcCcHHHHHHhhcC
Q 009514          221 --CCRSRCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVSRSIKNL---S---------AGSFMNETIVIPLVRLLDD  284 (533)
Q Consensus       221 --~~~~~~~~~~~l~~l~~~L~--~~~~~v~~~a~~~L~~ls~~~~~~---~---------~~~~~~~~~i~~Lv~lL~~  284 (533)
                        +.+..++..=.+...+..+.  .++.++...-++.+..++...-..   .         ...-.-.++++.++..+.+
T Consensus       264 ~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~  343 (980)
T 3ibv_A          264 KPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD  343 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC
T ss_pred             ChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCC
Confidence              22222222211222222222  467777766666665543220000   0         0000113577888888888


Q ss_pred             CCHHHHHHHHHHHHHHhcCC---------chhHHHHHHhCcHHHHHHhhcCC------C----------HHHHHHHHHHH
Q 009514          285 TSTAVQVAALGAISNIVVDF---------TTRRSTFIRLGGVKLLVQLSKSM------D----------STIRLNALRAL  339 (533)
Q Consensus       285 ~~~~v~~~a~~aL~nl~~~~---------~~~~~~~~~~~~i~~L~~ll~~~------~----------~~~~~~al~aL  339 (533)
                      ++.++-..+...+..+....         ......++ ...++.+++-++.+      +          .+.|.... ++
T Consensus       344 ~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l  421 (980)
T 3ibv_A          344 DYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IF  421 (980)
T ss_dssp             SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HH
T ss_pred             CchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HH
Confidence            88888887776666554211         01111111 12344444433321      0          12444433 33


Q ss_pred             HHhhccCChHh-HHHHHHhhcHHHHHhhhC---CCChhHHHHHHHHHHHhhcCCcchHHHHHhhc----CchHHHHHHHh
Q 009514          340 RNLIFLAEDKC-KEEIFMELTASLLASLIC---DPEPSVQEQALALVRNLVDGRINSVEYIFAED----GIILDAVGRQL  411 (533)
Q Consensus       340 ~~l~~~~~~~~-~~~i~~~~~~~~l~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~----~~~~~~L~~~L  411 (533)
                      ...+...+++. -..+.+ ...+.+.+.+.   +.++...+.++.+|..++++.......+ .+.    ..+++.+..++
T Consensus       422 ~d~~~~l~~~~~l~~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~~~~~lp~l~~ll~~ll  499 (980)
T 3ibv_A          422 QDTINSIDSSLFSSYMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-NEVDKSPTVLSQILALVT  499 (980)
T ss_dssp             HHHHHHHCHHHHHHHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CSSSCCBCHHHHHHHHHH
T ss_pred             HHHHHhcChHHHHHHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-CcccchhHHHHHHHHHHH
Confidence            33322222211 111111 11222333332   3468899999999999998755322111 111    12566666665


Q ss_pred             cc----CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH--hhccCChhHHHHHHHHHHhhcC
Q 009514          412 RI----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK--FLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       412 ~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~--~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      .+    .+.+.|+..++++++.++.-...+. ..+        ..+++.++.  -+.+++..|+..|+.++.+++.
T Consensus       500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-~~l--------~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~  566 (980)
T 3ibv_A          500 TSQVCRHPHPLVQLLYMEILVRYASFFDYES-AAI--------PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK  566 (980)
T ss_dssp             HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-TTH--------HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred             hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-hhH--------HHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence            52    3678999999999999886322111 112        133345555  5556788999999999999985

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.02  E-value=0.0066  Score=67.11  Aligned_cols=467  Identities=12%  Similarity=0.086  Sum_probs=228.4

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcC-----Chh
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKN-----NPE   90 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~-----~~~   90 (533)
                      .+..++..+-+++...+..|-..|..+-..         .++......+|.+  ++.+|-.|+..|.+....     +++
T Consensus        17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s---------p~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e   87 (1023)
T 4hat_C           17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND   87 (1023)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC---------TTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHcC---------ccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence            444445444445444566666666555433         3355666667752  678999998888776532     122


Q ss_pred             hhhhhccccCcccHHHHHHHHhcC-----ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHH
Q 009514           91 VVSQFVGPDTGRTLSCIIEIVKDR-----FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEAS  165 (533)
Q Consensus        91 ~~~~~~~~~~~~~i~~l~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~  165 (533)
                      .+..+.    ...+..+.....++     .+.++..-+.++..++...-   .  ..+.+.++-++++++.++.......
T Consensus        88 ~~~~Ir----~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~---p--~~Wp~~l~dL~~~l~~~~~~~~~~L  158 (1023)
T 4hat_C           88 HRIGIR----NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEW---P--QNWPEFIPELIGSSSSSVNVCENNM  158 (1023)
T ss_dssp             HHHHHH----HHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHT---T--TTCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHH----HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhC---h--hhchHHHHHHHHHhcCCHHHHHHHH
Confidence            111111    11122222222221     23445556666777666431   0  1245788999999875544444445


Q ss_pred             HHHHhhhcC---------CHH----HHHHHHHc--CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhc
Q 009514          166 FAFSSLIAE---------KED----MQKLAFEV--NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ  230 (533)
Q Consensus       166 ~~L~~l~~~---------~~~----~~~~~~~~--~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~  230 (533)
                      .+|..+.++         ...    .+..+.+.  ..++.+..+|.+. .++.+...++.++.....--+  -..+.+.+
T Consensus       159 ~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~-~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~  235 (1023)
T 4hat_C          159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-ASSSLIVATLESLLRYLHWIP--YRYIYETN  235 (1023)
T ss_dssp             HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTTSC--THHHHSSS
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCC--HHHhcchh
Confidence            555554322         111    11111111  1233444555544 356777888888888764221  24566778


Q ss_pred             hHHHHH-HhcCCCCHHHHHHHHHHHHHHhhc-c-ccc--cchhhhh--cCcHHHH-----------HHhh---cCCCHHH
Q 009514          231 VLKLVV-DALAHDSSDVRSAACMCLRSVSRS-I-KNL--SAGSFMN--ETIVIPL-----------VRLL---DDTSTAV  289 (533)
Q Consensus       231 ~l~~l~-~~L~~~~~~v~~~a~~~L~~ls~~-~-~~~--~~~~~~~--~~~i~~L-----------v~lL---~~~~~~v  289 (533)
                      .++.+. .++.  ++.++..|+.||..+... . +..  ....+..  .+.++.+           -..+   .+.|.+.
T Consensus       236 ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~  313 (1023)
T 4hat_C          236 ILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSF  313 (1023)
T ss_dssp             HHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHH
T ss_pred             HHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHH
Confidence            899998 8874  678999999999998652 1 110  0000000  0111111           0111   2234555


Q ss_pred             HHHHHHHHHHHhcCCch------hHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc--CChHhH---HHHHHhh
Q 009514          290 QVAALGAISNIVVDFTT------RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL--AEDKCK---EEIFMEL  358 (533)
Q Consensus       290 ~~~a~~aL~nl~~~~~~------~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~--~~~~~~---~~i~~~~  358 (533)
                      ...-+..+..+......      ....++ ..++..++.....++.++-..++..=..+...  .++..+   ..++. .
T Consensus       314 ~~~l~~l~~~~~e~~~~li~~~~~~~~~l-~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~  391 (1023)
T 4hat_C          314 LQDLAMFLTTYLARNRALLESDESLRELL-LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-Q  391 (1023)
T ss_dssp             HHHHHHHHHHHHHHHGGGGTSCGGGHHHH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcchhHHH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-H
Confidence            55555555444321111      001111 11233444444455666555544332222210  011011   01111 1


Q ss_pred             cHHHHHhhhCCCC-------------------hh--HHHHHH-HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-CC
Q 009514          359 TASLLASLICDPE-------------------PS--VQEQAL-ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-AS  415 (533)
Q Consensus       359 ~~~~l~~lL~~~~-------------------~~--v~~~a~-~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~-~~  415 (533)
                      .++.+++-+.-++                   .+  ..-... .+|..++.-...   .++.   .+++.+.+.+.+ ..
T Consensus       392 L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~---~~~~---~~~~~l~~~l~~~~~  465 (1023)
T 4hat_C          392 LRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEE---IMISKLARQIDGSEW  465 (1023)
T ss_dssp             HHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHH---HHHH---HHHHHHHHHHSSTTC
T ss_pred             HHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHH---HHHH---HHHHHHHHHhcCCCC
Confidence            2333333332111                   00  000000 222222111000   0110   023344444443 25


Q ss_pred             chhHHHHHHHHHHHhccCChhh-HHHHHHHhhHhhhhhhHHHHHHhhcc-----CChhHHHHHHHHHHhhcCCCCCCcHH
Q 009514          416 KAEIEIQGMYVLGNVATGKESH-KEAVMDQLLLRAENKAQSCIIKFLQS-----NDSRLRTAAVWAVLNLTCSSSPGSSG  489 (533)
Q Consensus       416 ~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~lv~~L~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~  489 (533)
                      ++..+++++|+++.++.+.... ....+        ..+++.|+.++.+     +...++..++|++++++.-    ...
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l--------~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w----l~~  533 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFV--------VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF----LKA  533 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH----HHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHH--------HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH----Hhc
Confidence            6889999999999999765432 23333        4677888888763     3345777889999999830    011


Q ss_pred             HHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          490 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       490 ~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      +...+  ..++..|.+-+.++++.|++.|.+|+.++.+..
T Consensus       534 ~~~~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c  571 (1023)
T 4hat_C          534 HWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKC  571 (1023)
T ss_dssp             CHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence            11221  123445555556677889999999999997643

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.96  E-value=0.00098  Score=62.12  Aligned_cols=191  Identities=17%  Similarity=0.169  Sum_probs=134.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHH
Q 009514          276 IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF  355 (533)
Q Consensus       276 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~  355 (533)
                      ..+++-|.+.+.+.+..++..|..+..........++..+|+..|+......+...+..++.|+.++..+.+  .-.-++
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~--Gm~gvv  198 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD--GMLGVV  198 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH--HHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc--cccchh
Confidence            345666667778888999999998554667788899999999999999999999999999999999976532  222333


Q ss_pred             -HhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhh--------cCchHHHHHHHhc--cCCchhHHHHHH
Q 009514          356 -MELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE--------DGIILDAVGRQLR--IASKAEIEIQGM  424 (533)
Q Consensus       356 -~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--------~~~~~~~L~~~L~--~~~~~~v~~~a~  424 (533)
                       +...+..+..++.+.+..|...|+.+|-.++..++.....+..+        +...++.++.+|.  ++.+.+++..++
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence             44568889999999999999999999999987765444333222        1124778888887  237899999988


Q ss_pred             HHHHHhccCCh--hhHHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHH
Q 009514          425 YVLGNVATGKE--SHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTA  471 (533)
Q Consensus       425 ~~L~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~  471 (533)
                      ..|..+..+.+  +.+..+.+.+-   ..|+-..+.+.++..  +.+++.+
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le---~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALE---QQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHH---HTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHH---HccHHHHHHHHHhccCCCHHHHHH
Confidence            87766655433  22333333211   245545666666654  4455443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.93  E-value=0.00074  Score=74.47  Aligned_cols=439  Identities=13%  Similarity=0.089  Sum_probs=210.6

Q ss_pred             hHHHHhhhc----CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChh--hh
Q 009514           19 MEFLLSLLN----NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPE--VV   92 (533)
Q Consensus        19 i~~L~~lL~----~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~--~~   92 (533)
                      ++..+.+|.    +.++.+...+..++.....-- .-..+.....++.+.++|.. +.++..|++||..+.....+  ..
T Consensus       191 ~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~l~~~L~~-~~~r~~A~ecL~ei~~k~~~~~~k  268 (980)
T 3ibv_A          191 VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNLLYSFLQI-EELRCAACETMTEIVNKKMKPLEK  268 (980)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHHHHHHcCC-hHHHHHHHHHHHHHHHcCCChhhH
Confidence            344444443    366777888888888876422 23456667778888877765 68999999999998644322  11


Q ss_pred             hhhccccCcccHHHHHHHHh--cCChhhHHHHHHHHHHhh------hcCCCcc------hhhhhHhhhHHHHHHhcCC-C
Q 009514           93 SQFVGPDTGRTLSCIIEIVK--DRFARTRLLASLCLIVIR------NASPCYL------QDVGIKTKLINNLLELLDD-P  157 (533)
Q Consensus        93 ~~~~~~~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~~l~------~~~~~~~------~~~~~~~~~i~~L~~ll~~-~  157 (533)
                      ..+...   -.+..++..+.  ++|.+....-++.+..++      ...+...      +....-.+.+|.+++.++. +
T Consensus       269 ~~li~~---l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~  345 (980)
T 3ibv_A          269 LNLLNI---LNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDY  345 (980)
T ss_dssp             HHHHHH---HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSS
T ss_pred             HHHHHH---HhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCc
Confidence            111100   00111111111  455555433222222211      1111000      0001123678888888874 3


Q ss_pred             CchhhhHHHHHHhhhcC----------CHHHHHHHHHcCcHHHHHHhhhcCCC-C--c-----------hhHHHHHHHHH
Q 009514          158 GRVGDEASFAFSSLIAE----------KEDMQKLAFEVNGVDKLYNHLQKGSL-H--P-----------RRFEGILLALA  213 (533)
Q Consensus       158 ~~~~~~a~~~L~~l~~~----------~~~~~~~~~~~~~l~~L~~~L~~~~~-~--~-----------~~~~~a~~aL~  213 (533)
                      .++-..+...+..+...          .+..+. ++ ...++.+++.+.-++. +  .           +.|......+.
T Consensus       346 deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~-~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d  423 (980)
T 3ibv_A          346 DETSTAVFPFLSDLLVSLRKESSSKELSASLKE-FL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQD  423 (980)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHH-HH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhccccccccHHHHH-HH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHH
Confidence            44433333333332211          111111 10 1123334433332211 0  0           12222221111


Q ss_pred             HhhccchhhhHhhhhhchHHHHHHhcC---CCCHHHHHHHHHHHHHHhhccccccchhh-----hhcCcHHHHHHhhc--
Q 009514          214 DMCSKLECCRSRCLSLQVLKLVVDALA---HDSSDVRSAACMCLRSVSRSIKNLSAGSF-----MNETIVIPLVRLLD--  283 (533)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~l~~l~~~L~---~~~~~v~~~a~~~L~~ls~~~~~~~~~~~-----~~~~~i~~Lv~lL~--  283 (533)
                      .++.-.++......-.-+.+.+-+.+.   +.+|..++++..+|+.++....+.... .     .-...++.+..+++  
T Consensus       424 ~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~-~~~~~~~lp~l~~ll~~ll~s~  502 (980)
T 3ibv_A          424 TINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAF-FNEVDKSPTVLSQILALVTTSQ  502 (980)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGT-BCSSSCCBCHHHHHHHHHHHSS
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccc-cCcccchhHHHHHHHHHHHhCC
Confidence            111111111000000011222223342   346899999999999998875432211 0     11124455555554  


Q ss_pred             ---CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh------hcCCCHHHHHHHHHHHHHhhccCChHhHHHH
Q 009514          284 ---DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL------SKSMDSTIRLNALRALRNLIFLAEDKCKEEI  354 (533)
Q Consensus       284 ---~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l------l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i  354 (533)
                         ++++.++..++++++..+.-....      ...++.++..      +.++++.++..|..++.+++....+..... 
T Consensus       503 i~~~~hp~V~~~~~~~l~rys~~~~~~------~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~-  575 (980)
T 3ibv_A          503 VCRHPHPLVQLLYMEILVRYASFFDYE------SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNY-  575 (980)
T ss_dssp             TTTCCCHHHHHHHHHHHHHTGGGGGTC------CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSS-
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhcC------chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhH-
Confidence               678999999999999987643321      2344444443      345678899999999999987543211110 


Q ss_pred             HHhhcHHHHHhhhCC---C--C----------------hhHHHHHHHHHHHhhcCC---cchHHHHHhhc-CchHHHHHH
Q 009514          355 FMELTASLLASLICD---P--E----------------PSVQEQALALVRNLVDGR---INSVEYIFAED-GIILDAVGR  409 (533)
Q Consensus       355 ~~~~~~~~l~~lL~~---~--~----------------~~v~~~a~~~L~~l~~~~---~~~~~~i~~~~-~~~~~~L~~  409 (533)
                      . ...+..+..+|.-   +  +                .+-+.....+++.+....   ++.....++.- ..++..+.+
T Consensus       576 ~-~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~  654 (980)
T 3ibv_A          576 T-ESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANA  654 (980)
T ss_dssp             H-HHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            0 1123334444431   1  1                123455566666665332   22222222211 002223333


Q ss_pred             HhccCC---chhHH-HHHHHHHHHhccCChhh------HHHHHHHhhHhhhhhhHHHHHHhhc--cCChhHHHHHHHHHH
Q 009514          410 QLRIAS---KAEIE-IQGMYVLGNVATGKESH------KEAVMDQLLLRAENKAQSCIIKFLQ--SNDSRLRTAAVWAVL  477 (533)
Q Consensus       410 ~L~~~~---~~~v~-~~a~~~L~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~lv~~L~--~~~~~v~~~a~~~L~  477 (533)
                      .+....   ++..+ .+.+.+++.++.+.++.      ...++        ....+.+...|.  ..+..+|.+++.++.
T Consensus       655 ~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f--------~~~~~~il~~l~~~~~~~~irea~~~~~~  726 (980)
T 3ibv_A          655 ALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASF--------NKASDEIFLILDRMGFNEDIRGAVRFTSG  726 (980)
T ss_dssp             HHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHH--------HHHHHHHHHHHHHSCCSHHHHHHHHHHHH
T ss_pred             HHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHH--------HHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            333211   11122 25677788888764321      22233        245566666676  467889999999999


Q ss_pred             hhcC
Q 009514          478 NLTC  481 (533)
Q Consensus       478 ~l~~  481 (533)
                      ++..
T Consensus       727 r~i~  730 (980)
T 3ibv_A          727 RIIN  730 (980)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            9885

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.93  E-value=0.0016  Score=70.39  Aligned_cols=261  Identities=13%  Similarity=0.157  Sum_probs=172.2

Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHHhhccch---hhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccc
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLE---CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL  264 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~---~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~  264 (533)
                      +..+.+.+.+.. ++   +.|+.++..++....   .....++  +.+|.++....+....||.+|..++..+....+..
T Consensus        56 ~~~~~~~~~~k~-~~---~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~  129 (986)
T 2iw3_A           56 FGELAKGIKDKK-TA---ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV  129 (986)
T ss_dssp             HHHHHHHHTSHH-HH---HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHhccC-CH---HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence            445555454431 22   888888888885332   1111222  57899999999999999999999998887653321


Q ss_pred             cchhhhhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514          265 SAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  343 (533)
Q Consensus       265 ~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~  343 (533)
                           .-..++|.|+..|.+. .+..+..|+.++..++...+... ...--.++|.+...+.+..++++.+|..++..+|
T Consensus       130 -----a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~  203 (986)
T 2iw3_A          130 -----AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV-ALRMPELIPVLSETMWDTKKEVKAAATAAMTKAT  203 (986)
T ss_dssp             -----GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred             -----HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH-HHhccchhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence                 2256789999988754 79999999999999996543322 1222468899999999999999999999998887


Q ss_pred             ccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHH
Q 009514          344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG  423 (533)
Q Consensus       344 ~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a  423 (533)
                      .--++..     =+..+|.|++.+.+++.  ...++..|+.-+.-..- ..-.+   ..++++|.+-|.. ....++..+
T Consensus       204 ~~~~n~d-----~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v-~~~~l---~~~~p~l~r~l~~-~~~~~~r~~  271 (986)
T 2iw3_A          204 ETVDNKD-----IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV-TPATL---SIMVPLLSRGLNE-RETGIKRKS  271 (986)
T ss_dssp             GGCCCTT-----TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC-CHHHH---HHHHHHHHHHHTS-SSHHHHHHH
T ss_pred             hcCCCcc-----hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee-cchhH---HHHHHHHHhhhcc-Ccchhheee
Confidence            5333210     02347888888887743  33334444333322110 00001   0155777777766 678899999


Q ss_pred             HHHHHHhcc--CChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHhhc
Q 009514          424 MYVLGNVAT--GKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       424 ~~~L~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~-~~~~v~~~a~~~L~~l~  480 (533)
                      +-++.||+.  .++.....++        ..++|.+.+.... .++++|.-|..++..|.
T Consensus       272 ~~~~~n~~~lv~~~~~~~~f~--------~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          272 AVIIDNMCKLVEDPQVIAPFL--------GKLLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHH--------TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             EEEEcchhhhcCCHHHHhhhh--------hhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            999999997  4444444444        3566666666553 68899988888887774

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.86  E-value=0.00089  Score=62.40  Aligned_cols=185  Identities=12%  Similarity=0.091  Sum_probs=129.1

Q ss_pred             HHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhh
Q 009514          190 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF  269 (533)
Q Consensus       190 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~  269 (533)
                      .+++.|.+++  .+.+..++..|..+-..+......++..+|+..|+....+.+.+.+..+..++.++=......... +
T Consensus       122 ~iiekL~~~~--~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv-v  198 (339)
T 3dad_A          122 AILEKLYSSS--GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV-V  198 (339)
T ss_dssp             HHHHHHHHCC--HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH-H
T ss_pred             HHHHHHhcCC--cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch-h
Confidence            3455566553  455677888888855567788899999999999999999999999999999999885432221111 2


Q ss_pred             hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh-------C---cHHHHHHhhc---CCCHHHHHHHH
Q 009514          270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL-------G---GVKLLVQLSK---SMDSTIRLNAL  336 (533)
Q Consensus       270 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~-------~---~i~~L~~ll~---~~~~~~~~~al  336 (533)
                      ....++..++.++.+.+..|...|+..|..++...+.+...+.++       .   -...++.+++   +.+.+++.+|+
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            245678889999998899999999999999987655444333321       1   2668888887   67899999999


Q ss_pred             HHHHHhhccCC-hHhHHHH---HHhhcH-HHHHhhhCCC--ChhHHHH
Q 009514          337 RALRNLIFLAE-DKCKEEI---FMELTA-SLLASLICDP--EPSVQEQ  377 (533)
Q Consensus       337 ~aL~~l~~~~~-~~~~~~i---~~~~~~-~~l~~lL~~~--~~~v~~~  377 (533)
                      ..+..+..+.+ .+.+..+   ++..++ ..+.++++..  +++.+++
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            88888776554 2323333   333444 3456666543  5555544

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.57  E-value=2.7e-05  Score=70.66  Aligned_cols=45  Identities=22%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             HHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHH
Q 009514          456 CIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE  523 (533)
Q Consensus       456 ~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~  523 (533)
                      .+..++.++++.||..++..+                     | .+.|..| +|++..|++.|..+|+
T Consensus       198 ~L~~Ll~D~d~~VR~~aa~~l---------------------~-~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          198 DLLELLHDPDWTVRLAAVEHA---------------------S-LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             GGGGGGGCSSHHHHHHHHHHS---------------------C-HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             HHHHHHcCCCHHHHHHHHHcC---------------------C-HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            455566777777777776542                     1 3566667 8888899988876654

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.48  E-value=0.2  Score=55.35  Aligned_cols=460  Identities=9%  Similarity=0.110  Sum_probs=226.9

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQ   94 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~   94 (533)
                      ..+..++.-+-+++...+..|-..|..+-..++         +......+|..  ++.+|--|+..|.+.....   +..
T Consensus        28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~---W~~   95 (1073)
T 3gjx_A           28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTR---WKI   95 (1073)
T ss_dssp             HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHT---GGG
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh---hhh
Confidence            345556655556677777778788877665443         33444555553  6789999998888765421   111


Q ss_pred             hccccCcccHH-HHHHHHh----c-----CChhhHHHHHHHHHHhhhcC-CCcchhhhhHhhhHHHHHHhcCCCCchhhh
Q 009514           95 FVGPDTGRTLS-CIIEIVK----D-----RFARTRLLASLCLIVIRNAS-PCYLQDVGIKTKLINNLLELLDDPGRVGDE  163 (533)
Q Consensus        95 ~~~~~~~~~i~-~l~~ll~----~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  163 (533)
                      +.. .....+. .++.++.    +     .++.++..-+.++..++... +.      .+.+.++-++++++.++.....
T Consensus        96 L~~-e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~------~Wp~fi~dLv~~~~~~~~~~~~  168 (1073)
T 3gjx_A           96 LPR-NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK------HWPTFISDIVGASRTSESLCQN  168 (1073)
T ss_dssp             SCH-HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHHHCHHHHHH
T ss_pred             CCH-HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh------hccHHHHHHHHHhCCCHHHHHH
Confidence            100 0001111 2333322    2     23455555666666666542 21      2456777777777543333344


Q ss_pred             HHHHHHhhhcC---CH----------HHHHHHHHcCcHHHHH----HhhhcCCCCchhHHHHHHHHHHhhccchhhhHhh
Q 009514          164 ASFAFSSLIAE---KE----------DMQKLAFEVNGVDKLY----NHLQKGSLHPRRFEGILLALADMCSKLECCRSRC  226 (533)
Q Consensus       164 a~~~L~~l~~~---~~----------~~~~~~~~~~~l~~L~----~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~  226 (533)
                      ...+|..+.++   ..          ..+..+.+ . .+.++    .+|.+. .++.+...++.+++....--+  -..+
T Consensus       169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~-~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~--i~~i  243 (1073)
T 3gjx_A          169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN-E-FSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIP--LGYI  243 (1073)
T ss_dssp             HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC--THHH
T ss_pred             HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-H-HHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcC--HHHh
Confidence            55555555432   10          01111222 1 33333    444444 356677778888888775322  2456


Q ss_pred             hhhchHHHH-HHhcCCCCHHHHHHHHHHHHHHhhc-cccccchhhh--hcCcHHHHHHhh-------------cCCCHHH
Q 009514          227 LSLQVLKLV-VDALAHDSSDVRSAACMCLRSVSRS-IKNLSAGSFM--NETIVIPLVRLL-------------DDTSTAV  289 (533)
Q Consensus       227 ~~~~~l~~l-~~~L~~~~~~v~~~a~~~L~~ls~~-~~~~~~~~~~--~~~~i~~Lv~lL-------------~~~~~~v  289 (533)
                      ++.+.++.+ ..+|  .++.+|..|+.||..+... .++.... +.  =.+++..+-.++             .+.|++.
T Consensus       244 ~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~-~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~  320 (1073)
T 3gjx_A          244 FETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQ-FETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNF  320 (1073)
T ss_dssp             HSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHH-HHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHH
T ss_pred             ccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHH-HHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHH
Confidence            677888887 4666  4678999999999998653 1111111 10  011111111222             1223344


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHhC---------cHHHHHHhhcCCCHHHHHHHHHHH----HHhhccC------Ch--
Q 009514          290 QVAALGAISNIVVDFTTRRSTFIRLG---------GVKLLVQLSKSMDSTIRLNALRAL----RNLIFLA------ED--  348 (533)
Q Consensus       290 ~~~a~~aL~nl~~~~~~~~~~~~~~~---------~i~~L~~ll~~~~~~~~~~al~aL----~~l~~~~------~~--  348 (533)
                      ...-+..+..+...   +. .+++.+         ++..++.....++.++-..++..=    ..+....      ++  
T Consensus       321 ~~~l~~~f~~~~e~---~~-~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~  396 (1073)
T 3gjx_A          321 IQNLSLFLCTFLKE---HG-QLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLL  396 (1073)
T ss_dssp             HHHHHHHHHHHHHH---HH-HHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCT
T ss_pred             HHHHHHHHHHHHHH---HH-HHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence            44444444443321   11 122211         333445555566777666555332    2222111      00  


Q ss_pred             --------HhHHHHHHh---hcHHHHHhhhCCCC-------------------h------hHHHHHHHHHHHhhcCCcch
Q 009514          349 --------KCKEEIFME---LTASLLASLICDPE-------------------P------SVQEQALALVRNLVDGRINS  392 (533)
Q Consensus       349 --------~~~~~i~~~---~~~~~l~~lL~~~~-------------------~------~v~~~a~~~L~~l~~~~~~~  392 (533)
                              ..+..+...   .....++.-+.-|+                   .      +....++..+.++..   + 
T Consensus       397 ~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~---~-  472 (1073)
T 3gjx_A          397 SGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDY---V-  472 (1073)
T ss_dssp             TSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCH---H-
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCH---H-
Confidence                    012111110   11222222222111                   0      122223333332221   1 


Q ss_pred             HHHHHhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCChhh-HHHHHHHhhHhhhhhhHHHHHHhhccC-----C
Q 009514          393 VEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESH-KEAVMDQLLLRAENKAQSCIIKFLQSN-----D  465 (533)
Q Consensus       393 ~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~lv~~L~~~-----~  465 (533)
                        .++.   ++++.+.+.+.++ .++...+.++|+++.++..-... -+.++        ..+++.|+.+...+     .
T Consensus       473 --~~~~---i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L--------p~vi~~Ll~L~e~~~~kd~k  539 (1073)
T 3gjx_A          473 --DTEI---IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL--------VTVIKDLLGLCEQKRGKDNK  539 (1073)
T ss_dssp             --HHHH---HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHHHHSCSHHHH
T ss_pred             --HHHH---HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH--------HHHHHHHhcccccccccchh
Confidence              1111   1344454444442 45788899999999998532211 22333        35666777766543     2


Q ss_pred             hhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          466 SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       466 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      ..++...+|++++++.-    ...+...+  ..++..|.+...++++.|++.|..|+..|.+-..
T Consensus       540 ~~vas~i~~vlgrY~~w----l~~h~~~L--~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~  598 (1073)
T 3gjx_A          540 AIIASNIMYIVGQYPRF----LRAHWKFL--KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR  598 (1073)
T ss_dssp             HHHHHHHHHHHHHCHHH----HHHCHHHH--HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHhhhHHH----HHhCHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            34566677999988830    11222332  1245566666678899999999999999876543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.013  Score=54.55  Aligned_cols=189  Identities=15%  Similarity=0.129  Sum_probs=123.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc--chhhh-hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh-
Q 009514          232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS--AGSFM-NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR-  307 (533)
Q Consensus       232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~--~~~~~-~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~-  307 (533)
                      +| +-+-|.+.+|..|..|...|..+....+...  ...+. -....+.+-+.+.+.+..++..++.++..++...... 
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            44 5678899999999999999887754322111  00011 1233455666888999999999999999887643221 


Q ss_pred             --H--HHHHHhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHH
Q 009514          308 --R--STFIRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV  382 (533)
Q Consensus       308 --~--~~~~~~~~i~~L~~-ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L  382 (533)
                        .  ....-...++.|+. .+.+....++..+..++..++....+  .     ...++.+...+.+.+++++..++..|
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~-----~~~~e~l~~~l~~Knpkv~~~~l~~l  163 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--I-----TQSVELVIPFFEKKLPKLIAAAANCV  163 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--S-----HHHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--H-----HHHHHHHHHHHhccCHHHHHHHHHHH
Confidence              1  11122346677775 47788889999999888877653321  0     11246677888999999999999888


Q ss_pred             HHhhcC--Cc-chHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          383 RNLVDG--RI-NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       383 ~~l~~~--~~-~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                      ..+...  .. -.....+..   +++.+.+++.+ +++.||..|..++..+..
T Consensus       164 ~~~l~~fg~~~~~~k~~l~~---i~~~l~k~l~d-~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          164 YELMAAFGLTNVNVQTFLPE---LLKHVPQLAGH-GDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHTTTTCCHHHHHHH---HGGGHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCcCCchhHHHH---HHHHHHHHHhC-CcHHHHHHHHHHHHHHHH
Confidence            877632  11 011111111   44556677777 899999999998877654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.01  Score=55.16  Aligned_cols=187  Identities=10%  Similarity=0.093  Sum_probs=122.9

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCchhH--HHHH--HhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChH----
Q 009514          278 LVRLLDDTSTAVQVAALGAISNIVVDFTTRR--STFI--RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK----  349 (533)
Q Consensus       278 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~--~~~~--~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~----  349 (533)
                      |-+-|.+.++..|..|...+..+........  ....  -....+.+-..+.+.|..+...++.++..++......    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            6678889999999999999988775433211  0111  0133455667788999999999999999887643321    


Q ss_pred             hHHHHHHhhcHHHHHh-hhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHH
Q 009514          350 CKEEIFMELTASLLAS-LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG  428 (533)
Q Consensus       350 ~~~~i~~~~~~~~l~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~  428 (533)
                      ......-...++.++. .+.+....++..+..++..++..... ...       +++.+...+.+ .++.++..++..|.
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-~~~-------~~e~l~~~l~~-Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-ITQ-------SVELVIPFFEK-KLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-SHH-------HHHHHGGGGGC-SCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-HHH-------HHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence            1112222334566654 57888999999999888777644211 011       34455555666 88999999988887


Q ss_pred             Hhcc--CChh-hHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514          429 NVAT--GKES-HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       429 ~l~~--~~~~-~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~  481 (533)
                      .+..  |... .....+        ..+++.+..++.++|..||.+|..++..+-.
T Consensus       165 ~~l~~fg~~~~~~k~~l--------~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          165 ELMAAFGLTNVNVQTFL--------PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHTTTTCCHHHHH--------HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcCCchhHH--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            7654  1111 122222        2456788889999999999999999987764

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.25  E-value=0.00022  Score=64.59  Aligned_cols=43  Identities=19%  Similarity=0.191  Sum_probs=27.0

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514          235 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGA  296 (533)
Q Consensus       235 l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~a  296 (533)
                      +..+++++++.||..++..|       +            .+.|..+++++++.|+..++..
T Consensus        79 l~~L~~D~~~~VR~~aA~~L-------~------------~~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A           79 LTPLIRDSDEVVRRAVAYRL-------P------------REQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS-------C------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHccCcCHHHHHHHHHHC-------C------------HHHHHHHHcCCCHHHHHHHHHh
Confidence            45566777788877776432       0            1235556677777777776664

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.24  E-value=0.33  Score=53.61  Aligned_cols=426  Identities=10%  Similarity=0.064  Sum_probs=214.7

Q ss_pred             cccchHHHHhhhcC-CCcchhHHHHHHHHHhhcC-----chhHHHHHhcCchHHHHHhhcC------ChHHHHHHHHHHH
Q 009514           15 QEENMEFLLSLLNN-ESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIA   82 (533)
Q Consensus        15 ~~~~i~~L~~lL~~-~~~~v~~~a~~~l~~~~~~-----~~~~~~i~~~g~i~~L~~lL~~------~~~v~~~al~aL~   82 (533)
                      .+++++.+..+|.+ .++.+|..|+.+|.+....     +.....-.+...+..+.+.-.+      +..++.+...+++
T Consensus        58 sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La  137 (1073)
T 3gjx_A           58 HPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILV  137 (1073)
T ss_dssp             CSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHH
Confidence            35778888888874 4788899999999986642     2333333444455555554332      2456677777787


Q ss_pred             HHhcC-ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCc------------chhhhhH--hhhH
Q 009514           83 TIFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY------------LQDVGIK--TKLI  147 (533)
Q Consensus        83 ~l~~~-~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------------~~~~~~~--~~~i  147 (533)
                      .++.. -|+.+        .+.++.++.++++ ++........+|..+...-...            .++.+..  ..++
T Consensus       138 ~I~k~~~P~~W--------p~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il  208 (1073)
T 3gjx_A          138 QILKQEWPKHW--------PTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIF  208 (1073)
T ss_dssp             HHHHHHTTTTC--------TTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhChhhc--------cHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence            77643 33333        3567778877764 3444556677777665431000            0111111  1223


Q ss_pred             HHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHH-HhhhcCCCCchhHHHHHHHHHHhhccc-hhhh
Q 009514          148 NNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-NHLQKGSLHPRRFEGILLALADMCSKL-ECCR  223 (533)
Q Consensus       148 ~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-~~L~~~~~~~~~~~~a~~aL~~l~~~~-~~~~  223 (533)
                      +.+...+.  .++.+...+..++......-+-  ..+++.+.++.++ ..|.    ++..+..|+.+|..+.+.+ +...
T Consensus       209 ~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i--~~i~~~~ll~~L~~~~L~----~~~~r~aA~dcL~eIv~k~~~~~~  282 (1073)
T 3gjx_A          209 QLCQFVMENSQNAPLVHATLETLLRFLNWIPL--GYIFETKLISTLIYKFLN----VPMFRNVSLKCLTEIAGVSVSQYE  282 (1073)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHHHTSS----SHHHHHHHHHHHHHHHHSCSGGGH
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH--HHhccchHHHHHHHHhcC----ChHHHHHHHHHHHHHHhccccchH
Confidence            33333333  2334445566777766654321  2355666667663 5442    3678999999999987642 1221


Q ss_pred             Hhhhh--hchHHHHHHhc-------------CCCCHHHHHHHHHHHHHHhhccccccchhhhhc--C-------cHHHHH
Q 009514          224 SRCLS--LQVLKLVVDAL-------------AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNE--T-------IVIPLV  279 (533)
Q Consensus       224 ~~~~~--~~~l~~l~~~L-------------~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~--~-------~i~~Lv  279 (533)
                      ..+..  .+.+..+..++             .+.+++....-+..+..+....-.     +++.  +       ++..|+
T Consensus       283 ~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~-----lIe~~p~~~~~l~~~l~~ll  357 (1073)
T 3gjx_A          283 EQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQ-----LLEKRLNLREALMEALHYML  357 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHH-----HHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH-----HHhcCccchHHHHHHHHHHH
Confidence            22211  12222222222             122334445556666655443111     1111  1       223344


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhc----CC------c-----------hhHHHHHH---hCcHHHHHHhhcCCC-------
Q 009514          280 RLLDDTSTAVQVAALGAISNIVV----DF------T-----------TRRSTFIR---LGGVKLLVQLSKSMD-------  328 (533)
Q Consensus       280 ~lL~~~~~~v~~~a~~aL~nl~~----~~------~-----------~~~~~~~~---~~~i~~L~~ll~~~~-------  328 (533)
                      .+-..++.++...+...=..+..    ..      .           ..+..+..   ...+..++.-+..+.       
T Consensus       358 ~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~  437 (1073)
T 3gjx_A          358 LVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVEN  437 (1073)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEEC
T ss_pred             HHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCc
Confidence            44457788887776644222221    10      0           01111110   122333333333221       


Q ss_pred             -------------HH-----HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcC
Q 009514          329 -------------ST-----IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       329 -------------~~-----~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~  388 (533)
                                   ..     .-..++..+.++    +++   .... ...+.+.+.+.  ..++...+.++|+++.++..
T Consensus       438 e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l----~~~---~~~~-i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~  509 (1073)
T 3gjx_A          438 DQGEVVREFMKDTDSINLYKNMRETLVYLTHL----DYV---DTEI-IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGA  509 (1073)
T ss_dssp             SSSCEEEEECSSCHHHHHHHHHHHHHHHHHHH----CHH---HHHH-HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTS
T ss_pred             ccchHHHHHHhhcchHHHHHHHHHHHHHHhcC----CHH---HHHH-HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCc
Confidence                         00     111122222222    111   1111 11233333333  35699999999999999844


Q ss_pred             Ccch-HHHHHhhcCchHHHHHHHhccCC-----chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514          389 RINS-VEYIFAEDGIILDAVGRQLRIAS-----KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  462 (533)
Q Consensus       389 ~~~~-~~~i~~~~~~~~~~L~~~L~~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~  462 (533)
                      -.+. -+.++..   +++.|..+..+ +     +..+....+|+++.++.--..+ ..++        ...+..+.+.+.
T Consensus       510 ~~~~~E~~~Lp~---vi~~Ll~L~e~-~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L--------~~vl~~L~~~m~  576 (1073)
T 3gjx_A          510 MHEEDEKRFLVT---VIKDLLGLCEQ-KRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFL--------KTVVNKLFEFMH  576 (1073)
T ss_dssp             SCHHHHHHHHHH---HHHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHH--------HHHHHHHHHHTT
T ss_pred             CCcccccchHHH---HHHHHhccccc-ccccchhHHHHHHHHHHHhhhHHHHHhC-HHHH--------HHHHHHHHHHHh
Confidence            3321 2222221   66666665544 2     2335566778998876421111 1222        245567778888


Q ss_pred             cCChhHHHHHHHHHHhhcC
Q 009514          463 SNDSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       463 ~~~~~v~~~a~~~L~~l~~  481 (533)
                      ++++.|+..|+.++..++.
T Consensus       577 ~~~~~vq~aA~~af~~i~~  595 (1073)
T 3gjx_A          577 ETHDGVQDMACDTFIKIAQ  595 (1073)
T ss_dssp             CCSTTHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999885

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.18  E-value=0.0059  Score=55.63  Aligned_cols=134  Identities=10%  Similarity=0.082  Sum_probs=97.7

Q ss_pred             CchhHHHHHHHHHHhhccc--hhhhHhhhh-hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHH
Q 009514          201 HPRRFEGILLALADMCSKL--ECCRSRCLS-LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP  277 (533)
Q Consensus       201 ~~~~~~~a~~aL~~l~~~~--~~~~~~~~~-~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~  277 (533)
                      ++.+...++..|..+...-  ..++-.-.+ .-.+|.+++-+.+....+|..+-.++..+....+        -..+.+.
T Consensus       100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--------~~~v~~~  171 (266)
T 2of3_A          100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--------PLKMTPM  171 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--------HHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--------HHHHHHH
Confidence            4666677777776654211  111111112 2478999999999999999999999888764311        1245677


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcH---HHHHHhhcCCCHHHHHHHHHHHHHhhccCC
Q 009514          278 LVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV---KLLVQLSKSMDSTIRLNALRALRNLIFLAE  347 (533)
Q Consensus       278 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i---~~L~~ll~~~~~~~~~~al~aL~~l~~~~~  347 (533)
                      ++.-+++.++.++..++..+..+...++..     ...++   +.+..++.++|..+|..|+.++..+-...+
T Consensus       172 l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G  239 (266)
T 2of3_A          172 LLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG  239 (266)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence            888889999999999999999988654433     24578   999999999999999999999987755444

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.17  E-value=0.015  Score=52.92  Aligned_cols=168  Identities=12%  Similarity=0.068  Sum_probs=112.3

Q ss_pred             chhHHHHHHHHHHhhccchhhhHhhh-hhc-hHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc--ccccchhhhh-cCcHH
Q 009514          202 PRRFEGILLALADMCSKLECCRSRCL-SLQ-VLKLVVDALAHDSSDVRSAACMCLRSVSRSI--KNLSAGSFMN-ETIVI  276 (533)
Q Consensus       202 ~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~-~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~--~~~~~~~~~~-~~~i~  276 (533)
                      ..-+..++..|......++   ..+. ..+ .++.+.--+.+.|..+...+...|..+....  ...+.. -.+ .-++|
T Consensus        60 ~k~~~~ale~L~~~l~~~~---~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~-~~ea~~~lP  135 (266)
T 2of3_A           60 FKQHLAALDSLVRLADTSP---RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS-QEEVSAFVP  135 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHCH---HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhCh---HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHHH
Confidence            5556666666665443222   2222 112 2343333445789999999998888763211  111211 122 45689


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH
Q 009514          277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM  356 (533)
Q Consensus       277 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~  356 (533)
                      .|+.-+.++...+|..+-.++..+...++.       ....+.++.-+++.+..+|..++..+..+....+..      .
T Consensus       136 ~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~------~  202 (266)
T 2of3_A          136 YLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS------P  202 (266)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG------G
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC------c
Confidence            999999999999999999988777643332       124566777788999999999999999886543321      1


Q ss_pred             hhcH---HHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514          357 ELTA---SLLASLICDPEPSVQEQALALVRNLV  386 (533)
Q Consensus       357 ~~~~---~~l~~lL~~~~~~v~~~a~~~L~~l~  386 (533)
                      ...+   +.+.+++.|+|..||..|+.++..+.
T Consensus       203 ~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          203 LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3457   99999999999999999998887654

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.16  E-value=0.015  Score=57.70  Aligned_cols=244  Identities=16%  Similarity=0.150  Sum_probs=154.5

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc--ccchhhhhcCcHHHHHHhh--c-------C-CCHHHHHHHHHHHH
Q 009514          231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN--LSAGSFMNETIVIPLVRLL--D-------D-TSTAVQVAALGAIS  298 (533)
Q Consensus       231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~--~~~~~~~~~~~i~~Lv~lL--~-------~-~~~~v~~~a~~aL~  298 (533)
                      ....|+.-|-++.|++|..|+.+|+.+-+..+.  .+.. -......-.|+-.+  +       + .-..||+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~-~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQI-RVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCC-CCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceec-cccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            667778888899999999999999999765432  1111 11123333333333  1       1 13579999999999


Q ss_pred             HHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHH
Q 009514          299 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA  378 (533)
Q Consensus       299 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a  378 (533)
                      .+ ..-+..      ..++..++..+..+..++|..++-.|..+..-..     .  -.+.++.++..|.+.|.+|+..|
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~-----~--Ld~Vv~aVL~GL~D~DDDVRAVA  319 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE-----D--KDGLCRKLVSLLSSPDEDIKLLS  319 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC-----C--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH-----H--HHHHHHHHHhhcCCcccHHHHHH
Confidence            98 543332      3556666666677889999999999998822111     1  13447778888999999999999


Q ss_pred             HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc-hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHH
Q 009514          379 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK-AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI  457 (533)
Q Consensus       379 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  457 (533)
                      +.+|.-++  .++.+..       ++..+...|.+..+ .......+..|+.+.......   ..       +...+|.|
T Consensus       320 AetLiPIA--~p~~l~~-------LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~-------dp~LVPRL  380 (800)
T 3oc3_A          320 AELLCHFP--ITDSLDL-------VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SI-------PPERLKDI  380 (800)
T ss_dssp             HHHHTTSC--CSSTHHH-------HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CC-------CSGGGGGT
T ss_pred             HHHhhhhc--chhhHHH-------HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---cc-------ChHHHHHH
Confidence            99999888  3443333       33444444443111 122333444555554322110   00       14677999


Q ss_pred             HHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHH
Q 009514          458 IKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL  522 (533)
Q Consensus       458 v~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL  522 (533)
                      --+++++-+.||.++..++..+..    +   ..-+       -.+++++-++++++++.+..+.
T Consensus       381 ~PFLRHtITSVR~AVL~TL~tfL~----~---~~LR-------LIFQNILLE~neeIl~lS~~VW  431 (800)
T 3oc3_A          381 FPCFTSPVPEVRTSILNMVKNLSE----E---SIDF-------LVAEVVLIEEKDEIREMAIKLL  431 (800)
T ss_dssp             GGGGTCSSHHHHHHHHHHTTTCCC----H---HHHH-------HHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HhhhcCCcHHHHHHHHHHHHHHHh----h---hHHH-------HHHHHHHhCCcHHHHHHHHHHH
Confidence            999999999999999999988872    1   1111       2456666666777777655544

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.05  E-value=0.0049  Score=60.99  Aligned_cols=252  Identities=13%  Similarity=0.067  Sum_probs=141.8

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHc
Q 009514          106 CIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEV  185 (533)
Q Consensus       106 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (533)
                      .++.-+-++..++|..|+..|+.+.+......       |-.       .....  .-|++.+.-++-|           
T Consensus       178 ~L~~DLFdp~WEiRHGAALGLREILR~hG~GA-------GR~-------~~~N~--DLAvRLLCVLALD-----------  230 (800)
T 3oc3_A          178 QISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-------DIQ-------IRVDS--KLFSKIYEILVTD-----------  230 (800)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCCT--THHHHHHHHHHHB-----------
T ss_pred             HHHHHhcCcchhhhhHHHHHHHHHHHHhccCC-------cee-------ccccH--HHHHHHHHHHHhc-----------
Confidence            34444557788899999999998877542100       000       10000  2233333322211           


Q ss_pred             CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc
Q 009514          186 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       186 ~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~  265 (533)
                          .+-++..+. .-..+||.|+.+|+.+ .+-+.-      ..++..++..+..+.|++|..+.-.|..+ .  +-..
T Consensus       231 ----RFGDYVSDq-VVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~--DLL~  295 (800)
T 3oc3_A          231 ----KFNDFVDDR-TVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K--EFVE  295 (800)
T ss_dssp             ----CCBBCSSSS-CBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G--GGCC
T ss_pred             ----cccccccCe-eeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H--HHHH
Confidence                122222222 2344789999999888 543321      35566666666788899999988888888 1  1111


Q ss_pred             chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CH-HHHHHHHHHHHHhh
Q 009514          266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DS-TIRLNALRALRNLI  343 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~-~~~~~al~aL~~l~  343 (533)
                       .   -.++++.++..|++.|.+|+..|+.+|.-++ .. ....     ..+..+...+.+- +- .-....+..|+.|+
T Consensus       296 -~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p-~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~  364 (800)
T 3oc3_A          296 -D---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-IT-DSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIY  364 (800)
T ss_dssp             -C---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CS-STHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHH
T ss_pred             -H---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-ch-hhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Confidence             0   2466778888888889999999999998777 22 2111     2334444444432 11 11222334445544


Q ss_pred             ccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHH
Q 009514          344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG  423 (533)
Q Consensus       344 ~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a  423 (533)
                      .......    .....+|.|..++.++-..||..++.+|..+..+  +           ++..+.+.+--.++++|+..+
T Consensus       365 s~p~~a~----~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~~--~-----------~LRLIFQNILLE~neeIl~lS  427 (800)
T 3oc3_A          365 RENPELS----IPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEE--S-----------IDFLVAEVVLIEEKDEIREMA  427 (800)
T ss_dssp             HHCTTCC----CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCCH--H-----------HHHHHHHHHHHCSCHHHHHHH
T ss_pred             cCCcccc----cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhh--h-----------HHHHHHHHHHhCCcHHHHHHH
Confidence            3221100    0125688899999999999999999988777611  1           333333322222667777666


Q ss_pred             HHHH
Q 009514          424 MYVL  427 (533)
Q Consensus       424 ~~~L  427 (533)
                      ..+-
T Consensus       428 ~~VW  431 (800)
T 3oc3_A          428 IKLL  431 (800)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.92  E-value=0.024  Score=50.09  Aligned_cols=147  Identities=18%  Similarity=0.075  Sum_probs=106.3

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhc-CCchh
Q 009514          230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVV-DFTTR  307 (533)
Q Consensus       230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~-~~~~~  307 (533)
                      ..++....+.+++..++|..|+.+|+.+ ..          ....++.+-. +-.+++..|++.++.++..++. ..++ 
T Consensus        71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~----------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-  138 (240)
T 3l9t_A           71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK----------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-  138 (240)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT----------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHHHHhc-cC----------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence            3466677788889999999999988776 21          1235566665 4468899999999999998874 2222 


Q ss_pred             HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514          308 RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  387 (533)
Q Consensus       308 ~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~  387 (533)
                             ..++.+...+++++..+|..|+..+.-.+..  +..+  .-....++.+-.+..|++..||....+.|+.++.
T Consensus       139 -------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK  207 (240)
T 3l9t_A          139 -------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK  207 (240)
T ss_dssp             -------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred             -------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence                   2567788899999999999998776443221  1000  0012246777778889999999999999999999


Q ss_pred             CCcchHHHHHhh
Q 009514          388 GRINSVEYIFAE  399 (533)
Q Consensus       388 ~~~~~~~~i~~~  399 (533)
                      .+|+.+..++..
T Consensus       208 ~~Pd~V~~~~~~  219 (240)
T 3l9t_A          208 KFPDLVKIELKN  219 (240)
T ss_dssp             TCHHHHHHHHHT
T ss_pred             hCHHHHHHHHHH
Confidence            999866555543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.90  E-value=0.24  Score=45.93  Aligned_cols=127  Identities=23%  Similarity=0.257  Sum_probs=97.6

Q ss_pred             HhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHH
Q 009514          214 DMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVA  292 (533)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~  292 (533)
                      ++-.++....+-+++.+++..+-..++-++.++..+.++.|...+.. ..++..  --...+|-+++.++ +++.++.++
T Consensus       268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~t--~L~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAKT--PLENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGTS--CCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhhc--cccccchHHHHHhccCCCcceEEe
Confidence            34445556667888999999999999999999999999999999876 344432  23466788888886 899999999


Q ss_pred             HHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-CC------CH-------HHHHHHHHHHHHhh
Q 009514          293 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SM------DS-------TIRLNALRALRNLI  343 (533)
Q Consensus       293 a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~------~~-------~~~~~al~aL~~l~  343 (533)
                      ..+.|+|...+..+.++..+..|+|+.|..... .+      +.       .+..++++++.|+.
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFL  409 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFL  409 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhe
Confidence            999999999888888888888999999887543 22      11       24456667777664

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.90  E-value=1.1  Score=49.83  Aligned_cols=169  Identities=13%  Similarity=0.155  Sum_probs=110.1

Q ss_pred             hHHHHHHhcCC----CCHHHHHHHHHHHHHHhhcc---ccccchhhhhcCcHHHHHH----hhcCCCHHHHHHHHHHHHH
Q 009514          231 VLKLVVDALAH----DSSDVRSAACMCLRSVSRSI---KNLSAGSFMNETIVIPLVR----LLDDTSTAVQVAALGAISN  299 (533)
Q Consensus       231 ~l~~l~~~L~~----~~~~v~~~a~~~L~~ls~~~---~~~~~~~~~~~~~i~~Lv~----lL~~~~~~v~~~a~~aL~n  299 (533)
                      .+..+..++++    .++.++..+.-+++.|.+..   ...|     ....++.+..    .+...+.+-+..++.+|+|
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGN  466 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence            46666677765    46678888888887776431   1112     1233445444    4456778889999999999


Q ss_pred             HhcCCchhHHHHHHhCcHHHHHHhhcC-------CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh--CCC
Q 009514          300 IVVDFTTRRSTFIRLGGVKLLVQLSKS-------MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI--CDP  370 (533)
Q Consensus       300 l~~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL--~~~  370 (533)
                      +-.  +         ..++.|..++..       ....+|..|+++|.++.... |.        ...+.++++.  ...
T Consensus       467 ~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~--------~v~~il~~i~~n~~e  526 (1056)
T 1lsh_A          467 AGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PR--------KVQEIVLPIFLNVAI  526 (1056)
T ss_dssp             HTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HH--------HHHHHHHHHHHCTTS
T ss_pred             cCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hH--------HHHHHHHHHhcCCCC
Confidence            974  2         346666666532       24578899999999997532 21        1234556666  456


Q ss_pred             ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChh
Q 009514          371 EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES  436 (533)
Q Consensus       371 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~  436 (533)
                      ++++|..|+..|-..   +|..         ..+..+...+...++.+|.......|.+++.....
T Consensus       527 ~~EvRiaA~~~Lm~t---~P~~---------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          527 KSELRIRSCIVFFES---KPSV---------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             CHHHHHHHHHHHHHT---CCCH---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             ChHHHHHHHHHHHHH---CcCH---------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            789998888776432   2211         05666667777767888888888888888876543

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.84  E-value=0.11  Score=45.90  Aligned_cols=140  Identities=14%  Similarity=0.112  Sum_probs=96.6

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc-C-ChHHHHHHHHHHHHHhc-CChhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-G-SLIQRDASLESIATIFK-NNPEVVS   93 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~-~-~~~v~~~al~aL~~l~~-~~~~~~~   93 (533)
                      ..++....|.+++.+++|..|+.+|... ...        ...++.+...+. . +..||+.+..+++.++. .+++   
T Consensus        71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            3445556666677899999999988877 211        224555555333 3 67999999999999885 3332   


Q ss_pred             hhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC-chhhhHHHHHHhhh
Q 009514           94 QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLI  172 (533)
Q Consensus        94 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~a~~~L~~l~  172 (533)
                              ..++.+....+++++.+|..|...+.-.+.. +. .  ..--.-++|.|-.+..|++ -++...++.|..++
T Consensus       139 --------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~-~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S  206 (240)
T 3l9t_A          139 --------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PY-F--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS  206 (240)
T ss_dssp             --------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TT-T--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-ch-h--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence                    2466788899999999999998887654432 11 1  1112346676666666654 57888899999999


Q ss_pred             cCCHHHHH
Q 009514          173 AEKEDMQK  180 (533)
Q Consensus       173 ~~~~~~~~  180 (533)
                      +.+++.-.
T Consensus       207 K~~Pd~V~  214 (240)
T 3l9t_A          207 KKFPDLVK  214 (240)
T ss_dssp             TTCHHHHH
T ss_pred             hhCHHHHH
Confidence            99988533

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.63  E-value=0.75  Score=42.81  Aligned_cols=178  Identities=10%  Similarity=0.015  Sum_probs=105.5

Q ss_pred             hhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHH----HHhhhcCCCCchhHHHHHHHHHHhhccch
Q 009514          145 KLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKL----YNHLQKGSLHPRRFEGILLALADMCSKLE  220 (533)
Q Consensus       145 ~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L----~~~L~~~~~~~~~~~~a~~aL~~l~~~~~  220 (533)
                      ..+..+.++++.+.+.+.-+...+.-++. ++.....+.+.+.-..+    ...+... ..+..+.-+++++.|+..+. 
T Consensus       103 ~~l~~l~kil~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~-~~p~n~ml~lR~l~NlF~~~-  179 (304)
T 3ebb_A          103 QQLQILWKAINCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPK-GKPANQLLALRTFCNCFVGQ-  179 (304)
T ss_dssp             HHHHHHHHHHTSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHGGGSH-
T ss_pred             HHHHHHHHHHcCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCC-CChHHHHHHHHHHHHccCCc-
Confidence            45677777776565666666666665544 44433333332222223    3333332 23556888999999998653 


Q ss_pred             hhhHhhhh--hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHH
Q 009514          221 CCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAI  297 (533)
Q Consensus       221 ~~~~~~~~--~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL  297 (533)
                      ..+..+..  ..+++.+...+.+.+..+|.+++.++.|++-...+.+.. =....++..+..+++ ..|.|....++.||
T Consensus       180 ~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~-~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          180 AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI-EGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            45555443  246667777777789999999999999997542211111 011223444455554 46899999999999


Q ss_pred             HHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514          298 SNIVVDFTTRRSTFIRLGGVKLLVQLSKS  326 (533)
Q Consensus       298 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~~  326 (533)
                      +++.......++....-|+-..+-++...
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99997655444333333443333344443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.40  E-value=1.4  Score=39.28  Aligned_cols=185  Identities=14%  Similarity=0.183  Sum_probs=111.8

Q ss_pred             chhHHHHHHHHHHhhccchhhhHhhh-hhchHHHHHH-------hcCCC--CHHHHHHHH---HHHHHHhhccccccchh
Q 009514          202 PRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVD-------ALAHD--SSDVRSAAC---MCLRSVSRSIKNLSAGS  268 (533)
Q Consensus       202 ~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~l~~-------~L~~~--~~~v~~~a~---~~L~~ls~~~~~~~~~~  268 (533)
                      ++.|+.|+..|+.--..-++..-.+. ..|.+..+++       .+..+  +...-...|   ..|..++.+ +..+.. 
T Consensus        15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~-   92 (268)
T 2fv2_A           15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA-   92 (268)
T ss_dssp             TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH-
T ss_pred             chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH-
Confidence            45688887666643222222222222 3355555443       22222  122222233   334455655 667777 


Q ss_pred             hhhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhc-CCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009514          269 FMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVV-DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL  342 (533)
Q Consensus       269 ~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l  342 (533)
                      |..+.+.-.|..+|+..     .+-+|-.+++.++.++. +.++....+.+.+++|..++.++.+++-.|..|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            88888888888888633     35789999999999986 4455667888999999999999999998899999999888


Q ss_pred             hccCCh-------HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          343 IFLAED-------KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       343 ~~~~~~-------~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                      ..+...       ..|...+..-.-..+..+.+++++.+....+++...++++
T Consensus       173 L~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          173 LLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             hccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            652210       0111111111112223344566777777777766666654

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.26  E-value=0.32  Score=47.60  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=69.1

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 009514          231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST  310 (533)
Q Consensus       231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~  310 (533)
                      .+..++.+..+.+..+|.+|.+.|..++.. +.       -..+...|+++|..+++.-....-++|..+....+.    
T Consensus        66 Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~-------i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk----  133 (507)
T 3u0r_A           66 AINAQLDLCEDEDVSIRRQAIKELPQFATG-EN-------LPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK----  133 (507)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TC-------HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH----
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hh-------hhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH----
Confidence            345556666677888999999999888876 22       235677899999999988888888888877753322    


Q ss_pred             HHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514          311 FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI  343 (533)
Q Consensus       311 ~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~  343 (533)
                          +.+..+...+..+++.+|+.++..|..=.
T Consensus       134 ----~tl~~lf~~i~~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          134 ----GTLGGLFSQILQGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             ----HHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred             ----HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence                33444544444467889999998886543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=95.23  E-value=2.5  Score=41.37  Aligned_cols=125  Identities=16%  Similarity=0.170  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHH
Q 009514          241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLL  320 (533)
Q Consensus       241 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L  320 (533)
                      .++...+.-|+..|..+-...+.+      ....+..++.+++++|..+|..|...|-.++.+  ++.     ..+...|
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l------~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i-----~kiaDvL  105 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPEL------ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL-----PRVADIL  105 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGG------HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh-----hhHHHHH
Confidence            346888999999999988776654      345788999999999999999999999999976  332     2456788


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514          321 VQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD  387 (533)
Q Consensus       321 ~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~  387 (533)
                      +++++.+++.-....-++|..+... ++        .+.+..+...+..+++.+|+.++..|+.-..
T Consensus       106 ~QlLqtdd~~E~~~V~~sL~sllk~-Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~  163 (507)
T 3u0r_A          106 TQLLQTDDSAEFNLVNNALLSIFKM-DA--------KGTLGGLFSQILQGEDIVRERAIKFLSTKLK  163 (507)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHHH-CH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHhccchHHHHHHHHHHHHHHhc-Ch--------HHHHHHHHHHHcccchHHHHHHHHHHHHHHh
Confidence            9999988876666666666666542 22        1223344444444678899999988865543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.00  E-value=2.3  Score=39.62  Aligned_cols=203  Identities=12%  Similarity=0.141  Sum_probs=136.3

Q ss_pred             HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhh----Hhhhh-hchHHHHHHhcCCCCHHHHHHHHHHH
Q 009514          180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR----SRCLS-LQVLKLVVDALAHDSSDVRSAACMCL  254 (533)
Q Consensus       180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~----~~~~~-~~~l~~l~~~L~~~~~~v~~~a~~~L  254 (533)
                      ..+...+.+..|+..|..-  +.+.|..+...+.++.......+    ..+.. ..++..++..-..  +++-..+-..|
T Consensus        72 ~ei~~~dll~~Li~~l~~L--~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~--~diAl~~G~mL  147 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLI--DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES--PEIALNCGIML  147 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGS--CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS--TTTHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccC--CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc--chhHhHHHHHH
Confidence            3456678888888877764  46778888888887766433221    22222 2455555555443  34444444456


Q ss_pred             HHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhC---cHHHHHHhhcCCCHHH
Q 009514          255 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG---GVKLLVQLSKSMDSTI  331 (533)
Q Consensus       255 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~~  331 (533)
                      +...+. +...+. +...+....+.+.+..++-++..-|..++..+...+......++..+   ....+-.++.+++--+
T Consensus       148 Recir~-e~la~~-iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVT  225 (341)
T 1upk_A          148 RECIRH-EPLAKI-ILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVT  225 (341)
T ss_dssp             HHHHTS-HHHHHH-HHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHh-HHHHHH-HhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchh
Confidence            665555 333333 55666777889999999999999999999888776554444444433   3455667899999999


Q ss_pred             HHHHHHHHHHhhccCChH--hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          332 RLNALRALRNLIFLAEDK--CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       332 ~~~al~aL~~l~~~~~~~--~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                      |+.++..|+.+.....+.  ....+-+...+..+..+|++++..+|..|..++--...+
T Consensus       226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence            999999999987643321  123333445688889999999999999999877665544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.47  E-value=3.6  Score=39.70  Aligned_cols=127  Identities=16%  Similarity=0.164  Sum_probs=85.0

Q ss_pred             cchhhhHhhhhhchHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514          218 KLECCRSRCLSLQVLKLVVDALA-----------HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  286 (533)
Q Consensus       218 ~~~~~~~~~~~~~~l~~l~~~L~-----------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  286 (533)
                      ..-.+...+. .+|+..|+++|.           ..+...+..+.+||+.+-......... +.....+..|+..+.++.
T Consensus        98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~v-l~~~~~i~~l~~~L~s~~  175 (383)
T 3eg5_B           98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV  175 (383)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHH-HTCSSHHHHHHHTCCTTS
T ss_pred             CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHH-HcChHHHHHHHHHhCCCc
Confidence            3446666676 677888888774           123477888889998886542222222 445678899999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCc-hh-HHHHHH----------hCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccC
Q 009514          287 TAVQVAALGAISNIVVDFT-TR-RSTFIR----------LGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLA  346 (533)
Q Consensus       287 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~~----------~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~  346 (533)
                      +.++..+...|.-++.... .. .+.+++          ..-...++..+++ .+.+.+.+++..+..+..+.
T Consensus       176 ~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~  248 (383)
T 3eg5_B          176 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA  248 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC
Confidence            9999999999988886543 22 223322          2334556777775 46777877777777776543

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.47  E-value=2.5  Score=37.61  Aligned_cols=127  Identities=16%  Similarity=0.185  Sum_probs=81.8

Q ss_pred             cchhhhHhhhhhchHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514          218 KLECCRSRCLSLQVLKLVVDALAH----D-------SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  286 (533)
Q Consensus       218 ~~~~~~~~~~~~~~l~~l~~~L~~----~-------~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  286 (533)
                      .+..+.+.+ ..+|+..|+++|..    +       +...+..+.+||..+.......... +...+.+..|...|.+++
T Consensus        32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~v-l~~~~~i~~l~~~L~s~~  109 (233)
T 2f31_A           32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV  109 (233)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHH-HTSSSHHHHHHTTCCTTS
T ss_pred             CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHH-HcCcHHHHHHHHHhCCCC
Confidence            445666677 56787777777642    1       3466778888888886542222222 345677889999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCc-hh-HHHHHH----------hCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccC
Q 009514          287 TAVQVAALGAISNIVVDFT-TR-RSTFIR----------LGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLA  346 (533)
Q Consensus       287 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~~----------~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~  346 (533)
                      +.++..++..|.-++..+. .. .+.+++          ..-...+++.+++ .+.+.+.+++..+..+..+.
T Consensus       110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~  182 (233)
T 2f31_A          110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA  182 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCC
Confidence            9999999988888776443 12 223322          1233446666653 45677777777777776543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.20  E-value=3.6  Score=38.35  Aligned_cols=203  Identities=12%  Similarity=0.049  Sum_probs=138.0

Q ss_pred             hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhh--hhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHh
Q 009514          225 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF--MNETIVIPLVRLLD-DTSTAVQVAALGAISNIV  301 (533)
Q Consensus       225 ~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~--~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~  301 (533)
                      .+...+.+..++..|..-+.+.|..++.+..++-+.....+.. .  +-..-.+.|..++. -+++++...+-..|+..+
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p-~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLReci  151 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTP-TVEYICTQQNILFMLLKGYESPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCH-HHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCc-hhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence            3456688999999999999999999999999887653222211 1  00111222333332 245677777777777777


Q ss_pred             cCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh---hcHHHHHhhhCCCChhHHHHH
Q 009514          302 VDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME---LTASLLASLICDPEPSVQEQA  378 (533)
Q Consensus       302 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~---~~~~~l~~lL~~~~~~v~~~a  378 (533)
                      . ++.....++..+.+-.+.++++.++-++-..|..++..+.... ...-...+..   ......-+||.++++-.+.++
T Consensus       152 r-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H-k~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS  229 (341)
T 1upk_A          152 R-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  229 (341)
T ss_dssp             T-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             H-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-HHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence            4 5566667888888888999999999999999999998876532 2222222222   134556779999999999999


Q ss_pred             HHHHHHhhcCCcchHHHHHhh--cCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          379 LALVRNLVDGRINSVEYIFAE--DGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       379 ~~~L~~l~~~~~~~~~~i~~~--~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                      +.+|+.+..+.. ....+...  .+.-+..++.+|.+ .+..|+-.|..+.--+.+
T Consensus       230 lKLLgelLldr~-N~~vM~~Yis~~~nLkl~M~LL~d-~sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          230 LKLLGELLLDRH-NFTIMTKYISKPENLKLMMNLLRD-KSRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHHSGG-GHHHHHHHTTCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCch-HHHHHHHHhCCHHHHHHHHHHhcC-chhchhhhhhhheeeeee
Confidence            999999987633 22222222  11256777788888 888999999988765554

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.93  E-value=2.4  Score=37.77  Aligned_cols=148  Identities=15%  Similarity=0.171  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHh
Q 009514          291 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-----STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS  365 (533)
Q Consensus       291 ~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~  365 (533)
                      ..|...+..++. +++.+..+++++..--|..+++..+     +.+|..+++.++.+....+++.-..+++...++..++
T Consensus        74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            344444455665 5566778888887666677776543     5789999999999998888888888888889999999


Q ss_pred             hhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc------CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHH
Q 009514          366 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAED------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE  439 (533)
Q Consensus       366 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~------~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  439 (533)
                      .++.++.--+.-|..++..+..++. ...++....      +.++..++.-+...+++...++.+++-..++. ++..++
T Consensus       153 ime~GselSKtvAtfIlqKIL~dd~-GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~  230 (268)
T 2fv2_A          153 IMESGSELSKTVATFILQKILLDDT-GLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRARE  230 (268)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHHhccch-hHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHH
Confidence            9999999888889888888776532 222221110      01344444444445777778888888877775 333444


Q ss_pred             HH
Q 009514          440 AV  441 (533)
Q Consensus       440 ~~  441 (533)
                      .+
T Consensus       231 aL  232 (268)
T 2fv2_A          231 AL  232 (268)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.48  E-value=0.75  Score=51.12  Aligned_cols=136  Identities=16%  Similarity=0.193  Sum_probs=83.8

Q ss_pred             cHHHHHHhhcC----CCHHHHHHHHHHHHHhhccC---ChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          316 GVKLLVQLSKS----MDSTIRLNALRALRNLIFLA---EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       316 ~i~~L~~ll~~----~~~~~~~~al~aL~~l~~~~---~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                      .+..+..++++    .++.++..++-++++++...   .+.|...++. -..+.+.+.+...+.+-+..++.+|+|+...
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p  470 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQP  470 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence            34555566654    45778888888888876421   1111111111 1123344555667778888899999999753


Q ss_pred             CcchHHHHHhhcCchHHHHHHHhcc------CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514          389 RINSVEYIFAEDGIILDAVGRQLRI------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  462 (533)
Q Consensus       389 ~~~~~~~i~~~~~~~~~~L~~~L~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~  462 (533)
                        .           .++.+.+++..      +....++..|+++|.+++...+...               -+.+..+..
T Consensus       471 --~-----------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v---------------~~il~~i~~  522 (1056)
T 1lsh_A          471 --N-----------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV---------------QEIVLPIFL  522 (1056)
T ss_dssp             --G-----------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH---------------HHHHHHHHH
T ss_pred             --h-----------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH---------------HHHHHHHhc
Confidence              2           45566566542      1234688999999999986443211               145666664


Q ss_pred             --cCChhHHHHHHHHHHhhc
Q 009514          463 --SNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       463 --~~~~~v~~~a~~~L~~l~  480 (533)
                        ..++++|.+|+..|..-.
T Consensus       523 n~~e~~EvRiaA~~~Lm~t~  542 (1056)
T 1lsh_A          523 NVAIKSELRIRSCIVFFESK  542 (1056)
T ss_dssp             CTTSCHHHHHHHHHHHHHTC
T ss_pred             CCCCChHHHHHHHHHHHHHC
Confidence              457899999998886544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.05  E-value=6.1  Score=38.06  Aligned_cols=121  Identities=15%  Similarity=0.188  Sum_probs=86.4

Q ss_pred             hhhcCcHHHHHHhhc-----------CCCHHHHHHHHHHHHHHhcCCchhHHHHHH-hCcHHHHHHhhcCCCHHHHHHHH
Q 009514          269 FMNETIVIPLVRLLD-----------DTSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNAL  336 (533)
Q Consensus       269 ~~~~~~i~~Lv~lL~-----------~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~al  336 (533)
                      |. .+|+..|+.+|.           ..+...+..++.||..+.. +......++. .+.+..+...+.++++.++..++
T Consensus       106 F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~al  183 (383)
T 3eg5_B          106 FG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA  183 (383)
T ss_dssp             HH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHH
T ss_pred             HH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHH
Confidence            54 567777777763           2256888999999999884 4444545554 46788999999999999999999


Q ss_pred             HHHHHhhccCChHh-HHHHHHhh----------cHHHHHhhhCC-CChhHHHHHHHHHHHhhcCCcc
Q 009514          337 RALRNLIFLAEDKC-KEEIFMEL----------TASLLASLICD-PEPSVQEQALALVRNLVDGRIN  391 (533)
Q Consensus       337 ~aL~~l~~~~~~~~-~~~i~~~~----------~~~~l~~lL~~-~~~~v~~~a~~~L~~l~~~~~~  391 (533)
                      ..|..+|...++.. ...++++.          -...++..++. .+.+.+..++..+..+..+.++
T Consensus       184 eLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~d  250 (383)
T 3eg5_B          184 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  250 (383)
T ss_dssp             HHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCC
Confidence            99999887654332 44444432          25667777775 6788888888888888776554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=92.79  E-value=16  Score=41.32  Aligned_cols=270  Identities=14%  Similarity=0.052  Sum_probs=138.9

Q ss_pred             chHHHHhhh--cCCCcchhHHHHHHHHHhhcC-----chhHHHHHhcCchHHHHHhhc----CChHHHHHHHHHHHHHhc
Q 009514           18 NMEFLLSLL--NNESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLG----GSLIQRDASLESIATIFK   86 (533)
Q Consensus        18 ~i~~L~~lL--~~~~~~v~~~a~~~l~~~~~~-----~~~~~~i~~~g~i~~L~~lL~----~~~~v~~~al~aL~~l~~   86 (533)
                      +...+...|  .+.+..+|..|+.+|-+....     ++......+...++.+...-.    .+..+|.+...+++.++.
T Consensus        46 ~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~  125 (1204)
T 3a6p_A           46 ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIK  125 (1204)
T ss_dssp             THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHH
Confidence            444444433  344677788888888775432     222222333334444443321    245788888888888764


Q ss_pred             C-ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC--Cc---chhh----hhHh---hhHHHHHHh
Q 009514           87 N-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP--CY---LQDV----GIKT---KLINNLLEL  153 (533)
Q Consensus        87 ~-~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~---~~~~----~~~~---~~i~~L~~l  153 (533)
                      . -|+.+        .+.++.+++++++ ++..+..+..+|..+.....  ..   .+..    ....   .+++.+.++
T Consensus       126 ~d~p~~W--------p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~i  196 (1204)
T 3a6p_A          126 REWPQHW--------PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNT  196 (1204)
T ss_dssp             HHSTTTC--------TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HhCcccc--------hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 23333        4578888888876 45567778888888764310  00   0000    0111   223333333


Q ss_pred             cCCC--------------------CchhhhHHHHHHhhhcCCHHHHHHHHHcC--cHHHHHHhhhcCCCCchhHHHHHHH
Q 009514          154 LDDP--------------------GRVGDEASFAFSSLIAEKEDMQKLAFEVN--GVDKLYNHLQKGSLHPRRFEGILLA  211 (533)
Q Consensus       154 l~~~--------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~~L~~~~~~~~~~~~a~~a  211 (533)
                      +.+.                    ..+...+..++.+...--+.  ..+.+..  .++.+..++.    ++.++..|+.+
T Consensus       197 L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~----~~~lr~~A~ec  270 (1204)
T 3a6p_A          197 LQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN----EQELQLGAAEC  270 (1204)
T ss_dssp             HHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG----CTTTHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC----CHHHHHHHHHH
Confidence            3210                    11233344444443322111  1122322  4556665443    25689999999


Q ss_pred             HHHhhccc--hhhhHhhhh---hchHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhccccc-------cchhhhh
Q 009514          212 LADMCSKL--ECCRSRCLS---LQVLKLVVDAL--------AHDSSDVRSAACMCLRSVSRSIKNL-------SAGSFMN  271 (533)
Q Consensus       212 L~~l~~~~--~~~~~~~~~---~~~l~~l~~~L--------~~~~~~v~~~a~~~L~~ls~~~~~~-------~~~~~~~  271 (533)
                      |..+....  +..+..++.   ...+..+++..        .+.+.++...-++.+..+.......       ... -.-
T Consensus       271 L~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~-~~l  349 (1204)
T 3a6p_A          271 LLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETP-SNF  349 (1204)
T ss_dssp             HHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCC-TTH
T ss_pred             HHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccCh-hHH
Confidence            99998743  222222222   12234445543        1224567777777777765321100       000 011


Q ss_pred             cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 009514          272 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVD  303 (533)
Q Consensus       272 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~  303 (533)
                      .++++.++.+..+++..+-..++..-..+...
T Consensus       350 ~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          350 GKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            35677788888888888888877665555543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=91.81  E-value=7.5  Score=36.25  Aligned_cols=157  Identities=15%  Similarity=0.197  Sum_probs=98.2

Q ss_pred             HHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHH
Q 009514          298 SNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQ  377 (533)
Q Consensus       298 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~  377 (533)
                      .|+..+.++...-+++.+|+..+....+.++.++.......|-......+                              
T Consensus       267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks------------------------------  316 (619)
T 3c2g_A          267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA------------------------------  316 (619)
T ss_dssp             HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG------------------------------
T ss_pred             HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH------------------------------
Confidence            34554566667778888889888888888888877777766665533211                              


Q ss_pred             HHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHH
Q 009514          378 ALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI  457 (533)
Q Consensus       378 a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  457 (533)
                             +|...-+          ..++.+...+.-+++++|...+.+.|+|..+......+..+.       .++++.|
T Consensus       317 -------L~~t~L~----------e~LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~-------~nAI~LL  372 (619)
T 3c2g_A          317 -------LAKTPLE----------NILPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIR-------SNAIFLL  372 (619)
T ss_dssp             -------GGTSCCT----------THHHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHH-------TTHHHHH
T ss_pred             -------Hhhcccc----------ccchHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhc-------cCcHHHH
Confidence                   2222111          056667676766688999999999999999877666666665       6788877


Q ss_pred             HHhhcc-------CChhHHHHHHHHHHhhc---------CCCC-------CC--cHHHHHHHHHCCcHHHHHhhhc
Q 009514          458 IKFLQS-------NDSRLRTAAVWAVLNLT---------CSSS-------PG--SSGRLVKLHDAGIVSHVKNMVN  508 (533)
Q Consensus       458 v~~L~~-------~~~~v~~~a~~~L~~l~---------~~~~-------~~--~~~~~~~l~~~g~~~~L~~ll~  508 (533)
                      -..+..       .+..-++-||..++|-.         |-..       -|  ..++...+.|..++..|..-|+
T Consensus       373 h~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS  448 (619)
T 3c2g_A          373 HTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLS  448 (619)
T ss_dssp             HHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHH
T ss_pred             HHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence            776532       23345555666555432         2110       02  2333445555566677776664

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=91.72  E-value=21  Score=40.34  Aligned_cols=218  Identities=15%  Similarity=0.047  Sum_probs=117.8

Q ss_pred             hhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc--CCCCHHHHHHHHHHHHHHhhcc-ccccchhhhh
Q 009514          195 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL--AHDSSDVRSAACMCLRSVSRSI-KNLSAGSFMN  271 (533)
Q Consensus       195 L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L--~~~~~~v~~~a~~~L~~ls~~~-~~~~~~~~~~  271 (533)
                      +.+++.+...|..|-..|..+-...          ++...+...|  .+.++.+|..|+..|.+..... ......  ..
T Consensus        20 ~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e--~k   87 (1204)
T 3a6p_A           20 MMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRL--EK   87 (1204)
T ss_dssp             HHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHH--HH
T ss_pred             HhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHH--HH
Confidence            3343234556777776666653221          1233333333  3557899999999998875320 111110  11


Q ss_pred             cCcHHHHHHhhc-C------CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514          272 ETIVIPLVRLLD-D------TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       272 ~~~i~~Lv~lL~-~------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~  344 (533)
                      ..+-..++.++. .      +++.++...+.++..++....+...    .+.++.+++++.+ ++..+..++.+|..++.
T Consensus        88 ~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E  162 (1204)
T 3a6p_A           88 VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVMFILLRLAE  162 (1204)
T ss_dssp             HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence            122234555543 1      4688899999999888753211111    2567777777765 45667888888888764


Q ss_pred             c------CChHhHHHH---HHhh---cHHHHHhhhCC-------------------CChhHHHHHHHHHHHhhcCCcchH
Q 009514          345 L------AEDKCKEEI---FMEL---TASLLASLICD-------------------PEPSVQEQALALVRNLVDGRINSV  393 (533)
Q Consensus       345 ~------~~~~~~~~i---~~~~---~~~~l~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~  393 (533)
                      .      ....-+..+   +...   .+..+..++.+                   .+..+...++.++.+....-+  .
T Consensus       163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~  240 (1204)
T 3a6p_A          163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--M  240 (1204)
T ss_dssp             HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--H
T ss_pred             HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--H
Confidence            2      111111111   1111   12222333322                   123466677777776655432  3


Q ss_pred             HHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCC
Q 009514          394 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK  434 (533)
Q Consensus       394 ~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~  434 (533)
                      ..+++..+.+++.+...+.   +++++..|+.+|..+....
T Consensus       241 ~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~  278 (1204)
T 3a6p_A          241 SHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRK  278 (1204)
T ss_dssp             HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCC
T ss_pred             HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCC
Confidence            3444432235666665443   5788999999999998744

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=91.62  E-value=6.5  Score=34.84  Aligned_cols=147  Identities=18%  Similarity=0.204  Sum_probs=89.3

Q ss_pred             cCcHHHHHHhhhcC----C-----CCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHH
Q 009514          185 VNGVDKLYNHLQKG----S-----LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR  255 (533)
Q Consensus       185 ~~~l~~L~~~L~~~----~-----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~  255 (533)
                      .+|+..|+++|...    .     .+......++.+|.++..+.......+...+.+..+...|.++++.++..+...|.
T Consensus        42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~  121 (233)
T 2f31_A           42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  121 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            45666666655431    1     12345678899999988654444333444568999999999999999999999998


Q ss_pred             HHhhccc-cc-cch---------hhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchh------HHHHHHhCcH
Q 009514          256 SVSRSIK-NL-SAG---------SFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTR------RSTFIRLGGV  317 (533)
Q Consensus       256 ~ls~~~~-~~-~~~---------~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~------~~~~~~~~~i  317 (533)
                      .++...+ +. ...         ...+..-..++++.++ +.+.+.+.++...+-.+....++.      +..+...|..
T Consensus       122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~  201 (233)
T 2f31_A          122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  201 (233)
T ss_dssp             HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred             HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence            8876533 11 111         0112233456788776 466788777777776666554432      2344455655


Q ss_pred             HHHHHhhcCCCHHH
Q 009514          318 KLLVQLSKSMDSTI  331 (533)
Q Consensus       318 ~~L~~ll~~~~~~~  331 (533)
                      +.+-.+-...++.+
T Consensus       202 ~il~~l~~~~~~~L  215 (233)
T 2f31_A          202 QVLQELREIENEDM  215 (233)
T ss_dssp             HHHHHHHHCCCHHH
T ss_pred             HHHHHHhccCCHHH
Confidence            55444434445443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.18  E-value=14  Score=35.63  Aligned_cols=157  Identities=14%  Similarity=0.144  Sum_probs=93.4

Q ss_pred             cchhhhHhhhhhchHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514          218 KLECCRSRCLSLQVLKLVVDALAH----D-------SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  286 (533)
Q Consensus       218 ~~~~~~~~~~~~~~l~~l~~~L~~----~-------~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  286 (533)
                      .+-.+...+. .+|+..|+.+|..    +       +......+.+||..+.......... +...+++..|...|.+++
T Consensus        36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~v-l~~~~~i~~l~~sL~s~~  113 (386)
T 2bnx_A           36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV  113 (386)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHH-HHSSSHHHHHHHTCCTTS
T ss_pred             CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHH-HcCcHHHHHHHHHhCCCC
Confidence            3446666664 6777777777641    1       3466788888988886542222222 345677888999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCc-hh-HHHHHH----------hCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCCh-H---
Q 009514          287 TAVQVAALGAISNIVVDFT-TR-RSTFIR----------LGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAED-K---  349 (533)
Q Consensus       287 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~~----------~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~-~---  349 (533)
                      +.++..++..|..++..+. .. ...+++          ..-...++..+. +.+.+.+.+++..+..++.+.+. +   
T Consensus       114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~  193 (386)
T 2bnx_A          114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV  193 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            9999999988888776443 22 222222          123344666565 45567777777777777654332 2   


Q ss_pred             -hHHHHHHhhcHHHHHhhhC-CCChhHHHH
Q 009514          350 -CKEEIFMELTASLLASLIC-DPEPSVQEQ  377 (533)
Q Consensus       350 -~~~~i~~~~~~~~l~~lL~-~~~~~v~~~  377 (533)
                       .|..+...| +..++.-++ ..++++..+
T Consensus       194 ~LR~Ef~~~G-L~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          194 HIRSELMRLG-LHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHHHHHHHTT-HHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHCC-hHHHHHHHhccCChhHHHH
Confidence             233344444 444444444 345544433

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=89.34  E-value=13  Score=34.31  Aligned_cols=113  Identities=14%  Similarity=0.126  Sum_probs=73.3

Q ss_pred             HHHhhcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHHh--hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514          320 LVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFME--LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI  396 (533)
Q Consensus       320 L~~ll~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~--~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  396 (533)
                      +...+.+ ..+.-+.-++++++|+..+  +..++.+...  ..++.+...+.+++..++..+..++.|++....+...  
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~~--~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~--  227 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFVG--QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN--  227 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGGS--HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccCC--chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC--
Confidence            3344433 3466788999999999864  3455555442  3455666666778899999999999999843110000  


Q ss_pred             HhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChh
Q 009514          397 FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES  436 (533)
Q Consensus       397 ~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~  436 (533)
                      .+....++..+..++....+++....++.+|+++..++.+
T Consensus       228 ~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~  267 (304)
T 3ebb_A          228 IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSN  267 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChh
Confidence            0111114555556666556788999999999999987654

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=89.25  E-value=8.6  Score=37.07  Aligned_cols=105  Identities=14%  Similarity=0.172  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHHHHHHhcCCchhHHHHHH-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh-HHHHHHhh-----
Q 009514          286 STAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC-KEEIFMEL-----  358 (533)
Q Consensus       286 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~-~~~i~~~~-----  358 (533)
                      +...+..++.||..+.. .......++. .+++..+...+.++++.++..++..|..+|...+++. ...+++..     
T Consensus        71 d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            46778899999998884 4444445544 4678888888988899999999999988887554333 44444331     


Q ss_pred             -----cHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcc
Q 009514          359 -----TASLLASLIC-DPEPSVQEQALALVRNLVDGRIN  391 (533)
Q Consensus       359 -----~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~  391 (533)
                           -...++..+. +.+.+.+..++..+..+..+.++
T Consensus       150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~d  188 (386)
T 2bnx_A          150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  188 (386)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCC
Confidence                 2344666665 56778888888888888877654

>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}

Probab=87.27  E-value=42  Score=37.62  Aligned_cols=260  Identities=14%  Similarity=0.109  Sum_probs=136.4

Q ss_pred             HHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHH---HHHHHH
Q 009514          108 IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDM---QKLAFE  184 (533)
Q Consensus       108 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~  184 (533)
                      ++++.-.+..+|......|-.+..+..        ...+...|.+++.+++.+......+|++|--+.+..   +..+.+
T Consensus       163 ~~vl~vap~~lQ~diI~sLPeIl~ds~--------H~~v~~~L~~lL~~~~~L~~~iLdaLs~L~Ls~~~l~~vr~~vl~  234 (1323)
T 3s4w_B          163 MQLISVAPVNLQHDFITSLPEILGDSQ--------HANVGKELGELLVQNTSLTVPILDVFSSLRLDPNFLSKIRQLVMG  234 (1323)
T ss_dssp             HHHHHHSCTTTHHHHHHTHHHHSCGGG--------HHHHHHHHHHHHHHCSTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHhcchh--------hHHHHHHHHHHHhcCcchHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            333433333445544444444444321        224677788888877778888889999986554432   222222


Q ss_pred             ------cCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc-c---hh-h---hHhh----------hhh----chHHHHH
Q 009514          185 ------VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-L---EC-C---RSRC----------LSL----QVLKLVV  236 (533)
Q Consensus       185 ------~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~---~~-~---~~~~----------~~~----~~l~~l~  236 (533)
                            ...+|.+++.|-....... ...++..|..--.. .   +. .   ...+          .+.    +....++
T Consensus       235 ~L~s~~~e~LP~lIkFLL~s~t~~~-~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lil  313 (1323)
T 3s4w_B          235 KLSSVRLEDFPVIVKFLLHSVTDTT-SLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVF  313 (1323)
T ss_dssp             STTSSCTTHHHHHHHHHHHSCSSTT-HHHHHHHHHHHHHCC----------------------------CHHHHHHHHHH
T ss_pred             HhccCChhhhHHHHHHHHHhCCHhh-HHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHH
Confidence                  2448999997765432222 22233333321100 0   00 0   0000          000    1122244


Q ss_pred             HhcCC---CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 009514          237 DALAH---DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFI  312 (533)
Q Consensus       237 ~~L~~---~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~  312 (533)
                      +.++.   .+..+..++.+.+.+....         .+...+..++=+ +-+.+...+..+-..+.+.+... .....++
T Consensus       314 d~lks~l~~~k~i~eAwlK~I~~~~~~---------~~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G-~it~~ll  383 (1323)
T 3s4w_B          314 DVIKSAIRYEKTISEAWFKAIERIESA---------AEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSD-CIQEQLL  383 (1323)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHGGGS---------TTCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTT-CSCHHHH
T ss_pred             HHHHHHHhcChHHHHHHHHHHhCCCcc---------cccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-CchHHHH
Confidence            44443   2667777888888776443         122334443322 23445566777778887766532 1111111


Q ss_pred             ----------HhCcHHHHHH----hhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHH
Q 009514          313 ----------RLGGVKLLVQ----LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA  378 (533)
Q Consensus       313 ----------~~~~i~~L~~----ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a  378 (533)
                                -....+.++.    ++++.++.++..+...-..+...-+..+++.++..     |+..+.+++..-...|
T Consensus       384 ~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~-----Lv~hi~sg~~~eVd~A  458 (1323)
T 3s4w_B          384 DSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGA-----LVTHVCSGTEAEVDTA  458 (1323)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHH-----HHHHHHHCCHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHH-----HHhhhcCCCcHHHHHH
Confidence                      1244455543    46778899999888877777665555567666653     3343334444445558


Q ss_pred             HHHHHHhhcCCcc
Q 009514          379 LALVRNLVDGRIN  391 (533)
Q Consensus       379 ~~~L~~l~~~~~~  391 (533)
                      +.+|..++..+++
T Consensus       459 LdvL~~L~~~~~~  471 (1323)
T 3s4w_B          459 LDVLLELIVLNAS  471 (1323)
T ss_dssp             HHHHHHHHHHCHH
T ss_pred             HHHHHHHHhcCHH
Confidence            8888888876554

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=85.99  E-value=25  Score=33.66  Aligned_cols=160  Identities=16%  Similarity=0.167  Sum_probs=101.3

Q ss_pred             hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514          229 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  308 (533)
Q Consensus       229 ~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  308 (533)
                      .++++.++++-.+.+.++|...+..|...+.....      .-...++.|..+|+++++.+...+..+.+++=   +...
T Consensus        62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e------l~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f  132 (386)
T 3o2t_A           62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE------LLLKLIANLNMLLRDENVNVVKKAILTMTQLY---KVAL  132 (386)
T ss_dssp             GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHH
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHH
Confidence            46789999998999999999999999887653211      12456788889999999999988887776642   1111


Q ss_pred             HHHHHh---------------CcHHHHHHhhcCCCHHHHHHHHHHHHHhhc--c---CChH-------------------
Q 009514          309 STFIRL---------------GGVKLLVQLSKSMDSTIRLNALRALRNLIF--L---AEDK-------------------  349 (533)
Q Consensus       309 ~~~~~~---------------~~i~~L~~ll~~~~~~~~~~al~aL~~l~~--~---~~~~-------------------  349 (533)
                      +.+...               ..-..++.+..+.+..+|..++..+..+..  .   .+++                   
T Consensus       133 ~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp  212 (386)
T 3o2t_A          133 QWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHP  212 (386)
T ss_dssp             HHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCS
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCC
Confidence            122211               122345566777889999999988887541  1   0100                   


Q ss_pred             -h-HHHHHH--hhcHHHHHhhhCCC--ChhHHHHHHHHHHHhhcCCcchHHHHH
Q 009514          350 -C-KEEIFM--ELTASLLASLICDP--EPSVQEQALALVRNLVDGRINSVEYIF  397 (533)
Q Consensus       350 -~-~~~i~~--~~~~~~l~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~  397 (533)
                       . ...+.+  .+.++.|++++.++  +.-....++..|..++...|.....++
T Consensus       213 ~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl  266 (386)
T 3o2t_A          213 YIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVI  266 (386)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence             0 011221  23467777777653  344555677777787777665444433

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=84.47  E-value=22  Score=31.84  Aligned_cols=108  Identities=16%  Similarity=0.171  Sum_probs=73.7

Q ss_pred             chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHH--------h
Q 009514          230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI--------V  301 (533)
Q Consensus       230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl--------~  301 (533)
                      ++++.++++-.+.+.++|...+..+...+....      ......++.|..+++++++.+...+..+..++        +
T Consensus        53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~------~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~  126 (257)
T 3gs3_A           53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV------ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC  126 (257)
T ss_dssp             HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567777777778889999999999988875422      23456788899999999999998888776554        3


Q ss_pred             cCCch---hHHHHHH-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514          302 VDFTT---RRSTFIR-LGGVKLLVQLSKSMDSTIRLNALRALRNLI  343 (533)
Q Consensus       302 ~~~~~---~~~~~~~-~~~i~~L~~ll~~~~~~~~~~al~aL~~l~  343 (533)
                      .....   ..+..-. ...=..++.+..+.+..+|..++..+..+.
T Consensus       127 ~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          127 SLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            22210   0101000 122234556677888999999998888754

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=83.11  E-value=3.8  Score=33.44  Aligned_cols=71  Identities=10%  Similarity=0.109  Sum_probs=53.6

Q ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc------CChhHHHHHHHHH
Q 009514          403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS------NDSRLRTAAVWAV  476 (533)
Q Consensus       403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~------~~~~v~~~a~~~L  476 (533)
                      ++..+.+.|.+ +++.++..|+.+|-.+...+......-+.      ...++..|++++..      .+..|+..+...|
T Consensus        49 a~ral~krl~~-~n~~v~l~AL~LLe~cvkNCG~~fh~eia------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li  121 (149)
T 3g2s_A           49 ATRLLAHKIQS-PQEWEAIQALTVLETCMKSCGKRFHDEVG------KFRFLNELIKVVSPKYLGSRTSEKVKNKILELL  121 (149)
T ss_dssp             HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCCHHHHHHHT------SHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHh------hHHHHHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence            67778888886 89999999999998887755444443333      26788889998863      5678999998888


Q ss_pred             Hhhc
Q 009514          477 LNLT  480 (533)
Q Consensus       477 ~~l~  480 (533)
                      ...+
T Consensus       122 ~~W~  125 (149)
T 3g2s_A          122 YSWT  125 (149)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	533
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-12
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-05
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-06
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-06
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	8e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-08
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	8e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.004
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	7e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	9e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	0.004
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	9e-05
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.002

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (161), Expect = 2e-12
 Identities = 60/353 (16%), Positives = 126/353 (35%), Gaps = 14/353 (3%)

Query: 171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ 230
           L  E      +  +   V +L   +++      + E    AL ++ S         +   
Sbjct: 104 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLE-AAWALTNIASGTSAQTKVVVDAD 162

Query: 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ 290
            + L +  L   S +V+  A   L +V+    +      +    + P++ L +    ++ 
Sbjct: 163 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD-YVLQCNAMEPILGLFNSNKPSLI 221

Query: 291 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 350
             A   +SN+      +    +    +  L +L  SMD+   ++A  A+  L    ++  
Sbjct: 222 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 281

Query: 351 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQ 410
           +  I + +    L  L+      VQ  AL  V N+V G     + +     +      R 
Sbjct: 282 QAVIDVRIP-KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLP---ALRL 337

Query: 411 LRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRT 470
           L  + K  I+ +  + + N+  G     +AV+D             ++K L+  + + + 
Sbjct: 338 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDA-------NLIPPLVKLLEVAEYKTKK 390

Query: 471 AAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 523
            A WA+ N   S        +  L   G +  + +++      +      ALE
Sbjct: 391 EACWAISNA-SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 442

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 26/199 (13%), Positives = 61/199 (30%), Gaps = 15/199 (7%)

Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
             +      I    D+Q       GV      L   S      +     ++++ +     
Sbjct: 306 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQ 364

Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG--SFMNETIVIPLVR 280
               +   ++  +V  L       +  AC  + + S             +++  + PL  
Sbjct: 365 IQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD 424

Query: 281 LLDDTSTAVQVAALGAISNIV-----------VDFTTRRSTFIRLGGVKLLVQLSKSMDS 329
           LL+     +    L A+ NI+           ++         + GG++ +    ++ + 
Sbjct: 425 LLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEND 484

Query: 330 TIRLNALRALRNLIFLAED 348
            I   A + +    F  E+
Sbjct: 485 KIYEKAYKIIET-YFGEEE 502

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 15/200 (7%)

Query: 317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQ 375
           +  + Q   S D   +L+A    R ++        + +        L   +  +    +Q
Sbjct: 78  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 376 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 435
            +A   + N+  G  ++   +  +   +      QL      E++ Q ++ LGNVA    
Sbjct: 138 LEAAWALTNIASG-TSAQTKVVVDADAVPLF--IQLLYTGSVEVKEQAIWALGNVAGDST 194

Query: 436 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH 495
            +++ V+          A   I+    SN   L   A W + NL     P     +V   
Sbjct: 195 DYRDYVLQC-------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV--- 244

Query: 496 DAGIVSHVKNMVNDPCLDVK 515
            +  +  +  ++     +  
Sbjct: 245 -SQALPTLAKLIYSMDTETL 263

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 7e-11
 Identities = 33/180 (18%), Positives = 56/180 (31%), Gaps = 13/180 (7%)

Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 336
             V+ L       Q      I +      + +    +LGG+  LV L +S +  ++  A 
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 337 RALRNLIFLAEDKCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLV--------- 386
            ALRNL+F      K E   +       SL+       +Q+Q   L+ NL          
Sbjct: 66  GALRNLVF-RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 387 --DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ 444
             D      + +        D      R     E+       L N+++     +      
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 44/343 (12%), Positives = 101/343 (29%), Gaps = 16/343 (4%)

Query: 7   MAPKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSL 66
           ++   +  +E   + L  L +      SG      + S +    +      G L+ L+S 
Sbjct: 114 LSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173

Query: 67  LGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCL 126
             G    R+ S    + +      V +      +     C++  +  R           L
Sbjct: 174 DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233

Query: 127 IVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVN 186
                 +       G  +   + ++    D     +E +   S  +   + ++       
Sbjct: 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTY----- 288

Query: 187 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV 246
            ++ +    +  +L         L  +         +   L  + L  +   L   +SDV
Sbjct: 289 -LNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV 347

Query: 247 RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD------TSTAVQVAALGAISNI 300
             +    L ++SR          M   +   + RLL         S  +  +A   + N+
Sbjct: 348 VRSGASLLSNMSRHPLLHRV---MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL 404

Query: 301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDS-TIRLNALRALRNL 342
           +         +     +  ++ L +S  S      A   L ++
Sbjct: 405 MASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 54/415 (13%), Positives = 118/415 (28%), Gaps = 34/415 (8%)

Query: 22  LLSLLNNESENVSGLGASIISHSCKTSLEQK-LLFDAGVLKRLTSLLGGS--LIQRDA-- 76
            +  L+++ E    +GA  I H+C      K  ++  G + +L  LL      +Q+ A  
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66

Query: 77  SLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY 136
           +L ++      N     +  G     +L       + +   T LL +L            
Sbjct: 67  ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126

Query: 137 LQDVGIKTKLINNLLELLDDPG---------RVGDEASFAFSSLIAEKEDMQKLAFEVNG 187
                +  ++I       D             V   A+    +L +     Q +      
Sbjct: 127 DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186

Query: 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR-----------SRCLSLQVLKLVV 236
           +D L  ++Q      R  +  +     +   L                        +   
Sbjct: 187 IDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS 246

Query: 237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQ------ 290
                + SD                    +G   +   +   + L+  +           
Sbjct: 247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAG 306

Query: 291 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 350
                  S  ++     +   ++  G+  + +L +S +S +  +    L N+        
Sbjct: 307 ALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR 366

Query: 351 --KEEIFMELTASLLAS-LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 402
               ++F E+T  L +          +   A   VRNL+  +    +  F+   +
Sbjct: 367 VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 31/175 (17%), Positives = 65/175 (37%), Gaps = 10/175 (5%)

Query: 317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQE 376
           +   VQ   S D   +      +++  F  ++  K++++       L  L+  P  +VQ+
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 377 QALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK-- 434
            A   +RNLV     +      ++GI        LR    AEI+ Q   +L N+++    
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGI--REAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 435 -----ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS 484
                      + D++++              +  D  +   A   + NL+ + +
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA 175

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 44/333 (13%), Positives = 89/333 (26%), Gaps = 25/333 (7%)

Query: 211 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFM 270
            +   C + E  + +   L  +  +VD L   + +V+ AA   LR++          +  
Sbjct: 25  YIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84

Query: 271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL------- 323
              I   +  L    +  +Q    G + N+      +    I      L  ++       
Sbjct: 85  QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGW 143

Query: 324 --------SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 375
                    + +D  +  NA   LRNL      +     +  L  SL+A +      +  
Sbjct: 144 CDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYV--QNCVAAS 201

Query: 376 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 435
                 V N +    N    + AE       +    R A   +          +      
Sbjct: 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNN 261

Query: 436 -----SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP--GSS 488
                  +E           + A    +  +  +       A    L    +S     S 
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321

Query: 489 GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTA 521
              +       +  +  ++     DV     + 
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASL 354

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 8e-11
 Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 2/220 (0%)

Query: 206 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 265
           EG L  LAD+C  ++     C    +  LV   L   ++ +R  A   + + S+++  + 
Sbjct: 35  EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 94

Query: 266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK 325
                   +   L  L  D    V+V AL AIS +V +       F+RL G  +L++  +
Sbjct: 95  EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 154

Query: 326 SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 385
                +++ +   L+NL  +   + K  +        L +L+        E  L  + +L
Sbjct: 155 QQVQKLKVKSAFLLQNL-LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 213

Query: 386 VDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY 425
           V      V     E  + L+ + R      +   E Q   
Sbjct: 214 VTDFPQGVR-ECREPELGLEELLRHRCQLLQQHEEYQEEL 252

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 34/222 (15%), Positives = 56/222 (25%), Gaps = 26/222 (11%)

Query: 164 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR 223
           A    +S   E E  Q       G+  +   L              + L    +      
Sbjct: 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP--SHWPLIKATVGLIRNLALCPANH 390

Query: 224 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD 283
           +       +  +V  L     D +    M                            +  
Sbjct: 391 APLREQGAIPRLVQLLVRAHQDTQRRTSMGG---------------------TQQQFVEG 429

Query: 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343
                +     GA+  +  D    R     L  + L VQL  S    I+  A   L  L 
Sbjct: 430 VRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488

Query: 344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 385
              + +  E I  E   + L  L+      V   A A++  +
Sbjct: 489 --QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 4e-08
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 3/127 (2%)

Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQ-LSKSMDSTIRLNA 335
            L +LL+D    V   A   +  +     +R +       V  +V+ +  + D       
Sbjct: 21  ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 80

Query: 336 LRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEY 395
              L NL      +    IF       L  ++  P  SV   A+  + NL+  +  +   
Sbjct: 81  AGTLHNLSH--HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 396 IFAEDGI 402
           +    G+
Sbjct: 139 VRLAGGL 145

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 8e-08
 Identities = 26/172 (15%), Positives = 61/172 (35%), Gaps = 6/172 (3%)

Query: 211 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFM 270
           A+ ++ +  +      L+ + +  +   L  +   V + A + +  +S+   +  A    
Sbjct: 1   AVVNLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA-IMR 56

Query: 271 NETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS 329
           +  +V  +VR + +T          G + N+        +   + GG+  LV++  S   
Sbjct: 57  SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA-IFKSGGIPALVKMLGSPVD 115

Query: 330 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALAL 381
           ++   A+  L NL+   E              ++A L       +      L
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 62/524 (11%), Positives = 160/524 (30%), Gaps = 39/524 (7%)

Query: 22  LLSLLNNESENVSGLGASIISHSCKTSLE-QKLLFDAGVLKRLTSLLGGS---LIQRDAS 77
           L  LLN+E + V    A ++    K       ++    ++  +   +  +      R  +
Sbjct: 22  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81

Query: 78  --LESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 135
             L +++   +    +            +  +++++          A   L         
Sbjct: 82  GTLHNLSHHREGLLAIFKSGG-------IPALVKMLGSPVDSVLFYAITTL-HNLLLHQE 133

Query: 136 YLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL 195
             +        +  ++ LL+         +     ++A      KL    +G  +   ++
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193

Query: 196 QKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR 255
            +   + +        +  + S     +   +    ++ +   L   S  +       LR
Sbjct: 194 MRTYTYEKLLWT-TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252

Query: 256 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 315
           ++S +           E ++  LV+LL      V   A G +SN+  +    +    ++G
Sbjct: 253 NLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308

Query: 316 GVKLLVQL--SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLA--SLICDPE 371
           G++ LV+          I   A+ ALR+L    ++    +  + L   L     L+  P 
Sbjct: 309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368

Query: 372 PSVQEQALALVRNLVDGRINSVEYIFAEDGIIL---------DAVGRQLRIASKAEIEIQ 422
                +A   +   +     +   +  +  I               R+  +    +  ++
Sbjct: 369 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 428

Query: 423 G--MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
           G  M  +    TG        +   ++          ++ L S    ++  A   +  L 
Sbjct: 429 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL- 487

Query: 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ 524
            +    ++     +   G  + +  +++     V       L +
Sbjct: 488 -AQDKEAA---EAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 11/196 (5%)

Query: 212 LADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN 271
           +AD+ S              ++ +V  +  ++ + +  A    R +    K     + + 
Sbjct: 1   MADIGSNQG------TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIR 54

Query: 272 ETIVIPLVRLLDDTSTA-VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST 330
             ++   V  L  T  + +Q  +  A++NI    + +    +  G +   + L  S  + 
Sbjct: 55  AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH 114

Query: 331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP----SVQEQALALVRNLV 386
           I   A+ AL N+           I       LLA L                   + NL 
Sbjct: 115 ISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 174

Query: 387 DGRINSVEYIFAEDGI 402
             +  +      E  +
Sbjct: 175 RNKNPAPPLDAVEQIL 190

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 19/136 (13%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 212 LADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN 271
           ++++ +  +    + ++  ++  +V  L+      +  A   + + +           ++
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355

Query: 272 ETIVIPLVRLLDDTSTAVQVAALGAISNI------VVDFTTRRSTFIRLGGVKLLVQLSK 325
             I+ PL+ LL    T +    L AISNI      + +           GG+  +  L +
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415

Query: 326 SMDSTIRLNALRALRN 341
             + ++   +L  +  
Sbjct: 416 HENESVYKASLNLIEK 431

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 58/391 (14%), Positives = 127/391 (32%), Gaps = 21/391 (5%)

Query: 141 GIKTKLINNLLELL--DDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG 198
           G     + ++++ +  ++          A   L  EK+           + K  + L K 
Sbjct: 9   GTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT 68

Query: 199 SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS 258
              P +FE    AL ++ S         +    +   +  LA   + +   A   L +++
Sbjct: 69  DCSPIQFE-SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA 127

Query: 259 RSIKNLSAGSFMNETIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRSTFIRL 314
                       +  I   L  L        +          +SN+  +           
Sbjct: 128 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE 187

Query: 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSV 374
             +  LV+L    D  +  ++  A+  L     ++ +  +   +   L+  L     P V
Sbjct: 188 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV 247

Query: 375 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 434
                A+   +      + + I A       AV   L    K  I+ +  + + N+  G+
Sbjct: 248 TPALRAIGNIVTGTDEQTQKVIDAGA----LAVFPSLLTNPKTNIQKEATWTMSNITAGR 303

Query: 435 ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKL 494
           +   + V++  L+         ++  L   D + +  A WA+ N T   +      +V L
Sbjct: 304 QDQIQQVVNHGLV-------PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ---IVYL 353

Query: 495 HDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 525
              GI+  + N+++     +   +  A+   
Sbjct: 354 VHCGIIEPLMNLLSAKDTKIIQVILDAISNI 384

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 8e-07
 Identities = 26/174 (14%), Positives = 56/174 (32%), Gaps = 12/174 (6%)

Query: 229 LQVLKLVVDALAHDSSDVRSAACMCLR-SVSRSIKNLSAGSFMNETIVIPLVRLLDDTST 287
              L  V+  L  +    RS + + L+ +V    +N   G    + I    +  + D+S 
Sbjct: 45  NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT--DFIKSECLNNIGDSSP 102

Query: 288 AVQVAALGAISNIV-VDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA 346
            ++      I+ I            +       L  L  S D      A  AL+ +   +
Sbjct: 103 LIRATVGILITTIASKGELQNWPDLL-----PKLCSLLDSEDYNTCEGAFGALQKICEDS 157

Query: 347 EDKCKEEIFMELTASLLASLI---CDPEPSVQEQALALVRNLVDGRINSVEYIF 397
            +    ++       ++   +       P ++  A+A V   +  R  ++    
Sbjct: 158 AEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI 211

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 29/220 (13%), Positives = 73/220 (33%), Gaps = 5/220 (2%)

Query: 146 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF 205
            I    +  D+       + +      A   D+    +    +  +   L++   H    
Sbjct: 351 GIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV 410

Query: 206 EGILLALADMCSKLECCRSRCLSL--QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 263
                 L  + +  E C    +    +++  ++  L+   + VRS  C  L   +  + +
Sbjct: 411 VKESGILV-LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS 469

Query: 264 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 323
               +++   +   L++ + D++  VQ AA  A + +  +  T    ++    +  LV  
Sbjct: 470 QPPDTYLKPLM-TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA-YILDTLVFA 527

Query: 324 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 363
                    L    A+  L         +  ++++    L
Sbjct: 528 FSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 567

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 21/171 (12%), Positives = 58/171 (33%), Gaps = 11/171 (6%)

Query: 215 MCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI 274
           M              ++  L +  L      +R AA   L+ +           + + TI
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF----GKEWAHATI 481

Query: 275 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 334
           +  ++ +  D +   ++  L  I+ +                +  +++++    + +R N
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD---ITTKHMLPTVLRMAGDPVANVRFN 538

Query: 335 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 385
             ++L+ +  + ++   +         +L  L  D +  V+  A   +  L
Sbjct: 539 VAKSLQKIGPILDNSTLQSEVK----PILEKLTQDQDVDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 210 LALADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 268
           +      + L E C     +  +L  V+       ++VR      L+ +   + N    S
Sbjct: 498 MTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN----S 553

Query: 269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNI 300
            +   +   L +L  D    V+  A  A++ +
Sbjct: 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 228 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST 287
           SL  + +++D L ++   +R  +   L +++ ++     G     + ++P +        
Sbjct: 8   SLYPIAVLIDELRNEDVQLRLNSIKKLSTIALAL-----GVERTRSELLPFLTDTIYDED 62

Query: 288 AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE 347
            V +A    +                L  +  L  L+   ++ +R  A+ +LR +     
Sbjct: 63  EVLLALAEQLGTF-TTLVGGPEYVHCL--LPPLESLATVEETVVRDKAVESLRAISHEHS 119

Query: 348 DKCKEEIFMELTASLLAS 365
               E  F+ L   L   
Sbjct: 120 PSDLEAHFVPLVKRLAGG 137

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 27/173 (15%), Positives = 61/173 (35%), Gaps = 11/173 (6%)

Query: 215 MCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI 274
           +    E    R LS  +L  +V+        VR A    +  ++  +       F +E +
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL----GVEFFDEKL 442

Query: 275 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 334
               +  L D   A++ AA   +  +V  F      +     +  ++ +S   +   R+ 
Sbjct: 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKF---GKEWAHATIIPKVLAMSGDPNYLHRMT 499

Query: 335 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 387
            L  +  L     + C ++I  +     +  +  DP  +V+      ++ +  
Sbjct: 500 TLFCINVLS----EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 37/309 (11%), Positives = 108/309 (34%), Gaps = 29/309 (9%)

Query: 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 289
           +V+K+++  L   + +V++ A  CL  +   +K         ETIV  L   +      +
Sbjct: 45  KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-----ETIVDTLCTNMLSDKEQL 99

Query: 290 QVAALGAISNIVVDFTTRRSTFIRLGGV------KLLVQLSKSMDSTIRLNALRALRNLI 343
           +  +   +  ++ +     S       V      +L   ++K  D +++L AL  + +++
Sbjct: 100 RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 159

Query: 344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 403
                      F     + L   +  P  +V+++ +  + +LV    +    +F +   +
Sbjct: 160 SRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM---SCGNIVFVD---L 211

Query: 404 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 463
           ++ +  +L            +  +  ++          +++++          ++KF   
Sbjct: 212 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII--------PLVVKFCNV 263

Query: 464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI--VSHVKNMVNDPCLDVKLRVKTA 521
           +D  LR   + A  +            +  + +  +  +++  N   D   + +  +   
Sbjct: 264 DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDAD 323

Query: 522 LEQFNSFDD 530
               +    
Sbjct: 324 GGDDDDQGS 332

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 42/296 (14%), Positives = 103/296 (34%), Gaps = 29/296 (9%)

Query: 235 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAAL 294
           +++ +     D R  A   L +  +   ++         +V  +++LL+D +  VQ  A+
Sbjct: 8   LLEKMTSSDKDFRFMATNDLMTELQK-DSIKLDDDSERKVVKMILKLLEDKNGEVQNLAV 66

Query: 295 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI 354
             +  +V      +   I    V  L     S    +R  +   L+ +I           
Sbjct: 67  KCLGPLVSKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 122

Query: 355 FME-----LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR 409
                   +T  L +++    + SVQ +AL ++ +++  +   +         IL  +  
Sbjct: 123 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS---ILTCLLP 179

Query: 410 QLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 469
           QL  + +  +  + +  LG++     S    V   L+       +  + +  +++     
Sbjct: 180 QLT-SPRLAVRKRTIIALGHLV---MSCGNIVFVDLI-------EHLLSELSKNDSMSTT 228

Query: 470 TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 525
              +  +  ++       +G  +  +   I+  V    N    +++     A E F
Sbjct: 229 RTYIQCIAAIS-----RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESF 279

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 21/212 (9%)

Query: 90   EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN 149
            EV             S I+E         +  AS  L  I   +           + +  
Sbjct: 841  EVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNL---------PEYLPF 891

Query: 150  LLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGIL 209
            +L+ +    +       +   +I+    +    +    V+ ++  L K        EG  
Sbjct: 892  VLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY----VENIWALLLKHCECAE--EGTR 945

Query: 210  LALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF 269
              +A+   KL    +      +L  +   L   SS  RS+    ++              
Sbjct: 946  NVVAECLGKL----TLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL 1001

Query: 270  MNETIVIPLVRLLDDTSTAVQVAALGAISNIV 301
              +  +   ++ L+D    V+  AL   ++  
Sbjct: 1002 --KNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 211 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFM 270
           A       L  C    +   VL  + + + +     R AA M    +    +       +
Sbjct: 346 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 405

Query: 271 NETIVIPLVRLLDDTSTAVQVAALGAISNI 300
            +  +  L+ L+ D S  V+  A   +  I
Sbjct: 406 IQ-AMPTLIELMKDPSVVVRDTAAWTVGRI 434

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 146 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK--GSLHPR 203
           L+  L + L       D+  +           +     E + V  +   +++   +   R
Sbjct: 321 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 380

Query: 204 RFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 263
             +  ++A   +    E  + + L +Q +  +++ +   S  VR  A   +  +   +  
Sbjct: 381 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 440

Query: 264 LSAGSFMNETIVIPLVRLL 282
            +    +N+  + PL++ L
Sbjct: 441 AA----INDVYLAPLLQCL 455

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 22/163 (13%), Positives = 47/163 (28%), Gaps = 17/163 (10%)

Query: 234 LVVDALAHDSSDVRSAACM-----CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 288
            +   +      VR A         L ++          +  +   +  L ++  D    
Sbjct: 70  ALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYL 129

Query: 289 VQVAALGAISNIVVDFTTR------RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN- 341
           V+   +  I    +    R      R    +    + L  +++  +  +R      LR  
Sbjct: 130 VRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGD 189

Query: 342 -LIFLAEDK---CKEEIFMELTASLLASLICDPEPSVQEQALA 380
            L+ L  D     +       +   L  L  +P+P V+     
Sbjct: 190 DLLELLHDPDWTVRLAAVEHASLEALRELD-EPDPEVRLAIAG 231

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	533
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.88
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.87
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.82
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.71
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.71
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.7
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.53
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.5
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.4
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.39
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.37
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.35
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.32
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.23
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.18
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.15
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.59
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.46
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.45
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.41
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.73
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.61
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.5
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.31
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.43
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.11
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	93.86
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.8
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	89.83
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	85.96
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	81.84

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-39  Score=331.33  Aligned_cols=486  Identities=13%  Similarity=0.127  Sum_probs=405.9

Q ss_pred             ccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhc-CchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChh
Q 009514           14 LQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLGG--SLIQRDASLESIATIFKNNPE   90 (533)
Q Consensus        14 ~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~-g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~   90 (533)
                      +..++||.|+++|++++..+++.|+.++.+++..+..+..+... |+++.++.+|.+  ++.+++.|+.+|.+++.+ ++
T Consensus        14 ~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~   92 (529)
T d1jdha_          14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-RE   92 (529)
T ss_dssp             ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-ch
Confidence            44688999999999999999999999999999888877777664 679999999974  578999999999999864 45


Q ss_pred             hhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHH
Q 009514           91 VVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFS  169 (533)
Q Consensus        91 ~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~  169 (533)
                      ....+.+   .++++.++.+++++++.++..|+.+|.+++...+. .+..+...|++|.|++++++ +..++..++++|.
T Consensus        93 ~~~~i~~---~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~  168 (529)
T d1jdha_          93 GLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ  168 (529)
T ss_dssp             HHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred             hHHHHHH---CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccch-hhhHHHhcCCchHHHHHHHccChHHHHHHHHHHH
Confidence            5455654   57899999999999999999999999999987754 45667789999999999985 5678999999999


Q ss_pred             hhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHH
Q 009514          170 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSA  249 (533)
Q Consensus       170 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~  249 (533)
                      +++..+++.+..+.+.|+++.++.++...+ +..+++.+.+++.+++. +++.+..+.+.|+++.++.++.+++..++..
T Consensus       169 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~  246 (529)
T d1jdha_         169 ILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQN  246 (529)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHH
T ss_pred             HHhhhhhHHHHHHHhcccchHHHHHHHhhh-hHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhhhh
Confidence            999888888888889999999999987763 56788999999999986 4577888999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc--CC
Q 009514          250 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK--SM  327 (533)
Q Consensus       250 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~--~~  327 (533)
                      +++++.+++.....   . ....|+++.|++++++++++++..|+++|+|++.+....+..+.+.++++.++.++.  ++
T Consensus       247 a~~~l~~ls~~~~~---~-~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~  322 (529)
T d1jdha_         247 CLWTLRNLSDAATK---Q-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD  322 (529)
T ss_dssp             HHHHHHHHHTTCTT---C-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred             hhhHHHhccccccc---h-hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhc
Confidence            99999999865222   1 345688999999999999999999999999999888888888899999999998774  46


Q ss_pred             CHHHHHHHHHHHHHhhccCCh--HhHHHHHHhhcHHHHHhhhCCC-ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchH
Q 009514          328 DSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGRINSVEYIFAEDGIIL  404 (533)
Q Consensus       328 ~~~~~~~al~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~  404 (533)
                      ++.++..++++|.+++.....  ..+..+...++++.+++++.++ +..++..+++++.+++... +....+.+.+  .+
T Consensus       323 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~-~~~~~l~~~g--~i  399 (529)
T d1jdha_         323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQG--AI  399 (529)
T ss_dssp             CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG-GGHHHHHHTT--HH
T ss_pred             chhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhh-hhhhhhhhcc--cH
Confidence            678999999999999865432  2455667788999999999865 4678889999999998764 4556667666  67


Q ss_pred             HHHHHHhccC---------------------CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc
Q 009514          405 DAVGRQLRIA---------------------SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS  463 (533)
Q Consensus       405 ~~L~~~L~~~---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~  463 (533)
                      +.+.++|.+.                     ...++...++.++.+++.. +..+..+.+       .+.++.|+.+|.+
T Consensus       400 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~-~~~r~~~~~-------~~~i~~Lv~lL~~  471 (529)
T d1jdha_         400 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRG-------LNTIPLFVQLLYS  471 (529)
T ss_dssp             HHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS-HHHHHHHHH-------TTCHHHHHHGGGC
T ss_pred             HHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccC-HHHHHHHHH-------CCCHHHHHHHhCC
Confidence            7777777531                     1235667788888888753 444444433       7889999999999


Q ss_pred             CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       464 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                      +++.++..|+++|.+|+.     ..+..+.+.+.|+++.|+++++++++.+++.|..||.+|+
T Consensus       472 ~~~~v~~~a~~aL~~L~~-----~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         472 PIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             SCHHHHHHHHHHHHHHTT-----SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhc-----ChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999995     3456678999999999999999999999999999999885

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-34  Score=289.50  Aligned_cols=412  Identities=15%  Similarity=0.184  Sum_probs=350.4

Q ss_pred             cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHH
Q 009514          101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDM  178 (533)
Q Consensus       101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~  178 (533)
                      ...+..+++.++++++..|..|+.+++++.....++..+.+++.|++|.|++++++  ++.++..++++|.+++.++++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            45799999999999999999999999998765544445678889999999999974  3568999999999999998888


Q ss_pred             HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCH-----HHHHHHHHH
Q 009514          179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS-----DVRSAACMC  253 (533)
Q Consensus       179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~-----~v~~~a~~~  253 (533)
                      .+.+.+.|+++.++++|.++  ++.+++.++++|++++.+++..+..+.+.|+++.++.++...+.     .....++++
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~--~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  169 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT  169 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccC--CHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHH
Confidence            88899999999999988765  47899999999999999888888889999999999999986543     345667788


Q ss_pred             HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514          254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL  333 (533)
Q Consensus       254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  333 (533)
                      +.+++......... ....++++.|+.++.+++++++..++++|++++..+......+.+.|+++.++++++++++.++.
T Consensus       170 l~~~~~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~  248 (434)
T d1q1sc_         170 LSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT  248 (434)
T ss_dssp             HHHHTCCCTTCCCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred             HHHHhhcccccchh-hhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhh
Confidence            88887764333322 34667899999999999999999999999999987777777788899999999999999999999


Q ss_pred             HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514          334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI  413 (533)
Q Consensus       334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~  413 (533)
                      .+++++.+++.+ ++..+..+.+.++++.+.+++++++++++..++++|.+++...++....+.+.+  +++.+...+.+
T Consensus       249 ~al~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~li~~l~~  325 (434)
T d1q1sc_         249 PALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG--LVPFLVGVLSK  325 (434)
T ss_dssp             HHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--CHHHHHHHHHS
T ss_pred             chhhhhhhHHhh-hhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhh--hHHHHHHHHhc
Confidence            999999999874 456778889999999999999999999999999999999988777777777777  78999898887


Q ss_pred             CCchhHHHHHHHHHHHhccC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCC--CCCCcHHH
Q 009514          414 ASKAEIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS--SSPGSSGR  490 (533)
Q Consensus       414 ~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~  490 (533)
                       ++++++..++|+++|++.. +.+....+.+       .|+++.|++++.+++++++..++++|.++...  ..+.....
T Consensus       326 -~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~-------~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~  397 (434)
T d1q1sc_         326 -ADFKTQKEAAWAITNYTSGGTVEQIVYLVH-------CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL  397 (434)
T ss_dssp             -SCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-------TTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             -cChHHHHHHHHHHHHHHhcCCHHHHHHHHH-------CCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence             7899999999999999874 3444555554       78999999999999999999999999988631  12234445


Q ss_pred             HHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          491 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       491 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                      ...+.+.|+++.|..|.+++++++++.|...|.++.
T Consensus       398 ~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         398 SIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            667889999999999999899999999999888763

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-33  Score=287.74  Aligned_cols=416  Identities=15%  Similarity=0.186  Sum_probs=355.9

Q ss_pred             cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHH
Q 009514          101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDM  178 (533)
Q Consensus       101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~  178 (533)
                      ...++.++..+.+++...+..|+..++.+.........+.+++.|++|.|+++++.  +..++..|+++|++++.+++..
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            45788899999999999999999999987754444445678899999999999984  3568999999999999999888


Q ss_pred             HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009514          179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS  258 (533)
Q Consensus       179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls  258 (533)
                      ...+.+.|+++.++.+|.+++  .++++.++++|++++.+++..+..+.+.|+++.++.++.+.++.++..++++|.+++
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~--~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~  232 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGS--VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC  232 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCC--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCChHHHHHHhcCCC--hhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHh
Confidence            888899999999999998764  789999999999999988899999999999999999999999999999999999999


Q ss_pred             hccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514          259 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA  338 (533)
Q Consensus       259 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a  338 (533)
                      +........ ....+++|.|+.++.+++++++..++|+|.+++.........+.+.|+++.++.++.+++..++..++.+
T Consensus       233 ~~~~~~~~~-~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~  311 (503)
T d1wa5b_         233 RGKKPQPDW-SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA  311 (503)
T ss_dssp             CCSSSCCCH-HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             cCCccchHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHH
Confidence            874443333 3567899999999999999999999999999998777777889999999999999999999999999999


Q ss_pred             HHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchh
Q 009514          339 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE  418 (533)
Q Consensus       339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~  418 (533)
                      +++++.+. +.....+.+.++++.+..+++++++.++..++|+|+|++.++++....+++.+  +++.+...+.+ ++.+
T Consensus       312 l~nl~~~~-~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~--~l~~li~~l~~-~~~~  387 (503)
T d1wa5b_         312 VGNIVTGN-DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN--LIPPLVKLLEV-AEYK  387 (503)
T ss_dssp             HHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--CHHHHHHHHHH-SCHH
T ss_pred             HHHHHHHH-HHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHcc--ccchhHHhccc-CChh
Confidence            99998743 45666788889999999999999999999999999999998888888888777  78889898887 8889


Q ss_pred             HHHHHHHHHHHhccCC---hhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCC-------CCCcH
Q 009514          419 IEIQGMYVLGNVATGK---ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSS-------SPGSS  488 (533)
Q Consensus       419 v~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~-------~~~~~  488 (533)
                      ++..++|+|+|++.+.   ++....+++       .|+++.++.+|.+.+.++...+..+|.++....       .....
T Consensus       388 v~~~a~~~l~nl~~~~~~~~~~~~~l~~-------~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~  460 (503)
T d1wa5b_         388 TKKEACWAISNASSGGLQRPDIIRYLVS-------QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNIN  460 (503)
T ss_dssp             HHHHHHHHHHHHHHHTTTCTHHHHHHHH-------TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHH-------CCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccch
Confidence            9999999999998633   233444554       799999999999999999999999988876210       00112


Q ss_pred             HHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          489 GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       489 ~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      .....+.+.|+++.|..|..++++++.+.|...|..+....|
T Consensus       461 ~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~  502 (503)
T d1wa5b_         461 ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE  502 (503)
T ss_dssp             HHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcC
Confidence            345678899999999999888899999999999988776544

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-34  Score=293.60  Aligned_cols=441  Identities=13%  Similarity=0.115  Sum_probs=362.5

Q ss_pred             cccchHHHHhhhcC-CCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhh
Q 009514           15 QEENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV   92 (533)
Q Consensus        15 ~~~~i~~L~~lL~~-~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~   92 (533)
                      ..+.++.|+++|.+ +++.+++.|+.+|.+++..++.+..+++.|++|+|+++|.+ +++++..|+.+|++++.+++..+
T Consensus        57 ~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  136 (529)
T d1jdha_          57 SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             hhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhh
Confidence            35678999999975 56889999999999999999999999999999999999986 77999999999999998888776


Q ss_pred             hhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHh
Q 009514           93 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSS  170 (533)
Q Consensus        93 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~  170 (533)
                      ..+..   .++++.++.+++++++.++..++.+|.+++..+.. .+..+...|+++.|++++..  ...++..+.+++.+
T Consensus       137 ~~~~~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~  212 (529)
T d1jdha_         137 MAVRL---AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE-SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV  212 (529)
T ss_dssp             HHHHH---HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             hHHHh---cCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhH-HHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhh
Confidence            55543   68999999999999999999999999999876543 45667788999999999973  35678889999999


Q ss_pred             hhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHH
Q 009514          171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAA  250 (533)
Q Consensus       171 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a  250 (533)
                      ++.+ ++.+..+.+.|+++.|+.++.+.+  +..+..+++++.+++...   +......|+++.++++++++++.++..+
T Consensus       213 ls~~-~~~~~~~~~~g~~~~L~~ll~~~~--~~~~~~a~~~l~~ls~~~---~~~~~~~~~i~~Lv~ll~~~~~~~~~~a  286 (529)
T d1jdha_         213 LSVC-SSNKPAIVEAGGMQALGLHLTDPS--QRLVQNCLWTLRNLSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTCA  286 (529)
T ss_dssp             HTTS-TTHHHHHHHTTHHHHHHTTTTSSC--HHHHHHHHHHHHHHHTTC---TTCSCCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhcc-ccccchhhhhhhhhhHHHHhcccc--hhhhhhhhhHHHhccccc---cchhhhhhcchhhhhhcccccHHHHHHH
Confidence            9865 455677889999999999887653  778899999999987432   2334456899999999999999999999


Q ss_pred             HHHHHHHhhccccccchhhhhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCch---hHHHHHHhCcHHHHHHhhc
Q 009514          251 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTT---RRSTFIRLGGVKLLVQLSK  325 (533)
Q Consensus       251 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~---~~~~~~~~~~i~~L~~ll~  325 (533)
                      +++|++++...+..+.. +.+.++++.|+.++.  ++.++++..++++|.|++.....   .+..+...++++.++.++.
T Consensus       287 ~~~L~~l~~~~~~~~~~-i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~  365 (529)
T d1jdha_         287 AGILSNLTCNNYKNKMM-VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH  365 (529)
T ss_dssp             HHHHHHHTTTCHHHHHH-HHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTS
T ss_pred             HHHHHhhccchhHHHHH-HHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHh
Confidence            99999998664444444 678899999999884  56789999999999999975543   3445667899999999998


Q ss_pred             CCC-HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCC----------------------hhHHHHHHHHH
Q 009514          326 SMD-STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE----------------------PSVQEQALALV  382 (533)
Q Consensus       326 ~~~-~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~----------------------~~v~~~a~~~L  382 (533)
                      .++ ..++..+++++.+++.+  ++.+..+.+.++++.+++++.+.+                      .++.+.++.++
T Consensus       366 ~~~~~~~~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  443 (529)
T d1jdha_         366 PPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL  443 (529)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHH
Confidence            754 56788999999999764  457888999999999999986433                      35666677778


Q ss_pred             HHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514          383 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  462 (533)
Q Consensus       383 ~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~  462 (533)
                      ..++.. +.....+...+  .++.|+++|.+ +++.++..++++|.+++.. ++.++.+.+       .|+++.|+++++
T Consensus       444 ~~la~~-~~~r~~~~~~~--~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~-~~~~~~i~~-------~g~~~~L~~Ll~  511 (529)
T d1jdha_         444 HILARD-VHNRIVIRGLN--TIPLFVQLLYS-PIENIQRVAAGVLCELAQD-KEAAEAIEA-------EGATAPLTELLH  511 (529)
T ss_dssp             HHHTTS-HHHHHHHHHTT--CHHHHHHGGGC-SCHHHHHHHHHHHHHHTTS-HHHHHHHHH-------TTCHHHHHHGGG
T ss_pred             HHHccC-HHHHHHHHHCC--CHHHHHHHhCC-CCHHHHHHHHHHHHHHhcC-hhhHHHHHH-------CCCHHHHHHHhC
Confidence            777643 33333333444  67899999987 7889999999999999864 555666654       899999999999


Q ss_pred             cCChhHHHHHHHHHHhhc
Q 009514          463 SNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       463 ~~~~~v~~~a~~~L~~l~  480 (533)
                      ++++.++..|+.+|.+++
T Consensus       512 s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         512 SRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             CSSHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHhC
Confidence            999999999999999874

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-32  Score=276.16  Aligned_cols=406  Identities=16%  Similarity=0.152  Sum_probs=336.5

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchh--HHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhh
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLE--QKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEV   91 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~--~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~   91 (533)
                      ..+|+.+++.|+++++..+..|+..+.++.....+  ...+.+.|++|+|+++|+.  ++.+|..|+.+|++++..+++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            47899999999999999999999999987644444  4678999999999999975  4579999999999999888777


Q ss_pred             hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC------chhhhHH
Q 009514           92 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG------RVGDEAS  165 (533)
Q Consensus        92 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~~~~a~  165 (533)
                      ...+..   .++++.++.++++++..++..|+.+|.+++..++. .+..+...|+++.|+.++..+.      .....+.
T Consensus        92 ~~~i~~---~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~-~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (434)
T d1q1sc_          92 TKAVVD---GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  167 (434)
T ss_dssp             HHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred             hhHhhh---ccchhhhhhccccCCHHHHHHHHHHHHHHhccchH-HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHH
Confidence            666653   68999999999999999999999999999986643 4555778899999999997432      1234567


Q ss_pred             HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHH
Q 009514          166 FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSD  245 (533)
Q Consensus       166 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~  245 (533)
                      +.+.++..............+.++.++.++.+.  ++.++..+++++.+++..++.....+...|+++.++++++++++.
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~  245 (434)
T d1q1sc_         168 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP  245 (434)
T ss_dssp             HHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred             HHHHHHhhcccccchhhhhhhHHHHHHHHHhcc--ccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhh
Confidence            788888766544333334456788899977765  478899999999999987777777788889999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc
Q 009514          246 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK  325 (533)
Q Consensus       246 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~  325 (533)
                      ++..++++|.+++...+..... +.+.|+++.|+.++++++++++..++++|+|++.........+.+.|+++.++.++.
T Consensus       246 ~~~~al~~l~~l~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~  324 (434)
T d1q1sc_         246 IVTPALRAIGNIVTGTDEQTQK-VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS  324 (434)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHH-HHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhchhhhhhhHHhhhhHHHHH-HHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHh
Confidence            9999999999998764444444 678999999999999999999999999999999877777888889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC-----CcchHHHHHhhc
Q 009514          326 SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG-----RINSVEYIFAED  400 (533)
Q Consensus       326 ~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~~  400 (533)
                      +++..++..++|++.|++.+.+++....+.+.++++.|++++.+++++++..++++|.++...     ........+.+.
T Consensus       325 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~  404 (434)
T d1q1sc_         325 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC  404 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             ccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHc
Confidence            999999999999999999887777778888999999999999999999999999999998742     222233444443


Q ss_pred             CchHHHHHHHhccCCchhHHHHHHHHHHHh
Q 009514          401 GIILDAVGRQLRIASKAEIEIQGMYVLGNV  430 (533)
Q Consensus       401 ~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l  430 (533)
                      | .++.+.. |.++++++++..|..+|-+.
T Consensus       405 ~-~~~~i~~-L~~~~n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         405 G-GLDKIEA-LQRHENESVYKASLNLIEKY  432 (434)
T ss_dssp             T-SHHHHHH-HHTCSSHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence            3 4666644 55558999999999988664

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.7e-31  Score=268.82  Aligned_cols=372  Identities=16%  Similarity=0.196  Sum_probs=317.0

Q ss_pred             hhHHHHHHhcCC-CCchhhhHHHHHHhhhcC-CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh
Q 009514          145 KLINNLLELLDD-PGRVGDEASFAFSSLIAE-KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC  222 (533)
Q Consensus       145 ~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~  222 (533)
                      ..++.+++.+.. +...+..+...+.++... .......+++.|++|.|++++... .++.++..|+++|.+++..++..
T Consensus        76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~-~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHH
Confidence            457777777763 456677888888877632 222234678899999999988765 35778999999999999887777


Q ss_pred             hHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 009514          223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV  302 (533)
Q Consensus       223 ~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  302 (533)
                      ...+.+.|+++.++.+|.+++.+++..++++|++++...+..+.. +.+.|++++|+.++.+.+++++..++|+|.|++.
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~-l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~  233 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY-VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR  233 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHH-HHhhcccccchhhcccCCHHHHHHHHHHHHHHhc
Confidence            788889999999999999999999999999999998765555555 7889999999999999999999999999999997


Q ss_pred             CCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHH
Q 009514          303 DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV  382 (533)
Q Consensus       303 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L  382 (533)
                      ............++++.+..++.+.++.++..++|++.+++.+ +++....+.+.++++.++.++.++++.++..++.++
T Consensus       234 ~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l  312 (503)
T d1wa5b_         234 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG-PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV  312 (503)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC-CchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHH
Confidence            6555444555678999999999999999999999999999874 456677888999999999999999999999999999


Q ss_pred             HHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514          383 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ  462 (533)
Q Consensus       383 ~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~  462 (533)
                      ++++.+.+.....+++.+  +++.+..++.+ +++.++..++|+|+|++.+++.....+++       .++++.++..+.
T Consensus       313 ~nl~~~~~~~~~~~~~~~--~l~~l~~ll~~-~~~~i~~~~~~~l~nl~~~~~~~~~~i~~-------~~~l~~li~~l~  382 (503)
T d1wa5b_         313 GNIVTGNDLQTQVVINAG--VLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVID-------ANLIPPLVKLLE  382 (503)
T ss_dssp             HHHTTSCHHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHH-------TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccc--hHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccHHHHHHHHH-------ccccchhHHhcc
Confidence            999988877777777777  88999888887 88999999999999999988888887776       799999999999


Q ss_pred             cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          463 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       463 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      +++.+++.+|+|+|.+++... ....+....+.+.|+++.|.++++..+.++...+..+|.++.++++
T Consensus       383 ~~~~~v~~~a~~~l~nl~~~~-~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~  449 (503)
T d1wa5b_         383 VAEYKTKKEACWAISNASSGG-LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE  449 (503)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHT-TTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHHHHHhcc-cccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999521 1234567889999999999999998888888889999999887653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-24  Score=218.07  Aligned_cols=400  Identities=13%  Similarity=0.117  Sum_probs=280.9

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhc-CchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCK-TSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ   94 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~   94 (533)
                      ..||.|+++|+++++++|..|+.+|.++|. ++++|..+.+.|++|+|+++|++ ++.+|..|+.+|.+++.++++.+..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            468999999999999999999999999985 56789999999999999999986 7899999999999999988888766


Q ss_pred             hccccCcccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-----------------C
Q 009514           95 FVGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-----------------D  156 (533)
Q Consensus        95 ~~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-----------------~  156 (533)
                      +..   .++++.++.+++ +.++.++..|+.+|.+++.....  ....... +++.++..+.                 .
T Consensus        82 i~~---~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  155 (457)
T d1xm9a1          82 TRR---QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL--KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVV  155 (457)
T ss_dssp             HHH---TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST--HHHHHHH-HHHHHHHHTTHHHHTCC---------CC
T ss_pred             HHH---CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh--HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccc
Confidence            654   578999999876 56788999999999999986543  3334444 4455544431                 1


Q ss_pred             CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCC----CCchhHHHHHHHHHHhhccchhhhHhhhhhchH
Q 009514          157 PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS----LHPRRFEGILLALADMCSKLECCRSRCLSLQVL  232 (533)
Q Consensus       157 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l  232 (533)
                      +..++..++.++.+++.+.+..+......|+++.++.++.+..    ........+...+......   ...  .....+
T Consensus       156 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~--~~~~~~  230 (457)
T d1xm9a1         156 DPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR---LDA--EVPTRY  230 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT---HHH--HSCCHH
T ss_pred             cHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhh---hHH--HHHHHH
Confidence            2346778889999998776655444445677899998776421    1122333444444333211   100  001111


Q ss_pred             HHH-------------HHhcCCCCHHHH-HHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHH
Q 009514          233 KLV-------------VDALAHDSSDVR-SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAI  297 (533)
Q Consensus       233 ~~l-------------~~~L~~~~~~v~-~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL  297 (533)
                      ..+             ...+........ ..+...+...+.. ...... +...++++.++.++. ..+++++..+.+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l  308 (457)
T d1xm9a1         231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN-PKGSGW-LYHSDAIRTYLNLMGKSKKDATLEACAGAL  308 (457)
T ss_dssp             HHHHHTC----------------------------CCCCCSS-CCGGGG-GGSHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhh-hHHHHH-HHhhcHHHHHHHHHhcccchHHHHHHHHHH
Confidence            111             111111111111 1111111111221 222222 456778899999886 56889999999999


Q ss_pred             HHHhcCCch-----hHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC---
Q 009514          298 SNIVVDFTT-----RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD---  369 (533)
Q Consensus       298 ~nl~~~~~~-----~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~---  369 (533)
                      .+++.....     .+..+.+.|+++.++.+++++++.++..+++++++++.+  ++.+..+. .++++.++.+|..   
T Consensus       309 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~i~-~~~i~~li~~L~~~~~  385 (457)
T d1xm9a1         309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMG-NQVFPEVTRLLTSHTG  385 (457)
T ss_dssp             HHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHH-HHTHHHHHHTTTSCCS
T ss_pred             HHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHHHH-HhhHHHHHHHHhcccc
Confidence            999865433     233455679999999999999999999999999999864  44665554 4678899998853   


Q ss_pred             ---CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCC
Q 009514          370 ---PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK  434 (533)
Q Consensus       370 ---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~  434 (533)
                         .+.+++..++++|.+++..+++....+++.|  .++.|..++.++.++.+++.|+.+|.+++...
T Consensus       386 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g--~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~  451 (457)
T d1xm9a1         386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS--MLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHH--HHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             CcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCC--CHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCH
Confidence               3467999999999999988888888888877  68899998887567889999999999997543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-23  Score=209.90  Aligned_cols=364  Identities=13%  Similarity=0.115  Sum_probs=269.4

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHH
Q 009514          102 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQK  180 (533)
Q Consensus       102 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~  180 (533)
                      ..||.++++++++++.+|..|+.+|.+++..++. .+..+.+.|++|.|+++|++ ++.++..|+++|.+++.++++.+.
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4689999999999999999999999999976653 57788999999999999984 578999999999999999999989


Q ss_pred             HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc----------------CCCCH
Q 009514          181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL----------------AHDSS  244 (533)
Q Consensus       181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L----------------~~~~~  244 (533)
                      .+.+.|+++.+++++... .++.+++.++++|.+++.... .+......+ ++.++..+                ...+.
T Consensus        81 ~i~~~g~v~~li~~l~~~-~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSSTDE-LKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTSSS-THHHHHHHH-HHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHCCChHHHHHHHhcc-CcHHHHHHHHHHHHHHHhhhh-hHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence            999999999999988765 467899999999999987543 333444433 33333332                34578


Q ss_pred             HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC------CHHHHHHHHHHHHHHh---------------cC
Q 009514          245 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT------STAVQVAALGAISNIV---------------VD  303 (533)
Q Consensus       245 ~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~------~~~v~~~a~~aL~nl~---------------~~  303 (533)
                      .++..+++++.+++...++.... +...|+++.++.++++.      .......+...+.+..               ..
T Consensus       158 ~v~~~a~~~l~~~~~~~~~~~~~-~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  236 (457)
T d1xm9a1         158 EVFFNATGCLRNLSSADAGRQTM-RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN  236 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHH-TTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCchHHHHH-HHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Confidence            89999999999998774443333 45567889999888521      1111111111111110               00


Q ss_pred             -----------------------------------CchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCC
Q 009514          304 -----------------------------------FTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE  347 (533)
Q Consensus       304 -----------------------------------~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~  347 (533)
                                                         .......+.+.++++.++.++.. .++.++..+.+++.+++....
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~  316 (457)
T d1xm9a1         237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG  316 (457)
T ss_dssp             C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred             hhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccc
Confidence                                               00111122334567778777654 567889999999999976443


Q ss_pred             h----HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC-----Cchh
Q 009514          348 D----KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-----SKAE  418 (533)
Q Consensus       348 ~----~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~-----~~~~  418 (533)
                      .    ..+..+.+.++++.+++++.+++++++..+++++.+++.+.. ... .+..+  .++.+...|...     .+++
T Consensus       317 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-~~~-~i~~~--~i~~li~~L~~~~~~~~~~~~  392 (457)
T d1xm9a1         317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-LHR-VMGNQ--VFPEVTRLLTSHTGNTSNSED  392 (457)
T ss_dssp             SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-GHH-HHHHH--THHHHHHTTTSCCSCSTTHHH
T ss_pred             cchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-HHH-HHHHh--hHHHHHHHHhccccCcCCcHH
Confidence            2    123445567889999999999999999999999999987643 333 33444  467777777542     3457


Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHhhcC
Q 009514          419 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       419 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-~~~v~~~a~~~L~~l~~  481 (533)
                      ++..++++|.+++..+++.++.+.+       .|+++.|++++.+. ++.++.+|+.+|.+|+.
T Consensus       393 v~~~a~~~L~~l~~~~~~~~~~l~~-------~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         393 ILSSACYTVRNLMASQPQLAKQYFS-------SSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHCC-------HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH-------CCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence            9999999999999888877887775       78999999999875 57899999999999975

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-20  Score=194.77  Aligned_cols=458  Identities=13%  Similarity=0.073  Sum_probs=294.0

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCC-hhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNN-PEVVSQ   94 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~-~~~~~~   94 (533)
                      ..++.+..++.+++..||+.|+..+..++.......  .....+|.+..+..+ ....|..|...+..+.... +...  
T Consensus        87 ~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~--~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~--  162 (588)
T d1b3ua_          87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD--LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK--  162 (588)
T ss_dssp             GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH--HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH--
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH--
Confidence            455777788888888899999999988875433221  233455555566665 3467777777777765332 2221  


Q ss_pred             hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhc
Q 009514           95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIA  173 (533)
Q Consensus        95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~  173 (533)
                            ...++.+.+++++.++.+|..|+.++..++....    ........+|.+..++++ .+.++..+..++..++.
T Consensus       163 ------~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~  232 (588)
T d1b3ua_         163 ------AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ  232 (588)
T ss_dssp             ------HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhc
Confidence                  2345667788999999999999999999988543    224456788888888885 46788899999888864


Q ss_pred             CCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHH
Q 009514          174 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC  253 (533)
Q Consensus       174 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~  253 (533)
                      ..+..   ......+|.+.+++.+.  ++.+|..++.+|+.++..   ..........+|.+..++++.++.+|..+++.
T Consensus       233 ~~~~~---~~~~~i~~~l~~~~~D~--~~~Vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~  304 (588)
T d1b3ua_         233 LLPQE---DLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKA---VGPEITKTDLVPAFQNLMKDCEAEVRAAASHK  304 (588)
T ss_dssp             HSCHH---HHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHH---HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             cCCHH---HHHHHHHHHHHHhcccc--cHHHHHHHHHhHHHHHHH---hhhhhhhhhhhHHHHHHHhccchHHHHHHHHH
Confidence            32221   11123467777766554  488999999999988742   22233445689999999999999999999999


Q ss_pred             HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514          254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL  333 (533)
Q Consensus       254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  333 (533)
                      +..++............-..+++.+...+.++++.++..++.++..++...+.   .......++.+..+++++++.++.
T Consensus       305 l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~---~~~~~~l~p~l~~~l~d~~~~v~~  381 (588)
T d1b3ua_         305 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRL  381 (588)
T ss_dssp             HHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHH
T ss_pred             HHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch---hHHHHHHHHHHHHHHHhhhhhhhh
Confidence            99987653322211123356788888889999999999999988877642221   112235688888999999999999


Q ss_pred             HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514          334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI  413 (533)
Q Consensus       334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~  413 (533)
                      .++.++..+....+..   . .....++.+..++.++++.++..++..+..++..-..   ..+..  .+.+.+...+.+
T Consensus       382 ~~~~~l~~~~~~~~~~---~-~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~---~~~~~--~l~~~l~~~l~D  452 (588)
T d1b3ua_         382 NIISNLDCVNEVIGIR---Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDE--KLNSLCMAWLVD  452 (588)
T ss_dssp             HHHTTCHHHHHHSCHH---H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCH--HHHHHHHHGGGC
T ss_pred             HHHHHHHHHHhhcchh---h-hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh---HhHHH--HHHHHHHhhccC
Confidence            9888887775433321   1 1233467778888888888998888888777632100   00001  144555555555


Q ss_pred             CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514          414 ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK  493 (533)
Q Consensus       414 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  493 (533)
                       +...|+..|+.+++.++....  .+...        ..++|.+.++++++++..|..++.++..+..    ...   ..
T Consensus       453 -~~~~VR~~A~~~L~~l~~~~~--~~~~~--------~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~----~~~---~~  514 (588)
T d1b3ua_         453 -HVYAIREAATSNLKKLVEKFG--KEWAH--------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----VCG---QD  514 (588)
T ss_dssp             -SSHHHHHHHHHHHHHHHHHHC--HHHHH--------HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH----HHH---HH
T ss_pred             -CchhHHHHHHHHHHHHHHHhC--cHHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----HcC---hH
Confidence             667777777777777654211  01111        2344555556666666666666666555542    000   01


Q ss_pred             HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514          494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN  526 (533)
Q Consensus       494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~  526 (533)
                      .....++|.|.++++|+.+.||..+.++|.++.
T Consensus       515 ~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~  547 (588)
T d1b3ua_         515 ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG  547 (588)
T ss_dssp             HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            112234555555555555555555555555554

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-19  Score=187.68  Aligned_cols=456  Identities=14%  Similarity=0.140  Sum_probs=323.6

Q ss_pred             chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514           18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV   96 (533)
Q Consensus        18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~   96 (533)
                      .+|.+..+.+++....+..|+.++..+........   .....+.+.+++.. ++.||..+..+++.++...+.-.  . 
T Consensus       127 l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~---~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~--~-  200 (588)
T d1b3ua_         127 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV---KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN--V-  200 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH--H-
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHH--H-
Confidence            34556667776667778888888888765432211   12246777778876 78999999999999886532210  0 


Q ss_pred             cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCC
Q 009514           97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEK  175 (533)
Q Consensus        97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~  175 (533)
                         ....++.+..+++++++.+|..|+.++..++...+.    .......+|.+.+++.+. ..++..++.++.+++...
T Consensus       201 ---~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~  273 (588)
T d1b3ua_         201 ---KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV  273 (588)
T ss_dssp             ---HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred             ---HHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHh
Confidence               123466677889999999999999999998875432    233456788899988764 568888888888876321


Q ss_pred             HHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccc-hhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHH
Q 009514          176 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL  254 (533)
Q Consensus       176 ~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L  254 (533)
                      .   ........++.+..++.+.  ++++|..++.++..++..- ........-...+|.+...+++.++.+|..++.++
T Consensus       274 ~---~~~~~~~l~~~l~~ll~d~--~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l  348 (588)
T d1b3ua_         274 G---PEITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVI  348 (588)
T ss_dssp             C---HHHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTG
T ss_pred             h---hhhhhhhhhHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHH
Confidence            1   1122345678888877765  4789999999999887532 22222333356788999999999999999999888


Q ss_pred             HHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHH
Q 009514          255 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN  334 (533)
Q Consensus       255 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~  334 (533)
                      ..++...+.   . -.....+|.+..++++++++++..+..++..+......  .. .....++.+..++++.++.+|..
T Consensus       349 ~~~~~~~~~---~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~~-~~~~ll~~l~~~~~d~~~~~r~~  421 (588)
T d1b3ua_         349 MGLSPILGK---D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELAEDAKWRVRLA  421 (588)
T ss_dssp             GGGHHHHCH---H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             hhhhhccch---h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--hh-hhhHHHHHHHHHHhcccHHHHHH
Confidence            877643221   1 12345688899999999999999999988877653322  11 22356788889999999999999


Q ss_pred             HHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC
Q 009514          335 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA  414 (533)
Q Consensus       335 al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~  414 (533)
                      ++.++..++...+++    .......+.+..++.++...+|..|+++|..++.....  +.... .  +++.+...+.+ 
T Consensus       422 ~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~--~~~~~-~--i~~~l~~~~~~-  491 (588)
T d1b3ua_         422 IIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAHA-T--IIPKVLAMSGD-  491 (588)
T ss_dssp             HHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHH-H--THHHHHHTTTC-
T ss_pred             HHHHHHHHHHHcChH----hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc--HHHHH-H--HHHHHHHHhcC-
Confidence            999998886533221    12223456778889999999999999999998753211  11111 1  66777776665 


Q ss_pred             CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHH
Q 009514          415 SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKL  494 (533)
Q Consensus       415 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l  494 (533)
                      ++..+|..++.+++.+....+  .+ .+.       ..++|.+.++++++.++||..++++|..+...  -+..     .
T Consensus       492 ~~~~~R~~~~~~l~~l~~~~~--~~-~~~-------~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~--~~~~-----~  554 (588)
T d1b3ua_         492 PNYLHRMTTLFCINVLSEVCG--QD-ITT-------KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI--LDNS-----T  554 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHH--HH-HHH-------HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG--SCHH-----H
T ss_pred             CCHHHHHHHHHHHHHHHHHcC--hH-HHH-------HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--cCcH-----h
Confidence            788899999999988875322  22 222       56889999999999999999999999999842  1211     1


Q ss_pred             HHCCcHHHHHhhhcCCCCcHHHHHHHHHHHH
Q 009514          495 HDAGIVSHVKNMVNDPCLDVKLRVKTALEQF  525 (533)
Q Consensus       495 ~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~  525 (533)
                      ....+.+.|.++++|++.+||..|.+||..+
T Consensus       555 ~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         555 LQSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            2233568888999999999999999999876

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-18  Score=162.04  Aligned_cols=194  Identities=23%  Similarity=0.269  Sum_probs=171.1

Q ss_pred             chhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHH-hcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHH
Q 009514          202 PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR  280 (533)
Q Consensus       202 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~  280 (533)
                      .+.++.|+.+|.+++. +.+++..+...|+++.++. +++++++.+|..|+++|++++.+.+..+.. +.+.|++|.|++
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~-~~~~~~i~~Lv~  108 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQ-VLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCchHHHHH
Confidence            4568889999999995 4567788899999999886 788999999999999999999875554444 778999999999


Q ss_pred             hhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhc
Q 009514          281 LLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT  359 (533)
Q Consensus       281 lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~  359 (533)
                      ++. +++++++..++++|.+++.+++..+..+.+.|+++.|++++++++..++..++++|.+++.. +++.+..+.+.++
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~  187 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTH
T ss_pred             HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHhhh
Confidence            996 67899999999999999998888888999999999999999999999999999999999874 4668889999999


Q ss_pred             HHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHh
Q 009514          360 ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFA  398 (533)
Q Consensus       360 ~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~  398 (533)
                      ++.+++++.++++++++.++++|.+++..++.....+..
T Consensus       188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999999999999887766555443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.2e-18  Score=158.92  Aligned_cols=185  Identities=16%  Similarity=0.161  Sum_probs=162.6

Q ss_pred             chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHh
Q 009514          159 RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA  238 (533)
Q Consensus       159 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~  238 (533)
                      +.+..|+.+|.+++. +.+..+.+...||++.++..+.+. .++.+|..|+++|++++.+++..+..+.+.|++|.++++
T Consensus        32 ~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s-~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          32 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            356778889999985 455667788999999998744444 358899999999999999888888899999999999999


Q ss_pred             cC-CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcH
Q 009514          239 LA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV  317 (533)
Q Consensus       239 L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i  317 (533)
                      +. +.++.++..++++|.++++..+..... +...|+++.|++++++++++++..++++|.|++...+..+..+.+.|++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQ-FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHH-HHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence            96 568899999999999999876655555 7889999999999999999999999999999998888888899999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 009514          318 KLLVQLSKSMDSTIRLNALRALRNLIFLA  346 (533)
Q Consensus       318 ~~L~~ll~~~~~~~~~~al~aL~~l~~~~  346 (533)
                      +.|+.+++++++.+|..++++|.+++...
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTDF  217 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999998754

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.6e-17  Score=176.98  Aligned_cols=479  Identities=13%  Similarity=0.113  Sum_probs=280.4

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      ..++.++..++++++.++..|+.++..+...........-...++.+...... ++.+|..+..+|..+....++.... 
T Consensus       172 ~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~-  250 (888)
T d1qbkb_         172 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP-  250 (888)
T ss_dssp             TTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTT-
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHH-
Confidence            36789999999999999999999998765432211111112356667666665 6689999999999887666544211 


Q ss_pred             ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-------------------
Q 009514           96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-------------------  156 (533)
Q Consensus        96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-------------------  156 (533)
                         .-...++.++..+++.+.+++..|..++..++..........-.-...+|.+.+.+..                   
T Consensus       251 ---~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  327 (888)
T d1qbkb_         251 ---HMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIP  327 (888)
T ss_dssp             ---TTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSC
T ss_pred             ---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhh
Confidence               1234555566677889999999999887766643210000000000111111111000                   


Q ss_pred             ------------------------------------------CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHH--
Q 009514          157 ------------------------------------------PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY--  192 (533)
Q Consensus       157 ------------------------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~--  192 (533)
                                                                ...++..+..+|..++....        ...++.++  
T Consensus       328 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~--------~~il~~~l~~  399 (888)
T d1qbkb_         328 DSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYR--------DELLPHILPL  399 (888)
T ss_dssp             CCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCC--------SSSHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhH--------HHHHHHHHHH
Confidence                                                      00122333344444432211        12234444  


Q ss_pred             --HhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhh
Q 009514          193 --NHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFM  270 (533)
Q Consensus       193 --~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~  270 (533)
                        +.+.+  .++..|+.|+.+++.++....+..... -...++.+++.++++++.||..++++|+.++......... -.
T Consensus       400 l~~~l~s--~~~~~reaa~~alg~i~eg~~~~~~~~-l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~-~~  475 (888)
T d1qbkb_         400 LKELLFH--HEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD-TY  475 (888)
T ss_dssp             HHHTTTS--SSHHHHHHHHHHHHHHTTTSHHHHTTT-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH-HH
T ss_pred             HHHhhcc--chhHHHHHHHHHhhhhhhhHHHHhccc-chhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhh-hh
Confidence              44443  358899999999999885432211111 1357899999999999999999999999997642221111 13


Q ss_pred             hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh
Q 009514          271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC  350 (533)
Q Consensus       271 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~  350 (533)
                      -...++.++..+.++++.|+..|+++|.+++........... ...++.+...+.......+..+..+++.++....+..
T Consensus       476 ~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~  554 (888)
T d1qbkb_         476 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL  554 (888)
T ss_dssp             TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccc
Confidence            356888899999999999999999999999853222111111 2456667777776666666666666665543211111


Q ss_pred             -HHHHHHhhcHHHHHhhh------------------------------------------------------------CC
Q 009514          351 -KEEIFMELTASLLASLI------------------------------------------------------------CD  369 (533)
Q Consensus       351 -~~~i~~~~~~~~l~~lL------------------------------------------------------------~~  369 (533)
                       +....+. .++.+.+..                                                            ..
T Consensus       555 ~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  633 (888)
T d1qbkb_         555 NKPEYIQM-LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA  633 (888)
T ss_dssp             CSHHHHHH-HHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCC
T ss_pred             cchHHHHH-HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence             0000000 011111100                                                            01


Q ss_pred             CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhh
Q 009514          370 PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA  449 (533)
Q Consensus       370 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~  449 (533)
                      .+.++...++.++..+..+-......++... .+++.+...+.+ .++.++..+..+++.++..........+       
T Consensus       634 ~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~-~l~~~l~~~l~~-~~~~vr~~a~~llgdl~~~~~~~~~~~l-------  704 (888)
T d1qbkb_         634 PDKDFMIVALDLLSGLAEGLGGNIEQLVARS-NILTLMYQCMQD-KMPEVRQSSFALLGDLTKACFQHVKPCI-------  704 (888)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHTTTTHHHHHTS-CHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTGGGH-------
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhhhhhHh-hHHHHHHHHhCC-CChHHHHHHHHHHHHHHHhhhHHHHHHH-------
Confidence            1223333333444433322111111212111 155666666666 7889999999999988875554444444       


Q ss_pred             hhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCC--cHHHHHHHHHHHHhh
Q 009514          450 ENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL--DVKLRVKTALEQFNS  527 (533)
Q Consensus       450 ~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~--~v~~~a~~aL~~~~~  527 (533)
                       ..+++.+...|.+++..++.+|+|+++.++..-...    ..... ..+++.|++++++++.  .+++++..+|+++..
T Consensus       705 -~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~----~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~  778 (888)
T d1qbkb_         705 -ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE----MQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGY  778 (888)
T ss_dssp             -HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGG----GGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH----hhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence             357788999999999999999999999998521111    11111 1367889999876543  488999999998865


Q ss_pred             h
Q 009514          528 F  528 (533)
Q Consensus       528 ~  528 (533)
                      .
T Consensus       779 ~  779 (888)
T d1qbkb_         779 V  779 (888)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-12  Score=130.64  Aligned_cols=390  Identities=14%  Similarity=0.129  Sum_probs=247.4

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcC--ChhhHHHHHHHHHHhhhcCCCcc-
Q 009514           61 KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIRNASPCYL-  137 (533)
Q Consensus        61 ~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~-  137 (533)
                      +.|-+.+..+..+|..|-..|..+...++           .+.+..+...+.+.  +..+|..|+..|.+......... 
T Consensus         4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~~-----------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~   72 (458)
T d1ibrb_           4 TILEKTVSPDRLELEAAQKFLERAAVENL-----------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   72 (458)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcCc-----------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhh
Confidence            34445555567889999888888775432           23456667766543  46789999888887765432110 


Q ss_pred             ---------hhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHH
Q 009514          138 ---------QDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI  208 (533)
Q Consensus       138 ---------~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a  208 (533)
                               ........+.+.+++.+.++...+..++.+++.++......   ..-.+.++.+++.+.+...++..++.+
T Consensus        73 ~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~  149 (458)
T d1ibrb_          73 AQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKEST  149 (458)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             hHHhhhhccCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHH
Confidence                     01123445677788888765555556677776665321000   000245778888787765566778888


Q ss_pred             HHHHHHhhccchhhhHhhhhhchHHHHHHhcCC--CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514          209 LLALADMCSKLECCRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS  286 (533)
Q Consensus       209 ~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~  286 (533)
                      +.++..++.........-.....++.++..+.+  .+..++..+.+++..+..................+.+..++.+++
T Consensus       150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  229 (458)
T d1ibrb_         150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  229 (458)
T ss_dssp             HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence            999888875332221112223567888888875  467899999999998865422111110223345667777888999


Q ss_pred             HHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh------------------
Q 009514          287 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED------------------  348 (533)
Q Consensus       287 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~------------------  348 (533)
                      ++++..++.++..++...+......+.....+.+....++.++.++..++..+..++.....                  
T Consensus       230 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
T d1ibrb_         230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT  309 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHH
Confidence            99999999999999875544322222223334455667788899999999988887542100                  


Q ss_pred             --HhHHHHHHhhcHHHHHhhhC-------CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhH
Q 009514          349 --KCKEEIFMELTASLLASLIC-------DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI  419 (533)
Q Consensus       349 --~~~~~i~~~~~~~~l~~lL~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v  419 (533)
                        ....... ....+.+...+.       +.++.++..+..++..++...++.   ++.   .+++.+.+.+.+ +++.+
T Consensus       310 ~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~---~l~~~i~~~l~s-~~~~~  381 (458)
T d1ibrb_         310 SKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVP---HVLPFIKEHIKN-PDWRY  381 (458)
T ss_dssp             CCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HHH---HHHHHHHHHTTC-SSHHH
T ss_pred             HHHHHHHHH-HHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh---hhh---HHHHHHHHHhcC-CCHHH
Confidence              0000111 122344444432       234568888888888877543322   111   155667677776 88999


Q ss_pred             HHHHHHHHHHhccCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          420 EIQGMYVLGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       420 ~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      +..++.+|+.++.+.. ......+        ..++|.++..++++++.||.+|+|+|++++
T Consensus       382 r~aal~~l~~i~~~~~~~~~~~~l--------~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         382 RDAAVMAFGCILEGPEPSQLKPLV--------IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             HHHHHHHHHHTSSSSCTTTTCTTT--------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHhHHHHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999997542 2222233        467899999999999999999999999997

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.6e-13  Score=149.26  Aligned_cols=482  Identities=11%  Similarity=0.045  Sum_probs=274.8

Q ss_pred             cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514           17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF   95 (533)
Q Consensus        17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~   95 (533)
                      ..++.+..++.++++.++..++.++..+......+..-.-.+.++.++..+.+ ++.++..|+..+..+++....  ...
T Consensus       213 ~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~--~~~  290 (888)
T d1qbkb_         213 SFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDV  290 (888)
T ss_dssp             HCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGG--TTT
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhh--HHH
Confidence            56688889999999999999999998877543322111112344445444544 568888888777666643110  000


Q ss_pred             ccccCcccHHH-------------------------------------------------HH----HHH---h----cCC
Q 009514           96 VGPDTGRTLSC-------------------------------------------------II----EIV---K----DRF  115 (533)
Q Consensus        96 ~~~~~~~~i~~-------------------------------------------------l~----~ll---~----~~~  115 (533)
                      ....-...++.                                                 ..    ...   .    ...
T Consensus       291 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (888)
T d1qbkb_         291 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISD  370 (888)
T ss_dssp             TTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSC
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhh
Confidence            00000000000                                                 00    000   0    011


Q ss_pred             hhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHh
Q 009514          116 ARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNH  194 (533)
Q Consensus       116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~  194 (533)
                      ..+|..|..+|..++...+..    + -.-.+|.+.+.+.++ ...|+.|..++..++.+..+.....+ ...++.++..
T Consensus       371 ~~~r~~a~~~L~~l~~~~~~~----i-l~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~  444 (888)
T d1qbkb_         371 WNLRKCSAAALDVLANVYRDE----L-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQC  444 (888)
T ss_dssp             CSSHHHHHHHSTTTTTTCCSS----S-HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhHhhhhHHH----H-HHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHh
Confidence            236778888877777644321    1 234566666777644 45677788889888876554221111 1245677777


Q ss_pred             hhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCc
Q 009514          195 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI  274 (533)
Q Consensus       195 L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~  274 (533)
                      +.++  ++.+|..++++|+.++.........-.-...++.+++.+.+.++.|+.+|+++|.++.......-..  .-..+
T Consensus       445 l~d~--~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p--~~~~i  520 (888)
T d1qbkb_         445 LSDK--KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP--YLAYI  520 (888)
T ss_dssp             TTSS--CHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGG--GHHHH
T ss_pred             ccCC--CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhh--HHHHH
Confidence            7654  4889999999999987522111011112357888999999999999999999999998653332222  22456


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch--hHHHHHHhCcHHHHHHhh------------------------cC--
Q 009514          275 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTT--RRSTFIRLGGVKLLVQLS------------------------KS--  326 (533)
Q Consensus       275 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~--~~~~~~~~~~i~~L~~ll------------------------~~--  326 (533)
                      ++.++..+...+.+.+..+..+++.++.....  ......+ ..++.+....                        ..  
T Consensus       521 l~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~  599 (888)
T d1qbkb_         521 LDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF  599 (888)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHH
Confidence            67777777777777666666666665531110  0001110 1111111111                        00  


Q ss_pred             ----------------------------------CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCCh
Q 009514          327 ----------------------------------MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP  372 (533)
Q Consensus       327 ----------------------------------~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~  372 (533)
                                                        .+..+...++.++..+....++.....+.....++.+...+++.++
T Consensus       600 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~  679 (888)
T d1qbkb_         600 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP  679 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCCh
Confidence                                              1122222333333333322221112222222345667778889999


Q ss_pred             hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhh
Q 009514          373 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENK  452 (533)
Q Consensus       373 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~  452 (533)
                      ++++.+..+++.++...+......+.   .+++.+.+.|.+ +...++..++|+++.++....+.....+        ..
T Consensus       680 ~vr~~a~~llgdl~~~~~~~~~~~l~---~~~~~l~~~L~~-~~~~v~~~a~~~ig~ia~~~~~~~~py~--------~~  747 (888)
T d1qbkb_         680 EVRQSSFALLGDLTKACFQHVKPCIA---DFMPILGTNLNP-EFISVCNNATWAIGEISIQMGIEMQPYI--------PM  747 (888)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTGGGHH---HHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHTGGGGGGGS--------HH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHhCc-CCHHHHHHHHHHHHHHHHHHHHHhhhhH--------HH
Confidence            99999999998887654432221111   156667666666 6778999999999999864443444444        36


Q ss_pred             hHHHHHHhhccCC--hhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcC-CCCcHHHHHHHHHHHHhhh
Q 009514          453 AQSCIIKFLQSND--SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND-PCLDVKLRVKTALEQFNSF  528 (533)
Q Consensus       453 ~~~~lv~~L~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~-~~~~v~~~a~~aL~~~~~~  528 (533)
                      +++.|+..+++++  ..++.+++.+|+.++.    ..++...... ..+++.++..+.. .+.+-++.|...+-.+.+.
T Consensus       748 il~~L~~il~~~~~~~~v~~n~~~~lgrl~~----~~p~~~~~~l-~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~  821 (888)
T d1qbkb_         748 VLHQLVEIINRPNTPKTLLENTAITIGRLGY----VCPQEVAPML-QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV  821 (888)
T ss_dssp             HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH----HCHHHHGGGG-GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHHHHH----HCHHHHHhhH-HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence            7789999998764  4599999999999985    2222222111 2245666665533 3444455666666665543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=2.9e-11  Score=129.91  Aligned_cols=482  Identities=14%  Similarity=0.119  Sum_probs=283.8

Q ss_pred             HHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCch---HHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514           20 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL---KRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQ   94 (533)
Q Consensus        20 ~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i---~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~   94 (533)
                      ..++..|.++++.++..++.+++.++..     .+.+..|.   +.|++.+.+  +..++..++.+|+.++...+.....
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~-----~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADI-----ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHH-----HGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHH-----hCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            6677888889999999999999988732     12223343   345555554  4578889999999998654433221


Q ss_pred             hccccCcccHHHHHHHHh--cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhh
Q 009514           95 FVGPDTGRTLSCIIEIVK--DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSL  171 (533)
Q Consensus        95 ~~~~~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l  171 (533)
                      +.. .....+..++..+.  +.+..+|..|..++.++...-.............++.+...+.+ ++.++..+..++..+
T Consensus       173 ~~~-~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i  251 (861)
T d2bpta1         173 LVS-SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            111 01123444444443  45678999999999987765422111122334567777777774 567888888888888


Q ss_pred             hcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh----------------hhchHHHH
Q 009514          172 IAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL----------------SLQVLKLV  235 (533)
Q Consensus       172 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~----------------~~~~l~~l  235 (533)
                      +...+..-..... ..+..+....... .++.++..++..+..++...........                -...++.+
T Consensus       252 ~~~~~~~~~~~l~-~~l~~l~~~~~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l  329 (861)
T d2bpta1         252 MSKYYTFMKPYME-QALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNL  329 (861)
T ss_dssp             HHHHGGGCHHHHH-HTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            7432211000001 1222332222222 3577888888887777643211111110                01345666


Q ss_pred             HHhcCC-------CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514          236 VDALAH-------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR  308 (533)
Q Consensus       236 ~~~L~~-------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~  308 (533)
                      .+.+..       .+...+..+..++..++...+..     .-....+.+...+.++++..+..+..+++.++.......
T Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~  404 (861)
T d2bpta1         330 LNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH-----ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ  404 (861)
T ss_dssp             HHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG-----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchh-----hhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Confidence            666642       34578888888888887653321     111223444556678899999999999999987554432


Q ss_pred             HHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh-----HhHHHHHH----h----------------------
Q 009514          309 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED-----KCKEEIFM----E----------------------  357 (533)
Q Consensus       309 ~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~-----~~~~~i~~----~----------------------  357 (533)
                      ....-...++.++..+.++++.+|..++++++.++...++     ..-..+..    .                      
T Consensus       405 ~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~  484 (861)
T d2bpta1         405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQL  484 (861)
T ss_dssp             HHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHh
Confidence            2222245788899999999999999999999987643211     00000000    0                      


Q ss_pred             -------------hcHHHHHhhhC--CCChhHHHHHHHHHHHhhcCCcchHH----------------------------
Q 009514          358 -------------LTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVE----------------------------  394 (533)
Q Consensus       358 -------------~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~----------------------------  394 (533)
                                   ..+..++....  +.+..++..+..++..+....++...                            
T Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~  564 (861)
T d2bpta1         485 AEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLE  564 (861)
T ss_dssp             SSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHH
T ss_pred             hhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                         01112222221  23455666666666665533222110                            


Q ss_pred             -----------------HHHhhcC--------chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhh
Q 009514          395 -----------------YIFAEDG--------IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA  449 (533)
Q Consensus       395 -----------------~i~~~~~--------~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~  449 (533)
                                       .+++..+        .+++.+.+.+....+..++..++.+++.++..........+       
T Consensus       565 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l-------  637 (861)
T d2bpta1         565 DAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-------  637 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-------
T ss_pred             HHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHH-------
Confidence                             0000000        13444555555545667888888888888764333344444       


Q ss_pred             hhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC--CCcHHHHHHHHHHHHhh
Q 009514          450 ENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQFNS  527 (533)
Q Consensus       450 ~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~aL~~~~~  527 (533)
                       ..++|.+...+++.+..++..|+.+++.++..-    .+...... ..+++.|.+.++++  +.++|..+..+|+.+..
T Consensus       638 -~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~----~~~~~~~~-~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~  711 (861)
T d2bpta1         638 -ETFSPYLLKALNQVDSPVSITAVGFIADISNSL----EEDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIAS  711 (861)
T ss_dssp             -HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT----GGGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred             -HHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHh----HHHhHhhH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence             367789999999999999999999999988521    11111111 23567888888654  56788889999988754

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-11  Score=138.54  Aligned_cols=477  Identities=13%  Similarity=0.141  Sum_probs=293.0

Q ss_pred             hHHHHhhhcCCCcchhHHHHHHHHHhhcCchhH-HHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514           19 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQ-KLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV   96 (533)
Q Consensus        19 i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~-~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~   96 (533)
                      +..|+.-++++|++.|.-|+.-|.+.-..+... ..-.....++.++++|.. +..||..|+.+|+.+....++..  + 
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--~-   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--V-   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--H-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--H-
Confidence            567788889999999999988777644322110 000112367889999986 78999999999999976544321  1 


Q ss_pred             cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcc----hhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHh
Q 009514           97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYL----QDVGIKTKLINNLLELLDD--PGRVGDEASFAFSS  170 (533)
Q Consensus        97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~  170 (533)
                          ...++.++..+.+++..+|..+..+|..+....+...    ....+....++.+...+..  +..++.++..++..
T Consensus        82 ----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             ----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence                2356667777778888899999888888765432111    1122233455555555543  34567788888887


Q ss_pred             hhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-CCCHHHHHH
Q 009514          171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSA  249 (533)
Q Consensus       171 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~  249 (533)
                      +.......-.. .....++.++..+.+.  .+.+|..|+.+|+.++...+..    .-...++.+++.+. +.+..++..
T Consensus       158 l~~~~g~~l~~-~~~~il~~l~~~l~~~--~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~  230 (1207)
T d1u6gc_         158 MLSRQGGLLVN-FHPSILTCLLPQLTSP--RLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRT  230 (1207)
T ss_dssp             HHHHTCSSCTT-THHHHHHHHGGGGGCS--SHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTT
T ss_pred             HHHHhhHhhHH-HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHH
Confidence            75322110000 0012355666666655  4779999999999997643221    11235666666554 556677778


Q ss_pred             HHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh------
Q 009514          250 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL------  323 (533)
Q Consensus       250 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l------  323 (533)
                      ++.++..+++..+..-..  .-..+++.++..+.+++.++++.+..++..++...+....... ...++.+...      
T Consensus       231 ~~~~l~~l~~~~~~~~~~--~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~ii~~~l~~l~~dp~  307 (1207)
T d1u6gc_         231 YIQCIAAISRQAGHRIGE--YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPN  307 (1207)
T ss_dssp             HHHHHHHHHHHSSGGGTT--SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC--
T ss_pred             HHHHHHHHHHHcchhhHH--HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhH-HHHHHHHHHHHhcCcc
Confidence            889999998764432111  2357789999999999999999999999888765433211111 0111111111      


Q ss_pred             -------------------------------hcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCCh
Q 009514          324 -------------------------------SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP  372 (533)
Q Consensus       324 -------------------------------l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~  372 (533)
                                                     ..+....+|..++.+|..+....+ +.-.... ....+.++..+.+.++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~~-~~~~~~L~~~l~d~~~  385 (1207)
T d1u6gc_         308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFY-KTVSPALISRFKEREE  385 (1207)
T ss_dssp             ----------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHH-TTTHHHHHSTTSCSSS
T ss_pred             hhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHHH-HHHHHHHHHHhcCCch
Confidence                                           112235689999999998876543 2222222 3457888999999999


Q ss_pred             hHHHHHHHHHHHhhcCCcchH----------------HHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChh
Q 009514          373 SVQEQALALVRNLVDGRINSV----------------EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES  436 (533)
Q Consensus       373 ~v~~~a~~~L~~l~~~~~~~~----------------~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~  436 (533)
                      .++..++.++..+........                ..+......+++.+.+.+.+ .++.++..++..+..+....+.
T Consensus       386 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~-~~~~~r~~~~~~l~~l~~~~~~  464 (1207)
T d1u6gc_         386 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE-KSVKTRQCCFNMLTELVNVLPG  464 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHcch
Confidence            999999988887763311110                11111111255666666666 7788999999988887753322


Q ss_pred             hHHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcH
Q 009514          437 HKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV  514 (533)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v  514 (533)
                      .....+        ..+++.+...+.+.  ...++..++.++..+......   +.... .-....+.+...+.++...+
T Consensus       465 ~l~~~l--------~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~---~~~~~-~~~~l~~~~~~~~~~~~~~i  532 (1207)
T d1u6gc_         465 ALTQHI--------PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP---QVFHP-HVQALVPPVVACVGDPFYKI  532 (1207)
T ss_dssp             TTGGGH--------HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG---GGGHH-HHTTTHHHHHHHHTCSSHHH
T ss_pred             HHHHhh--------HhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccH---HHHHH-HHHhhhhhHHHHHccccHHH
Confidence            111222        23456677777654  456888999999888753221   11122 23456777878788777777


Q ss_pred             HHHHHHHHHHHhh
Q 009514          515 KLRVKTALEQFNS  527 (533)
Q Consensus       515 ~~~a~~aL~~~~~  527 (533)
                      +..+..++..+..
T Consensus       533 ~~~al~~~~~l~~  545 (1207)
T d1u6gc_         533 TSEALLVTQQLVK  545 (1207)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777677666654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=3.3e-10  Score=121.43  Aligned_cols=446  Identities=13%  Similarity=0.141  Sum_probs=245.0

Q ss_pred             ccchHHHHhhhcCCC-cchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhh---cC---ChHHHHHHHHHHHHHhcCC
Q 009514           16 EENMEFLLSLLNNES-ENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLL---GG---SLIQRDASLESIATIFKNN   88 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~-~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL---~~---~~~v~~~al~aL~~l~~~~   88 (533)
                      ++.++.|+..+++++ ..++..|..++..+|........-......+.+..++   .+   +..+|..++.++..+....
T Consensus       133 peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~  212 (861)
T d2bpta1         133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI  212 (861)
T ss_dssp             HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            356777888887655 4577888999999885433211111111222333333   22   4689999999999887654


Q ss_pred             hhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHH-HHhcCC-CCchhhhHHH
Q 009514           89 PEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL-LELLDD-PGRVGDEASF  166 (533)
Q Consensus        89 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L-~~ll~~-~~~~~~~a~~  166 (533)
                      +......  ......++.+...++++++.++..+..++..+....+..... ... ..+..+ ....++ ++.++..+..
T Consensus       213 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~-~l~-~~l~~l~~~~~~~~~~~v~~~~~~  288 (861)
T d2bpta1         213 KNNMERE--GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKP-YME-QALYALTIATMKSPNDKVASMTVE  288 (861)
T ss_dssp             HHHHTSH--HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHH-HHH-HTHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hHhHHhh--hhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHhcCccHHHHHHHHH
Confidence            4331100  001224555677889999999999999999987754321111 111 122222 222222 3344544444


Q ss_pred             HHHhhhcCCHHHHHHH---------------------------------------------------------HHcCcHH
Q 009514          167 AFSSLIAEKEDMQKLA---------------------------------------------------------FEVNGVD  189 (533)
Q Consensus       167 ~L~~l~~~~~~~~~~~---------------------------------------------------------~~~~~l~  189 (533)
                      .+..++..........                                                         .....++
T Consensus       289 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  368 (861)
T d2bpta1         289 FWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE  368 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhh
Confidence            4443332111100000                                                         0001112


Q ss_pred             HHHHhhhc--CCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccch
Q 009514          190 KLYNHLQK--GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG  267 (533)
Q Consensus       190 ~L~~~L~~--~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~  267 (533)
                      .+...+..  .+.++..++.++.+++.+..........-.-...++.+++.+.++++.+|..++++++.++...+..   
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---  445 (861)
T d2bpta1         369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES---  445 (861)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG---
T ss_pred             hhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchh---
Confidence            22211110  1123556777777777776533221111112357889999999999999999999999997653321   


Q ss_pred             hhhhcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHhcCCchhHH---HHHHhCcHHHHHHhhcC--CCHHHHHHHHHHH
Q 009514          268 SFMNETIVIPLVRLL---DDTSTAVQVAALGAISNIVVDFTTRRS---TFIRLGGVKLLVQLSKS--MDSTIRLNALRAL  339 (533)
Q Consensus       268 ~~~~~~~i~~Lv~lL---~~~~~~v~~~a~~aL~nl~~~~~~~~~---~~~~~~~i~~L~~ll~~--~~~~~~~~al~aL  339 (533)
                       +......+.++..+   ..+++.++..+++++.++.........   .-.....+..++.....  .+..++..+..++
T Consensus       446 -~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al  524 (861)
T d2bpta1         446 -IDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             -SCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             -hhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence             22234444444433   256788899999988877642111000   00001234444444432  2345667777777


Q ss_pred             HHhhccCChHhHHHH---------------------------------H-----------H----------hhcHHHHHh
Q 009514          340 RNLIFLAEDKCKEEI---------------------------------F-----------M----------ELTASLLAS  365 (533)
Q Consensus       340 ~~l~~~~~~~~~~~i---------------------------------~-----------~----------~~~~~~l~~  365 (533)
                      ..+....+......+                                 .           .          ...++.+.+
T Consensus       525 ~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~  604 (861)
T d2bpta1         525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFR  604 (861)
T ss_dssp             HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence            666543332111100                                 0           0          001222333


Q ss_pred             hhC-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHH
Q 009514          366 LIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ  444 (533)
Q Consensus       366 lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  444 (533)
                      .+. .++..+++.++.++..++....+.....+.   .+++.+...+.+ .++.++..++.+++.++...........  
T Consensus       605 ~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~---~i~p~l~~~l~~-~~~~v~~~a~~~l~~i~~~~~~~~~~~~--  678 (861)
T d2bpta1         605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE---TFSPYLLKALNQ-VDSPVSITAVGFIADISNSLEEDFRRYS--  678 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH---HHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTGGGGHHHH--
T ss_pred             hcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH---HHhhHHHHHhCC-CCHHHHHHHHHHHHHHHHHhHHHhHhhH--
Confidence            332 334566777777777776543222222222   267778777877 7788999999999998875544444444  


Q ss_pred             hhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhcC
Q 009514          445 LLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTC  481 (533)
Q Consensus       445 ~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~~  481 (533)
                            ..+++.+.+.++++  +..+|..+..+++.++.
T Consensus       679 ------~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~  711 (861)
T d2bpta1         679 ------DAMMNVLAQMISNPNARRELKPAVLSVFGDIAS  711 (861)
T ss_dssp             ------HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence                  35778888999865  45799999999999885

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=6.3e-11  Score=109.31  Aligned_cols=254  Identities=15%  Similarity=0.109  Sum_probs=186.9

Q ss_pred             CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc
Q 009514          186 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS  265 (533)
Q Consensus       186 ~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~  265 (533)
                      ...+.|+++|.++  ++.+|..|+.+|+.+..  +         ..++.++++++++++.+|..|+.+|..+.....   
T Consensus        19 ~~~~~L~~~L~d~--~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~---   82 (276)
T d1oyza_          19 LNDDELFRLLDDH--NSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK---   82 (276)
T ss_dssp             SCHHHHHHHTTCS--SHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT---
T ss_pred             CCHHHHHHHhcCC--CHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc---
Confidence            3456788888765  58999999999987642  1         358999999999999999999999988854311   


Q ss_pred             chhhhhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514          266 AGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF  344 (533)
Q Consensus       266 ~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~  344 (533)
                          ......+.+.. +++++++.++..++.+|+++........     ...++.+...+.++++.++..++.+++....
T Consensus        83 ----~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~-----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~  153 (276)
T d1oyza_          83 ----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND  153 (276)
T ss_dssp             ----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ----cccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh-----HHHHHHHHHHhcCcchHHHHHHHHHHhhcch
Confidence                11223444444 5678999999999999999886443322     2356778888889999999999998887632


Q ss_pred             cCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHH
Q 009514          345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM  424 (533)
Q Consensus       345 ~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~  424 (533)
                                  ...++.+..++.+.+..++..+..++.........           ..+.+...+.+ .+..++..+.
T Consensus       154 ------------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~  209 (276)
T d1oyza_         154 ------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD-----------IRDCFVEMLQD-KNEEVRIEAI  209 (276)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH-----------HHHHHHHHTTC-SCHHHHHHHH
T ss_pred             ------------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc-----------cchhhhhhhhh-hhhhhhhhhc
Confidence                        23467888888999999998888888777655432           34445555555 7888999999


Q ss_pred             HHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHH
Q 009514          425 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVK  504 (533)
Q Consensus       425 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~  504 (533)
                      ++++.+.  .                ...++.|+..+.++  .+|..++++|..+..               .++++.|.
T Consensus       210 ~al~~~~--~----------------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~---------------~~~~~~L~  254 (276)
T d1oyza_         210 IGLSYRK--D----------------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---------------KTLLPVLD  254 (276)
T ss_dssp             HHHHHTT--C----------------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---------------GGGHHHHH
T ss_pred             cccchhh--h----------------hhhHHHHHHHhCCh--HHHHHHHHHHHHcCC---------------HHHHHHHH
Confidence            9887653  1                23456777777754  589999999998872               24688999


Q ss_pred             hhhcC-CCCcHHHHHHHHHH
Q 009514          505 NMVND-PCLDVKLRVKTALE  523 (533)
Q Consensus       505 ~ll~~-~~~~v~~~a~~aL~  523 (533)
                      +++.+ ++.+|+..|..+|.
T Consensus       255 ~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         255 TMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHccCCCHHHHHHHHHHHc
Confidence            98854 57889888887775

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.5e-10  Score=120.78  Aligned_cols=431  Identities=14%  Similarity=0.118  Sum_probs=264.1

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcC--ChhhHHHHHHHHHHhhhcCCCcc-
Q 009514           61 KRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIRNASPCYL-  137 (533)
Q Consensus        61 ~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~-  137 (533)
                      +.|-..+..+..+|..|-..|..+...++           .+.+..+...+.+.  +..+|..|+-.|.|......... 
T Consensus         5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~-----------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~   73 (876)
T d1qgra_           5 TILEKTVSPDRLELEAAQKFLERAAVENL-----------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (876)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcCh-----------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchh
Confidence            34444444466888888888887665432           23466677766543  46789999999998775432110 


Q ss_pred             ---------hhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHH
Q 009514          138 ---------QDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI  208 (533)
Q Consensus       138 ---------~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a  208 (533)
                               .+...+..+...+++.+.+++..+..++.+++.++..+-...++   -+.++.|.+.+.+++..+..++.+
T Consensus        74 ~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~~~~~~a~~i~~i~~~~~p~~~W---peli~~L~~~l~~~~~~~~~~~~~  150 (876)
T d1qgra_          74 AQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQW---PELIPQLVANVTNPNSTEHMKEST  150 (876)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSSCHHHHHHHHHHHHHGGGTCC---TTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred             hhhhcccccCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHCCcccc---HHHHHHHHHHhcCCCCcHHHHHHH
Confidence                     11123445667778888765566667788888776321000000   145788888787765556788899


Q ss_pred             HHHHHHhhccchhhhHhhhhhchHHHHHHhcCCC--CHHHHHHHHHHHHHHhhcccc-ccchhhhhcCcHHHHHHhhcCC
Q 009514          209 LLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKN-LSAGSFMNETIVIPLVRLLDDT  285 (533)
Q Consensus       209 ~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~--~~~v~~~a~~~L~~ls~~~~~-~~~~~~~~~~~i~~Lv~lL~~~  285 (533)
                      +.+|..++..-......-.-..+++.+++.+.+.  +..++..+..++.+....... .... ....-+++.+...+.++
T Consensus       151 l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~  229 (876)
T d1qgra_         151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE-SERHFIMQVVCEATQCP  229 (876)
T ss_dssp             HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSH-HHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHhcCC
Confidence            9999998752211111111235788888888644  578999999998877543211 1111 11223556677777899


Q ss_pred             CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHH------------
Q 009514          286 STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEE------------  353 (533)
Q Consensus       286 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~------------  353 (533)
                      +++++..++.++..+...++............+.+.....+.++.++..++..+..++.... .....            
T Consensus       230 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~  308 (876)
T d1qgra_         230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM-DLAIEASEAAEQGRPPE  308 (876)
T ss_dssp             SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSCCS
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHhhhhHH
Confidence            99999999999999987665544444444455566667778888888888887777654211 00000            


Q ss_pred             --------HHHhhcHHHHHhhhC-------CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchh
Q 009514          354 --------IFMELTASLLASLIC-------DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE  418 (533)
Q Consensus       354 --------i~~~~~~~~l~~lL~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~  418 (533)
                              .......+.+...+.       +.+..++..+..++..++...++.   ++.   .+++.+...+.+ +++.
T Consensus       309 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~---~~~~~i~~~l~~-~~~~  381 (876)
T d1qgra_         309 HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVP---HVLPFIKEHIKN-PDWR  381 (876)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GHH---HHHHHHHHHTTC-SSHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---hhh---hhHHHHHHhhcc-chHH
Confidence                    001112333444332       123457777777776665432211   111   144555555665 7888


Q ss_pred             HHHHHHHHHHHhccCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCC--CCcHHHHHHHH
Q 009514          419 IEIQGMYVLGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSS--PGSSGRLVKLH  495 (533)
Q Consensus       419 v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~l~  495 (533)
                      .+..++..++.+..+.. ......+        ..+++.+...+.++++.+|..++|++..++....  ........   
T Consensus       382 ~r~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~---  450 (876)
T d1qgra_         382 YRDAAVMAFGCILEGPEPSQLKPLV--------IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA---  450 (876)
T ss_dssp             HHHHHHHHHHHTSSSSCHHHHHHHH--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH---
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHH--------HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhh---
Confidence            99999999999887543 2233333        4677899999999999999999999999874110  00000111   


Q ss_pred             HCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhh
Q 009514          496 DAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF  528 (533)
Q Consensus       496 ~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~  528 (533)
                        ..++.+...++ +++.++.++.+++.++.+.
T Consensus       451 --~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~  480 (876)
T d1qgra_         451 --PLLQCLIEGLS-AEPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             --HHHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence              12445555554 3678888899999888654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8.5e-10  Score=123.27  Aligned_cols=480  Identities=12%  Similarity=0.100  Sum_probs=297.8

Q ss_pred             ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc-C-ChHHHHHHHHHHHHHhcCChhhhh
Q 009514           16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-G-SLIQRDASLESIATIFKNNPEVVS   93 (533)
Q Consensus        16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~-~-~~~v~~~al~aL~~l~~~~~~~~~   93 (533)
                      +..++.|+..|++++..+|..|+.+|+.++..-...   .-...++.++..+. + +...+..++.+++.++...+....
T Consensus       171 ~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~  247 (1207)
T d1u6gc_         171 PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG  247 (1207)
T ss_dssp             HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhH
Confidence            457788999999999999999999999987543211   11234556666554 3 445667788889888876554322


Q ss_pred             hhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-----------------
Q 009514           94 QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-----------------  156 (533)
Q Consensus        94 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-----------------  156 (533)
                      .    .-...++.++..+++++..+|..+..++..+....+....  -.....++.+.+.+..                 
T Consensus       248 ~----~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~--~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~  321 (1207)
T d1u6gc_         248 E----YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY--PHVSTIINICLKYLTYDPNYNYDDEDEDENAMD  321 (1207)
T ss_dssp             T----SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCH--HHHHHHHHHHTTCCCCC----------------
T ss_pred             H----HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhh--hhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhh
Confidence            1    2246788889999999999999999999988776543221  1122334444333321                 


Q ss_pred             ---------------------CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHh
Q 009514          157 ---------------------PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM  215 (533)
Q Consensus       157 ---------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l  215 (533)
                                           ...++..++.+|..+....++..... -...++.++..+.+.  ++.+|..++.++..+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~-~~~~~~~L~~~l~d~--~~~vr~~~~~~l~~l  398 (1207)
T d1u6gc_         322 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKER--EENVKADVFHAYLSL  398 (1207)
T ss_dssp             --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCS--SSHHHHHHHHHHHHH
T ss_pred             hhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhcCC--chHHHHHHHHHHHHH
Confidence                                 11245567777777765544322221 235678888877554  477888888888776


Q ss_pred             hccchhh----------------hHhhh--hhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHH
Q 009514          216 CSKLECC----------------RSRCL--SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP  277 (533)
Q Consensus       216 ~~~~~~~----------------~~~~~--~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~  277 (533)
                      .......                ...+.  -..+++.+.+.+++.++.++..+..++..+....+.....  .....++.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~--~l~~~~~~  476 (1207)
T d1u6gc_         399 LKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ--HIPVLVPG  476 (1207)
T ss_dssp             HHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG--GHHHHHHH
T ss_pred             HHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHH--hhHhhHHH
Confidence            5321110                01111  1246777888889999999999999999987654332222  12345566


Q ss_pred             HHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh-------
Q 009514          278 LVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED-------  348 (533)
Q Consensus       278 Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~-------  348 (533)
                      +...+.+  ....++..++..+..+........-...-....+.+...+.++...++..++.++..+.....+       
T Consensus       477 i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~  556 (1207)
T d1u6gc_         477 IIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSF  556 (1207)
T ss_dssp             HHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhh
Confidence            6666654  4567888999999888765443322223346778888888888889998888888776532111       


Q ss_pred             HhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHH
Q 009514          349 KCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV  426 (533)
Q Consensus       349 ~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~  426 (533)
                      +.... +. ..++.+...+.  +.+.+++..++.++..+.....+.....+..   +++.+...+.   +...+..++.+
T Consensus       557 ~~~~~-~~-~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~---~l~~l~~~l~---~~~~r~~a~~~  628 (1207)
T d1u6gc_         557 DATPY-IK-DLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPN---TLQIFLERLK---NEITRLTTVKA  628 (1207)
T ss_dssp             CCHHH-HH-HHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHH---HHHHHHHHTT---SSSHHHHHHHH
T ss_pred             hhHHH-HH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHhc---chhhHHHHHHH
Confidence            01111 11 12344444443  5677899999888887764432211111110   3444444443   34567777888


Q ss_pred             HHHhccCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCC-cHHHHHHHHHCCcHHHHH
Q 009514          427 LGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPG-SSGRLVKLHDAGIVSHVK  504 (533)
Q Consensus       427 L~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~l~~~g~~~~L~  504 (533)
                      +..++.... ......+        ...++.+...+++.+..+|..+..++..+.....+. ......     .+++.+.
T Consensus       629 l~~i~~~~~~~~~~~~l--------~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~-----~~l~~l~  695 (1207)
T d1u6gc_         629 LTLIAGSPLKIDLRPVL--------GEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMID-----AVLDELP  695 (1207)
T ss_dssp             HHHHTTCSSCCCCHHHH--------HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHH-----HHHTTCG
T ss_pred             HHHHHHhccchhHHHHH--------HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHh-----hHHHhhc
Confidence            887765322 1122333        356688999999999999999999998887532222 222222     2345566


Q ss_pred             hhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514          505 NMVNDPCLDVKLRVKTALEQFNSFDD  530 (533)
Q Consensus       505 ~ll~~~~~~v~~~a~~aL~~~~~~~~  530 (533)
                      .++.+.+..++..+...|..+.+..+
T Consensus       696 ~ll~~~d~~v~~~~l~~l~~l~~~~~  721 (1207)
T d1u6gc_         696 PLISESDMHVSQMAISFLTTLAKVYP  721 (1207)
T ss_dssp             GGSCTTCHHHHHHHHHHHHHHTTSCG
T ss_pred             cccccccHHHHHHHHHHHHHHHhhcc
Confidence            77777777888888888888766443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.3e-10  Score=112.13  Aligned_cols=389  Identities=13%  Similarity=0.104  Sum_probs=234.6

Q ss_pred             HHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHHHHhcCC-hhhhhhh-
Q 009514           21 FLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNN-PEVVSQF-   95 (533)
Q Consensus        21 ~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~~l~~~~-~~~~~~~-   95 (533)
                      .|-.++ ++|.+++..|...|..+..++.       .+.+..+..++.+   +..+|..|+..|.+..... +...... 
T Consensus         5 il~~~~-s~d~~~r~~A~~~L~~~~~~~~-------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~   76 (458)
T d1ibrb_           5 ILEKTV-SPDRLELEAAQKFLERAAVENL-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   76 (458)
T ss_dssp             HHHHTT-CSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHHh-CcCHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHh
Confidence            333344 5889999999999998874211       2356677777754   3578888888887754332 2211111 


Q ss_pred             ---ccc---cCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC---CchhhhHHH
Q 009514           96 ---VGP---DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP---GRVGDEASF  166 (533)
Q Consensus        96 ---~~~---~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~a~~  166 (533)
                         ...   ........+++.+.++++..+. ++.++..++....    ....+.+.++.+++.+.++   ...+..+..
T Consensus        77 ~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~  151 (458)
T d1ibrb_          77 QRWLAIDANARREVKNYVLQTLGTETYRPSS-ASQCVAGIACAEI----PVNQWPELIPQLVANVTNPNSTEHMKESTLE  151 (458)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTCCCSSSCS-HHHHHHHHHHHHG----GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             hhhccCCHHHHHHHHHHHHhccCCCcHHHHH-HHHHHHHHHHHhC----CcccCcchhHHHHHHHHhhcchHHHHHHHHH
Confidence               000   0112333456666676655543 4455555544311    1122457888998888643   234556667


Q ss_pred             HHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhh-HhhhhhchHHHHHHhcCCCCHH
Q 009514          167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR-SRCLSLQVLKLVVDALAHDSSD  245 (533)
Q Consensus       167 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~-~~~~~~~~l~~l~~~L~~~~~~  245 (533)
                      ++..+................++.++..+.+......++..++.++..+........ .........+.+..++.+++++
T Consensus       152 ~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  231 (458)
T d1ibrb_         152 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR  231 (458)
T ss_dssp             HHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHH
Confidence            766655322111000001123566777777655556789999999988875433221 1222334677788888999999


Q ss_pred             HHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH-----------------
Q 009514          246 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR-----------------  308 (533)
Q Consensus       246 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-----------------  308 (533)
                      ++..++.++..+....+..-.. .......+.+...+.+.+++++..++..+..++.......                 
T Consensus       232 ~~~~~~~~l~~i~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  310 (458)
T d1ibrb_         232 VRVAALQNLVKIMSLYYQYMET-YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS  310 (458)
T ss_dssp             HHHHHHHHHHHHHHHCGGGCTT-TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCC
T ss_pred             HHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHH
Confidence            9999999999997654332222 1223334445566678899999999998888763211100                 


Q ss_pred             ---HHHHHhCcHHHHHHhhcC-------CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHH
Q 009514          309 ---STFIRLGGVKLLVQLSKS-------MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA  378 (533)
Q Consensus       309 ---~~~~~~~~i~~L~~ll~~-------~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a  378 (533)
                         .........+.+...+..       .+..+|..+..++..++...+...    + ...++.+.+.++++++.+|..+
T Consensus       311 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~----~-~~l~~~i~~~l~s~~~~~r~aa  385 (458)
T d1ibrb_         311 KFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI----V-PHVLPFIKEHIKNPDWRYRDAA  385 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH----H-HHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh----h-hHHHHHHHHHhcCCCHHHHHHH
Confidence               001111234444444432       123578888888888775443222    2 2345677888899999999999


Q ss_pred             HHHHHHhhcCCc-chHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          379 LALVRNLVDGRI-NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       379 ~~~L~~l~~~~~-~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                      +.+|+.++.+.. +.....+   ..+++.+...+.+ +++.||..|+|+|+.++.
T Consensus       386 l~~l~~i~~~~~~~~~~~~l---~~i~~~l~~~l~d-~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         386 VMAFGCILEGPEPSQLKPLV---IQAMPTLIELMKD-PSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHTSSSSCTTTTCTTT---TTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHhHHHHHH---HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHH
Confidence            999999986532 1111111   2278888888887 899999999999999875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.4e-09  Score=100.04  Aligned_cols=255  Identities=16%  Similarity=0.131  Sum_probs=188.1

Q ss_pred             ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHH
Q 009514          102 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQK  180 (533)
Q Consensus       102 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~  180 (533)
                      .....++++++++++.+|..|+..|..+..            ...+|.|++++++ ++.++..|+.+|..+........ 
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~-   85 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED-   85 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc-
Confidence            346678999999999999999999876432            2578999999985 46789999999998864332211 


Q ss_pred             HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 009514          181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS  260 (533)
Q Consensus       181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~  260 (533)
                           ..++.+...+.+. .++.++..++.+|+.++...+.     .....++.+...+.+.++.++..++.+++.+   
T Consensus        86 -----~~~~~l~~~~l~d-~~~~vr~~a~~aL~~~~~~~~~-----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~---  151 (276)
T d1oyza_          86 -----NVFNILNNMALND-KSACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAFDKSTNVRRATAFAISVI---  151 (276)
T ss_dssp             -----HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             -----chHHHHHHHHhcC-CChhHHHHHHHHHHHHccccch-----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhc---
Confidence                 1234555544444 3588999999999988754322     2234678888899999999999888877543   


Q ss_pred             cccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 009514          261 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR  340 (533)
Q Consensus       261 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~  340 (533)
                               .....++.+..++.+.+..++..+..++.+......         ...+.+...+...+..++..+..++.
T Consensus       152 ---------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~al~  213 (276)
T d1oyza_         152 ---------NDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLS  213 (276)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             ---------chHHHHHHHHHhcccccchhhhhHHHHHHhhhcccc---------ccchhhhhhhhhhhhhhhhhhccccc
Confidence                     234567788999999999999999999988765432         23455677788899999999999998


Q ss_pred             HhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHH
Q 009514          341 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE  420 (533)
Q Consensus       341 ~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~  420 (533)
                      .+..            ...++.|++.+.++  .++..++++|+.+..  +.           .++.|...|..+.+.+++
T Consensus       214 ~~~~------------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~--~~-----------~~~~L~~~l~~~~d~~vr  266 (276)
T d1oyza_         214 YRKD------------KRVLSVLCDELKKN--TVYDDIIEAAGELGD--KT-----------LLPVLDTMLYKFDDNEII  266 (276)
T ss_dssp             HTTC------------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC--GG-----------GHHHHHHHHTTSSCCHHH
T ss_pred             hhhh------------hhhHHHHHHHhCCh--HHHHHHHHHHHHcCC--HH-----------HHHHHHHHHccCCCHHHH
Confidence            7632            23577788888754  588899999998853  22           678887878775678899


Q ss_pred             HHHHHHHH
Q 009514          421 IQGMYVLG  428 (533)
Q Consensus       421 ~~a~~~L~  428 (533)
                      ..|+..|.
T Consensus       267 ~~A~~~L~  274 (276)
T d1oyza_         267 TSAIDKLK  274 (276)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            88887763

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.6e-08  Score=106.71  Aligned_cols=428  Identities=14%  Similarity=0.120  Sum_probs=257.6

Q ss_pred             HHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHHHHhcCC-hhhhh--
Q 009514           20 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNN-PEVVS--   93 (533)
Q Consensus        20 ~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~~l~~~~-~~~~~--   93 (533)
                      +.|-..+ |+|..++..|-.-|.....++.       .|.+..|..++.+   +..+|..|+..|.+....+ .....  
T Consensus         5 ~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~-------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~   76 (876)
T d1qgra_           5 TILEKTV-SPDRLELEAAQKFLERAAVENL-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   76 (876)
T ss_dssp             HHHHGGG-CSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHh-CcCHHHHHHHHHHHHHHHhcCh-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence            4444444 5788999999999888763211       3467778887764   4578999998888765332 21111  


Q ss_pred             -----hhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC---CchhhhHH
Q 009514           94 -----QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP---GRVGDEAS  165 (533)
Q Consensus        94 -----~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~a~  165 (533)
                           .+...........++..+.+++. ++..++.++..++...-    ....+.+.+|.|.+.+.++   ..++..+.
T Consensus        77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~----p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l  151 (876)
T d1qgra_          77 QQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEI----PVNQWPELIPQLVANVTNPNSTEHMKESTL  151 (876)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHG----GGTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             hcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHC----CccccHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence                 11100111233446667777664 44456777777766421    0112457899999988632   34566778


Q ss_pred             HHHHhhhcCC-HHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhH-hhhhhchHHHHHHhcCCCC
Q 009514          166 FAFSSLIAEK-EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS-RCLSLQVLKLVVDALAHDS  243 (533)
Q Consensus       166 ~~L~~l~~~~-~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~-~~~~~~~l~~l~~~L~~~~  243 (533)
                      .++..+..+. +.... -.-...++.++..+.+...+..++..++.++.+........-. .....-.++.+...+++++
T Consensus       152 ~~l~~i~~~~~~~~~~-~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~  230 (876)
T d1qgra_         152 EAIGYICQDIDPEQLQ-DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  230 (876)
T ss_dssp             HHHHHHHHHSCHHHHG-GGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCC
Confidence            8888776432 22111 0112346777887776544567888888888876643322111 1112235677778888999


Q ss_pred             HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH--------------
Q 009514          244 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS--------------  309 (533)
Q Consensus       244 ~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~--------------  309 (533)
                      +.++..++.++..+.......-.. .....+.+.+...+.+.+.+++..+...+..++........              
T Consensus       231 ~~v~~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  309 (876)
T d1qgra_         231 TRVRVAALQNLVKIMSLYYQYMET-YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH  309 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSGGGCHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHH
Confidence            999999999999997653332222 23334455566667788889988888877776642111100              


Q ss_pred             ------HHHHhCcHHHHHHhhcCC-------CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHH
Q 009514          310 ------TFIRLGGVKLLVQLSKSM-------DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQE  376 (533)
Q Consensus       310 ------~~~~~~~i~~L~~ll~~~-------~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~  376 (533)
                            .......++.+...+...       +..++..+..++..++...+..    ++ ...++.+.+.+.++++..++
T Consensus       310 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~----~~-~~~~~~i~~~l~~~~~~~r~  384 (876)
T d1qgra_         310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD----IV-PHVLPFIKEHIKNPDWRYRD  384 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG----GH-HHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh----hh-hhhHHHHHHhhccchHHHHH
Confidence                  011112334444443321       2346777777777765432211    11 12345667777899999999


Q ss_pred             HHHHHHHHhhcCCcch-HHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhH--HHHHHHhhHhhhhhh
Q 009514          377 QALALVRNLVDGRINS-VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK--EAVMDQLLLRAENKA  453 (533)
Q Consensus       377 ~a~~~L~~l~~~~~~~-~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~~~~~~  453 (533)
                      .++..+..+..+.... ......   .+++.+...+.+ +++.|+..++++++.++...+...  ...+        ...
T Consensus       385 ~~~~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--------~~~  452 (876)
T d1qgra_         385 AAVMAFGCILEGPEPSQLKPLVI---QAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAAINDVYL--------APL  452 (876)
T ss_dssp             HHHHHHHHTSSSSCHHHHHHHHH---HHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--------HHH
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHH---HHHHHHHHhhcC-CccHHHHHHHHHHHHHHHHcchhhhhHHHh--------hhH
Confidence            9999999888764321 222221   267777777777 889999999999999875322111  1111        233


Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          454 QSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       454 ~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      ++.+...+. +++.++..+++++.++.
T Consensus       453 ~~~l~~~l~-~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         453 LQCLIEGLS-AEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHHHHHHTT-SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-CCHHHHHHHHHHHHHHH
Confidence            455555554 46789999999998886

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.59  E-value=6.5e-09  Score=81.03  Aligned_cols=110  Identities=14%  Similarity=0.193  Sum_probs=86.9

Q ss_pred             hCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhh
Q 009514          367 ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLL  446 (533)
Q Consensus       367 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  446 (533)
                      |+|+++.||..|+++|..+...              .++.|.+.|.+ +++.|+..++++|+++..              
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~~--------------~~~~L~~~l~d-~~~~vR~~a~~~L~~~~~--------------   51 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGDE--------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD--------------   51 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSST--------------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS--------------
T ss_pred             CCCcCHHHHHHHHHHHHHhCHH--------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcch--------------
Confidence            4577788888888777655321              45667777876 899999999999987642              


Q ss_pred             HhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHH
Q 009514          447 LRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ  524 (533)
Q Consensus       447 ~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~  524 (533)
                          .+.++.|+.+|+++++.||.+|+++|..+..               .+.++.|.+++++++++|++.|..||..
T Consensus        52 ----~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~---------------~~~~~~L~~ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          52 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ----hhhHHHHHhhhccchhHHHHHHHHHHHHhCc---------------cchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence                2344788899999999999999999999873               1247888999999999999999988853

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=2.1e-05  Score=74.73  Aligned_cols=320  Identities=14%  Similarity=0.135  Sum_probs=191.9

Q ss_pred             ccchHHHHhhhcC-CCcchhHHHHHHHHHhhcCchhHHH----HHhcC--chHHHHHhhcCCh-HHHHHHHHHHHHHhcC
Q 009514           16 EENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKL----LFDAG--VLKRLTSLLGGSL-IQRDASLESIATIFKN   87 (533)
Q Consensus        16 ~~~i~~L~~lL~~-~~~~v~~~a~~~l~~~~~~~~~~~~----i~~~g--~i~~L~~lL~~~~-~v~~~al~aL~~l~~~   87 (533)
                      +..+..++++|+. +.+++.++....+..+-..+..+..    ..+..  .-+++...+.+++ -....+...+..++..
T Consensus        73 ~~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~  152 (477)
T d1ho8a_          73 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  152 (477)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             cHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence            4568889999985 5677888888888876654433222    22211  1223444454433 3445555556666543


Q ss_pred             Chhhh---hhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhh--hHhhhHHHHHHhcC---CC--
Q 009514           88 NPEVV---SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG--IKTKLINNLLELLD---DP--  157 (533)
Q Consensus        88 ~~~~~---~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~~i~~L~~ll~---~~--  157 (533)
                      .....   ..+.     .....+-.+.++.+.+.+..|+.|+..+....+  .+..+  .+...++.|++++.   +.  
T Consensus       153 ~~~~~~~~e~l~-----~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~--~R~~fw~~~~~~~~~l~~il~~a~~~~~  225 (477)
T d1ho8a_         153 GLHNVKLVEKLL-----KNNNLINILQNIEQMDTCYVCIRLLQELAVIPE--YRDVIWLHEKKFMPTLFKILQRATDSQL  225 (477)
T ss_dssp             TTCCHHHHHHHH-----HCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH--HHHHHHTTHHHHHHHHHHHHHHHHC---
T ss_pred             cccccchHHHHH-----HhhHHHHHhhcccccchHHHHHHHHHHHhcCcc--HHHHHHHcccchHHHHHHHHHHHhcccc
Confidence            32211   1110     111222235567788888899999998887643  23222  24456777777774   11  


Q ss_pred             -------------CchhhhHHHHHHhhhcCCHHHHHHHHHc--CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch--
Q 009514          158 -------------GRVGDEASFAFSSLIAEKEDMQKLAFEV--NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE--  220 (533)
Q Consensus       158 -------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~--  220 (533)
                                   ..++..++.++.-++.+.+ ....+.+.  +.++.+++++.... -.++..-++.++.++.....  
T Consensus       226 ~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s~-KEKvvRv~l~~l~Nll~~~~~~  303 (477)
T d1ho8a_         226 ATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVKQ  303 (477)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSSTT
T ss_pred             cchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhhhhhh
Confidence                         1357888888888876443 33444443  33788888887763 45666677788899875422  


Q ss_pred             ---hhhHhhhhhchHHHHHHhcCC--CCHHHHHHHHHHHHHHhhcc---------------ccccch-------------
Q 009514          221 ---CCRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSI---------------KNLSAG-------------  267 (533)
Q Consensus       221 ---~~~~~~~~~~~l~~l~~~L~~--~~~~v~~~a~~~L~~ls~~~---------------~~~~~~-------------  267 (533)
                         .....++..++++.+-.+...  .|+++....-..-..|....               +.++++             
T Consensus       304 ~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~  383 (477)
T d1ho8a_         304 HKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNI  383 (477)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHS
T ss_pred             hhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHH
Confidence               122334555666655444332  24544332221111111000               111111             


Q ss_pred             -hhhh--cCcHHHHHHhhc----------CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHH
Q 009514          268 -SFMN--ETIVIPLVRLLD----------DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN  334 (533)
Q Consensus       268 -~~~~--~~~i~~Lv~lL~----------~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~  334 (533)
                       +|-+  ...+..|+++|+          +.|+.+...||.=|+.++..++..+..+-+.|+=..+++++.++|+++|.+
T Consensus       384 ~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~e  463 (477)
T d1ho8a_         384 DEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYE  463 (477)
T ss_dssp             GGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHH
T ss_pred             HhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence             1222  235788999995          347888999999999999999888877777888788899999999999999


Q ss_pred             HHHHHHHhhc
Q 009514          335 ALRALRNLIF  344 (533)
Q Consensus       335 al~aL~~l~~  344 (533)
                      |+.++..+..
T Consensus       464 AL~avQklm~  473 (477)
T d1ho8a_         464 ALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.45  E-value=2.6e-08  Score=77.46  Aligned_cols=109  Identities=18%  Similarity=0.181  Sum_probs=86.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHH
Q 009514          239 LAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVK  318 (533)
Q Consensus       239 L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~  318 (533)
                      |+++++.||..|+++|+.+             ....++.|++.|.++++.++..|+++|+++..           .+.++
T Consensus         1 L~D~~~~VR~~A~~aL~~~-------------~~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRM-------------GDEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSC-------------SSTTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHh-------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHH
Confidence            4567778887777766432             12457889999999999999999999987642           23578


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHH
Q 009514          319 LLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVR  383 (533)
Q Consensus       319 ~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~  383 (533)
                      .|..+++++++.+|..++++|+.+..   +         ...+.|..+++++++.++..|+.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~~---~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhCc---c---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            89999999999999999999998832   1         24678888999999999999987763

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=7.4e-05  Score=70.88  Aligned_cols=268  Identities=12%  Similarity=0.081  Sum_probs=167.7

Q ss_pred             chhHHHHHHHHHHhhccchhhhHhhhh--hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhh--hhcCcHHH
Q 009514          202 PRRFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF--MNETIVIP  277 (533)
Q Consensus       202 ~~~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~--~~~~~i~~  277 (533)
                      +-....+...+..++........ ..+  ......+..+...++.+.+..++.++..+.+. +..|.. |  .+...+++
T Consensus       136 ~~~~~~s~~i~~ll~~~~~~~~~-~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~-fw~~~~~~~~~  212 (477)
T d1ho8a_         136 QTVLISGFNVVSLLVQNGLHNVK-LVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDV-IWLHEKKFMPT  212 (477)
T ss_dssp             HHHHHHHHHHHHHHTSTTTCCHH-HHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHH-HHTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccccccc-hHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHH-HHHcccchHHH
Confidence            44555666666666554322111 111  11233344444677888888899999888876 444543 3  34556778


Q ss_pred             HHHhhcC-----------------CCHHHHHHHHHHHHHHhcCCchhHHHHHHh--CcHHHHHHhhc-CCCHHHHHHHHH
Q 009514          278 LVRLLDD-----------------TSTAVQVAALGAISNIVVDFTTRRSTFIRL--GGVKLLVQLSK-SMDSTIRLNALR  337 (533)
Q Consensus       278 Lv~lL~~-----------------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~--~~i~~L~~ll~-~~~~~~~~~al~  337 (533)
                      |+.+|+.                 .+..+++.++-++.-++.+ +.....+.+.  +.++.++++++ +..+++.+-++.
T Consensus       213 l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~  291 (477)
T d1ho8a_         213 LFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCIS  291 (477)
T ss_dssp             HHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             HHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            8887742                 1347899999999999863 4455556554  35888888886 456888888999


Q ss_pred             HHHHhhccCChH----hHHHHHHhhcHHHHHhhhC--CCChhHHHHHH---------------------HHHHHhhcCCc
Q 009514          338 ALRNLIFLAEDK----CKEEIFMELTASLLASLIC--DPEPSVQEQAL---------------------ALVRNLVDGRI  390 (533)
Q Consensus       338 aL~~l~~~~~~~----~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~---------------------~~L~~l~~~~~  390 (533)
                      ++.|++......    +...++..++++.+..+..  -.|+++.+..-                     .+.+.....+|
T Consensus       292 ~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP  371 (477)
T d1ho8a_         292 IILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSP  371 (477)
T ss_dssp             HHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCG
T ss_pred             HHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCC
Confidence            999998643221    2233444444544433332  23554443221                     11111112234


Q ss_pred             chH-HHHHhhc--------CchHHHHHHHhcc---------CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhh
Q 009514          391 NSV-EYIFAED--------GIILDAVGRQLRI---------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENK  452 (533)
Q Consensus       391 ~~~-~~i~~~~--------~~~~~~L~~~L~~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~  452 (533)
                      -+. +.++.+.        ..++..|..+|.+         +.++.+..-||+-++.++...|..+. ++++      -|
T Consensus       372 ~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~-il~~------lg  444 (477)
T d1ho8a_         372 PHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID-VLDK------TG  444 (477)
T ss_dssp             GGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH-HHHH------HS
T ss_pred             CcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhH-HHHH------cC
Confidence            333 3444442        1377888888862         24677888999999999987775444 5553      68


Q ss_pred             hHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514          453 AQSCIIKFLQSNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       453 ~~~~lv~~L~~~~~~v~~~a~~~L~~l~  480 (533)
                      +-..+++++.++|++||.+|..|+..+.
T Consensus       445 ~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         445 GKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            8889999999999999999999998765

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.73  E-value=4.3e-06  Score=73.12  Aligned_cols=87  Identities=21%  Similarity=0.184  Sum_probs=56.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc
Q 009514          237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG  316 (533)
Q Consensus       237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~  316 (533)
                      .+|.++++++|..|++       .            --+..|..+++++++.|+..++..|.                  
T Consensus        49 ~~l~~p~~e~Ra~Aa~-------~------------a~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------   91 (233)
T d1lrva_          49 QYLADPFWERRAIAVR-------Y------------SPVEALTPLIRDSDEVVRRAVAYRLP------------------   91 (233)
T ss_dssp             GGTTCSSHHHHHHHHT-------T------------SCGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred             HHhcCCcHHHHHHHHh-------c------------CCHHHHHHHhcCCCHHHHHHHHHHcC------------------
Confidence            3778999999976642       1            11346777899999999999876541                  


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHH
Q 009514          317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQAL  379 (533)
Q Consensus       317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~  379 (533)
                      .+.+..++++++..||..+...+.                   .+.|..++.++++.|+..+.
T Consensus        92 ~~~L~~L~~D~d~~VR~~aa~~l~-------------------~~~L~~Ll~D~d~~VR~~aa  135 (233)
T d1lrva_          92 REQLSALMFDEDREVRITVADRLP-------------------LEQLEQMAADRDYLVRAYVV  135 (233)
T ss_dssp             SGGGGGTTTCSCHHHHHHHHHHSC-------------------TGGGGGGTTCSSHHHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHhccC-------------------HHHHHHHhcCCCHHHHHHHH
Confidence            134556777788888876654321                   13455556666666665554

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.61  E-value=3.9e-05  Score=66.81  Aligned_cols=112  Identities=18%  Similarity=0.240  Sum_probs=64.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514          232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF  311 (533)
Q Consensus       232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  311 (533)
                      +..|..+++++++.||..+++.|       +            .+.|..++.+++.+|+..++..+   .          
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~L-------p------------~~~L~~L~~D~d~~VR~~aa~~l---~----------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRL-------P------------REQLSALMFDEDREVRITVADRL---P----------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTS-------C------------SGGGGGTTTCSCHHHHHHHHHHS---C----------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHc-------C------------HHHHHHHhcCCChhHHHHHHhcc---C----------
Confidence            44566788899999998886432       1            13466677788888887776543   1          


Q ss_pred             HHhCcHHHHHHhhcCCCHHHHHHHHHH-----HHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHH
Q 009514          312 IRLGGVKLLVQLSKSMDSTIRLNALRA-----LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALA  380 (533)
Q Consensus       312 ~~~~~i~~L~~ll~~~~~~~~~~al~a-----L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~  380 (533)
                           .+.|..++++++..+|..+...     |..+....++..+..+....+.+.+..+++++++.|+..++.
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~  184 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVAS  184 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHH
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHH
Confidence                 1345556677777777776543     111222223333333333334455555566666666655553

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.50  E-value=0.022  Score=52.02  Aligned_cols=204  Identities=15%  Similarity=0.152  Sum_probs=120.8

Q ss_pred             HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC----CCHHHHHHHHHHHHHHhhcccc
Q 009514          188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH----DSSDVRSAACMCLRSVSRSIKN  263 (533)
Q Consensus       188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~----~~~~v~~~a~~~L~~ls~~~~~  263 (533)
                      +..+.+++.+...+...   +...+..+......      ....+..+.+++++    .++.++..+.-+++++.+..-.
T Consensus        90 ~~~i~~~I~~~~ls~~e---a~~~l~~l~~~~~P------t~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          90 LLFLKRTLASEQLTSAE---ATQIVASTLSNQQA------TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHTTCSCHHH---HHHHHHHHHHTCCC------CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHH---HHHHHHHHhccCCC------CHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            45566777665433332   33333333321111      12346666777764    4778888888888888643110


Q ss_pred             ccchhhhhcCcHHHHHHhh----cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-------CCHHHH
Q 009514          264 LSAGSFMNETIVIPLVRLL----DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-------MDSTIR  332 (533)
Q Consensus       264 ~~~~~~~~~~~i~~Lv~lL----~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~~~~  332 (533)
                      ...  -....+++.+...+    ...+.+-+..++.+|+|+-.  +         +.++.+..++.+       .+..+|
T Consensus       161 ~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR  227 (336)
T d1lsha1         161 NTV--SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQ  227 (336)
T ss_dssp             TCS--SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHH
T ss_pred             CCC--CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHH
Confidence            000  01123445555444    46777888889999999863  2         346777777653       246799


Q ss_pred             HHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHH
Q 009514          333 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQ  410 (533)
Q Consensus       333 ~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~  410 (533)
                      ..|+++|.++....+..         ..+.+.++..  ..++++|..|...|-..   .|..         ..+..+...
T Consensus       228 ~aAi~Alr~~~~~~p~~---------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~---------~~l~~i~~~  286 (336)
T d1lsha1         228 AEAIMALRNIAKRDPRK---------VQEIVLPIFLNVAIKSELRIRSCIVFFES---KPSV---------ALVSMVAVR  286 (336)
T ss_dssp             HHHHHTTTTGGGTCHHH---------HHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH---------HHHHHHHHH
T ss_pred             HHHHHHHHHhhhcCcHH---------HHHHHHHHHcCCCCChHHHHHHHHHHHhc---CCCH---------HHHHHHHHH
Confidence            99999999987643211         1233344433  45688988888766442   2210         045666666


Q ss_pred             hccCCchhHHHHHHHHHHHhccCC
Q 009514          411 LRIASKAEIEIQGMYVLGNVATGK  434 (533)
Q Consensus       411 L~~~~~~~v~~~a~~~L~~l~~~~  434 (533)
                      +...++.+|.......|.+++...
T Consensus       287 l~~E~~~QV~sfv~S~l~~la~s~  310 (336)
T d1lsha1         287 LRREPNLQVASFVYSQMRSLSRSS  310 (336)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHhCcHHHHHHHHHHHHHHHHhCC
Confidence            766677788877777888887743

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=0.14  Score=53.61  Aligned_cols=262  Identities=10%  Similarity=0.053  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc------CCCHHHHHHHHHHHHHHhcCCchh-----------
Q 009514          245 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD------DTSTAVQVAALGAISNIVVDFTTR-----------  307 (533)
Q Consensus       245 ~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~~~-----------  307 (533)
                      ..|..+..++..++...+..     ....+.+.+...+.      +.++..++.+..+++.+.......           
T Consensus       376 ~~r~~a~~ll~~l~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~  450 (959)
T d1wa5c_         376 TRRRACTDFLKELKEKNEVL-----VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL  450 (959)
T ss_dssp             CHHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred             cHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchh
Confidence            35677777777776542211     11122233333331      357788888888888876422110           


Q ss_pred             -HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514          308 -RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV  386 (533)
Q Consensus       308 -~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~  386 (533)
                       ...++. ..+...+.........+|..++|+++..+....+...     ...++.++++|.+++..++..|++++..++
T Consensus       451 ~~~~~l~-~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~-----~~~~~~l~~~L~~~~~~V~~~a~~al~~~~  524 (959)
T d1wa5c_         451 NVVDFFT-KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL-----IELMPILATFLQTDEYVVYTYAAITIEKIL  524 (959)
T ss_dssp             CHHHHHH-HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHH-HHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHH-----HHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence             011111 1111122222334577899999999998765443221     235778889999999999999999999998


Q ss_pred             cCCcchH--------HHHHhhcCchHHHHHHHhccCCchh----HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhH
Q 009514          387 DGRINSV--------EYIFAEDGIILDAVGRQLRIASKAE----IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ  454 (533)
Q Consensus       387 ~~~~~~~--------~~i~~~~~~~~~~L~~~L~~~~~~~----v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~  454 (533)
                      .......        +.+...-..+++.+...+.......    .....+.++..+.....+......+        .++
T Consensus       525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~--------~i~  596 (959)
T d1wa5c_         525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--------QLL  596 (959)
T ss_dssp             TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--------HHH
T ss_pred             HhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence            6432110        0000000013444444443312111    1233444554443211111111111        222


Q ss_pred             HHHHHhh----cc-CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514          455 SCIIKFL----QS-NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD  529 (533)
Q Consensus       455 ~~lv~~L----~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~  529 (533)
                      +.+...+    ++ .+.........+|..+...   ..++....+ ....+|.+...++....+..+.+...+..+.+..
T Consensus       597 ~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~---~~~~~~~~l-~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         597 AQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY---TQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT---SCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh---cCchhHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            3333333    32 2455666666677776632   112222232 3345677777776666666666666666665544

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.43  E-value=0.029  Score=51.24  Aligned_cols=170  Identities=15%  Similarity=0.179  Sum_probs=97.6

Q ss_pred             CcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC----CCHHHHHHHHHHHHHhhcc-
Q 009514          273 TIVIPLVRLLDDTS--TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS----MDSTIRLNALRALRNLIFL-  345 (533)
Q Consensus       273 ~~i~~Lv~lL~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~al~aL~~l~~~-  345 (533)
                      ..+..+.+++.+..  .........++....   .+..      ..+..+..++++    .++.++..+.-++++++.. 
T Consensus        88 ~a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~---~Pt~------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~  158 (336)
T d1lsha1          88 EALLFLKRTLASEQLTSAEATQIVASTLSNQ---QATR------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRY  158 (336)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTC---CCCH------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHhccC---CCCH------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHH
Confidence            34556777775443  222333334443322   2222      234555566654    4678889999888888642 


Q ss_pred             --CChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc------CCch
Q 009514          346 --AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI------ASKA  417 (533)
Q Consensus       346 --~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~------~~~~  417 (533)
                        ..+.+...++. ...+.+.+..+..+.+-+..++.+|+|+..  +.           .++.+.+++.+      ..+.
T Consensus       159 c~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~-----------~i~~l~~~l~~~~~~~~~~~~  224 (336)
T d1lsha1         159 CANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PN-----------SIKKIQRFLPGQGKSLDEYST  224 (336)
T ss_dssp             HTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GG-----------GHHHHHTTSTTSSSCCCCSCH
T ss_pred             hcCCCCCcHHHHH-HHHHHHHHhhcccchHHHHHHHHHHhccCC--Hh-----------HHHHHHHHhcccccccccccH
Confidence              11112221111 112333444556777777788899999863  33           45666666643      1346


Q ss_pred             hHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc--cCChhHHHHHHHHHHhhc
Q 009514          418 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ--SNDSRLRTAAVWAVLNLT  480 (533)
Q Consensus       418 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~--~~~~~v~~~a~~~L~~l~  480 (533)
                      .++..|++++.+++...+....               +.+..++.  ..++++|..|...|...-
T Consensus       225 ~vR~aAi~Alr~~~~~~p~~v~---------------~~l~~i~~n~~e~~EvRiaA~~~lm~t~  274 (336)
T d1lsha1         225 RVQAEAIMALRNIAKRDPRKVQ---------------EIVLPIFLNVAIKSELRIRSCIVFFESK  274 (336)
T ss_dssp             HHHHHHHHTTTTGGGTCHHHHH---------------HHHHHHHHCTTSCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhhcCcHHHH---------------HHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence            7999999999999875542222               23444443  346899999998887643

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=1  Score=46.76  Aligned_cols=140  Identities=11%  Similarity=0.089  Sum_probs=87.5

Q ss_pred             hHHHHhhhc-CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHHHHhcCC--hhhh
Q 009514           19 MEFLLSLLN-NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNN--PEVV   92 (533)
Q Consensus        19 i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~~l~~~~--~~~~   92 (533)
                      ++.+..+|. +-+++.++.|-.-|..+..++         |....|+.++.+   +..+|..|+..|.+....+  +...
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~   74 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG   74 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            345566665 467788888888888887544         466777887764   4578888888887754321  0000


Q ss_pred             hhhccccCcccH-HHHHHHHhcCChhhHHHHHHHHHHhhhcC-CCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHH
Q 009514           93 SQFVGPDTGRTL-SCIIEIVKDRFARTRLLASLCLIVIRNAS-PCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFS  169 (533)
Q Consensus        93 ~~~~~~~~~~~i-~~l~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~  169 (533)
                      ......+....| ..++..+.+++..+|...+.++..++... +.      -+.+.+|.|++.++.+ ......+..++.
T Consensus        75 ~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~------~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~  148 (959)
T d1wa5c_          75 NHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD------RWPTLLSDLASRLSNDDMVTNKGVLTVAH  148 (959)
T ss_dssp             CBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT------TCTTHHHHHHTTCCSSCTTHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc------ccHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            000000000112 34566677788899999999999887643 22      2457899999999843 444556666666


Q ss_pred             hhhc
Q 009514          170 SLIA  173 (533)
Q Consensus       170 ~l~~  173 (533)
                      .+.+
T Consensus       149 ~i~k  152 (959)
T d1wa5c_         149 SIFK  152 (959)
T ss_dssp             HHHG
T ss_pred             HHHH
Confidence            6653

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.5  Score=41.44  Aligned_cols=202  Identities=12%  Similarity=0.143  Sum_probs=139.9

Q ss_pred             HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhh----Hhhhh-hchHHHHHHhcCCCCHHHHHHHHHHHH
Q 009514          181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR----SRCLS-LQVLKLVVDALAHDSSDVRSAACMCLR  255 (533)
Q Consensus       181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~----~~~~~-~~~l~~l~~~L~~~~~~v~~~a~~~L~  255 (533)
                      .+...+.+..|+..|..-  +.+.|..+...+.++-......+    +.+.. ..++..|+..-.  ++++-..+-..|+
T Consensus        64 e~~~~d~l~~Li~~L~~L--~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLR  139 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLI--DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGS--CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCC--CCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHH
Confidence            455677788888878765  46778888888888876443222    23332 246666666554  4444445555666


Q ss_pred             HHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhC---cHHHHHHhhcCCCHHHH
Q 009514          256 SVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG---GVKLLVQLSKSMDSTIR  332 (533)
Q Consensus       256 ~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~~~  332 (533)
                      ...+. +...+. +........+++.+..++-++...|..++..+...+......++..+   ....+-.++.+++--+|
T Consensus       140 Ecik~-e~lak~-iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         140 ECIRH-EPLAKI-ILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HHHTS-HHHHHH-HHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHhh-HHHHHH-HHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            66665 444444 56677788899999999999999999999988876655444555443   34456678899999999


Q ss_pred             HHHHHHHHHhhccCChH--hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514          333 LNALRALRNLIFLAEDK--CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG  388 (533)
Q Consensus       333 ~~al~aL~~l~~~~~~~--~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~  388 (533)
                      ..++..|+.+.....+.  ....+-+...+..+..+|++.+..+|..|..++--...+
T Consensus       218 RqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVAN  275 (330)
T d1upka_         218 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  275 (330)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcC
Confidence            99999999987543321  112333345678889999999999999999877666544

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=1.9  Score=37.67  Aligned_cols=202  Identities=11%  Similarity=0.076  Sum_probs=141.0

Q ss_pred             hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccch---hhh-hcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 009514          225 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG---SFM-NETIVIPLVRLLDDTSTAVQVAALGAISNI  300 (533)
Q Consensus       225 ~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~---~~~-~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl  300 (533)
                      .+...+.+..++..|..-+.+.|..++.+..++-+.....+..   ++. ...++..|+...  +++++...+-..|+..
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREc  141 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHH
Confidence            3455678899999999999999999999999997653322211   111 122233333333  4667777777888777


Q ss_pred             hcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhh---cHHHHHhhhCCCChhHHHH
Q 009514          301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL---TASLLASLICDPEPSVQEQ  377 (533)
Q Consensus       301 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~---~~~~l~~lL~~~~~~v~~~  377 (533)
                      +. ++.....++.......+.++...++-++-..|..++..+.... +......+...   ......++|.++++-.+.+
T Consensus       142 ik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         142 IR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             Hh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            74 5666678888888999999999999999999999999876532 33333333322   3445667999999999999


Q ss_pred             HHHHHHHhhcCCcchHHHHHhh--cCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514          378 ALALVRNLVDGRINSVEYIFAE--DGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT  432 (533)
Q Consensus       378 a~~~L~~l~~~~~~~~~~i~~~--~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~  432 (533)
                      ++..|+.+..... ....+...  .+.-+..++.+|.+ .+..|+-.|..+.--+..
T Consensus       220 SlKLLgelLldr~-N~~vm~~Yvs~~~nLkl~M~LLrd-~sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         220 SLKLLGELLLDRH-NFTIMTKYISKPENLKLMMNLLRD-KSRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHHHHHSGG-GHHHHHHHTTCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh-HHHHHHHHhCCHHHHHHHHHHhcC-chhhHHHHhhhHhhhhhc
Confidence            9999999986643 22222222  12256777788887 788999999988765554

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.80  E-value=3.1  Score=37.15  Aligned_cols=158  Identities=14%  Similarity=0.133  Sum_probs=96.2

Q ss_pred             hccchhhhHhhhhhchHHHHHHhcC----C-------CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC
Q 009514          216 CSKLECCRSRCLSLQVLKLVVDALA----H-------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD  284 (533)
Q Consensus       216 ~~~~~~~~~~~~~~~~l~~l~~~L~----~-------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~  284 (533)
                      ....-.+...+ ..+|+..|+++|.    .       .+......+.+||..+-.+....... +...+++..++..+.+
T Consensus        32 rt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~v-l~~~~~i~~l~~~L~s  109 (343)
T d2bnxa1          32 NNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDP  109 (343)
T ss_dssp             HHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHH-HHSSSHHHHHHHTCCT
T ss_pred             hcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHH-HcChHHHHHHHHccCC
Confidence            33444566666 5667777777663    1       12457778889998886653333323 4567889999999999


Q ss_pred             CCHHHHHHHHHHHHHHhcCCc--hhHHHHH----------HhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCCh-H-
Q 009514          285 TSTAVQVAALGAISNIVVDFT--TRRSTFI----------RLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAED-K-  349 (533)
Q Consensus       285 ~~~~v~~~a~~aL~nl~~~~~--~~~~~~~----------~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~-~-  349 (533)
                      +.+.++..|...|..++....  .....++          +.+-...++..+++. +.+.+..++..+..++.+.+. + 
T Consensus       110 ~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~  189 (343)
T d2bnxa1         110 AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF  189 (343)
T ss_dssp             TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             CchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH
Confidence            999999999999998885321  2222222          223445566666554 567788888777777764332 1 


Q ss_pred             ---hHHHHHHhhcHHHHHhhhC-CCChhHHH
Q 009514          350 ---CKEEIFMELTASLLASLIC-DPEPSVQE  376 (533)
Q Consensus       350 ---~~~~i~~~~~~~~l~~lL~-~~~~~v~~  376 (533)
                         .|..+...| +..+++-++ ..++++..
T Consensus       190 R~~lR~E~~~~G-l~~il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         190 RVHIRSELMRLG-LHQVLQELREIENEDMKV  219 (343)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHHHCC-hHHHHHHHHccCChHHHH
Confidence               233444454 444444444 34444443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.83  E-value=5.4  Score=35.50  Aligned_cols=129  Identities=19%  Similarity=0.208  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc--cccch---------hhhh
Q 009514          203 RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK--NLSAG---------SFMN  271 (533)
Q Consensus       203 ~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~--~~~~~---------~~~~  271 (533)
                      .....++.+|..+..........+...+++..+...|.++++.++..|...|..++.-.+  .....         ...+
T Consensus        71 ~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e  150 (343)
T d2bnxa1          71 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE  150 (343)
T ss_dssp             HHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC
Confidence            356678899999886554444455566799999999999999999999999988874311  11110         0123


Q ss_pred             cCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchh------HHHHHHhCcHHHHHHhhcCCCHHH
Q 009514          272 ETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTR------RSTFIRLGGVKLLVQLSKSMDSTI  331 (533)
Q Consensus       272 ~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~------~~~~~~~~~i~~L~~ll~~~~~~~  331 (533)
                      .+-..+++..+++ .+.+.+..+...+-.+....++.      +..+...|..+.+-.+-...++.+
T Consensus       151 ~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L  217 (343)
T d2bnxa1         151 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  217 (343)
T ss_dssp             SCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             CCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHH
Confidence            4456778887764 46788888887777777655442      234555665554444433344443

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.96  E-value=6.6  Score=32.13  Aligned_cols=143  Identities=10%  Similarity=-0.063  Sum_probs=91.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHH-HhcCCchhHH
Q 009514          232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISN-IVVDFTTRRS  309 (533)
Q Consensus       232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~n-l~~~~~~~~~  309 (533)
                      ...+-.+.+++..+.+..|+..+......         .....++.+-.++. .++.++....+..++. +...++    
T Consensus        52 ~~l~~~L~~~~~~E~r~~a~~ll~~~~~~---------~~~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~~~----  118 (213)
T d2b6ca1          52 CQEIEAYYQKTEREYQYVAIDLALQNVQR---------FSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----  118 (213)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHHTGGG---------CCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG----
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHHhc---------cCHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhhh----
Confidence            33444566777889999998888665432         11122333444454 3578888877765533 332221    


Q ss_pred             HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514          310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR  389 (533)
Q Consensus       310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~  389 (533)
                           ...+.+.....+++.-+|..|+.+........+.        ......+..++.|++.-|+....|+|+.++..+
T Consensus       119 -----~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~~~~~--------~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~  185 (213)
T d2b6ca1         119 -----ELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQ--------DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN  185 (213)
T ss_dssp             -----GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCCH--------HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred             -----hHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcccH--------HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHC
Confidence                 2335566788899999999886655443332221        112455666778899999999999999999998


Q ss_pred             cchHHHHHhhc
Q 009514          390 INSVEYIFAED  400 (533)
Q Consensus       390 ~~~~~~i~~~~  400 (533)
                      |+.+...++..
T Consensus       186 p~~v~~fl~~~  196 (213)
T d2b6ca1         186 PQWVEELMKEL  196 (213)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhC
Confidence            87666555543

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.84  E-value=3  Score=31.85  Aligned_cols=91  Identities=10%  Similarity=0.106  Sum_probs=60.1

Q ss_pred             hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc------CChhHHHHHHHHH
Q 009514          403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS------NDSRLRTAAVWAV  476 (533)
Q Consensus       403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~------~~~~v~~~a~~~L  476 (533)
                      ++..+.+.|.+ +++.++..|+..|-.+...+......-+.      ...++..+++++..      .+..|+..+...+
T Consensus        39 a~ral~krl~~-~n~~~~l~aL~LLe~~vkNcG~~fh~eva------sk~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li  111 (143)
T d1mhqa_          39 APWLLAHKIQS-PQEKEALYALTVLEMCMNHCGEKFHSEVA------KFRFLNELIKVLSPKYLGSWATGKVKGRVIEIL  111 (143)
T ss_dssp             HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHT------SHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHh------hHHHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence            66777788877 88999999999988887654333333333      26788889998863      4678998888888


Q ss_pred             HhhcC--CCCCCcHHHHHHHHHCCcH
Q 009514          477 LNLTC--SSSPGSSGRLVKLHDAGIV  500 (533)
Q Consensus       477 ~~l~~--~~~~~~~~~~~~l~~~g~~  500 (533)
                      ...+.  ++.++-.+....+...|++
T Consensus       112 ~~Wa~~f~~~~~~~~~y~~Lk~~Gvi  137 (143)
T d1mhqa_         112 FSWTVWFPEDIKIRDAYQMLKKQGII  137 (143)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHcCCCchHHHHHHHHHHCCCC
Confidence            76653  2122223334555556654